Psyllid ID: psy14540

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT
Secondary Structure (PSIPRED)
cccEEEEEccEEEEEccccEEEEEEEEEEcccEEEEEEccEEcccccccEEEEEEEccccEEEEEEccccccccEEEEEEEEcccEEEEEEEEEEEEcccccccccccEEcccccEEEEccccEEEEEEccccccccEEEEEEccEEccccccEEEEEccccEEEEEEccccccccEEEEEEEEEccccEEEEEEEEEEccccccEEEEEcccccEEEEEEEEEcccccEEEEEEEEEccccccccccEEEEccccEEEEEEEEEcccccEEEEEEccEEccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEccccEEEEcccEEEEEEEEEcccccEEEEEEccEEEcccccEEEEEEEEEcccEEEEEEEEcccccccEEEEEEEEccccEEEEEEEEEEccccccccccEEEcccccEEEEcccEEEEEEEEcccccccEEEEEEccEEEcccccEEEEEccccEEEEEEEEcccccccEEEEEEEEccccEEEEEEEEEEccccccccccccccccEEEEEEEEccccccccEEEEEEEcccEEEcccccEEEEccEEEEEEEEEccccccEEEEEEccEEEcccccEEEEc
Coil and Loop (DISEMBL)
SHPQLIYKFIQqtlqpgppvslkciatgnptphiswkldgyplagdrfvMGQYMSLHGDVIShvnissvrvedsgiyqctatnrvgsqthsadmrvydapgqpqdvklvtsnsrsikvhsgdragvqclvtkgdppltiswlknglpilsdaeitirssgeytsslsiatlstghsgnytcvasntvasdnhssnlrvneYTSSLSIAtlstghsgnytcvasntvasdnhssnlrvnvpphigpftfgeLMEGVRTQVACVVqsgdlplslqwyknglaisqpdisitlt
Flexible Loop (DISEMBL)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSrsikvhsgdragvqclvTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQwyknglaisqpdisitlt
Low Complexity Region (SEG)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT
Disordered region (IsUnstruct)
****LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV************************************DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV**********VNEYTSSLSIATLSTGHSGNYTCVASNTVA******NLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS*********
Disordered Region (DISOPRED)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG*R*******SLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLS******GHSGNYTCVASNT********NLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP*****L*
Disordered Region (DISEMBL)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT
Disordered Region (DISPRO)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q9VS29	2074	Down syndrome cell adhesi	yes	N/A	0.773	0.108	0.405	1e-43
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.786	0.113	0.298	3e-24
Q8VHZ8	2013	Down syndrome cell adhesi	yes	N/A	0.786	0.113	0.295	5e-24
Q9ERC8	2013	Down syndrome cell adhesi	yes	N/A	0.786	0.113	0.295	5e-24
Q4VA61	2053	Down syndrome cell adhesi	no	N/A	0.780	0.110	0.280	6e-22
Q8TD84	2053	Down syndrome cell adhesi	no	N/A	0.780	0.110	0.280	6e-22
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	no	N/A	0.831	0.042	0.282	2e-19
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.865	0.049	0.257	9e-19
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.855	0.048	0.247	2e-15
A2A8L5	1898	Receptor-type tyrosine-pr	no	N/A	0.666	0.102	0.319	2e-15

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 113/279 (40%), Positives = 142/279 (50%), Gaps = 54/279 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVI 61
           P L+Y FI+QTLQPGP VSLKC A GNPTP ISW LDG+PL  + RF++GQY+++HGDVI
Sbjct: 423 PVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDVI 482

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           SHVNIS V VED G Y C A NR G   H+A + +Y  P     ++L+      +   SG
Sbjct: 483 SHVNISHVMVEDGGEYACIAENRAGRVQHAARLNIYGLP----YIRLIP----KVTAVSG 534

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL-STGHSGNYT 180
           +   ++C V  G P   I W + G  +  D    IR   +   SL+I+ +     SG YT
Sbjct: 535 ETLNLKCPVA-GYPIEEIHWERGGRELPDD----IRQRVQPDGSLTISPVQKNSDSGVYT 589

Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
           C A N                           GHS                S  + V VP
Sbjct: 590 CWARN-------------------------KQGHSA-------------RRSGEVTVIVP 611

Query: 241 PHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNG 278
           P I PF F E L EG+RT+  C V  GD PL L W K+G
Sbjct: 612 PSIEPFAFQEGLAEGMRTRTVCGVSRGDPPLKLIWLKDG 650

Cell adhesion molecule.
Drosophila melanogaster (taxid: 7227)

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score =  112 bits (280), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 125/281 (44%), Gaps = 52/281 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRFVMGQYMSLHGDVI 61
           P++I  F ++ + P  PVSL C   G P P I+W LD  P L G    + Q ++  G+V+
Sbjct: 407 PKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPILKGGSHRISQMITSEGNVV 466

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           S++NISS +V D G+Y+CTA N  G   + A + V   P   + +K +T+        +G
Sbjct: 467 SYLNISSSQVRDGGVYRCTANNSAGVVLYQARINV-RGPASIRPMKNITA-------IAG 518

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
               + C V  G P  +I W KN                                 N   
Sbjct: 519 RDTYIHCRVI-GYPYYSIKWYKNS--------------------------------NLLP 545

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC-VASNTVASDNHSSNLRVNVP 240
                VA +N+ + L++++    +          G YTC V      S + S ++ V VP
Sbjct: 546 FNHRQVAFENNGT-LKLSDVQKEVD--------EGEYTCNVLVQPQLSTSQSVHVTVKVP 596

Query: 241 PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281
           P I PF F     G R  + CVV SGDLP+++ W K+G  I
Sbjct: 597 PFIQPFEFPRFSIGQRVFIPCVVVSGDLPITITWQKDGRPI 637

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Homo sapiens (taxid: 9606)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score =  111 bits (278), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 125/281 (44%), Gaps = 52/281 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRFVMGQYMSLHGDVI 61
           P++I  F ++ + P  PVSL C   G P P ++W LD  P L G    + Q ++  G+V+
Sbjct: 407 PKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGHRISQMITSEGNVV 466

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           S++NISS +V D G+Y+CTA N  G   + A + V   P   + +K +T+        +G
Sbjct: 467 SYLNISSSQVRDGGVYRCTANNSAGVVLYQARINV-RGPASIRPMKNITA-------IAG 518

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
               + C V  G P  +I W KN                                 N   
Sbjct: 519 RDTYIHCRVI-GYPYYSIKWYKNA--------------------------------NLLP 545

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC-VASNTVASDNHSSNLRVNVP 240
                VA +N+ + L++++    +          G YTC V      S + S ++ V VP
Sbjct: 546 FNHRQVAFENNGT-LKLSDVQKEVD--------EGEYTCNVLVQPQLSTSQSVHVTVKVP 596

Query: 241 PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281
           P I PF F     G R  + CVV SGDLP+++ W K+G  I
Sbjct: 597 PFIQPFEFPRFSIGQRVFIPCVVVSGDLPITITWQKDGRPI 637

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score =  111 bits (278), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 125/281 (44%), Gaps = 52/281 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRFVMGQYMSLHGDVI 61
           P++I  F ++ + P  PVSL C   G P P ++W LD  P L G    + Q ++  G+V+
Sbjct: 407 PKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGHRISQMITSEGNVV 466

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           S++NISS +V D G+Y+CTA N  G   + A + V   P   + +K +T+        +G
Sbjct: 467 SYLNISSSQVRDGGVYRCTANNSAGVVLYQARINV-RGPASIRPMKNITA-------IAG 518

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
               + C V  G P  +I W KN                                 N   
Sbjct: 519 RDTYIHCRVI-GYPYYSIKWYKNA--------------------------------NLLP 545

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC-VASNTVASDNHSSNLRVNVP 240
                VA +N+ + L++++    +          G YTC V      S + S ++ V VP
Sbjct: 546 FNHRQVAFENNGT-LKLSDVQKEVD--------EGEYTCNVLVQPQLSTSQSVHVTVKVP 596

Query: 241 PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281
           P I PF F     G R  + CVV SGDLP+++ W K+G  I
Sbjct: 597 PFIQPFEFPRFSIGQRVFIPCVVVSGDLPITITWQKDGRPI 637

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus musculus GN=Dscaml1 PE=1 SV=2

 Score =  104 bits (260), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 115/282 (40%), Gaps = 55/282 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVI 61
           P+++  F ++ + PG   SL C A G P P ++W LD  P+  D      QY    G  I
Sbjct: 408 PRIVSSFSEKVVNPGEQFSLMCAAKGAPPPTVTWALDDEPVVRDGSHRTNQYTMSDGTTI 467

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           SH+N++  ++ D G+Y+CTA N VGS  + A + V   P             R+I   +G
Sbjct: 468 SHMNVTGPQIRDGGVYRCTARNSVGSAEYQARINVRGPPS--------IRAMRNITAVAG 519

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
               + C V  G P  +I W K+ L                                   
Sbjct: 520 RDTLINCRVI-GYPYYSIKWYKDAL----------------------------------- 543

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTG-HSGNYTC-VASNTVASDNHSSNLRVNV 239
                +  DNH   +  N    +L +  +  G   G Y C V      S + S ++ V V
Sbjct: 544 -----LLPDNHRQVVFEN---GTLKLTDVQKGMDEGEYLCSVLIQPQLSISQSVHVAVKV 595

Query: 240 PPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281
           PP I PF F     G    + CVV SGD+P+ + W K+G  I
Sbjct: 596 PPLIQPFEFPPASIGQLLYIPCVVSSGDMPIRITWRKDGQVI 637

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Mus musculus (taxid: 10090)

>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2

 Score =  104 bits (260), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 115/282 (40%), Gaps = 55/282 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVI 61
           P+++  F ++ + PG   SL C A G P P ++W LD  P+  D      QY    G  I
Sbjct: 408 PRIVSSFSEKVVNPGEQFSLMCAAKGAPPPTVTWALDDEPIVRDGSHRTNQYTMSDGTTI 467

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           SH+N++  ++ D G+Y+CTA N VGS  + A + V   P             R+I   +G
Sbjct: 468 SHMNVTGPQIRDGGVYRCTARNLVGSAEYQARINVRGPPS--------IRAMRNITAVAG 519

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
               + C V  G P  +I W K+ L                                   
Sbjct: 520 RDTLINCRVI-GYPYYSIKWYKDAL----------------------------------- 543

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTG-HSGNYTC-VASNTVASDNHSSNLRVNV 239
                +  DNH   +  N    +L +  +  G   G Y C V      S + S ++ V V
Sbjct: 544 -----LLPDNHRQVVFEN---GTLKLTDVQKGMDEGEYLCSVLIQPQLSISQSVHVAVKV 595

Query: 240 PPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281
           PP I PF F     G    + CVV SGD+P+ + W K+G  I
Sbjct: 596 PPLIQPFEFPPASIGQLLYIPCVVSSGDMPIRITWRKDGQVI 637

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Homo sapiens (taxid: 9606)

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 125/315 (39%), Gaps = 73/315 (23%)

Query: 19   PVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78
            P+ L CIA+G P P ++W  DG PL        Q  +L G  +  + IS+ +VED+G Y 
Sbjct: 3545 PLELTCIASGIPAPKMTWMKDGRPLPQ----TDQVQTLGGGEV--LRISTAQVEDTGRYT 3598

Query: 79   CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD--PP 136
            C A++  G       +RV+  P         T   R I V    +  ++C   K D  PP
Sbjct: 3599 CLASSPAGDDDKEYLVRVHVPPNIAG-----TDEPRDITVLRNRQVTLEC---KSDAVPP 3650

Query: 137  LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196
              I+WL+NG  + +   + I S G Y   L I     G + NYTCVASN          L
Sbjct: 3651 PVITWLRNGERLQATPRVRILSGGRY---LQINNADLGDTANYTCVASNIAGKTTREFIL 3707

Query: 197  RVN--------------------------------EYTSSLSIATLSTGHS--------- 215
             VN                                  T     A L+  H+         
Sbjct: 3708 TVNVPPNIKGGPQSLVILLNKSTVLECIAEGVPTPRITWRKDGAVLAGNHARYSILENGF 3767

Query: 216  -----------GNYTCVASNTVASDNHSSNLRVNVPPHIGPF-TFGELMEGVRTQVACVV 263
                       G Y C+A+N   +D    +L+V+VPP I P  T   ++  V+T +AC  
Sbjct: 3768 LHIQSAHVTDTGRYLCMATNAAGTDRRRIDLQVHVPPSIAPGPTNMTVIVNVQTTLACEA 3827

Query: 264  QSGDLPLSLQWYKNG 278
                 P S+ W KNG
Sbjct: 3828 TGIPKP-SINWRKNG 3841

Homo sapiens (taxid: 9606)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 94.4 bits (233), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 130/322 (40%), Gaps = 70/322 (21%)

Query: 17   GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
            G  V L C A G P P ++W  DG PL  D   MG ++  + D  S V +  +R  D+G 
Sbjct: 3232 GQEVRLDCEADGQPPPDVAWLKDGSPLGQD---MGPHLRFYLDGGSLV-LKGLRASDAGA 3287

Query: 77   YQCTATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD 134
            Y C A N  G  ++ H+ ++ V      P  +K     S ++    G+   + C V +G 
Sbjct: 3288 YTCVAHNPAGEDARLHTVNVLV------PPTIKQGADGSGTLVSRPGELVTMVCPV-RGS 3340

Query: 135  PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194
            PP+ +SWLK+GLP+       +  SG    +L I+ +    +G +TCVA++     + + 
Sbjct: 3341 PPIHVSWLKDGLPLPLSQRTLLHGSGH---TLRISKVQLADAGIFTCVAASPAGVADRNF 3397

Query: 195  NLRVN--------------------------------------------------EYTSS 204
             L+V                                                   E   S
Sbjct: 3398 TLQVQVPPVLEPVEFQNDVVVVRGSLVELPCEARGVPLPLVSWMKDGEPLLSQSLEQGPS 3457

Query: 205  LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI---GPFTFGELMEGVRTQVAC 261
            L +  +  G SG Y+CVA +          L V  PPHI   G  T   L  G   ++ C
Sbjct: 3458 LQLEAVGAGDSGTYSCVAVSEAGEARRHFQLTVMEPPHIEDSGQPTELSLTPGAPMELLC 3517

Query: 262  VVQSGDLPLSLQWYKNGLAISQ 283
              Q    P ++ W+K+G A+++
Sbjct: 3518 DAQGTPQP-NITWHKDGQALTR 3538

Homo sapiens (taxid: 9606)

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 132/319 (41%), Gaps = 70/319 (21%)

Query: 20   VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
            + L C A G P P I+W  DG  L  D+ V G ++  + D  + V +  +R  DSG Y C
Sbjct: 3269 IRLHCEAEGQPPPDITWLKDGGLL--DQHV-GPHLRFYLDGSTLV-LKGLRTADSGAYTC 3324

Query: 80   TATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
             A N  G  ++ H+ ++ V      P  +K    ++ ++   +G+   + C V +G PP+
Sbjct: 3325 VAHNPAGEDARLHTVNVLV------PPTIKQQAGDTGTLVSRTGELVTMVCPV-QGSPPI 3377

Query: 138  TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR 197
             +SWLK+GLP+       + SSG    +L I+ +    SG +TCVA++     + +  L 
Sbjct: 3378 HVSWLKDGLPLPLSQRTLLHSSGR---TLRISQVQLADSGVFTCVAASPAGVADRNFTLL 3434

Query: 198  V--------------------------------------------------NEYTSSLSI 207
            V                                                   E    L +
Sbjct: 3435 VLVPPILEPVEFQNNVMAAQGSEVVLPCEARGSPLPLVSWMKDGEPLLPQSLEQGPGLKL 3494

Query: 208  ATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI---GPFTFGELMEGVRTQVACVVQ 264
             ++S G +G Y+C A++          L V  PPHI   G  +   L  G   ++ C  +
Sbjct: 3495 ESVSVGDAGTYSCTAASEAGEARRHFQLTVMDPPHIEESGETSELSLTPGAHLELLCEAR 3554

Query: 265  SGDLPLSLQWYKNGLAISQ 283
             G  P ++ W+K+G A+ +
Sbjct: 3555 -GIPPPNITWHKDGQALRR 3572

Mus musculus (taxid: 10090)

>sp|A2A8L5|PTPRF_MOUSE Receptor-type tyrosine-protein phosphatase F OS=Mus musculus GN=Ptprf PE=1 SV=1

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 95/213 (44%), Gaps = 19/213 (8%)

Query: 21  SLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVE-DSGIYQC 79
           S  C ATG P P I+W   G  ++  RF + ++    G V+    I  +RV+ D  IY+C
Sbjct: 51  SFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL---RIQPLRVQRDEAIYEC 107

Query: 80  TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTI 139
           TATN +G    SA + V +    P     +    +   V  G  A + C    G+P   I
Sbjct: 108 TATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLC-AAGGNPDPEI 166

Query: 140 SWLKNGLPI---LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS-SN 195
           SW K+ LP+    S+  I    SG    +L I +      G Y CVA+N+  +   + +N
Sbjct: 167 SWFKDFLPVDPAASNGRIKQLRSG----ALQIESSEESDQGKYECVATNSAGTRYSAPAN 222

Query: 196 L--RVNEYTSSLSIATLST----GHSGNYTCVA 222
           L  RV       SI   S     G S N TCVA
Sbjct: 223 LYVRVRRVAPRFSIPPSSQEVMPGGSVNLTCVA 255

The first PTPase domain has enzymatic activity, while the second one seems to affect the substrate specificity of the first one.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
380026479	1155	PREDICTED: Down syndrome cell adhesion m	0.924	0.232	0.401	8e-54
270004557	1892	hypothetical protein TcasGA2_TC003918 [T	0.931	0.143	0.398	5e-51
195428435	1860	GK16751 [Drosophila willistoni] gi|19415	0.917	0.143	0.393	3e-50
307201299	2051	Down syndrome cell adhesion molecule [Ha	0.903	0.128	0.383	3e-48
332028703	1703	Down syndrome cell adhesion molecule-lik	0.903	0.154	0.380	3e-48
307203269	1397	Down syndrome cell adhesion molecule [Ha	0.855	0.178	0.391	7e-47
195588390	2851	GD13085 [Drosophila simulans] gi|1941959	0.917	0.093	0.384	9e-47
242004281	1849	Down syndrome cell adhesion molecule pre	0.769	0.121	0.418	6e-46
328788851	2004	PREDICTED: Down syndrome cell adhesion m	0.773	0.112	0.408	7e-46
383853528	1974	PREDICTED: Down syndrome cell adhesion m	0.773	0.113	0.408	8e-46

>gi|380026479|ref|XP_003696979.1| PREDICTED: Down syndrome cell adhesion molecule-like protein Dscam2-like [Apis florea]

 Score =  216 bits (551), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 137/341 (40%), Positives = 183/341 (53%), Gaps = 72/341 (21%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
           PQL+YKFI+QT+QPGP VSLKCIATGNPTPH SW LDG+PL   DRF++GQY+++HGDVI
Sbjct: 9   PQLLYKFIEQTIQPGPSVSLKCIATGNPTPHFSWTLDGFPLPQNDRFMIGQYVTVHGDVI 68

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG-QPQDVKLVTSNSRSIKVHS 120
           SHVNIS V VED G Y+CTA NR+    HSA + +Y  P  +P        N  ++   +
Sbjct: 69  SHVNISVVHVEDGGEYRCTAANRMAKVHHSARLNIYGLPHVRPM------GNYAAV---A 119

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
           G+   ++C V  G P  +I+W K+G  + +     +  +G  T  L     ST H G YT
Sbjct: 120 GETTVIKCPVA-GFPIASITWEKDGKVLPTSRRQEVFPNG--TLVLHHVDRSTDH-GAYT 175

Query: 181 CVASNTVA-SDNHSSNLRVN---------------------------EYTSSLSIATL-- 210
           C A N    SD+ + ++ V                            E  S L I  L  
Sbjct: 176 CTAKNKQGRSDSQTVHIEVKVPPKIDPFSFPANIQEGARVHVVCVVSEGDSPLKITWLKD 235

Query: 211 --------------------------STGHSGNYTCVASNTVASDNHSSNLRVNVPPHIG 244
                                     +T H+GNYTCVASN  A  + +++L V+VPP I 
Sbjct: 236 GRPLNSTETTTHHIGEYDLTLMIQSATTAHNGNYTCVASNDAAETSRTASLLVHVPPTIA 295

Query: 245 PFTFG-ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
           PF+F  +L EGVR QV C+V+ GD P ++ W K+G AI+ P
Sbjct: 296 PFSFNKDLSEGVRAQVTCMVEKGDPPFTIAWSKDGEAIAGP 336

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004557|gb|EFA01005.1| hypothetical protein TcasGA2_TC003918 [Tribolium castaneum]

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 134/336 (39%), Positives = 179/336 (53%), Gaps = 65/336 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVI 61
           P L+Y FI+QTLQPGP VSLKC A+GNPTP I+W LDG+PL    RFV+GQY+++HGDVI
Sbjct: 445 PILLYSFIEQTLQPGPAVSLKCSASGNPTPQITWTLDGFPLPSHGRFVIGQYVTVHGDVI 504

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           SHVNIS V VED G Y CTA NR G  +HSA + VY  P     ++L+      +   +G
Sbjct: 505 SHVNISHVMVEDGGEYTCTAENRAGKSSHSARLNVYGMPY----IRLIP----KVTAVAG 556

Query: 122 DRAGVQCLVTKGDPPLTISWLKNG--LP------ILSDAEITI----------------- 156
           +   ++C V  G P   I W ++G  LP      +L D  + I                 
Sbjct: 557 ETLQLKCPVA-GYPIEEIHWERSGRELPDDLRQKVLKDGTLIIHPVEKKADSGVYTCWAR 615

Query: 157 -------RSSGEYT-------SSLSIA-TLSTGHSGNYTCVASN--------------TV 187
                  R SGE +       S   +  TL  G   + TC  +               TV
Sbjct: 616 NKQGHSARRSGEVSVIVPPKVSPFYVEDTLHMGDRASLTCSVTKGDLPLTITWRKNGRTV 675

Query: 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFT 247
              +  S  +V+++TS L I  LS+ H+GNY+CV  N  A  +H+  L VNVPP I PF+
Sbjct: 676 EPAHMVSITQVDQFTSILVIEKLSSDHNGNYSCVVRNLAAEVSHTHQLVVNVPPIIEPFS 735

Query: 248 FGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
           F + L EG+RT+  C V SGD PL + W K+G A++
Sbjct: 736 FQDGLSEGMRTRTVCGVSSGDPPLVVSWLKDGQALT 771

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195428435|ref|XP_002062278.1| GK16751 [Drosophila willistoni] gi|194158363|gb|EDW73264.1| GK16751 [Drosophila willistoni]

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 131/333 (39%), Positives = 169/333 (50%), Gaps = 66/333 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVI 61
           P L+Y FI+QTLQPGP VSLKC A GNPTP ISW LDG+PL  + RF++GQY+++HGDVI
Sbjct: 389 PVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDVI 448

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           SHVNIS V VED G Y C A NR G   H+A + +Y  P     ++L+      +   SG
Sbjct: 449 SHVNISHVMVEDGGEYACIAENRAGRVQHAARLNIYGLP----YIRLIP----KVTAVSG 500

Query: 122 DRAGVQCLVTKGDPPLTISWLKNG--LP------ILSDAEITI----------------- 156
           +   ++C V  G P   I W + G  LP      +  D  +TI                 
Sbjct: 501 ETLNLKCPVA-GYPIEEIHWERGGRELPDDIRQRVQPDGSLTISPVQKNSDSGVYTCWAR 559

Query: 157 -------RSSGEYTSSL---------SIATLSTGHSGNYTCVA--------------SNT 186
                  R SGE T  +         +I  L+ G   + TC                S  
Sbjct: 560 NKQGHSARRSGEVTVIVPPKLSPFQTNILQLNMGDRASLTCSVVKGDLPLTINWRKDSRP 619

Query: 187 VASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPF 246
           +    H S  +V++Y S L I  L + H+GNY+CV  N+ A   +S  L VNVPP I PF
Sbjct: 620 IDPTQHMSVKQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENSQALLVNVPPSIEPF 679

Query: 247 TFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNG 278
            F E L EG+RT+  C V  GD PL L W K+G
Sbjct: 680 AFQEGLAEGMRTRTVCGVSRGDAPLKLIWLKDG 712

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201299|gb|EFN81146.1| Down syndrome cell adhesion molecule [Harpegnathos saltator]

 Score =  198 bits (503), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 170/336 (50%), Gaps = 73/336 (21%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVI 61
           P L+Y FI+QTLQPGP VSLKC A GNPTP +SW LDG+PL  + RFV+GQY+++HGDVI
Sbjct: 400 PVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVSWALDGFPLPTNGRFVIGQYVTVHGDVI 459

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           SHVNIS V VED G Y CTA NR G  TH+A + VY  P     ++L+      +   +G
Sbjct: 460 SHVNISHVMVEDGGEYSCTAENRAGKVTHAARLNVYGLP----YIRLIP----KVTAVAG 511

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL-STGHSGNYT 180
           +   ++C V  G P   I W +    +  D    + S G    +L I+++   G +G YT
Sbjct: 512 ETLRLKCPVA-GYPIEEIKWERANRELPDDLRQKVLSDG----TLMISSVQKKGDAGVYT 566

Query: 181 CVASNTVASDNHSS------------------NLRVNEYTS----------SLSIATLST 212
           C A N        S                  +L + E T+           LSI  L  
Sbjct: 567 CWARNKQGHSARRSGDVAVIVPPKISPFTADRDLHLGERTTLTCSVTRGDLPLSITWLKD 626

Query: 213 G-----------------------------HSGNYTCVASNTVASDNHSSNLRVNVPPHI 243
           G                             H+GNY+CVA N  A  +H+  L V+VPP I
Sbjct: 627 GRSMGPSERVTVTNMDQYNSILMIESLSPDHNGNYSCVARNVAAEVSHTQRLVVHVPPII 686

Query: 244 GPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNG 278
            PFTF E L EG+RT+  C V +GD PL++ W K+G
Sbjct: 687 EPFTFQEGLSEGMRTRTVCGVAAGDPPLTISWLKDG 722

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028703|gb|EGI68735.1| Down syndrome cell adhesion molecule-like protein [Acromyrmex echinatior]

 Score =  197 bits (502), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 128/336 (38%), Positives = 170/336 (50%), Gaps = 73/336 (21%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVI 61
           P L+Y FI+QTLQPGP VSLKC A GNPTP +SW LDG+PL  + RFV+GQY+++HGDVI
Sbjct: 143 PVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVSWALDGFPLPTNGRFVIGQYVTVHGDVI 202

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           SHVNIS V VED G Y CTA NR G  TH+A + VY  P     ++L+      +   +G
Sbjct: 203 SHVNISHVMVEDGGEYSCTAENRAGKVTHAARLNVYGLP----YIRLIP----KVTAVAG 254

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL-STGHSGNYT 180
           +   ++C V  G P   I W +    +  D    + + G    +L I+++   G +G YT
Sbjct: 255 ETLRLKCPVA-GYPIEEIKWERANRELPDDLRQKVLTDG----TLMISSVQKKGDAGVYT 309

Query: 181 CVASNTVASDNHSS------------------NLRVNEYTS----------SLSIATLST 212
           C A N        S                  +L + E T+           LSI  L  
Sbjct: 310 CWARNKQGHSARRSGDVAVIVPPKISPFTADRDLHLGERTTLTCSVTRGDLPLSITWLKD 369

Query: 213 G-----------------------------HSGNYTCVASNTVASDNHSSNLRVNVPPHI 243
           G                             H+GNY+CVA N  A  +H+  L V+VPP I
Sbjct: 370 GRSMGPSERVTVTNMDQYNSILMIESLSPDHNGNYSCVARNVAAEVSHTQRLVVHVPPII 429

Query: 244 GPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNG 278
            PFTF E L EG+RT+  C V +GD PL++ W K+G
Sbjct: 430 EPFTFQEGLSEGMRTRTVCGVAAGDPPLTISWLKDG 465

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203269|gb|EFN82424.1| Down syndrome cell adhesion molecule [Harpegnathos saltator]

 Score =  193 bits (491), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 125/319 (39%), Positives = 170/319 (53%), Gaps = 70/319 (21%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
           PQL+YKFI+QT+QPGP VSLKCIA GNPTPH SW LDG+PL   DRF++GQY+++HGDVI
Sbjct: 138 PQLLYKFIEQTMQPGPSVSLKCIAMGNPTPHFSWTLDGFPLPQNDRFMIGQYVTVHGDVI 197

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           SHVNIS+VRVED G Y+C+A NRV    H+A + +Y  P     V+ +  N  ++   +G
Sbjct: 198 SHVNISAVRVEDGGEYRCSAVNRVARAHHAARLNIYGLP----HVRAM-GNYAAV---AG 249

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
           +   ++C V  G P  +I+W K+G  + +     +  +G  T  L     ST   G YTC
Sbjct: 250 ETTVIKCPVA-GFPIASITWEKDGQILPTSRRQEVSQNG--TLVLHRVDSSTDR-GAYTC 305

Query: 182 VASNTVA-SDNHSSNLRVN---------------------------EYTSSLSIATL--- 210
            A N    SD+ + ++ V                            E  S L I  L   
Sbjct: 306 TAKNKQGRSDSQTIHIEVKVPPKIDPFSFPANIQAGARVHVTCAVSEGDSPLKITWLKDG 365

Query: 211 -------------------------STGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGP 245
                                    ST H+GNYTCVASN  A  + +++L V+VPP I P
Sbjct: 366 RPLKPREATTHHIGEFDLALRIQSASTAHNGNYTCVASNDAAKTSRTASLLVHVPPTIAP 425

Query: 246 FTF-GELMEGVRTQVACVV 263
           F+F  +L EG+R QV C++
Sbjct: 426 FSFKKDLSEGLRAQVTCMI 444

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195588390|ref|XP_002083941.1| GD13085 [Drosophila simulans] gi|194195950|gb|EDX09526.1| GD13085 [Drosophila simulans]

 Score =  193 bits (490), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 128/333 (38%), Positives = 168/333 (50%), Gaps = 66/333 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVI 61
           P L+Y FI+QTLQPGP VSLKC A GNPTP ISW LDG+PL  + RF++GQY+++HGDVI
Sbjct: 423 PVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDVI 482

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           SHVNIS V VED G Y C A NR G   H+A + +Y  P     ++L+      +   SG
Sbjct: 483 SHVNISHVMVEDGGEYACIAENRAGRVQHAARLNIYGLP----YIRLIP----KVTAVSG 534

Query: 122 DRAGVQCLVTKGDPPLTISWLKNG--LP------ILSDAEITI----------------- 156
           +   ++C V  G P   I W + G  LP      +  D  +TI                 
Sbjct: 535 ETLNLKCPVA-GYPIEEIHWERGGRELPDDIRQRVQPDGSLTISPVQKNSDSGVYTCWAR 593

Query: 157 -------RSSGEYTSSL---------SIATLSTGHSGNYTC--VASNTVASDNHSSNLRV 198
                  R SGE T  +         +I  L+ G   + TC  V  +   + N   + R 
Sbjct: 594 NKQGHSARRSGEVTVIVPPKLSPFQTNILQLNMGDRASLTCSVVKGDLPLTINWRKDGRP 653

Query: 199 NEYTSSLSIA------------TLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPF 246
            + T  +S+              L + H+GNY+CV  N+ A   +S  L VNVPP I PF
Sbjct: 654 IDPTQHMSVKQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENSQALLVNVPPSIEPF 713

Query: 247 TFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNG 278
            F E L EG+RT+  C V  GD PL L W K+G
Sbjct: 714 AFQEGLAEGMRTRTVCGVSRGDPPLKLIWLKDG 746

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004281|ref|XP_002423033.1| Down syndrome cell adhesion molecule precursor, putative [Pediculus humanus corporis] gi|212505964|gb|EEB10295.1| Down syndrome cell adhesion molecule precursor, putative [Pediculus humanus corporis]

 Score =  190 bits (483), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/282 (41%), Positives = 150/282 (53%), Gaps = 58/282 (20%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGD 59
           S P LIYKFI+QT+QPGP VSLKCIATGNPTPH +W LDG+ L   DR V+GQY+++HGD
Sbjct: 436 SSPHLIYKFIEQTMQPGPSVSLKCIATGNPTPHFTWVLDGFSLPQNDRLVIGQYVTVHGD 495

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
           VISHVNISSV VED G Y+CTA NRVGS +HSA + +Y  P        +     +I   
Sbjct: 496 VISHVNISSVNVEDGGEYKCTAKNRVGSVSHSARLNIYGLP--------MVRPMNTIAAV 547

Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
           +G    +QC V  G P   I W K+G  LP+    E+                     S 
Sbjct: 548 AGHDLILQCPVA-GYPIAFIVWEKDGQLLPVNRRQEV---------------------SP 585

Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA-SDNHSSNLR 236
           N T V                        +  LS G  G Y C+A N     D+ +  + 
Sbjct: 586 NGTLVIRK---------------------VDNLSDG--GLYMCMAKNKQGHHDSKTVQIE 622

Query: 237 VNVPPHIGPFTFG-ELMEGVRTQVACVVQSGDLPLSLQWYKN 277
           V VPP I PF+F  +L EGVR  ++CVV+ GD P ++ W K+
Sbjct: 623 VKVPPRIAPFSFNKDLSEGVRAHLSCVVEKGDPPFTITWLKD 664

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788851|ref|XP_392224.4| PREDICTED: Down syndrome cell adhesion molecule-like protein CG42256-like [Apis mellifera]

 Score =  190 bits (482), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 114/279 (40%), Positives = 149/279 (53%), Gaps = 54/279 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
           PQL+YKFI+QT+QPGP VSLKCIATGNPTPH SW LDG+PL   DRF++GQY+++HGDVI
Sbjct: 478 PQLLYKFIEQTIQPGPSVSLKCIATGNPTPHFSWTLDGFPLPQNDRFMIGQYVTVHGDVI 537

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG-QPQDVKLVTSNSRSIKVHS 120
           SHVNIS V VED G Y+CTA NR+    HSA + +Y  P  +P        N  ++   +
Sbjct: 538 SHVNISVVHVEDGGEYRCTAANRMAKVHHSARLNIYGLPHVRPM------GNYAAV---A 588

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
           G+   ++C V  G P  +I+W K+G  + +     +  +G  T  L     ST H G YT
Sbjct: 589 GETTVIKCPVA-GFPIASITWEKDGKVLPTSRRQEVFPNG--TLVLHHVDRSTDH-GAYT 644

Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
           C A N                                          SD+ + ++ V VP
Sbjct: 645 CTAKNKQGR--------------------------------------SDSQTVHIEVKVP 666

Query: 241 PHIGPFTF-GELMEGVRTQVACVVQSGDLPLSLQWYKNG 278
           P I PF+F   + EG R  V CVV  GD PL + W K+G
Sbjct: 667 PKIDPFSFPANIQEGARVHVVCVVSEGDSPLKITWLKDG 705

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853528|ref|XP_003702274.1| PREDICTED: Down syndrome cell adhesion molecule-like protein Dscam2-like [Megachile rotundata]

 Score =  189 bits (481), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 114/279 (40%), Positives = 151/279 (54%), Gaps = 54/279 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
           PQL+YKFI+QT+QPGP VSLKCIATGNPTPH SW LDG+PL   DRF++GQY+++HGDVI
Sbjct: 450 PQLVYKFIEQTIQPGPSVSLKCIATGNPTPHFSWTLDGFPLPQNDRFMIGQYVTVHGDVI 509

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG-QPQDVKLVTSNSRSIKVHS 120
           SHVNIS V VED G YQCTA+NR+    HSA + +Y  P  +P        N  ++   +
Sbjct: 510 SHVNISVVHVEDGGDYQCTASNRMAKVHHSARLNIYGLPHVRPM------GNYAAV---A 560

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
           G+   ++C V  G P  +I+W K+G  + +     + ++G  T  L     ST   G YT
Sbjct: 561 GETTVIKCPVA-GFPIASITWEKDGKMLPTSRRQEVFANG--TLRLHHVDRSTDQ-GAYT 616

Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
           C A N                                          SD+ + ++ V VP
Sbjct: 617 CTAKNKQGR--------------------------------------SDSQTVHIDVKVP 638

Query: 241 PHIGPFTF-GELMEGVRTQVACVVQSGDLPLSLQWYKNG 278
           P I PF+F   + EG R  V+CVV  GD PL + W K+G
Sbjct: 639 PKIDPFSFPANIQEGARIHVSCVVSEGDSPLRITWLKDG 677

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.584	0.088	0.427	2.1e-40
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.642	0.091	0.364	3.8e-33
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.584	0.083	0.367	3.3e-32
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.707	0.102	0.293	3.3e-27
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.707	0.102	0.293	3.3e-27
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.707	0.103	0.293	6e-27
ZFIN|ZDB-GENE-030131-9765	2925	hmcn2 "hemicentin 2" [Danio re	0.591	0.058	0.342	1.8e-26
UNIPROTKB|F1SGT7	1656	F1SGT7 "Uncharacterized protei	0.707	0.124	0.297	2.7e-26
ZFIN|ZDB-GENE-041014-322	5616	hmcn1 "hemicentin 1" [Danio re	0.652	0.033	0.325	3.9e-25
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.707	0.102	0.297	4.3e-26

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 351 (128.6 bits), Expect = 2.1e-40, Sum P(2) = 2.1e-40
 Identities = 79/185 (42%), Positives = 109/185 (58%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVI 61
             P+L+Y F +QTLQPGP VSLKC+ATGNP P  +W LDG+P+    RF++GQY+++H DVI
Sbjct:   422 PELLYWFSEQTLQPGPTVSLKCVATGNPLPQFTWSLDGFPIPDSSRFLVGQYVTIHDDVI 481

Query:    62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
             SHVNIS+V+ ED G Y CTA N +G  +HSA + +Y  P   +++  +T  S S  +   
Sbjct:   482 SHVNISNVKEEDGGEYTCTAQNAIGKVSHSAKVNIYGLP-YIREMPKITGISGSDLI--- 537

Query:   122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST-GHSGNYT 180
                 V+C V  G P   I W ++G  +     I  R       +L I  L     +G YT
Sbjct:   538 ----VKCPVA-GYPIDKIHWERDGQTL----PINRRQRAYNNGTLIIEQLQRLEDAGTYT 588

Query:   181 CVASN 185
             C+A N
Sbjct:   589 CMAQN 593

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 302 (111.4 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
 Identities = 74/203 (36%), Positives = 106/203 (52%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG----DRFVMGQYMSLHG 58
             P+LIY FI+Q ++PGP +SLKC A+G+P P  +W LD  P+       RF +GQ++ + G
Sbjct:   439 PELIYTFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDMSG 498

Query:    59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
             DVISH+NIS VR +D G+Y+C A+N +GS  HSA + VY   G P  V+ +      IK 
Sbjct:   499 DVISHLNISHVRPDDGGLYKCVASNSMGSVQHSARLNVY---GPPY-VRAIGP----IKA 550

Query:   119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS-G 177
              +G+   V C    G P   I W K    + +     + S  +    L I  +  G   G
Sbjct:   551 VAGEDIIVHCPFA-GYPVEQIRWEKAHQELTTSNHYELASVAD-GGQLVIKNVEPGRDQG 608

Query:   178 NYTCVASNTVASD-NHSSNLRVN 199
              YTC+  +    +      L VN
Sbjct:   609 IYTCIVRSRAGEEARRDMQLNVN 631

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 288 (106.4 bits), Expect = 3.3e-32, Sum P(2) = 3.3e-32
 Identities = 68/185 (36%), Positives = 104/185 (56%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVI 61
             P +   F ++T++PGP V LKC+A GNPTP ISW+LDG  +A  DR+ +GQY++++GDV+
Sbjct:   430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV 489

Query:    62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
             S++NI+SV   D G+Y+C A ++VG   HSA + VY  P   Q  K          + +G
Sbjct:   490 SYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKA--------IVAG 541

Query:   122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNYT 180
             +   V C V  G P  +I W ++   +  + +  +  +G    +L I  +        YT
Sbjct:   542 ETLIVTCPVA-GYPIDSIVWERDNRALPINRKQKVFPNG----TLIIENVERNSDQATYT 596

Query:   181 CVASN 185
             CVA N
Sbjct:   597 CVAKN 601

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 220 (82.5 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
 Identities = 66/225 (29%), Positives = 101/225 (44%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRFVMGQYMSLHGDVI 61
             P++I  F ++ + P  PVSL C   G P P ++W LD  P L G    + Q ++  G+V+
Sbjct:   407 PKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGHRISQMITSEGNVV 466

Query:    62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
             S++NISS +V D G+Y+CTA N  G   + A + V   P   + +K +T+ +       G
Sbjct:   467 SYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVR-GPASIRPMKNITAIA-------G 518

Query:   122 DRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
                 + C V  G P  +I W KN   LP  +  ++   ++G  T  LS         G Y
Sbjct:   519 RDTYIHCRVI-GYPYYSIKWYKNANLLPF-NHRQVAFENNG--TLKLSDVQKEVDE-GEY 573

Query:   180 TC---VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221
             TC   V      S +    ++V  +         S G      CV
Sbjct:   574 TCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCV 618

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 220 (82.5 bits), Expect = 3.3e-27, Sum P(3) = 3.3e-27
 Identities = 66/225 (29%), Positives = 101/225 (44%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRFVMGQYMSLHGDVI 61
             P++I  F ++ + P  PVSL C   G P P ++W LD  P L G    + Q ++  G+V+
Sbjct:   407 PKIISAFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGHRISQMITSEGNVV 466

Query:    62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
             S++NISS +V D G+Y+CTA N  G   + A + V   P   + +K +T+ +       G
Sbjct:   467 SYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVR-GPASIRPMKNITAIA-------G 518

Query:   122 DRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
                 + C V  G P  +I W KN   LP  +  ++   ++G  T  LS         G Y
Sbjct:   519 RDTYIHCRVI-GYPYYSIKWYKNANLLPF-NHRQVAFENNG--TLKLSDVQKEVDE-GEY 573

Query:   180 TC---VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221
             TC   V      S +    ++V  +         S G      CV
Sbjct:   574 TCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCV 618

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 224 (83.9 bits), Expect = 6.0e-27, Sum P(2) = 6.0e-27
 Identities = 66/225 (29%), Positives = 102/225 (45%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVI 61
             P++I  F ++ + PG PVSL C   G P P I+W LD  P+  D    + Q ++  G+V+
Sbjct:   393 PKIISAFSEKVVSPGEPVSLMCNVKGTPLPTITWTLDEDPIVKDGSHRISQIITSEGNVV 452

Query:    62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
             S++NIS+ +V D G+Y+CTA N  G   + A + V   P   + +K +T+ +       G
Sbjct:   453 SYLNISNTQVRDGGVYRCTANNSAGVVLYQARINVR-GPASIRPMKNITAIA-------G 504

Query:   122 DRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
                 + C V  G P  +I W KN   LP  +  ++   ++G  T  LS         G Y
Sbjct:   505 RDTYIHCRVI-GYPYYSIKWYKNSNLLPF-NHRQVAFENNG--TLKLSDVQKEVDE-GEY 559

Query:   180 TC---VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221
             TC   V      S +    ++V  +         S G      CV
Sbjct:   560 TCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCV 604

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

ZFIN|ZDB-GENE-030131-9765 hmcn2 "hemicentin 2" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
 Identities = 65/190 (34%), Positives = 93/190 (48%)

Query:    20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
             V+L+C A G P P ISW  DG+PL     +  +   L  D  S + IS V + DSGIY C
Sbjct:  1034 VTLECKAKGTPQPQISWLRDGHPL----LLSPRIRLLSAD--STLRISPVHLSDSGIYTC 1087

Query:    80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTI 139
              A +R G    + D++V   P   +     T  +  + V  G    + C   +G PP T+
Sbjct:  1088 VARSRAGLAELNFDLQVQAPPAVER-----TEPTEQVAVVQGSSVTLTC-EARGVPPPTL 1141

Query:   140 SWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
             SWLK+G P+     + +   G+ T  L ++ +    +G Y+CVASN   S   + NL V 
Sbjct:  1142 SWLKDGQPLSLHRNLLL--DGQETRFL-LSDVGPSDAGLYSCVASNQAGSSTKTFNLTVL 1198

Query:   200 E---YTSSLS 206
             E    T SLS
Sbjct:  1199 EPPKITGSLS 1208

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0043589 "skin morphogenesis" evidence=IGI

GO:0090497 "mesenchymal cell migration" evidence=IGI

GO:0035122 "embryonic medial fin morphogenesis" evidence=IGI

GO:0030198 "extracellular matrix organization" evidence=IGI

UNIPROTKB|F1SGT7 F1SGT7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 222 (83.2 bits), Expect = 2.7e-26, Sum P(2) = 2.7e-26
 Identities = 67/225 (29%), Positives = 101/225 (44%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRFVMGQYMSLHGDVI 61
             P++I  F ++ + P  PVSL C   G P P I+W LD  P L G    + Q ++  G+V+
Sbjct:   159 PKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPILKGGSHRISQMITSEGNVV 218

Query:    62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
             S++NISS +V D G+Y+CTA N  G   + A + V   P   + +K +T+ +       G
Sbjct:   219 SYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVR-GPASIRPMKNITAIA-------G 270

Query:   122 DRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
                 + C V  G P  +I W KN   LP  +  ++   ++G  T  LS         G Y
Sbjct:   271 RDTYIHCRVI-GYPYYSIKWYKNSNLLPF-NHRQVAFENNG--TLKLSDVQKEVDE-GEY 325

Query:   180 TC---VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221
             TC   V      S +    ++V  +         S G      CV
Sbjct:   326 TCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCV 370

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-041014-322 hmcn1 "hemicentin 1" [Danio rerio (taxid:7955)]

 Score = 246 (91.7 bits), Expect = 3.9e-25, Sum P(2) = 3.9e-25
 Identities = 70/215 (32%), Positives = 102/215 (47%)

Query:    20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
             V L C A G PTP I W  DG  ++  R    + + +  D  S + +++V   DSG Y C
Sbjct:  3250 VQLVCRAEGTPTPEIQWLKDGMTIS--RTAQ-KNIKISPDG-STLTVTAVHTSDSGKYTC 3305

Query:    80 TATNRVGSQTHSADMRVYDAP---GQ-PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP 135
              ATN+ G +    ++ VY  P   G  P   +L T    SI +        +C V  G P
Sbjct:  3306 VATNQAGEEDRIFNLNVYVPPLIQGNGPAAKELTTVLDSSINI--------EC-VASGSP 3356

Query:   136 PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195
             P  ++WLKNGLP+   ++I + S+G+    L IA       G+YTCVASN    DN    
Sbjct:  3357 PPQLNWLKNGLPLPVSSQIRLLSAGQV---LRIARAQVSDGGSYTCVASNRAGVDNRHYT 3413

Query:   196 LRVN-----EYTSSLSIATLSTGHSGNYTCVASNT 225
             L+V      +   S    T+  G + ++ C+A  T
Sbjct:  3414 LQVYVPPSLDGAGSTEEVTVVKGSTASFICIADGT 3448

GO:0005509 "calcium ion binding" evidence=IEA

GO:0033333 "fin development" evidence=IMP

GO:0071711 "basement membrane organization" evidence=IMP

GO:0033334 "fin morphogenesis" evidence=IMP

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
 Identities = 67/225 (29%), Positives = 101/225 (44%)

Query:     3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRFVMGQYMSLHGDVI 61
             P++I  F ++ + P  PVSL C   G P P I+W LD  P L G    + Q ++  G+V+
Sbjct:   407 PKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPILKGGSHRISQMITSEGNVV 466

Query:    62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
             S++NISS +V D G+Y+CTA N  G   + A + V   P   + +K +T+ +       G
Sbjct:   467 SYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVR-GPASIRPMKNITAIA-------G 518

Query:   122 DRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
                 + C V  G P  +I W KN   LP  +  ++   ++G  T  LS         G Y
Sbjct:   519 RDTYIHCRVI-GYPYYSIKWYKNSNLLPF-NHRQVAFENNG--TLKLSDVQKEVDE-GEY 573

Query:   180 TC---VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221
             TC   V      S +    ++V  +         S G      CV
Sbjct:   574 TCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCV 618

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	291
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-17
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-14
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-14
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-13
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-12
smart00409	85	smart00409, IG, Immunoglobulin	1e-12
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	2e-12
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	3e-11
smart00410	85	smart00410, IG_like, Immunoglobulin like	5e-11
smart00409	85	smart00409, IG, Immunoglobulin	5e-11
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	5e-10
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	7e-10
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	1e-09
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	1e-09
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	1e-09
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-09
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	5e-09
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	5e-09
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	9e-09
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	9e-08
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	3e-07
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	4e-07
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	4e-07
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	4e-07
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	4e-07
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	5e-07
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	5e-07
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	6e-07
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	1e-06
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	1e-06
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	1e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	1e-06
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	1e-06
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	2e-06
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	2e-06
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	2e-06
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	2e-06
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	5e-06
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	5e-06
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	7e-06
cd05762	98	cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like	8e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	1e-05
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	1e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	1e-05
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	2e-05
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	2e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-05
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	2e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	3e-05
cd05859	101	cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (I	3e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	4e-05
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	6e-05
cd05866	92	cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-lik	6e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	6e-05
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	6e-05
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	7e-05
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	7e-05
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	7e-05
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	7e-05
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	1e-04
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	1e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	1e-04
cd04973	79	cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like	2e-04
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	3e-04
cd05873	87	cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like	3e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	4e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	5e-04
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	5e-04
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	6e-04
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	8e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	9e-04
cd05895	76	cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-	0.001
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	0.001
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	0.001
cd05854	85	cd05854, Ig6_Contactin-2, Sixth Ig domain of conta	0.001
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	0.002
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	0.002
cd05758	98	cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (I	0.002
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	0.002
cd05773	109	cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-	0.002
cd04973	79	cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 75.0 bits (185), Expect = 2e-17
 Identities = 35/97 (36%), Positives = 46/97 (47%), Gaps = 16/97 (16%)

Query: 8  KFIQQ----TLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVM---GQYMSLHGD 59
          KF Q+     +Q G      C  TG+P P +SW  DG PL   DRF +   G   +L   
Sbjct: 2  KFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLT-- 59

Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
                IS+V+ +D G Y C ATN  G    SA++ V
Sbjct: 60 ------ISNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 66.7 bits (163), Expect = 1e-14
 Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 8/71 (11%)

Query: 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG 75
           G  V+L C A GNP P+I+W  DG PL      +           S + I SV +EDSG
Sbjct: 1  EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVAS--------GSTLTIKSVSLEDSG 52

Query: 76 IYQCTATNRVG 86
          +Y C A N  G
Sbjct: 53 LYTCVAENSAG 63

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 2/85 (2%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           + ++V  G+ A   C VT GDP  T+SW K+G P+ S     +   G  T +L+I+ +  
Sbjct: 8   KDVEVQEGESARFTCTVT-GDPDPTVSWFKDGQPLRSSDRFKVTYEG-GTYTLTISNVQP 65

Query: 174 GHSGNYTCVASNTVASDNHSSNLRV 198
              G YTCVA+N+      S+ L V
Sbjct: 66  DDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 64.4 bits (156), Expect = 1e-13
 Identities = 26/73 (35%), Positives = 38/73 (52%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
          V+L C+A+G P P I+W  +G PL        +         S + IS+V +EDSG Y C
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 80 TATNRVGSQTHSA 92
           A+N  G+ + S 
Sbjct: 61 VASNSAGTVSASV 73

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 61.8 bits (150), Expect = 1e-12
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRFVMGQYMSLHGDVISHVNISS 68
            T++ G  V+L C A+G+P P ++W   G        RF +           S + IS+
Sbjct: 3  SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSV-----SRSGSTSTLTISN 57

Query: 69 VRVEDSGIYQCTATNRVGSQTHSADMRV 96
          V  EDSG Y C ATN  GS +    + V
Sbjct: 58 VTPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 61.8 bits (150), Expect = 1e-12
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRFVMGQYMSLHGDVISHVNISS 68
            T++ G  V+L C A+G+P P ++W   G        RF +           S + IS+
Sbjct: 3  SVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSV-----SRSGSTSTLTISN 57

Query: 69 VRVEDSGIYQCTATNRVGSQTHSADMRV 96
          V  EDSG Y C ATN  GS +    + V
Sbjct: 58 VTPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 11/77 (14%)

Query: 22 LKCIATGNPTPHISW-KLDGYPLAGDRFVMGQY-MSLHGDVISHVNISSVRVEDSGIYQC 79
          L+CIA G PTP ISW K+ G  L  DR     +  +L         I +V  ED G Y+C
Sbjct: 3  LECIAEGLPTPEISWIKIGG-ELPADRTKFENFNKTLK--------IDNVSEEDDGEYRC 53

Query: 80 TATNRVGSQTHSADMRV 96
          TA+N +GS  H+  + V
Sbjct: 54 TASNSLGSARHTISVTV 70

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
          V LKC A+GNP P I+W  DG P   +  + G  +      +    + SV   DSG Y C
Sbjct: 12 VRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLI---LESVVPSDSGKYTC 68

Query: 80 TATNRVGSQTHSADMRV 96
             N+ GS  H+  + V
Sbjct: 69 IVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL-PILSDAEITIRSSGEYTSSLSIATL 171
             S+ V  G+   + C  + G PP  ++W K G   +      ++  SG  TS+L+I+ +
Sbjct: 1   PPSVTVKEGESVTLSCEAS-GSPPPEVTWYKQGGKLLAESGRFSVSRSG-STSTLTISNV 58

Query: 172 STGHSGNYTCVASNTVASDNHSSNLRV 198
           +   SG YTC A+N+  S +  + L V
Sbjct: 59  TPEDSGTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL-PILSDAEITIRSSGEYTSSLSIATL 171
             S+ V  G+   + C  + G PP  ++W K G   +      ++  SG  TS+L+I+ +
Sbjct: 1   PPSVTVKEGESVTLSCEAS-GSPPPEVTWYKQGGKLLAESGRFSVSRSG-STSTLTISNV 58

Query: 172 STGHSGNYTCVASNTVASDNHSSNLRV 198
           +   SG YTC A+N+  S +  + L V
Sbjct: 59  TPEDSGTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 54.7 bits (132), Expect = 5e-10
 Identities = 21/66 (31%), Positives = 33/66 (50%)

Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  TI+WLK+G P   +  I      +   +L + ++    SG YTC+  N   S NH
Sbjct: 20  GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINH 79

Query: 193 SSNLRV 198
           +  + V
Sbjct: 80  TYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 54.5 bits (131), Expect = 7e-10
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 8/73 (10%)

Query: 24 CIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN 83
          C A+GNP P   W  +G PLA +     +     GD+     I+ + + DSG+YQC A N
Sbjct: 21 CKASGNPRPAYRWLKNGQPLASE----NRIEVEAGDLR----ITKLSLSDSGMYQCVAEN 72

Query: 84 RVGSQTHSADMRV 96
          + G+   SA++ V
Sbjct: 73 KHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
          G    L C A G P P I+W+L+G P+            + G  +    +S+V+  D+ +
Sbjct: 1  GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPR--RRVDGGTLI---LSNVQPNDTAV 55

Query: 77 YQCTATNRVG 86
          YQC A+N  G
Sbjct: 56 YQCNASNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 53.9 bits (129), Expect = 1e-09
 Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 14/97 (14%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWK--LDGYPLAGDRFVMGQYMSLHGDV 60
            +  KF       G  V+L+C A GNP P I W+  L+  P   +       +S+ G V
Sbjct: 2  ADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAE-------ISMSGAV 54

Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
          +   NI   + ED G Y+C A N  G   H A  RVY
Sbjct: 55 LKIFNI---QPEDEGTYECEAENIKGKDKHQA--RVY 86

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 53.4 bits (128), Expect = 1e-09
 Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 9/78 (11%)

Query: 22 LKCIATGNPTPHISWKLDG---YPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78
          L+C ATG+PTP I+W+ DG   +P A +R +   ++    DV     I  V++ED+G+Y 
Sbjct: 3  LECAATGHPTPQIAWQKDGGTDFPAARERRM---HVMPEDDVFF---IVDVKIEDTGVYS 56

Query: 79 CTATNRVGSQTHSADMRV 96
          CTA N  GS + +A + V
Sbjct: 57 CTAQNTAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)

Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY---TSSLSIATLSTGHSGNYTCV 182
           + CL + G PP TI+WLKNG P+ S     +RSS      +S+L+I+ ++   SG YTCV
Sbjct: 3   LTCLAS-GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 183 ASNTVASDNHS 193
           ASN+  + + S
Sbjct: 62  ASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 52.1 bits (125), Expect = 5e-09
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query: 17 GPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG 75
          G  V+L+C A GNP P I W K+DG   +     M   +         + I +++ ED G
Sbjct: 16 GQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAV---------LKIPNIQFEDEG 66

Query: 76 IYQCTATNRVGSQTHSADMRVY 97
           Y+C A N  G  TH   + V 
Sbjct: 67 TYECEAENIKGKDTHQGRIYVQ 88

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLS 172
              +V  G+ A ++C   +G P  T+SW K+G P+ L +  + I   G    +L IA   
Sbjct: 4   SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDG----NLLIAEAR 59

Query: 173 TGHSGNYTCVASNTV 187
               G Y CVA+N V
Sbjct: 60  KSDEGTYKCVATNMV 74

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
          G  V LKC+A+GNP P I+W  D  PL        +           +++ +++ EDSG 
Sbjct: 9  GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKW------TLSLKNLKPEDSGK 62

Query: 77 YQCTATNRVG 86
          Y C  +NR G
Sbjct: 63 YTCHVSNRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 47.8 bits (114), Expect = 9e-08
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
            G    + C    G+P   I+WLK+G P+         +SG   S+L+I ++S   SG Y
Sbjct: 1   EGQSVTLTCPAE-GNPVPNITWLKDGKPL--PESNRFVASG---STLTIKSVSLEDSGLY 54

Query: 180 TCVASN 185
           TCVA N
Sbjct: 55  TCVAEN 60

Length = 63

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 47.5 bits (113), Expect = 3e-07
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 13/82 (15%)

Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVM----GQYMSLHGDVISHVNIS 67
          T+  G  ++L C   G+P P +SW  +   LA  D + +    G+Y SL         I 
Sbjct: 12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASL--------TIK 63

Query: 68 SVRVEDSGIYQCTATNRVGSQT 89
           V  EDSG Y     N+ G +T
Sbjct: 64 GVSSEDSGKYGIVVKNKYGGET 85

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 13/74 (17%)

Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
           L+  PP        G+P P +SW+ DG PL  D       +   G+++    I+  R  
Sbjct: 15 VLECSPPR-------GHPEPTVSWRKDGQPLNLDN--ERVRIVDDGNLL----IAEARKS 61

Query: 73 DSGIYQCTATNRVG 86
          D G Y+C ATN VG
Sbjct: 62 DEGTYKCVATNMVG 75

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 20 VSLKCIATGNPTPHISWKLDGYP---LAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
          VSL C A G+P P   W ++G         R+ +     + G+++     +  + +D+G 
Sbjct: 22 VSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-----VGGNLVIS---NPSKAKDAGR 73

Query: 77 YQCTATNRVGS 87
          YQC A+N VG+
Sbjct: 74 YQCLASNIVGT 84

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
          G  V   C A G P P I+W   G  L+ DR    +++ L    +    IS V + D G 
Sbjct: 2  GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDR----RHLVLSSGTL---RISRVALHDQGQ 54

Query: 77 YQCTATNRVGSQTHSADMRV 96
          Y+C A N VGSQ   A + V
Sbjct: 55 YECQAVNIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 23/66 (34%), Positives = 31/66 (46%)

Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+ WLKNG     +  I          SL + ++     GNYTCV  N   S NH
Sbjct: 20  GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 79

Query: 193 SSNLRV 198
           + +L V
Sbjct: 80  TYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 21 SLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80
          SL+C A G P P ++W  +G  +      + + ++L  +  S ++IS+VR ED+G Y C 
Sbjct: 2  SLRCHAEGIPLPRLTWLKNGMDITPK---LSKQLTLIANG-SELHISNVRYEDTGAYTCI 57

Query: 81 ATNRVG 86
          A N  G
Sbjct: 58 AKNEAG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 13/101 (12%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI- 61
          P++ Y   Q  ++    ++L C A+G+P P I+W+         R +  +  +L G ++ 
Sbjct: 3  PKITYVENQTAMELEEQITLTCEASGDPIPSITWR------TSTRNISSEEKTLDGHIVV 56

Query: 62 -SHVNISS-----VRVEDSGIYQCTATNRVGSQTHSADMRV 96
           SH  +SS     ++  D+G Y CTA+N +G  + S  + V
Sbjct: 57 RSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 46.5 bits (110), Expect = 6e-07
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 16/99 (16%)

Query: 2  HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWK--LDGYPLA-GDRF------VMGQ 52
           P +I +   +T       +L C A G P P I+WK   DG+  + GD+       V GQ
Sbjct: 2  QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQ 60

Query: 53 YMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS 91
          +        S ++I  V++ DSG Y C A +R+G    S
Sbjct: 61 HGE------SSLHIKDVKLSDSGRYDCEAASRIGGHQKS 93

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAE---ITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
           ++C  T   P L   W K+G  +    +   I IR+  +  S L I       SG YTCV
Sbjct: 3   LKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKN-SELQINKAKLADSGEYTCV 61

Query: 183 ASNTVASDNHSSNL 196
             N + +D  ++N+
Sbjct: 62  VENILGNDTVTANV 75

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 132 KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191
            G P  T++W K+G P+     + I ++   T SL I       SG YT    N     +
Sbjct: 9   SGRPTPTVTWSKDGKPLKLSGRVQIETTASST-SLVIKNAERSDSGKYTLTLKNPAGEKS 67

Query: 192 HSSNLRV 198
            + N++V
Sbjct: 68  ATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
          G    L C   G PTP+I+W ++G P+ G      +++S  G +I    ++ V+  D+ +
Sbjct: 1  GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVS-SGALI----LTDVQPSDTAV 55

Query: 77 YQCTATNRVG 86
          YQC A NR G
Sbjct: 56 YQCEARNRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
          V  +C   G+P P + W+ +   L   R  +    SL         I +V   D G Y C
Sbjct: 1  VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSL--------KIRNVTAGDEGSYTC 52

Query: 80 TATNRVGSQTHSADMRV 96
           A N VG    SA + V
Sbjct: 53 EAENMVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
           + C    G PP TISW +NG              G   S+L+++++++  SG YTCVASN
Sbjct: 20  LTCSAEGGPPPPTISWYRNG-----SISGGSGGLGSSGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           + +  RS+ V  G+ A   C V  G+P  T++W++ G  I+S     I S+ EY S+  I
Sbjct: 6   ILTKPRSLTVSEGESARFSCDV-DGEPAPTVTWMREGQIIVSSQRHQITST-EYKSTFEI 63

Query: 169 ATLSTGHSGNYTCVASNT 186
           + +     GNYT V  N+
Sbjct: 64  SKVQMSDEGNYTVVVENS 81

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMG-QYMSLHGDVISHVNI--SSVRVED 73
          G P +L C A G PTP I W  +G PL  D+       + L    +  + +        D
Sbjct: 16 GDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSD 75

Query: 74 SGIYQCTATNRVGSQTHSA 92
           G+Y C A N +G      
Sbjct: 76 EGVYVCVAHNSLGEAVSRN 94

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 14/96 (14%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI- 61
          P++ Y    QT      ++L C A G+P P I+W+         R       SL G ++ 
Sbjct: 3  PKITY-LENQTAVELEQITLTCEAEGDPIPEITWR------RATRNFSEGDKSLDGRIVV 55

Query: 62 ------SHVNISSVRVEDSGIYQCTATNRVGSQTHS 91
                S + +  V++ D+G Y C A+NR+G    S
Sbjct: 56 RGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQQS 91

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 10/73 (13%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGD----VISHVNISSVRVED-S 74
          + +KC A GNP P  SW  +G     ++      +++  D    VI   N++  R ED  
Sbjct: 1  IVIKCEAKGNPPPTFSWTRNGTHFDPEK---DPRVTMKPDSGTLVID--NMNGGRAEDYE 55

Query: 75 GIYQCTATNRVGS 87
          G YQC A+N +G+
Sbjct: 56 GEYQCYASNELGT 68

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P     WLKNG P+ S+  I +  +G+    L I  LS   SG Y CVA N   +   
Sbjct: 25  GNPRPAYRWLKNGQPLASENRIEV-EAGD----LRITKLSLSDSGMYQCVAENKHGTIYA 79

Query: 193 SSNLRV 198
           S+ L V
Sbjct: 80  SAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
          V  +C A GNPTP + W  +G     +  + G  +      +    + SV   D G Y C
Sbjct: 12 VKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---MESVVPSDKGNYTC 68

Query: 80 TATNRVGSQTHSADMRV 96
             N  GS  H+  + V
Sbjct: 69 VVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 43.4 bits (102), Expect = 7e-06
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
          V L C A GNP P   W  +G  +  D     +Y  + G++I   N S V+  DSG YQC
Sbjct: 22 VILNCEARGNPVPTYRWLRNGTEI--DTESDYRYSLIDGNLIIS-NPSEVK--DSGRYQC 76

Query: 80 TATNRVGS 87
           ATN +GS
Sbjct: 77 LATNSIGS 84

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

 Score = 43.4 bits (102), Expect = 8e-06
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
           KV +G+   + C VT G  P+T +W+K    I     I I ++ E +S L+I      H 
Sbjct: 11  KVRAGESVELFCKVT-GTQPITCTWMKFRKQIQEGEGIKIENT-ENSSKLTITEGQQEHC 68

Query: 177 GNYTCVASNTVASDNHSSNLRV 198
           G YT    N + S     NL V
Sbjct: 69  GCYTLEVENKLGSRQAQVNLTV 90

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 10/74 (13%)

Query: 127 QCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184
           QC V  GDP  T+ W K    LP    AEI          SL I  ++ G  G+YTC A 
Sbjct: 4   QCEV-GGDPVPTVLWRKEDGELPK-GRAEIL------DDKSLKIRNVTAGDEGSYTCEAE 55

Query: 185 NTVASDNHSSNLRV 198
           N V     S++L V
Sbjct: 56  NMVGKIEASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
          T   G  V+L C A G P P ++W  DG P+        +  S + D  S + I  V   
Sbjct: 14 TANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE----EKYSFNEDG-SEMTILDVDKL 68

Query: 73 DSGIYQCTATNRVGSQTHSADMRVY 97
          D   Y C A N+ G Q     ++V+
Sbjct: 69 DEAEYTCIAENKAGEQEAEIHLKVF 93

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 14/79 (17%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
             +  G  V+L C A GNP P+ +W  DG PL+          S            +V 
Sbjct: 8  PTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLS----------SSQNGFF----TPNVS 53

Query: 71 VEDSGIYQCTATNRVGSQT 89
           EDSG Y C A+N  G +T
Sbjct: 54 AEDSGTYTCVASNGGGGKT 72

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
          + L+CIA G PTP + W     PL+ +R                + + +V   D G Y C
Sbjct: 1  LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKT-------LQLDNVLESDDGEYVC 53

Query: 80 TATNRVGSQTHS 91
          TA N  GS  H 
Sbjct: 54 TAENSEGSARHH 65

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 17/92 (18%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGY---------PLAGDRFVMGQYMSLHGDVISHVNIS 67
          G  V+ +C ATGNP P I W+ +G          P +  RF + Q     GD    + I+
Sbjct: 1  GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ----TGD----LTIT 52

Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDA 99
          +V+  D G Y C   N  GS    A + V D 
Sbjct: 53 NVQRSDVGYYICQTLNVAGSILTKAYLEVTDV 84

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
           G    + C V+ G P + ++W K G  +     +    +   + +L+I+ ++   SG YT
Sbjct: 1   GSSVTLTCSVS-GPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYT 59

Query: 181 CVA 183
           CV 
Sbjct: 60  CVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLA---GDRFVMGQYMSLHGDVISHVNISSVRVED 73
          G PV L C A G P P I WK DG  L     +R       SL   +I+ V  S     D
Sbjct: 14 GGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSL---LITSVVHSKHNKPD 70

Query: 74 SGIYQCTATN 83
           G YQC A N
Sbjct: 71 EGFYQCVAQN 80

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 12/80 (15%)

Query: 21 SLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77
          ++ C A+GNP P I+W  D  P+   +  R    +  +L         I +    D G Y
Sbjct: 2  TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQ--------IENSEESDQGKY 53

Query: 78 QCTATNRVGSQTHSADMRVY 97
          +C ATN  G++ +SA   +Y
Sbjct: 54 ECVATNSAGTR-YSAPANLY 72

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143267 cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 135 PPLTISWLKNGLPILSDAEITIRSSGE-----YTSSLSIATLSTGHSGNYTCVASNTVAS 189
           PP  I WLK+   ++ +      S        Y S L +       SG YT +A N  A 
Sbjct: 31  PPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90

Query: 190 DNHSSNLRVN 199
            +++  L++ 
Sbjct: 91  KSYTFALQIQ 100

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. Length = 101

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
          V+L C  +G P   ++W  +G  L     V       +      + IS+V  EDSG Y C
Sbjct: 4  VTLTCSVSGPPQVDVTWFKEGKGLEESTTV---GTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 80 TA 81
            
Sbjct: 61 VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 27/79 (34%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 6  IYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHV 64
          I      ++  G  V+L C A G P  P ISW  +G    G            G   S +
Sbjct: 4  ITVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGG--------LGSSGSTL 55

Query: 65 NISSVRVEDSGIYQCTATN 83
           +SSV  EDSG Y C A+N
Sbjct: 56 TLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143274 cd05866, Ig1_NCAM-2, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 24 CIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGD-VISHVNISSVRVEDSGIYQCTAT 82
          C A G P       +D Y   G++ V  Q + +  + V S + I +  +ED+GIY+C AT
Sbjct: 22 CTAIGEPE-----SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT 76

Query: 83 NRVGSQTHSA 92
          +  G QT  A
Sbjct: 77 DAKG-QTQEA 85

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 92

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 132 KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191
           K  P  TISW K    + + + I I   G    SL I  ++    G YTC A N     N
Sbjct: 11  KAAPKPTISWSKGTELLTNSSRICIWPDG----SLEILNVTKSDEGKYTCFAENFFGKAN 66

Query: 192 HSSNLRV 198
            + +L V
Sbjct: 67  STGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 21 SLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80
          +L C A GNP P ISW  +G P+            + GD I     S V+   S +YQC 
Sbjct: 5  TLICRANGNPKPSISWLTNGVPIE--IAPTDPSRKVDGDTII---FSKVQERSSAVYQCN 59

Query: 81 ATNRVG 86
          A+N  G
Sbjct: 60 ASNEYG 65

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 124 AGVQCLVTKGDPPLTISWLKNGLPILSD--AEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
           A ++C   +G P   ++WLKNG+ I      ++T+ ++G   S L I+ +    +G YTC
Sbjct: 1   ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLIANG---SELHISNVRYEDTGAYTC 56

Query: 182 VASNTVASDNHSSNLRVNE 200
           +A N    D   S+L V +
Sbjct: 57  IAKNEAGVDEDISSLFVED 75

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 11/77 (14%)

Query: 17 GPPVSLKCIATGNPTPHISW--KLDGYPLAGDRFVMGQYMSLHGDV----ISHVNISSVR 70
          G   S  C  TG P P I+W  ++ G     +  +M +   + G+V    I  + I + +
Sbjct: 1  GETASFHCDVTGRPPPEITWEKQVHG----KENLIM-RPNHVRGNVVVTNIGQLVIYNAQ 55

Query: 71 VEDSGIYQCTATNRVGS 87
           +D+G+Y CTA N  G 
Sbjct: 56 PQDAGLYTCTARNSGGL 72

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
          G  V   C+ATG PTP I+W+L+   +     V       +G +     I  V+  D G 
Sbjct: 1  GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLT----IRDVKESDQGA 56

Query: 77 YQCTATNRVG 86
          Y C A N  G
Sbjct: 57 YTCEAINTRG 66

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 13 TLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVM----GQYMSLHGDVISHVNIS 67
          T+  G  ++L C   GNP P + W K D      + + +    G+Y SL         I 
Sbjct: 12 TIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASL--------TIK 63

Query: 68 SVRVEDSGIYQCTATNRVGSQT 89
           V  EDSG Y     N+ G +T
Sbjct: 64 GVTSEDSGKYSINVKNKYGGET 85

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 21 SLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
           LKC AT   P+    W  DG  L          +  +    S + I+  ++ DSG Y C
Sbjct: 2  VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIR-NKKKNSELQINKAKLADSGEYTC 60

Query: 80 TATNRVGSQTHSA 92
             N +G+ T +A
Sbjct: 61 VVENILGNDTVTA 73

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 13/85 (15%)

Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
              V  G+   + C    G+PP   +W K+G+P+ S        +           +S  
Sbjct: 8   PTVVFEGEDVTLTCSAP-GNPPPNYTWYKDGVPLSSSQNGFFTPN-----------VSAE 55

Query: 175 HSGNYTCVASNTVASDNHSSNLRVN 199
            SG YTCVASN       S+ + + 
Sbjct: 56  DSGTYTCVASNGGGG-KTSNPVTLT 79

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 14/84 (16%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN----ISSVRVE 72
          G   +L+C A G+P P I W              G+ +S     + + N    I    V+
Sbjct: 1  GQRATLRCKARGDPEPAIHW----------ISPDGKLISNSSRTLVYDNGTLDILITTVK 50

Query: 73 DSGIYQCTATNRVGSQTHSADMRV 96
          D+G + C A+N  G  T + ++ +
Sbjct: 51 DTGSFTCIASNAAGEATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 7/73 (9%)

Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
            H GD   ++C +   D   +I+W K+G+ +  +    I  +GE    + I       SG
Sbjct: 6   AHPGDLLQLRCRLR--DDVQSINWTKDGVQLGENNRTRI--TGEE---VQIKDAVPRDSG 58

Query: 178 NYTCVASNTVASD 190
            Y CV S+   SD
Sbjct: 59  LYACVTSSPSGSD 71

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. Length = 79

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
           V  G+P   I+WLK+  P+       I  S +   +LS+  L    SG YTC  SN    
Sbjct: 17  VASGNPRPDITWLKDNKPLTPT---EIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE 73

Query: 190 DN 191
            N
Sbjct: 74  IN 75

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143281 cd05873, Ig_Sema4D_like, Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
          Q+T + G    LKC    N    + WK DG  L        +Y+     ++    I +  
Sbjct: 5  QRTFKLGNNAELKCSPKSN-LARVVWKFDGKVL---TPESAKYLLYRDGLL----IFNAS 56

Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYD 98
            D+G YQC +  +  ++  +  +  Y 
Sbjct: 57 EADAGRYQCLSVEKSKAKLFTQTVAKYV 84

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloprotease-dependent process. Sem4D may mediate its effects in its membrane bound form, and/or its cleaved form. Length = 87

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 11/76 (14%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78
          V + C A G+P P I+W  DG  +    +F    ++S  G    ++ I  V V D G Y+
Sbjct: 1  VQIPCSAQGDPEPTITWNKDGVQVTESGKF----HISPEG----YLAIRDVGVADQGRYE 52

Query: 79 CTATNRVGSQTHSADM 94
          C A N +G    S  M
Sbjct: 53 CVARNTIGYA--SVSM 66

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
            +GDP  TI+W K+G+ +    +  I   G     L+I  +     G Y CVA NT+   
Sbjct: 7   AQGDPEPTITWNKDGVQVTESGKFHISPEG----YLAIRDVGVADQGRYECVARNTIGYA 62

Query: 191 NHSSNL 196
           + S  L
Sbjct: 63  SVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 7/75 (9%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
          +  +C  TG PTP + W  +G     D  +   Y  +  +   ++ +  +   D G YQC
Sbjct: 2  IVFECEVTGKPTPTVKWVKNG-----DMVIPSDYFKIVKE--HNLQVLGLVKSDEGFYQC 54

Query: 80 TATNRVGSQTHSADM 94
           A N VG+    A +
Sbjct: 55 IAENDVGNVQAGAQL 69

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 27 TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG 86
          +G PTP ++W  DG PL       G+         + + I +    DSG Y  T  N  G
Sbjct: 9  SGRPTPTVTWSKDGKPLKLS----GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAG 64

Query: 87 SQTHSADMRV 96
           ++ + +++V
Sbjct: 65 EKSATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSL--HGDVISHVNISS 68
          Q  +  G      C   G P   ISW    +   G++ V  Q +S+  + DV S + I +
Sbjct: 9  QGEISVGESKFFLCQVIGEPK-DISW----FSPNGEKLVTQQQISVVQNDDVRSTLTIYN 63

Query: 69 VRVEDSGIYQCTATNRVGSQT 89
            +ED+GIY+C AT+  G+++
Sbjct: 64 ANIEDAGIYKCVATDAKGTES 84

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 37.6 bits (87), Expect = 9e-04
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G P  T++W K+G PI S  E    S  E  S ++I  +       YTC+A N       
Sbjct: 29  GFPEPTMTWTKDGEPIESGEEKY--SFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEA 86

Query: 193 SSNLRV 198
             +L+V
Sbjct: 87  EIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 126 VQCLVTKGDPPLTISWLKNGLPILS----DAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
           ++C      P L   W KNG  I +    D +I IR   +  S L I+  S   +G Y C
Sbjct: 3   LRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKS-SELQISKASLADNGEYKC 61

Query: 182 VASNTVASDNHSSNL 196
           + S+ + +D+ ++N+
Sbjct: 62  MVSSKLGNDSVTANV 76

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. Length = 76

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)

Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMG-QYMSLHGDVISHVNISSVRVEDSGIYQ 78
          V+L C A  +P     WK++G  +   +F    +Y  + G++   V  +  +  D+G YQ
Sbjct: 22 VTLGCRARASPPATYRWKMNGTEI---KFAPESRYTLVAGNL---VINNPQKARDAGSYQ 75

Query: 79 CTATNRVGS 87
          C A NR G+
Sbjct: 76 CLAINRCGT 84

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 132 KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS-- 189
           K  PP  I W KNG  I        + SG    SL+I  ++   +GNYT V +N  A   
Sbjct: 8   KAYPPPEIQWYKNGKLISEKN--RTKKSG---HSLTIKDVTEEDAGNYTVVLTNKQAKLE 62

Query: 190 DNHSSNLRV 198
              +  L V
Sbjct: 63  KRLTFTLVV 71

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143262 cd05854, Ig6_Contactin-2, Sixth Ig domain of contactin-2

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 20  VSLKCIATGNPTPHIS--WKLDGYPLAGDRFVMGQYMSLHG-DVISHVNISSVRVEDSGI 76
           ++L+C A+ +PT  ++  W LD +P+  D+   G Y  +   + I  + I + ++  +G 
Sbjct: 3   LTLQCHASHDPTMDLTFTWSLDDFPIDLDK-PNGHYRRMEVKETIGDLVIVNAQLSHAGT 61

Query: 77  YQCTATNRVGSQTHSADMRVYDAP 100
           Y CTA   V S + SA + V   P
Sbjct: 62  YTCTAQTVVDSASASATLVVRGPP 85

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC proce sses. Length = 85

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G P   ISW+K G  + +D          +  +L I  +S    G Y C ASN++ S  H
Sbjct: 9   GLPTPEISWIKIGGELPADRTKF----ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARH 64

Query: 193 SSNLRV 198
           + ++ V
Sbjct: 65  TISVTV 70

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 132 KGDPPLTISWLKNGLP--ILSDAEITIRS-SGEYTSSLSIATLSTGHSGNYTCVASN 185
           KG+PP T SW +NG       D  +T++  SG           +  + G Y C ASN
Sbjct: 8   KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASN 64

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143235 cd05758, Ig5_KIRREL3-like, Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 17 GPPVSLKCIATGNPTP-HISWKLDGYPL---AGDRFVMGQYMSLHGDVISHVNISSVRVE 72
          G    ++C     P P  I W      L   +  R+ +    S  G V+S + IS+ +  
Sbjct: 16 GDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGG-VLSTLTISNTQES 74

Query: 73 D-SGIYQCTATNRVGSQT 89
          D    Y CTA N  GS T
Sbjct: 75 DFQTSYNCTAWNSFGSGT 92

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Length = 98

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)

Query: 128 CLVTKGDPPLTISWLKNGLP------ILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
               +G+P  T++W  NG        I ++    + +  EY   L     +  ++GNYT 
Sbjct: 4   PFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTL 63

Query: 182 VASNTVASDNHS 193
           VASN    D+ S
Sbjct: 64  VASNEYGQDSKS 75

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143250 cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-like domain of nephrin

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 20/101 (19%)

Query: 121 GDRAGVQCLVTK--GDPPLTISWLKNGLPI-LSD---AEITIRSSGEYTSSLSIATLSTG 174
           GD +    LV +  G P +   W KNG+P+ L +    E T  +   +TS L+I  +S  
Sbjct: 20  GDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAA 79

Query: 175 HS-GNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH 214
                +TC A N++  D             SL I  +ST  
Sbjct: 80  LDYALFTCTAHNSLGED-------------SLDIQLVSTSR 107

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the podocytes. Length = 109

>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 13/77 (16%)

Query: 15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDR--FVMGQYMSLHGDVISHVNISSVRVE 72
           PG  + L+C    +    I+W  DG  L  +    + G+           V I      
Sbjct: 7  HPGDLLQLRCRLR-DDVQSINWTKDGVQLGENNRTRITGEE----------VQIKDAVPR 55

Query: 73 DSGIYQCTATNRVGSQT 89
          DSG+Y C  ++  GS T
Sbjct: 56 DSGLYACVTSSPSGSDT 72

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4222|consensus	1281		99.96
KOG4194|consensus	873		99.96
KOG4221|consensus	1381		99.96
KOG4221|consensus	1381		99.95
PHA02785	326	IL-beta-binding protein; Provisional	99.95
KOG4222|consensus	1281		99.92
PHA02826	227	IL-1 receptor-like protein; Provisional	99.9
KOG4194|consensus	873		99.89
PHA02785	326	IL-beta-binding protein; Provisional	99.82
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.82
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.75
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.72
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.69
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.69
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.69
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.69
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.68
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.67
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.67
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.66
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.66
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.65
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.65
PHA02826	227	IL-1 receptor-like protein; Provisional	99.65
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.64
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.64
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.64
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.64
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.64
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.64
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.64
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.63
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.62
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.61
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.61
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.6
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.6
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.6
KOG3515|consensus	741		99.6
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.59
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.59
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.59
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.59
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.59
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.59
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.57
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.57
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.57
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.57
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.56
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.56
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.56
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.56
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.56
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.56
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.56
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.55
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.55
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.55
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.55
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.55
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.55
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.55
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.54
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.54
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.54
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.54
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.53
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.52
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.52
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.52
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.52
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.52
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.51
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.51
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.51
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.51
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.51
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.5
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.5
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.5
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.5
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.5
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.49
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.49
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.49
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.49
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.49
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.48
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.48
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.48
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.48
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.48
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.48
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.48
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.48
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.47
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.47
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.47
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.47
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.47
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.47
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.47
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.47
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.47
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.47
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.46
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.46
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.45
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.45
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.45
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.44
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.44
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.44
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.44
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.44
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.44
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.43
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.43
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.43
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.43
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.43
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.42
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.42
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.42
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.41
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.41
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.4
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.4
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.4
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.4
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.4
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.4
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.4
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.39
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.39
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.39
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.38
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.38
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.38
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.38
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.38
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.38
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.37
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.36
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.36
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.36
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.36
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.35
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.35
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.35
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.35
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.34
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.34
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.34
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.34
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.34
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.34
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.33
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.32
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.32
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.31
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.31
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.31
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.3
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.3
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.29
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.29
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.29
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.29
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.28
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.28
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.28
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.27
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.27
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.26
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.25
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.24
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.24
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.23
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.23
PHA03376	221	BARF1; Provisional	99.23
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.23
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.23
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.22
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.21
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.2
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.2
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.19
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.18
smart00409	86	IG Immunoglobulin.	99.18
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.18
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.18
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.17
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.17
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.17
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.17
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.17
KOG3515|consensus	741		99.17
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.16
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.16
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.15
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.15
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.14
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.13
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.11
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.1
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.09
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.08
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.07
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	99.06
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.06
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.05
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	99.05
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.04
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	99.04
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.03
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	99.03
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.01
smart00409	86	IG Immunoglobulin.	99.01
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.01
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.0
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	99.0
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	99.0
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.99
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.99
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.98
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.98
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.98
PHA03376	221	BARF1; Provisional	98.97
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.97
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.97
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.96
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.96
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.92
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.91
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.91
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.91
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.91
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.9
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.89
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.89
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.89
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.89
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.88
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.86
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.86
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.84
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.83
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.82
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.81
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.8
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.8
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.79
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.78
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.78
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.78
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.77
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.77
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.76
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.76
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.75
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.73
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.72
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.71
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.71
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.7
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.7
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.68
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.68
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.68
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.68
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.67
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.67
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.67
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.67
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.66
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.65
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.65
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.65
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.64
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.62
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.6
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.6
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.59
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.57
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.57
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.55
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.52
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.52
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.52
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.52
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.51
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.51
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.5
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.49
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.49
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.48
smart00407	75	IGc1 Immunoglobulin C-Type.	98.47
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.47
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.46
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.46
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.46
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.46
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.46
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.45
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.45
smart00407	75	IGc1 Immunoglobulin C-Type.	98.44
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.43
PHA03269	566	envelope glycoprotein C; Provisional	98.43
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.43
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.42
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.42
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.42
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.41
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.38
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.36
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.35
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.35
PHA03270	466	envelope glycoprotein C; Provisional	98.34
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.33
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.29
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.29
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.28
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.25
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	98.24
PHA02914	500	Immunoglobulin-like domain protein; Provisional	98.24
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.23
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.21
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	98.21
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.2
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.2
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.2
PHA03271	490	envelope glycoprotein C; Provisional	98.19
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.19
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.19
KOG1480|consensus	909		98.17
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.17
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.16
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.13
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	98.1
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.09
PHA03273	486	envelope glycoprotein C; Provisional	98.07
smart00406	81	IGv Immunoglobulin V-Type.	98.07
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.05
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.05
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.05
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.04
PHA03270	466	envelope glycoprotein C; Provisional	98.04
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.03
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.01
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.0
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	98.0
PHA02982	251	hypothetical protein; Provisional	98.0
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.97
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.94
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.94
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.91
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.87
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.84
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.83
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.82
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.79
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.79
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.76
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	97.68
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.66
smart00406	81	IGv Immunoglobulin V-Type.	97.59
PHA02633	63	hypothetical protein; Provisional	97.51
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.48
PHA03271	490	envelope glycoprotein C; Provisional	97.48
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.46
PHA02982	251	hypothetical protein; Provisional	97.37
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.29
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.29
PHA02914	500	Immunoglobulin-like domain protein; Provisional	97.27
PHA03273	486	envelope glycoprotein C; Provisional	97.21
PHA03269	566	envelope glycoprotein C; Provisional	97.17
KOG0613|consensus	1205		97.11
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.96
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.84
PHA02633	63	hypothetical protein; Provisional	96.68
PHA03042	286	CD47-like protein; Provisional	96.64
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.35
KOG4597|consensus	560		96.22
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	95.99
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.95
KOG1480|consensus	909		95.71
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.65
PHA02865	338	MHC-like TNF binding protein; Provisional	95.57
KOG0613|consensus	1205		95.48
PHA03042	286	CD47-like protein; Provisional	95.27
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.03
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	94.75
PHA02865	338	MHC-like TNF binding protein; Provisional	94.19
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	93.97
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	93.87
KOG4597|consensus	560		93.81
PHA03286	492	envelope glycoprotein E; Provisional	93.8
PHA03052	69	Hypothetical protein; Provisional	93.74
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	93.33
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	93.32
PHA03189	348	UL14 tegument protein; Provisional	93.13
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	92.22
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	92.02
PHA03052	69	Hypothetical protein; Provisional	91.94
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	90.13
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.0
PHA03112	141	IL-18 binding protein; Provisional	89.71
PHA03240	258	envelope glycoprotein M; Provisional	86.47
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	83.52
PHA03283	542	envelope glycoprotein E; Provisional	83.03
KOG1026|consensus	774		81.48
PHA03240	258	envelope glycoprotein M; Provisional	81.39
PHA03282	540	envelope glycoprotein E; Provisional	81.32

>KOG3513|consensus

Probab=100.00  E-value=6.7e-39  Score=266.99  Aligned_cols=260  Identities=30%  Similarity=0.529  Sum_probs=219.6

Q ss_pred             CCcceeecc-eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFI-QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~-~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|.+.+. ......|+.+.|.|.+.|.|.|+|.|.|.+......+...       .+....|.|.+++.+|+|.|+|.
T Consensus       240 ~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~-------~~~~~vL~I~nv~~~D~G~Y~C~  312 (1051)
T KOG3513|consen  240 APKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATY-------SNYGKVLKIPNVQYEDAGEYECI  312 (1051)
T ss_pred             CCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceee-------eccccEEEecccCcCCCeEEEEE
Confidence            566665544 5677899999999999999999999999766332222222       12224599999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCc---eEEe
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE---ITIR  157 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~---~~~~  157 (291)
                      +.|..|.......+.|...|.       .+..+....+..|+++.+.|.+ .|.|.|+++|++||.++....+   ..+.
T Consensus       313 AeN~~G~~~~~~~v~v~a~P~-------w~~~~~d~~~~~gs~v~~eC~a-~g~P~p~v~WlkNg~pl~~~~r~~~~~i~  384 (1051)
T KOG3513|consen  313 AENSRGSATHSGHVTVYAPPY-------WLQKPQDTEADTGSNVTLECKA-SGKPNPTVKWLKNGEPLEPAERDPRYKID  384 (1051)
T ss_pred             EecccccceeeEEEEEecCch-------hhcccceeEecCCCCeEEEEEe-cCCCCCceEEeeCCeecCccCCCcceEEe
Confidence            999999999999999998773       2346677888899999999999 7999999999999999986665   4444


Q ss_pred             ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec-------------------------------------
Q psy14540        158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE-------------------------------------  200 (291)
Q Consensus       158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~-------------------------------------  200 (291)
                           ...|.|.++...|+|.|.|.|+|..|....++.|.+..                                     
T Consensus       385 -----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~  459 (1051)
T KOG3513|consen  385 -----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVS  459 (1051)
T ss_pred             -----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEE
Confidence                 56799999999999999999999999888887777221                                     


Q ss_pred             -----------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEE
Q psy14540        201 -----------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACV  262 (291)
Q Consensus       201 -----------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~  262 (291)
                                       .+++|.|.+++.+|+|.|+|.|.|..|.......|.|..++.|...+... +..|+.++|+|.
T Consensus       460 W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce  539 (1051)
T KOG3513|consen  460 WLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCE  539 (1051)
T ss_pred             EEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEee
Confidence                             17999999999999999999999999999999999999999999977776 999999999999


Q ss_pred             eecCCC--CceEEEEECCEEcc
Q psy14540        263 VQSGDL--PLSLQWYKNGLAIS  282 (291)
Q Consensus       263 ~~~~~p--~~~v~W~~~~~~l~  282 (291)
                      + ..++  ...|.|.+||..+.
T Consensus       540 ~-shD~~ld~~f~W~~nG~~id  560 (1051)
T KOG3513|consen  540 A-SHDPSLDITFTWKKNGRPID  560 (1051)
T ss_pred             c-ccCCCcceEEEEEECCEEhh
Confidence            9 6555  46899999999874

>KOG3513|consensus

Probab=100.00  E-value=4.3e-31  Score=220.74  Aligned_cols=264  Identities=25%  Similarity=0.431  Sum_probs=200.9

Q ss_pred             Ccceeecceeee-ecCC--cEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecC-CCCCeEEE
Q psy14540          3 PQLIYKFIQQTL-QPGP--PVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR-VEDSGIYQ   78 (291)
Q Consensus         3 p~~~~~~~~~~v-~~g~--~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~   78 (291)
                      |.|...+....+ .+-+  .+.|.|.+.++|.+.++|++||.......+.....  .    ..+|.|.+.. ..|.|.|+
T Consensus        40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~--~----~G~lvI~~p~~~~d~G~Yq  113 (1051)
T KOG3513|consen   40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSV--L----GGTLVITNPDAALDQGIYQ  113 (1051)
T ss_pred             ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceee--e----cCceEecCCcchhhcceeE
Confidence            788877765443 3333  39999999999999999999999876222111111  1    2447787777 88999999


Q ss_pred             EEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc-CCC--ce
Q psy14540         79 CTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL-SDA--EI  154 (291)
Q Consensus        79 C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~-~~~--~~  154 (291)
                      |.++|..|. .+..+.|.....+..+      ......+.+.+|+.+.|.|....+.|.+++.|..+..+.. ..+  +.
T Consensus       114 C~AsN~~Gta~S~~~~l~~~~i~~F~------~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~  187 (1051)
T KOG3513|consen  114 CFASNKLGTAVSREARLQFGFIPKFK------KEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRV  187 (1051)
T ss_pred             EEeecccceeeccceeecccccccCc------cccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCccee
Confidence            999999886 4556666655544332      1233457899999999999988889999999988654432 222  22


Q ss_pred             EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC---CCceEEE----------------------------------
Q psy14540        155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD---NHSSNLR----------------------------------  197 (291)
Q Consensus       155 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~---~~~~~~~----------------------------------  197 (291)
                      ...    ..+.|.+..+...|.+.|.|.+.+.....   ...+.|.                                  
T Consensus       188 ~~~----~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LEC  263 (1051)
T KOG3513|consen  188 FSQ----ENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLEC  263 (1051)
T ss_pred             Eec----ccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEE
Confidence            222    25679999999999999999999843322   1122222                                  


Q ss_pred             -------------------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-c
Q psy14540        198 -------------------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-L  251 (291)
Q Consensus       198 -------------------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~  251 (291)
                                               ...+..+|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+....... +
T Consensus       264 fA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~  343 (1051)
T KOG3513|consen  264 FALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEA  343 (1051)
T ss_pred             EecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEe
Confidence                                     33348999999999999999999999999999999999999999988877766 9


Q ss_pred             cCCceEEEEEEeecCCCCceEEEEECCEEccC
Q psy14540        252 MEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ  283 (291)
Q Consensus       252 ~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~  283 (291)
                      ..|+.+++.|.+ .|.|.|+|+|++||.+|..
T Consensus       344 ~~gs~v~~eC~a-~g~P~p~v~WlkNg~pl~~  374 (1051)
T KOG3513|consen  344 DTGSNVTLECKA-SGKPNPTVKWLKNGEPLEP  374 (1051)
T ss_pred             cCCCCeEEEEEe-cCCCCCceEEeeCCeecCc
Confidence            999999999999 8999999999999998863

>KOG4222|consensus

Probab=99.96  E-value=1.3e-28  Score=204.76  Aligned_cols=269  Identities=26%  Similarity=0.462  Sum_probs=203.2

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeec--CCCCCeEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV--RVEDSGIYQ   78 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~d~G~y~   78 (291)
                      ++|.|+..|.++.+..|+.++|.|.+.+.|.+.++|+|+|+........ ..+........+-|.+..-  ...|.|.|+
T Consensus        30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~-shR~~lp~gsLf~l~~ahg~~a~~d~G~y~  108 (1281)
T KOG4222|consen   30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPG-SHRFLLPDGSLFLLRLAHGKKAGHDHGVYS  108 (1281)
T ss_pred             CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCC-CcceecCCccEEEEecccCCcccCCCceeE
Confidence            4799999999999999999999999999999999999999754311111 1111222222233443321  123899999


Q ss_pred             EEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe
Q psy14540         79 CTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR  157 (291)
Q Consensus        79 C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  157 (291)
                      |.+.+..|. .+....|.+.....      .....+..+.+..|+.+.|.|.-..+.|.+.+.|.|+|.++.-.....+.
T Consensus       109 cvasn~~g~avSr~a~L~vavlrd------dfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~  182 (1281)
T KOG4222|consen  109 CVASNRLGEAVSRGASLIVAVLRD------DFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA  182 (1281)
T ss_pred             eeecCccceeeecCceEEEEEech------hcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE
Confidence            999988776 34455555544331      12233445677789999999998889999999999999988622221111


Q ss_pred             ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc-eEEE---------------------------------------
Q psy14540        158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS-SNLR---------------------------------------  197 (291)
Q Consensus       158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~~~---------------------------------------  197 (291)
                      ..  ..+.|.|.++...|.|.|.|++.|..|..... ..+.                                       
T Consensus       183 li--sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwk  260 (1281)
T KOG4222|consen  183 LI--SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWK  260 (1281)
T ss_pred             Ee--cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeee
Confidence            11  14569999999999999999999998865432 2222                                       


Q ss_pred             ------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEee
Q psy14540        198 ------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQ  264 (291)
Q Consensus       198 ------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~  264 (291)
                                  +.....++.|..+.+.|+|.|.|.+.|..|...+...+.|+.+|.+...+... +..|..++|.|.+ 
T Consensus       261 k~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~-  339 (1281)
T KOG4222|consen  261 KDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCET-  339 (1281)
T ss_pred             ccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeec-
Confidence                        11114788888999999999999999999999999999999999999988877 9999999999999 


Q ss_pred             cCCCCceEEEEECCE
Q psy14540        265 SGDLPLSLQWYKNGL  279 (291)
Q Consensus       265 ~~~p~~~v~W~~~~~  279 (291)
                      .+.|+|.+.|.+.|.
T Consensus       340 ~gnP~PavfW~keg~  354 (1281)
T KOG4222|consen  340 LGNPPPAVFWLKEGS  354 (1281)
T ss_pred             CCCCCcceEEeccCc
Confidence            899999999999875

>KOG4194|consensus

Probab=99.96  E-value=1.4e-28  Score=192.99  Aligned_cols=232  Identities=22%  Similarity=0.367  Sum_probs=180.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC--CCCCeeEEEECCeecCCC----eeEeceEE-----eeccceEEEEEEeecC
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLAGD----RFVMGQYM-----SLHGDVISHVNISSVR   70 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~l~i~~~~   70 (291)
                      +|+|..+|.......|++++|+|.+.+  ..+..+.|.++.+.....    ........     .......+.|.+.|++
T Consensus       503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt  582 (873)
T KOG4194|consen  503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT  582 (873)
T ss_pred             CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence            689999999999999999999999986  556789999987644311    11110000     1112234779999999


Q ss_pred             CCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEe-c
Q psy14540         71 VEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP-I  148 (291)
Q Consensus        71 ~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~-~  148 (291)
                      ..|+|.|+|.++|..|. .+..++++|...|.+       ...|....+..|+...|.|.+ .|.|.|.+.|.++|.. .
T Consensus       583 ~td~grYQCVvtN~FGStysqk~KltV~~~PsF-------tktP~dltl~tg~mArl~CaA-tG~P~PeIawqkdggtdF  654 (873)
T KOG4194|consen  583 FTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSF-------TKTPEDLTLRTGQMARLECAA-TGHPRPEIAWQKDGGTDF  654 (873)
T ss_pred             cccCceEEEEEecccCcchhheeEEEeeccCcc-------ccCcccceeecccceeeeeec-cCCCCcceeehhcCCCCC
Confidence            99999999999998886 677889999887744       355677889999999999999 7999999999998766 3


Q ss_pred             cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540        149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS  228 (291)
Q Consensus       149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  228 (291)
                      +.......                                        .+-..+..+.|.++..+|.|.|+|.|.|.+|.
T Consensus       655 PAA~eRRl----------------------------------------~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~  694 (873)
T KOG4194|consen  655 PAARERRL----------------------------------------HVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ  694 (873)
T ss_pred             chhhhhee----------------------------------------eecCCCCEEEEecccccccceeEEeeeccccc
Confidence            32211110                                        01111335778889999999999999999999


Q ss_pred             CCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEECCEEcc
Q psy14540        229 DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYKNGLAIS  282 (291)
Q Consensus       229 ~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~  282 (291)
                      .++...|.|...|.+..+.... +..|+.+.|.|.+ .+.|+ |.+.|+|++++|.
T Consensus       695 isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a-~~~~a~pr~~W~k~d~pil  749 (873)
T KOG4194|consen  695 ISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLA-EGAPADPRLEWFKEDKPIL  749 (873)
T ss_pred             eeeceEEEEecCCcccccccceEEEecceEEEEEec-CCCCCCccccccCCCCceE
Confidence            9999999999998888776666 9999999999999 66666 9999999998873

>KOG4221|consensus

Probab=99.96  E-value=9.5e-28  Score=200.82  Aligned_cols=230  Identities=29%  Similarity=0.480  Sum_probs=180.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .+.|...+.+.++..|+++.|.|.+.+.+.+.+.|.++..++..+ +...     ..+   ..|.|.+++..|.|.|+|.
T Consensus       140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~-----lps---G~L~I~~~qp~d~g~yrc~  211 (1381)
T KOG4221|consen  140 LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIV-----LPS---GALEISGLQPSDTGEYRCV  211 (1381)
T ss_pred             cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEE-----cCC---CcEEecccccCCCceEEEE
Confidence            356777888899999999999999999888899999999877733 2222     111   3388999999999999999


Q ss_pred             EeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540         81 ATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        81 ~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      +.+.... .+....|+|...+....... ....+....+.+|+.+.|.|.+ .+.|.|.|.|.+|+..+..+. ..+.  
T Consensus       212 vt~g~~~r~S~~a~ltv~s~~~~~~~~~-fl~~p~~~~v~~g~~v~leCvv-s~~p~p~v~Wlrng~~i~~ds-~riv--  286 (1381)
T KOG4221|consen  212 VTGGASQRTSNEAELTVLSDPGALNKLV-FLDEPSNAVVVEGDDVVLECVV-SGVPKPSVKWLRNGEKISVDS-YRIV--  286 (1381)
T ss_pred             EecCCcCCccceeEEEecCCccccccee-eecCCCccccccCCcEEEEEEe-cCCCCCceEEeeCCeeeeecc-eEEE--
Confidence            9865432 35566777774443322222 3456677888999999999999 899999999999998875543 1111  


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV  239 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~  239 (291)
                              +                               .....|.|.+++.+|+|.|+|+|.|......+..+|.|..
T Consensus       287 --------l-------------------------------~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a  327 (1381)
T KOG4221|consen  287 --------L-------------------------------VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA  327 (1381)
T ss_pred             --------E-------------------------------ecccceEEeccccccCceEEEEecCCCcccccceEEEEEc
Confidence                    0                               1145688889999999999999999777777888899999


Q ss_pred             CCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        240 PPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       240 ~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      +|.|...+... +.++..+.|.|.+ .|.|.+.+.|+|||..+-..
T Consensus       328 ~P~~~~~p~~l~A~e~~die~ec~~-~g~p~p~v~w~kNgd~~ips  372 (1381)
T KOG4221|consen  328 PPGFTKAPTTLVAHESMDIEFECPV-SGKPIPTVRWYKNGDRIIPS  372 (1381)
T ss_pred             CCCCCCCCcceeeeeccceeEeCCC-CCCCcceEEEEecCcccCcc
Confidence            99999888877 8899999999999 88899999999998876433

>KOG4221|consensus

Probab=99.95  E-value=7.2e-26  Score=189.76  Aligned_cols=254  Identities=25%  Similarity=0.373  Sum_probs=192.8

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      |...|...++.+|+++.|.|.+.+.|.+.|.|.+|+..+..+.+.+.      -.+...|.|.+++..|+|.|+|.+.+.
T Consensus       240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~riv------l~g~~slliS~a~~~dSg~YtC~Atn~  313 (1381)
T KOG4221|consen  240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIV------LVGGSSLLISNATDDDSGKYTCRATNT  313 (1381)
T ss_pred             eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEE------EecccceEEeccccccCceEEEEecCC
Confidence            56778888999999999999999999999999999998884333221      122355899999999999999999987


Q ss_pred             CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceE
Q psy14540         85 VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS  164 (291)
Q Consensus        85 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      .........++|+.+|..+       ..+......++..+.|.|.+ .|.|.+.+.|+|||..+.....+.+....    
T Consensus       314 ~D~idasaev~V~a~P~~~-------~~p~~l~A~e~~die~ec~~-~g~p~p~v~w~kNgd~~ipsdy~ki~~~~----  381 (1381)
T KOG4221|consen  314 NDSIDASAEVTVLAPPGFT-------KAPTTLVAHESMDIEFECPV-SGKPIPTVRWYKNGDRIIPSDYFKIVGGG----  381 (1381)
T ss_pred             CcccccceEEEEEcCCCCC-------CCCcceeeeeccceeEeCCC-CCCCcceEEEEecCcccCcccceEecCCC----
Confidence            7777788889999887544       44555677789999999999 78899999999999988776666655332    


Q ss_pred             EEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec--------------------------------------------
Q psy14540        165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE--------------------------------------------  200 (291)
Q Consensus       165 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~--------------------------------------------  200 (291)
                      .+.|..+...|.|.|.|.++|..|.......+.+..                                            
T Consensus       382 ~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~  461 (1381)
T KOG4221|consen  382 NLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTY  461 (1381)
T ss_pred             CcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceE
Confidence            288888999999999999999999877666553100                                            


Q ss_pred             ------------------cceEEEEeeeecCCCeeEEE--EeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEE
Q psy14540        201 ------------------YTSSLSIATLSTGHSGNYTC--VASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVA  260 (291)
Q Consensus       201 ------------------~~~~l~i~~~~~~~~g~y~C--~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~  260 (291)
                                        ... +.+........+.|.|  .|.|..|....+..|.|..+|.   .+.. ...+..--++
T Consensus       462 ~v~~~~~~~~rer~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE---gp~~-~~a~ats~~t  536 (1381)
T KOG4221|consen  462 TVFYKVEGDVRERLQNTSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE---GPVQ-LQAYATSPTT  536 (1381)
T ss_pred             EEEEecCCchhhhheeccCCc-eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCC---CCcc-ccccccCcce
Confidence                              011 4444455556666655  5567778877888888888777   2222 5556666788


Q ss_pred             EEeecCCCCc----eEEEEECCEEcc
Q psy14540        261 CVVQSGDLPL----SLQWYKNGLAIS  282 (291)
Q Consensus       261 C~~~~~~p~~----~v~W~~~~~~l~  282 (291)
                      |.+ .+.|++    .|+|||......
T Consensus       537 i~v-~WepP~~~n~~I~~yk~~ys~~  561 (1381)
T KOG4221|consen  537 ILV-TWEPPPFGNGPITGYKLFYSED  561 (1381)
T ss_pred             EEE-EecCCCCCCCCceEEEEEEEcC
Confidence            999 777776    899998655443

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.95  E-value=2.2e-25  Score=172.59  Aligned_cols=212  Identities=21%  Similarity=0.316  Sum_probs=138.4

Q ss_pred             eeeecCCcEEEEEEe-----cCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540         12 QTLQPGPPVSLKCIA-----TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      ..+.+|+.+.|.|.+     .+.|.+.+.|+|+|....  +...    ...+   ..|.|.+++.+|+|.|+|.+.|..+
T Consensus        36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--~~~~----~~~g---~~l~i~~~~~~DsG~Y~C~a~N~~g  106 (326)
T PHA02785         36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND--RIIP----IDNG---SNMLILNPTQSDSGIYICITKNETY  106 (326)
T ss_pred             hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc--eEEE----ccCC---ceEEEcccCcccCeEEEEEEECCCc
Confidence            346789999999996     567888999999875322  1110    0111   2477999999999999999999888


Q ss_pred             ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEe----eCCCCCceeEEeECCEeccCCCceEEeccCCc
Q psy14540         87 SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV----TKGDPPLTISWLKNGLPILSDAEITIRSSGEY  162 (291)
Q Consensus        87 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  162 (291)
                      ....++.|+|.......  ..   .......+.+|..+.|.|..    ..+.|.+.+.|++++. + ...+....     
T Consensus       107 ~~~~s~~L~V~~~~~~~--~~---~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~-----  174 (326)
T PHA02785        107 CDMMSLNLTIVSVSESN--ID---LISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR-----  174 (326)
T ss_pred             ceEEEEEEEEEecCCCc--cc---eeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec-----
Confidence            77788888887643210  00   11223456689999999972    1357889999987542 1 11111110     


Q ss_pred             eEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC----ceeEEEEe
Q psy14540        163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN----HSSNLRVN  238 (291)
Q Consensus       163 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~----~~~~l~v~  238 (291)
                                                            ..+.|.|.++..+|+|.|+|.+.|..+...    ..+.|.|.
T Consensus       175 --------------------------------------~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~  216 (326)
T PHA02785        175 --------------------------------------TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR  216 (326)
T ss_pred             --------------------------------------CCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence                                                  023466666777777777777776654332    23344443


Q ss_pred             ---cCCCCCCCCcccccCCceEEEEEEeecCCCC---ceEEEEECCEEccC
Q psy14540        239 ---VPPHIGPFTFGELMEGVRTQVACVVQSGDLP---LSLQWYKNGLAISQ  283 (291)
Q Consensus       239 ---~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~---~~v~W~~~~~~l~~  283 (291)
                         .+|.+..+....+..|+.++|.|.+ .|.|+   +.|.|++||+.|++
T Consensus       217 ~~~~pp~~~~p~~~~~~~G~~v~L~C~a-~g~P~~~~~~v~W~kng~~i~~  266 (326)
T PHA02785        217 DRIIPPTMQLPEGVVTSIGSNLTIACRV-SLRPPTTDADVFWISNGMYYEE  266 (326)
T ss_pred             ccCCCceecCCCcEEecCCCcEEEEEEE-ECCCCCCCceEEEEECCEECCC
Confidence               2444433333337789999999999 66665   58999999998854

>KOG4222|consensus

Probab=99.92  E-value=1.6e-24  Score=180.82  Aligned_cols=268  Identities=28%  Similarity=0.474  Sum_probs=200.5

Q ss_pred             cceeecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      .|-+.|.+..+..|+.+.|.|.-. +.|.+.+.|.|+|+.+.......   ......  ..|.|.+++..|+|.|.|.+.
T Consensus       133 dfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~---~~lisg--G~LlIsnvrksD~GtY~CVat  207 (1281)
T KOG4222|consen  133 DFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPI---IALISG--GNLLISNVRKSDEGTYACVAT  207 (1281)
T ss_pred             hcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccccee---EEEecC--CcEEEeccccCCCceeeeeec
Confidence            455677788889999999999865 47889999999999877111111   111111  238899999999999999999


Q ss_pred             CCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCC
Q psy14540         83 NRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE  161 (291)
Q Consensus        83 ~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~  161 (291)
                      |..|. .+...++.|++.|.+-       ..+....+..|..+.+.|.+ .|.|.+.+.|.+++..++... +.+..+  
T Consensus       208 NmvG~ReS~~A~lsv~e~P~f~-------~rp~~~~v~~g~~~~f~c~v-~GdP~P~Vrwkk~~~~~P~~r-y~i~~d--  276 (1281)
T KOG4222|consen  208 NMVGERESIPARLSVQEKPWFW-------KRPKDLAVLVGAAAEFDCRV-GGDPQPTVRWKKDDPSLPRSR-YSILDD--  276 (1281)
T ss_pred             ccccccccccceeeeccCCccc-------cccccceeeccccccccccc-CCCCCCceeeeccCCCCCccc-eeeeec--
Confidence            98886 4566788999887543       44456778889999999999 899999999999887775443 332221  


Q ss_pred             ceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEecc----------------------------------------
Q psy14540        162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY----------------------------------------  201 (291)
Q Consensus       162 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~----------------------------------------  201 (291)
                       ..+|.+..+...|.|.|.|.++|..|.......+.+...                                        
T Consensus       277 -~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q  355 (1281)
T KOG4222|consen  277 -TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQ  355 (1281)
T ss_pred             -cccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcc
Confidence             356889999999999999999999998776665551111                                        


Q ss_pred             -------------------ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe------cC-CCCCCCCccc-ccCC
Q psy14540        202 -------------------TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN------VP-PHIGPFTFGE-LMEG  254 (291)
Q Consensus       202 -------------------~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~------~~-p~~~~~~~~~-~~~g  254 (291)
                                         ...|.|.++...|.|.|.|...+..+.......+.+.      .| |.|...+... ..++
T Consensus       356 ~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~  435 (1281)
T KOG4222|consen  356 DLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVG  435 (1281)
T ss_pred             eecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccC
Confidence                               5689999999999999999988777554433333322      23 3343333333 7779


Q ss_pred             ceEEEEEEeecCCCCceEEEEECCEEccCCeeeEe
Q psy14540        255 VRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT  289 (291)
Q Consensus       255 ~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~  289 (291)
                      ..+.|.|.+ .+.|.+.+.|+++|-.+...+.+++
T Consensus       436 s~a~l~c~a-tg~P~p~i~wl~dg~~v~~~d~~~s  469 (1281)
T KOG4222|consen  436 STASLPCSA-TGAPTPNISWLKDGCNVMNPDSRIS  469 (1281)
T ss_pred             cccccChhh-hCCCCCCchhhhcccccccCCcccc
Confidence            999999999 9999999999999988876665443

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.90  E-value=3.6e-22  Score=145.41  Aligned_cols=163  Identities=23%  Similarity=0.365  Sum_probs=112.4

Q ss_pred             cceeeeecCCcEEEEEEecCC-----------CCCeeEEEECCeecC----CCeeEeceEE-eeccceEEEEEEeecCCC
Q psy14540          9 FIQQTLQPGPPVSLKCIATGN-----------PTPHISWKLDGYPLA----GDRFVMGQYM-SLHGDVISHVNISSVRVE   72 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~-----------~~~~v~W~~~~~~~~----~~~~~~~~~~-~~~~~~~~~l~i~~~~~~   72 (291)
                      ..+..+.+|+++.|.|.+.+.           ...++.|+|++...-    +.+....... ...+.....|.|.+++.+
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~  108 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI  108 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence            345678999999999997653           345899999875421    1110000000 000111246999999999


Q ss_pred             CCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC----CCCceeEEeECCEec
Q psy14540         73 DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG----DPPLTISWLKNGLPI  148 (291)
Q Consensus        73 d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~  148 (291)
                      |+|.|+|.+.+..+.....+.|.|...+             ....+.+|+.+.|.|.+..+    .|.|+++|+|++.++
T Consensus       109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~~-------------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l  175 (227)
T PHA02826        109 DEGIYICTISSGNICEESTIRLTFDSGT-------------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIV  175 (227)
T ss_pred             HCEEEEEEEEECCcceEEEEEEEEecCC-------------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEEC
Confidence            9999999999988777777777774321             12456789999999997443    467899999999998


Q ss_pred             cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      ....+......   ...|.|.++..+|+|.|+|.+....
T Consensus       176 ~~~~r~~~~~~---~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        176 LYTDRIQLRNN---NSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             CCCCCEEEeCC---CCEEEECcCCHHhCEEEEEEEEEeE
Confidence            76655443321   3468888888888888888877654

>KOG4194|consensus

Probab=99.89  E-value=9.3e-22  Score=155.05  Aligned_cols=176  Identities=30%  Similarity=0.495  Sum_probs=131.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCee-cCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .|.|+..|.+.++..|+...|.|.++|.|.|+|.|.|+|.. .+..+.. .-+....++   .+.|.|++.+|+|.|+|.
T Consensus       612 ~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eR-Rl~Vmpedd---~f~Itnvk~eD~GiYtC~  687 (873)
T KOG4194|consen  612 APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARER-RLHVMPEDD---VFFITNVKIEDQGIYTCT  687 (873)
T ss_pred             cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhh-eeeecCCCC---EEEEecccccccceeEEe
Confidence            69999999999999999999999999999999999997764 4311110 011111222   256999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceEEecc
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      +.+..|..+....+.|.+.|.+.       .+.+...+..|+.+.|.|.+ .+.|+ |.+.|+|+++++.-..+....  
T Consensus       688 A~n~AG~isanAtL~V~e~p~f~-------~PL~~~~V~~get~vlqC~a-~~~~a~pr~~W~k~d~pil~t~rh~f~--  757 (873)
T KOG4194|consen  688 AQNVAGQISANATLTVLETPSFS-------IPLEDQLVVVGETLVLQCLA-EGAPADPRLEWFKEDKPILITERHTFP--  757 (873)
T ss_pred             eeccccceeeceEEEEecCCccc-------ccccceEEEecceEEEEEec-CCCCCCccccccCCCCceEEeecccCC--
Confidence            99999999999999999987443       22345678899999999999 56665 999999999887655443322  


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                       ++..-+.+......|.|.|+|.+.+..+....
T Consensus       758 -d~dQllvv~~~~~~daG~yTcem~~~~~~~~~  789 (873)
T KOG4194|consen  758 -DGDQLLVVKENLVEDAGIYTCEMSNTLGTERI  789 (873)
T ss_pred             -CCCeEEEEEehhhhhcceEEEEEEeeccceee
Confidence             23445666666677777777766666554433

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.82  E-value=2.3e-18  Score=133.65  Aligned_cols=128  Identities=21%  Similarity=0.341  Sum_probs=86.9

Q ss_pred             ecceeeeecCCcEEEEEEe-----cCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          8 KFIQQTLQPGPPVSLKCIA-----TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      .+.+..+.+|..+.|.|..     .+.+.+.++|+++.. +...++..     .   ....|.|.+++.+|+|.|+|.+.
T Consensus       127 ~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~r~~~-----~---~~~~L~i~~v~~~d~G~Y~C~~~  197 (326)
T PHA02785        127 ISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNKRLKQ-----R---TPGIITIEDVRKNDAGYYTCVLK  197 (326)
T ss_pred             eeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCcceEe-----c---CCCeEEEeecChhhCeEEEEEEE
Confidence            3444567899999999972     346788999988642 33222211     1   11359999999999999999999


Q ss_pred             CCCCcee----eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC---ceeEEeECCEeccC
Q psy14540         83 NRVGSQT----HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP---LTISWLKNGLPILS  150 (291)
Q Consensus        83 ~~~~~~~----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~  150 (291)
                      +..+...    ..+.|.|.....+|    . ...+....+..|+.++|.|.+ .+.|.   +.+.|++||..+..
T Consensus       198 n~~g~~~~~~t~~v~l~V~~~~~pp----~-~~~p~~~~~~~G~~v~L~C~a-~g~P~~~~~~v~W~kng~~i~~  266 (326)
T PHA02785        198 YIYGDKTYNVTRIVKLEVRDRIIPP----T-MQLPEGVVTSIGSNLTIACRV-SLRPPTTDADVFWISNGMYYEE  266 (326)
T ss_pred             eccCCEEEeEEEEEEEEEeccCCCc----e-ecCCCcEEecCCCcEEEEEEE-ECCCCCCCceEEEEECCEECCC
Confidence            8766543    23345554322111    1 122355677789999999999 46554   48999999998754

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.82  E-value=6.4e-19  Score=111.85  Aligned_cols=96  Identities=24%  Similarity=0.404  Sum_probs=82.9

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      |.|+..|....+..|+.+.|.|.+.|.|.+.+.|+|++..+. ..++..     ......+.|.|.+++..|+|.|+|.+
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~-----~~~~~~s~L~I~~~~~~D~G~Ytc~a   75 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKI-----ENTENSSKLTITEGQQEHCGCYTLEV   75 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEE-----EecCCeeEEEECCCChhhCEEEEEEE
Confidence            788999999999999999999999999999999999999887 333322     22234477999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEcCCCCC
Q psy14540         82 TNRVGSQTHSADMRVYDAPGQP  103 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~  103 (291)
                      .|..|.....+.|.|.+.|.+|
T Consensus        76 ~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          76 ENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             EcCCCceeEEEEEEEecCCCCC
Confidence            9999999999999999988654

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.75  E-value=2.8e-17  Score=102.35  Aligned_cols=87  Identities=31%  Similarity=0.529  Sum_probs=73.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+.... ..    ...   ...|.|.+++.+|+|.|+|.+
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~-~~----~~~---~~~L~I~~v~~~D~G~Y~C~A   72 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA-EI----SMS---GAVLKIFNIQPEDEGTYECEA   72 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC-EE----ecC---CCEEEECcCChhhCEEEEEEE
Confidence            7999999999999999999999999999999999999987765321 11    111   135899999999999999999


Q ss_pred             eCCCCceeeeeeEEE
Q psy14540         82 TNRVGSQTHSADMRV   96 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v   96 (291)
                      .|..|.....+.|.|
T Consensus        73 ~N~~G~~~~~~~l~V   87 (88)
T cd05851          73 ENIKGKDKHQARVYV   87 (88)
T ss_pred             EcCCCceEEEEEEEE
Confidence            999999888887776

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.72  E-value=1.9e-16  Score=99.86  Aligned_cols=88  Identities=23%  Similarity=0.425  Sum_probs=73.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|+..|....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++..     ......++|.|.+++.+|+|.|+|.
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~-----~~~~~~~~L~i~~~~~~D~G~Y~C~   77 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQI-----TSTEYKSTFEISKVQMSDEGNYTVV   77 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEE-----EEcCCeeEEEECCCCcccCEeEEEE
Confidence            78999999999999999999999999999999999999988763 33222     1223346799999999999999999


Q ss_pred             EeCCCCceeeeeeE
Q psy14540         81 ATNRVGSQTHSADM   94 (291)
Q Consensus        81 ~~~~~~~~~~~~~l   94 (291)
                      +.|..|.....+.|
T Consensus        78 a~N~~G~~~~~~~l   91 (92)
T cd05747          78 VENSEGKQEAQFTL   91 (92)
T ss_pred             EEcCCCCEeEEEEe
Confidence            99999987776654

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.69  E-value=6.3e-16  Score=98.48  Aligned_cols=95  Identities=24%  Similarity=0.521  Sum_probs=72.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeE-eceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFV-MGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...+....+..|+.++|.|.+.+.|.|.++|++++..+...... ............+.|.|.+++.+|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            588887777766667899999999999999999999988766522111 1111112223346799999999999999999


Q ss_pred             EeCCCCceeeeeeEEE
Q psy14540         81 ATNRVGSQTHSADMRV   96 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v   96 (291)
                      +.|..|.....+.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999888877764

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.69  E-value=2.3e-16  Score=99.53  Aligned_cols=89  Identities=34%  Similarity=0.638  Sum_probs=76.0

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      |.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.. .++...     .....++|.|.+++.+|+|.|+|.+
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~   75 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIE-----SDGGSSSLTIKNVTREDAGTYTCVA   75 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEE-----EETTEEEEEESSESGGGSEEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeee-----cccceeEEccCCCChhhCEEEEEEE
Confidence            7899999999999999999999999988999999999998873 333332     2226688999999999999999999


Q ss_pred             eCCCCceeeeeeEEE
Q psy14540         82 TNRVGSQTHSADMRV   96 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v   96 (291)
                      .+..|.....+.|.|
T Consensus        76 ~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   76 SNSSGEATASVNLTV   90 (90)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEC
Confidence            999888888877765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.69  E-value=9.4e-16  Score=97.38  Aligned_cols=88  Identities=18%  Similarity=0.291  Sum_probs=68.9

Q ss_pred             ceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEe-eccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540         10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMS-LHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      ..+.+.+|+++.|.|.+.+ .|.|.+.|+|+|..+............ ......++|.|.+++.+|+|.|+|.+.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            3568999999999999999 899999999999988733221111110 01123477999999999999999999999999


Q ss_pred             eeeeeeEEEE
Q psy14540         88 QTHSADMRVY   97 (291)
Q Consensus        88 ~~~~~~l~v~   97 (291)
                      .+..+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            8888888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.69  E-value=1.2e-15  Score=95.01  Aligned_cols=85  Identities=24%  Similarity=0.486  Sum_probs=68.3

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM   94 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l   94 (291)
                      |+.++|.|.+.+.|.+.+.|++++..+...  ++..... .......+.|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~-~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTK-EVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEe-cCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            789999999999999999999999887632  3322111 1122345789999999999999999999999999999999


Q ss_pred             EEEcCCCC
Q psy14540         95 RVYDAPGQ  102 (291)
Q Consensus        95 ~v~~~~~~  102 (291)
                      .|...|..
T Consensus        80 ~V~~~P~~   87 (88)
T cd05735          80 TVQEPPDP   87 (88)
T ss_pred             EEeCCCCC
Confidence            99987644

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.68  E-value=8.7e-16  Score=97.99  Aligned_cols=94  Identities=26%  Similarity=0.519  Sum_probs=71.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|. .+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+... ...............+.|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            68875 466788999999999999999999999999988665422 1111111122233457899999999999999999


Q ss_pred             EeCCCCceeeeeeEEE
Q psy14540         81 ATNRVGSQTHSADMRV   96 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v   96 (291)
                      +.|..|....++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999998887776654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.67  E-value=1.8e-15  Score=96.60  Aligned_cols=94  Identities=28%  Similarity=0.530  Sum_probs=68.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +|.|. .+.+.++.+|++++|.|.+.+.|.+.+.|+++  +..+... .....+...........|.|.+++.+|+|.|+
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            57765 47788999999999999999999999999994  3333211 00000111111223467999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEE
Q psy14540         79 CTATNRVGSQTHSADMRV   96 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v   96 (291)
                      |.+.|..|.....+.|.|
T Consensus        81 C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          81 CEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeccCCcceeEEEEeC
Confidence            999999998887777653

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.67  E-value=2.4e-15  Score=93.08  Aligned_cols=81  Identities=25%  Similarity=0.395  Sum_probs=66.7

Q ss_pred             eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ   88 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   88 (291)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|++++..+...  ++..     ......+.|.|.+++.+|+|.|+|.+.|..|..
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~-----~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   78 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRV-----ESYKDLSSFVIEGAEREDEGVYTITVTNPVGED   78 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEE-----EEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence            467899999999999999999999999999988632  3322     222335779999999999999999999999998


Q ss_pred             eeeeeEEE
Q psy14540         89 THSADMRV   96 (291)
Q Consensus        89 ~~~~~l~v   96 (291)
                      ...+.|.|
T Consensus        79 ~~~~~l~V   86 (86)
T cd05894          79 HASLFVKV   86 (86)
T ss_pred             EEEEEEEC
Confidence            88777654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.66  E-value=2.2e-15  Score=94.95  Aligned_cols=84  Identities=27%  Similarity=0.480  Sum_probs=66.8

Q ss_pred             cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      |...++.+|+++.|.|.+.+.|.|.+.|++++..+. ..++...    ......++|.|.+++.+|+|.|+|.+.|..|.
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   83 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVK----VEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG   83 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEE----EcCCCEEEEEEccCChhhCEEEEEEEEECCCc
Confidence            455789999999999999999999999999999886 3332221    11123467999999999999999999999998


Q ss_pred             eeeeeeEEE
Q psy14540         88 QTHSADMRV   96 (291)
Q Consensus        88 ~~~~~~l~v   96 (291)
                      ....+.+.|
T Consensus        84 ~~~~~~v~v   92 (92)
T cd05737          84 ETVDVTVSV   92 (92)
T ss_pred             ceEEEEEeC
Confidence            877776653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.66  E-value=2.6e-15  Score=95.31  Aligned_cols=89  Identities=29%  Similarity=0.453  Sum_probs=66.5

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+....+..|+.+.|.|.+ .|.|.+.+.|++++..+....+..+....                               
T Consensus         6 ~p~~~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~~~~~~~~~~-------------------------------   53 (98)
T cd05762           6 FPEDMKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEGEGIKIENTE-------------------------------   53 (98)
T ss_pred             CCcCEEEECCCEEEEEEEE-cccCCCceEEEECCEEecCCCcEEEEecC-------------------------------
Confidence            3455788999999999999 79999999999999988655443322111                               


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                               ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|...|
T Consensus        54 ---------~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P   94 (98)
T cd05762          54 ---------NSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP   94 (98)
T ss_pred             ---------CeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence                     13456777777777777888888888887778888877655

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.65  E-value=2.3e-15  Score=95.74  Aligned_cols=90  Identities=28%  Similarity=0.555  Sum_probs=72.2

Q ss_pred             CCcceeec--ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKF--IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~--~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      ||.|...+  ....+..|+.+.|.|.+.+.|.+.+.|+++|..+...  ++..       ....+.|.|.+++.+|+|.|
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~-------~~~~~~L~I~~v~~~D~G~Y   73 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF-------NEDGSEMTILDVDKLDEAEY   73 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE-------eCCCCEEEECCCChhhCEEE
Confidence            67776655  3447899999999999999999999999999987633  2211       11224599999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEEEc
Q psy14540         78 QCTATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~   98 (291)
                      +|.+.|..|.....+.|.|..
T Consensus        74 ~C~a~N~~G~~~~~~~L~V~~   94 (95)
T cd05730          74 TCIAENKAGEQEAEIHLKVFA   94 (95)
T ss_pred             EEEEEcCCCeEEEEEEEEEEe
Confidence            999999999988888888864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.65  E-value=3.7e-15  Score=93.91  Aligned_cols=88  Identities=23%  Similarity=0.433  Sum_probs=68.4

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCC-CeeEEEE-CCeecCC-C-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKL-DGYPLAG-D-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +.+.|....+..|++++|.|.+.+.|. +.+.|++ ++..+.. . ++..    ...+...++|.|.+++.+|+|.|+|.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v----~~~~~~~~~L~I~~v~~~D~G~YtC~   78 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISV----VRNDDYSSTLTIYNANIDDAGIYKCV   78 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEE----EeCCCCceEEEEeccChhhCEEEEEE
Confidence            456788888999999999999999884 7999998 7765542 2 2211    12233457899999999999999999


Q ss_pred             EeCCC-CceeeeeeEEE
Q psy14540         81 ATNRV-GSQTHSADMRV   96 (291)
Q Consensus        81 ~~~~~-~~~~~~~~l~v   96 (291)
                      +.|.. |....++.|.|
T Consensus        79 A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          79 VSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEcCCCCcEEEEEEEEE
Confidence            99986 77888877766

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.65  E-value=6e-15  Score=107.80  Aligned_cols=77  Identities=21%  Similarity=0.342  Sum_probs=59.8

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecC----CCCceEEEEEC
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSG----DLPLSLQWYKN  277 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~----~p~~~v~W~~~  277 (291)
                      ...|.|.++..+|+|.|+|.|.|..+.....+.|.|..++     ....+.+|+.+.|+|.+..+    .|.|+|+|+||
T Consensus        97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKn  171 (227)
T PHA02826         97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT-----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKN  171 (227)
T ss_pred             CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC-----ccceEecCCCEEEEeeCCCCccccCCCceEEEEEC
Confidence            4578899999999999999999977776777777774332     11236789999999998433    45789999999


Q ss_pred             CEEccC
Q psy14540        278 GLAISQ  283 (291)
Q Consensus       278 ~~~l~~  283 (291)
                      |++|..
T Consensus       172 g~~l~~  177 (227)
T PHA02826        172 GNIVLY  177 (227)
T ss_pred             CEECCC
Confidence            999863

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.64  E-value=3.8e-15  Score=93.86  Aligned_cols=83  Identities=24%  Similarity=0.437  Sum_probs=59.5

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.+.|.|.+ .|.|.|.+.|++++.++....+..+.........|.|.++..+|+|.|+|.+.|..|....
T Consensus         8 p~~v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV   86 (92)
T ss_pred             CceEEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence            345788899999999999 7999999999999998876655544433222345677777777777777777766666555


Q ss_pred             ceEE
Q psy14540        193 SSNL  196 (291)
Q Consensus       193 ~~~~  196 (291)
                      .+.+
T Consensus        87 ~~~v   90 (92)
T cd05737          87 DVTV   90 (92)
T ss_pred             EEEE
Confidence            5443

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.64  E-value=5.9e-15  Score=92.62  Aligned_cols=88  Identities=23%  Similarity=0.366  Sum_probs=69.5

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      ++..|.+..+.+|+.+.|.|.+.+.|.|.+.|++++..+......    ..........|.|.+++..|.|.|+|.+.|.
T Consensus         3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~----~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~   78 (90)
T cd04972           3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTD----TLETTVDIYNLQLSNITSETQTTVTCTAENP   78 (90)
T ss_pred             cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccE----EEEecCCEEEEEEecCCcccCEEEEEEEECC
Confidence            445666777999999999999999999999999999877632211    1111233467999999999999999999999


Q ss_pred             CCceeeeeeEEE
Q psy14540         85 VGSQTHSADMRV   96 (291)
Q Consensus        85 ~~~~~~~~~l~v   96 (291)
                      .|.....+.|.|
T Consensus        79 ~G~~~~~~~L~v   90 (90)
T cd04972          79 VGQANVSVQVTV   90 (90)
T ss_pred             CCceeEEEEEeC
Confidence            998888777654

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.64  E-value=3.1e-15  Score=93.61  Aligned_cols=87  Identities=26%  Similarity=0.459  Sum_probs=71.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ||.+...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......        .....|.|.+++.+|+|.|+|.+
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~a   72 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--------MSGAVLKIPNIQFEDEGTYECEA   72 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--------EeCCEEEECCCCcccCEEEEEEE
Confidence            5777888888999999999999999999999999999877554221110        11246999999999999999999


Q ss_pred             eCCCCceeeeeeEEE
Q psy14540         82 TNRVGSQTHSADMRV   96 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v   96 (291)
                      .|..|.......|.|
T Consensus        73 ~N~~G~~~~~~~l~V   87 (88)
T cd04968          73 ENIKGKDTHQGRIYV   87 (88)
T ss_pred             EECCCcEEEEEEEEE
Confidence            999999888887776

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.64  E-value=4.2e-15  Score=95.84  Aligned_cols=95  Identities=27%  Similarity=0.540  Sum_probs=68.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEe-ceEEeeccceEEEEEE--eecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVM-GQYMSLHGDVISHVNI--SSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i--~~~~~~d~G~y~   78 (291)
                      ||.|...|....+.+|+.+.|.|.+.+.|.+.+.|+|+|..+....... .............+.+  ..++.+|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            7999999999999999999999999999999999999998876411100 0111111122222333  334789999999


Q ss_pred             EEEeCCCCc-eeeeeeEEE
Q psy14540         79 CTATNRVGS-QTHSADMRV   96 (291)
Q Consensus        79 C~~~~~~~~-~~~~~~l~v   96 (291)
                      |.+.|..|. .+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999987 666666655

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.64  E-value=1.4e-14  Score=98.84  Aligned_cols=129  Identities=16%  Similarity=0.326  Sum_probs=83.4

Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEE
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISW  141 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W  141 (291)
                      +|+|.+++..|+|.|.|.+.+..+.....+.|.|..+|..     .. . +......+|+.+.|.|.+.+.+|. +.+.|
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v-----~~-~-~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W   74 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRV-----RL-S-LEKLVSMIEEPQTLICHIAGYYPLDVQVEW   74 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCce-----EE-e-CCCceeecCCcEEEEEEECCCCCCCeEEEE
Confidence            5899999999999999999987788888889999865522     11 1 122333378889999999655675 58999


Q ss_pred             eECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEE
Q psy14540        142 LKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV  221 (291)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~  221 (291)
                      ++++.......   ..     ........+..+..|.|..                    .+.|.+.....++...|+|.
T Consensus        75 ~~~g~~~~~~~---~~-----~~~~~~~~~~~~~dgt~~~--------------------~s~L~v~~~~~~~g~~ytC~  126 (139)
T cd05771          75 TREPPGDSPPP---VS-----LSNVSFSSHRQHQDGTYSL--------------------SSHLTLEPGTEDAGATYTCR  126 (139)
T ss_pred             EECCCCCccce---ec-----cCCeEecceEeCCCCCEEE--------------------EEEEEecCCccCCCCEEEEE
Confidence            99886422100   00     0001111223344455554                    24566666566677788888


Q ss_pred             eeeCC
Q psy14540        222 ASNTV  226 (291)
Q Consensus       222 ~~~~~  226 (291)
                      +.+..
T Consensus       127 V~H~~  131 (139)
T cd05771         127 VSHVS  131 (139)
T ss_pred             EEcCC
Confidence            87765

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.64  E-value=3.2e-15  Score=92.64  Aligned_cols=84  Identities=31%  Similarity=0.607  Sum_probs=69.5

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      +|+..|.+..+..|+.+.|.|.+.+.|.+.+.|++++..+... ++..     ..    ..|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-----~~----~~L~i~~~~~~D~G~Y~C~a~   71 (85)
T cd05728           1 EWLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-----EA----GDLRITKLSLSDSGMYQCVAE   71 (85)
T ss_pred             CccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-----eC----CEEEEeeCCHHHCEEEEEEEE
Confidence            3567888899999999999999999999999999999988732 2221     11    258999999999999999999


Q ss_pred             CCCCceeeeeeEEE
Q psy14540         83 NRVGSQTHSADMRV   96 (291)
Q Consensus        83 ~~~~~~~~~~~l~v   96 (291)
                      |..|.....+.|.|
T Consensus        72 N~~G~~~~~~~l~V   85 (85)
T cd05728          72 NKHGTIYASAELAV   85 (85)
T ss_pred             CCCCeEEEEEEEEC
Confidence            99998887777654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.64  E-value=8.1e-15  Score=90.50  Aligned_cols=83  Identities=28%  Similarity=0.464  Sum_probs=61.9

Q ss_pred             CcEEEEEEecCCCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540         18 PPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR   95 (291)
Q Consensus        18 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~   95 (291)
                      ++++|.|.+.+.|.+  .+.|++++..+..................++|.|.+++..|+|.|+|.+.+..|.....+.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            478999999998766  589999998876221100000111112346799999999999999999999999999999999


Q ss_pred             EEcCC
Q psy14540         96 VYDAP  100 (291)
Q Consensus        96 v~~~~  100 (291)
                      |..+|
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98654

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.63  E-value=6.7e-15  Score=93.67  Aligned_cols=87  Identities=16%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEE--eeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYM--SLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ   88 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   88 (291)
                      ...+..|+.+.|.|.+.+.|.|.+.|+|+|.++...........  .......++|.|.+++.+|+|.|+|.+.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            46788999999999999999999999999999874322111100  0112234689999999999999999999999998


Q ss_pred             eeeeeEEEE
Q psy14540         89 THSADMRVY   97 (291)
Q Consensus        89 ~~~~~l~v~   97 (291)
                      +.++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            888888774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.62  E-value=5.9e-15  Score=93.73  Aligned_cols=39  Identities=21%  Similarity=0.399  Sum_probs=33.2

Q ss_pred             CcceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDA  152 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~  152 (291)
                      .....+.+|+.+.|.|.+ .| .|.|.+.|+|+|.++....
T Consensus        10 ~~~~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~~   49 (101)
T cd04975          10 NTTIFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNKL   49 (101)
T ss_pred             CceEEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCCc
Confidence            345788899999999999 57 8999999999999987543

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.61  E-value=8e-15  Score=87.81  Aligned_cols=73  Identities=29%  Similarity=0.435  Sum_probs=58.4

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      +.|.|.+.+.|.|.+.|+|++..+..  .++..    ...+.+..+|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~----~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISL----YQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEE----EEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            57999999999999999999998862  33222    112233457999999999999999999999999888877764

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.61  E-value=1.4e-14  Score=89.70  Aligned_cols=79  Identities=23%  Similarity=0.385  Sum_probs=54.4

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      .+.+.+|+.+.|.|.+ .|.|.|.+.|++++.++.... +..+... .....|.|..+...|+|.|+|.|.|..|....+
T Consensus         4 ~~~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   81 (86)
T cd05894           4 TIVVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTETEGRVRVESY-KDLSSFVIEGAEREDEGVYTITVTNPVGEDHAS   81 (86)
T ss_pred             EEEEEcCCEEEEEeeE-eecCCCeEEEEECCEECccCCCeEEEEEc-CCeEEEEECCCccCcCEEEEEEEEeCCCcEEEE
Confidence            4677899999999999 799999999999999886532 3333222 124456666666666666666666666654444


Q ss_pred             eE
Q psy14540        194 SN  195 (291)
Q Consensus       194 ~~  195 (291)
                      +.
T Consensus        82 ~~   83 (86)
T cd05894          82 LF   83 (86)
T ss_pred             EE
Confidence            33

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.60  E-value=3.2e-14  Score=92.25  Aligned_cols=98  Identities=22%  Similarity=0.337  Sum_probs=72.6

Q ss_pred             CCcceeecceeee-e---cCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecC-CCCC
Q psy14540          2 HPQLIYKFIQQTL-Q---PGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVR-VEDS   74 (291)
Q Consensus         2 ~p~~~~~~~~~~v-~---~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~   74 (291)
                      +|.|...|....+ .   .|..++|.|.+.+.|.+.+.|++++..+..  .++..... .......+.|+|.+++ .+|.
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~-~~~~~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTE-HTGTVHTSILTIINVSAALDY   82 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEee-ccCccceeEEEECcCCccCCC
Confidence            6777776653322 2   457899999999999999999999998862  22222111 1111223679999997 5899


Q ss_pred             eEEEEEEeCCCCceeeeeeEEEEcCC
Q psy14540         75 GIYQCTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      |.|+|.+.|..|.....+.|.+...|
T Consensus        83 G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          83 ALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             EEEEEEEEeCCccCcEEEEEEecCCC
Confidence            99999999999999999999988765

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.60  E-value=6.4e-15  Score=88.23  Aligned_cols=72  Identities=21%  Similarity=0.356  Sum_probs=51.6

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      +.|.|.+ .|.|.|.+.|+|++..+... .++.+...+.+...|.|..+..+|.|.|+|.|.|..|.......|
T Consensus         1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L   73 (75)
T cd05892           1 VKLECQI-SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARL   73 (75)
T ss_pred             CEEEEEE-EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEE
Confidence            5799999 79999999999999988643 344443333334467777777777777777777777766555444

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.60  E-value=7.3e-15  Score=88.55  Aligned_cols=73  Identities=40%  Similarity=0.679  Sum_probs=59.9

Q ss_pred             cCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540         16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM   94 (291)
Q Consensus        16 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l   94 (291)
                      +|+++.|.|.+.+.|.|.+.|+|++..+... +...     . .  ..+|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~-----~-~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   72 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV-----L-S--SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL   72 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEE-----c-c--CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence            6899999999999999999999999887632 2211     1 1  1369999999999999999999999998887777


Q ss_pred             EE
Q psy14540         95 RV   96 (291)
Q Consensus        95 ~v   96 (291)
                      .|
T Consensus        73 ~V   74 (74)
T cd05745          73 TV   74 (74)
T ss_pred             eC
Confidence            54

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>KOG3515|consensus

Probab=99.60  E-value=2.2e-14  Score=118.49  Aligned_cols=233  Identities=20%  Similarity=0.251  Sum_probs=144.4

Q ss_pred             CcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      |.....+.+..+..|++|.|.|.+.+ .|...++|++.++.+. .++..        ....+|.........-+.|.|++
T Consensus         8 pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~c~a   78 (741)
T KOG3515|consen    8 PVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYAT--------IADPTLVTTGDVRDTVAELNCRA   78 (741)
T ss_pred             ccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc-ccccc--------ccCCceeeecchhhhhhhhhhhh
Confidence            44444444457899999999999998 5577899999877655 11111        11133555566666678999999


Q ss_pred             eCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEE-EeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540         82 TNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQC-LVTKGDPPLTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        82 ~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C-~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      .+..+. ....+.+.+...+..       ...........+..+.+.| ....+.|.+.+.|+.++............. 
T Consensus        79 ~ns~~~~~~~~~~l~v~~~pa~-------~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~-  150 (741)
T KOG3515|consen   79 FNSVGMPSRCPMILDVDYPPAC-------LPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRV-  150 (741)
T ss_pred             cccccCceecceeeccccCccc-------cccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccc-
Confidence            876443 444555666554421       1112223445778899999 444578889999999875443221100000 


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC---ccCCceeEEE
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV---ASDNHSSNLR  236 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~---~~~~~~~~l~  236 (291)
                               ..  ....+.|                    ...+.+.+...+.++.|.|+|.+.+..   ........+.
T Consensus       151 ---------~~--~a~gss~--------------------t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~  199 (741)
T KOG3515|consen  151 ---------GA--GALGSSY--------------------TEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTII  199 (741)
T ss_pred             ---------cc--cccCcee--------------------ccccceeeEEEEecCCceeEcccccccCccccccceeEee
Confidence                     00  0001111                    013456777788899999999999853   3344444444


Q ss_pred             EecC---CCCCCCCc-ccccCCceEEEEEEeecCCCCceEEEEECCEEccC
Q psy14540        237 VNVP---PHIGPFTF-GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ  283 (291)
Q Consensus       237 v~~~---p~~~~~~~-~~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~  283 (291)
                      +..+   ..+..... ....+|+.+.|.|.+..+.|.++++|+++...+..
T Consensus       200 v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~  250 (741)
T KOG3515|consen  200 VEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE  250 (741)
T ss_pred             cccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence            4432   12222222 22899999999999878999999999999887654

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.59  E-value=3.1e-14  Score=88.79  Aligned_cols=86  Identities=27%  Similarity=0.515  Sum_probs=65.6

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEE-CCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      +.+.|.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+.. .++..     ......+.|.|.+++.+|+|.|+|.+.
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~-----~~~g~~~~L~I~~v~~~D~G~Y~C~A~   76 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVV-----QKEGVRSRLTIYNANIEDAGIYRCQAT   76 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEE-----EeCCCeeEEEEecCChHHCEEEEEEEE
Confidence            456788889999999999999999887 899998 4655542 22222     223334679999999999999999999


Q ss_pred             CCCCce-eeeeeEEE
Q psy14540         83 NRVGSQ-THSADMRV   96 (291)
Q Consensus        83 ~~~~~~-~~~~~l~v   96 (291)
                      |..|.. .+++.|.+
T Consensus        77 N~~G~~~~~~i~l~~   91 (92)
T cd05866          77 DAKGQTQEATVVLEI   91 (92)
T ss_pred             cCCCcEEEEEEEEEE
Confidence            988874 55555544

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.59  E-value=2.6e-14  Score=89.83  Aligned_cols=85  Identities=25%  Similarity=0.432  Sum_probs=66.8

Q ss_pred             ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      -|..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++..    .......++|.|.+++.+|+|.|+|.+.|..|
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~----~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   82 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSV----KLEQGKYASLTIKGVTSEDSGKYSINVKNKYG   82 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEE----EEcCCCEEEEEECCCChhhCEEEEEEEEeCCC
Confidence            45677899999999999999889999999999987763 22222    11122235799999999999999999999999


Q ss_pred             ceeeeeeEEE
Q psy14540         87 SQTHSADMRV   96 (291)
Q Consensus        87 ~~~~~~~l~v   96 (291)
                      .....+.|.|
T Consensus        83 ~~~~~~~v~~   92 (92)
T cd05891          83 GETVDVTVSV   92 (92)
T ss_pred             ceeeEEEEEC
Confidence            8887776653

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.59  E-value=2.2e-14  Score=89.66  Aligned_cols=87  Identities=26%  Similarity=0.432  Sum_probs=66.6

Q ss_pred             CCcce--eecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLI--YKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~--~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .|.|.  ..+..+.+.+|++++|.|.+.+. .+.+.|++++..+...+....       ....+|.|.+++.+|+|.|+|
T Consensus         1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C   72 (91)
T cd05740           1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLS-------NDNRTLTFNNVTRSDTGHYQC   72 (91)
T ss_pred             CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEe-------CCCCEEEECcCChhhCEEEEE
Confidence            36564  34456789999999999999998 999999999988765432221       111359999999999999999


Q ss_pred             EEeCCCCc-eeeeeeEEE
Q psy14540         80 TATNRVGS-QTHSADMRV   96 (291)
Q Consensus        80 ~~~~~~~~-~~~~~~l~v   96 (291)
                      .+.|..|. .+..+.|.|
T Consensus        73 ~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          73 EASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EEEcCCCCEEeeeEEEEe
Confidence            99999886 444666655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.59  E-value=1.5e-14  Score=90.05  Aligned_cols=77  Identities=26%  Similarity=0.479  Sum_probs=50.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|++++..+....+...     ....|.|.++..+|.|.|+|.|.|..|....
T Consensus         8 ~~~~~~~~G~~v~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   81 (88)
T cd05851           8 FKDTYALKGQNVTLECFA-LGNPVPVIRWRKILEPMPATAEISM-----SGAVLKIFNIQPEDEGTYECEAENIKGKDKH   81 (88)
T ss_pred             cccEEEeCCCcEEEEEEe-cccCCCEEEEEECCcCCCCCCEEec-----CCCEEEECcCChhhCEEEEEEEEcCCCceEE
Confidence            345678899999999999 7999999999999877654322211     1224555555555555555555555555444


Q ss_pred             ceE
Q psy14540        193 SSN  195 (291)
Q Consensus       193 ~~~  195 (291)
                      ...
T Consensus        82 ~~~   84 (88)
T cd05851          82 QAR   84 (88)
T ss_pred             EEE
Confidence            433

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.59  E-value=1.6e-14  Score=86.66  Aligned_cols=73  Identities=32%  Similarity=0.482  Sum_probs=58.2

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      |.|.|.+.|.|.|.+.|+|++..+..  .++...    ..+.+...|.|.+++.+|+|.|+|.+.|..|..+....|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMH----QDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEE----EcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            57999999999999999999988863  222221    12224457999999999999999999999999888877754

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.59  E-value=1.1e-14  Score=84.71  Aligned_cols=66  Identities=20%  Similarity=0.363  Sum_probs=55.6

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~   97 (291)
                      ++|.|.+.+.|.|.++|+|+|..+....            ....|.|.++..+|+|.|+|.+.|..|...++..+++.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            5799999999999999999999886211            12469999999999999999999999988877777664

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.57  E-value=4.3e-14  Score=84.90  Aligned_cols=74  Identities=18%  Similarity=0.360  Sum_probs=56.5

Q ss_pred             EEEEecCCCCCeeEEEECCeecCCCeeE-eceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540         22 LKCIATGNPTPHISWKLDGYPLAGDRFV-MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR   95 (291)
Q Consensus        22 l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~   95 (291)
                      |.|.+.|.|.|.++|+|+|..+...... ..............|.|.+++..|+|.|+|.+.|..|...+.+.+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            7899999999999999999999744322 1111111223356799999999999999999999999887776553

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.57  E-value=2.8e-14  Score=86.98  Aligned_cols=82  Identities=20%  Similarity=0.400  Sum_probs=61.1

Q ss_pred             CcEEEEEEecC--CCCCeeEEEECCeecCCCeeEeceEEeecc-ceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540         18 PPVSLKCIATG--NPTPHISWKLDGYPLAGDRFVMGQYMSLHG-DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM   94 (291)
Q Consensus        18 ~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l   94 (291)
                      +++.|.|.+..  .+.+.+.|++||+.+...... ..+....+ .....|.|.+++..|+|.|+|.+.+..+....+..|
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~-~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L   79 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDG-DHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL   79 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCC-ccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence            47899999986  447789999999998621000 01111111 122469999999999999999999999999999999


Q ss_pred             EEEcCC
Q psy14540         95 RVYDAP  100 (291)
Q Consensus        95 ~v~~~~  100 (291)
                      .|.++|
T Consensus        80 ~V~~pP   85 (85)
T cd05853          80 IVRGPP   85 (85)
T ss_pred             EEecCC
Confidence            998764

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.57  E-value=2.2e-14  Score=86.47  Aligned_cols=72  Identities=28%  Similarity=0.507  Sum_probs=52.4

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      +|+.+.|.|.+ .|.|.|.+.|++++..+....+.....    ...|.|.++...|.|.|+|.|.|..|.......+
T Consensus         1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   72 (74)
T cd05745           1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSVDRRHLVLS----SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL   72 (74)
T ss_pred             CCCeEEEEeEC-CEecCCEEEEEECCEECCCCCCeEEcc----CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence            58999999999 799999999999999886554433221    2357777777777777777777777665555443

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.57  E-value=2.2e-14  Score=85.62  Aligned_cols=72  Identities=26%  Similarity=0.488  Sum_probs=58.5

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR   95 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~   95 (291)
                      |+.+.|.|.+.+.|.+.+.|+|++..+. ..++.+.      .+  .+|.|.+++.+|+|.|+|.+.|..|.......|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~------~~--g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW------DD--GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc------CC--CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            7889999999999999999999998765 3333221      11  3599999999999999999999999888877765


Q ss_pred             E
Q psy14540         96 V   96 (291)
Q Consensus        96 v   96 (291)
                      |
T Consensus        73 ~   73 (73)
T cd05852          73 V   73 (73)
T ss_pred             C
Confidence            4

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.56  E-value=6.6e-14  Score=87.08  Aligned_cols=82  Identities=28%  Similarity=0.528  Sum_probs=63.8

Q ss_pred             eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS   91 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   91 (291)
                      +.+.+|+.+.|.|.+.+.|.+.+.|+|+|..+........ ...  ......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~--~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~   80 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGG-YKV--RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT   80 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceee-eEE--eCCceEEEEccCCcccCEEEEEEEEeCCCEEEEE
Confidence            4688999999999999999999999999998873221110 011  1123568999999999999999999999988888


Q ss_pred             eeEEE
Q psy14540         92 ADMRV   96 (291)
Q Consensus        92 ~~l~v   96 (291)
                      +.|.|
T Consensus        81 ~~l~v   85 (85)
T cd05857          81 YHLDV   85 (85)
T ss_pred             EEEEC
Confidence            77654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.56  E-value=6.8e-14  Score=87.92  Aligned_cols=82  Identities=20%  Similarity=0.381  Sum_probs=52.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+....++...........|.|..+..+|.|.|+|.+.|..|....
T Consensus         8 p~~v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   86 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV   86 (92)
T ss_pred             CCcEEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence            345788999999999998 6889999999999988765544333222211234555555555555555555555554444


Q ss_pred             ceE
Q psy14540        193 SSN  195 (291)
Q Consensus       193 ~~~  195 (291)
                      .+.
T Consensus        87 ~~~   89 (92)
T cd05891          87 DVT   89 (92)
T ss_pred             EEE
Confidence            433

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.56  E-value=5.6e-14  Score=87.22  Aligned_cols=83  Identities=28%  Similarity=0.434  Sum_probs=60.7

Q ss_pred             CcEEEEEEecCCCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540         18 PPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR   95 (291)
Q Consensus        18 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~   95 (291)
                      +++.|.|.+.+.|.+  .+.|+++|..+....................|.|.+++..|+|.|+|.+.+..|.......|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            578999999988766  579999998876221100000001112235699999999999999999999999999999999


Q ss_pred             EEcCC
Q psy14540         96 VYDAP  100 (291)
Q Consensus        96 v~~~~  100 (291)
                      |..+|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            88754

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.56  E-value=4.9e-14  Score=85.38  Aligned_cols=75  Identities=31%  Similarity=0.614  Sum_probs=59.0

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      |+++.|.|.+.+.|.|.++|+++|..+...... .... .   ....|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~-~~~~-~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPD-PRRH-V---SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCC-ceEE-e---eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            789999999999999999999999887632110 0011 1   1135899999999999999999999999888877776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.56  E-value=3e-14  Score=86.07  Aligned_cols=67  Identities=22%  Similarity=0.371  Sum_probs=55.6

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCC-CeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      |.+.+.|....+.+|++++|.|.+.+.|. ..+.|++|+..+...              ...|.|.++ .+|+|.|+|.+
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~--------------~~~l~i~~~-~~dsG~Y~C~a   65 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT--------------TNSYRIRAA-NNDSGEYRCQT   65 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc--------------CCeEEEeec-ccCCEEeEEEC
Confidence            67888999999999999999999988664 469999999876311              134789999 99999999999


Q ss_pred             eCC
Q psy14540         82 TNR   84 (291)
Q Consensus        82 ~~~   84 (291)
                      .+.
T Consensus        66 ~~~   68 (78)
T cd05752          66 QGS   68 (78)
T ss_pred             CCC
Confidence            753

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.56  E-value=1e-13  Score=88.40  Aligned_cols=91  Identities=26%  Similarity=0.408  Sum_probs=69.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCC-CeE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVED-SGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~   76 (291)
                      ||.|. .+....+.+|+.+.|.|.+.+.|.| .+.|++++..+..   .++.+.... ......++|.|.+++.+| .|.
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~-~~~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDP-SPGGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEec-CCCceEEEEEECCcccccccee
Confidence            56664 4667789999999999999998888 6999999988762   334332221 123445789999999955 899


Q ss_pred             EEEEEeCCCCceeeeeeE
Q psy14540         77 YQCTATNRVGSQTHSADM   94 (291)
Q Consensus        77 y~C~~~~~~~~~~~~~~l   94 (291)
                      |+|.+.|..|.....+.|
T Consensus        80 Y~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          80 YNCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEEcCCCcccEEEEe
Confidence            999999999987776654

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.56  E-value=3.6e-14  Score=90.30  Aligned_cols=89  Identities=21%  Similarity=0.282  Sum_probs=57.3

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      ...+..|+.+.|.|.+ .|+|.|.+.|+|+|.++............              +...                
T Consensus        12 ~~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~~~~~~~~~--------------~~~~----------------   60 (101)
T cd05859          12 LEFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENLTEITTSEH--------------NVQE----------------   60 (101)
T ss_pred             eEEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCcceEEeccc--------------cccc----------------
Confidence            4677789999999999 79999999999999998755432111000              0000                


Q ss_pred             EEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                          ..+.++|.|..+..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus        61 ----~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~  100 (101)
T cd05859          61 ----TRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ  100 (101)
T ss_pred             ----eeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence                0113456666666666666666666666666666666554

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.55  E-value=8.2e-14  Score=83.90  Aligned_cols=73  Identities=27%  Similarity=0.407  Sum_probs=57.9

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      ++|.|.+.+.|.|.+.|+|++..+...  ++..    ...+....+|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~----~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISL----YQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEE----EEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            579999999999999999999988732  2221    112234457999999999999999999999998888777654

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.55  E-value=1.1e-13  Score=87.33  Aligned_cols=83  Identities=31%  Similarity=0.601  Sum_probs=60.3

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+....+..+... .....|.|.++..+|.|.|+|.+.|..|..
T Consensus         8 ~~p~~~~~~~G~~~~L~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   85 (92)
T cd05747           8 TKPRSLTVSEGESARFSCDV-DGEPAPTVTWMREGQIIVSSQRHQITST-EYKSTFEISKVQMSDEGNYTVVVENSEGKQ   85 (92)
T ss_pred             ccCccEEEeCCCcEEEEEEE-eecCCCEEEEEECCEECCCCCcEEEEEc-CCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence            34556889999999999999 7999999999999988766555444322 224567777777777777777777776655


Q ss_pred             CCceE
Q psy14540        191 NHSSN  195 (291)
Q Consensus       191 ~~~~~  195 (291)
                      ...+.
T Consensus        86 ~~~~~   90 (92)
T cd05747          86 EAQFT   90 (92)
T ss_pred             eEEEE
Confidence            54433

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.55  E-value=1.1e-13  Score=83.44  Aligned_cols=73  Identities=29%  Similarity=0.520  Sum_probs=58.9

Q ss_pred             cEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         19 PVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        19 ~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      .+.|.|.+.+.|.|.+.|+++|..+. ..+...     ......+.|.|.+++..|+|.|+|.+.|..|..+..+.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQI-----ETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEE-----EECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            47899999999999999999999885 333222     12234577999999999999999999999998888777654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.55  E-value=5.6e-14  Score=84.93  Aligned_cols=76  Identities=33%  Similarity=0.530  Sum_probs=59.9

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      |+++.|.|.+.+.|.|.|.|+++|+.+........  ....+   ..|.|.+++..|+|.|+|.+.|..|....++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~--~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPS--RKVDG---DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCce--EEecC---CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            78999999999999999999999998762211000  11111   25789999999999999999999999999888877


Q ss_pred             E
Q psy14540         97 Y   97 (291)
Q Consensus        97 ~   97 (291)
                      +
T Consensus        76 ~   76 (76)
T cd05868          76 L   76 (76)
T ss_pred             C
Confidence            3

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.55  E-value=7.1e-14  Score=85.22  Aligned_cols=77  Identities=27%  Similarity=0.528  Sum_probs=60.2

Q ss_pred             cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      |....+.+|+.+.|.|.+.+. .+.+.|+|+|..+.. .++..      .+   ..|.|.+++.+|+|.|+|.+.+..|.
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~------~~---~~L~I~~~~~~DsG~Y~C~a~n~~g~   70 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI------TG---EEVQIKDAVPRDSGLYACVTSSPSGS   70 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE------eC---CEEEECCCChhhCEEEEEEEeCCCCc
Confidence            456778999999999999875 568999999988873 23222      11   25899999999999999999988777


Q ss_pred             eeeeeeEE
Q psy14540         88 QTHSADMR   95 (291)
Q Consensus        88 ~~~~~~l~   95 (291)
                      ....+.++
T Consensus        71 ~~~~~~v~   78 (79)
T cd04973          71 DTTYFSVN   78 (79)
T ss_pred             ccEEEEEe
Confidence            66665554

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.55  E-value=7.4e-14  Score=88.00  Aligned_cols=71  Identities=28%  Similarity=0.551  Sum_probs=43.5

Q ss_pred             ceeecCCCceEEEEEeeCCCC-CceeEEeE-CCEeccC-CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP-PLTISWLK-NGLPILS-DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~-~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      ...+..|+.+.|.|.+ .|.| +|.+.|++ ++..+.. ..+..........+.|.|..+..+|.|.|+|.|.|.
T Consensus         9 ~~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~   82 (96)
T cd05865           9 QGEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE   82 (96)
T ss_pred             ccEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence            3568899999999999 6888 47999998 7766544 223322222222344555555555555555555544

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.55  E-value=5.1e-14  Score=84.06  Aligned_cols=71  Identities=30%  Similarity=0.520  Sum_probs=54.5

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      |+.+.|.|.+ .|.|.|.+.|++++..+....++.+..    ...|.|.++..+|.|.|+|.|.|..|.......|
T Consensus         1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   71 (73)
T cd05852           1 GGRVIIECKP-KAAPKPKFSWSKGTELLVNNSRISIWD----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVL   71 (73)
T ss_pred             CCeEEEEEec-ceeCCCEEEEEeCCEecccCCCEEEcC----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEE
Confidence            6789999999 689999999999998876655555432    2358888888888888888888877776666554

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.54  E-value=7e-14  Score=84.22  Aligned_cols=72  Identities=24%  Similarity=0.315  Sum_probs=49.4

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      +.|.|.+ .|.|.|.+.|++++..+... .+........+...|.|..++.+|.|.|+|.+.|..|.......+
T Consensus         1 v~L~C~v-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   73 (75)
T cd05744           1 VRLECRV-SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL   73 (75)
T ss_pred             CEEEEEE-eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence            4799999 79999999999999988643 333333333334457777777777777777777766665554443

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.54  E-value=3.8e-14  Score=85.03  Aligned_cols=71  Identities=20%  Similarity=0.298  Sum_probs=45.6

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      +.|.|.+ .|.|.|.+.|++++..+... .+......+.+...|.|..+..+|+|.|+|.|.|..|.......
T Consensus         1 v~l~C~v-~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~   72 (75)
T cd05893           1 VRLECRV-SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR   72 (75)
T ss_pred             CEEEEEE-eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence            5799999 79999999999999988643 23333322222334666666666666666666665555444433

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.54  E-value=1.6e-13  Score=86.18  Aligned_cols=86  Identities=27%  Similarity=0.478  Sum_probs=64.3

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEE-CCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      +.+.|....+..|+++.|.|.+.+.|. .+.|++ ++..+.. .+..    ....+...++|+|.+++.+|+|.|+|.+.
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   77 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQIS----VVQNDDVRSTLTIYNANIEDAGIYKCVAT   77 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEE----EEeCCCCEEEEEEecCCcccCEEEEEEEE
Confidence            456788889999999999999998764 899998 5655442 2221    12234456789999999999999999999


Q ss_pred             CCCC-ceeeeeeEE
Q psy14540         83 NRVG-SQTHSADMR   95 (291)
Q Consensus        83 ~~~~-~~~~~~~l~   95 (291)
                      |..| ....++.|.
T Consensus        78 N~~g~~~~~sv~l~   91 (92)
T cd04977          78 DAKGTESEATVNLK   91 (92)
T ss_pred             cCCCCcceeEEEEE
Confidence            8754 345555554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.54  E-value=1e-13  Score=86.23  Aligned_cols=75  Identities=29%  Similarity=0.464  Sum_probs=45.5

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ..+.+|+.+.|.|.+ .|.|.+.+.|+++|..+.................|.|..+...|.|.|+|.+.|..|...
T Consensus         4 ~~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05857           4 HAVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN   78 (85)
T ss_pred             EEcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence            457789999999999 788999999999999886543321110001122344444444444444444444444433

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.53  E-value=2.4e-13  Score=85.29  Aligned_cols=80  Identities=23%  Similarity=0.424  Sum_probs=52.5

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|++++..+......... .......|.|..+...|.|.|+|.|.|..|....
T Consensus         7 p~~~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~   84 (90)
T cd04972           7 PNATVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQTRTDTLE-TTVDIYNLQLSNITSETQTTVTCTAENPVGQANV   84 (90)
T ss_pred             CcCEEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCCccEEEE-ecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence            344568899999999999 69999999999999887543332111 1122345666666666666666666665555444


Q ss_pred             ce
Q psy14540        193 SS  194 (291)
Q Consensus       193 ~~  194 (291)
                      ..
T Consensus        85 ~~   86 (90)
T cd04972          85 SV   86 (90)
T ss_pred             EE
Confidence            43

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.52  E-value=4.4e-14  Score=82.18  Aligned_cols=61  Identities=26%  Similarity=0.379  Sum_probs=41.4

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      +.|.|.+ .|.|.|.+.|+|+|.++...         .....|.|..+..+|+|.|+|.|+|..|....+.
T Consensus         1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~---------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~   61 (67)
T cd05863           1 VKLPVKV-AAYPPPEFQWYKDGKLISGK---------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRI   61 (67)
T ss_pred             CEEEEEE-EEeCCCEEEEEECCEECccc---------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEE
Confidence            4799999 79999999999999988521         1133566666666666666666666555444333

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.52  E-value=1.2e-13  Score=82.18  Aligned_cols=70  Identities=21%  Similarity=0.324  Sum_probs=56.6

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~   97 (291)
                      +.|.|.+.+.|.+.+.|+|+|..+.......        ....+|.|.+++.+|+|.|+|.+.|..|.....+.+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--------~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK--------KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEE--------cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4799999999999999999999887432111        112569999999999999999999999888777777664

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.52  E-value=9.2e-14  Score=86.09  Aligned_cols=72  Identities=32%  Similarity=0.573  Sum_probs=48.7

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      +....+..|+.+.|.|.+ .|.|.|.+.|++++..+....+....     ...|.|..+...|.|.|+|.|.|..|..
T Consensus         6 p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~   77 (85)
T cd05728           6 ISDTEADIGSSLRWECKA-SGNPRPAYRWLKNGQPLASENRIEVE-----AGDLRITKLSLSDSGMYQCVAENKHGTI   77 (85)
T ss_pred             CCccEEcCCCcEEEEEEe-eEeCCCEEEEEECCEECCCCCeEEEe-----CCEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence            445778899999999998 79999999999999987654433321     1235555555555555555555555443

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.52  E-value=4.6e-13  Score=82.54  Aligned_cols=81  Identities=22%  Similarity=0.410  Sum_probs=57.7

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC--ceeeeeeE
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG--SQTHSADM   94 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~--~~~~~~~l   94 (291)
                      |++++|.|.+.+.|.+.+.|+++++....................+.|.|.+++.+|+|.|+|.+.+..+  ....++.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            7899999999998889999999776443111110011111233467899999999999999999997655  45666677


Q ss_pred             EEE
Q psy14540         95 RVY   97 (291)
Q Consensus        95 ~v~   97 (291)
                      +|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.52  E-value=2.1e-13  Score=86.00  Aligned_cols=80  Identities=31%  Similarity=0.526  Sum_probs=61.4

Q ss_pred             CCcceeecceeeee---cCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecC-CCCCeE
Q psy14540          2 HPQLIYKFIQQTLQ---PGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVR-VEDSGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~---~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~   76 (291)
                      .|.|+..|.+..+.   +|+.++|.|.+.+.|.+.++|+++|..+... ....   ....    ..|.|.++. ..|+|.
T Consensus         1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~---~~~~----g~L~i~~~~~~~D~G~   73 (94)
T cd05848           1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRY---SLID----GNLIISNPSEVKDSGR   73 (94)
T ss_pred             CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceE---EeeC----CeEEEccCCccCcCEE
Confidence            37888889887664   4789999999999999999999999988622 1111   1111    347888874 689999


Q ss_pred             EEEEEeCCCCce
Q psy14540         77 YQCTATNRVGSQ   88 (291)
Q Consensus        77 y~C~~~~~~~~~   88 (291)
                      |+|.+.|..|..
T Consensus        74 Y~C~A~N~~G~~   85 (94)
T cd05848          74 YQCLATNSIGSI   85 (94)
T ss_pred             EEEEEEcCCCeE
Confidence            999999988865

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.51  E-value=1.1e-13  Score=84.21  Aligned_cols=75  Identities=31%  Similarity=0.459  Sum_probs=59.5

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      |+.+.|.|.+.+.|.|.+.|++++..+.......  ...   .....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~--~~~---~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP--RRR---VDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc--eEE---ccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            7899999999999999999999998876322111  011   11245899999999999999999999999888887776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.51  E-value=1e-13  Score=87.38  Aligned_cols=75  Identities=39%  Similarity=0.762  Sum_probs=51.8

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+....... ....|.|.++..+|.|.|+|.+.|..|.
T Consensus         7 ~~~~~v~~G~~~~l~c~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~~g~   81 (90)
T PF07679_consen    7 PKDVTVKEGESVTLECEV-SGNPPPTVTWYKNGRPLTSSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNSSGE   81 (90)
T ss_dssp             SSEEEEETTSEEEEEEEE-EESSSSEEEEEETTEEEESSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEETTEE
T ss_pred             cCCEEEeCCCEEEEEEEE-EeCCCCcccccccccceeeeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEECCCE
Confidence            456788999999999999 57799999999999999876666554433 3444555555555554444444444433

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.51  E-value=1.6e-13  Score=82.47  Aligned_cols=72  Identities=29%  Similarity=0.521  Sum_probs=58.5

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR   95 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~   95 (291)
                      |+.+.|.|.+.+.|.+.+.|++++..+. ..+....      ..  .+|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~------~~--~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW------PD--GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC------CC--CeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            7889999999999999999999998876 2232221      11  2499999999999999999999999888877765


Q ss_pred             E
Q psy14540         96 V   96 (291)
Q Consensus        96 v   96 (291)
                      |
T Consensus        73 V   73 (73)
T cd04969          73 V   73 (73)
T ss_pred             C
Confidence            4

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.51  E-value=3.3e-13  Score=82.24  Aligned_cols=75  Identities=17%  Similarity=0.321  Sum_probs=56.1

Q ss_pred             EEEEEecCCCCCeeEEEECCeecCCCee-EeceEEe--eccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540         21 SLKCIATGNPTPHISWKLDGYPLAGDRF-VMGQYMS--LHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR   95 (291)
Q Consensus        21 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~   95 (291)
                      .|.|.+.+.|.|.++|+|+|..+..... .......  ........|.|.+++..|+|.|+|.+.|..|.....+.+.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            3789999999999999999999874321 1111111  1123346799999999999999999999999888776654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.51  E-value=3.5e-13  Score=85.55  Aligned_cols=86  Identities=34%  Similarity=0.521  Sum_probs=62.4

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeec-----CCCCCeEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV-----RVEDSGIYQC   79 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C   79 (291)
                      |..+|.+..+.+|+++.|.|.+.+.|.+.+.|+|+|..+......  ......+   .+|.|.++     ...|+|.|+|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~--~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C   76 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDE--RRQQLPN---GSLLITSVVHSKHNKPDEGFYQC   76 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCc--ceEEccC---CeEEEeeeeccCCCCCcCEEEEE
Confidence            567888889999999999999999999999999999988732110  0011111   12455554     6889999999


Q ss_pred             EEeCC-CCce-eeeeeEE
Q psy14540         80 TATNR-VGSQ-THSADMR   95 (291)
Q Consensus        80 ~~~~~-~~~~-~~~~~l~   95 (291)
                      .+.|. .|.. ++.+.|.
T Consensus        77 ~a~N~~~G~~~s~~~~l~   94 (95)
T cd05722          77 VAQNDSLGSIVSRTARLT   94 (95)
T ss_pred             EEECCccCcEEEeeeEEe
Confidence            99998 7764 4455544

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.50  E-value=2.4e-13  Score=81.67  Aligned_cols=69  Identities=26%  Similarity=0.436  Sum_probs=46.0

Q ss_pred             EEEEeeCCCCCceeEEeECCEeccCCCceEE----eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        126 VQCLVTKGDPPLTISWLKNGLPILSDAEITI----RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       126 l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      |.|.+ .|.|.|+++|+|+|.++....+...    .........|.|..+...|.|.|+|.|+|..|....++.
T Consensus         3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~   75 (79)
T cd05855           3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVS   75 (79)
T ss_pred             EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEE
Confidence            67888 7999999999999999976554321    111223445666666666666666666666665555443

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.50  E-value=4.6e-13  Score=84.49  Aligned_cols=82  Identities=26%  Similarity=0.445  Sum_probs=61.9

Q ss_pred             CCcceeecceeeeecC---CcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecC-CCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPG---PPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR-VEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y   77 (291)
                      .|.|...|.+..+.+|   ++++|.|.+.+.|.+.++|+++|..+......  ......    ..|.|.+.. ..|+|.|
T Consensus         1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~--~~~~~~----g~L~I~~~~~~~D~G~Y   74 (94)
T cd05850           1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPES--RYTLVA----GNLVINNPQKARDAGSY   74 (94)
T ss_pred             CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCc--eEEEEC----CeEEEccCCccCcCEEE
Confidence            4788999998887776   57999999999999999999999988622100  011111    347787755 5899999


Q ss_pred             EEEEeCCCCcee
Q psy14540         78 QCTATNRVGSQT   89 (291)
Q Consensus        78 ~C~~~~~~~~~~   89 (291)
                      +|.+.|..|...
T Consensus        75 ~C~A~N~~G~~~   86 (94)
T cd05850          75 QCLAINRCGTVV   86 (94)
T ss_pred             EEEEEcCcCcEE
Confidence            999999988754

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.50  E-value=2.5e-13  Score=80.98  Aligned_cols=70  Identities=31%  Similarity=0.587  Sum_probs=55.4

Q ss_pred             cEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         19 PVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        19 ~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      ++.|.|.+.|.|.|.++|+|++..+.. .++...    ..    ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~----~~----~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIV----KE----HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEE----ec----CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            478999999999999999999987763 222221    11    23678899999999999999999999888877654

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.50  E-value=3e-13  Score=84.88  Aligned_cols=79  Identities=27%  Similarity=0.489  Sum_probs=61.6

Q ss_pred             CCcceeecceeeeecCC---cEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecC-CCCCe
Q psy14540          2 HPQLIYKFIQQTLQPGP---PVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVR-VEDSG   75 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~---~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G   75 (291)
                      .|.|+..|.+..+.++.   .+.|.|.+.|.|.+.++|++++..+..  .++..     . +   ..|.|.++. ..|+|
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-----~-~---g~L~I~~~~~~~D~G   71 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-----V-G---GNLVINNPDKYKDAG   71 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-----E-C---CEEEECcCCcCCCCE
Confidence            48888888887666654   799999999999999999999988752  22211     1 1   358898875 68999


Q ss_pred             EEEEEEeCCCCcee
Q psy14540         76 IYQCTATNRVGSQT   89 (291)
Q Consensus        76 ~y~C~~~~~~~~~~   89 (291)
                      .|+|.+.|..|...
T Consensus        72 ~Y~C~A~N~~G~~~   85 (93)
T cd05849          72 RYVCIVSNIYGKVR   85 (93)
T ss_pred             EEEEEEEeCcceEE
Confidence            99999999888653

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.50  E-value=1.7e-13  Score=80.84  Aligned_cols=69  Identities=20%  Similarity=0.361  Sum_probs=55.0

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~   97 (291)
                      +.|.|.+.+.|.|.+.|+|+|..+..... .     ..   ...|.|.+++.+|+|.|+|.+.|..|.......+.+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~-~-----~~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT-F-----KR---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE-E-----cc---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            46899999999999999999999874321 1     11   1359999999999999999999999877766666553

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.49  E-value=3.2e-13  Score=82.20  Aligned_cols=72  Identities=32%  Similarity=0.556  Sum_probs=56.5

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeee
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD   93 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   93 (291)
                      |+++.|.|.+.+.|.|.+.|++++..+.. .++..     ........|.|.+++.+|+|.|+|.+.|..|.......
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   73 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSI-----TSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD   73 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEE-----EECCCEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence            78999999999999999999999887763 23222     12233467999999999999999999998887655443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.49  E-value=2.7e-13  Score=83.83  Aligned_cols=79  Identities=32%  Similarity=0.575  Sum_probs=61.4

Q ss_pred             eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS   91 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   91 (291)
                      ..+..|+++.|.|.+.+.|.+.+.|++++..+.......      .......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   77 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE------SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT   77 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce------ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence            346789999999999998899999999998765322111      11223679999999999999999999999887777


Q ss_pred             eeEEE
Q psy14540         92 ADMRV   96 (291)
Q Consensus        92 ~~l~v   96 (291)
                      +.|.|
T Consensus        78 ~~v~v   82 (82)
T cd05856          78 YKVDV   82 (82)
T ss_pred             EEEeC
Confidence            66543

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.49  E-value=4e-13  Score=83.83  Aligned_cols=79  Identities=33%  Similarity=0.623  Sum_probs=60.9

Q ss_pred             ecceeeeecCCcEEEEEEe-cCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          8 KFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      .|....+.+|+++.|.|.+ .+.|.+.+.|++++..+...  +...     . .  ...|.|.+++.+|+|.|+|.+.|.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~-----~-~--~~~L~I~~~~~~D~G~Y~C~a~N~   73 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRI-----V-D--DGNLLIAEARKSDEGTYKCVATNM   73 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEE-----c-c--CCEEEEeECCcccCEEEEEEEEec
Confidence            4677889999999999998 67889999999999887632  1111     1 1  135999999999999999999998


Q ss_pred             CCce-eeeeeE
Q psy14540         85 VGSQ-THSADM   94 (291)
Q Consensus        85 ~~~~-~~~~~l   94 (291)
                      .|.. +..+.|
T Consensus        74 ~G~~~s~~~~l   84 (86)
T cd05724          74 VGERESAAARL   84 (86)
T ss_pred             cCceeeeeEEE
Confidence            8764 334433

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.49  E-value=2.9e-13  Score=84.99  Aligned_cols=83  Identities=20%  Similarity=0.263  Sum_probs=61.6

Q ss_pred             ceeeeecCCcEEEEEEecC-----CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540         10 IQQTLQPGPPVSLKCIATG-----NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      ....+.+|+.+.|.|.+.+     .|.+.|.|||++..+........ +....   ...|.|.+++.+|+|.|+|.+.|.
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~-r~~~~---~~~L~I~~~~~~DsG~Y~C~~~N~   82 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERS-RMHQQ---KDLLWFLPAALEDSGLYTCVVRNS   82 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccc-eeeec---CCeEEEccCCcccCeEEEEEEcCC
Confidence            4567889999999999988     57889999999876432110001 11111   145899999999999999999999


Q ss_pred             CCceeeeeeEEE
Q psy14540         85 VGSQTHSADMRV   96 (291)
Q Consensus        85 ~~~~~~~~~l~v   96 (291)
                      .|.....+.|.|
T Consensus        83 ~g~~~~~~~L~v   94 (94)
T cd05756          83 TYCMKVSISLTV   94 (94)
T ss_pred             CccEEEEEEEEC
Confidence            888887776654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.49  E-value=2.2e-13  Score=81.21  Aligned_cols=70  Identities=36%  Similarity=0.588  Sum_probs=55.8

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      +.|.|.+.|.|.|.+.|++++..+.......     .  ....+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~-----~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKK-----L--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeE-----E--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4799999999999999999987765332211     1  11246999999999999999999999998888777765

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.48  E-value=2.9e-13  Score=80.72  Aligned_cols=69  Identities=29%  Similarity=0.531  Sum_probs=49.2

Q ss_pred             ceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       123 ~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      .+.|.|.+ .|.|.|.++|++++..+....+......    ..|.+..+..+|.|.|+|.|.|..|.......+
T Consensus         1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~~~~~~~~~~----~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   69 (71)
T cd05723           1 DVIFECEV-TGKPTPTVKWVKNGDMVIPSDYFKIVKE----HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQL   69 (71)
T ss_pred             CEEEEEEE-EEeCCCEEEEEECCeECCCCCCEEEEec----CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence            47899999 6999999999999988866555443322    236666777777777777777777665555443

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.48  E-value=4.4e-13  Score=81.71  Aligned_cols=74  Identities=27%  Similarity=0.488  Sum_probs=52.7

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      ...+.+|+.+.|.|.+ .+. .+.+.|+++|.++....+....     ...|.|..+..+|+|.|+|.+.|..|.....+
T Consensus         3 ~~~~~~G~~v~l~C~~-~~~-~~~v~W~k~g~~l~~~~~~~~~-----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~   75 (79)
T cd04973           3 SYSAHPGDLLQLRCRL-RDD-VQSINWTKDGVQLGENNRTRIT-----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYF   75 (79)
T ss_pred             cEEecCCCCEEEEEEe-cCC-CceEEEeeCCcCCCCCceEEEe-----CCEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence            4678899999999998 454 5689999999988665544332     23577777777777777777777666554444


Q ss_pred             E
Q psy14540        195 N  195 (291)
Q Consensus       195 ~  195 (291)
                      .
T Consensus        76 ~   76 (79)
T cd04973          76 S   76 (79)
T ss_pred             E
Confidence            3

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.48  E-value=4.4e-13  Score=80.87  Aligned_cols=70  Identities=23%  Similarity=0.451  Sum_probs=46.2

Q ss_pred             ceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       123 ~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      .+.|.|.+ .|.|.|.+.|+++|..+....+..+... .....|.|..+..+|.|.|+|.|.|..|.....+
T Consensus         1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   70 (74)
T cd05748           1 SVRLEVPI-SGRPTPTVTWSKDGKPLKLSGRVQIETT-ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI   70 (74)
T ss_pred             CEEEEeeE-eeeCCCeEEEEECCEEcCCCCeEEEEEC-CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEE
Confidence            36899999 7999999999999998865544443322 2244566666666666666666666555544443

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.48  E-value=4.5e-13  Score=81.41  Aligned_cols=73  Identities=26%  Similarity=0.489  Sum_probs=58.0

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      |...|.++.+.+|+++.|.|.+.|.|.| .|.|+++|..+... ..         ...+.|.|.++  .|+|.|.|.+.|
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-~~---------~~~s~L~i~~~--~d~g~Y~C~A~N   68 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-PA---------PSPSVLNVPGL--NETSKFSCEAHN   68 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-CC---------CCCCEEEEccc--cCCeEEEEEEEe
Confidence            4667888999999999999999999999 79999999987631 00         11135778776  588999999999


Q ss_pred             CCCcee
Q psy14540         84 RVGSQT   89 (291)
Q Consensus        84 ~~~~~~   89 (291)
                      ..|...
T Consensus        69 ~~G~~~   74 (81)
T cd05749          69 AKGVTT   74 (81)
T ss_pred             ccCcEE
Confidence            888643

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.48  E-value=4.6e-13  Score=81.54  Aligned_cols=72  Identities=26%  Similarity=0.387  Sum_probs=52.2

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      |+.+.|.|.+ .|.|.|.+.|++++..+....+...... .....|.|.++..+|.|.|+|.+.|..|......
T Consensus         1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   72 (78)
T cd05743           1 GETVEFTCVA-TGVPTPIINWRLNWGHVPDSARVSITSE-GGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP   72 (78)
T ss_pred             CCEEEEEEEE-EEecCCEEEEEECCeECCCCCCEEEEEC-CCEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence            6789999999 6999999999999988766555443322 2245677777777777777777777776554443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.48  E-value=3.5e-13  Score=85.63  Aligned_cols=36  Identities=31%  Similarity=0.575  Sum_probs=31.1

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD  151 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~  151 (291)
                      ...+..|+.+.|.|.+ .|.|.+.+.|+++|..+...
T Consensus        12 ~~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~   47 (95)
T cd05730          12 NATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESG   47 (95)
T ss_pred             ceEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCC
Confidence            4577899999999999 79999999999999887543

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.48  E-value=5.3e-13  Score=81.40  Aligned_cols=81  Identities=21%  Similarity=0.400  Sum_probs=57.9

Q ss_pred             CceEEEEEeeC-CCCCceeEEeECCEeccCCC---ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE
Q psy14540        122 DRAGVQCLVTK-GDPPLTISWLKNGLPILSDA---EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR  197 (291)
Q Consensus       122 ~~~~l~C~~~~-~~p~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  197 (291)
                      +++.|.|.+.. +.+.+.|.|++||.++....   ++.....                                      
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~--------------------------------------   42 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGG--------------------------------------   42 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEecc--------------------------------------
Confidence            36789999843 45578999999999985211   1110000                                      


Q ss_pred             EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        198 VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       198 ~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                       ....+.|.|.+++..|+|.|+|.|.|..+..+++..|.|..||
T Consensus        43 -~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP   85 (85)
T cd05853          43 -QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP   85 (85)
T ss_pred             -CCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence             0113468888888888889999999988888888888888776

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.48  E-value=3.3e-13  Score=81.75  Aligned_cols=72  Identities=24%  Similarity=0.427  Sum_probs=50.4

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCCce-EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI-TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      |+.+.|.|.+ .|.|.|.++|+++|.++...... ....   ....|.|.++..+|+|.|+|.+.|..|.....+.+
T Consensus         1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   73 (76)
T cd05867           1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRHV---SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHV   73 (76)
T ss_pred             CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEEe---eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence            6789999999 79999999999999987653221 1111   12357777777777777777777777665555444

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.47  E-value=5.1e-13  Score=83.52  Aligned_cols=76  Identities=26%  Similarity=0.468  Sum_probs=49.7

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +....+.+|+.+.|.|.+ .|.|.+.+.|++++..+.......     .....|.|.+++.+|+|.|+|.+.|..|....
T Consensus         8 p~~~~~~~g~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   81 (88)
T cd04968           8 PKDTYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMPSSAEIS-----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTH   81 (88)
T ss_pred             CCceEEeCCCcEEEEEEe-eEeCCCEEEEEECCCcCCCccEEE-----EeCCEEEECCCCcccCEEEEEEEEECCCcEEE
Confidence            345677899999999999 799999999999887654332211     11234566666666666666666555555444


Q ss_pred             ce
Q psy14540        193 SS  194 (291)
Q Consensus       193 ~~  194 (291)
                      ..
T Consensus        82 ~~   83 (88)
T cd04968          82 QG   83 (88)
T ss_pred             EE
Confidence            33

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.47  E-value=2.7e-13  Score=81.95  Aligned_cols=72  Identities=26%  Similarity=0.427  Sum_probs=44.3

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      |+.+.|.|.+ .|.|.|.++|+++|.++...........  ....|.+..+...|.|.|+|.|.|..|....+..
T Consensus         1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~   72 (76)
T cd05868           1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAF   72 (76)
T ss_pred             CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence            6789999999 7999999999999998854321110000  0124555555555555555555555554444433

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.47  E-value=5.1e-13  Score=83.77  Aligned_cols=80  Identities=28%  Similarity=0.471  Sum_probs=58.2

Q ss_pred             CCcEEEEEEecCCCCCeeEEEEC----CeecCCC-e--eEece--EEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLD----GYPLAGD-R--FVMGQ--YMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~----~~~~~~~-~--~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      |+.+.|.|.+.+.|.|.++|+++    +..+... .  .....  .........+.|.|.+++.+|+|.|+|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999984    3333311 1  11000  00111123367999999999999999999999999


Q ss_pred             eeeeeeEEE
Q psy14540         88 QTHSADMRV   96 (291)
Q Consensus        88 ~~~~~~l~v   96 (291)
                      ...+..|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            888888876

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.47  E-value=5.5e-13  Score=82.54  Aligned_cols=80  Identities=21%  Similarity=0.409  Sum_probs=59.3

Q ss_pred             CCcEEEEEEecCC--CCCeeEEEECCeecCCCeeEe-ceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeee
Q psy14540         17 GPPVSLKCIATGN--PTPHISWKLDGYPLAGDRFVM-GQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD   93 (291)
Q Consensus        17 g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   93 (291)
                      |+.+.|.|.+.+.  |.+.+.|++++..+....... ...........+.|.|.+++.+|+|.|+|.+.+..+....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999987  788999999877654221110 0111112234578999999999999999999998888887777


Q ss_pred             EEE
Q psy14540         94 MRV   96 (291)
Q Consensus        94 l~v   96 (291)
                      +.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            665

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.47  E-value=1e-12  Score=81.73  Aligned_cols=85  Identities=26%  Similarity=0.494  Sum_probs=59.9

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  199 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~  199 (291)
                      |+.+.|.|.+ .|.|.+.+.|++++..+.... ++.+....            ..+                        
T Consensus         1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~------------~~~------------------------   43 (88)
T cd05735           1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPEMSRYLVSTKE------------VGD------------------------   43 (88)
T ss_pred             CCeEEEEEEE-ECCCCCEEEEeeCCEECCCCCCcEEEEEec------------CCC------------------------
Confidence            7889999999 688999999999998775432 22111100            000                        


Q ss_pred             ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540        200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH  242 (291)
Q Consensus       200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~  242 (291)
                      ...+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus        44 ~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~   86 (88)
T cd05735          44 EVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD   86 (88)
T ss_pred             cEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence            0134677788888888888888888888888888888877664

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.47  E-value=3.9e-13  Score=80.78  Aligned_cols=71  Identities=31%  Similarity=0.518  Sum_probs=54.6

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      |+.+.|.|.+ .|.|.+.+.|++++..+....+.....    ...|.|.++..+|.|.|+|.+.|..|.......+
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (73)
T cd04969           1 GGDVIIECKP-KAAPKPTISWSKGTELLTNSSRICIWP----DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSL   71 (73)
T ss_pred             CCeEEEEEee-eEcCCCEEEEEECCEEcccCCCEEECC----CCeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence            6789999998 789999999999999887665554432    2358888888888888888888877776655544

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.47  E-value=5.6e-13  Score=80.83  Aligned_cols=73  Identities=29%  Similarity=0.525  Sum_probs=53.6

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCcee--eeeeEEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQT--HSADMRVY   97 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~--~~~~l~v~   97 (291)
                      ++|.|.+.+.|.|.+.|+|+|..+.......   ....  ....|.|.+++.+|+|.|.|.+.|..|...  ..+.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~---~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNY---SVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccE---EEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            5799999999999999999999876322111   0111  123699999999999999999999888754  34455443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.47  E-value=7.3e-13  Score=78.18  Aligned_cols=68  Identities=25%  Similarity=0.504  Sum_probs=52.4

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM   94 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l   94 (291)
                      |++++|.|.+.+.|.|.|.|+|++..+.......      .  ....|.|.++  .|+|.|+|.+.|..|....+..|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~------~--~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMP------V--GRNVLELTNI--YESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCcccee------c--CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence            7889999999999999999999998876322110      1  1235888886  48999999999999987766554

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.47  E-value=7e-13  Score=83.03  Aligned_cols=80  Identities=25%  Similarity=0.473  Sum_probs=57.4

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECC----eecCCC--ee-EeceE--EeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDG----YPLAGD--RF-VMGQY--MSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~----~~~~~~--~~-~~~~~--~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      |+.++|.|.+.+.|.|.|+|+|++    ..+...  .. .....  ..........|.|.+++.+|+|.|+|.+.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            788999999999999999999964    222211  10 00000  0011122356999999999999999999999999


Q ss_pred             eeeeeeEEE
Q psy14540         88 QTHSADMRV   96 (291)
Q Consensus        88 ~~~~~~l~v   96 (291)
                      ...++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            888888876

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.47  E-value=4.4e-13  Score=79.62  Aligned_cols=69  Identities=30%  Similarity=0.529  Sum_probs=55.3

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      ++|.|.+.+.|.+.+.|++++..+...++...        ....|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL--------DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEe--------eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            57999999999999999999877664433221        1135999999999999999999999998887776654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.46  E-value=4e-13  Score=79.65  Aligned_cols=67  Identities=33%  Similarity=0.670  Sum_probs=53.9

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM   94 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l   94 (291)
                      |.|.|.+.+.|.|.+.|+|++..+. ..++....        ...|.|.+++.+|+|.|+|.+.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP--------EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECC--------CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            5799999999999999999998876 33332211        1359999999999999999999999988777655

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.46  E-value=5.1e-13  Score=83.82  Aligned_cols=81  Identities=30%  Similarity=0.482  Sum_probs=60.3

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecC---CCe-eEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeee
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLA---GDR-FVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSA   92 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   92 (291)
                      |+.++|.|.+.+.|.+.+.|++++..+.   ... ........ ..  ...|+|.+++.+|+|.|+|.+.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-SQ--TGDLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-CC--CCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            7899999999999999999999876431   000 00011111 11  13599999999999999999999999999999


Q ss_pred             eEEEEcCC
Q psy14540         93 DMRVYDAP  100 (291)
Q Consensus        93 ~l~v~~~~  100 (291)
                      .|.|.+..
T Consensus        78 ~l~V~~~~   85 (90)
T cd05726          78 YLEVTDVI   85 (90)
T ss_pred             EEEEeecc
Confidence            99998643

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.45  E-value=7.4e-13  Score=80.68  Aligned_cols=69  Identities=30%  Similarity=0.487  Sum_probs=44.2

Q ss_pred             EEEEeeCCCCCceeEEeECCEeccCCCceEEec------cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRS------SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       126 l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      |.|.+ .|.|.|.++|+++|.++..........      .......|.|..+...|.|.|+|.|.|..|....++.
T Consensus         3 i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~   77 (81)
T cd04971           3 IPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSIS   77 (81)
T ss_pred             EEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEE
Confidence            68888 799999999999999987655322111      1122345666666666666666666666665554443

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.45  E-value=2.9e-13  Score=80.57  Aligned_cols=61  Identities=33%  Similarity=0.442  Sum_probs=38.9

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      +.|.|.+ .|.|.|.+.|+++|.++....+...     ....|.|.++...|+|.|+|.+.|..|..
T Consensus         1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~~~~~~-----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~   61 (71)
T cd04976           1 VRLPVKV-KAYPPPEIQWYKNGKLISEKNRTKK-----SGHSLTIKDVTEEDAGNYTVVLTNKQAKL   61 (71)
T ss_pred             CEEEeEE-EEeCCCEEEEEECCEECCCCCEEEc-----CCCEEEECcCCHHHCEEEEEEEEcCCccE
Confidence            4689999 7999999999999998865532211     12345555555555555555555544443

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.45  E-value=4.3e-13  Score=81.50  Aligned_cols=67  Identities=27%  Similarity=0.429  Sum_probs=39.9

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      |+.+.|.|.+ .|.|.|.+.|++++..+..........  .....|.|..+...|.|.|+|.|.|..|..
T Consensus         1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~   67 (76)
T cd04978           1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRR--VDGGTLILSNVQPNDTAVYQCNASNVHGYL   67 (76)
T ss_pred             CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcceEE--ccCCEEEECCCChhhCEEEEEEEEccCCeE
Confidence            6789999999 799999999999998876443211000  012234444444444444444444444433

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.44  E-value=1.4e-12  Score=78.84  Aligned_cols=73  Identities=38%  Similarity=0.660  Sum_probs=53.7

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      ++|.|.+.+.|.|.++|+|++.... ....  .........  ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARE--RRMHVMPED--DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccc--cceEEecCC--CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4689999999999999999876422 1110  000111111  35899999999999999999999998888888776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.44  E-value=4.7e-13  Score=78.91  Aligned_cols=64  Identities=25%  Similarity=0.481  Sum_probs=42.3

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      +.|.|.+ .|.|.|.+.|+++|.++......  .    ....|.|..+..+|.|.|+|.|.|..|......
T Consensus         1 ~~~~c~v-~G~P~P~v~W~k~g~~l~~~~~~--~----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~   64 (70)
T cd05864           1 VKIPVKY-YGYPPPEVKWYKNGQLIVLNHTF--K----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRH   64 (70)
T ss_pred             CEEEeEE-EEeCCCEEEEEECCEECCCCCEE--c----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEE
Confidence            4689999 79999999999999998654221  1    122466666666666666666666655444433

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.44  E-value=5.4e-13  Score=79.12  Aligned_cols=67  Identities=30%  Similarity=0.588  Sum_probs=50.6

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      +.|.|.+ .|.|.|.+.|++++..+....+..+..    ...|.|..+...|.|.|+|.|.|..|.......
T Consensus         1 v~L~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   67 (69)
T cd05746           1 VQIPCSA-QGDPEPTITWNKDGVQVTESGKFHISP----EGYLAIRDVGVADQGRYECVARNTIGYASVSMV   67 (69)
T ss_pred             CEeEecc-eEeCCCEEEEEECCEECCCCCCEEECC----CCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence            5799999 699999999999999887655544432    235888888888888888888887776655443

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.44  E-value=2.3e-12  Score=82.17  Aligned_cols=30  Identities=20%  Similarity=0.501  Sum_probs=26.8

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      ....+.+|+.++|.|.+ .|.|.|.+.|+++
T Consensus         9 ~~~~~~~G~~v~l~C~~-~G~P~p~i~W~k~   38 (98)
T cd05870           9 KNETTVENGAATLSCKA-EGEPIPEITWKRA   38 (98)
T ss_pred             ccEEEcCCCcEEEEEec-ccCCCCeEEEEEC
Confidence            45778899999999999 7999999999994

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.44  E-value=7e-13  Score=79.43  Aligned_cols=70  Identities=41%  Similarity=0.687  Sum_probs=55.4

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      +.|.|.+.+.|.|.+.|++++..+.......       ......|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKF-------ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeE-------ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            5799999999999999999988765332211       111246999999999999999999999998887777765

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.44  E-value=2.3e-12  Score=80.88  Aligned_cols=75  Identities=20%  Similarity=0.319  Sum_probs=54.1

Q ss_pred             cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC---CCeeEe-ceEE-eeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA---GDRFVM-GQYM-SLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~-~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      ..++++.+|+++.|.|.+.+.|.+.+.|++++..+.   ...... .+.. .........|.|.+++.+|+|.|+|.+..
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            356789999999999999998889999999875431   111111 1111 11222457899999999999999999875

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.43  E-value=3.8e-12  Score=79.78  Aligned_cols=91  Identities=26%  Similarity=0.422  Sum_probs=68.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCC-CeE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVED-SGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~   76 (291)
                      ||.| .....+.+.+|+.+.|.|.+.+.|.| .|.|.+++..+..   .++.+... .......+.|.|.++...| .|.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~-~~~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERT-STGSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEE-ccCCCcEEEEEECCCccccCCcE
Confidence            6766 55667789999999999999776654 5899998877652   34443222 1234567899999998877 789


Q ss_pred             EEEEEeCCCCceeeeeeE
Q psy14540         77 YQCTATNRVGSQTHSADM   94 (291)
Q Consensus        77 y~C~~~~~~~~~~~~~~l   94 (291)
                      |.|.+.|..|.....+.|
T Consensus        80 Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          80 YNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEEeCCccceEEEEe
Confidence            999999999988777655

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.43  E-value=2.1e-12  Score=79.72  Aligned_cols=80  Identities=33%  Similarity=0.547  Sum_probs=55.0

Q ss_pred             CceEEEEEeeCCCCCc--eeEEeECCEeccCCC---ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        122 DRAGVQCLVTKGDPPL--TISWLKNGLPILSDA---EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       122 ~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      ++++|.|.+ .|.|.+  .+.|++++.++....   +.....                                      
T Consensus         1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~--------------------------------------   41 (85)
T cd05854           1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME--------------------------------------   41 (85)
T ss_pred             CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEE--------------------------------------
Confidence            468999999 688876  689999998875422   110000                                      


Q ss_pred             EEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                       +....+.|.|.+++..|+|.|+|.|.|..|...++..|.|..+|
T Consensus        42 -~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P   85 (85)
T cd05854          42 -VKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP   85 (85)
T ss_pred             -ecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence             00113457777777788888888888888888888888887765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.43  E-value=2.3e-12  Score=82.14  Aligned_cols=34  Identities=18%  Similarity=0.350  Sum_probs=29.1

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      ...+.+|+.+.|.|.+ .|.|.+.+.|++++..+.
T Consensus        10 ~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~~~~~~   43 (96)
T cd05732          10 NQTAVELEQITLTCEA-EGDPIPEITWRRATRNFS   43 (96)
T ss_pred             ceeEecCCcEEEEEEE-eEcCCCcEEEEECCcccC
Confidence            4677899999999999 689999999999886554

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.43  E-value=1e-12  Score=77.56  Aligned_cols=67  Identities=24%  Similarity=0.530  Sum_probs=48.3

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      |+.+.|.|.+ .|.|.|.+.|++++.++....+...     ....|.|.++  .|.|.|+|.|.|..|.......
T Consensus         1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~~~~~~~-----~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~   67 (69)
T cd05739           1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTKEDEMPV-----GRNVLELTNI--YESANYTCVAISSLGMIEATAQ   67 (69)
T ss_pred             CCeEEEEEEe-eecCCCEEEEEECCEECCCccceec-----CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEE
Confidence            6789999999 7999999999999988755433221     1235666665  3678888888888776554443

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.43  E-value=2.7e-12  Score=81.73  Aligned_cols=33  Identities=21%  Similarity=0.433  Sum_probs=27.6

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      ..+..|+.++|.|.+ .|.|.|.+.|++++..+.
T Consensus        12 ~~~~~g~~v~l~C~~-~G~P~P~v~W~~~~~~~~   44 (97)
T cd05869          12 TAMELEEQITLTCEA-SGDPIPSITWRTSTRNIS   44 (97)
T ss_pred             eEEEcCCCEEEEEEe-eEeCCCEEEEEECCcccc
Confidence            345568999999999 699999999999887664

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.42  E-value=4.1e-12  Score=79.22  Aligned_cols=73  Identities=33%  Similarity=0.598  Sum_probs=50.1

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ....+.+|+.+.|.|.+..+.|.+.+.|++++..+.... +.....    ...|.|..+..+|.|.|+|.+.|..|..
T Consensus         4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   77 (86)
T cd05724           4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD----DGNLLIAEARKSDEGTYKCVATNMVGER   77 (86)
T ss_pred             ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc----CCEEEEeECCcccCEEEEEEEEeccCce
Confidence            446778999999999975688999999999998876532 222211    2346666666666666666666665543

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.42  E-value=4.3e-12  Score=79.70  Aligned_cols=73  Identities=26%  Similarity=0.543  Sum_probs=47.7

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeE-CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ....+..|+.+.|.|.+ .|.|. .+.|++ ++..+....+......+.....|.|.++..+|.|.|+|.|.|..|
T Consensus         8 ~~~~v~~G~~~~l~C~~-~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g   81 (92)
T cd04977           8 SQGEISVGESKFFLCQV-IGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG   81 (92)
T ss_pred             CcEEECCCCeEEEEEEe-EeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence            34678899999999999 57764 999997 565554433333333333345666666666666666666666543

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.42  E-value=3.2e-12  Score=79.71  Aligned_cols=74  Identities=22%  Similarity=0.493  Sum_probs=50.6

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeE-CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ....+.+|+.+.|.|.+ .|.|. .+.|++ ++..+....+...... .....|.|..+..+|+|.|+|.|.|..|..
T Consensus         8 ~~~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~~~~r~~~~~~-g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           8 SKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIVSSQRVVVQKE-GVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             cceEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEecCCCCEEEEeC-CCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            34678899999999999 68887 899998 5666655545444322 223456677776666666666666666543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.41  E-value=2.4e-12  Score=78.00  Aligned_cols=73  Identities=19%  Similarity=0.411  Sum_probs=52.2

Q ss_pred             EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeee
Q psy14540         20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSA   92 (291)
Q Consensus        20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   92 (291)
                      +.|.|.+.+ .|.+.+.|+++++.+..................+.|.|.+++..|+|.|+|.+.+..|....++
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~   74 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA   74 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence            479999875 6778999999998876221111111112223447799999999999999999999888766554

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.41  E-value=3.2e-12  Score=77.50  Aligned_cols=63  Identities=25%  Similarity=0.566  Sum_probs=42.5

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCc-eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ++|.|.+ .|.|.|.+.|+|+|.++..... .....   ....|.|..+..+|.|.|.|.+.|..|..
T Consensus         1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   64 (77)
T cd05760           1 VTLRCHI-DGHPRPTYQWFRDGTPLSDGQGNYSVSS---KERTLTLRSAGPDDSGLYYCCAHNAFGSV   64 (77)
T ss_pred             CEEEEEe-eecCCCcEEEEECCEECCCCCccEEEeC---CCCEEEEeeCCcccCEEEEEEEEeCCCeE
Confidence            5799999 7999999999999998755432 22211   12356666666666666666666666543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.40  E-value=1.4e-12  Score=80.30  Aligned_cols=76  Identities=29%  Similarity=0.496  Sum_probs=55.2

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCee---c--CCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYP---L--AGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS   91 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~---~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   91 (291)
                      |+.+.|.|.+.+.|.+.+.|+|++..   +  ...... ...   .......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   76 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR-GNV---VVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN   76 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCccc-CCE---EEccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence            78999999999999999999997421   1  111000 000   01122579999999999999999999999988877


Q ss_pred             eeEEE
Q psy14540         92 ADMRV   96 (291)
Q Consensus        92 ~~l~v   96 (291)
                      +.|.|
T Consensus        77 ~~l~v   81 (81)
T cd05765          77 FPLSV   81 (81)
T ss_pred             EEEeC
Confidence            77654

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.40  E-value=1e-11  Score=79.90  Aligned_cols=38  Identities=39%  Similarity=0.776  Sum_probs=33.0

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  150 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~  150 (291)
                      .+....+.+|+.+.|.|.+ .|.|.|.+.|+++|..+..
T Consensus         7 ~p~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~   44 (100)
T cd07693           7 HPSDLIVSKGDPATLNCKA-EGRPTPTIQWLKNGQPLET   44 (100)
T ss_pred             cCceeEEcCCCeEEEEeeC-CcCCCCEEEEEECCEECcc
Confidence            3455788899999999999 7899999999999988765

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.40  E-value=3.9e-12  Score=76.73  Aligned_cols=72  Identities=29%  Similarity=0.669  Sum_probs=55.6

Q ss_pred             CCcEEEEEEecCCCCCeeEEEE-CCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540         17 GPPVSLKCIATGNPTPHISWKL-DGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM   94 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l   94 (291)
                      |+.+.|.|.+.+.|.+.+.|++ ++..+... +...     .. .  .+|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-----~~-~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV-----YD-N--GTLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE-----ec-C--CEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            7899999999999999999997 56655422 1111     11 1  358899999999999999999999988777766


Q ss_pred             EE
Q psy14540         95 RV   96 (291)
Q Consensus        95 ~v   96 (291)
                      .|
T Consensus        73 ~v   74 (74)
T cd05764          73 HI   74 (74)
T ss_pred             EC
Confidence            54

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.40  E-value=2.1e-12  Score=76.21  Aligned_cols=69  Identities=23%  Similarity=0.308  Sum_probs=51.4

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR   95 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~   95 (291)
                      +.|.|.+.|.|.|.+.|+|++.++.......   . ..+   .+|.|.+++.+|+|.|+|.+.+..........++
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~---~-~~~---~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRY---H-VDG---YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEE---E-eCC---CEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            4689999999999999999999876432111   1 111   3599999999999999999998765555444443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.40  E-value=3.2e-12  Score=77.43  Aligned_cols=72  Identities=29%  Similarity=0.440  Sum_probs=53.7

Q ss_pred             EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeee
Q psy14540         20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSA   92 (291)
Q Consensus        20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   92 (291)
                      +.|.|.+.+ .|.+.+.|++++..+....... ............|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   73 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPR-NIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA   73 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcc-eEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence            479999999 8999999999998886321110 00112223457799999999999999999999988766554

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.40  E-value=1.4e-12  Score=78.79  Aligned_cols=23  Identities=35%  Similarity=0.771  Sum_probs=20.0

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEe
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      +.|.|.+ .|.|.|.++|++++..
T Consensus         1 a~l~C~~-~G~P~P~v~W~k~~~~   23 (75)
T cd05763           1 ARLECAA-TGHPTPQIAWQKDGGT   23 (75)
T ss_pred             CEeEeec-ccccCCEEEEEeCCCc
Confidence            3689998 7999999999998864

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.40  E-value=1.3e-12  Score=89.20  Aligned_cols=77  Identities=18%  Similarity=0.281  Sum_probs=63.9

Q ss_pred             EEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEECCEE
Q psy14540        204 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYKNGLA  280 (291)
Q Consensus       204 ~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~  280 (291)
                      +|.|.+++..|+|.|.|.+.+..+.....+.|.|..+|.+...+... ...|+.++|+|.+.+.+|+ +.|.|+++|..
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            68899999999999999999887888888999999999887665544 4478999999999444565 59999999854

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.39  E-value=1.4e-12  Score=77.73  Aligned_cols=68  Identities=19%  Similarity=0.435  Sum_probs=47.4

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      +.|.|.+ .|.|.|.+.|++++..+..... ...   .....|.|..+..+|.|.|+|.|.|..|.....+.+
T Consensus         1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~~~~-~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05876           1 LVLECIA-EGLPTPEVHWDRIDGPLSPNRT-KKL---NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV   68 (71)
T ss_pred             CEEEEEe-eEecCCeEEEEECCcCCCCCce-eEE---cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence            4689999 7999999999999887654321 111   123467777777777777777777777765555444

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.39  E-value=2.1e-12  Score=79.76  Aligned_cols=74  Identities=28%  Similarity=0.494  Sum_probs=48.6

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      +....|+.+.|.|.+ .+.|.+.+.|++++..+........   ......|.|.++..+|+|.|+|.+.|..|.....
T Consensus         4 ~~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   77 (82)
T cd05856           4 IARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEIGES---RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT   77 (82)
T ss_pred             eeccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCcccee---cCceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence            345679999999998 6889999999999987754332211   1123456666666666666666666666544433

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.39  E-value=9.7e-12  Score=80.64  Aligned_cols=85  Identities=26%  Similarity=0.427  Sum_probs=58.1

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  198 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~  198 (291)
                      .|..+.|.|.+ .|.|.+.+.|++++..+.... ++.......               +                     
T Consensus        22 ~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~---------------~---------------------   64 (109)
T cd05773          22 GSSDANLVCQA-QGVPRVQFRWAKNGVPLDLGNPRYEETTEHT---------------G---------------------   64 (109)
T ss_pred             CCCEEEEEEEC-cccCCCEEEEEECCEECCCCCCeEEEEeecc---------------C---------------------
Confidence            56889999999 689999999999998875332 221110000               0                     


Q ss_pred             eccceEEEEeeee-cCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        199 NEYTSSLSIATLS-TGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       199 ~~~~~~l~i~~~~-~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                      ....+.|.|.++. .+|.|.|+|.|.|..|.....+.|.+..+|
T Consensus        65 ~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          65 TVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             ccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            0012457777776 478888888888888888888888777665

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.38  E-value=2.8e-12  Score=78.70  Aligned_cols=70  Identities=20%  Similarity=0.367  Sum_probs=53.7

Q ss_pred             eeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      ++.+....|.+|++++|.|.+.. .+...+.|+|++..+...            ...+.|.|.+++.+|+|.|+|.+.+.
T Consensus         3 ~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------------~~~~~l~I~~~~~~dsG~Y~C~~~~~   70 (83)
T cd05753           3 LLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------------HSNSNLSIPQATLSDSGSYHCSGIIG   70 (83)
T ss_pred             EEECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------------CCCceEEECccCHHHCEEEEEEEEeC
Confidence            34455557999999999999854 556789999999765411            11245899999999999999999977


Q ss_pred             CCc
Q psy14540         85 VGS   87 (291)
Q Consensus        85 ~~~   87 (291)
                      .+.
T Consensus        71 ~~~   73 (83)
T cd05753          71 SYD   73 (83)
T ss_pred             Cce
Confidence            653

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.38  E-value=3.2e-12  Score=77.42  Aligned_cols=69  Identities=26%  Similarity=0.441  Sum_probs=44.4

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEE--eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITI--RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +.|.|.+..+.|.+.+.|++++.++........  .........|.|..+..+|.|.|+|.|.|..|....
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   71 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV   71 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence            469999943399999999999998865443221  111222455666666666666666666666665443

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.38  E-value=1.2e-11  Score=78.81  Aligned_cols=81  Identities=22%  Similarity=0.372  Sum_probs=51.2

Q ss_pred             cceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCC--CceEEeccC---CceEEEEEeeCCC-CCceeEEEEEEec
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSD--AEITIRSSG---EYTSSLSIATLST-GHSGNYTCVASNT  186 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~--~~~~~~~~~---~~~~~l~i~~~~~-~d~g~y~C~~~~~  186 (291)
                      ....+.+|+.+.|.|.+ .|.|.| .+.|++++..+...  .++.+....   .....|.|..+.. +|.|.|+|.|.|.
T Consensus         9 ~~~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758           9 ATQYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             CcEEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence            44667899999999999 688988 69999999887653  233332211   1123455555555 3356666666665


Q ss_pred             CCCCCCceE
Q psy14540        187 VASDNHSSN  195 (291)
Q Consensus       187 ~~~~~~~~~  195 (291)
                      .|.....+.
T Consensus        88 ~G~~~~~~~   96 (98)
T cd05758          88 FGSGTAIIS   96 (98)
T ss_pred             CCcccEEEE
Confidence            555444433

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.38  E-value=4.5e-12  Score=79.25  Aligned_cols=69  Identities=20%  Similarity=0.464  Sum_probs=43.7

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ....+.+|+.++|.|.+ .|. .|.+.|++++..+... +.....   ....|.|..+..+|.|.|.|.|.|..|
T Consensus        11 ~~~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G   79 (91)
T cd05740          11 GNQPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVPP-RLQLSN---DNRTLTFNNVTRSDTGHYQCEASNEVS   79 (91)
T ss_pred             CccccccCCcEEEEEEe-CCC-CCEEEEEECCEECCCC-CEEEeC---CCCEEEECcCChhhCEEEEEEEEcCCC
Confidence            34678899999999999 677 8999999999876432 222111   112355555555555555555444444

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.38  E-value=5.8e-12  Score=78.96  Aligned_cols=85  Identities=28%  Similarity=0.459  Sum_probs=48.8

Q ss_pred             CCceEEEEEeeCCCCCceeEEeEC----CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKN----GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      |+.+.|.|.+ .+.|.|.+.|+++    +..+..........         +..     .+...                
T Consensus         1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~---------~~~-----~~~~~----------------   49 (90)
T cd05858           1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTV---------LKT-----AGVNT----------------   49 (90)
T ss_pred             CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEE---------ecc-----CCcee----------------
Confidence            6789999999 6999999999984    33332211111000         000     00000                


Q ss_pred             EEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                       .......|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus        50 -~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   89 (90)
T cd05858          50 -TDKEMEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV   89 (90)
T ss_pred             -cCCceeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence             0011245677777777777777777777777666666665

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.38  E-value=2.3e-12  Score=76.54  Aligned_cols=63  Identities=33%  Similarity=0.513  Sum_probs=39.6

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ++|.|.+ .|.|.|.+.|++++..+... +....    ....|.|.++..+|.|.|+|.+.|..|....
T Consensus         1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~-~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   63 (69)
T cd05725           1 VEFQCEV-GGDPVPTVLWRKEDGELPKG-RAEIL----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEA   63 (69)
T ss_pred             CEEEEEC-ccCCCCEEEEEECCccCCCC-cEEEe----eCCEEEECcCChhHCEEEEEEEEcCCCcEEE
Confidence            4799998 79999999999998766432 22221    1224556666666666666665555554433

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.37  E-value=9.1e-12  Score=78.54  Aligned_cols=72  Identities=21%  Similarity=0.324  Sum_probs=53.0

Q ss_pred             cceeeeecCCcEEEEEEecCCCCCeeEEEECCee---------cCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP---------LAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +.++.+.+|++++|.|.+.+.|.+.+.|++.+..         ....++..    .......++|.|.+++.+|+|.|+|
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~----~~~~~~~~sL~I~~v~~~DsG~Y~C   79 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL----VRASWHELSISISDVSLSDEGQYTC   79 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEE----EECCCCcEEEEECcCCcccCEEEEE
Confidence            5668899999999999999888899999874321         11222211    1112344779999999999999999


Q ss_pred             EEeCC
Q psy14540         80 TATNR   84 (291)
Q Consensus        80 ~~~~~   84 (291)
                      .+...
T Consensus        80 ~~~t~   84 (95)
T cd07701          80 SLFTM   84 (95)
T ss_pred             EeEee
Confidence            98853

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.36  E-value=1.2e-11  Score=77.50  Aligned_cols=86  Identities=20%  Similarity=0.319  Sum_probs=60.5

Q ss_pred             ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC-C
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV-G   86 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-~   86 (291)
                      .|..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+.............    ...|.|.+++.+|+|.|+|.+.+.. +
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~~~~~~   76 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT----EDGLLIRSVSPADAGVYTCQSVEHGFK   76 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc----CCCEEEccCCHHHCEEEEEEEecCccc
Confidence            456678999999999999876 778999999988765321000011111    1238899999999999999998544 4


Q ss_pred             ceeeeeeEEEEc
Q psy14540         87 SQTHSADMRVYD   98 (291)
Q Consensus        87 ~~~~~~~l~v~~   98 (291)
                      ....+..|.|.+
T Consensus        77 ~~~~~~~l~V~~   88 (89)
T cd04979          77 QTLATYSLNVLE   88 (89)
T ss_pred             eeEeEEEEEEec
Confidence            456666676653

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.36  E-value=7.7e-12  Score=75.43  Aligned_cols=71  Identities=28%  Similarity=0.611  Sum_probs=49.6

Q ss_pred             CCceEEEEEeeCCCCCceeEEeE-CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      |+.+.|.|.+ .|.|.|.+.|++ ++..+....+.....    ...|.|..+..+|.|.|+|.|.|..|.....+.+
T Consensus         1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKA-RGDPEPAIHWISPDGKLISNSSRTLVYD----NGTLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEc-cCcCCCEEEEEeCCCEEecCCCeEEEec----CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            6789999999 688999999997 566654443332221    2357777777788888888887777765544443

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.36  E-value=8.5e-12  Score=75.64  Aligned_cols=73  Identities=33%  Similarity=0.551  Sum_probs=56.7

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCCe-eEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGDR-FVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~   97 (291)
                      +.|.|.+.+.|.+.+.|+|++..+.... ....    .. .....|.|.+++.+|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~----~~-~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLT----LI-ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEE----Ee-CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            3689999999999999999998876321 1111    11 112468999999999999999999999998888888774

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.36  E-value=8.5e-12  Score=78.25  Aligned_cols=26  Identities=35%  Similarity=0.686  Sum_probs=22.9

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      |+.+.|.|.+ .+.|.|.+.|++++..
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~g~~   26 (90)
T cd05726           1 GRTVTFQCEA-TGNPQPAIFWQKEGSQ   26 (90)
T ss_pred             CCEEEEEEEC-CccCCCEEEEEeCCCc
Confidence            6789999998 7999999999998754

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.35  E-value=5.4e-12  Score=75.89  Aligned_cols=69  Identities=32%  Similarity=0.608  Sum_probs=52.7

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc-eeeeeeEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMR   95 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~l~   95 (291)
                      ++|.|.+.|.|.|.+.|++++..+..   .++..      ...  ..|.|.+++.+|+|.|+|.+.|..|. .+....|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~------~~~--g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~   72 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ------LRS--GALQIENSEESDQGKYECVATNSAGTRYSAPANLY   72 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE------cCC--cEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence            47999999999999999999987752   12211      111  34899999999999999999998887 35556555


Q ss_pred             E
Q psy14540         96 V   96 (291)
Q Consensus        96 v   96 (291)
                      |
T Consensus        73 v   73 (74)
T cd05738          73 V   73 (74)
T ss_pred             E
Confidence            4

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.35  E-value=8.8e-12  Score=78.59  Aligned_cols=67  Identities=28%  Similarity=0.538  Sum_probs=47.6

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCC-CCCceeEEEEEEecCCCC
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNYTCVASNTVASD  190 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~  190 (291)
                      +|+.++|.|.+ .|.|.|.+.|+++|..+...........   ...|.|..+. ..|.|.|+|.|.|..|..
T Consensus        18 ~g~~v~l~C~~-~G~P~P~i~W~k~g~~l~~~~~~~~~~~---~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~   85 (94)
T cd05848          18 DEKKVILNCEA-RGNPVPTYRWLRNGTEIDTESDYRYSLI---DGNLIISNPSEVKDSGRYQCLATNSIGSI   85 (94)
T ss_pred             CCCEEEEEEEe-eecCCCEEEEEECCeECccCCCceEEee---CCeEEEccCCccCcCEEEEEEEEcCCCeE
Confidence            57899999999 7999999999999998864432222111   2356666654 477777777777777654

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.35  E-value=3.6e-12  Score=75.26  Aligned_cols=60  Identities=25%  Similarity=0.319  Sum_probs=41.1

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      +.|.|.+ .|.|.|++.|++++.++....... ...   ...|.|.++..+|+|.|+|.+.|...
T Consensus         1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~~~~~-~~~---~~~L~I~~v~~~D~G~YtC~a~~~~~   60 (72)
T cd07702           1 YRLTPKV-KAFPAPEVIWLKDGLPAAEKCSRY-HVD---GYSLVIKDVTEEDAGIYTILLGIKQY   60 (72)
T ss_pred             CeEEeeE-EEcCCCeEEEEECCEECCCCCcEE-EeC---CCEEEECcCCHHHCEEEEEEEEcccc
Confidence            4689999 799999999999999886542211 111   22567777777777777776666543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.35  E-value=7.8e-12  Score=77.58  Aligned_cols=79  Identities=27%  Similarity=0.492  Sum_probs=61.1

Q ss_pred             eeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      ...|....+.+|++++|.|.+.+ .+.+.+.|++++..+.....          .....|.|.+++.+|+|.|+|.+.|.
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~----------~~~~~L~I~~v~~~DsG~Y~C~a~n~   74 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM----------DFNGILTIRNVQLSDAGTYVCTGSNM   74 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCccc----------ccCCEEEECCCCHHHCEEEEEEEecc
Confidence            34566778999999999999875 67889999998865442110          01145999999999999999999998


Q ss_pred             CCceeeeeeE
Q psy14540         85 VGSQTHSADM   94 (291)
Q Consensus        85 ~~~~~~~~~l   94 (291)
                      .|.....+.|
T Consensus        75 ~g~~~~~~~l   84 (85)
T cd05754          75 LDTDEATATL   84 (85)
T ss_pred             CCeEeEEEEE
Confidence            8877766544

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.34  E-value=2.4e-11  Score=74.47  Aligned_cols=69  Identities=26%  Similarity=0.483  Sum_probs=53.5

Q ss_pred             ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      .|.+..+..|+++.|.|.+.+ +.+.+.|++||..+.....   ......    ..|.|.+++.+|+|.|+|.+...
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~---r~~~~~----~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESA---KYLLYR----DGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCc---eEEEEC----CcEEEeCCCHHHCEEEEEEEEec
Confidence            577889999999999999764 5778999999999873311   111111    23889999999999999999754

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.34  E-value=1.2e-11  Score=77.40  Aligned_cols=24  Identities=33%  Similarity=0.614  Sum_probs=21.6

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECC
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~  145 (291)
                      |+.++|.|.+ .|.|.|.++|+|++
T Consensus         1 G~~v~l~C~v-~g~P~P~i~W~k~~   24 (90)
T cd04974           1 GSDVEFHCKV-YSDAQPHIQWLKHV   24 (90)
T ss_pred             CCcEEEEEEE-eCCCCCeEEEEEec
Confidence            6789999999 79999999999964

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.34  E-value=1.4e-11  Score=77.50  Aligned_cols=79  Identities=28%  Similarity=0.466  Sum_probs=58.8

Q ss_pred             CcceeecceeeeecC---CcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecC-CCCCeEE
Q psy14540          3 PQLIYKFIQQTLQPG---PPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVR-VEDSGIY   77 (291)
Q Consensus         3 p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y   77 (291)
                      |.|+.+|.+..+.+|   +.+.|.|.+.+.|.+.++|++++..+... ....   ....    ..|.|.++. ..|+|.|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~---~~~~----~~L~i~~~~~~~d~G~Y   74 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRY---SLVG----GNLVISNPSKAKDAGRY   74 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCE---EEEC----CEEEEecCCccCCCEEE
Confidence            778888888766554   57999999998999999999999887421 1111   1111    247888876 4899999


Q ss_pred             EEEEeCCCCce
Q psy14540         78 QCTATNRVGSQ   88 (291)
Q Consensus        78 ~C~~~~~~~~~   88 (291)
                      +|.+.|..|..
T Consensus        75 ~C~a~N~~G~~   85 (91)
T cd04967          75 QCLASNIVGTV   85 (91)
T ss_pred             EEEEEcCCCEE
Confidence            99999888754

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.34  E-value=3.7e-11  Score=74.76  Aligned_cols=80  Identities=34%  Similarity=0.549  Sum_probs=61.1

Q ss_pred             eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceee
Q psy14540         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTH   90 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   90 (291)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+... .....    ........|.|.+++.+|+|.|.|.+.+..|....
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~   79 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGY----KVRKKKWTLILESVVPSDSGKYTCIVENKYGSINH   79 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEE----EccCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence            35678999999999998888899999999877622 11110    11123356999999999999999999988887777


Q ss_pred             eeeEE
Q psy14540         91 SADMR   95 (291)
Q Consensus        91 ~~~l~   95 (291)
                      ++.|.
T Consensus        80 ~~~l~   84 (85)
T cd05729          80 TYKVD   84 (85)
T ss_pred             EEEEe
Confidence            66654

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.34  E-value=1.2e-11  Score=76.73  Aligned_cols=83  Identities=33%  Similarity=0.501  Sum_probs=55.0

Q ss_pred             CceEEEEEeeCCCCCc--eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540        122 DRAGVQCLVTKGDPPL--TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  199 (291)
Q Consensus       122 ~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~  199 (291)
                      +.+.|.|.+ .+.|.+  .+.|+++|..+.......         ......                           ..
T Consensus         1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~---------~~~~~~---------------------------~~   43 (85)
T cd04970           1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGG---------HYRRVG---------------------------GK   43 (85)
T ss_pred             CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCc---------cEEEEe---------------------------cc
Confidence            468999999 687866  679999998875321100         000000                           00


Q ss_pred             ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                      ...+.|.|.+++..|+|.|+|.|.|..+..+.+..|.|..||
T Consensus        44 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP   85 (85)
T cd04970          44 DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP   85 (85)
T ss_pred             cccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence            013457777788888888888888888777888888887766

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.34  E-value=1e-11  Score=75.50  Aligned_cols=68  Identities=21%  Similarity=0.439  Sum_probs=49.3

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      +....+.+|+.+.|.|.+ .|.|.| .+.|+++|.++....       ......|.+..+  .|.|.|.|.|.|..|..
T Consensus         5 P~~~~v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~~~-------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~   73 (81)
T cd05749           5 PEDLSVTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGDPP-------APSPSVLNVPGL--NETSKFSCEAHNAKGVT   73 (81)
T ss_pred             CCceEEcCCCCEEEEEEe-eeecCCeEEEEEECCEECCCCC-------CCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence            455788999999999999 799999 799999999885410       011235666554  45677777777777643

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.33  E-value=1.1e-11  Score=75.07  Aligned_cols=69  Identities=25%  Similarity=0.437  Sum_probs=41.9

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCc--eE-EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAE--IT-IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~--~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +.|.|.+..+.|.+.+.|++++..+.....  .. ..........|.|.++...|+|.|+|.+.|..|....
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~   72 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSV   72 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeE
Confidence            479999855678899999999988754321  11 1111122345666666666666666666666554443

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.32  E-value=1.4e-11  Score=74.01  Aligned_cols=61  Identities=30%  Similarity=0.620  Sum_probs=43.8

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccC--CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILS--DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ++|.|.+ .|.|.|.+.|++++.++..  ..+....  .  ...|.|..+..+|.|.|+|.|.|..|.
T Consensus         1 a~l~C~~-~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~--~g~L~i~~~~~~D~G~Y~C~a~N~~G~   63 (74)
T cd05738           1 ATMLCAA-SGNPDPEITWFKDFLPVDTTSNGRIKQL--R--SGALQIENSEESDQGKYECVATNSAGT   63 (74)
T ss_pred             CEEEEEE-eEecCCEEEEEECCEECccCCCCCEEEc--C--CcEEEECCCChhhCEEEEEEEECCCCc
Confidence            4799998 7999999999999988763  2233222  1  235777777777777777777777665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.32  E-value=3.9e-11  Score=74.63  Aligned_cols=73  Identities=29%  Similarity=0.541  Sum_probs=44.5

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+..|+.+.|.|.+ .+.|.+.+.|++++..+.................|.|..+..+|.|.|.|.+.|..|.
T Consensus         4 ~~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~   76 (85)
T cd05729           4 HAVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS   76 (85)
T ss_pred             eEecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCce
Confidence            456689999999999 6889999999999887754432222111112234444455555555555555444443

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.31  E-value=1.5e-11  Score=74.24  Aligned_cols=62  Identities=21%  Similarity=0.451  Sum_probs=47.4

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      .+....+.+|+.++|.|.+ .+.|. ..+.|++|+..+...           ...|.|.++ .+|+|.|+|.+.|.
T Consensus         6 ~P~~~~v~~G~~V~L~C~~-~~~p~~~~~~W~kng~~l~~~-----------~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           6 DPPWTTIFQGEKVTLTCNG-FNSPEQNSTQWYHNGKLLETT-----------TNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCCCeEeeCCCCEEEEEeC-CCCCCCccEEEEECCEEeecc-----------CCeEEEeec-ccCCEEeEEECCCC
Confidence            3455778899999999998 56664 579999999877321           345777777 88888888888764

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.31  E-value=2.4e-11  Score=73.61  Aligned_cols=70  Identities=30%  Similarity=0.546  Sum_probs=39.8

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      +.|.|.+ .|.|.|.+.|++++..+........... .....|.|..+...|.|.|+|.+.|..|.....+.
T Consensus         1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   70 (76)
T cd05736           1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLI-ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISS   70 (76)
T ss_pred             CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEe-CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEE
Confidence            3689999 6899999999999988754432211111 11123445555555555555555554444443333

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.31  E-value=3.5e-11  Score=76.31  Aligned_cols=39  Identities=26%  Similarity=0.537  Sum_probs=32.5

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA  152 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~  152 (291)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+....
T Consensus         6 P~~~~~~~g~~v~l~C~v-~g~P~p~i~W~k~g~~l~~~~   44 (95)
T cd05722           6 PSDIVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVS   44 (95)
T ss_pred             CCCeEEcCCCCEEEeeec-ccCCCCEEEEEECCeECcccc
Confidence            344667789999999999 788999999999999886543

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.30  E-value=3e-11  Score=76.24  Aligned_cols=66  Identities=24%  Similarity=0.451  Sum_probs=43.5

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCC-CCCceeEEEEEEecCCCC
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNYTCVASNTVASD  190 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~  190 (291)
                      |+.++|.|.+ .|.|.+.++|+++|..+...........   ...|.|.++. ..|.|.|+|.|.|..|..
T Consensus        19 g~~v~l~C~a-~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~   85 (94)
T cd05850          19 EEKVTLGCRA-RASPPATYRWKMNGTEIKFAPESRYTLV---AGNLVINNPQKARDAGSYQCLAINRCGTV   85 (94)
T ss_pred             CCeEEEEeEc-eeCCCCEEEEEECCEECccCCCceEEEE---CCeEEEccCCccCcCEEEEEEEEcCcCcE
Confidence            5689999999 7999999999999998864322111111   2345555543 466666666666666643

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.30  E-value=8.5e-12  Score=74.67  Aligned_cols=68  Identities=29%  Similarity=0.604  Sum_probs=46.2

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      +.|.|.+ .|.|.|.+.|++++..+.... ....   .....|.|.++..+|.|.|+|.|.|..|.....+.+
T Consensus         1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~~-~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05731           1 LLLECIA-EGLPTPEISWIKIGGELPADR-TKFE---NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV   68 (71)
T ss_pred             CEEEEEe-eEecCCeEEEEECCeECCCCc-eeEe---cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence            4799999 799999999999988764322 1111   123467777777777777777777777655444443

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.29  E-value=1.7e-11  Score=74.28  Aligned_cols=64  Identities=28%  Similarity=0.576  Sum_probs=39.9

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCC----CCceeEEEEEEecCCC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST----GHSGNYTCVASNTVAS  189 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~  189 (291)
                      +.|.|.+ .|.|.|.++|++++..+.......+... ...+.|.|..+..    +|.|.|+|.|.|..|.
T Consensus         1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~~~-~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~   68 (77)
T cd05733           1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVTMK-PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGT   68 (77)
T ss_pred             CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEEEe-CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCc
Confidence            4789999 7999999999999988754322111111 1133455555432    4566666666666654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.29  E-value=2.1e-11  Score=76.05  Aligned_cols=75  Identities=19%  Similarity=0.301  Sum_probs=52.4

Q ss_pred             eeeecCCcEEEEEEecCCCCCeeEEEECCeec-C--CCeeEe----------ceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-A--GDRFVM----------GQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~-~--~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +.+.+|++++|+|.+.+.+.+.+.|+++++.. .  ......          .......+.+.+.|+|.+++.+|+|.|.
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            45789999999999998888899999766332 1  111100          0001112345688999999999999999


Q ss_pred             EEEeCCCC
Q psy14540         79 CTATNRVG   86 (291)
Q Consensus        79 C~~~~~~~   86 (291)
                      |.+.+..+
T Consensus        82 C~v~~~~~   89 (94)
T cd07690          82 CEVEDKKE   89 (94)
T ss_pred             EEECCccc
Confidence            99986543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.29  E-value=2e-11  Score=75.75  Aligned_cols=76  Identities=25%  Similarity=0.512  Sum_probs=50.7

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+....+.+|+.++|.|.+..+.|.+.+.|++++..+....    .   .....|.|..+..+|+|.|.|.+.|..|...
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~   79 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDE   79 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c---ccCCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence            34557788999999999985457889999999886543211    0   1123566666666666666666666665544


Q ss_pred             Cce
Q psy14540        192 HSS  194 (291)
Q Consensus       192 ~~~  194 (291)
                      ...
T Consensus        80 ~~~   82 (85)
T cd05754          80 ATA   82 (85)
T ss_pred             EEE
Confidence            433

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.29  E-value=2.9e-11  Score=75.44  Aligned_cols=77  Identities=26%  Similarity=0.308  Sum_probs=57.6

Q ss_pred             eeeeecCCcEEEEEEecC-----CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540         11 QQTLQPGPPVSLKCIATG-----NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV   85 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   85 (291)
                      .+.+.+|+++.|.|...+     .+.+.+.|+|++.++........        ....|.|.+++.+|+|.|+|.+.+..
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--------~~~~L~I~~v~~~DsG~YtC~~~n~~   75 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--------KGSKLLIQNVTEEDAGNYTCKLTFTH   75 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--------cCCEEEEeeCChhhCEEEEEEEEecC
Confidence            356889999999998754     25778999999998874432221        12469999999999999999999877


Q ss_pred             CceeeeeeEE
Q psy14540         86 GSQTHSADMR   95 (291)
Q Consensus        86 ~~~~~~~~l~   95 (291)
                      +.....+...
T Consensus        76 ~~~~~~~t~t   85 (92)
T cd05757          76 NGKQYNVTRT   85 (92)
T ss_pred             CCEEEEEEEE
Confidence            6654444333

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.28  E-value=1.3e-11  Score=77.56  Aligned_cols=72  Identities=21%  Similarity=0.300  Sum_probs=42.9

Q ss_pred             eeecCCCceEEEEEeeCC-----CCCceeEEeECCEeccCCC--ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        116 IKVHSGDRAGVQCLVTKG-----DPPLTISWLKNGLPILSDA--EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ..+.+|+.+.|.|.+ .+     .|.+.+.|||++..+....  ...+..   ....|.|..+..+|+|.|+|.+.|..|
T Consensus         9 ~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~---~~~~L~I~~~~~~DsG~Y~C~~~N~~g   84 (94)
T cd05756           9 SYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ---QKDLLWFLPAALEDSGLYTCVVRNSTY   84 (94)
T ss_pred             EEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeee---cCCeEEEccCCcccCeEEEEEEcCCCc
Confidence            456689999999998 45     6888999999986543211  111111   122455555555555555555555444


Q ss_pred             CCC
Q psy14540        189 SDN  191 (291)
Q Consensus       189 ~~~  191 (291)
                      ...
T Consensus        85 ~~~   87 (94)
T cd05756          85 CMK   87 (94)
T ss_pred             cEE
Confidence            433

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.28  E-value=1.3e-11  Score=75.99  Aligned_cols=24  Identities=42%  Similarity=0.844  Sum_probs=21.6

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECC
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~  145 (291)
                      |+.+.|.|.+ .|.|.|.+.|++++
T Consensus         1 G~~v~l~C~~-~g~P~p~v~W~k~~   24 (81)
T cd05765           1 GETASFHCDV-TGRPPPEITWEKQV   24 (81)
T ss_pred             CCcEEEEeec-cccCCCcEEEEecC
Confidence            6889999998 79999999999974

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.28  E-value=3.7e-11  Score=74.28  Aligned_cols=81  Identities=23%  Similarity=0.339  Sum_probs=57.4

Q ss_pred             CCcEEEEEEecCCC--CCeeEEEECCeecCCCeeEe--ceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeee
Q psy14540         17 GPPVSLKCIATGNP--TPHISWKLDGYPLAGDRFVM--GQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSA   92 (291)
Q Consensus        17 g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   92 (291)
                      |+++.|.|.+.+.+  ...+.|..+++.........  ...........+.|.|.+++..|+|.|+|.+.+..+.....+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            78999999998644  45789998776443111000  001111234568899999999999999999998888777788


Q ss_pred             eEEEE
Q psy14540         93 DMRVY   97 (291)
Q Consensus        93 ~l~v~   97 (291)
                      .|.|+
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            77775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.27  E-value=1.4e-11  Score=75.20  Aligned_cols=74  Identities=31%  Similarity=0.490  Sum_probs=49.0

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecC-CCeeE--eceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce-eeeeeEE
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLA-GDRFV--MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ-THSADMR   95 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~l~   95 (291)
                      ++|.|.+.+.|.|.+.|++++.... .....  .........  ..+|.|.+++.+|+|.|+|.+.|..|.. ++.+.|+
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS--NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEec--CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            5799999999999999999643221 10000  000001111  2469999999999999999999988865 4444443

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.27  E-value=6e-11  Score=74.47  Aligned_cols=64  Identities=23%  Similarity=0.414  Sum_probs=43.4

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCC-CCCceeEEEEEEecCCCC
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLS-TGHSGNYTCVASNTVASD  190 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~  190 (291)
                      |..+.|.|.+ .|.|.|.++|++++..+... .+....     ...|.|..+. ..|.|.|.|.|.|..|..
T Consensus        19 ~~~v~l~C~a-~G~P~P~i~W~k~~~~i~~~~~~~~~~-----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~   84 (93)
T cd05849          19 EGKVSVNCRA-RANPFPIYKWRKNNLDIDLTNDRYSMV-----GGNLVINNPDKYKDAGRYVCIVSNIYGKV   84 (93)
T ss_pred             CCeEEEeCcC-ccCCCCEEEEEECCEEccCCCCeEEEE-----CCEEEECcCCcCCCCEEEEEEEEeCcceE
Confidence            4579999999 79999999999999887532 222211     2346666553 466666666666666643

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.26  E-value=7.8e-11  Score=72.19  Aligned_cols=67  Identities=19%  Similarity=0.396  Sum_probs=50.4

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      ....+..|+++.|.|.+ . .+.+.+.|++||.++.... +..+.     ...|.|.+++.+|+|.|+|.+.+..
T Consensus         4 ~~~~v~~G~~v~L~C~~-~-~~~~~i~W~~ng~~i~~~~~r~~~~-----~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           4 RQRTFKLGNNAELKCSP-K-SNLARVVWKFDGKVLTPESAKYLLY-----RDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             ceEEEECCCCEEEEEEC-C-CCCCeEEEEECCEECCCCCceEEEE-----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence            45678899999999997 3 3678999999999987653 33222     2347888888888888888887653

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.25  E-value=1.4e-10  Score=73.50  Aligned_cols=81  Identities=22%  Similarity=0.333  Sum_probs=55.1

Q ss_pred             ceeeeecCCcEEEEEEecCCCCCeeEEEECCeec---------CCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---------AGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ..+.+.+|++++|.|.+.+.+.+.+.|++.+..+         ...++..    .......+.|.|.+++.+|+|.|+|.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~----~~~~~~~~~L~I~~v~~~DsG~Y~C~   80 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQL----VNFSANELSISISNVSLSDEGRYTCS   80 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEE----EcCCCCeeEEEEccCCcccCEEEEEE
Confidence            4567999999999999988777899998633221         1112111    11123446799999999999999999


Q ss_pred             EeCCCCceeeeeeEE
Q psy14540         81 ATNRVGSQTHSADMR   95 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~   95 (291)
                      +..... ....+.|+
T Consensus        81 ~~~~~~-~~~~~~~~   94 (95)
T cd05717          81 LYTMPV-QTAKATVT   94 (95)
T ss_pred             EecCCC-ceEEEEEE
Confidence            885442 34444443

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.24  E-value=7.1e-11  Score=71.40  Aligned_cols=62  Identities=27%  Similarity=0.545  Sum_probs=39.1

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccC--CCceEEeccCCceEEEEEeeCC----CCCceeEEEEEEecCCC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILS--DAEITIRSSGEYTSSLSIATLS----TGHSGNYTCVASNTVAS  189 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~C~~~~~~~~  189 (291)
                      +.|.|.+ .|.|.|.++|++++..+..  ..+.....   ....|.|..+.    .+|.|.|+|.|.|..|.
T Consensus         1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~~~---~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~   68 (77)
T cd05875           1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSMRR---RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGT   68 (77)
T ss_pred             CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEEeC---CCceEEEeccCCCCCCCCCEEEEEEEEeccce
Confidence            4689999 7999999999999987643  22222211   12345555442    23466666666666653

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.24  E-value=6.6e-11  Score=73.84  Aligned_cols=73  Identities=19%  Similarity=0.279  Sum_probs=50.6

Q ss_pred             eeecCCCceEEEEEeeCC----CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        116 IKVHSGDRAGVQCLVTKG----DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ..+.+|....|.|....+    +|.+.+.|++++.++........     ....|.|..+..+|+|.|+|.+.|..+...
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~   79 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ   79 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-----cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence            456789999999986433    36789999999998865443221     234577777777777777777777665544


Q ss_pred             Cc
Q psy14540        192 HS  193 (291)
Q Consensus       192 ~~  193 (291)
                      .+
T Consensus        80 ~~   81 (92)
T cd05757          80 YN   81 (92)
T ss_pred             EE
Confidence            43

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.23  E-value=3.6e-11  Score=73.87  Aligned_cols=79  Identities=34%  Similarity=0.667  Sum_probs=57.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...+  ..+.+|+.+.|.|.+.+.|...+.|++++..+....           +.   +.+.+++.+|.|.|+|.+
T Consensus         1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-----------~~---~~~~~~~~~~~g~y~C~~   64 (80)
T PF13895_consen    1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-----------NG---LFIPNVSPEDSGNYTCRA   64 (80)
T ss_dssp             --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-----------SE---EEESSEEGGGTEEEEEEE
T ss_pred             CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-----------ee---eeeeeeccccCEEEEEEE
Confidence            47666555  569999999999999988888999999887655110           00   557888999999999999


Q ss_pred             eCCCC-ceeeeeeEEE
Q psy14540         82 TNRVG-SQTHSADMRV   96 (291)
Q Consensus        82 ~~~~~-~~~~~~~l~v   96 (291)
                      .+..+ ..+..+.|.|
T Consensus        65 ~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   65 SNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCCeEeeeEEeeC
Confidence            87443 3444555443

...

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.23  E-value=6.5e-11  Score=71.55  Aligned_cols=64  Identities=30%  Similarity=0.533  Sum_probs=38.1

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCC----CCceeEEEEEEecCCC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST----GHSGNYTCVASNTVAS  189 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~  189 (291)
                      +.|.|.+ .|.|.|+++|++++.++........... ...+.|.|..+..    .|.|.|+|.|.|..|.
T Consensus         1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~   68 (77)
T cd05874           1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMK-PNTGTLVINIMNGEKAEAYEGVYQCTARNERGA   68 (77)
T ss_pred             CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEe-CCCceEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence            4799999 7999999999999988743222111111 1123455544432    2456666666665554

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>PHA03376 BARF1; Provisional

Probab=99.23  E-value=4.7e-10  Score=76.48  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=75.1

Q ss_pred             ceeeeecCCcEEEEEEecC---CCCCeeEEEECCe----ec-C-CC------eeEec-eEEeeccceEEEEEEeecCCCC
Q psy14540         10 IQQTLQPGPPVSLKCIATG---NPTPHISWKLDGY----PL-A-GD------RFVMG-QYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~----~~-~-~~------~~~~~-~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      .++++..|+.+.|+|....   .....|.|+|.+.    .+ . ..      .+... ......+.+..+|.|.+++.+|
T Consensus        19 ~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSD   98 (221)
T PHA03376         19 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH   98 (221)
T ss_pred             cchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecC
Confidence            3567889999999999862   3456799999432    11 1 10      11111 1111122366889999999999


Q ss_pred             CeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCE
Q psy14540         74 SGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL  146 (291)
Q Consensus        74 ~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~  146 (291)
                      .|.|+|.+........+.--|.+..+-..     .. .. .......-+...+.|.+ +|+|.|.+.|.-+..
T Consensus        99 dGtY~C~fQkge~~~~k~ehLt~V~~~~L-----sv-~a-~~~dFp~~~~~~i~C~s-ggfP~P~~~Wle~~~  163 (221)
T PHA03376         99 DGNYLCRMKLGETEVTKQEHLSVVKPLTL-----SV-HS-ERSQFPDFSVLTVTCTV-NAFPHPHVQWLMPEG  163 (221)
T ss_pred             CceEEEEEEcCCCceeeeeeeeeeecceE-----EE-Ee-ccccCCCCCeeEEEEec-CCcCCchheeccccC
Confidence            99999999854433333222322221100     00 00 00000013456899995 999999999987543

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.23  E-value=1.9e-10  Score=72.55  Aligned_cols=30  Identities=20%  Similarity=0.515  Sum_probs=26.0

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      ..+.+.+|+.+.|.|.+ .+.|.+.+.|++.
T Consensus         5 ~~v~v~eG~~v~L~C~~-~~~p~~~v~W~~~   34 (95)
T cd07701           5 QNVTVVEGGTANLTCRV-DQNDNTSLQWSNP   34 (95)
T ss_pred             ceEEEecCCcEEEEEEE-ecCCceEEEEeCC
Confidence            45788899999999999 6889999999863

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.23  E-value=9.2e-11  Score=71.99  Aligned_cols=64  Identities=22%  Similarity=0.334  Sum_probs=42.1

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ..+.+|+.++|.|.+..+.+.+.+.|++++..+...         .....|.|..+..+|+|.|+|.+.+..+
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~---------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~   72 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS---------HSNSNLSIPQATLSDSGSYHCSGIIGSY   72 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc---------CCCceEEECccCHHHCEEEEEEEEeCCc
Confidence            468899999999998555677889999998765311         1123455555555555555555555443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.22  E-value=6e-11  Score=73.38  Aligned_cols=81  Identities=22%  Similarity=0.393  Sum_probs=48.9

Q ss_pred             CCceEEEEEeeCCC--CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540        121 GDRAGVQCLVTKGD--PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  198 (291)
Q Consensus       121 g~~~~l~C~~~~~~--p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~  198 (291)
                      |+.+.|.|.+ .+.  |.+.+.|++++..+.........            .....+                       
T Consensus         1 Ge~~~L~C~~-~g~~~~~~~i~W~~~~~~~~~~~~~~~~------------~~~~~~-----------------------   44 (84)
T cd05742           1 GETLVLNCTV-LTELNEGVDFQWTYPGKKRGRGKSMVTR------------QSLSEA-----------------------   44 (84)
T ss_pred             CCeEEEEEEE-EeCCCccEEEEEecCCcccCCceEeecc------------cccccc-----------------------
Confidence            6889999999 577  88999999887654322110000            000000                       


Q ss_pred             eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        199 NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       199 ~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                      ....+.|.|.++...|+|.|+|.|.|..+..+.+..|.|
T Consensus        45 ~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742          45 TELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             eEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            001345667777777777777777777766666666655

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.21  E-value=9.4e-11  Score=71.03  Aligned_cols=64  Identities=28%  Similarity=0.521  Sum_probs=46.1

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCC----CCCeEEEEEEeCCCCce
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRV----EDSGIYQCTATNRVGSQ   88 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~   88 (291)
                      ++|.|.+.|.|.|.++|+|++..+... ....   ....  ....|.|.++..    +|+|.|+|.+.|..|..
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~---~~~~--~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~   69 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRV---TMKP--DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA   69 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCE---EEeC--CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence            579999999999999999999887521 1111   0111  124577887754    68999999999988864

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.20  E-value=3.3e-10  Score=67.88  Aligned_cols=67  Identities=12%  Similarity=0.305  Sum_probs=47.7

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccce
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTS  203 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~  203 (291)
                      ++|+|....++|++.++||+++.++.....                  ...+.+.|+                    ..+
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~------------------~~~~~~~~t--------------------~~s   43 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVIS------------------QQENGKTVS--------------------VSN   43 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcc------------------cccCCceEE--------------------EEE
Confidence            689999989999999999999999854211                  001122222                    135


Q ss_pred             EEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540        204 SLSIATLSTGHSGNYTCVASNTVAS  228 (291)
Q Consensus       204 ~l~i~~~~~~~~g~y~C~~~~~~~~  228 (291)
                      +|.|.....+|++.|+|+|.|..+.
T Consensus        44 ~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885          44 TIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeeeccCCcEEEEEEEChhhC
Confidence            6778888888888888888887743

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.20  E-value=3.4e-10  Score=70.63  Aligned_cols=83  Identities=14%  Similarity=0.280  Sum_probs=54.9

Q ss_pred             eeeeecCCcEEEEEEecCCCCCeeEEEECCe--ecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe-CCCCc
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGY--PLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT-NRVGS   87 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~-~~~~~   87 (291)
                      .+.+.+|+++.|.|... .|.+.+.|++.+.  ..... .........   ....|.|.+++.+|+|.|+|.+. +..+.
T Consensus         5 ~~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~~-~~~~~r~~~---~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~   79 (91)
T cd05871           5 VVYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKEE-VKTEERLIH---TERGLLLRSLQRSDAGVYTCTAVEHSFSQ   79 (91)
T ss_pred             EEEEecCCcEEEEEECC-CCCceEEEEEECCCCCcccc-ccccccEEE---ecCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence            35688999999999964 7888999998432  21110 000001111   11449999999999999999997 45555


Q ss_pred             eeeeeeEEEEc
Q psy14540         88 QTHSADMRVYD   98 (291)
Q Consensus        88 ~~~~~~l~v~~   98 (291)
                      ....+.|.|..
T Consensus        80 ~~~~~~l~v~~   90 (91)
T cd05871          80 TLAKYTLHVIE   90 (91)
T ss_pred             EEEEEEEEEec
Confidence            55666777653

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.19  E-value=1.5e-10  Score=71.92  Aligned_cols=71  Identities=27%  Similarity=0.462  Sum_probs=50.5

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEecc--CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL--SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ...+.+|+.+.|.|....+.|.+.+.|++++.++.  .+.+.....   ..+.|.+.++..+|.|.|.|.|.|...
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~---~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ---TNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC---CCCcEEEeecCHhhCceeEEEEEeccc
Confidence            36688999999999988899999999999986542  222222221   234677777777777777777777554

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>smart00410 IG_like Immunoglobulin like

Probab=99.18  E-value=9.5e-10  Score=68.33  Aligned_cols=82  Identities=37%  Similarity=0.650  Sum_probs=61.3

Q ss_pred             ceeeeecCCcEEEEEEecCCCCCeeEEEEC-CeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      ....+..|+++.|.|.+.+.+.+.+.|+++ +..+. .......     .......|.|.+++..|+|.|.|.+.+..+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVS-----RSGSNSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEE-----EcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            346788999999999999877889999998 77665 3333221     1222567999999999999999999976666


Q ss_pred             eeeeeeEEE
Q psy14540         88 QTHSADMRV   96 (291)
Q Consensus        88 ~~~~~~l~v   96 (291)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00410       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            555555544

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.18  E-value=9.5e-10  Score=68.33  Aligned_cols=82  Identities=37%  Similarity=0.650  Sum_probs=61.3

Q ss_pred             ceeeeecCCcEEEEEEecCCCCCeeEEEEC-CeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      ....+..|+++.|.|.+.+.+.+.+.|+++ +..+. .......     .......|.|.+++..|+|.|.|.+.+..+.
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVS-----RSGSNSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEE-----EcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            346788999999999999877889999998 77665 3333221     1222567999999999999999999976666


Q ss_pred             eeeeeeEEE
Q psy14540         88 QTHSADMRV   96 (291)
Q Consensus        88 ~~~~~~l~v   96 (291)
                      ....+.|.|
T Consensus        77 ~~~~~~l~V   85 (86)
T smart00409       77 ASSTTTLTV   85 (86)
T ss_pred             EEEEEEEEE
Confidence            555555544

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.18  E-value=5.6e-10  Score=70.12  Aligned_cols=33  Identities=18%  Similarity=0.365  Sum_probs=28.1

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|++++..
T Consensus         5 ~~~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~   37 (95)
T cd05882           5 QDETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQ   37 (95)
T ss_pred             ccEEEecCCcEEEEEEE-eCCCCCeEEEeccCcc
Confidence            34678899999999999 6888999999997754

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.18  E-value=1.9e-10  Score=69.48  Aligned_cols=67  Identities=27%  Similarity=0.498  Sum_probs=45.4

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCC----CCCeEEEEEEeCCCCceee
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV----EDSGIYQCTATNRVGSQTH   90 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~~~   90 (291)
                      +.|.|.+.|.|.|.++|++++..+......  ........  .+|.|..+..    .|.|.|+|.+.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~--~~~~~~~~--g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDP--KVTMKPNT--GTLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCC--CEEEeCCC--ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            579999999999999999999887411100  01111112  3466666653    3789999999998886443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.17  E-value=2.4e-10  Score=71.50  Aligned_cols=35  Identities=23%  Similarity=0.480  Sum_probs=28.5

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  150 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~  150 (291)
                      ..+.+.+|+.+.|.|.+ .+ |.+.+.|++++..+..
T Consensus         4 ~~~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~   38 (89)
T cd04979           4 KVVTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQR   38 (89)
T ss_pred             eEEEEECCCcEEEEEeC-CC-CCceEEEEECCccccc
Confidence            34677899999999998 45 7789999999876643

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.17  E-value=5.6e-10  Score=69.62  Aligned_cols=70  Identities=20%  Similarity=0.242  Sum_probs=52.0

Q ss_pred             ceeeeecCCcEEEEEEecCCCCCeeEEEECCeec---------CCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---------AGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .++++.+|++++|.|.+.+.....+.|++.+..+         .+.++...    .......+|.|.+++.+|+|.|.|.
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~----~~~~~~~tL~I~~vq~~D~G~Y~Cq   80 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLV----NFSSNELRVSLSNVSLSDEGRYFCQ   80 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEE----eCCCCEEEEEECcCCcccCEEEEEE
Confidence            4578999999999999998666678999866432         12233221    1134567899999999999999999


Q ss_pred             EeC
Q psy14540         81 ATN   83 (291)
Q Consensus        81 ~~~   83 (291)
                      +..
T Consensus        81 v~t   83 (95)
T cd05881          81 LYT   83 (95)
T ss_pred             EEc
Confidence            874

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.17  E-value=5e-10  Score=68.99  Aligned_cols=26  Identities=31%  Similarity=0.714  Sum_probs=22.5

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      |++++|.|.+ .+.|.+.+.|++.++.
T Consensus         1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~   26 (84)
T cd05861           1 GETITVNCIV-QGNEVVDFSWTYPGKD   26 (84)
T ss_pred             CCcEEEEEEE-ECCCccEEEEEECCcc
Confidence            7889999999 6788899999987754

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.17  E-value=7.7e-10  Score=69.41  Aligned_cols=85  Identities=22%  Similarity=0.381  Sum_probs=49.2

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC--CceEEecc---CCceEEEEEeeCCCCC-ceeEEEEEE
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD--AEITIRSS---GEYTSSLSIATLSTGH-SGNYTCVAS  184 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~---~~~~~~l~i~~~~~~d-~g~y~C~~~  184 (291)
                      .......+.+|+.+.|.|.+....++..+.|.+++..+...  .++.+...   ....+.|.|.++...| .|.|.|.|.
T Consensus         6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~   85 (98)
T cd05898           6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAW   85 (98)
T ss_pred             ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEE
Confidence            33455778899999999999434444578998887765443  23333221   1223455555554433 455555555


Q ss_pred             ecCCCCCCceE
Q psy14540        185 NTVASDNHSSN  195 (291)
Q Consensus       185 ~~~~~~~~~~~  195 (291)
                      |..|.....++
T Consensus        86 N~~G~d~~~i~   96 (98)
T cd05898          86 NSFGSGTAIIQ   96 (98)
T ss_pred             eCCccceEEEE
Confidence            55555544433

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.17  E-value=3.4e-10  Score=68.43  Aligned_cols=63  Identities=29%  Similarity=0.536  Sum_probs=45.4

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecC---CCeeEeceEEeeccceEEEEEEeecC----CCCCeEEEEEEeCCCCcee
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLA---GDRFVMGQYMSLHGDVISHVNISSVR----VEDSGIYQCTATNRVGSQT   89 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~y~C~~~~~~~~~~   89 (291)
                      +.|.|.+.|.|.|.++|+|++..+.   ..++..     ....  .+|.|.++.    ..|+|.|+|.+.|..|...
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~-----~~~~--~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM-----RRRS--GTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL   70 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE-----eCCC--ceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence            4799999999999999999998764   222221     1111  357787764    2469999999999988643

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>KOG3515|consensus

Probab=99.17  E-value=1.3e-09  Score=90.87  Aligned_cols=267  Identities=16%  Similarity=0.157  Sum_probs=159.0

Q ss_pred             cceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540          9 FIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      +....+..|+...+.|...+ +|...+.|+++......................-.+........|.|.|+|.+.+....
T Consensus       307 t~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~  386 (741)
T KOG3515|consen  307 TSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA  386 (741)
T ss_pred             CcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccc
Confidence            34455888999999998765 78888999996554431111111111111122233445667788999999999876644


Q ss_pred             eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEE
Q psy14540         88 QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLS  167 (291)
Q Consensus        88 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~  167 (291)
                      ...+....+...+.+.    ............+++.....-.+....+.+.+.|.+++-.+............ ......
T Consensus       387 ~~sss~~~l~~l~~p~----~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~-~~~~~s  461 (741)
T KOG3515|consen  387 HSSSSSFLLPVLPSPA----FLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGA-GAGLGS  461 (741)
T ss_pred             cccccceeccccCCch----hhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeec-cccccc
Confidence            3333333333322111    11111222333344444444444234456789999988777655442222111 122344


Q ss_pred             EeeCCCCCceeEEEEEEecCCCCCCceEEE--------------------------------------------------
Q psy14540        168 IATLSTGHSGNYTCVASNTVASDNHSSNLR--------------------------------------------------  197 (291)
Q Consensus       168 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~--------------------------------------------------  197 (291)
                      ..++.+.|.|.|.|.+.|..|.......+.                                                  
T Consensus       462 ~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~  541 (741)
T KOG3515|consen  462 GVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQ  541 (741)
T ss_pred             cceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCccc
Confidence            556889999999999999888665544422                                                  


Q ss_pred             --------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc---ccCCceEEEEEEeecC
Q psy14540        198 --------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE---LMEGVRTQVACVVQSG  266 (291)
Q Consensus       198 --------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~---~~~g~~v~l~C~~~~~  266 (291)
                              -......+.+.......++.|.|.+.+..........+.+..++.....+...   ..-+..++..|.+ .+
T Consensus       542 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~a-~~  620 (741)
T KOG3515|consen  542 IDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCVA-SG  620 (741)
T ss_pred             ccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccCCceeeeccCccccccccee-cc
Confidence                    00115666666666777899999999843444445556666555555544433   2222389999977 99


Q ss_pred             CCCceEEEEECCEEc
Q psy14540        267 DLPLSLQWYKNGLAI  281 (291)
Q Consensus       267 ~p~~~v~W~~~~~~l  281 (291)
                      .|.+.+.|-++....
T Consensus       621 ~~~~~~~~~k~p~~~  635 (741)
T KOG3515|consen  621 VPSTSFTTAKTPLQT  635 (741)
T ss_pred             cccceeecccCCCcc
Confidence            999999999997763

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.16  E-value=1.3e-09  Score=67.83  Aligned_cols=87  Identities=14%  Similarity=0.210  Sum_probs=66.0

Q ss_pred             eeeeecCCcEEEEEEecCCCCCe-eEEEECCeecCCCee-EeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRF-VMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ   88 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   88 (291)
                      .+.|.+|+++.|.|.+.+.|.+. +.|.+++..+.+... ...........-.+.|.+..++.+|.|.|+|.+.|.....
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            45799999999999999999998 999998876652211 1111111112345889999999999999999999988888


Q ss_pred             eeeeeEEEE
Q psy14540         89 THSADMRVY   97 (291)
Q Consensus        89 ~~~~~l~v~   97 (291)
                      +..+.|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            877777764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.16  E-value=2.4e-10  Score=66.47  Aligned_cols=62  Identities=42%  Similarity=0.700  Sum_probs=48.0

Q ss_pred             cCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540         16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV   85 (291)
Q Consensus        16 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   85 (291)
                      +|++++|.|.+.+.+.+.+.|++++..+.. ...       .......|.|.+++..|+|.|+|.+.+..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~-------~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE-SNR-------LSASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC-CCE-------EecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            589999999987788889999999887661 110       01122469999999999999999998654

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.15  E-value=2e-10  Score=70.12  Aligned_cols=22  Identities=32%  Similarity=0.644  Sum_probs=18.9

Q ss_pred             eEEEEEeeCCCCCceeEEeECCE
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGL  146 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~  146 (291)
                      ++|.|.+ .|.|.|.+.|++++.
T Consensus         1 v~l~C~~-~G~P~P~v~W~~~~~   22 (79)
T cd05734           1 VTLNCSA-EGYPPPTIVWKHSKG   22 (79)
T ss_pred             CEeEeeC-eEeCCCEEEEEECCC
Confidence            5799999 699999999999643

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.15  E-value=4.7e-10  Score=70.50  Aligned_cols=66  Identities=30%  Similarity=0.585  Sum_probs=43.9

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCC-CCCceeEEEEEEecCCC
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNYTCVASNTVAS  189 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~  189 (291)
                      .|..+.|.|.+ .|.|.+.++|++++..+...........   ...|.|.++. ..|.|.|+|.|.|..|.
T Consensus        18 ~~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~~---~~~L~i~~~~~~~d~G~Y~C~a~N~~G~   84 (91)
T cd04967          18 DEGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSLV---GGNLVISNPSKAKDAGRYQCLASNIVGT   84 (91)
T ss_pred             CCCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEEE---CCEEEEecCCccCCCEEEEEEEEcCCCE
Confidence            44679999999 6889999999999988743222111111   2346666555 36777777777776663

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.14  E-value=4.1e-10  Score=65.73  Aligned_cols=63  Identities=30%  Similarity=0.553  Sum_probs=44.8

Q ss_pred             CCcEEEEEEe-cCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540         17 GPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus        17 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      |++++|.|.+ ...+...+.|+++++.........  ...........|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTN--RSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEE--EEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeE--eecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 557788999999987655222111  11111112224999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.13  E-value=4.5e-10  Score=69.96  Aligned_cols=71  Identities=25%  Similarity=0.341  Sum_probs=50.7

Q ss_pred             eeeecCCcEEEEEEec-----CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540         12 QTLQPGPPVSLKCIAT-----GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~-----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      +.+.+|.+..|.|.-.     ..+.+.+.|||++.++........   ...+  ...|.|.++..+|+|.|+|.+.+..+
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~---~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~   79 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFY---SLKG--STYLHIIDVSLNDSGYYTCKLQFTHE   79 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceE---ecCC--CCEEEEEEcChhhCEEEEEEEEEeeC
Confidence            5678999999999731     245678999999998873321110   1011  13499999999999999999997654


Q ss_pred             c
Q psy14540         87 S   87 (291)
Q Consensus        87 ~   87 (291)
                      .
T Consensus        80 g   80 (95)
T cd05897          80 G   80 (95)
T ss_pred             C
Confidence            3

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.11  E-value=4.7e-10  Score=69.64  Aligned_cols=77  Identities=19%  Similarity=0.276  Sum_probs=56.4

Q ss_pred             CCCcceee-cceeeeecCCcEEEEEE-ecCCCCCeeEEEECCeecC--CCeeEeceEEeeccceEEEEEEeecCCCCCe-
Q psy14540          1 SHPQLIYK-FIQQTLQPGPPVSLKCI-ATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDVISHVNISSVRVEDSG-   75 (291)
Q Consensus         1 s~p~~~~~-~~~~~v~~g~~v~l~C~-~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-   75 (291)
                      |.|.|... .....|.+|+.+.|.|. ..+.|.+.|.|++++...-  +.+..      ...+  ..|.|.+++..|+| 
T Consensus         1 ~~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~------~~~~--GnL~fs~v~~~D~g~   72 (95)
T cd05845           1 STPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVS------MGQN--GNLYFANVEEQDSHP   72 (95)
T ss_pred             CCCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEE------ECCC--ceEEEEEEehhhCCC
Confidence            45666654 46788999999999997 5679999999998664322  22211      1111  45899999999999 


Q ss_pred             EEEEEEeCCC
Q psy14540         76 IYQCTATNRV   85 (291)
Q Consensus        76 ~y~C~~~~~~   85 (291)
                      .|.|.+.+..
T Consensus        73 ~Y~C~a~~~~   82 (95)
T cd05845          73 DYICHAHFPG   82 (95)
T ss_pred             CeEEEEEccc
Confidence            8999998654

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.10  E-value=1.6e-09  Score=67.49  Aligned_cols=90  Identities=23%  Similarity=0.361  Sum_probs=55.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCce-eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ...+.+.+|+.+.|.|.+ .++|.|. +.|.+++..+.............             ..-.             
T Consensus        10 ~~~~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~-------------~~~r-------------   62 (101)
T cd05860          10 NTTIFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNE-------------SNNR-------------   62 (101)
T ss_pred             CceEEEECCCCEEEEEEE-EeCCCCeeeEEEcCCcccCccccceeEEecc-------------CceE-------------
Confidence            345789999999999999 6899887 99999887654332211111100             0001             


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                               +.+.|.|..+..+++|.|+|.|.|.....+.++.|.|.
T Consensus        63 ---------Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~  100 (101)
T cd05860          63 ---------YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN  100 (101)
T ss_pred             ---------EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence                     23456666666666666666666666666666666553

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.09  E-value=1.1e-09  Score=63.66  Aligned_cols=62  Identities=37%  Similarity=0.711  Sum_probs=43.9

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      +|+.++|.|.+ .+.|.+.+.|++++..+..  .....   .....|.|..+...|.|.|+|.+.|..
T Consensus         1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~--~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLPE--SNRLS---ASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeC-ccCCCCeEEEEECCEECCC--CCEEe---cCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            47889999997 6888899999999887761  11111   123467777777777777777776654

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.08  E-value=9.2e-10  Score=68.68  Aligned_cols=31  Identities=16%  Similarity=0.388  Sum_probs=25.9

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      +.+.+|+.++|.|.+ .+.+.+.+.|+++++.
T Consensus         2 v~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k   32 (94)
T cd07690           2 VLGKKGDTAELPCTA-SQKKSIQFHWKNSNQI   32 (94)
T ss_pred             eEeeCCCCEEEEEEe-CCCCCcEEEEEECCcE
Confidence            457789999999998 6788899999987643

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.07  E-value=5.2e-10  Score=65.32  Aligned_cols=63  Identities=30%  Similarity=0.652  Sum_probs=40.9

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceE-EEEEeeCCCCCceeEEEEE
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS-SLSIATLSTGHSGNYTCVA  183 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~g~y~C~~  183 (291)
                      |+.++|.|.+..+.+...+.|++++................... .|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            78899999985577788999999987665443333322222111 2666666666666666654

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=99.06  E-value=2.5e-09  Score=66.79  Aligned_cols=84  Identities=19%  Similarity=0.283  Sum_probs=55.7

Q ss_pred             ceeeeecCCcEEEEEEecC-----------CCCCeeEEEECCeecCC-CeeEec-eEEeeccceEEEEEEeecCCCCCeE
Q psy14540         10 IQQTLQPGPPVSLKCIATG-----------NPTPHISWKLDGYPLAG-DRFVMG-QYMSLHGDVISHVNISSVRVEDSGI   76 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~-----------~~~~~v~W~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~   76 (291)
                      ....+.+|+.+.|.|....           .....+.|+|++..+.. ...... .+....+   ..|.|.++..+|+|.
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~---~~Lwf~Pa~~eDSG~   84 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE---DSIWFRPAELQDSGL   84 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC---CEEEEEeCChhhCeE
Confidence            3467899999999998621           22347999999755542 111111 1111112   348999999999999


Q ss_pred             EEEEEeCCCCceeeeeeEEE
Q psy14540         77 YQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        77 y~C~~~~~~~~~~~~~~l~v   96 (291)
                      |+|.+.+.......++.|+|
T Consensus        85 Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          85 YTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEEEECCCCcceEEEEEEEC
Confidence            99999987766665555543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.06  E-value=3.5e-09  Score=63.47  Aligned_cols=67  Identities=21%  Similarity=0.315  Sum_probs=49.0

Q ss_pred             cEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540         19 PVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        19 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      .+.|+|...+ +|.+.|+||++++++.......  .....-...++|.|.....+|.+.|+|++.|..+.
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~--~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQ--ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCcccc--cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            3689999886 8999999999999987321111  00001124467999998999999999999987765

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.05  E-value=8.7e-10  Score=68.60  Aligned_cols=70  Identities=23%  Similarity=0.399  Sum_probs=51.6

Q ss_pred             ceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC---CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540         10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA---GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV   85 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   85 (291)
                      ....+.+|+.+.|.|.... .|.+.+.|++++..+.   +.+.    ... .  ....|.|.+++.+|+|.|+|.+.+..
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~----~~~-~--~~G~L~fs~v~~~D~g~Y~C~A~n~~   83 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR----FVS-Q--TNGNLYIAKVEASDRGNYSCFVSSPS   83 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe----EEe-C--CCCcEEEeecCHhhCceeEEEEEecc
Confidence            4456899999999998764 7889999999986532   1111    111 1  12348999999999999999998754


Q ss_pred             C
Q psy14540         86 G   86 (291)
Q Consensus        86 ~   86 (291)
                      .
T Consensus        84 ~   84 (96)
T cd05727          84 S   84 (96)
T ss_pred             c
Confidence            3

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=99.05  E-value=2.8e-09  Score=69.11  Aligned_cols=83  Identities=23%  Similarity=0.402  Sum_probs=55.5

Q ss_pred             cCCcEEEEEEecCC------CCCeeEEEECC---e-e--c---CCCeeEe-c---eEEe--eccceEEEEEEeecCCCCC
Q psy14540         16 PGPPVSLKCIATGN------PTPHISWKLDG---Y-P--L---AGDRFVM-G---QYMS--LHGDVISHVNISSVRVEDS   74 (291)
Q Consensus        16 ~g~~v~l~C~~~~~------~~~~v~W~~~~---~-~--~---~~~~~~~-~---~~~~--~~~~~~~~l~i~~~~~~d~   74 (291)
                      .|++++|.|.+...      ....|.|++..   . .  +   ....... .   .+..  ......++|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            48999999998753      25679999962   1 0  1   0111110 0   0010  1133558899999999999


Q ss_pred             eEEEEEEeCCCCceeeeeeEEEEc
Q psy14540         75 GIYQCTATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~~~~l~v~~   98 (291)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999997766677777777754

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.04  E-value=2.4e-09  Score=69.87  Aligned_cols=79  Identities=18%  Similarity=0.239  Sum_probs=54.4

Q ss_pred             eeecceeeeecCCcEEEEEEecCCCCCeeEEEECCee--c----C--CC-e-eEeceEEe--eccceEEEEEEeecCCCC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP--L----A--GD-R-FVMGQYMS--LHGDVISHVNISSVRVED   73 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~----~--~~-~-~~~~~~~~--~~~~~~~~l~i~~~~~~d   73 (291)
                      ...|....+.+|++++|.|.+.+.+...+.|++....  .    .  .. . ....+...  ......+.|.|.+++.+|
T Consensus         2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D   81 (109)
T cd04983           2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD   81 (109)
T ss_pred             eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence            4556778899999999999998767778999984321  0    0  00 0 00111111  112356889999999999


Q ss_pred             CeEEEEEEeCC
Q psy14540         74 SGIYQCTATNR   84 (291)
Q Consensus        74 ~G~y~C~~~~~   84 (291)
                      +|.|.|.+.+.
T Consensus        82 sG~Y~C~~~~~   92 (109)
T cd04983          82 SAVYFCALSES   92 (109)
T ss_pred             CEEEEEEEecC
Confidence            99999998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=99.04  E-value=9.5e-10  Score=66.51  Aligned_cols=74  Identities=34%  Similarity=0.544  Sum_probs=52.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...+.......+. ++|.|.+.+.+ .+.++|+ +...      .............+.|.|.++..+|.|.|+|.
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~------~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~   72 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNP------SFNSNSRGSSSSNSTLTISNVTRSDNGTYTCI   72 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEE------EEEEEEEEEEEEEEEEEESSCCGGGTEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCC------ceeeeeeeccceeeEEEEccCCHHhCcEEEEE
Confidence            68888888776555555 99999999865 8889999 1111      01111112233457799999999999999999


Q ss_pred             EeC
Q psy14540         81 ATN   83 (291)
Q Consensus        81 ~~~   83 (291)
                      +.|
T Consensus        73 a~N   75 (75)
T PF13927_consen   73 ASN   75 (75)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            864

...

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.03  E-value=1.8e-09  Score=67.09  Aligned_cols=72  Identities=26%  Similarity=0.461  Sum_probs=52.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEe-ccCCCceEEeccCCceEEEEEeeCCCCCce-eEEEEEEecCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP-ILSDAEITIRSSGEYTSSLSIATLSTGHSG-NYTCVASNTVA  188 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~  188 (291)
                      ...+.+.+|+.+.|.|....|.|.|.+.|++++.. +....+....    ..+.|.|.++...|.| .|.|.|.|...
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~----~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG----QNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC----CCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            34578899999999998658999999999987644 2223333222    2356888888888888 68888887654

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=99.03  E-value=2.7e-09  Score=66.86  Aligned_cols=74  Identities=20%  Similarity=0.288  Sum_probs=55.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...|. ..|.+|++|+|.|... .+...+.|+++|........       ........+.|.+++.+|+|.|+|..
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~-------~~~~~~~~f~i~~v~~~~~G~Y~C~~   72 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP-------PEPQNKAKFFIPSMKREHAGRYRCYY   72 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc-------CCCceeEEEEccCCChhHCEEEEEEE
Confidence            577777775 4789999999999876 56678999999875442110       11233466899999999999999998


Q ss_pred             eCC
Q psy14540         82 TNR   84 (291)
Q Consensus        82 ~~~   84 (291)
                      .+.
T Consensus        73 ~~~   75 (91)
T cd05751          73 RSG   75 (91)
T ss_pred             ECC
Confidence            764

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>smart00410 IG_like Immunoglobulin like

Probab=99.01  E-value=1.3e-08  Score=63.16  Aligned_cols=71  Identities=31%  Similarity=0.705  Sum_probs=45.5

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeEC-CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKN-GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ..+..|+.+.|.|.+ .+.+.+.+.|+++ +..+....+........ ...|.+..+...|.|.|.|.+.+..+
T Consensus         4 ~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00410        4 VTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             EEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCC
Confidence            566789999999999 4557889999998 77765344333332221 34555555555555555555554433

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.01  E-value=1.3e-08  Score=63.16  Aligned_cols=71  Identities=31%  Similarity=0.705  Sum_probs=45.5

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeEC-CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKN-GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ..+..|+.+.|.|.+ .+.+.+.+.|+++ +..+....+........ ...|.+..+...|.|.|.|.+.+..+
T Consensus         4 ~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~   75 (86)
T smart00409        4 VTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSG   75 (86)
T ss_pred             EEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCC
Confidence            566789999999999 4557889999998 77765344333332221 34555555555555555555554433

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.01  E-value=1e-08  Score=64.98  Aligned_cols=29  Identities=24%  Similarity=0.576  Sum_probs=24.7

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      ....+.+|+.++|.|.+ .+.+.+.+.|++
T Consensus         5 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~   33 (95)
T cd05717           5 QDVTVVEGGTATLKCRV-KNNDNSSLQWSN   33 (95)
T ss_pred             CcEEEcCCCCEEEEEEE-CCCCCceEEEeC
Confidence            34678899999999998 577888999985

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.00  E-value=8.7e-09  Score=63.32  Aligned_cols=70  Identities=24%  Similarity=0.442  Sum_probs=48.0

Q ss_pred             cEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEe-eccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540         19 PVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMS-LHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ   88 (291)
Q Consensus        19 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   88 (291)
                      .+.|.|.+.+ .|.+.++|+++|+.+............ ......+.|.|......|.|.|+|.+.+.....
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~   72 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT   72 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence            3689999987 688899999999987743322111000 011234678888888888899999998765443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.00  E-value=4.9e-09  Score=66.93  Aligned_cols=78  Identities=12%  Similarity=0.143  Sum_probs=51.4

Q ss_pred             eeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC---eeEe-----------ceEEeeccceEEEEEEeecCC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD---RFVM-----------GQYMSLHGDVISHVNISSVRV   71 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~---~~~~-----------~~~~~~~~~~~~~l~i~~~~~   71 (291)
                      ++++.+..+.+|+++.|.|.....+...+.|+|+.......   .+..           ..+.....  ..+|.|.+++.
T Consensus         2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~--ngSL~I~~v~~   79 (105)
T cd05774           2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP--NGSLLIQNVTQ   79 (105)
T ss_pred             eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC--CCcEEEecCCc
Confidence            45666778999999999998755555589999963211100   0000           00111111  14799999999


Q ss_pred             CCCeEEEEEEeCCC
Q psy14540         72 EDSGIYQCTATNRV   85 (291)
Q Consensus        72 ~d~G~y~C~~~~~~   85 (291)
                      .|+|.|+|.+.+..
T Consensus        80 ~D~G~Y~~~v~~~~   93 (105)
T cd05774          80 KDTGFYTLQTITTN   93 (105)
T ss_pred             ccCEEEEEEEEeCC
Confidence            99999999998655

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=99.00  E-value=9.9e-09  Score=66.89  Aligned_cols=79  Identities=16%  Similarity=0.257  Sum_probs=50.8

Q ss_pred             ecceeeeecCCcEEEEEEecCC----CCCeeEEEE---------------CCeecC--CCeeEece-EEeeccceEEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGN----PTPHISWKL---------------DGYPLA--GDRFVMGQ-YMSLHGDVISHVN   65 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~---------------~~~~~~--~~~~~~~~-~~~~~~~~~~~l~   65 (291)
                      .+....+..|+.++|.|.+...    +...|.|.+               +|....  ...+.... ..........+|.
T Consensus         4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~   83 (116)
T cd05879           4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV   83 (116)
T ss_pred             ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence            4566789999999999999762    345799943               122111  01000000 0111123457899


Q ss_pred             EeecCCCCCeEEEEEEeCCCC
Q psy14540         66 ISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      |.+++.+|.|.|+|.+.+...
T Consensus        84 I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          84 IHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             EccCCcccCEEEEEEEEcCCC
Confidence            999999999999999987654

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.99  E-value=8.1e-09  Score=66.76  Aligned_cols=82  Identities=17%  Similarity=0.352  Sum_probs=52.9

Q ss_pred             cCCcEEEEEEecCCC------------CCeeEEEEC--Cee---cC--CCeeEe-----ceEEeec---cceEEEEEEee
Q psy14540         16 PGPPVSLKCIATGNP------------TPHISWKLD--GYP---LA--GDRFVM-----GQYMSLH---GDVISHVNISS   68 (291)
Q Consensus        16 ~g~~v~l~C~~~~~~------------~~~v~W~~~--~~~---~~--~~~~~~-----~~~~~~~---~~~~~~l~i~~   68 (291)
                      .|++++|+|.+....            .+.|.|+|.  +..   +.  ......     .+.....   ....++|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999997532            358999984  211   10  111110     0111111   23568899999


Q ss_pred             cCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540         69 VRVEDSGIYQCTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~~~~~~~~~~~l~v~   97 (291)
                      ++.+|+|.|+|.+.+........+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            99999999999998665566666666664

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.99  E-value=8.1e-09  Score=67.02  Aligned_cols=83  Identities=24%  Similarity=0.418  Sum_probs=55.2

Q ss_pred             cCCcEEEEEEecCCC----------CCeeEEEEC--CeecC-----CCeeEec----eEEee----ccceEEEEEEeecC
Q psy14540         16 PGPPVSLKCIATGNP----------TPHISWKLD--GYPLA-----GDRFVMG----QYMSL----HGDVISHVNISSVR   70 (291)
Q Consensus        16 ~g~~v~l~C~~~~~~----------~~~v~W~~~--~~~~~-----~~~~~~~----~~~~~----~~~~~~~l~i~~~~   70 (291)
                      .|++++|+|.+...+          ...+.|+|.  ++...     .......    .+...    .....++|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            389999999997532          356999984  22111     1111000    01111    22355789999999


Q ss_pred             CCCCeEEEEEEeCCCCceeeeeeEEEEc
Q psy14540         71 VEDSGIYQCTATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        71 ~~d~G~y~C~~~~~~~~~~~~~~l~v~~   98 (291)
                      .+|+|.|.|.+..........+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999987666777788888764

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.98  E-value=6.6e-09  Score=63.22  Aligned_cols=63  Identities=27%  Similarity=0.469  Sum_probs=49.0

Q ss_pred             ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      ...++.+|+++.|.|...+. ...+.|++++..+.. .++..     ..    ..|.|.+++..|+|.|.|.+.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~-----~~----~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRV-----GT----DGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEE-----eC----CCCEEEECCHhhCEEEEEEEe
Confidence            45789999999999998864 569999999998763 22221     11    126799999999999999976

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.98  E-value=1.5e-08  Score=60.94  Aligned_cols=28  Identities=21%  Similarity=0.526  Sum_probs=24.9

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSD  151 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~  151 (291)
                      +.|.|.+.+++|.+.++||+++.++...
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~   29 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGK   29 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCc
Confidence            6899999889999999999999988543

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.98  E-value=7.9e-09  Score=63.86  Aligned_cols=28  Identities=14%  Similarity=0.323  Sum_probs=20.3

Q ss_pred             CCceEEEEEeeC-CCCCceeEEeECCEec
Q psy14540        121 GDRAGVQCLVTK-GDPPLTISWLKNGLPI  148 (291)
Q Consensus       121 g~~~~l~C~~~~-~~p~~~~~W~~~~~~~  148 (291)
                      |+++.|.|.+.. ..+...+.|.+.+...
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~   29 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKE   29 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCccc
Confidence            788999999942 2345688998876543

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PHA03376 BARF1; Provisional

Probab=98.97  E-value=2.5e-08  Score=68.24  Aligned_cols=132  Identities=17%  Similarity=0.268  Sum_probs=72.6

Q ss_pred             ceeecCCCceEEEEEee--CCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      .+....|+.+.|+|...  ...+...+.|+|.+.-   .........+..   ....  +....|.+.            
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~---~~~VvL~~~ggd---Vv~~--QmEyRGrtD------------   79 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPG---EEQVLIGRMHHD---VIFI--EWPFRGFFD------------   79 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCC---CCCEEEEEcCCe---eeee--eeccccEEE------------
Confidence            45667899999999863  1224568999996420   111111111100   0000  001111111            


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCcee--------EEEEecCCCCCCCCcccccCCceEEEEEEee
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS--------NLRVNVPPHIGPFTFGELMEGVRTQVACVVQ  264 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~--------~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~  264 (291)
                         +.-...+.+|.|.+++..|.|.|+|.+.......-..-        .|.|+.....       ...-...+++|.+ 
T Consensus        80 ---~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~d-------Fp~~~~~~i~C~s-  148 (221)
T PHA03376         80 ---IHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQ-------FPDFSVLTVTCTV-  148 (221)
T ss_pred             ---EEecCCeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEecccc-------CCCCCeeEEEEec-
Confidence               11111356788889999999999998886552221111        2333331111       1224567899996 


Q ss_pred             cCCCCceEEEEEC
Q psy14540        265 SGDLPLSLQWYKN  277 (291)
Q Consensus       265 ~~~p~~~v~W~~~  277 (291)
                      +|+|.|-++|+-+
T Consensus       149 ggfP~P~~~Wle~  161 (221)
T PHA03376        149 NAFPHPHVQWLMP  161 (221)
T ss_pred             CCcCCchheeccc
Confidence            9999999999965

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.97  E-value=1.6e-08  Score=62.13  Aligned_cols=27  Identities=19%  Similarity=0.497  Sum_probs=22.9

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILS  150 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~  150 (291)
                      +.|.|.+.+++|.+.++|+++|.++..
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~   28 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDG   28 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccC
Confidence            689999966688899999999988753

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.97  E-value=5.5e-09  Score=68.17  Aligned_cols=78  Identities=21%  Similarity=0.242  Sum_probs=53.5

Q ss_pred             eeecceeeeecCCcEEEEEEecCCCCCeeEEEECCe--ecC------C--Ce----eEeceEEe-eccceEEEEEEeecC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY--PLA------G--DR----FVMGQYMS-LHGDVISHVNISSVR   70 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~~------~--~~----~~~~~~~~-~~~~~~~~l~i~~~~   70 (291)
                      .+.|....+.+|++++|.|.+.+ +...+.|||...  ...      .  ..    ....++.. ......++|.|.+++
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~   80 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE   80 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence            45677889999999999999987 667899999432  111      0  00    00111111 112246889999999


Q ss_pred             CCCCeEEEEEEeCC
Q psy14540         71 VEDSGIYQCTATNR   84 (291)
Q Consensus        71 ~~d~G~y~C~~~~~   84 (291)
                      .+|+|.|.|.+...
T Consensus        81 ~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          81 PEDSAVYLCASSLG   94 (110)
T ss_pred             hhhCEEEEEEeeCC
Confidence            99999999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.96  E-value=8.3e-09  Score=66.88  Aligned_cols=83  Identities=19%  Similarity=0.283  Sum_probs=54.2

Q ss_pred             cCCcEEEEEEecCC------CCCeeEEEECCee--------cCCCee-E----eceEEee--ccceEEEEEEeecCCCCC
Q psy14540         16 PGPPVSLKCIATGN------PTPHISWKLDGYP--------LAGDRF-V----MGQYMSL--HGDVISHVNISSVRVEDS   74 (291)
Q Consensus        16 ~g~~v~l~C~~~~~------~~~~v~W~~~~~~--------~~~~~~-~----~~~~~~~--~~~~~~~l~i~~~~~~d~   74 (291)
                      .|++++|.|.+...      ....|.|+|....        +..... .    ...+...  .....++|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            48999999998754      2356999995311        001000 0    0001111  112346899999999999


Q ss_pred             eEEEEEEeCCCCceeeeeeEEEEc
Q psy14540         75 GIYQCTATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~~~~l~v~~   98 (291)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999988777777777777753

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.96  E-value=2.6e-09  Score=66.52  Aligned_cols=74  Identities=19%  Similarity=0.275  Sum_probs=50.5

Q ss_pred             eeecCCCceEEEEEeeC----CCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        116 IKVHSGDRAGVQCLVTK----GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~----~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ..+..|....|.|.-..    ..+.+.+.|||++.++...........  ....|.+.++..+|+|.|+|.+.+..+...
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~--~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~   82 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK--GSTYLHIIDVSLNDSGYYTCKLQFTHEGKK   82 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC--CCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence            35667889999996322    346679999999998865442221111  123588888888888888888888765443

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.92  E-value=1.2e-08  Score=63.63  Aligned_cols=28  Identities=18%  Similarity=0.427  Sum_probs=23.2

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~  145 (291)
                      +...+|+.+.|.|..  +.|.+.+.|++.+
T Consensus         6 ~~~~eG~~v~L~C~~--~~p~p~v~Wykq~   33 (91)
T cd05871           6 VYGVENNSTFLECLP--KSPQASVKWLFQR   33 (91)
T ss_pred             EEEecCCcEEEEEEC--CCCCceEEEEEEC
Confidence            457789999999996  4788999999843

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.91  E-value=2e-08  Score=64.36  Aligned_cols=80  Identities=16%  Similarity=0.294  Sum_probs=50.7

Q ss_pred             CCcEEEEEEecCC---CCCeeEEEECCe--ecC---CCee-------EeceEEee----ccceEEEEEEeecCCCCCeEE
Q psy14540         17 GPPVSLKCIATGN---PTPHISWKLDGY--PLA---GDRF-------VMGQYMSL----HGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus        17 g~~v~l~C~~~~~---~~~~v~W~~~~~--~~~---~~~~-------~~~~~~~~----~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      |++++|+|.+...   ....+.|++...  .+.   ....       ....+...    ...+.++|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            7899999998632   234689988542  110   1000       00011111    123457899999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEE
Q psy14540         78 QCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v   96 (291)
                      +|.+.+..+.....+.|+|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999976666666666665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.91  E-value=1.4e-08  Score=64.49  Aligned_cols=80  Identities=23%  Similarity=0.333  Sum_probs=52.3

Q ss_pred             CCcEEEEEEecCCC-CCeeEEEECCe----ecC----------CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540         17 GPPVSLKCIATGNP-TPHISWKLDGY----PLA----------GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus        17 g~~v~l~C~~~~~~-~~~v~W~~~~~----~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      |++++|.|...... ...|.|+|...    .+.          ...+.............++|.|.+++.+|+|.|+|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            78999999976533 23699998421    110          0111111111122334588999999999999999997


Q ss_pred             e-CCCCceeeeeeEEE
Q psy14540         82 T-NRVGSQTHSADMRV   96 (291)
Q Consensus        82 ~-~~~~~~~~~~~l~v   96 (291)
                      . .+.|.....+.|+|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            7 56777777777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.91  E-value=2.2e-08  Score=68.94  Aligned_cols=91  Identities=19%  Similarity=0.225  Sum_probs=62.4

Q ss_pred             ceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecC----CC-----eeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540         10 IQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLA----GD-----RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ...+|.+|++++|.|... +...+.++|+|..+.+.    .+     .+.............+.|+|.+++.+|+|.|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C  102 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC  102 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence            346789999999999985 45677899999643221    11     010000001122234789999999999999999


Q ss_pred             EEe-CCCC-ceeeeeeEEEEcCC
Q psy14540         80 TAT-NRVG-SQTHSADMRVYDAP  100 (291)
Q Consensus        80 ~~~-~~~~-~~~~~~~l~v~~~~  100 (291)
                      .+. .+.| ..+....|+|....
T Consensus       103 ~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        103 IFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEecCCCCCceeEEEEEEEchh
Confidence            976 4566 67888888887654

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.91  E-value=1.4e-08  Score=65.77  Aligned_cols=79  Identities=18%  Similarity=0.336  Sum_probs=53.2

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCC-CCeeEEEECC--ee---cC--CCeeE---eceEEeeccceEEEEEEeecCCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDG--YP---LA--GDRFV---MGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~--~~---~~--~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      +.+.|....+.+|++++|.|.+.+.. ...+.|||..  +.   +.  .....   ..+.........+.|.|.+++.+|
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D   82 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED   82 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence            45677888999999999999987643 5679999832  21   11  00000   011111223345789999999999


Q ss_pred             CeEEEEEEeC
Q psy14540         74 SGIYQCTATN   83 (291)
Q Consensus        74 ~G~y~C~~~~   83 (291)
                      +|.|.|.+.+
T Consensus        83 sg~Y~Ca~~~   92 (106)
T cd04980          83 AAVYYCQQYG   92 (106)
T ss_pred             CEEEEEEEeC
Confidence            9999999854

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.90  E-value=2.6e-08  Score=65.26  Aligned_cols=79  Identities=22%  Similarity=0.270  Sum_probs=49.8

Q ss_pred             ecceeeeecCCcEEEEEEecCCC----CCeeEEEEC----Cee--cC---CC-------eeEeceE-EeeccceEEEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNP----TPHISWKLD----GYP--LA---GD-------RFVMGQY-MSLHGDVISHVNI   66 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~----~~~--~~---~~-------~~~~~~~-~~~~~~~~~~l~i   66 (291)
                      .|..+.+.+|++++|.|.+...+    ...|.|++.    +..  +.   ..       ++..... ........++|.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            35677899999999999986432    246999852    111  10   00       1100000 0011234577999


Q ss_pred             eecCCCCCeEEEEEEeCCCC
Q psy14540         67 SSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~~~   86 (291)
                      .+++.+|+|.|+|.+.+...
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eeCChhhCEEEEEEEEeCCC
Confidence            99999999999999986544

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.89  E-value=2e-08  Score=66.24  Aligned_cols=78  Identities=21%  Similarity=0.319  Sum_probs=52.8

Q ss_pred             eeecceeeeecCCcEEEEEEecC--CCCCeeEEEEC--Ceec------CC--Cee-----EeceEEeeccc--eEEEEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLD--GYPL------AG--DRF-----VMGQYMSLHGD--VISHVNI   66 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~--~~~~------~~--~~~-----~~~~~~~~~~~--~~~~l~i   66 (291)
                      .+.|..+.+.+|++++|.|.+.+  .+...+.|++.  +...      ..  ...     ...+.......  ..+.|+|
T Consensus         2 ~Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   81 (116)
T cd04982           2 EQPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI   81 (116)
T ss_pred             CCcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence            35577788999999999999876  56778999994  2211      00  000     01111111122  5688999


Q ss_pred             eecCCCCCeEEEEEEeC
Q psy14540         67 SSVRVEDSGIYQCTATN   83 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~   83 (291)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          82 QNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EECCHHHCEEEEEEEec
Confidence            99999999999999863

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.89  E-value=9e-09  Score=63.05  Aligned_cols=33  Identities=42%  Similarity=0.871  Sum_probs=28.2

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      ..+.+|+.+.|.|.+ .+.|...+.|++++..+.
T Consensus         9 ~~v~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~   41 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSV-SGNPPPQVQWYKNGSPIN   41 (80)
T ss_dssp             SEEETTSEEEEEEEE-ESSSSSEEEEEETTEEEE
T ss_pred             eEEeCCCcEEEEEEE-Ecccceeeeeeeeeeeee
Confidence            457899999999999 488889999999887664

...

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.89  E-value=1.9e-08  Score=63.37  Aligned_cols=68  Identities=19%  Similarity=0.247  Sum_probs=45.7

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecCCCee---------E----eceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRF---------V----MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      |++|+|.|.........+.|+++.........         .    ...+.....+  .+|.|.+++.+|+|.|+|.+..
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~--~sL~I~~l~~~DsG~Y~c~v~~   78 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN--GSLLIQNLTKEDSGTYTLQIIS   78 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC--ceEEEccCCchhcEEEEEEEEc
Confidence            78999999987656668999996543221000         0    0011111122  7799999999999999999986


Q ss_pred             CCC
Q psy14540         84 RVG   86 (291)
Q Consensus        84 ~~~   86 (291)
                      ..+
T Consensus        79 ~~~   81 (92)
T cd05741          79 TNG   81 (92)
T ss_pred             CCC
Confidence            553

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.89  E-value=3.5e-08  Score=61.59  Aligned_cols=31  Identities=26%  Similarity=0.399  Sum_probs=24.4

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~  145 (291)
                      ..+.+.+|++++|.|.+ .+.....+.|++.+
T Consensus         5 ~nvtv~~G~ta~L~C~v-~~~~~~~v~w~~~~   35 (95)
T cd05881           5 EDVTVVEGEVAIISCRV-KNNDDSVIQLLNPN   35 (95)
T ss_pred             CceEEcCCCcEEEEEEE-ccCCccEEEEEecC
Confidence            34778899999999999 56556678888655

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.88  E-value=2.6e-08  Score=62.65  Aligned_cols=75  Identities=19%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...|. ..|.+|++|+|.|.... ....+.|+|+|........    .....+...+.+.|.+++.+|+|.|+|..
T Consensus         1 kP~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~----~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~   74 (94)
T cd05711           1 KPFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHL----YEKHHGGFQASFPLGPVTPAHAGTYRCYG   74 (94)
T ss_pred             CCEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceec----ccccCCeEEEEEEecCCCcccCEEEEEEE
Confidence            466666554 56889999999998764 5567999998865331110    00011334467899999999999999997


Q ss_pred             e
Q psy14540         82 T   82 (291)
Q Consensus        82 ~   82 (291)
                      .
T Consensus        75 ~   75 (94)
T cd05711          75 S   75 (94)
T ss_pred             E
Confidence            5

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.86  E-value=2.8e-08  Score=63.47  Aligned_cols=80  Identities=19%  Similarity=0.254  Sum_probs=50.8

Q ss_pred             CcEEEEEEecCCC---CCeeEEEECCee----cC----C------CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540         18 PPVSLKCIATGNP---TPHISWKLDGYP----LA----G------DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus        18 ~~v~l~C~~~~~~---~~~v~W~~~~~~----~~----~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ++++|.|.+....   ...|.|+|....    +.    .      ..+..............+|+|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5799999997643   446999995421    10    0      00000000001111457899999999999999999


Q ss_pred             Ee-CCCCceeeeeeEEEE
Q psy14540         81 AT-NRVGSQTHSADMRVY   97 (291)
Q Consensus        81 ~~-~~~~~~~~~~~l~v~   97 (291)
                      +. ...|.....+.|.|+
T Consensus        81 v~~~~~g~~~~~~~l~V~   98 (98)
T cd05718          81 FATFPQGNRQKVTTLTVL   98 (98)
T ss_pred             EEeCCCCcEEEEEEEEeC
Confidence            86 466777777777763

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.86  E-value=3.7e-08  Score=61.79  Aligned_cols=81  Identities=15%  Similarity=0.209  Sum_probs=55.9

Q ss_pred             CcceeecceeeeecCCcEEEEEEecC-CCCCe--eEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCe-EEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATG-NPTPH--ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG-IYQ   78 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~   78 (291)
                      -.+.+.+.+..+.+|+.++|.|.+.+ .|...  |.||+++..+....+...  ........++|.+.. ..+|.| .|+
T Consensus         2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~--~~~~~~~~stlt~~~-~r~D~g~~~s   78 (100)
T cd05755           2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN--TKSPVNAPATITITV-DREDHGANFS   78 (100)
T ss_pred             ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc--cCCCceeEEEEEEec-chhhCCcEEE
Confidence            35677777778999999999999997 77766  799999998874332210  111223445676654 455555 999


Q ss_pred             EEEeCCCC
Q psy14540         79 CTATNRVG   86 (291)
Q Consensus        79 C~~~~~~~   86 (291)
                      |++.....
T Consensus        79 C~A~l~l~   86 (100)
T cd05755          79 CETELDLR   86 (100)
T ss_pred             EEEEeccC
Confidence            99986543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.84  E-value=1.3e-08  Score=64.55  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=52.1

Q ss_pred             ecCCcEEEEEEecC-CCCCeeEEEECCeecC--CC-----e-eEe-ce--EEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540         15 QPGPPVSLKCIATG-NPTPHISWKLDGYPLA--GD-----R-FVM-GQ--YMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        15 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~--~~-----~-~~~-~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      ..|++|+|+|.... .....+.|++....+.  ..     . ... ..  .........++|+|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            37999999998865 4456799998643221  11     0 000 00  011112335789999999999999999998


Q ss_pred             CCCCc-eeeeeeEEE
Q psy14540         83 NRVGS-QTHSADMRV   96 (291)
Q Consensus        83 ~~~~~-~~~~~~l~v   96 (291)
                      ...+. ....+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            66543 344555554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.83  E-value=1.3e-08  Score=63.55  Aligned_cols=35  Identities=17%  Similarity=0.306  Sum_probs=24.9

Q ss_pred             eeecCCCceEEEEEeeC----------CCCCceeEEeECCEeccC
Q psy14540        116 IKVHSGDRAGVQCLVTK----------GDPPLTISWLKNGLPILS  150 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~----------~~p~~~~~W~~~~~~~~~  150 (291)
                      ..+.+|+.+.|.|....          ..+...+.|+|++.....
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~   54 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEE   54 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCC
Confidence            56789999999998622          122347999999755433

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.82  E-value=1.1e-07  Score=62.69  Aligned_cols=79  Identities=16%  Similarity=0.337  Sum_probs=50.0

Q ss_pred             ecceeeeecCCcEEEEEEecCCC----CCeeEEEECCe------ec-C--CCee-E--eceE---E---eeccceEEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDGY------PL-A--GDRF-V--MGQY---M---SLHGDVISHVN   65 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~------~~-~--~~~~-~--~~~~---~---~~~~~~~~~l~   65 (291)
                      .|..+.+.+|++++|.|.+....    ...+.|++...      .+ .  .... .  ...+   .   .......++|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            46677899999999999986422    25699987321      11 0  0000 0  0000   0   01122347899


Q ss_pred             EeecCCCCCeEEEEEEeCCCC
Q psy14540         66 ISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      |.+++.+|+|.|.|.+.+...
T Consensus        84 I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             EeeCCcccCEEEEEEEEeCCC
Confidence            999999999999999986543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.81  E-value=5.8e-08  Score=60.73  Aligned_cols=80  Identities=21%  Similarity=0.277  Sum_probs=52.1

Q ss_pred             CcEEEEEEecC-CCCCeeEEEECCe----ecC--C--------CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540         18 PPVSLKCIATG-NPTPHISWKLDGY----PLA--G--------DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        18 ~~v~l~C~~~~-~~~~~v~W~~~~~----~~~--~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      ++++|.|.+.. ....+|+|.|...    .+.  .        ..+.........+...++|.|.|++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            47899999975 3345799988321    111  0        0111111111123345789999999999999999976


Q ss_pred             -CCCCceeeeeeEEEE
Q psy14540         83 -NRVGSQTHSADMRVY   97 (291)
Q Consensus        83 -~~~~~~~~~~~l~v~   97 (291)
                       .+.|.....+.|.|+
T Consensus        81 tfP~G~~~~~~~l~~~   96 (96)
T cd05887          81 TFPLGNTQSSTTVTVL   96 (96)
T ss_pred             eCCCCCeeEEEEEEEC
Confidence             678888888888763

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.80  E-value=2.2e-08  Score=65.91  Aligned_cols=80  Identities=16%  Similarity=0.243  Sum_probs=53.8

Q ss_pred             ceeecceeeeecCCcEEEEEEec-CCCCCeeEEEECCe-----ecC---CC--------eeEece-EEeeccceEEEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGY-----PLA---GD--------RFVMGQ-YMSLHGDVISHVNI   66 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~-----~~~---~~--------~~~~~~-~~~~~~~~~~~l~i   66 (291)
                      +...|....+.+|+++.|.|... ......+.|++...     .+.   ..        .+.... .........++|.|
T Consensus         4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i   83 (114)
T PF07686_consen    4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI   83 (114)
T ss_dssp             EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence            34557888999999999999998 44566799998322     110   00        000000 11112234578999


Q ss_pred             eecCCCCCeEEEEEEeCC
Q psy14540         67 SSVRVEDSGIYQCTATNR   84 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~   84 (291)
                      .+++.+|+|.|.|.+...
T Consensus        84 ~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   84 KNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SSESGGGEEEEEEEEEES
T ss_pred             CCCCcCcCEEEEEEEEEC
Confidence            999999999999999854

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.80  E-value=1.7e-07  Score=56.45  Aligned_cols=77  Identities=19%  Similarity=0.260  Sum_probs=48.7

Q ss_pred             EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc-eeeeeeEEEE
Q psy14540         20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVY   97 (291)
Q Consensus        20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~   97 (291)
                      +.|.|.+.+ .|...|+|+++++++...... ...........++|.|......|...|+|++.|..-. ......|.|+
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            689999987 889999999999998743211 0001111234577777555555555999999876532 3333444443

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.79  E-value=1.3e-07  Score=61.11  Aligned_cols=39  Identities=18%  Similarity=0.440  Sum_probs=33.1

Q ss_pred             eEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEc
Q psy14540         60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        60 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~   98 (291)
                      +.++|.|.+++.+|+|.|+|.+.+........+.|.|..
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            458899999999999999999988777777777777753

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.78  E-value=4.8e-08  Score=62.27  Aligned_cols=71  Identities=17%  Similarity=0.370  Sum_probs=47.5

Q ss_pred             eeecCCcEEEEEEecCC--CCCeeEEEECCe--ecC-----C-C--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540         13 TLQPGPPVSLKCIATGN--PTPHISWKLDGY--PLA-----G-D--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus        13 ~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~~~-----~-~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .+.+|++++|.|.+...  ....+.||+...  ...     . .  .....+.........+.|+|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            57899999999998764  456799998321  111     0 0  0001122222333567899999999999999999


Q ss_pred             EeC
Q psy14540         81 ATN   83 (291)
Q Consensus        81 ~~~   83 (291)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.78  E-value=9.4e-08  Score=60.96  Aligned_cols=78  Identities=13%  Similarity=0.175  Sum_probs=48.8

Q ss_pred             cEEEEEEecCCC---CCeeEEEECCe-----ecC-----CCeeEe-----ceEE-eeccceEEEEEEeecCCCCCeEEEE
Q psy14540         19 PVSLKCIATGNP---TPHISWKLDGY-----PLA-----GDRFVM-----GQYM-SLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus        19 ~v~l~C~~~~~~---~~~v~W~~~~~-----~~~-----~~~~~~-----~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +++|+|.+....   ...|.|+|...     .+.     .+....     .... .......++|+|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            689999987533   34799998321     110     000000     0111 1112345779999999999999999


Q ss_pred             EEeC-CCCceeeeeeEEE
Q psy14540         80 TATN-RVGSQTHSADMRV   96 (291)
Q Consensus        80 ~~~~-~~~~~~~~~~l~v   96 (291)
                      .+.+ +.|.....+.|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9884 6666666666665

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.78  E-value=3.6e-08  Score=60.01  Aligned_cols=63  Identities=25%  Similarity=0.471  Sum_probs=47.7

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEE
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS  184 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  184 (291)
                      ...+..|+.+.|.|.. . .+...+.|++++..+..+.+.....     ..|.|..++..|+|.|.|.+.
T Consensus         5 ~~tv~~g~~v~L~C~~-~-s~~A~v~W~~ng~~l~~~~r~~~~~-----~GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           5 NRTVAPGADVVLPCQL-R-SNLASPVWLFNGTPLNAQFSYRVGT-----DGLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             EEEEecCCCEEEECCC-C-CCCccEEEEECCcccCCCcceEEeC-----CCCEEEECCHhhCEEEEEEEe
Confidence            3678899999999998 3 3466999999999986654444332     237788888888888888875

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.77  E-value=1.3e-07  Score=59.68  Aligned_cols=78  Identities=18%  Similarity=0.338  Sum_probs=49.7

Q ss_pred             cEEEEEEecC-CC---CCeeEEEECC--e--ecC--CC--------eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540         19 PVSLKCIATG-NP---TPHISWKLDG--Y--PLA--GD--------RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus        19 ~v~l~C~~~~-~~---~~~v~W~~~~--~--~~~--~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .++|.|.+.. .+   ..+|+|.+..  .  .+.  ..        .+.............++|.|.+++.+|+|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            6899999974 22   2259998832  1  110  10        0111111111122447899999999999999999


Q ss_pred             EeC-CCCceeeeeeEEE
Q psy14540         81 ATN-RVGSQTHSADMRV   96 (291)
Q Consensus        81 ~~~-~~~~~~~~~~l~v   96 (291)
                      +.+ +.|..+..+.|.|
T Consensus        82 v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          82 FATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEeCCCCCeEEEEEEEE
Confidence            997 6777777888776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.77  E-value=2.8e-07  Score=56.44  Aligned_cols=27  Identities=22%  Similarity=0.500  Sum_probs=23.8

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILS  150 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~  150 (291)
                      +.|.|.+.+++|.+.|+|+++|.++..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~   28 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEG   28 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCC
Confidence            689999987889999999999988754

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.76  E-value=1.6e-07  Score=60.86  Aligned_cols=39  Identities=26%  Similarity=0.438  Sum_probs=32.6

Q ss_pred             ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                      ....+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence            346789999999999999999999876666777777765

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.76  E-value=6.9e-08  Score=62.51  Aligned_cols=74  Identities=26%  Similarity=0.411  Sum_probs=49.2

Q ss_pred             eeecCCcEEEEEEecCC-CCCeeEEEECCee-----cC---CC-----eeEeceEE-e-eccceEEEEEEeecCCCCCeE
Q psy14540         13 TLQPGPPVSLKCIATGN-PTPHISWKLDGYP-----LA---GD-----RFVMGQYM-S-LHGDVISHVNISSVRVEDSGI   76 (291)
Q Consensus        13 ~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~-----~~---~~-----~~~~~~~~-~-~~~~~~~~l~i~~~~~~d~G~   76 (291)
                      ++.+|++++|.|.+... +...+.|++....     +.   ..     .....+.. . ......++|+|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            57899999999999875 6778999984321     10   00     00001111 1 111256789999999999999


Q ss_pred             EEEEEeCCCC
Q psy14540         77 YQCTATNRVG   86 (291)
Q Consensus        77 y~C~~~~~~~   86 (291)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999986543

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.75  E-value=9.3e-08  Score=61.60  Aligned_cols=82  Identities=23%  Similarity=0.368  Sum_probs=52.7

Q ss_pred             CCcEEEEEEecCCC-------CCeeEEEECC-----eec----C-CCeeE-e---ceEEee----ccceEEEEEEeecCC
Q psy14540         17 GPPVSLKCIATGNP-------TPHISWKLDG-----YPL----A-GDRFV-M---GQYMSL----HGDVISHVNISSVRV   71 (291)
Q Consensus        17 g~~v~l~C~~~~~~-------~~~v~W~~~~-----~~~----~-~~~~~-~---~~~~~~----~~~~~~~l~i~~~~~   71 (291)
                      |++++|+|.+.-.|       .+.|.|.+..     ...    . ..... .   ..+...    ...+.++|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78999999976322       4679999841     111    0 11100 0   011111    113458899999999


Q ss_pred             CCCeEEEEEEeCCCCceeeeeeEEEEc
Q psy14540         72 EDSGIYQCTATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        72 ~d~G~y~C~~~~~~~~~~~~~~l~v~~   98 (291)
                      +|+|.|.|.+..........+.|.|..
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999987665677777777753

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.73  E-value=1.3e-07  Score=61.65  Aligned_cols=32  Identities=16%  Similarity=0.395  Sum_probs=26.1

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~  145 (291)
                      +..+.+.+|++++|.|.+ .+.+...+.|++..
T Consensus         5 ~~~v~~~~G~~v~L~C~~-~~~~~~~v~W~k~~   36 (109)
T cd04983           5 PQSLSVQEGENVTLNCNY-STSTFYYLFWYRQY   36 (109)
T ss_pred             CCceEEcCCCCEEEEEEE-CCCCccEEEEEEEC
Confidence            345788899999999998 45577899999854

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.72  E-value=1.6e-07  Score=60.81  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=33.0

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                      ..+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          67 DASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             cEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence            5679999999999999999999988888889988885

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.71  E-value=3.1e-07  Score=56.22  Aligned_cols=65  Identities=23%  Similarity=0.452  Sum_probs=44.2

Q ss_pred             EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540         20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus        20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      ++|.|.+.+ +|.+.|+|+++|+.+.........  ...+.   ..+.|.+......|...|+|++.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~--~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLE--DGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEE--CCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            689999998 688899999999988743221111  11111   235566656666677799999997654

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.71  E-value=1.6e-07  Score=58.82  Aligned_cols=65  Identities=14%  Similarity=0.255  Sum_probs=41.4

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      ..+.+|++|+|.|..  ..+...+.|+++|.......    .........+.|..++.+|+|.|+|...+.
T Consensus        11 ~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKK----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEec--CCCCCEEEEEECCCCccccc----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            467899999999987  46677899999987543210    111122345666666666666666665543

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.70  E-value=2.2e-07  Score=56.85  Aligned_cols=26  Identities=23%  Similarity=0.547  Sum_probs=23.3

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEecc
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      +.|.|.+.+++|.+.++|+++++.+.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~   27 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELK   27 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEcc
Confidence            68999998788999999999998885

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.70  E-value=1.6e-07  Score=61.91  Aligned_cols=79  Identities=20%  Similarity=0.320  Sum_probs=52.9

Q ss_pred             ceeecceeeeecCCcEEEEEEecCC-CCCeeEEEEC--CeecC-----CCee--E-eceEEee--ccceEEEEEEeecCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLD--GYPLA-----GDRF--V-MGQYMSL--HGDVISHVNISSVRV   71 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~--~~~~~-----~~~~--~-~~~~~~~--~~~~~~~l~i~~~~~   71 (291)
                      +.+.|..+.+.+|++++|.|.+... ....+.|++.  +..+.     ....  . ..+....  .....++|.|.+++.
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~   81 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL   81 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence            4567788899999999999998753 4567999983  22110     0000  0 0111111  233468899999999


Q ss_pred             CCCeEEEEEEeC
Q psy14540         72 EDSGIYQCTATN   83 (291)
Q Consensus        72 ~d~G~y~C~~~~   83 (291)
                      +|+|.|.|.+..
T Consensus        82 ~Dsg~Y~C~~~~   93 (116)
T cd07706          82 EDSAKYFCALST   93 (116)
T ss_pred             HHCEEEEEEEEC
Confidence            999999999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.68  E-value=3e-07  Score=56.31  Aligned_cols=66  Identities=21%  Similarity=0.333  Sum_probs=43.3

Q ss_pred             EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540         20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      +.|.|.+.+ .|.+.|.|+++++.+.... .. ......+  ...+.|.+......+.+.|+|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~-~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LK-EEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-ee-EecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            689999987 6888999999999886332 11 1111111  13355666555555667999999876543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.68  E-value=2.7e-07  Score=56.35  Aligned_cols=68  Identities=16%  Similarity=0.294  Sum_probs=44.6

Q ss_pred             EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceE-EeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540         20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQY-MSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      ++|.|.+.+ +|...|+|+++|..+.......... ........+.|.+......+...|+|++.+....
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999998 7788999999999886432211110 0001123466777655566667999999876543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.68  E-value=1.9e-07  Score=59.54  Aligned_cols=70  Identities=21%  Similarity=0.285  Sum_probs=48.3

Q ss_pred             eeeecCCcEEEEEEecC-CCCCeeEEEECCeecC--------------CCeeEeceEEeeccceEEEEEEeecCCCCCeE
Q psy14540         12 QTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA--------------GDRFVMGQYMSLHGDVISHVNISSVRVEDSGI   76 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   76 (291)
                      +.+.+|++++|.|.+.. .....+.|++....-.              .+++..   ........+.|+|.+++.+|+|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~---~~~~~~~~~~L~I~~v~~~DsG~   78 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSL---TDDPDNGVFTVTLNQLRKEDAGW   78 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEE---EecCCCCEEEEEEcCCCHHHCEE
Confidence            46789999999999875 3466799998532110              111111   11223456889999999999999


Q ss_pred             EEEEEeCC
Q psy14540         77 YQCTATNR   84 (291)
Q Consensus        77 y~C~~~~~   84 (291)
                      |.|.+...
T Consensus        79 Y~C~~~~~   86 (98)
T cd05716          79 YWCGVGDD   86 (98)
T ss_pred             EEEEcccC
Confidence            99998743

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.68  E-value=1e-07  Score=60.45  Aligned_cols=72  Identities=24%  Similarity=0.325  Sum_probs=49.6

Q ss_pred             ecCCcEEEEEEecCC-C-CCeeEEEECCeecCCCee--EeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540         15 QPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRF--VMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus        15 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      ..|+.++|.|.+.+. | .+.++|+++|..+.....  .............+.|.+......|.+.|+|.+.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            478999999999984 5 468999999998874432  11111111112335677777777799999999987654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.67  E-value=2.8e-07  Score=57.91  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=29.4

Q ss_pred             eecCCCceEEEEEeeCCCCCce--eEEeECCEeccC
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLT--ISWLKNGLPILS  150 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~--~~W~~~~~~~~~  150 (291)
                      .+.+|+.++|.|.+.++.|.+.  +.||+++..+..
T Consensus        12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~   47 (100)
T cd05755          12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSR   47 (100)
T ss_pred             cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccc
Confidence            4578999999999988899886  799999988854

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.67  E-value=2e-07  Score=60.85  Aligned_cols=31  Identities=13%  Similarity=0.332  Sum_probs=25.3

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~  145 (291)
                      +....+.+|++++|.|.+ .+ +...+.||+..
T Consensus         5 p~~~~v~~G~~v~l~C~~-~~-~~~~v~Wykq~   35 (110)
T cd05899           5 PRYLIKGRGQSVTLRCSQ-TS-GHDNMYWYRQD   35 (110)
T ss_pred             CCceEEcCCCcEEEEEEE-CC-CCCEEEEEEEC
Confidence            345788999999999998 45 67789999854

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.67  E-value=2.7e-07  Score=57.78  Aligned_cols=77  Identities=19%  Similarity=0.352  Sum_probs=46.8

Q ss_pred             CcEEEEEEecC-CCCCeeEEEECCe----ecC------C----CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540         18 PPVSLKCIATG-NPTPHISWKLDGY----PLA------G----DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        18 ~~v~l~C~~~~-~~~~~v~W~~~~~----~~~------~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      +.++|.|.... .....|+|.|-..    .+.      .    ..+..............+|.|.|++.+|+|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            47899999875 3456689998422    111      0    0110000011111234789999999999999999986


Q ss_pred             -CCCCceeeeeeE
Q psy14540         83 -NRVGSQTHSADM   94 (291)
Q Consensus        83 -~~~~~~~~~~~l   94 (291)
                       .+.|...+.+.+
T Consensus        81 t~P~g~~~~~i~~   93 (96)
T cd05889          81 TYPQGSWEKVIEV   93 (96)
T ss_pred             eCCCCCeEEEEEE
Confidence             456666665543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.67  E-value=2.4e-07  Score=58.72  Aligned_cols=75  Identities=27%  Similarity=0.497  Sum_probs=47.5

Q ss_pred             cCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE
Q psy14540        119 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR  197 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  197 (291)
                      ..|+.++|.|.+.+.+| ...++|+++|..+.....              .........|.|+.                
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~--------------~~~~~~~~~gt~~~----------------   60 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT--------------TTPPVPNSDGTYSV----------------   60 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee--------------ccccccCCCCCEEE----------------
Confidence            46889999999965556 478999999998865432              11122233344433                


Q ss_pred             EeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540        198 VNEYTSSLSIATLSTGHSGNYTCVASNTVA  227 (291)
Q Consensus       198 ~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  227 (291)
                          .+.|.+.....++.+.|+|.|.+...
T Consensus        61 ----~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          61 ----SSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             ----EEEEEECHHHhCCCCCEEEEEEeCCC
Confidence                23455555555677777777776653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.66  E-value=3.1e-07  Score=55.15  Aligned_cols=77  Identities=17%  Similarity=0.341  Sum_probs=52.5

Q ss_pred             eeeeecCCcEEEEEEecC--CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540         11 QQTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ   88 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   88 (291)
                      +..+..|++++|+|....  .|.+.++|...+...-.          .......+|.+.+++..|+|.++|.+.......
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~----------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~   77 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ----------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEK   77 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce----------eccCCccEEEeceeCcccCCEEEEEEEECceEE
Confidence            346889999999999965  33558999975543221          001122458899999999999999997554444


Q ss_pred             eeeeeEEEE
Q psy14540         89 THSADMRVY   97 (291)
Q Consensus        89 ~~~~~l~v~   97 (291)
                      ...+.+.|.
T Consensus        78 ~~~~~V~Vl   86 (88)
T cd07694          78 TLKLDIKVL   86 (88)
T ss_pred             EEEeeEEEE
Confidence            455555554

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.65  E-value=5.5e-07  Score=58.31  Aligned_cols=38  Identities=21%  Similarity=0.479  Sum_probs=31.8

Q ss_pred             cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                      ....|.|.+++.+|+|.|.|.+.+.....+..+.|.|.
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            46789999999999999999999777677777777664

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.65  E-value=1.1e-06  Score=57.40  Aligned_cols=27  Identities=26%  Similarity=0.422  Sum_probs=22.9

Q ss_pred             cceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVASNTVA  227 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~~~~~~  227 (291)
                      .+.++.|.+++..|.|.|+|.+.|...
T Consensus        78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          78 KDGSIVIHNLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             CeeEEEEccCCcccCEEEEEEEEcCCC
Confidence            466889999999999999999998764

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.65  E-value=3.3e-07  Score=60.58  Aligned_cols=77  Identities=21%  Similarity=0.185  Sum_probs=50.2

Q ss_pred             eecceeeeecCCcEEEEEEecCCC------CCeeEEEECCee------c--CC-Ce-e--Ee-ceEEe--eccceEEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP------TPHISWKLDGYP------L--AG-DR-F--VM-GQYMS--LHGDVISHVN   65 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~------~~~v~W~~~~~~------~--~~-~~-~--~~-~~~~~--~~~~~~~~l~   65 (291)
                      ..|..+.+.+|++|+|.|.+....      ...+.|++....      +  .. .. .  .. .+...  ......++|.
T Consensus         4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~   83 (119)
T cd05712           4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL   83 (119)
T ss_pred             cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence            346778899999999999876321      345999984321      1  00 00 0  00 11111  1244568899


Q ss_pred             EeecCCCCCeEEEEEEeC
Q psy14540         66 ISSVRVEDSGIYQCTATN   83 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~   83 (291)
                      |.+++.+|+|.|.|.+..
T Consensus        84 I~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          84 ISDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             EccCChhhCeEEEEEEEc
Confidence            999999999999999864

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.64  E-value=3.9e-07  Score=55.69  Aligned_cols=27  Identities=26%  Similarity=0.549  Sum_probs=23.8

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILS  150 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~  150 (291)
                      ++|.|.+.+++|...++|+++|..+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~   28 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKD   28 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcC
Confidence            689999988899999999999998754

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.62  E-value=2.4e-07  Score=58.89  Aligned_cols=84  Identities=15%  Similarity=0.300  Sum_probs=52.8

Q ss_pred             CCcceeec-ceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCe
Q psy14540          2 HPQLIYKF-IQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSG   75 (291)
Q Consensus         2 ~p~~~~~~-~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G   75 (291)
                      ||.+.+-+ .......++.++|.|.+.+ .| ...|.|++||+.+..+... .......+.   ..+.|.+....+.+..
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~-~~~~~~~dgty~~~s~L~v~~~~w~~~~   79 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQT-STTEQQSDNTYSLSSYLTLTKSDWNKHK   79 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEec-cccEECCCCCEEEEEEEEEcHHHhCCCC
Confidence            56665443 4444557888999999998 55 6779999999988633211 111111111   2355666555555567


Q ss_pred             EEEEEEeCCCC
Q psy14540         76 IYQCTATNRVG   86 (291)
Q Consensus        76 ~y~C~~~~~~~   86 (291)
                      .|+|.+.+...
T Consensus        80 ~~sC~V~H~~l   90 (100)
T cd07699          80 VYTCEVTHEGL   90 (100)
T ss_pred             eEEEEEEecCC
Confidence            99999987543

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.60  E-value=9.7e-07  Score=57.30  Aligned_cols=38  Identities=26%  Similarity=0.461  Sum_probs=32.0

Q ss_pred             cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                      ....|.|.+++.+|+|.|.|.+..........+.|.|.
T Consensus        70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~  107 (110)
T cd05878          70 GDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT  107 (110)
T ss_pred             CcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence            46789999999999999999999877777777777775

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.60  E-value=3.1e-07  Score=59.46  Aligned_cols=28  Identities=21%  Similarity=0.571  Sum_probs=22.4

Q ss_pred             eecCCCceEEEEEeeCCC-CCceeEEeECC
Q psy14540        117 KVHSGDRAGVQCLVTKGD-PPLTISWLKNG  145 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~  145 (291)
                      .+.+|+.++|.|.+. .. +...+.|++..
T Consensus         2 ~v~~G~~v~L~C~~~-~~~~~~~v~W~k~~   30 (105)
T cd00099           2 SVSEGESVTLSCTYS-GSFSSYYIFWYRQK   30 (105)
T ss_pred             eecCCCCEEEEEEEe-CCcCcceEEEEEEC
Confidence            467899999999984 44 67789999854

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.59  E-value=2.3e-06  Score=53.30  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=49.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.+-... .+..|+..+|.|.+.+ .| ...++|++||..+. +. .........+..+....-..+...+...|+|
T Consensus         1 pP~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~-~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC   77 (93)
T cd05770           1 TPKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KV-EQSDLSFSKDWTFYLLKSTEFTPTKGDEYAC   77 (93)
T ss_pred             CCEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-Cc-EECcEEECCCCCEEEEEEEEECCCCCCeEEE
Confidence            4665553332 3456777899999998 44 56799999999877 32 2222222222222222222445667779999


Q ss_pred             EEeCCC
Q psy14540         80 TATNRV   85 (291)
Q Consensus        80 ~~~~~~   85 (291)
                      ++.+..
T Consensus        78 ~V~H~~   83 (93)
T cd05770          78 RVRHNS   83 (93)
T ss_pred             EEEECC
Confidence            998754

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.57  E-value=4.7e-07  Score=57.60  Aligned_cols=76  Identities=20%  Similarity=0.358  Sum_probs=49.1

Q ss_pred             eecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        117 KVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ....++.++|.|.+.+.+| ...+.|++||..+.....              ......+..|.|+..             
T Consensus        13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~--------------~~~~~~~~dgty~~~-------------   65 (100)
T cd07699          13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQ--------------TSTTEQQSDNTYSLS-------------   65 (100)
T ss_pred             HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEe--------------ccccEECCCCCEEEE-------------
Confidence            3446778999999977787 678999999998753210              011112334566542             


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                             +.|.+..-..+++..|+|.+.+..
T Consensus        66 -------s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          66 -------SYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             -------EEEEEcHHHhCCCCeEEEEEEecC
Confidence                   345555555556778888887765

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.57  E-value=1.1e-06  Score=56.86  Aligned_cols=70  Identities=23%  Similarity=0.344  Sum_probs=45.6

Q ss_pred             eeecCCcEEEEEEecC-CCCCeeEEEECCee-----c------C-CCeeE------eceEE--eeccceEEEEEEeecCC
Q psy14540         13 TLQPGPPVSLKCIATG-NPTPHISWKLDGYP-----L------A-GDRFV------MGQYM--SLHGDVISHVNISSVRV   71 (291)
Q Consensus        13 ~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~-----~------~-~~~~~------~~~~~--~~~~~~~~~l~i~~~~~   71 (291)
                      .+.+|++++|.|.+.. .....+.||+....     +      . .....      ...+.  .......+.|+|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            5789999999999865 33457999983221     0      0 00000      01111  12234457899999999


Q ss_pred             CCCeEEEEEEe
Q psy14540         72 EDSGIYQCTAT   82 (291)
Q Consensus        72 ~d~G~y~C~~~   82 (291)
                      +|+|.|.|...
T Consensus        82 ~Dsg~YyCa~~   92 (107)
T cd07700          82 EDSGTYFCMTV   92 (107)
T ss_pred             HHCEEEEEeEc
Confidence            99999999975

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.55  E-value=9.4e-07  Score=61.05  Aligned_cols=98  Identities=19%  Similarity=0.236  Sum_probs=61.9

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      .+.+.+|++++|.|....+...+.++|+|....+.     .....   +             +.+    .  .+. ...+
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~Ia-----tY~~~---g-------------~~i----~--~~F-k~Rv   75 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIA-----GYGPC---G-------------PVI----V--DKF-KNKI   75 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEE-----EEecC---C-------------cEE----C--hhh-cCeE
Confidence            46788999999999974455678899998643110     00000   0             000    0  000 0112


Q ss_pred             E-EEEeccceEEEEeeeecCCCeeEEEEeeeCC-c-cCCceeEEEEecC
Q psy14540        195 N-LRVNEYTSSLSIATLSTGHSGNYTCVASNTV-A-SDNHSSNLRVNVP  240 (291)
Q Consensus       195 ~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~-~~~~~~~l~v~~~  240 (291)
                      . +........|.|.+++.+|+|.|.|.+.-.. | ..+...-|.|..+
T Consensus        76 e~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987         76 EYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence            1 2233346789999999999999999887643 5 7778888888754

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.52  E-value=3.3e-06  Score=54.59  Aligned_cols=34  Identities=26%  Similarity=0.599  Sum_probs=28.2

Q ss_pred             eecCCCceEEEEEeeCCCCC-ceeEEeECCEeccC
Q psy14540        117 KVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILS  150 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~  150 (291)
                      ....|+.++|.|.+.+.+|. ..++|++||..+..
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~   51 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA   51 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence            34468889999999877885 69999999999854

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.52  E-value=1.1e-06  Score=57.86  Aligned_cols=32  Identities=22%  Similarity=0.402  Sum_probs=25.5

Q ss_pred             CcceeecCCCceEEEEEeeCC--CCCceeEEeECC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKG--DPPLTISWLKNG  145 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~--~p~~~~~W~~~~  145 (291)
                      +..+.+.+|+.++|.|.+ .+  .+.+.+.||+..
T Consensus         5 p~~~~~~~G~~v~l~C~~-~~~~~~~~~v~Wyrq~   38 (116)
T cd04982           5 QLSITREESKSVTISCKV-SGIDFSTTYIHWYRQK   38 (116)
T ss_pred             CCeEEeCCCCCEEEEEEE-eCCCccccEEEEEEEC
Confidence            345778899999999998 44  567889999853

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.52  E-value=4.7e-06  Score=52.09  Aligned_cols=79  Identities=20%  Similarity=0.418  Sum_probs=47.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccce---EEEEEEeecCCCCCeE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDV---ISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~   76 (291)
                      ||.+.+-+.. ....|+..+|.|.+.+ .| ...++|.+||..+..+..... .....+..   .+.|.+.   ..+...
T Consensus         1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~-~~~~~Dgty~~~s~L~v~---~~~~~~   75 (94)
T cd05767           1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETR-YYPRQDLSFQKFSYLNFT---PEEGDI   75 (94)
T ss_pred             CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEee-eEeCCCCcEEEEEEEEEE---CCCCCe
Confidence            5666544433 2445677899999998 44 567999999998764322211 11122222   2344443   345569


Q ss_pred             EEEEEeCCC
Q psy14540         77 YQCTATNRV   85 (291)
Q Consensus        77 y~C~~~~~~   85 (291)
                      |+|.+.+..
T Consensus        76 ytC~V~H~~   84 (94)
T cd05767          76 YSCIVEHWG   84 (94)
T ss_pred             EEEEEEeCC
Confidence            999998754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.52  E-value=1.3e-06  Score=54.72  Aligned_cols=81  Identities=16%  Similarity=0.251  Sum_probs=48.5

Q ss_pred             eecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      ..|.......++.++|.|.+.+ .| ...|+|+++|..+..............+  ...+.|.+......+...|+|.+.
T Consensus         4 ~~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~   83 (94)
T cd05847           4 LHSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVT   83 (94)
T ss_pred             ECcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEE
Confidence            3444444445677999999998 45 4779999999986422111111111111  123556565544556679999998


Q ss_pred             CCCCc
Q psy14540         83 NRVGS   87 (291)
Q Consensus        83 ~~~~~   87 (291)
                      +....
T Consensus        84 H~~~~   88 (94)
T cd05847          84 HQGTT   88 (94)
T ss_pred             ECCee
Confidence            76543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.51  E-value=3.2e-06  Score=53.13  Aligned_cols=81  Identities=21%  Similarity=0.284  Sum_probs=47.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CCC-CeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPT-PHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.+.+....   |+.++|.|.+.+ .|. ..++|+++++.+...... .......+..........+...+.+.|+|
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~-~~~~~~~d~ty~~~s~l~v~~~~~~~ytC   77 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVES-GEILPNGDGTYQLWVTLEVPPEDKARYSC   77 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccc-cceEECCCCeEEEEEEEEECCCCCCEEEE
Confidence            677666554432   788999999998 454 489999999643322111 11111222222222222344457789999


Q ss_pred             EEeCCCC
Q psy14540         80 TATNRVG   86 (291)
Q Consensus        80 ~~~~~~~   86 (291)
                      .+.+...
T Consensus        78 ~V~H~~~   84 (93)
T cd07698          78 RVEHSGL   84 (93)
T ss_pred             EEEeCCC
Confidence            9986543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.51  E-value=6.6e-07  Score=57.54  Aligned_cols=70  Identities=17%  Similarity=0.350  Sum_probs=46.3

Q ss_pred             eeecCCcEEEEEEecCCCCCeeEEEECC----eec---C---C-CeeE-------eceEEeeccceEEEEEEeecCCCCC
Q psy14540         13 TLQPGPPVSLKCIATGNPTPHISWKLDG----YPL---A---G-DRFV-------MGQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus        13 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~----~~~---~---~-~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      .+.+|++|+|.|.........+.|++..    ...   .   . ....       ..++........+.|+|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            4789999999999865445679999833    211   0   1 0000       1112112223567899999999999


Q ss_pred             eEEEEEEe
Q psy14540         75 GIYQCTAT   82 (291)
Q Consensus        75 G~y~C~~~   82 (291)
                      |.|.|.+.
T Consensus        82 gtY~Ca~~   89 (104)
T cd05720          82 GYYFCSVA   89 (104)
T ss_pred             EEEEEEEc
Confidence            99999875

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.50  E-value=8.6e-06  Score=53.38  Aligned_cols=94  Identities=19%  Similarity=0.317  Sum_probs=50.7

Q ss_pred             cceeecCCCceEEEEEeeCCCC---CceeEEeECCEeccCCCceEEeccCCceEEEEEe-eCCCCCceeEEEEEEecCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP---PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIA-TLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+.+.+|++++|.|.+....+   ...+.|++....  ....         ...+... .......+.|.-++....  
T Consensus         6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~--~~~~---------~~v~~~~~~~~~~~~~~f~~R~~~~~--   72 (115)
T cd05880           6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLD--GGRE---------ESVFYYHKRPYPPPDGRFKGRVVWDG--   72 (115)
T ss_pred             ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCC--CCce---------eEEEEECCCccccCcccccCeEEEec--
Confidence            4477889999999999843322   246999862110  0000         0001100 000111222322221100  


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA  227 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  227 (291)
                             .......+|.|.+++.+|+|.|.|.+.|...
T Consensus        73 -------~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          73 -------NIMRRDASILIWQLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             -------CCcCCceEEEEeeCChhhCEEEEEEEEeCCC
Confidence                   0123356799999999999999999998664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.49  E-value=1.9e-06  Score=54.47  Aligned_cols=37  Identities=22%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             cceEEEEeeeecCCCeeEEEEeee-CCccCCceeEEEE
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVASN-TVASDNHSSNLRV  237 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~v  237 (291)
                      .+.+|.|.+++.+|+|.|+|.+.+ +.|..+..+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            468899999999999999999999 5677777777776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.49  E-value=2.6e-06  Score=55.10  Aligned_cols=74  Identities=22%  Similarity=0.367  Sum_probs=45.4

Q ss_pred             eeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEee-ccceEEEEEEeecCCCCCe-EEEEEEeCCCC
Q psy14540         12 QTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSL-HGDVISHVNISSVRVEDSG-IYQCTATNRVG   86 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~   86 (291)
                      ..+..|+.++|.|.+.+ .| ...++|++||+.+............. .....+.|.+.. ...|.| .|+|.+.+...
T Consensus        16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence            34567889999999998 55 46899999999886322111110000 111235566654 344444 69999987653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.48  E-value=6.9e-07  Score=56.22  Aligned_cols=24  Identities=38%  Similarity=0.407  Sum_probs=21.0

Q ss_pred             eEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        203 SSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       203 ~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                      .+|.|.+++.+|+|.|.|.+....
T Consensus        57 ~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741          57 GSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             ceEEEccCCchhcEEEEEEEEcCC
Confidence            679999999999999999988765

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.47  E-value=2.5e-06  Score=51.23  Aligned_cols=26  Identities=42%  Similarity=0.884  Sum_probs=21.5

Q ss_pred             eEEEEEeeCCCCC-ceeEEeECCEecc
Q psy14540        124 AGVQCLVTKGDPP-LTISWLKNGLPIL  149 (291)
Q Consensus       124 ~~l~C~~~~~~p~-~~~~W~~~~~~~~  149 (291)
                      ++|.|.+.+.+|. ..++|+++|+++.
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~   28 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVT   28 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECC
Confidence            6899999777776 6999999998753

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.47  E-value=2.7e-07  Score=55.57  Aligned_cols=58  Identities=34%  Similarity=0.698  Sum_probs=31.0

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN  185 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  185 (291)
                      ++|.|.+..+.+.+.+.|+ +......   ............|.+..+..+|.|.|+|.|.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~---~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY-DSNPSFN---SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE-TEEEEEE---EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE-ecCCcee---eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            9999999544448899999 1111000   00011111234556666666666666666554

...

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.46  E-value=1.3e-06  Score=57.44  Aligned_cols=77  Identities=22%  Similarity=0.422  Sum_probs=49.2

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC--------CCee-----EeceEEee--ccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA--------GDRF-----VMGQYMSL--HGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~--------~~~~-----~~~~~~~~--~~~~~~~l~i~   67 (291)
                      ..|....+.+|++++|.|......  ...+.||+.  |+...        ....     ...++...  .....+.|.|.
T Consensus         2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (117)
T cd04981           2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN   81 (117)
T ss_pred             ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence            356677899999999999876422  456999982  22110        0000     01111111  11234679999


Q ss_pred             ecCCCCCeEEEEEEeC
Q psy14540         68 SVRVEDSGIYQCTATN   83 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~   83 (291)
                      +++.+|+|.|.|.+..
T Consensus        82 ~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          82 SLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCHHHCEEEEEEEEc
Confidence            9999999999998763

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.46  E-value=2e-06  Score=54.77  Aligned_cols=36  Identities=25%  Similarity=0.475  Sum_probs=29.8

Q ss_pred             ceEEEEeeeecCCCeeEEEEeee-CCccCCceeEEEE
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASN-TVASDNHSSNLRV  237 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~v  237 (291)
                      ..+|.|.+++.+|+|.|.|.+.. +.|.....+.|.|
T Consensus        61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          61 DATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             ceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            56799999999999999999875 5577888887776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.46  E-value=1.2e-06  Score=55.98  Aligned_cols=36  Identities=22%  Similarity=0.403  Sum_probs=30.0

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                      ..+|.|.+++.+|+|.|.|.+.+..+.....+.|.|
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            457888999999999999999887777788888876

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.46  E-value=8.9e-06  Score=53.53  Aligned_cols=26  Identities=31%  Similarity=0.501  Sum_probs=22.6

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVA  227 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~  227 (291)
                      ..+|.|.+++.+|+|.|.|.+.+...
T Consensus        79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          79 DASIVIHNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeEEEEeeCCcccCEEEEEEEEeCCC
Confidence            56799999999999999999997653

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.46  E-value=2.4e-06  Score=53.47  Aligned_cols=37  Identities=16%  Similarity=0.385  Sum_probs=31.0

Q ss_pred             cceEEEEeeeecCCCeeEEEEeee-CCccCCceeEEEE
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVASN-TVASDNHSSNLRV  237 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~v  237 (291)
                      .+.+|.|.+++.+|+|.|+|.+.. +.|....+..|.|
T Consensus        58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            367899999999999999999876 4488888887776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.45  E-value=8.9e-06  Score=51.02  Aligned_cols=73  Identities=12%  Similarity=0.148  Sum_probs=43.6

Q ss_pred             eecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540         14 LQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        14 v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      +..|+.++|.|.+.+ .| ...++|+++|..+....... ......+........-.+...+...|+|.+.+....
T Consensus        11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~-~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVST-ELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceec-ceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence            457899999999998 44 45799999999876431111 111111112221122233445566999999876543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.45  E-value=2.3e-06  Score=54.35  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=29.7

Q ss_pred             cceEEEEeeeecCCCeeEEEEeeeC-CccCCceeEEEE
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVASNT-VASDNHSSNLRV  237 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~~~~-~~~~~~~~~l~v  237 (291)
                      ...+|.|.+++.+|+|.|.|.+... .|..+..+.|.|
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            3578999999999999999998754 477777777766

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.44  E-value=4.9e-06  Score=49.93  Aligned_cols=67  Identities=18%  Similarity=0.330  Sum_probs=42.1

Q ss_pred             cEEEEEEecC-CCC-CeeEEEECCeecCCCeeEeceEEeec--cceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540         19 PVSLKCIATG-NPT-PHISWKLDGYPLAGDRFVMGQYMSLH--GDVISHVNISSVRVEDSGIYQCTATNRV   85 (291)
Q Consensus        19 ~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~   85 (291)
                      .++|.|.+.+ .|. ..+.|+++|+.+..+...........  ....+.|.|......+...|+|.+.+..
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            3689999998 454 68999999987543322211111111  1133556666666667789999998654

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.43  E-value=2.6e-06  Score=54.44  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=24.5

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEE
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNL  235 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l  235 (291)
                      +++|.|.+++..|+|.|+|.+.+.. ......+.|
T Consensus        69 ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l  103 (105)
T cd05774          69 NGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHL  103 (105)
T ss_pred             CCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEE
Confidence            4678888888888999999888766 333444443

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>PHA03269 envelope glycoprotein C; Provisional

Probab=98.43  E-value=3.7e-05  Score=60.86  Aligned_cols=81  Identities=21%  Similarity=0.243  Sum_probs=57.3

Q ss_pred             EEEEEEeecCCCCCeEEEEEEeCC-CC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-
Q psy14540         61 ISHVNISSVRVEDSGIYQCTATNR-VG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-  136 (291)
Q Consensus        61 ~~~l~i~~~~~~d~G~y~C~~~~~-~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-  136 (291)
                      ...|.|.+++..++|.|.=.+.+. .+  .....+.+.+...|...         -....+.+|+...-.|.+.+.+|. 
T Consensus       288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVs---------V~p~PVL~Ge~YkAtC~vA~YYPp~  358 (566)
T PHA03269        288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNIT---------VIGDPVLLGNPYAAYCKVNKYYPPH  358 (566)
T ss_pred             ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcc---------ccCCccccCCCceEEEEeeeecCCC
Confidence            367999999999999998665422 22  23455566666555211         112356789999999999777774 


Q ss_pred             -ceeEEeECCEeccC
Q psy14540        137 -LTISWLKNGLPILS  150 (291)
Q Consensus       137 -~~~~W~~~~~~~~~  150 (291)
                       ..+.||+|+.++..
T Consensus       359 SvrlrWf~ng~~V~~  373 (566)
T PHA03269        359 SVIVKWTSNFGNIGK  373 (566)
T ss_pred             ceEEEEEeCCcccCc
Confidence             47999999988864

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.43  E-value=7.3e-07  Score=55.69  Aligned_cols=82  Identities=27%  Similarity=0.460  Sum_probs=49.0

Q ss_pred             CcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~   78 (291)
                      |.|.......... |+.+.|.|.+.+ +|.+.|+|+.++..+....  ..........   ..+.|.+......+...++
T Consensus         1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~   77 (89)
T PF08205_consen    1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVASN--TTQSSSPDNGLFTVSSTLTLTPTREDHGKTLT   77 (89)
T ss_dssp             EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEEE--EEEEEETTTTTEEEEEEEEEETTGGGTTEEEE
T ss_pred             CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeeee--eeeeeccCCCcceEEEEEEEEcChHHCCeEEE
Confidence            4455544333332 789999998776 8999999999987762111  1111111111   2356776654444566999


Q ss_pred             EEEeCCCCc
Q psy14540         79 CTATNRVGS   87 (291)
Q Consensus        79 C~~~~~~~~   87 (291)
                      |.+.+....
T Consensus        78 C~~~~~~~~   86 (89)
T PF08205_consen   78 CRASHPALS   86 (89)
T ss_dssp             EEEEETTCC
T ss_pred             EEEECCccC
Confidence            999876543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.42  E-value=3.8e-06  Score=54.18  Aligned_cols=38  Identities=26%  Similarity=0.505  Sum_probs=31.8

Q ss_pred             cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                      ...+|.|.+++.+|+|.|.|.+..........+.|.|.
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            36789999999999999999999877667777777764

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.42  E-value=2.7e-06  Score=55.04  Aligned_cols=32  Identities=16%  Similarity=0.454  Sum_probs=24.8

Q ss_pred             CcceeecCCCceEEEEEeeCCCC-CceeEEeECC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNG  145 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~  145 (291)
                      +....+.+|++++|.|.+ .+.. ...+.||+..
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~Wyrq~   39 (106)
T cd04980           7 PATLSVSPGESATISCKA-SQSVSSNYLAWYQQK   39 (106)
T ss_pred             CCcEEECCCCCEEEEEEE-CCCCCCCcEEEEEEC
Confidence            345788999999999998 4444 5689999843

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.42  E-value=6.7e-06  Score=53.20  Aligned_cols=38  Identities=24%  Similarity=0.438  Sum_probs=32.9

Q ss_pred             cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                      .+.+|.|.+++..|+|.|.|++.+........+.|.|.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            46789999999999999999999888778888888775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd00096 Ig Immunoglobulin domain

Probab=98.41  E-value=3.9e-06  Score=49.63  Aligned_cols=66  Identities=36%  Similarity=0.640  Sum_probs=46.4

Q ss_pred             EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540         20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV   85 (291)
Q Consensus        20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   85 (291)
                      +.|.|.+.+.+...+.|++++.....................+.|.|.+++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999988677889999988766532211111111223455779999999999999999997654

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.38  E-value=2.4e-06  Score=53.74  Aligned_cols=31  Identities=26%  Similarity=0.197  Sum_probs=24.5

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      ...+.+|++|+|.|... . ....+.|+|+|..
T Consensus         9 ~~vV~~G~~VTL~C~~~-~-~~~~f~l~k~g~~   39 (94)
T cd05711           9 SPVVPSGENVTLQCHSD-I-RFDRFILYKEGRS   39 (94)
T ss_pred             CCccCCCCeEEEEEecC-C-CCCEEEEEECCCC
Confidence            35677999999999873 3 5568999998865

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.36  E-value=3.8e-06  Score=54.50  Aligned_cols=88  Identities=19%  Similarity=0.329  Sum_probs=53.7

Q ss_pred             CCccee-ecceeeeecCCcEEEEEEecC-CCC-CeeEEEECCeecCCCeeEeceEEeec---cceEEEEEEeecCCCC-C
Q psy14540          2 HPQLIY-KFIQQTLQPGPPVSLKCIATG-NPT-PHISWKLDGYPLAGDRFVMGQYMSLH---GDVISHVNISSVRVED-S   74 (291)
Q Consensus         2 ~p~~~~-~~~~~~v~~g~~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d-~   74 (291)
                      +|.+.+ .|....+.+++.++|.|.+.+ .|. ..|.|++|+..+..+...........   ....+.|.|...+..+ .
T Consensus         2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~   81 (115)
T cd05769           2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR   81 (115)
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence            675544 344445557788999999998 454 58999999988764321111111111   1233566666655544 4


Q ss_pred             eEEEEEEeCCCCcee
Q psy14540         75 GIYQCTATNRVGSQT   89 (291)
Q Consensus        75 G~y~C~~~~~~~~~~   89 (291)
                      ..|+|.+.+......
T Consensus        82 ~~ytC~V~H~g~~~~   96 (115)
T cd05769          82 NTFTCIVQFYGGTDT   96 (115)
T ss_pred             CeEEEEEEEeCCccc
Confidence            589999987654433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.35  E-value=4e-06  Score=53.38  Aligned_cols=28  Identities=14%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             eecCCCceEEEEEeeCCC--CCceeEEeECC
Q psy14540        117 KVHSGDRAGVQCLVTKGD--PPLTISWLKNG  145 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~--p~~~~~W~~~~  145 (291)
                      .+.+|++++|.|.. ...  ....+.||+..
T Consensus         2 ~v~~G~~v~l~C~~-~~~~~~~~~i~Wy~q~   31 (98)
T cd04984           2 SVSPGETVTITCTG-SSGNISGNYVNWYQQK   31 (98)
T ss_pred             ccCCCCCEEEEEEE-cCCCcCCCCEEEEEEC
Confidence            46789999999998 343  45679999843

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.35  E-value=2.8e-06  Score=54.14  Aligned_cols=80  Identities=18%  Similarity=0.357  Sum_probs=47.8

Q ss_pred             eecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEee-----ccceEEEEEEeecCCCCCeEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSL-----HGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ..|....+..|+.++|.|.+.+ .| ...++|+++|+.+.............     .....+.|.|..-.+.+...|+|
T Consensus         6 ~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC   85 (102)
T cd05768           6 LPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTC   85 (102)
T ss_pred             eCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEE
Confidence            3444444566889999999998 44 45689999999876322111111111     11123456664444445568999


Q ss_pred             EEeCCCC
Q psy14540         80 TATNRVG   86 (291)
Q Consensus        80 ~~~~~~~   86 (291)
                      .+.+...
T Consensus        86 ~V~H~~l   92 (102)
T cd05768          86 VVGHEAL   92 (102)
T ss_pred             EeEeCCC
Confidence            9987543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.34  E-value=5.9e-05  Score=58.90  Aligned_cols=79  Identities=16%  Similarity=0.358  Sum_probs=57.2

Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--ce
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LT  138 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~  138 (291)
                      .|.|..++...+|.|+=.+.+..+.  ..+.+.+.....|...         -....+.+|+...-.|.+.+.+|.  ..
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvs---------v~~~PvL~Ge~Y~AtC~va~YYPp~Sv~  253 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLS---------IRPHAVLEGEPFGATCVAANYYPGDRAA  253 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCccc---------ccCCccccCCCceEEEEeeeecCCCceE
Confidence            4999999999999999987765543  3344555555544211         112356789999999999777774  47


Q ss_pred             eEEeECCEeccC
Q psy14540        139 ISWLKNGLPILS  150 (291)
Q Consensus       139 ~~W~~~~~~~~~  150 (291)
                      +.||.|+.++..
T Consensus       254 lrWf~ng~~V~~  265 (466)
T PHA03270        254 FRWFEGGDEVFA  265 (466)
T ss_pred             EEEEeCCccccC
Confidence            999999998854

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.33  E-value=3.5e-06  Score=53.40  Aligned_cols=93  Identities=14%  Similarity=0.192  Sum_probs=51.7

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  199 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~  199 (291)
                      .|++|+|.|..........+.|++....+.....                  ..   +.......+.  .  ..-.+.+.
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~------------------~~---~~~~~~~~~~--~--f~~R~~~~   57 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPG------------------EE---TAPEIIVTDP--S--YKERVNFS   57 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecC------------------CC---CCCccEEeCC--C--ceeeEEec
Confidence            6999999998743255668999997432211100                  00   0000000000  0  00012223


Q ss_pred             ccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEE
Q psy14540        200 EYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRV  237 (291)
Q Consensus       200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v  237 (291)
                      ....+|.|.+++.+|+|.|.|.+....+. ....+.|.|
T Consensus        58 ~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          58 QNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             CCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            33578999999999999999998877643 345555555

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.29  E-value=5.5e-06  Score=52.77  Aligned_cols=30  Identities=17%  Similarity=0.330  Sum_probs=23.1

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~  145 (291)
                      +.+.+|++++|.|..........+.|++..
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~   31 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWG   31 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence            457789999999998433456789999854

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.29  E-value=6.6e-06  Score=54.20  Aligned_cols=31  Identities=19%  Similarity=0.406  Sum_probs=24.4

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      ..+.+.+|++++|.|..........+.|++.
T Consensus         7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq   37 (116)
T cd07706           7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ   37 (116)
T ss_pred             CceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence            4577889999999999844345678999984

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.28  E-value=6.3e-06  Score=49.64  Aligned_cols=64  Identities=19%  Similarity=0.312  Sum_probs=42.0

Q ss_pred             eeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        116 IKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      ..+..|++++|+|....+ .|.+.++|+..+.....       ....+...|.+..+...|+|.++|.+...
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-------ILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-------eccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            467799999999998433 34559999875433211       01122456777777777777777777654

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.25  E-value=1.8e-05  Score=50.44  Aligned_cols=37  Identities=16%  Similarity=0.245  Sum_probs=29.5

Q ss_pred             cceEEEEeeeecCCCeeEEEEeee-CCccCCceeEEEE
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVASN-TVASDNHSSNLRV  237 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~v  237 (291)
                      .+..|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|
T Consensus        62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            367799999999999999999987 4566666666655

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.24  E-value=2e-05  Score=49.51  Aligned_cols=79  Identities=13%  Similarity=0.194  Sum_probs=45.7

Q ss_pred             ceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEe--eccceEEEEEEeecCCCCCeEEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMS--LHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +.+.+..... .++.++|.|.+.+ .| ...|+|+++|+. ..+.........  ......+.|.+..........|+|+
T Consensus         5 ~~l~~~~~~~-~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~   82 (95)
T cd04985           5 FPLVPCCSSS-SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCK   82 (95)
T ss_pred             EEeCCCcccc-CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEE
Confidence            3444444333 5678999999998 33 567999999997 422111111111  1112235566655444345589999


Q ss_pred             EeCCC
Q psy14540         81 ATNRV   85 (291)
Q Consensus        81 ~~~~~   85 (291)
                      +.+..
T Consensus        83 V~H~~   87 (95)
T cd04985          83 VEHPS   87 (95)
T ss_pred             EEeCC
Confidence            98754

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=98.24  E-value=0.0012  Score=51.27  Aligned_cols=76  Identities=24%  Similarity=0.314  Sum_probs=51.0

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCC-ceEEEEEEeecC-CCCceEEEEECCE
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEG-VRTQVACVVQSG-DLPLSLQWYKNGL  279 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g-~~v~l~C~~~~~-~p~~~v~W~~~~~  279 (291)
                      .++|+|+.+.-.++|-|+|+|...........-|.|.....+.=     ..+| ..-.+.|-+-+. ..++.+.|.-+|.
T Consensus       345 ~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W-----~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV  419 (500)
T PHA02914        345 NSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKW-----NTEGDNETKVACYAAQYDMQPFSILWKSNGV  419 (500)
T ss_pred             hceEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEEEEEE-----EeccCceEEEEEEEEecccCCceeEEEEccE
Confidence            79999999999999999999997765555554555433221110     2233 345688988334 3456899999887


Q ss_pred             Ecc
Q psy14540        280 AIS  282 (291)
Q Consensus       280 ~l~  282 (291)
                      ...
T Consensus       420 ~~~  422 (500)
T PHA02914        420 SFG  422 (500)
T ss_pred             Eec
Confidence            653

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.23  E-value=9.8e-06  Score=50.75  Aligned_cols=30  Identities=20%  Similarity=0.552  Sum_probs=24.4

Q ss_pred             CCCceEEEEEeeCCCCC-ceeEEeECCEecc
Q psy14540        120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPIL  149 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~  149 (291)
                      .++.++|.|.+.+.+|. ..++|+++|..+.
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~   43 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVAT   43 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECc
Confidence            45668999999776775 7899999998863

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.21  E-value=2.7e-05  Score=47.74  Aligned_cols=67  Identities=18%  Similarity=0.333  Sum_probs=44.1

Q ss_pred             cCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccce---EEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540         16 PGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDV---ISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus        16 ~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      .++.++|.|.+.+ .| ...|.|+++|..+........... ..+..   .+.|.+.   ..+...|+|.+.+...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~-~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPP-NSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEE-ETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeeccccc-ccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            4899999999998 44 457999999998875433322221 22222   2444444   5566689999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=98.21  E-value=2.3e-05  Score=49.13  Aligned_cols=75  Identities=8%  Similarity=0.118  Sum_probs=43.5

Q ss_pred             ecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          8 KFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      .|....+..+..++|.|.+.+ .| ...++|.+||..+..+.. ........+  ...+.|.+..-.  ....|+|.+.+
T Consensus         7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~-~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H   83 (96)
T cd07697           7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQ-KSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKH   83 (96)
T ss_pred             CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeE-eccEecCCCEEEEEEEEEECchh--CCCeEEEEEEE
Confidence            344445556788999999998 44 567999999998764321 111111112  112334443321  23359999987


Q ss_pred             CC
Q psy14540         84 RV   85 (291)
Q Consensus        84 ~~   85 (291)
                      ..
T Consensus        84 ~g   85 (96)
T cd07697          84 EG   85 (96)
T ss_pred             CC
Confidence            43

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.20  E-value=3.7e-05  Score=48.26  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=26.9

Q ss_pred             cCCCceEEEEEeeCCCCCc-eeEEeECCEeccCC
Q psy14540        119 HSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSD  151 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~  151 (291)
                      ..|+..+|.|.+.+.+|.. .++|+++|..+...
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~   45 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG   45 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC
Confidence            3578899999997778755 89999999987543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.20  E-value=1.5e-05  Score=50.87  Aligned_cols=34  Identities=29%  Similarity=0.659  Sum_probs=26.4

Q ss_pred             eecCCCceEEEEEeeCCCCC-ceeEEeECCEeccC
Q psy14540        117 KVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILS  150 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~  150 (291)
                      .+..|+.++|.|.+.+.+|. ..++|+++|.++..
T Consensus        12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~   46 (102)
T cd05768          12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK   46 (102)
T ss_pred             HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence            34457889999999766774 47899999998754

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.20  E-value=1.5e-05  Score=49.98  Aligned_cols=35  Identities=20%  Similarity=0.185  Sum_probs=27.4

Q ss_pred             cceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEE
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNL  235 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l  235 (291)
                      .+.+|.|.+++.+|+|.|+|.+...- |...+.+.+
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            36789999999999999999997654 666555544

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PHA03271 envelope glycoprotein C; Provisional

Probab=98.19  E-value=0.00089  Score=52.31  Aligned_cols=81  Identities=25%  Similarity=0.339  Sum_probs=55.2

Q ss_pred             EEEEEeecCCCCCeEEEEEEeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--c
Q psy14540         62 SHVNISSVRVEDSGIYQCTATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--L  137 (291)
Q Consensus        62 ~~l~i~~~~~~d~G~y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~  137 (291)
                      ..|.|.++...++|.|+-...+....  ..+.+.+.+...+..    ..    -....+.+|+...-.|.+.+.+|+  .
T Consensus       207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPs----Vs----V~a~PVL~Ge~YkAtC~vAnYYPP~Sv  278 (490)
T PHA03271        207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPAS----VD----VLAPPVLSGENYKASCIVRHFYPPGSV  278 (490)
T ss_pred             eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCC----cc----ccCCccccCCCceEEEEeeeecCCCce
Confidence            67899999999999876666543322  344455555544310    01    112346689999999999777775  4


Q ss_pred             eeEEeECCEeccC
Q psy14540        138 TISWLKNGLPILS  150 (291)
Q Consensus       138 ~~~W~~~~~~~~~  150 (291)
                      .++|++||.++..
T Consensus       279 rlrWf~nG~~V~~  291 (490)
T PHA03271        279 YVSWRQNGNIATP  291 (490)
T ss_pred             EEEEEeCCccccC
Confidence            7999999988744

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.19  E-value=3e-05  Score=48.78  Aligned_cols=31  Identities=19%  Similarity=0.435  Sum_probs=24.1

Q ss_pred             eeecCCCceEEEEEeeCC-CC-CceeEEeECCE
Q psy14540        116 IKVHSGDRAGVQCLVTKG-DP-PLTISWLKNGL  146 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~-~p-~~~~~W~~~~~  146 (291)
                      ..+..|+..+|.|.+.+. +| ...++|.++++
T Consensus         9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~   41 (96)
T cd07696           9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG   41 (96)
T ss_pred             HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence            345568999999999666 46 45899999875

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.19  E-value=1.4e-05  Score=52.44  Aligned_cols=94  Identities=22%  Similarity=0.382  Sum_probs=49.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+++.|.|..........+.|++....  ............  ....  .......+.+..           
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~--~~~~~i~~~~~~--~~~~--~~~~~~~~r~~~-----------   70 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPG--QGPQLIIRYSLS--STNE--TPTPSYSGRFTF-----------   70 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETT--SEEEEEEEEETT--EEEE--EEETTETTTEEE-----------
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECcc--ccceeeeeeccc--eeee--ccccceeeeeee-----------
Confidence            34578889999999999952345568999983320  000000000000  0000  000000111111           


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT  225 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  225 (291)
                        .........+|.|.++..+|+|.|.|.+...
T Consensus        71 --~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   71 --SGNGSQNNFSLTIKNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             --EEETTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred             --eecccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence              1111233678999999999999999988876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>KOG1480|consensus

Probab=98.17  E-value=1.6e-06  Score=71.98  Aligned_cols=202  Identities=24%  Similarity=0.323  Sum_probs=111.9

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeE-eceEEee--ccceEEEEEEeecCCCCCe---E
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFV-MGQYMSL--HGDVISHVNISSVRVEDSG---I   76 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~--~~~~~~~l~i~~~~~~d~G---~   76 (291)
                      |.|+..|.+..+..|..+.|.|.+..  .+++...-++..+...+.. .......  .......+.|.....++.+   .
T Consensus        25 ~~~~~~p~~~yii~~~p~~l~c~a~~--a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d  102 (909)
T KOG1480|consen   25 PHFTTEPKSAYIIKNKPLRLQCKANP--ATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPED  102 (909)
T ss_pred             ceeeecCCccceecCCCccceecCCc--ccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccc
Confidence            67888899999999999999998854  3333322233222211100 0000000  0111122344444444433   5


Q ss_pred             EEEE--EeCCCCcee-eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCc
Q psy14540         77 YQCT--ATNRVGSQT-HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE  153 (291)
Q Consensus        77 y~C~--~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~  153 (291)
                      |.|+  +....|... ....+.+...      .......+.-..+..+..+++.|....+.|...+.|++++..+.....
T Consensus       103 ~~cQc~a~~~~g~~~s~~a~vr~ay~------rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n  176 (909)
T KOG1480|consen  103 YWCQCVAWSDDGTVKSRKATVRIAYL------RKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDAN  176 (909)
T ss_pred             eeeeeeeecCCCcchhhhHHHHHHHH------HHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCcccc
Confidence            7776  443344111 0000011000      011112333456778888999999888899999999999988776333


Q ss_pred             eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc-eEEEEeccceEEEEeeeecCCCeeEEEEee
Q psy14540        154 ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS-SNLRVNEYTSSLSIATLSTGHSGNYTCVAS  223 (291)
Q Consensus       154 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~  223 (291)
                      ....    ....+.+..+...|.|.|+|.+.|-.+..... ..+       .+.+......+.-.|.|.+.
T Consensus       177 ~~~~----~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v-------~vyv~ggwsswt~w~~c~~r  236 (909)
T KOG1480|consen  177 VIRA----SDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATV-------QVYVNGGWSEWTEWSTCNVR  236 (909)
T ss_pred             chhh----hcCCccccchhhhhcccceeeeehhhccccccceEE-------EEEEcCcccccccceeeeec
Confidence            2222    13458899999999999999999987755432 222       23333444455555655544

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.17  E-value=1.5e-05  Score=51.60  Aligned_cols=28  Identities=18%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             eecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      .+++|+.++|.|.+........+.||+.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq   29 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRW   29 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEE
Confidence            4678999999999843234558999984

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.16  E-value=7.9e-06  Score=51.39  Aligned_cols=78  Identities=19%  Similarity=0.217  Sum_probs=45.5

Q ss_pred             eecceeeeecCCcEEEEEEecCC--C-CCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeEEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGN--P-TPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~--~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ..|....+..|+.++|.|.+.+.  | ...++|.|++.........  ......+.   ..+.|.+..-.+.+.-.|+|.
T Consensus         4 ~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~--~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~   81 (96)
T cd07696           4 LPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ--PPESHNNATLSVTSTLNVSTDDWISGDTFQCK   81 (96)
T ss_pred             cCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec--ccccCCCCCEEEEEEEEeCHHHccCCCcEEEE
Confidence            44555557779999999999986  3 4568999987533211111  11111111   224455554444444589999


Q ss_pred             EeCCCC
Q psy14540         81 ATNRVG   86 (291)
Q Consensus        81 ~~~~~~   86 (291)
                      +.+...
T Consensus        82 V~H~~l   87 (96)
T cd07696          82 VTHPDL   87 (96)
T ss_pred             EECCCC
Confidence            987653

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.13  E-value=7.7e-06  Score=51.02  Aligned_cols=28  Identities=32%  Similarity=0.818  Sum_probs=24.8

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPI  148 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~  148 (291)
                      |+.+.|.|.+..++|.+.+.|+.++..+
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~   41 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPV   41 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence            7799999998899999999999998776

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=98.10  E-value=4.1e-05  Score=49.00  Aligned_cols=76  Identities=14%  Similarity=0.156  Sum_probs=50.5

Q ss_pred             eeecceeeeecCCcEEEEEEecCC--CC-CeeEEEECCe-ecC-------CCeeE---ec--eEEeeccceEEEEEEeec
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGN--PT-PHISWKLDGY-PLA-------GDRFV---MG--QYMSLHGDVISHVNISSV   69 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~--~~-~~v~W~~~~~-~~~-------~~~~~---~~--~~~~~~~~~~~~l~i~~~   69 (291)
                      ..++....+..|..++|.|.+.+.  .. ..+.|+|... .++       .+.+.   ..  .-..........|++.++
T Consensus         2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L   81 (115)
T cd05721           2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL   81 (115)
T ss_pred             eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC
Confidence            456677789999999999999763  33 5689998321 211       01111   01  112233445688999999


Q ss_pred             CCCCCeEEEEEE
Q psy14540         70 RVEDSGIYQCTA   81 (291)
Q Consensus        70 ~~~d~G~y~C~~   81 (291)
                      +.+|++.|.|..
T Consensus        82 ~a~DTa~Y~Ca~   93 (115)
T cd05721          82 RANQTDIYFCKI   93 (115)
T ss_pred             CHHHCeEEEEEe
Confidence            999999999976

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.09  E-value=5e-05  Score=47.35  Aligned_cols=30  Identities=37%  Similarity=0.564  Sum_probs=24.6

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEecc
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPIL  149 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~  149 (291)
                      .|+..+|.|.+.+.+| ...++|.+||..+.
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~   44 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP   44 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence            4666789999976677 56899999999876

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PHA03273 envelope glycoprotein C; Provisional

Probab=98.07  E-value=0.00046  Score=54.68  Aligned_cols=79  Identities=22%  Similarity=0.330  Sum_probs=55.8

Q ss_pred             EEEEEeecCCCCCeEEEEEEeCCCCcee--eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--c
Q psy14540         62 SHVNISSVRVEDSGIYQCTATNRVGSQT--HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--L  137 (291)
Q Consensus        62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~  137 (291)
                      ..|.|..++...+|.|+=.+.+..+...  ..+.+.....|...         -....+.+|+...-.|.+.+.+|.  .
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvs---------v~~~PvL~Ge~y~A~C~aa~YYPp~Sv  268 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVD---------LSVHPSLKGENYRAVCVVASYFPHSSV  268 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCccc---------ccCCccccCCCceEEEEeeeecCCCce
Confidence            5699999999999999866555444433  33344445544211         122456789999999999777774  4


Q ss_pred             eeEEeECCEecc
Q psy14540        138 TISWLKNGLPIL  149 (291)
Q Consensus       138 ~~~W~~~~~~~~  149 (291)
                      .+.|+.|+.++.
T Consensus       269 ~~rWf~dg~~V~  280 (486)
T PHA03273        269 KLRWYKNAKEVD  280 (486)
T ss_pred             EEEEEeCCeecc
Confidence            799999999886

>smart00406 IGv Immunoglobulin V-Type

Probab=98.07  E-value=1.3e-05  Score=48.99  Aligned_cols=63  Identities=30%  Similarity=0.493  Sum_probs=38.6

Q ss_pred             cEEEEEEecCCCC--CeeEEEECCe--ec---C--C---CeeE----eceEEee-c-cceEEEEEEeecCCCCCeEEEEE
Q psy14540         19 PVSLKCIATGNPT--PHISWKLDGY--PL---A--G---DRFV----MGQYMSL-H-GDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus        19 ~v~l~C~~~~~~~--~~v~W~~~~~--~~---~--~---~~~~----~~~~~~~-~-~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ++.|.|.+.....  ..+.|++...  ..   .  .   ..+.    ..+.... . ....++|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4789999886433  3799998432  11   0  0   0000    0111111 1 24568899999999999999996


Q ss_pred             E
Q psy14540         81 A   81 (291)
Q Consensus        81 ~   81 (291)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            4

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.05  E-value=0.00013  Score=45.67  Aligned_cols=31  Identities=35%  Similarity=0.765  Sum_probs=24.7

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEeccC
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILS  150 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~  150 (291)
                      .++..+|.|.+.+.+| ...++|.+||..+..
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~   45 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTD   45 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccC
Confidence            3566799999977777 468999999988754

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd00096 Ig Immunoglobulin domain

Probab=98.05  E-value=3.7e-05  Score=45.24  Aligned_cols=63  Identities=43%  Similarity=0.771  Sum_probs=37.7

Q ss_pred             eEEEEEeeCCCCCceeEEeECCEeccCCCce---EEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEI---TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      +.|.|.+ .+.+...+.|++++.........   ...........|.+..+...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLA-SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEe-cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            4689999 45778899999988766443321   111111224456666666666666666665543

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.05  E-value=5.2e-05  Score=46.52  Aligned_cols=33  Identities=33%  Similarity=0.658  Sum_probs=26.9

Q ss_pred             cCCCceEEEEEeeCCCCC-ceeEEeECCEeccCC
Q psy14540        119 HSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD  151 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~  151 (291)
                      ..++.++|.|.+.+.+|. ..|.|+++|..+...
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~   39 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEG   39 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTT
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEeccceeeee
Confidence            348899999999777884 489999999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.04  E-value=3e-05  Score=50.37  Aligned_cols=35  Identities=26%  Similarity=0.510  Sum_probs=27.6

Q ss_pred             eecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCC
Q psy14540        117 KVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD  151 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~  151 (291)
                      .+.+++.++|.|.+.+.+|. ..+.|++|+..+...
T Consensus        14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g   49 (115)
T cd05769          14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDG   49 (115)
T ss_pred             HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCC
Confidence            34456789999999777886 589999999887643

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PHA03270 envelope glycoprotein C; Provisional

Probab=98.04  E-value=0.0007  Score=53.15  Aligned_cols=81  Identities=17%  Similarity=0.264  Sum_probs=64.5

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCC--ceEEEEEC
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP--LSLQWYKN  277 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~--~~v~W~~~  277 (291)
                      ...|.|..++...+|.|+=..-+..+  .....+.+..+.+|.+.+.+.. +.+|+...-+|.+-..+|+  ..+.||+|
T Consensus       181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P-vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n  259 (466)
T PHA03270        181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA-VLEGEPFGATCVAANYYPGDRAAFRWFEG  259 (466)
T ss_pred             cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc-cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            56699999999999999988766553  3445567777788887776554 6799999999999666775  58999999


Q ss_pred             CEEccC
Q psy14540        278 GLAISQ  283 (291)
Q Consensus       278 ~~~l~~  283 (291)
                      |.++..
T Consensus       260 g~~V~~  265 (466)
T PHA03270        260 GDEVFA  265 (466)
T ss_pred             CccccC
Confidence            999864

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.03  E-value=6.7e-05  Score=49.59  Aligned_cols=33  Identities=18%  Similarity=0.288  Sum_probs=23.5

Q ss_pred             CcceeecCCCceEEEEEeeCCC-----CCceeEEeECC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGD-----PPLTISWLKNG  145 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~-----p~~~~~W~~~~  145 (291)
                      +..+.+.+|+.++|.|......     ....+.||+..
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~   43 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH   43 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence            3446788999999999873221     13569999854

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.01  E-value=9.6e-05  Score=46.37  Aligned_cols=80  Identities=16%  Similarity=0.244  Sum_probs=44.6

Q ss_pred             ceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ...++............+.|.+.+ +|.+.|+|+++.   .... .........+  ...+.|.+......|...|+|++
T Consensus         3 ~~~~~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~~---~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v   78 (95)
T cd05719           3 NSAEAGPVALGGEPVTVATCVSANGKPPATISWETTL---GGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVV   78 (95)
T ss_pred             cccceeccccCCCccEEEEEECCCCcCCCEEEEEeCC---CCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEE
Confidence            333443333333455678999864 999999999972   1110 1111111111  23456666554444555999999


Q ss_pred             eCCCCce
Q psy14540         82 TNRVGSQ   88 (291)
Q Consensus        82 ~~~~~~~   88 (291)
                      .+.....
T Consensus        79 ~h~~l~~   85 (95)
T cd05719          79 SHPTLQE   85 (95)
T ss_pred             eCcccCC
Confidence            8776443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.00  E-value=0.00011  Score=46.12  Aligned_cols=27  Identities=22%  Similarity=0.448  Sum_probs=22.1

Q ss_pred             CCceEEEEEeeCCCCCc-eeEEeECCEe
Q psy14540        121 GDRAGVQCLVTKGDPPL-TISWLKNGLP  147 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~-~~~W~~~~~~  147 (291)
                      ++.++|.|.+.+.+|.. .++|+++|+.
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~   41 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGED   41 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEE
Confidence            67899999996556754 9999999864

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=98.00  E-value=0.00013  Score=45.67  Aligned_cols=23  Identities=30%  Similarity=0.705  Sum_probs=20.0

Q ss_pred             CceEEEEEeeCCCCCceeEEeEC
Q psy14540        122 DRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       122 ~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      ..+.+.|.+.+++|...|+|+++
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~   38 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSST   38 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcC
Confidence            34678999988999999999987

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA02982 hypothetical protein; Provisional

Probab=98.00  E-value=0.0007  Score=47.67  Aligned_cols=122  Identities=16%  Similarity=0.266  Sum_probs=73.2

Q ss_pred             eeeeecCCcEEEEEEecC-CCCCeeEEEECC-eecC---CCeeEe-----------ceEEeeccceEEEEEEeecCCCCC
Q psy14540         11 QQTLQPGPPVSLKCIATG-NPTPHISWKLDG-YPLA---GDRFVM-----------GQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~-~~~~---~~~~~~-----------~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      ++....|++|.|.|.+.. ....+..|+++. ..+.   .+...+           .......+...++|+|.++..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            445678999999999765 445568998743 2222   111111           112223344568999999999999


Q ss_pred             eEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCc-eEEEEEeeCCCCCceeEEeECCE
Q psy14540         75 GIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR-AGVQCLVTKGDPPLTISWLKNGL  146 (291)
Q Consensus        75 G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~~~p~~~~~W~~~~~  146 (291)
                      |-|+|++....+. ......+.|+...      .       ...+.++.+ ..+.|-+ ..+..+-..|..+|-
T Consensus       113 GCYtc~~ks~~~k~E~c~kCl~V~~~~------V-------~~~W~e~nNeT~V~CyV-gS~~~dvp~W~V~GV  172 (251)
T PHA02982        113 GCFTCEAKDAEGKEETCEKCLEIQKED------I-------LYVVEEHNNETIITCFV-GSKHGDVPRFIVAGI  172 (251)
T ss_pred             CceEEEEecCCCchheeheeeeEecce------E-------EEEEEecCCeEEEEEEE-EeccCCCccEEEeeE
Confidence            9999999865544 3335556663321      0       123334444 4579987 343333338887664

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.97  E-value=4.9e-05  Score=48.87  Aligned_cols=28  Identities=25%  Similarity=0.516  Sum_probs=21.5

Q ss_pred             eecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~  145 (291)
                      .+.+|+.++|.|.. .......+.||+..
T Consensus         2 ~v~~G~~vtL~C~~-~~~~~~~v~Wyrq~   29 (104)
T cd05720           2 DAELGQKVELKCEV-LNSSPTGCSWLFQP   29 (104)
T ss_pred             cccCCCeEEEEEEe-cCCCCCcEEEEEeC
Confidence            35689999999998 34445679999854

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.94  E-value=2.3e-05  Score=49.16  Aligned_cols=82  Identities=21%  Similarity=0.282  Sum_probs=47.9

Q ss_pred             CCcce-eecceeeeecCCcEEEEEEecC-C-C-CCeeEEEECCeecCCCeeEeceEEee--ccceEEEEEEeecCCCCCe
Q psy14540          2 HPQLI-YKFIQQTLQPGPPVSLKCIATG-N-P-TPHISWKLDGYPLAGDRFVMGQYMSL--HGDVISHVNISSVRVEDSG   75 (291)
Q Consensus         2 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G   75 (291)
                      +|.+. ..|....+..+..++|.|.+.+ . | ...|+|.++|.. . . .........  .....+.|.+..-.+....
T Consensus         3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~   79 (99)
T cd04986           3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-A-VQTSAESDQCGCYSVSSVLPGCAEEWNKGE   79 (99)
T ss_pred             CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C-c-EEcCcccCCCCCEEEEEEEEeCHHHhcCCC
Confidence            35443 3344445667899999999998 4 4 467999999875 2 1 111111111  1123355666544444444


Q ss_pred             EEEEEEeCCCC
Q psy14540         76 IYQCTATNRVG   86 (291)
Q Consensus        76 ~y~C~~~~~~~   86 (291)
                      .|+|.+.+...
T Consensus        80 ~ytC~V~H~~l   90 (99)
T cd04986          80 PFACTVTHPEG   90 (99)
T ss_pred             eEEEEEECCCc
Confidence            79999987654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.94  E-value=0.00017  Score=45.16  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=41.9

Q ss_pred             CCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540         17 GPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTATNRVGSQTHS   91 (291)
Q Consensus        17 g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   91 (291)
                      ...+.+.|.+.+ .|...|+|+++........    ......+  ...+.|.+......|...|+|++.+........
T Consensus        15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~----~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~   88 (95)
T cd07703          15 IPVPVAKCVSANGRPPARISWSSTLGGNANTT----SKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQL   88 (95)
T ss_pred             CccEEEEEEcCCCCCCcEEEEEcCCCCCeeEE----EEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence            345778998875 8999999998722111111    1111112  224567665555555559999999876544333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.91  E-value=0.00023  Score=44.68  Aligned_cols=23  Identities=35%  Similarity=0.728  Sum_probs=20.2

Q ss_pred             CceEEEEEeeCCCCCceeEEeEC
Q psy14540        122 DRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       122 ~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      ....+.|.+.+|+|.+.|+|+++
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~   38 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETT   38 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeC
Confidence            45678999988999999999986

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.87  E-value=0.00024  Score=44.36  Aligned_cols=33  Identities=21%  Similarity=0.573  Sum_probs=27.8

Q ss_pred             CcceeecCCCceEE-EEEeeCCCCCceeEEeECC
Q psy14540        113 SRSIKVHSGDRAGV-QCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus       113 ~~~~~~~~g~~~~l-~C~~~~~~p~~~~~W~~~~  145 (291)
                      .....+.+|+.+.+ .|.+..++|.+.++|+.+.
T Consensus         8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~   41 (97)
T cd07704           8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNV   41 (97)
T ss_pred             CCeeEeecCcceeEEEEEccCCccCCEeEEeCCC
Confidence            34467778999999 9999899999999999753

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.84  E-value=0.00012  Score=45.34  Aligned_cols=77  Identities=22%  Similarity=0.346  Sum_probs=46.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CCC--CeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCe-EE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPT--PHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG-IY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y   77 (291)
                      +|.|...+   .+.+|..+++.|.+.+ .|.  ..+.|+++...+....+...............+++.- +.+|.| .|
T Consensus         3 ~p~i~~~~---~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~f   78 (99)
T cd07689           3 DPEILLSG---PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVL   78 (99)
T ss_pred             CccCcccC---cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEE
Confidence            34544443   3589999999999986 444  6699998776665333221111111112223455544 477777 99


Q ss_pred             EEEEe
Q psy14540         78 QCTAT   82 (291)
Q Consensus        78 ~C~~~   82 (291)
                      +|++.
T Consensus        79 sC~A~   83 (99)
T cd07689          79 VCRAK   83 (99)
T ss_pred             EEEEE
Confidence            99986

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.83  E-value=0.00016  Score=47.53  Aligned_cols=32  Identities=16%  Similarity=0.354  Sum_probs=23.1

Q ss_pred             CcceeecCCCceEEEEEeeCCC-CCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGD-PPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~  144 (291)
                      +....+.+|++++|.|...... ....+.||+.
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ   36 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ   36 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence            3446788999999999873222 2457999984

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.82  E-value=0.00039  Score=43.61  Aligned_cols=33  Identities=15%  Similarity=0.362  Sum_probs=25.8

Q ss_pred             ecCCCceEEEEEeeCCCC-CceeEEeECCEeccC
Q psy14540        118 VHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS  150 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~  150 (291)
                      +..++.++|.|.+.+.+| ...++|.+||..+..
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~   46 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL   46 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence            334677899999977677 458999999998754

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.79  E-value=0.00023  Score=44.66  Aligned_cols=28  Identities=32%  Similarity=0.551  Sum_probs=23.0

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEe
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLP  147 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~  147 (291)
                      .++.++|.|.+.+.+| ...|+|++||..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            4567899999976677 458999999987

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.79  E-value=0.00036  Score=43.62  Aligned_cols=74  Identities=15%  Similarity=0.212  Sum_probs=45.6

Q ss_pred             eeeecCCcEEE-EEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540         12 QTLQPGPPVSL-KCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        12 ~~v~~g~~v~l-~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      ..+.+|+.+.+ .|.+.+ .|.+.|+|+.+......  ..........-...+.+.+......|.-.++|.+.+....
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~--~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~   86 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE--SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ   86 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc--eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence            45778999999 998875 89999999976332221  1000000111123356666555555666999999876543

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.76  E-value=0.00015  Score=45.55  Aligned_cols=31  Identities=19%  Similarity=0.427  Sum_probs=24.3

Q ss_pred             eecCCCceEEEEEeeCCC-C-CceeEEeECCEe
Q psy14540        117 KVHSGDRAGVQCLVTKGD-P-PLTISWLKNGLP  147 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~-p-~~~~~W~~~~~~  147 (291)
                      .+..++.++|.|.+.+.+ | ...|.|.++|..
T Consensus        15 ~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986          15 DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            344678899999997666 6 468999999875

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=97.68  E-value=0.00036  Score=43.33  Aligned_cols=35  Identities=29%  Similarity=0.345  Sum_probs=27.4

Q ss_pred             eecCCCceEEEEEeeCCCCC--ceeEEeECCEeccCC
Q psy14540        117 KVHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSD  151 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~~~  151 (291)
                      .+.+|..+++.|.+.+.+|.  ..+.|+++...+...
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~   47 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK   47 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceeccc
Confidence            34789999999999777876  689999876665443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.66  E-value=0.0002  Score=40.51  Aligned_cols=51  Identities=27%  Similarity=0.483  Sum_probs=35.0

Q ss_pred             eecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540         14 LQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        14 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      -..|.+|+|+|.....   .+.|+++++.+....              ..+.+.+-. ++.|.|+|.+.
T Consensus         4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~~--------------~~~~~~~~~-e~~G~Y~C~~~   54 (65)
T cd07692           4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD--------------EKYLSLNHF-SSSGYYHCTAD   54 (65)
T ss_pred             EEeccEEEEECCCCCC---CceEEeCCccCCCCC--------------ceEEeeccC-CCCceEEEEeC
Confidence            3579999999986532   399999986555211              013344444 88999999985

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.59  E-value=0.00028  Score=42.91  Aligned_cols=22  Identities=32%  Similarity=0.614  Sum_probs=18.5

Q ss_pred             cceEEEEeeeecCCCeeEEEEe
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVA  222 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~  222 (291)
                      ....|.|.+++.+|+|.|.|.+
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       60 NDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             CEEEEEEcCCCHHHCEEEEEcC
Confidence            3567999999999999999964

>PHA02633 hypothetical protein; Provisional

Probab=97.51  E-value=0.0004  Score=38.53  Aligned_cols=38  Identities=26%  Similarity=0.309  Sum_probs=31.6

Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCC
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      .|.|-++..+|+|.|.|.+.+..-....++.++|....
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            38899999999999999999877777777788876543

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.48  E-value=0.00033  Score=39.69  Aligned_cols=50  Identities=30%  Similarity=0.453  Sum_probs=32.4

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN  185 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  185 (291)
                      .|..|+|+|... +   ..+.|.+++..+...           ...+.+.+-. ++.|.|.|.+.+
T Consensus         6 sGTtVtlTCP~~-~---~~i~W~~n~~~~~g~-----------~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           6 SGTTVTVTCPLS-G---DDIKWKKNDQVSQGS-----------DEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             eccEEEEECCCC-C---CCceEEeCCccCCCC-----------CceEEeeccC-CCCceEEEEeCC
Confidence            689999999862 2   239999998655432           1123333444 778888887753

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.48  E-value=0.015  Score=45.80  Aligned_cols=79  Identities=13%  Similarity=0.235  Sum_probs=46.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC--CCeeEEEECCeecCCCeeEeceE-Eeec-c--ceEEEEEEeecCCCCC
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP--TPHISWKLDGYPLAGDRFVMGQY-MSLH-G--DVISHVNISSVRVEDS   74 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~~~~~~-~~~~-~--~~~~~l~i~~~~~~d~   74 (291)
                      ||.+.+.+.+  +.+|+...-.|.+.. .|  ...+.|+.||..+.......... .... +  ...++|.+.+...+..
T Consensus       247 PPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~P  324 (490)
T PHA03271        247 PASVDVLAPP--VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPP  324 (490)
T ss_pred             CCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCC
Confidence            5666666644  889999999999987 44  34599999998876322211111 0011 1  1234454444322333


Q ss_pred             eEEEEEEe
Q psy14540         75 GIYQCTAT   82 (291)
Q Consensus        75 G~y~C~~~   82 (291)
                      -..+|.+.
T Consensus       325 PsLRCeV~  332 (490)
T PHA03271        325 PKISCLVA  332 (490)
T ss_pred             CCceEEEE
Confidence            47899976

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.46  E-value=0.00013  Score=47.94  Aligned_cols=81  Identities=12%  Similarity=0.227  Sum_probs=46.4

Q ss_pred             ecCCcEEEEEEecC---C--CCCeeEEEECCeecC-----CCeeE----eceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540         15 QPGPPVSLKCIATG---N--PTPHISWKLDGYPLA-----GDRFV----MGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus        15 ~~g~~v~l~C~~~~---~--~~~~v~W~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .-.++|.|+|.+..   .  +...|.|..++..+-     .....    .+.....-..+.++|.+...+.- .|+|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            45789999999975   1  234499999888654     11110    00111222345577888876555 8999999


Q ss_pred             EeCCCCceeeeeeEEE
Q psy14540         81 ATNRVGSQTHSADMRV   96 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v   96 (291)
                      +..........+.|..
T Consensus       104 Vt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen  104 VTELSREGETTIELKY  119 (130)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEecCCCceEEEEEEE
Confidence            9876666666666655

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02982 hypothetical protein; Provisional

Probab=97.37  E-value=0.0027  Score=44.85  Aligned_cols=137  Identities=17%  Similarity=0.246  Sum_probs=75.9

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC-CCCCce
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA-SDNHSS  194 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~~  194 (291)
                      +....++.|.|.|....+.--.+..|+.+......       ..               ..|.+..-+.|-.. .-....
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la-------~~---------------~~~~~~iN~~~y~~~~~kd~y   91 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLA-------QE---------------ANGGTGINAFNYVPGPYKDKY   91 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEE-------ee---------------ecCcceeccccccCCccceeE
Confidence            45567999999999865555667899875421110       00               00111111111111 112223


Q ss_pred             EEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCc-eeEEEEecCCCCCCCCcccccCC-ceEEEEEEeecCCCCceE
Q psy14540        195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH-SSNLRVNVPPHIGPFTFGELMEG-VRTQVACVVQSGDLPLSL  272 (291)
Q Consensus       195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~-~~~l~v~~~p~~~~~~~~~~~~g-~~v~l~C~~~~~~p~~~v  272 (291)
                      .+.++...++|+|+.++.++.|-|+|.+....+.... ..-|.|.....+.     ...++ ..-.++|-+ +..-.+-.
T Consensus        92 ~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-----~W~e~nNeT~V~CyV-gS~~~dvp  165 (251)
T PHA02982         92 ALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILY-----VVEEHNNETIITCFV-GSKHGDVP  165 (251)
T ss_pred             EEEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEE-----EEEecCCeEEEEEEE-EeccCCCc
Confidence            4556667899999999999999999999876643332 3344442111100     01222 345689988 43332223


Q ss_pred             EEEECCEE
Q psy14540        273 QWYKNGLA  280 (291)
Q Consensus       273 ~W~~~~~~  280 (291)
                      .|.-+|..
T Consensus       166 ~W~V~GVv  173 (251)
T PHA02982        166 RFIVAGIV  173 (251)
T ss_pred             cEEEeeEE
Confidence            89988764

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.29  E-value=0.0015  Score=37.33  Aligned_cols=60  Identities=23%  Similarity=0.452  Sum_probs=38.8

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v   96 (291)
                      .+.|.|.|...    ..|.|++ |..+....             ..+|.+.....+-.|.|.|.+.+    ......|.|
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~-------------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQV   63 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEVS-------------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQV   63 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Cccccccc-------------ccEEeccCcccCCCcceEecCcc----CCCcEEEEE
Confidence            46799999652    4699999 54433111             13366777778889999998864    234445555


Q ss_pred             Ec
Q psy14540         97 YD   98 (291)
Q Consensus        97 ~~   98 (291)
                      ..
T Consensus        64 yY   65 (69)
T cd07691          64 YY   65 (69)
T ss_pred             EE
Confidence            43

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.29  E-value=0.0014  Score=37.40  Aligned_cols=50  Identities=26%  Similarity=0.477  Sum_probs=28.3

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN  185 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  185 (291)
                      ..+.|.|+|.+ .    .+|.|++ |..+....          ...+.+.....+..|.|.|.+++
T Consensus         5 ~~~~V~L~C~~-~----tsi~W~k-G~~~~~~~----------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG-A----TNITWKK-GKEILEVS----------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC-C----CcEEEec-Cccccccc----------ccEEeccCcccCCCcceEecCcc
Confidence            34579999975 1    4699999 55443221          12344444555555555554433

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=97.27  E-value=0.033  Score=43.75  Aligned_cols=125  Identities=20%  Similarity=0.370  Sum_probs=76.7

Q ss_pred             ceeeeecCCcEEEEEEecC---CCCCeeEEEECCeecC------------------CCeeEeceEEee-ccceEEEEEEe
Q psy14540         10 IQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPLA------------------GDRFVMGQYMSL-HGDVISHVNIS   67 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~------------------~~~~~~~~~~~~-~~~~~~~l~i~   67 (291)
                      ....+..|..|.|.|.+.-   .....+.|+-.|-++.                  ...+.+...... .+-..++|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            3456777999999999873   3455689986543332                  122222222111 12234889999


Q ss_pred             ecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeec-CCCc-eEEEEEeeCC-CCCceeEEeEC
Q psy14540         68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH-SGDR-AGVQCLVTKG-DPPLTISWLKN  144 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~l~C~~~~~-~p~~~~~W~~~  144 (291)
                      ++...++|-|+|++............|.|....        .      .... +|.. ..+.|-+... ..++.+.|..+
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V--------~------f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvn  417 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADHV--------F------FKWNTEGDNETKVACYAAQYDMQPFSILWKSN  417 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEeccEE--------E------EEEEeccCceEEEEEEEEecccCCceeEEEEc
Confidence            999999999999997654445555555554311        0      1111 4444 3468987444 34567999988


Q ss_pred             CEec
Q psy14540        145 GLPI  148 (291)
Q Consensus       145 ~~~~  148 (291)
                      |...
T Consensus       418 GV~~  421 (500)
T PHA02914        418 GVSF  421 (500)
T ss_pred             cEEe
Confidence            7554

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.21  E-value=0.0034  Score=49.98  Aligned_cols=79  Identities=20%  Similarity=0.266  Sum_probs=60.5

Q ss_pred             eEEEEeeeecCCCeeEEEEeeeCCccCC--ceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCC--ceEEEEECC
Q psy14540        203 SSLSIATLSTGHSGNYTCVASNTVASDN--HSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP--LSLQWYKNG  278 (291)
Q Consensus       203 ~~l~i~~~~~~~~g~y~C~~~~~~~~~~--~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~--~~v~W~~~~  278 (291)
                      ..|.|..++...+|.|+=...+..+...  ..+.+....+|.+.+.+.. +.+|+...-+|.+-..+|+  ..+.|++||
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P-vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg  276 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP-SLKGENYRAVCVVASYFPHSSVKLRWYKNA  276 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc-cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            5699999999999999866545434333  4444445778887766544 6799999999999666675  589999999


Q ss_pred             EEcc
Q psy14540        279 LAIS  282 (291)
Q Consensus       279 ~~l~  282 (291)
                      .++.
T Consensus       277 ~~V~  280 (486)
T PHA03273        277 KEVD  280 (486)
T ss_pred             eecc
Confidence            9997

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.17  E-value=0.0029  Score=50.65  Aligned_cols=81  Identities=21%  Similarity=0.249  Sum_probs=61.9

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCC---ccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCC--ceEEEEE
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTV---ASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP--LSLQWYK  276 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~---~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~--~~v~W~~  276 (291)
                      ...|.|..++..++|.|.=++.+..   ......+.|.+..+|.+.+.+.. +.+|+...-+|.+-..+|+  ..+.|++
T Consensus       288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P-VL~Ge~YkAtC~vA~YYPp~SvrlrWf~  366 (566)
T PHA03269        288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP-VLLGNPYAAYCKVNKYYPPHSVIVKWTS  366 (566)
T ss_pred             ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc-cccCCCceEEEEeeeecCCCceEEEEEe
Confidence            4568999999999999986654322   23446667777788877665544 6799999999999666775  5899999


Q ss_pred             CCEEccC
Q psy14540        277 NGLAISQ  283 (291)
Q Consensus       277 ~~~~l~~  283 (291)
                      ||.++..
T Consensus       367 ng~~V~~  373 (566)
T PHA03269        367 NFGNIGK  373 (566)
T ss_pred             CCcccCc
Confidence            9998874

>KOG0613|consensus

Probab=97.11  E-value=0.0043  Score=55.71  Aligned_cols=179  Identities=11%  Similarity=0.027  Sum_probs=97.7

Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCC--C----------cccceeccCCcceeecCCCceEEEEEe
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQ--P----------QDVKLVTSNSRSIKVHSGDRAGVQCLV  130 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~--~----------~~~~~~~~~~~~~~~~~g~~~~l~C~~  130 (291)
                      +..|.+....+.+.|+|......+.....+...+......  |          ............+....+..+++.|..
T Consensus       279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~  358 (1205)
T KOG0613|consen  279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL  358 (1205)
T ss_pred             cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc
Confidence            3556777777788888888766665544443333221111  0          000111122223445566778888887


Q ss_pred             eCCCCCce-eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEee
Q psy14540        131 TKGDPPLT-ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIAT  209 (291)
Q Consensus       131 ~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~  209 (291)
                       .+.+.+. +.|++++..............                                      -......+.+..
T Consensus       359 -~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~ts~~~~~~~  399 (1205)
T KOG0613|consen  359 -SGTQKPDEAQGYHGEEVSSESLGALPCPV--------------------------------------GTVTSHTYTIKD  399 (1205)
T ss_pred             -cCCcCCchheeeccccccccccccccccc--------------------------------------ccccCcchhhhh
Confidence             5666554 889887654433221100000                                      001133566677


Q ss_pred             eecCCCeeEEEEeeeCCccCCceeEEEEec------CCCCCCCCccc--ccCCceEEEEEEeecCCC--CceEEEEECCE
Q psy14540        210 LSTGHSGNYTCVASNTVASDNHSSNLRVNV------PPHIGPFTFGE--LMEGVRTQVACVVQSGDL--PLSLQWYKNGL  279 (291)
Q Consensus       210 ~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~------~p~~~~~~~~~--~~~g~~v~l~C~~~~~~p--~~~v~W~~~~~  279 (291)
                      +...+.+.|.|.|.|..+.....-...+..      ++.+.......  ...-+.+.+.|.+ .+.+  ..+++|++++-
T Consensus       400 ~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~-~s~~~~~~~~tt~~~~~  478 (1205)
T KOG0613|consen  400 AGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPD-SSTSMPMTTVTTIKDGL  478 (1205)
T ss_pred             cCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCC-CCccccceeEeeccCCc
Confidence            777888888888888876644433333333      23333332222  3444888999988 7776  45667777765


Q ss_pred             Ec
Q psy14540        280 AI  281 (291)
Q Consensus       280 ~l  281 (291)
                      +.
T Consensus       479 ~~  480 (1205)
T KOG0613|consen  479 PL  480 (1205)
T ss_pred             cc
Confidence            54

>TIGR00864 PCC polycystin cation channel protein

Probab=96.96  E-value=0.46  Score=47.48  Aligned_cols=192  Identities=14%  Similarity=0.192  Sum_probs=109.8

Q ss_pred             ceeeeecCCcEEEEEEecCCCCCeeEEEECCee-cC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe--CCC
Q psy14540         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT--NRV   85 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~--~~~   85 (291)
                      ....+..|+.|+|.-.........+.|..++.. .. .....                  .-+....|.|...+.  |..
T Consensus      1705 S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~------------------tHtf~~~G~y~VtVta~N~v 1766 (2740)
T TIGR00864      1705 SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM------------------SHSFPSAGLHLVTMKAFNEL 1766 (2740)
T ss_pred             cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce------------------EEEccCCceEEEEEEEEccc
Confidence            344567789999887666677788999875532 11 11100                  012445688877654  666


Q ss_pred             CceeeeeeEEEEcCCCCCcccceeccCC-cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceE
Q psy14540         86 GSQTHSADMRVYDAPGQPQDVKLVTSNS-RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS  164 (291)
Q Consensus        86 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      +....++.+.|+++..-.   .+....+ ....+..|..+.|.-.+..|. ...+.|..++..-...+..          
T Consensus      1767 ss~~~s~~V~VqepV~GL---~i~~~~~~~~~~~~ag~~v~F~a~vstGs-nVsw~W~f~~g~s~~gk~v---------- 1832 (2740)
T TIGR00864      1767 GSANASEEVDVQEPISGL---KIRAADAGEQNFFAADSSVCFQGELATGT-NVSWCWAIDGGSSKMGKHA---------- 1832 (2740)
T ss_pred             cccceeEEEEEEeccccc---eEecCCCCcccceecCcEEEEEEEccCCC-eeEEEEEeCCCCcccccee----------
Confidence            766667777777654211   1111111 111344577777777764444 3477887764321111000          


Q ss_pred             EEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEE--EeeeCCccCCceeEEEEecCCC
Q psy14540        165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC--VASNTVASDNHSSNLRVNVPPH  242 (291)
Q Consensus       165 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C--~~~~~~~~~~~~~~l~v~~~p~  242 (291)
                                                                  .....+.|.|+-  .|.|..+....+..+.|..++.
T Consensus      1833 --------------------------------------------~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~ 1868 (2740)
T TIGR00864      1833 --------------------------------------------CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIF 1868 (2740)
T ss_pred             --------------------------------------------EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecc
Confidence                                                        012234455533  4556666666777777776552


Q ss_pred             -CCCCCcc-cccCCceEEEEEEeecCCCCceEEEEECC
Q psy14540        243 -IGPFTFG-ELMEGVRTQVACVVQSGDLPLSLQWYKNG  278 (291)
Q Consensus       243 -~~~~~~~-~~~~g~~v~l~C~~~~~~p~~~v~W~~~~  278 (291)
                       +...... .+..|+.++|.+.+ ...+...+.|..++
T Consensus      1869 ~L~L~as~~~~~~n~~v~fsa~l-~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864      1869 GLELKASKKIAAIGEKVEFQILL-AAGSAVNFRLQIGG 1905 (2740)
T ss_pred             eEEEecccccccCCCEEEEEEEe-cCCCceEEEEEeCC
Confidence             2222222 27899999999998 65568899998874

Note: this model has been restricted to the amino half because for technical reasons.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.84  E-value=0.018  Score=37.10  Aligned_cols=86  Identities=14%  Similarity=0.191  Sum_probs=46.8

Q ss_pred             ceeecCCCceEEEEEeeCCCC--C-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--P-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ...+..|+.++|.|.+. +..  . ..+.|+|.... .. .-....... +.      .. ....+.++|.....     
T Consensus         7 ~~lv~p~~sv~LsC~~s-g~~~s~e~~~~wvRq~pg-~l-E~c~~~~~~-g~------~~-~~~~~r~tcs~~~s-----   70 (115)
T cd05721           7 PVLASSNGAASLVCEYT-YNGFSKEFRASLLKGADS-AV-EVCAVTGNM-SN------QL-QTSLDGFNCDGTLG-----   70 (115)
T ss_pred             CeEEcCCCCEEEEEEec-CCccccEEEEEEEEeCCC-Cc-EEEEEEeCC-Cc------cc-cccCCCeEEeEeCC-----
Confidence            46678899999999983 422  3 57899984322 10 000000000 00      00 01123445554332     


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                              ...-.|.+.+++.+|.+.|.|..+.
T Consensus        71 --------~ntv~L~l~~L~a~DTa~Y~Ca~e~   95 (115)
T cd05721          71 --------NEQVNFTLQNLRANQTDIYFCKIEL   95 (115)
T ss_pred             --------CCEEEEEEcCCCHHHCeEEEEEeee
Confidence                    2345688888888888888886654

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA02633 hypothetical protein; Provisional

Probab=96.68  E-value=0.0047  Score=34.40  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=23.3

Q ss_pred             eEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540        203 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV  239 (291)
Q Consensus       203 ~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~  239 (291)
                      ..|.|-++...|+|.|.|...|..-....++.|.|..
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~   54 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL   54 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence            3456666666777777777776665555556666553

>PHA03042 CD47-like protein; Provisional

Probab=96.64  E-value=0.014  Score=43.23  Aligned_cols=69  Identities=17%  Similarity=0.331  Sum_probs=43.9

Q ss_pred             ecCCcEEEEEEecCC-----CCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540         15 QPGPPVSLKCIATGN-----PTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ   88 (291)
Q Consensus        15 ~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   88 (291)
                      .-.+++.++|.+...     ....+.|..++..+- .+..           ..++|.+...+ .-.|+|+|++.+.....
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----------n~aSL~~~f~~-~l~GNYTCEv~~l~n~g   96 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----------NTSSLKFNFSK-NLSGNYTCEAINKFNKI   96 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------cceEEEEeccc-cCCCceeEEEeecccCc
Confidence            357899999998751     245599999998765 1111           11456665433 34799999998655544


Q ss_pred             eeeeeEE
Q psy14540         89 THSADMR   95 (291)
Q Consensus        89 ~~~~~l~   95 (291)
                      ...+.+.
T Consensus        97 k~~IeLk  103 (286)
T PHA03042         97 KNTIELQ  103 (286)
T ss_pred             cEEEEEE
Confidence            4444443

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.35  E-value=0.0012  Score=43.52  Aligned_cols=92  Identities=16%  Similarity=0.221  Sum_probs=44.4

Q ss_pred             ecCCCceEEEEEeeCC----CCCceeEEeECCEeccCCCc--eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        118 VHSGDRAGVQCLVTKG----DPPLTISWLKNGLPILSDAE--ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ..-++.+.|.|.+..-    .+...+.|.++|..+..-..  .......-.+..+                         
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i-------------------------   78 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI-------------------------   78 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-------------------------
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-------------------------
Confidence            3357889999998431    12346999998876532110  0000000000001                         


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV  239 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~  239 (291)
                          -++...+.+|.+...+.- .|+|+|++.......+..+.|....
T Consensus        79 ----~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~~~  121 (130)
T PF08204_consen   79 ----SELLKGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKYRV  121 (130)
T ss_dssp             ----GGGGGTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE--
T ss_pred             ----hHhhCCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEEEE
Confidence                112234556667665544 7888888877666666667776643

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG4597|consensus

Probab=96.22  E-value=0.008  Score=48.05  Aligned_cols=93  Identities=12%  Similarity=0.076  Sum_probs=66.4

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE---CCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL---DGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~---~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .+.-.|....+..|++..++|-+.|.+.+.|.|.+   |+..+- ......   ....-..+..|.|-+....|+|-|+|
T Consensus       198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~---e~p~vtstcql~ic~ewq~~a~w~tC  274 (560)
T KOG4597|consen  198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTV---ENPVVTSTCQLVICNEWQADAGWYTC  274 (560)
T ss_pred             ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcccc---CCcceeeeeeEEEcchhhcCCCceee
Confidence            44455667788999999999999999999999976   333221 111110   11112344679999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEcC
Q psy14540         80 TATNRVGSQTHSADMRVYDA   99 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~   99 (291)
                      .+.+..|...+.+.+.+...
T Consensus       275 s~rcg~g~~~rdv~c~s~~g  294 (560)
T KOG4597|consen  275 SARCGAGFLRRDVPCSSVKG  294 (560)
T ss_pred             ccccccceeeccceeeeecc
Confidence            99998888888777766543

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=95.99  E-value=0.097  Score=32.33  Aligned_cols=69  Identities=20%  Similarity=0.508  Sum_probs=45.1

Q ss_pred             ecceeeeecCCcEEEEEEecCC-----CCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGN-----PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      .|....+..|++++..|.+...     ....+.|..++..++...+..     . ....+.+++.+.....+-.|-|...
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~-----i-n~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRV-----I-NDTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEE-----E-STTEEEEEESS--SSEEEEEEEEEC
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcce-----e-CCeEEEEEEccCCCCCceEEEEEEc
Confidence            4566689999999999998742     345699999988887655543     1 2233667787776666666777643

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.95  E-value=0.098  Score=38.90  Aligned_cols=52  Identities=27%  Similarity=0.433  Sum_probs=38.6

Q ss_pred             CCceeEEeE-CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        135 PPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       135 p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..|.+.|.. +|..+.......+..    .+.|.+.+...+++|.|+|..+...-..
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~----TG~L~~~~F~esmSG~YTCtLsYk~i~~   63 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITE----TGKLMFKNFQESMSGSYTCTLSYKPIKA   63 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEcc----CceEEeeccccccCCceEEEEEEEeccc
Confidence            467899987 455555454555553    4569999999999999999999876433

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG1480|consensus

Probab=95.71  E-value=0.0053  Score=52.14  Aligned_cols=74  Identities=26%  Similarity=0.416  Sum_probs=54.2

Q ss_pred             eeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      ...|.-+.|.++..+.+.|.... .+...++|++++..+... ....        .....|++..+...|.|+|+|++.+
T Consensus       133 ~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~--------~~d~~li~~~arlsd~~nytc~a~n  204 (909)
T KOG1480|consen  133 EQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR--------ASDHNLIISQARLSDSGNYTCEATN  204 (909)
T ss_pred             ccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchh--------hhcCCccccchhhhhcccceeeeeh
Confidence            44556667889999999998764 777889999998776631 1111        1113378999999999999999987


Q ss_pred             CCCc
Q psy14540         84 RVGS   87 (291)
Q Consensus        84 ~~~~   87 (291)
                      -.+.
T Consensus       205 i~~~  208 (909)
T KOG1480|consen  205 IVAK  208 (909)
T ss_pred             hhcc
Confidence            6543

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.65  E-value=0.098  Score=33.01  Aligned_cols=35  Identities=29%  Similarity=0.393  Sum_probs=25.4

Q ss_pred             EEEEEeecCCCCCeEEEEEEeCCCCce-eeeeeEEE
Q psy14540         62 SHVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRV   96 (291)
Q Consensus        62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~l~v   96 (291)
                      .+|.|+.++..|+|.|.-++.+..|.. .+.+.+.|
T Consensus        71 laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   71 LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            458999999999999999999888875 33344443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=95.57  E-value=0.12  Score=40.31  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=17.6

Q ss_pred             cEEEEEEecC-CC-CCeeEEEEC
Q psy14540         19 PVSLKCIATG-NP-TPHISWKLD   39 (291)
Q Consensus        19 ~v~l~C~~~~-~~-~~~v~W~~~   39 (291)
                      .++|+|.+.+ .| ...+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            5799999998 44 567999999

>KOG0613|consensus

Probab=95.48  E-value=0.12  Score=47.15  Aligned_cols=153  Identities=14%  Similarity=0.112  Sum_probs=79.5

Q ss_pred             CceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEecc
Q psy14540        122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY  201 (291)
Q Consensus       122 ~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~  201 (291)
                      ..+.+.|..  |.|.+...|+.+|..+............. ...+.+...-..+.|.|.-.+.+..+....      ...
T Consensus       206 ~~v~~v~s~--gqp~~~~~~~~~g~~i~~~~~~~~s~t~e-~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~------~~~  276 (1205)
T KOG0613|consen  206 SRVRAVVSA--GQPEPLERWEILGELIAPGSAPSMSVTLE-ASDRKIQLTLRAPRGPYSAHILGYLIEQRK------HKG  276 (1205)
T ss_pred             eeEEEEEec--CCCccchhhhhcccccCCCCccccccccc-hhheeeeEEeecCCCchHHHHhcchhhhcc------cCC
Confidence            345566664  88999999999998887766554433222 223444444444555444333333332222      111


Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE----------------ecCCCCCCCCc----ccccCCceEEEEE
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV----------------NVPPHIGPFTF----GELMEGVRTQVAC  261 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v----------------~~~p~~~~~~~----~~~~~g~~v~l~C  261 (291)
                      ..+..+.+-.....+.|+|...+..+.....+...+                ..+|...+...    ..+..+..+++.|
T Consensus       277 ~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~  356 (1205)
T KOG0613|consen  277 GNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPT  356 (1205)
T ss_pred             CccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecc
Confidence            223333333344444455444444333222222221                11222222111    1267788899999


Q ss_pred             EeecCCCCc-eEEEEECCEEccCC
Q psy14540        262 VVQSGDLPL-SLQWYKNGLAISQP  284 (291)
Q Consensus       262 ~~~~~~p~~-~v~W~~~~~~l~~~  284 (291)
                      .. .+.+.+ .+.|++++.....+
T Consensus       357 ~~-~~~~~p~~~~~~~~~~~~~~~  379 (1205)
T KOG0613|consen  357 AL-SGTQKPDEAQGYHGEEVSSES  379 (1205)
T ss_pred             cc-cCCcCCchheeeccccccccc
Confidence            98 666665 59999997665443

>PHA03042 CD47-like protein; Provisional

Probab=95.27  E-value=0.14  Score=38.28  Aligned_cols=68  Identities=25%  Similarity=0.304  Sum_probs=40.6

Q ss_pred             CCCceEEEEEeeCC----CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        120 SGDRAGVQCLVTKG----DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       120 ~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      -.+.+.+.|.+..-    -....+.|..++..+...+..       ..++|.+... ..-.|.|+|+|.+..........
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-------n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~Ie  101 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-------NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIE  101 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-------cceEEEEecc-ccCCCceeEEEeecccCccEEEE
Confidence            46789999998421    124579999998876443222       1244544432 33477888888765554444333

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.03  E-value=0.048  Score=40.44  Aligned_cols=46  Identities=24%  Similarity=0.470  Sum_probs=32.0

Q ss_pred             CCeeEEEEC-CeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540         31 TPHISWKLD-GYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus        31 ~~~v~W~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      .|.+.|..+ |..+.. ....+      ..  ...|.+.+...+++|.|+|.++..
T Consensus        12 DP~y~W~GP~g~~l~gn~~~nI------T~--TG~L~~~~F~esmSG~YTCtLsYk   59 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNSYVNI------TE--TGKLMFKNFQESMSGSYTCTLSYK   59 (271)
T ss_pred             CCceEEECCCCcccCCCCeEEE------cc--CceEEeeccccccCCceEEEEEEE
Confidence            578999984 445552 22222      12  234999999999999999998753

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=94.75  E-value=0.56  Score=29.04  Aligned_cols=85  Identities=19%  Similarity=0.246  Sum_probs=49.7

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      .+.+.|....|..|+++.+.|+..-..+..+.|.-.   +.  +.     ....+..-..+.+.|++. | ..-.|.+.-
T Consensus         5 ~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~---L~--k~-----~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C   72 (91)
T PF03921_consen    5 EVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETS---LS--KT-----ELDSGPQWKAFQLSNVTE-D-SSPLCFFNC   72 (91)
T ss_dssp             -EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESS---SE--EE-----EEEEETTEEEEEEEEE-S-C-EEEEEEEEE
T ss_pred             EEEEECCccEECCCCCEEEEEcCCCCCCCcceEEEe---cC--Cc-----ccCCCCcEEEEEEEcccc-C-CeEEEEEEc
Confidence            345788889999999999999986322223444311   00  00     011122234466888886 4 466798875


Q ss_pred             CCCceeeeeeEEEEcCC
Q psy14540         84 RVGSQTHSADMRVYDAP  100 (291)
Q Consensus        84 ~~~~~~~~~~l~v~~~~  100 (291)
                      ......++..++|+..|
T Consensus        73 ~g~Q~~~~~~ItVY~~P   89 (91)
T PF03921_consen   73 SGEQSSASANITVYKPP   89 (91)
T ss_dssp             TTEEEEEEEEEEEEB--
T ss_pred             CCeEEEeEEeeEEeCCC
Confidence            44456777888888765

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.19  E-value=0.24  Score=38.74  Aligned_cols=22  Identities=14%  Similarity=0.468  Sum_probs=18.6

Q ss_pred             ceEEEEEeeCCCCC-ceeEEeEC
Q psy14540        123 RAGVQCLVTKGDPP-LTISWLKN  144 (291)
Q Consensus       123 ~~~l~C~~~~~~p~-~~~~W~~~  144 (291)
                      .++|+|.+.+.+|. ..++|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999777874 58999999

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=93.97  E-value=1.7  Score=31.61  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=28.5

Q ss_pred             CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEe-ecCCCCCeEEEEEEe
Q psy14540         31 TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNIS-SVRVEDSGIYQCTAT   82 (291)
Q Consensus        31 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~-~~~~~d~G~y~C~~~   82 (291)
                      ...+.|+.||..+..............+  ...++|.+. +......-..+|.+.
T Consensus         6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~   60 (211)
T PF02124_consen    6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVT   60 (211)
T ss_pred             cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEE
Confidence            3468999999988733332222222222  123556652 223333457899976

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=93.87  E-value=0.76  Score=28.42  Aligned_cols=64  Identities=20%  Similarity=0.326  Sum_probs=38.7

Q ss_pred             eeecCCCceEEEEEeeCCC----CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEE
Q psy14540        116 IKVHSGDRAGVQCLVTKGD----PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV  182 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  182 (291)
                      ..+..|.+++..|....+-    ....+.|..++..++......+.   +..+.+++.+........|-|.
T Consensus        13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in---~~~SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen   13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVIN---DTVSSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEES---TTEEEEEESS--SSEEEEEEEE
T ss_pred             CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeC---CeEEEEEEccCCCCCceEEEEE
Confidence            4677899999999985442    34579999998877655444333   2235566665554444455554

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>KOG4597|consensus

Probab=93.81  E-value=0.37  Score=39.12  Aligned_cols=86  Identities=16%  Similarity=0.111  Sum_probs=58.4

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeE---CCEeccCCCceEE-eccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLK---NGLPILSDAEITI-RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~---~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ...+..++...++|-+ .|.+.+.|+|.+   |+..+........ ...-+....|.|-+....|.|.|+|.+.+..|..
T Consensus       205 ~w~vg~wetcS~tCg~-~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~  283 (560)
T KOG4597|consen  205 EWFVGDWETCSSTCGV-QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL  283 (560)
T ss_pred             hhhcccchhhcccccc-cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence            3556788999999998 799999999975   4433322211111 1111234567888888888999999999988887


Q ss_pred             CCceEEEEecc
Q psy14540        191 NHSSNLRVNEY  201 (291)
Q Consensus       191 ~~~~~~~~~~~  201 (291)
                      ...+.+.+...
T Consensus       284 ~rdv~c~s~~g  294 (560)
T KOG4597|consen  284 RRDVPCSSVKG  294 (560)
T ss_pred             eccceeeeecc
Confidence            77777664443

>PHA03286 envelope glycoprotein E; Provisional

Probab=93.80  E-value=3.1  Score=33.91  Aligned_cols=83  Identities=16%  Similarity=0.121  Sum_probs=49.6

Q ss_pred             EEEEEeecCCCCCeEEEEEEeCCCCceeeee-eEEEEcC----CCCCc--------ccceeccCCcceeecCCCceEEEE
Q psy14540         62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSA-DMRVYDA----PGQPQ--------DVKLVTSNSRSIKVHSGDRAGVQC  128 (291)
Q Consensus        62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~-~l~v~~~----~~~~~--------~~~~~~~~~~~~~~~~g~~~~l~C  128 (291)
                      ..|+|.+++.+++|.|+-...+..+.....+ .+.|...    +..+.        ................|+++.+.-
T Consensus       127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv  206 (492)
T PHA03286        127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV  206 (492)
T ss_pred             CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence            6699999999999999999987766544443 4455322    11010        001112233445566899998776


Q ss_pred             EeeCC-CC---CceeEEeEC
Q psy14540        129 LVTKG-DP---PLTISWLKN  144 (291)
Q Consensus       129 ~~~~~-~p---~~~~~W~~~  144 (291)
                      ..... ..   ...+.|+.-
T Consensus       207 ~l~~~~~d~~Fsl~i~W~y~  226 (492)
T PHA03286        207 TAHLTNWAGAFSLEFRVLFL  226 (492)
T ss_pred             EEeecccCCCceEEEEEEEe
Confidence            55311 11   347899873

>PHA03052 Hypothetical protein; Provisional

Probab=93.74  E-value=0.22  Score=28.36  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=27.3

Q ss_pred             ccCCceEEEEEEeecCCCC--ceEEEEECCEEccC
Q psy14540        251 LMEGVRTQVACVVQSGDLP--LSLQWYKNGLAISQ  283 (291)
Q Consensus       251 ~~~g~~v~l~C~~~~~~p~--~~v~W~~~~~~l~~  283 (291)
                      +..|..++|.|.+.-|.+.  +-|.|.-|+..++.
T Consensus         9 ~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~   43 (69)
T PHA03052          9 TSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE   43 (69)
T ss_pred             EEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence            7899999999999656554  57899999999843

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=93.33  E-value=1.2  Score=27.66  Aligned_cols=20  Identities=25%  Similarity=0.712  Sum_probs=16.8

Q ss_pred             eEEEEEeeCCCCCceeEEeE
Q psy14540        124 AGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       124 ~~l~C~~~~~~p~~~~~W~~  143 (291)
                      +.-.|.+..|.|+..|+|.-
T Consensus        23 ~VA~CiSa~GrPpa~ItW~t   42 (98)
T cd05890          23 LVATCVSANGKPPSVVRWDT   42 (98)
T ss_pred             EEEEEEcCCCcCCcEeEEEc
Confidence            44589987999999999974

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>TIGR00864 PCC polycystin cation channel protein

Probab=93.32  E-value=11  Score=38.75  Aligned_cols=70  Identities=14%  Similarity=0.202  Sum_probs=47.7

Q ss_pred             cCCCCCeEEEEEE--eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540         69 VRVEDSGIYQCTA--TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus        69 ~~~~d~G~y~C~~--~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~  145 (291)
                      .+..+.|.|+-.+  .|..+....+..+.|+++...     .. .......+..|+.++|.+.+. ..+...+.|...+
T Consensus      1834 ~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~-----L~-L~as~~~~~~n~~v~fsa~l~-~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864      1834 MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFG-----LE-LKASKKIAAIGEKVEFQILLA-AGSAVNFRLQIGG 1905 (2740)
T ss_pred             EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecce-----EE-EecccccccCCCEEEEEEEec-CCCceEEEEEeCC
Confidence            4677889998875  477777777777788765411     11 112334667899999999884 4457889997753

Note: this model has been restricted to the amino half because for technical reasons.

>PHA03189 UL14 tegument protein; Provisional

Probab=93.13  E-value=1.5  Score=33.62  Aligned_cols=22  Identities=14%  Similarity=0.166  Sum_probs=17.9

Q ss_pred             ecceeeeecCCcEEEEEEecCC
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGN   29 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~   29 (291)
                      .|.++-+..|+.+++.|.+...
T Consensus        58 spAP~l~pyGdrvtVpC~fp~H   79 (348)
T PHA03189         58 SPAPLLVPYGDRVTVPCTFPTH   79 (348)
T ss_pred             CCCccccCCCceeeeeeeecCC
Confidence            3566778899999999998753

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=92.22  E-value=1.7  Score=26.89  Aligned_cols=71  Identities=17%  Similarity=0.142  Sum_probs=38.2

Q ss_pred             CCcceeecceeeeecC----CcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPG----PPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g----~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.|+..+....+...    +...|.+.+.+. ...+.|+.||..+.......            .+.   ......|.|
T Consensus        10 ~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~------------~~~---~~~~~~G~h   73 (89)
T PF06832_consen   10 PLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH------------QLF---WQPDRPGEH   73 (89)
T ss_pred             CCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCCC------------eEE---eCCCCCeeE
Confidence            4555554433333222    245555566554 44899999999884211110            011   233456888


Q ss_pred             EEEEeCCCCce
Q psy14540         78 QCTATNRVGSQ   88 (291)
Q Consensus        78 ~C~~~~~~~~~   88 (291)
                      +-.+....|..
T Consensus        74 ~l~vvD~~G~~   84 (89)
T PF06832_consen   74 TLTVVDAQGRS   84 (89)
T ss_pred             EEEEEcCCCCE
Confidence            88776666543

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=92.02  E-value=0.072  Score=33.61  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=11.4

Q ss_pred             EEEEeeCCCCCceeEEEEEEecCC
Q psy14540        165 SLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       165 ~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      .|.|+.++.+|+|.|..++++..|
T Consensus        72 aLlIkaAq~qDSG~Y~LEvT~~sG   95 (108)
T PF11465_consen   72 ALLIKAAQPQDSGLYCLEVTNESG   95 (108)
T ss_dssp             EEEESS-SGGG-EEEEEEEEETTS
T ss_pred             eEEEeecCcccCceEEEEEEcCCC
Confidence            455555555555555555555444

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA03052 Hypothetical protein; Provisional

Probab=91.94  E-value=0.65  Score=26.52  Aligned_cols=35  Identities=23%  Similarity=0.496  Sum_probs=27.8

Q ss_pred             cceeecCCCceEEEEEeeCCCC--CceeEEeECCEec
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPI  148 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~  148 (291)
                      ..+.+..|..++|.|++.-+.+  .+.+.|..|+..+
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            4567888999999999976655  3578898888777

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=90.13  E-value=3.1  Score=25.88  Aligned_cols=66  Identities=20%  Similarity=0.359  Sum_probs=36.8

Q ss_pred             EEEEec-CCCCCeeEEEE--CCeecCCCeeEeceEEeec--cceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeee
Q psy14540         22 LKCIAT-GNPTPHISWKL--DGYPLAGDRFVMGQYMSLH--GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD   93 (291)
Q Consensus        22 l~C~~~-~~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   93 (291)
                      -.|.+. |.|+..|+|.-  +|..      .........  -...+.+.+......|.-..+|.+.+.......++.
T Consensus        25 A~CiSa~GrPpa~ItW~t~l~G~~------etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~   95 (98)
T cd05890          25 ATCVSANGKPPSVVRWDTRLKGEA------EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVT   95 (98)
T ss_pred             EEEEcCCCcCCcEeEEEccCCCce------eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEE
Confidence            489855 58999999984  2221      111111111  122355556666677777999999865433333333

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.00  E-value=2.9  Score=25.27  Aligned_cols=19  Identities=42%  Similarity=0.656  Sum_probs=15.4

Q ss_pred             EEEeecCCCCCeEEEEEEe
Q psy14540         64 VNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~~   82 (291)
                      +.....+..|+|.+.|.+.
T Consensus        45 ~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   45 VSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             EEEESBTCGGSEEEEEEEE
T ss_pred             EEEecCCCCCCEEEEEEEc
Confidence            3456678899999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03112 IL-18 binding protein; Provisional

Probab=89.71  E-value=1.2  Score=29.97  Aligned_cols=73  Identities=12%  Similarity=0.160  Sum_probs=40.6

Q ss_pred             eecCCcEEEEEEecC-CCC-CeeEEEECC-eecC----C----CeeEec-eEEeeccceEEEEEEeecCCC-CCeEEEEE
Q psy14540         14 LQPGPPVSLKCIATG-NPT-PHISWKLDG-YPLA----G----DRFVMG-QYMSLHGDVISHVNISSVRVE-DSGIYQCT   80 (291)
Q Consensus        14 v~~g~~v~l~C~~~~-~~~-~~v~W~~~~-~~~~----~----~~~~~~-~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~   80 (291)
                      -.+++.+.|.|.+-+ .|. ..+.|..++ +...    .    ++.... ............|.+.+++.. +.-.++|.
T Consensus        35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV  114 (141)
T PHA03112         35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV  114 (141)
T ss_pred             cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence            367999999999886 354 348999754 2211    0    111111 111111234466777887755 33488888


Q ss_pred             EeCCCC
Q psy14540         81 ATNRVG   86 (291)
Q Consensus        81 ~~~~~~   86 (291)
                      .-...+
T Consensus       115 L~D~~~  120 (141)
T PHA03112        115 LMDLDG  120 (141)
T ss_pred             EecCCc
Confidence            764443

>PHA03240 envelope glycoprotein M; Provisional

Probab=86.47  E-value=1.5  Score=31.56  Aligned_cols=28  Identities=18%  Similarity=0.209  Sum_probs=20.2

Q ss_pred             eeeeecCCcEEEEEEecCCCCCeeEEEE
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPHISWKL   38 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~   38 (291)
                      ++++.+|++|+|.-.-...+.-.+.|++
T Consensus        32 evt~r~G~nVTLga~~~lhpgq~v~Wy~   59 (258)
T PHA03240         32 EHTTREGDPLLLGGGHGLGAGQKAHWYK   59 (258)
T ss_pred             ecccccCCceeeCCcccCCCCCEEEEEe
Confidence            4578899999996432224566799998

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=83.52  E-value=2.4  Score=25.59  Aligned_cols=17  Identities=41%  Similarity=0.597  Sum_probs=9.1

Q ss_pred             EEeeeecCCCeeEEEEe
Q psy14540        206 SIATLSTGHSGNYTCVA  222 (291)
Q Consensus       206 ~i~~~~~~~~g~y~C~~  222 (291)
                      .......+|+|.+.|.|
T Consensus        46 ~~~~~~~~d~G~w~C~a   62 (80)
T PF05790_consen   46 STFTPTTEDSGTWVCTA   62 (80)
T ss_dssp             EEESBTCGGSEEEEEEE
T ss_pred             EEecCCCCCCEEEEEEE
Confidence            33344445566666666

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03283 envelope glycoprotein E; Provisional

Probab=83.03  E-value=27  Score=29.47  Aligned_cols=83  Identities=19%  Similarity=0.221  Sum_probs=50.0

Q ss_pred             EEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcc---c-----------ceeccCCcceeecCCCceEEE
Q psy14540         62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQD---V-----------KLVTSNSRSIKVHSGDRAGVQ  127 (291)
Q Consensus        62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~---~-----------~~~~~~~~~~~~~~g~~~~l~  127 (291)
                      ..|.|.+++.+++|.|+-...+..+.....+.++|..++..+..   .           ..............|+++.+.
T Consensus       134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls  213 (542)
T PHA03283        134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS  213 (542)
T ss_pred             CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence            66899999999999999998876653444445566552221110   0           011122233455689998886


Q ss_pred             EEeeCCC--C--CceeEEeEC
Q psy14540        128 CLVTKGD--P--PLTISWLKN  144 (291)
Q Consensus       128 C~~~~~~--p--~~~~~W~~~  144 (291)
                      -......  +  ...+.|+.-
T Consensus       214 i~l~s~~~d~~fs~~i~Wyy~  234 (542)
T PHA03283        214 VHLESDIGDPSFSATIDWYYM  234 (542)
T ss_pred             EEEeeccCCCCceEEEEEEEe
Confidence            6553221  2  347899873

>KOG1026|consensus

Probab=81.48  E-value=5.3  Score=35.43  Aligned_cols=153  Identities=19%  Similarity=0.263  Sum_probs=81.7

Q ss_pred             eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS   91 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   91 (291)
                      ..+..|..+++.|...+.+.+.+.|+.++............-.        .......      .+.|...+..+.....
T Consensus       202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--------~~~~~~~------~~~c~~E~~~~~~~~~  267 (774)
T KOG1026|consen  202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--------SECEVLE------NDLCIAENAVARSNPS  267 (774)
T ss_pred             hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--------ccceeee------chhhHHHHhhhhcCce
Confidence            4578899999999999999999999987655442111110000        0111111      1889888777776666


Q ss_pred             eeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee--CCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEe
Q psy14540         92 ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIA  169 (291)
Q Consensus        92 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~  169 (291)
                      +.+.+..+...-     ....+.      +.  .-.|...  .+.|.+...|..++..+...........+. ...+...
T Consensus       268 v~~~~~~p~~~~-----~~~~~~------~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~-~~C~~~~  333 (774)
T KOG1026|consen  268 ILLVVDLPKAEV-----LLCSPL------SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGK-EQCLPWN  333 (774)
T ss_pred             eeeEEecccccc-----cCCCCc------cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccC-cCCcccC
Confidence            666655432110     000000      00  1223221  256677888888776543322222111111 0222333


Q ss_pred             eCCCCCceeEEEEEEecCCCCCC
Q psy14540        170 TLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       170 ~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ..+-.+.|.|+|.+.+..|....
T Consensus       334 ~~~h~~~~~~~~~~e~~~g~~~~  356 (774)
T KOG1026|consen  334 DPPHSHNGNYTLFPELPGGKNYC  356 (774)
T ss_pred             cCcccccCcceeeecccCccccc
Confidence            33456788899999888765543

>PHA03240 envelope glycoprotein M; Provisional

Probab=81.39  E-value=9.9  Score=27.62  Aligned_cols=28  Identities=14%  Similarity=0.054  Sum_probs=20.4

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      .+.+.+|++|+|.-.- ...|...+.|++
T Consensus        32 evt~r~G~nVTLga~~-~lhpgq~v~Wy~   59 (258)
T PHA03240         32 EHTTREGDPLLLGGGH-GLGAGQKAHWYK   59 (258)
T ss_pred             ecccccCCceeeCCcc-cCCCCCEEEEEe
Confidence            3567789999887543 234677899998

>PHA03282 envelope glycoprotein E; Provisional

Probab=81.32  E-value=30  Score=28.78  Aligned_cols=24  Identities=29%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeC
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNT  225 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~  225 (291)
                      .-.|.|.+...+++|.|.|.+.-.
T Consensus       332 ~VdL~F~nAp~saSGLYVfVl~yN  355 (540)
T PHA03282        332 TVNLQLRDASEASGGLYVCVVYVN  355 (540)
T ss_pred             ccceEecCCCcccCceEEEEEEEC
Confidence            458999999999999999988643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	291
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-31
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		4e-15
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		7e-15
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		9e-15
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		3e-13
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		3e-13
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		3e-13
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		3e-13
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		6e-13
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		1e-12
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		1e-12
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		2e-12
3kld_A	384	Ptprg Cntn4 Complex Length = 384		2e-12
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-12
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		1e-11
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-11
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-11
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-11
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-11
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		1e-10
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		1e-06
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-10
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		4e-10
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		1e-09
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		7e-09
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		2e-08
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		2e-08
1nbq_A	209	Crystal Structure Of Human Junctional Adhesion Mole		6e-08
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		8e-08
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		2e-04
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		1e-07
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		5e-04
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		1e-07
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		4e-04
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		2e-07
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		5e-04
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		2e-07
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		3e-04
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		2e-07
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-07
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-04
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		2e-07
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		5e-04
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		2e-07
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		3e-07
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		4e-06
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-07
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-06
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		2e-06
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		4e-07
1djs_A	216	Ligand-binding Portion Of Fibroblast Growth Factor		4e-07
3v6b_R	424	Vegfr-2VEGF-E Complex Structure Length = 424		5e-07
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		6e-07
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		7e-07
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		4e-04
3s97_C	201	Ptprz Cntn1 Complex Length = 201		9e-07
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		1e-06
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		1e-06
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		1e-06
3o3u_N	581	Crystal Structure Of Human Receptor For Advanced Gl		2e-06
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		2e-06
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		4e-04
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		2e-06
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		3e-04
3s58_A	223	Rage Recognizes Nucleic Acids And Promotes Inflamma		2e-06
3cjj_A	219	Crystal Structure Of Human Rage Ligand-Binding Doma		2e-06
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		2e-06
1nun_B	230	Crystal Structure Analysis Of The Fgf10-fgfr2b Comp		3e-06
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		4e-06
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		4e-05
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		7e-06
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		1e-05
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-04
2l7u_A	105	Structure Of Cel-Pep-Rage V Domain Complex Length =		3e-05
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		4e-05
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		5e-05
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		6e-05
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		6e-05
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		6e-05
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		8e-05
3jz7_A	214	Crystal Structure Of The Extracellular Domains Of C		1e-04
3mj7_B	225	Crystal Structure Of The Complex Of Jaml And Coxsac		1e-04
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		1e-04
2fgw_H	232	X-Ray Structures Of Fragments From Binding And Nonb		1e-04
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		1e-04
1f97_A	212	Soluble Part Of The Junction Adhesion Molecule From		1e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		2e-04
2xy2_A	189	Crystal Structure Of Ncam2 Ig1-2 Length = 189		2e-04
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		3e-04
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		3e-04
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		4e-04
3caf_A	100	Crystal Structure Of Hfgfr2 D2 Domain Length = 100		5e-04
2ec8_A	524	Crystal Structure Of The Exctracellular Domain Of T		7e-04
3dar_A	105	Crystal Structure Of D2 Domain From Human Fgfr2 Len		7e-04
2e9w_A	489	Crystal Structure Of The Extracellular Domain Of Ki		7e-04
1wvz_A	104	Solution Structure Of The D2 Domain Of The Fibrobla		7e-04
3ivk_H	224	Crystal Structure Of The Catalytic Core Of An Rna P		8e-04
1wwc_A	118	Nt3 Binding Domain Of Human Trkc Receptor Length =		9e-04

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 141/293 (48%), Gaps = 60/293 (20%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVI 61
           P +   F ++T++PGP V LKC+A GNPTP ISW+LDG  +A  DR+ +GQY++++GDV+
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV 489
Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           S++NI+SV   D G+Y+C A ++VG   HSA + VY  P   Q  K          + +G
Sbjct: 490 SYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKA--------IVAG 541
Query: 122 DRAGVQCLVTKGDPPLTISWLKN--GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
           +   V C V  G P  +I W ++   LPI    ++                       N 
Sbjct: 542 ETLIVTCPVA-GYPIDSIVWERDNRALPINRKQKVF---------------------PNG 579
Query: 180 TCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA-SDNHSSNLRVN 238
           T +  N   + + ++                       YTCVA N    S   S  ++V 
Sbjct: 580 TLIIENVERNSDQAT-----------------------YTCVAKNQEGYSARGSLEVQVM 616
Query: 239 VPPHIGPFTF--GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
           V P I PF F  G    G    + C V  GDLPL++ W  +G AIS+ D+ IT
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISE-DLGIT 668

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           S P  +     QT   G   S  C ATG P P I+W   G  ++  RF + ++    G V
Sbjct: 6   SKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV 65
Query: 61  ISHVNISSVRVE-DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
           +    I  +RV+ D  IY+CTATN +G    SA + V +    P     +    +   V 
Sbjct: 66  L---RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVE 122
Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPI---LSDAEITIRSSGEYTSSLSIATLSTGHS 176
            G  A + C    G+P   ISW K+ LP+    S+  I    SG    +L I +      
Sbjct: 123 KGRTATMLC-AAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSG----ALQIESSEESDQ 177
Query: 177 GNYTCVASNTVAS 189
           G Y CVA+N+  +
Sbjct: 178 GKYECVATNSAGT 190

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 84/193 (43%), Gaps = 12/193 (6%)
Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           S P  I     QT   G   S  C ATG P P I+W   G  ++  RF + ++    G V
Sbjct: 5   SKPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSV 64
Query: 61  ISHVNISSVRVE-DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
           +    I  +RV+ D  IY+CTATN +G    SA + V +    P     +    + +KV 
Sbjct: 65  L---RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQ-LKVV 120
Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPI---LSDAEITIRSSGEYTSSLSIATLSTGHS 176
              R         G+P   ISW K+ LP+    S+  I    SG    +L I +      
Sbjct: 121 EKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSG----ALQIESSEESDQ 176
Query: 177 GNYTCVASNTVAS 189
           G Y CVA+N+  +
Sbjct: 177 GKYECVATNSAGT 189

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 126/334 (37%), Gaps = 86/334 (25%)
Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
           G P++L+C   G P   I+W  +   L   R      M    +V S V I+ V   D G 
Sbjct: 20  GEPITLQCKVDGTPEIRIAWYKEHTKL---RSAPAYKMQFKNNVASLV-INKVDHSDVGE 75
Query: 77  YQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK-VHS--GDRAGVQCLVTKG 133
           Y C A N VG+   SA + +       ++ KL  S +R +K VH   G     +C +  G
Sbjct: 76  YTCKAENSVGAVASSAVLVI-------KERKLPPSFARKLKDVHETLGFPVAFECRIN-G 127
Query: 134 DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN-------- 185
             PL +SW K+G  +  DA +   S     ++L I      H G Y C ASN        
Sbjct: 128 SEPLQVSWYKDGELLKDDANLQT-SFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSS 186
Query: 186 -------------------------------------------TVASDNHS------SNL 196
                                                      T A DN          +
Sbjct: 187 AKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKM 246
Query: 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVR 256
            + E T++L++  ++ G +G YTC ASN    D+ S+ L V  PP      F + +E  R
Sbjct: 247 TLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPR-----FIKKLEPSR 301
Query: 257 -------TQVACVVQSGDLPLSLQWYKNGLAISQ 283
                  T+  C +  G   + + WYK+   I +
Sbjct: 302 IVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQE 334

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 94/230 (40%), Gaps = 17/230 (7%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P+ I +   Q    G   S  C ATG+P P ++W   G  +   RF   ++    G V+ 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
              + + R  D  +Y+C A N VG  T  A + V      P     +    + +KV    
Sbjct: 67  IQPLRTPR--DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ-LKVVERT 123
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPI---LSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
           R         G+P   I+W K+ LP+    S+  I    SG    +L I +      G Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG----ALQIESSEETDQGKY 179
Query: 180 TCVASNTVASDNHS-SNL--RVNEYTSSLSIATLS----TGHSGNYTCVA 222
            CVA+N+      S +NL  RV       SI  +S     G + N TCVA
Sbjct: 180 ECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVA 229

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 79/184 (42%), Gaps = 25/184 (13%)
Query: 17  GPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG 75
           G  V+L+C A GNP P I W K+DG        +  Q+ +        + I SV  ED G
Sbjct: 221 GQQVTLECFAFGNPVPRIKWRKVDGS-------LSPQWTTAE----PTLQIPSVSFEDEG 269
Query: 76  IYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP 135
            Y+C A N  G  T    + V     QP+ +K+++     I   S  R G       G P
Sbjct: 270 TYECEAENSKGRDTVQGRIIVQ---AQPEWLKVISDTEADIG--SNLRWGC---AAAGKP 321
Query: 136 PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195
             T+ WL+NG P+ S   + +         L  + LS   SG Y CVA N   +   S+ 
Sbjct: 322 RPTVRWLRNGEPLASQNRVEV-----LAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAE 376
Query: 196 LRVN 199
           L V 
Sbjct: 377 LAVQ 380

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P++I       ++   P +L C   G P P I W  DG P++ +     +     G +  
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQT--HSA--------DMRVYDAPGQPQDVKLVTSN 112
           +  +   + +D G Y C A NRVG     H++        D RV     +P+D       
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV-----EPKDT------ 118
Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYT----SSLSI 168
               +V  G+ A ++C   KG P  T+ W+K+G+P+     ++  +S         +L I
Sbjct: 119 ----RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI 174
Query: 169 ATLSTGHSGNYTCVASNTVASDNHS 193
           + +     GNY C+A N V +   S
Sbjct: 175 SNVEPIDEGNYKCIAQNLVGTRESS 199

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P++I       ++   P +L C   G P P I W  DG P++ +     +     G +  
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQT--HSA--------DMRVYDAPGQPQDVKLVTSN 112
           +  +   + +D G Y C A NRVG     H++        D RV     +P+D       
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV-----EPKDT------ 118
Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYT----SSLSI 168
               +V  G+ A ++C   KG P  T+ W+K+G+P+     ++  +S         +L I
Sbjct: 119 ----RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLI 174
Query: 169 ATLSTGHSGNYTCVASNTVASDNHS 193
           + +     GNY C+A N V +   S
Sbjct: 175 SNVEPIDEGNYKCIAQNLVGTRESS 199

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 85/199 (42%), Gaps = 26/199 (13%)
Query: 3   PQLIYKFIQQTLQ-PGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDV 60
           P +  KF   T    G  V+L+C A GNP P I W KLDG   +           L  + 
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS---------KWLSSEP 257
Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
           + H  I +V  ED G Y+C A N  G  T+   + ++    QP  + ++T     I    
Sbjct: 258 LLH--IQNVDFEDEGTYECEAENIKGRDTYQGRIIIH---AQPDWLDVITDTEADI---- 308
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
           G      C V  G P   + WL++G P+ S   I + S GE    L  + L    SG Y 
Sbjct: 309 GSDLRWSC-VASGKPRPAVRWLRDGQPLASQNRIEV-SGGE----LRFSKLVLEDSGMYQ 362
Query: 181 CVASNTVASDNHSSNLRVN 199
           CVA N   +   S+ L V 
Sbjct: 363 CVAENKHGTVYASAELTVQ 381

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 89/194 (45%), Gaps = 25/194 (12%)
Query: 20  VSLKCIATGNPTPHISWK--LDGYPL-AGDRFVMG--QYMSLHGDVISHVNISSVRVEDS 74
           V+L C A G P P I+WK  +DG+    GD+ + G  +    HG   S ++I  V++ DS
Sbjct: 18  VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS--SSLHIKDVKLSDS 75
Query: 75  GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD 134
           G Y C A +R+G    S  + +  AP      K + SN        G+   + C V K +
Sbjct: 76  GRYDCEAASRIGGHQKSMYLDIEYAP------KFI-SNQTIYYSWEGNPINISCDV-KSN 127
Query: 135 PPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           PP +I W ++   LP  +   +   S+G     L IA  S    G Y C A+N + +   
Sbjct: 128 PPASIHWRRDKLVLPAKNTTNLKTYSTGR-KMILEIAPTSDNDFGRYNCTATNHIGT--- 183
Query: 193 SSNLRVNEYTSSLS 206
               R  EY  +L+
Sbjct: 184 ----RFQEYILALA 193

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 25/208 (12%)
Query: 6   IYKFIQQTLQPGPPVSLKCIATGNPTPHISWK--LDGYPL-AGDRFVMG--QYMSLHGDV 60
           I +   +T      V+L C A G P P I+WK  +DG+    GD+ + G  +    HG  
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS- 62
Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
            S ++I  V++ DSG Y C A +R+G    S  + +  AP      K + SN        
Sbjct: 63  -SSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAP------KFI-SNQTIYYSWE 114
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
           G+   + C V K +PP +I W ++   LP  +   +   S+G     L IA  S    G 
Sbjct: 115 GNPINISCDV-KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR-KMILEIAPTSDNDFGR 172
Query: 179 YTCVASNTVASDNHSSNLRVNEYTSSLS 206
           Y C A+N + +       R  EY  +L+
Sbjct: 173 YNCTATNHIGT-------RFQEYILALA 193

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 15  QPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVED 73
           + G  V L+C A GNP P I W + DG P+A          +        + I + + ED
Sbjct: 217 EKGTTVKLECFALGNPVPTILWRRADGKPIA--------RKARRHKSNGILEIPNFQQED 268
Query: 74  SGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG 133
           +G Y+C A N  G       +  Y    QP  V+++      I V   +    +C    G
Sbjct: 269 AGSYECVAENSRGKNVAKGQLTFY---AQPNWVQIIN----DIHVAMEESVFWECKAN-G 320
Query: 134 DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
            P  T  WLKNG P+L+   I I        +L+I  ++   +G Y CVA N
Sbjct: 321 RPKPTYRWLKNGDPLLTRDRIQIEQ-----GTLNITIVNLSDAGMYQCVAEN 367

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 15  QPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVED 73
           + G  V L+C A GNP P I W + DG P+A          +        + I + + ED
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIA--------RKARRHKSNGILEIPNFQQED 269
Query: 74  SGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG 133
           +G Y+C A N  G       +  Y    QP  V+++      I V   +    +C    G
Sbjct: 270 AGSYECVAENSRGKNVAKGQLTFY---AQPNWVQIIN----DIHVAMEESVFWECKAN-G 321
Query: 134 DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
            P  T  WLKNG P+L+   I I        +L+I  ++   +G Y CVA N
Sbjct: 322 RPKPTYRWLKNGDPLLTRDRIQIEQ-----GTLNITIVNLSDAGMYQCVAEN 368

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 5/189 (2%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P+     + QT   G   S  C ATG+P P I W   G  ++  RF + ++    G V+ 
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
              + + R  D  IY+C A+N VG  + S  + V      P+    +    + +KV    
Sbjct: 67  IQPLRTPR--DEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQ-LKVVERT 123
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPI-LSDAEITIRS-SGEYTSSLSIATLSTGHSGNYT 180
           R         G+P   I+W K+ LP+  S+    I+    E   +L I        G Y 
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYE 183
Query: 181 CVASNTVAS 189
           CVA+N+  +
Sbjct: 184 CVATNSAGT 192

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 83/203 (40%), Gaps = 25/203 (12%)
Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRF-VMGQYMSLHGDVISHVNISSVRVE--D 73
           G P +L C A G PTP I W   G  +  D+       M L    +  + I   R    D
Sbjct: 24  GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD 83
Query: 74  SGIYQCTATNRVGSQ-THSADMRVY----DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQC 128
            G+Y C A N +G   +H A + V     D    P DV +            G+ A ++C
Sbjct: 84  EGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAV----------GEPAVMEC 133
Query: 129 LVTKGDPPLTISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
              +G P  TISW K+G P+   D  ITIR        L I       +G Y CV +N V
Sbjct: 134 QPPRGHPEPTISWKKDGSPLDDKDERITIRG-----GKLMITYTRKSDAGKYVCVGTNMV 188
Query: 188 AS-DNHSSNLRVNEYTSSLSIAT 209
              ++  + L V E  S +  A 
Sbjct: 189 GERESEVAELTVLERPSFVKAAA 211

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 78/192 (40%), Gaps = 12/192 (6%)
Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           S P  I K + Q    G   S  C ATG+P P ++W   G  +   RF   ++    G V
Sbjct: 5   SPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAV 64
Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
           +    + + R  D  IY+C A N  G  T  A + V      P     +    + +KV  
Sbjct: 65  LRIQPLRTPR--DENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQ-LKVVE 121
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPI---LSDAEIT-IRSSGEYTSSLSIATLSTGHS 176
             R         G+P   I+W K+ LP+    S+  I  +RS G     L I +      
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGG-----LQIESSEETDQ 176
Query: 177 GNYTCVASNTVA 188
           G Y CVASN+  
Sbjct: 177 GKYECVASNSAG 188

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 10/187 (5%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P+ I +   Q    G   S  C ATG+P P ++W   G  +   RF   ++    G V+ 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
              + + R  D  +Y+C A N VG  T  A + V      P     +    + +KV    
Sbjct: 67  IQPLRTPR--DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ-LKVVERT 123
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPI---LSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
           R         G+P   I+W K+ LP+    S+  I    SG    +L I +      G Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG----ALQIESSEETDQGKY 179
Query: 180 TCVASNT 186
            CVA+N+
Sbjct: 180 ECVATNS 186

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 10/187 (5%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P+ I +   Q    G   S  C ATG+P P ++W   G  +   RF   ++    G V+ 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
              + + R  D  +Y+C A N VG  T  A + V      P     +    + +KV    
Sbjct: 67  IQPLRTPR--DENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ-LKVVERT 123
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPI---LSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
           R         G+P   I+W K+ LP+    S+  I    SG    +L I +      G Y
Sbjct: 124 RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSG----ALQIESSEETDQGKY 179
Query: 180 TCVASNT 186
            CVA+N+
Sbjct: 180 ECVATNS 186

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 30/204 (14%)
Query: 8   KFIQQTLQ----PGPPVSLKCIATGNPTPHISWKL---DGYPLAGD-RFVMGQYMSLHGD 59
           +F+ QT       G  V LKC   G+P P I W+    D  P+ GD R V+    +L   
Sbjct: 123 RFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ-- 180
Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQT-HSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
                 IS ++  DSG+Y+C+A N   ++T + A++R+   PG  + +  +   S  I +
Sbjct: 181 ------ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAI 234
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYT----SSLSIATLSTG 174
              D A ++C V+ G PP + +WL+         E+    S +Y+    S+L I+ ++  
Sbjct: 235 EGKD-AVLECCVS-GYPPPSFTWLRG-------EEVIQLRSKKYSLLGGSNLLISNVTDD 285
Query: 175 HSGNYTCVASNTVASDNHSSNLRV 198
            SG YTCV +    + + S+ L V
Sbjct: 286 DSGTYTCVVTYKNENISASAELTV 309

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 15/129 (11%)
Query: 22  LKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81
           L+CIA+G PTP I+W   G  L  D+     +          + I++V  EDSG Y C A
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA-------LRITNVSEEDSGEYFCLA 294
Query: 82  TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISW 141
           +N++GS  H+  +RV  AP             +++ +  G+   + C    G+P  T+ W
Sbjct: 295 SNKMGSIRHTISVRVKAAP-------YWLDEPKNLILAPGEDGRLVCRAN-GNPKPTVQW 346
Query: 142 LKNGLPILS 150
           + NG P+ S
Sbjct: 347 MVNGEPLQS 355

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 71/329 (21%), Positives = 111/329 (33%), Gaps = 83/329 (25%)
Query: 20  VSLKCIATGNPTPHISWKLDG--YPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77
           + ++C A GNP P   W  +   + +A D  V  +  S  G ++          E  G Y
Sbjct: 35  ILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS--GTLVIDFRSGGRPEEYEGEY 92
Query: 78  QCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP 136
           QC A N+ G+  ++   ++V  +P  P++      N   + V  G    +QC    G P 
Sbjct: 93  QCFARNKFGTALSNRIRLQVSKSPLWPKE------NLDPVVVQEGAPLTLQCNPPPGLPS 146
Query: 137 LTISWLKNGL-PILSDAEI----------------------------------------- 154
             I W+ + + PI  D  +                                         
Sbjct: 147 PVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFT 206
Query: 155 ----TIRSSGEYTSSL-------SIATLSTGHSGNYTCVASNT---------VASDNHSS 194
               T R   E T S        S   +  G      C+AS              D  S 
Sbjct: 207 LKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSD 266
Query: 195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE---- 250
             +   +  +L I  +S   SG Y C+ASN + S  H+ ++RV       P+   E    
Sbjct: 267 KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA----APYWLDEPKNL 322
Query: 251 -LMEGVRTQVACVVQSGDLPLSLQWYKNG 278
            L  G   ++ C       P ++QW  NG
Sbjct: 323 ILAPGEDGRLVCRANGNPKP-TVQWMVNG 350

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 14/202 (6%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHG-DVI 61
           P++I K   Q ++ G   S  C A G+P P I W+ +G  ++G      +Y  L     I
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG---TQSRYTVLEQPGGI 63
Query: 62  SHVNISSVRV-EDSGIYQCTATNRVGSQTHS-ADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
           S + I  VR   D   Y+C A N VG    + A + +Y+    P    ++T    +  + 
Sbjct: 64  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
            G    + C    G+P   I W+KN   + +S+   +++        L I        G 
Sbjct: 124 VGHTVLMTCKAI-GNPTPNIYWIKNQTKVDMSNPRYSLKD-----GFLQIENSREEDQGK 177
Query: 179 YTCVASNTVASDN-HSSNLRVN 199
           Y CVA N++ +++  ++NL V 
Sbjct: 178 YECVAENSMGTEHSKATNLYVK 199

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 89/202 (44%), Gaps = 14/202 (6%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHG-DVI 61
           P++I K   Q ++ G   S  C A G+P P I W+ +G  ++G      +Y  L     I
Sbjct: 9   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSG---TQSRYTVLEQPGGI 65
Query: 62  SHVNISSVRV-EDSGIYQCTATNRVGSQTHS-ADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
           S + I  VR   D   Y+C A N VG    + A + +Y+    P    ++T    +  + 
Sbjct: 66  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 125
Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
            G    + C    G+P   I W+KN   + +S+   +++        L I        G 
Sbjct: 126 VGHTVLMTCKAI-GNPTPNIYWIKNQTKVDMSNPRYSLKD-----GFLQIENSREEDQGK 179
Query: 179 YTCVASNTVASDN-HSSNLRVN 199
           Y CVA N++ +++  ++NL V 
Sbjct: 180 YECVAENSMGTEHSKATNLYVK 201

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 89/193 (46%), Gaps = 22/193 (11%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
           V  +C A GNPTP ISW  +G    G+  + G  + L     S V + SV   D G Y C
Sbjct: 141 VRFRCPAAGNPTPSISWLKNGREFRGEHRIGG--IKLRHQQWSLV-MESVVPSDRGNYTC 197
Query: 80  TATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
              N+ GS  QT++ D+ +  +P +P     + +N  ++    G      C V     P 
Sbjct: 198 VVENKFGSIRQTYTLDV-LERSPHRPILQAGLPANQTAVL---GSDVEFHCKVYSDAQP- 252
Query: 138 TISWLK----NGLPILSDAE---ITIRSSGEYTSS-----LSIATLSTGHSGNYTCVASN 185
            I WLK    NG  +  D       ++++G  T+      LS+  ++   +G YTC+A N
Sbjct: 253 HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGN 312
Query: 186 TVASDNHSSNLRV 198
           ++   +HS+ L V
Sbjct: 313 SIGFSHHSAWLVV 325

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 78/172 (45%), Gaps = 22/172 (12%)
Query: 21  SLKCIATGNPTPHISWKLDGY--PLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78
           +  C     P P ISW  +     L   R+ + +    +G +++   I SV   D GIY 
Sbjct: 26  TFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE----NGQLLT---ILSVEDSDDGIYC 78
Query: 79  CTATNRVGSQTHSAD-MRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
           CTA N VG    S   ++V   P        +T    ++K+  G +A + C  T G+P  
Sbjct: 79  CTANNGVGGAVESCGALQVKMKPK-------ITRPPINVKIIEGLKAVLPC-TTMGNPKP 130
Query: 138 TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
           ++SW+K    +  ++ I +  SG    SL I  +    +G Y CVA N++ +
Sbjct: 131 SVSWIKGDSALRENSRIAVLESG----SLRIHNVQKEDAGQYRCVAKNSLGT 178

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 21/181 (11%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
           V  +C A GNPTP ISW  +G    G+  + G  + L     S V + SV   D G Y C
Sbjct: 33  VRFRCPAAGNPTPSISWLKNGREFRGEHRIGG--IKLRHQQWSLV-MESVVPSDRGNYTC 89
Query: 80  TATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
              N+ GS  QT++ D+ +  +P +P     + +N  ++    G      C V     P 
Sbjct: 90  VVENKFGSIRQTYTLDV-LERSPHRPILQAGLPANQTAV---LGSDVEFHCKVYSDAQP- 144
Query: 138 TISWLK-----------NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
            I WLK           +G P ++  +  I  S E    L +A +S    G Y C A+N 
Sbjct: 145 HIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNF 204
Query: 187 V 187
           +
Sbjct: 205 I 205

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
           T+Q G    + C  +G PTP +SW+LDG P+  D       M +  + +  + I  V   
Sbjct: 20  TVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS---AHKMLVRENGVHSLIIEPVTSR 76
Query: 73  DSGIYQCTATNRVGSQTHSADMRV 96
           D+GIY C ATNR G  + S ++ V
Sbjct: 77  DAGIYTCIATNRAGQNSFSLELVV 100

>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule Type 1 Length = 209

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 31/198 (15%)
Query: 19  PVSLKCIATGNPTPHISWKLDGYPLAGD--RFVM--GQYMSLHGDVISH----VNISSVR 70
           PV L C  +G  +P + WK D     GD  R V    +  + + D ++     +   SV 
Sbjct: 21  PVKLSCAYSGFSSPRVEWKFD----QGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76
Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS----GDRAGV 126
            ED+G Y C  +   G+      +++         + LV  +  ++ + S    G+RA +
Sbjct: 77  REDTGTYTCMVSEEGGNSYGEVKVKL---------IVLVPPSKPTVNIPSSATIGNRAVL 127
Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEIT-IRSSGEY-----TSSLSIATLSTGHSGNYT 180
            C    G PP   +W K+G+ + ++ + T   S+  Y     T  L    LS   +G Y+
Sbjct: 128 TCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYS 187
Query: 181 CVASNTVASDNHSSNLRV 198
           C A N   +   S+ +R+
Sbjct: 188 CEARNGYGTPMTSNAVRM 205

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 21/183 (11%)
Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISH-VNISSVRV 71
           T + G    L C   G P P I W    Y   G   +  +   +  D  +H + + +   
Sbjct: 18  TTKLGEAAQLSCQIVGRPLPDIKW----YRF-GKELIQSRKYKMSSDGRTHTLTVMTEEQ 72
Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDA----PGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
           ED G+Y C ATN VG    S+ + +       PG P   K   +   ++++H        
Sbjct: 73  EDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH-------- 124
Query: 128 CLVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
            ++  G P   ++W  +G  +L ++E ITI ++  YT  +        H+G Y    SN 
Sbjct: 125 -VMYIGRPVPAMTWF-HGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNV 182
Query: 187 VAS 189
             +
Sbjct: 183 FGT 185

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 98  DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR 157
           +APG  +++K VT+         G+ A + C +  G P   I W + G  ++   +  + 
Sbjct: 6   EAPGIRKEMKDVTTKL-------GEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMS 57
Query: 158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196
           S G  T +L++ T      G YTC+A+N V     SS L
Sbjct: 58  SDGR-THTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL 95

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 22/193 (11%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMG-QYMSLHGDVISHVNISSVRVEDSGIYQ 78
           V  +C A GNP P + W  +G     +  + G +  + H  +I    + SV   D G Y 
Sbjct: 29  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKGNYT 84
Query: 79  CTATNRVGSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
           C   N  GS  H+  + V + +P +P     + +N+ ++    GD   V  + +   P  
Sbjct: 85  CVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP-- 140
Query: 138 TISWLK-----------NGLPILSDAEIT-IRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
            I W+K           +GLP L   +   + ++ +    L I  ++   +G YTC+A N
Sbjct: 141 HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGN 200
Query: 186 TVASDNHSSNLRV 198
           ++    HS+ L V
Sbjct: 201 SIGISFHSAWLTV 213

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+ WLKNG     +  I          SL + ++     GNYTCV  N   S NH
Sbjct: 37  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
           + +L V E +    I  L  G   N + V    V
Sbjct: 97  TYHLDVVERSPHRPI--LQAGLPANASTVVGGDV 128

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 22/193 (11%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMG-QYMSLHGDVISHVNISSVRVEDSGIYQ 78
           V  +C A GNP P + W  +G     +  + G +  + H  +I    + SV   D G Y 
Sbjct: 28  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKGNYT 83
Query: 79  CTATNRVGSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
           C   N  GS  H+  + V + +P +P     + +N+ ++    GD   V  + +   P  
Sbjct: 84  CVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP-- 139
Query: 138 TISWLK-----------NGLPILSDAEIT-IRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
            I W+K           +GLP L   +   + ++ +    L I  ++   +G YTC+A N
Sbjct: 140 HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGN 199
Query: 186 TVASDNHSSNLRV 198
           ++    HS+ L V
Sbjct: 200 SIGISFHSAWLTV 212

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+ WLKNG     +  I          SL + ++     GNYTCV  N   S NH
Sbjct: 36  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 95
Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
           + +L V E +    I  L  G   N + V    V
Sbjct: 96  TYHLDVVERSPHRPI--LQAGLPANASTVVGGDV 127

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 20/194 (10%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
           V  KC ++G P P + W  +G     D  + G  +         + + SV   D G Y C
Sbjct: 34  VKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRY---ATWSIIMDSVVPSDKGNYTC 90
Query: 80  TATNRVGSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT 138
              N  GS  H+  + V + +P +P     + +N     V  G      C V   DP   
Sbjct: 91  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANK---TVALGSNVEFMCKVY-SDPQPH 146
Query: 139 ISWLK----NGLPILSD--------AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
           I WLK    NG  I  D            + ++ +    L +  +S   +G YTC+A N+
Sbjct: 147 IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 206
Query: 187 VASDNHSSNLRVNE 200
           +   +HS+ L V E
Sbjct: 207 IGLSHHSAWLTVLE 220

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G P  T+ WLKNG     D  I        T S+ + ++     GNYTC+  N   S NH
Sbjct: 42  GTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 101
Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
           +  L V E +    I  L  G   N T    + V
Sbjct: 102 TYQLDVVERSPHRPI--LQAGLPANKTVALGSNV 133

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 20/194 (10%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
           V  KC ++G P P + W  +G     D  + G  +         + + SV   D G Y C
Sbjct: 34  VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY---ATWSIIMDSVVPSDKGNYTC 90
Query: 80  TATNRVGSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT 138
              N  GS  H+  + V + +P +P     + +N     V  G      C V   DP   
Sbjct: 91  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANK---TVALGSNVEFMCKVY-SDPQPH 146
Query: 139 ISWLK----NGLPILSD--------AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
           I WLK    NG  I  D            + ++ +    L +  +S   +G YTC+A N+
Sbjct: 147 IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 206
Query: 187 VASDNHSSNLRVNE 200
           +   +HS+ L V E
Sbjct: 207 IGLSHHSAWLTVLE 220

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G P  T+ WLKNG     D  I        T S+ + ++     GNYTC+  N   S NH
Sbjct: 42  GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 101
Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
           +  L V E +    I  L  G   N T    + V
Sbjct: 102 TYQLDVVERSPHRPI--LQAGLPANKTVALGSNV 133

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 8/183 (4%)
Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
           G   + +   +G P P +SW  DG  ++    + G  +S   D  + + I +V   +SG 
Sbjct: 20  GSTATFEAHISGFPVPEVSWFRDGQVISTST-LPGVQISFS-DGRAKLTIPAVTKANSGR 77
Query: 77  YQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP 136
           Y   ATN  G  T +A++ V      P  V+ +    +S+ V  G +  +Q  VT G P 
Sbjct: 78  YSLKATNGSGQATSTAELLVKAETAPPNFVQRL----QSMTVRQGSQVRLQVRVT-GIPT 132
Query: 137 LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196
             + + ++G  I S  +  I   G+   SL IA      SG Y+  A+N+V     ++ L
Sbjct: 133 PVVKFYRDGAEIQSSLDFQISQEGDL-YSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Query: 197 RVN 199
            V 
Sbjct: 192 LVQ 194

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 78/194 (40%), Gaps = 20/194 (10%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
           V  KC ++G P P + W  +G     D  + G  +         + + SV   D G Y C
Sbjct: 35  VKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRY---ATWSIIMDSVVPSDKGNYTC 91
Query: 80  TATNRVGSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT 138
              N  GS  H+  + V + +P +P     + +N     V  G      C V   DP   
Sbjct: 92  IVENEYGSINHTYQLDVVERSPHRPILQAGLPANK---TVALGSNVEFMCKVY-SDPQPH 147
Query: 139 ISWLK----NGLPILSD--------AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
           I WLK    NG  I  D            + ++ +    L +  +S   +G YTC+A N+
Sbjct: 148 IQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNS 207
Query: 187 VASDNHSSNLRVNE 200
           +   +HS+ L V E
Sbjct: 208 IGLSHHSAWLTVLE 221

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G P  T+ WLKNG     D  I        T S+ + ++     GNYTC+  N   S NH
Sbjct: 43  GTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGNYTCIVENEYGSINH 102
Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
           +  L V E +    I  L  G   N T    + V
Sbjct: 103 TYQLDVVERSPHRPI--LQAGLPANKTVALGSNV 134

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMG-QYMSLHGDVISHVNISSVRVEDSGIYQ 78
           V  +C A GNP P + W  +G     +  + G +  + H  +I    + SV   D G Y 
Sbjct: 29  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKGNYT 84
Query: 79  CTATNRVGSQTHSADMRVYDA-PGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
           C   N  GS  H+  + V +  P +P     + +N+ ++    GD   V  + +   P  
Sbjct: 85  CVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP-- 140
Query: 138 TISWLK-----------NGLPILSDAEIT-IRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
            I W+K           +GLP L   +   + ++ +    L I  ++   +G YTC+A N
Sbjct: 141 HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGN 200
Query: 186 TVASDNHSSNLRV 198
           ++    HS+ L V
Sbjct: 201 SIGISFHSAWLTV 213

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 32/68 (47%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+ WLKNG     +  I          SL + ++     GNYTCV  N   S NH
Sbjct: 37  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 193 SSNLRVNE 200
           + +L V E
Sbjct: 97  TYHLDVVE 104

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 8/183 (4%)
Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
           G   + +   +G P P +SW  DG  ++    + G  +S   D  + + I +V   +SG 
Sbjct: 20  GSTATFEAHISGFPVPEVSWFRDGQVISTST-LPGVQISFS-DGRAKLTIPAVTKANSGR 77
Query: 77  YQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP 136
           Y   ATN  G  T +A++ V      P  V+ +    +S+ V  G +  +Q  VT G P 
Sbjct: 78  YSLKATNGSGQATSTAELLVKAETAPPNFVQRL----QSMTVRQGSQVRLQVRVT-GIPT 132
Query: 137 LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196
             + + ++G  I S  +  I   G+   SL IA      SG Y+  A+N+V     ++ L
Sbjct: 133 PVVKFYRDGAEIQSSLDFQISQEGDL-YSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
Query: 197 RVN 199
            V 
Sbjct: 192 LVQ 194

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 12/198 (6%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P    K +   L  G   + KC  TG     I+W  D   +       G Y     +  +
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG----GNYKMTLVENTA 61
Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            + +  V   D+G Y C A+N  G  + SA + V + P      + +     S  V   +
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP------RFIKKLEPSRIVKQDE 115
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
               +C +  G P + + W K+   I   ++  + S  E  + L +  LS   SG+YTC 
Sbjct: 116 HTRYECKIG-GSPEIKVLWYKDETEIQESSKFRM-SFVESVAVLEMYNLSVEDSGDYTCE 173
Query: 183 ASNTVASDNHSSNLRVNE 200
           A N   S + S++L+V E
Sbjct: 174 AHNAAGSASSSTSLKVKE 191

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 61/220 (27%)
Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
           S+ +  G+    +C VT G  P+ I+W K+   I       + +  E T++L++  ++ G
Sbjct: 14  SVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKM-TLVENTATLTVLKVTKG 71
Query: 175 HSGNYTCVASNT---------------------------VASDNH--------------- 192
            +G YTC ASN                            V  D H               
Sbjct: 72  DAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV 131
Query: 193 -----------SSNLRVN--EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
                      SS  R++  E  + L +  LS   SG+YTC A N   S + S++L+V  
Sbjct: 132 LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
Query: 240 PP--HIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKN 277
           PP     P    E ++G    + C +Q G  P  + W+K+
Sbjct: 192 PPVFRKKPHPV-ETLKGADVHLECELQ-GTPPFQVSWHKD 229

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 171 LSTGHSGNYTCVASNTV------ASDNHS------SNLRVNEYTSSLSIATLSTGHSGNY 218
           L+ G SG + C  + T       A DN          + + E T++L++  ++ G +G Y
Sbjct: 17  LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 76
Query: 219 TCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVR-------TQVACVVQSGDLPLS 271
           TC ASN    D+ S+ L V  PP      F + +E  R       T+  C +  G   + 
Sbjct: 77  TCYASNVAGKDSCSAQLGVQEPPR-----FIKKLEPSRIVKQDEHTRYECKI-GGSPEIK 130
Query: 272 LQWYKNGLAISQ 283
           + WYK+   I +
Sbjct: 131 VLWYKDETEIQE 142

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 86/198 (43%), Gaps = 12/198 (6%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P    K +   L  G   + KC  TG     I+W  D   +       G Y     +  +
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG----GNYKMTLVENTA 61
Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            + +  V   D+G Y C A+N  G  + SA + V  AP  P+ +K +   SR +K     
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV-QAP--PRFIKKLEP-SRIVKQDEHT 117
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
           R   +C +  G P + + W K+   I   ++  + S  E  + L +  LS   SG+YTC 
Sbjct: 118 R--YECKIG-GSPEIKVLWYKDETEIQESSKFRM-SFVESVAVLEMYNLSVEDSGDYTCE 173
Query: 183 ASNTVASDNHSSNLRVNE 200
           A N   S + S++L+V E
Sbjct: 174 AHNAAGSASSSTSLKVKE 191

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 61/220 (27%)
Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
           S+ +  G+    +C VT G  P+ I+W K+   I       + +  E T++L++  ++ G
Sbjct: 14  SVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKM-TLVENTATLTVLKVTKG 71
Query: 175 HSGNYTCVASNT---------------------------VASDNH--------------- 192
            +G YTC ASN                            V  D H               
Sbjct: 72  DAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV 131
Query: 193 -----------SSNLRVN--EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
                      SS  R++  E  + L +  LS   SG+YTC A N   S + S++L+V  
Sbjct: 132 LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
Query: 240 PP--HIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKN 277
           PP     P    E ++G    + C +Q G  P  + W+K+
Sbjct: 192 PPVFRKKPHPV-ETLKGADVHLECELQ-GTPPFQVSWHKD 229

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 171 LSTGHSGNYTCVASNTV------ASDNHS------SNLRVNEYTSSLSIATLSTGHSGNY 218
           L+ G SG + C  + T       A DN          + + E T++L++  ++ G +G Y
Sbjct: 17  LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 76
Query: 219 TCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVR-------TQVACVVQSGDLPLS 271
           TC ASN    D+ S+ L V  PP      F + +E  R       T+  C +  G   + 
Sbjct: 77  TCYASNVAGKDSCSAQLGVQAPPR-----FIKKLEPSRIVKQDEHTRYECKI-GGSPEIK 130
Query: 272 LQWYKNGLAISQ 283
           + WYK+   I +
Sbjct: 131 VLWYKDETEIQE 142

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 80/204 (39%), Gaps = 37/204 (18%)
Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMG---QYMSLHG 58
           +PQ  ++FI   L      SL C+A   PTP   W          +F+ G   +   +  
Sbjct: 217 NPQDKHQFIDVEL--ASSYSLLCMAQSYPTPSFRWY---------KFIEGTTRKQAVVLN 265
Query: 59  DVISHVN----ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSR 114
           D +  V+    I    VEDSG Y C   N VG ++    + V      P   K+   +  
Sbjct: 266 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV----TAPLSAKI---DPP 318
Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
           +  V  G  A   C  T G+P  T+SW+K+G  I           G   S L I ++   
Sbjct: 319 TQTVDFGRPAVFTCQYT-GNPIKTVSWMKDGKAI-----------GHSESVLRIESVKKE 366
Query: 175 HSGNYTCVASNTVASDNHSSNLRV 198
             G Y C   N   S   S+ L++
Sbjct: 367 DKGMYQCFVRNDRESAEASAELKL 390

>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor Receptor 2 In Complex With Fgf1 Length = 216

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 22/193 (11%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMG-QYMSLHGDVISHVNISSVRVEDSGIYQ 78
           V  +C A GNP P   W  +G     +  + G +  + H  +I      SV   D G Y 
Sbjct: 29  VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIX----ESVVPSDKGNYT 84
Query: 79  CTATNRVGSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
           C   N  GS  H+  + V + +P +P     + +N+ ++    GD   V  + +   P  
Sbjct: 85  CVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP-- 140
Query: 138 TISWLK-----------NGLPILSDAEIT-IRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
            I W+K           +GLP L   +   + ++ +    L I  ++   +G YTC+A N
Sbjct: 141 HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGN 200
Query: 186 TVASDNHSSNLRV 198
           ++    HS+ L V
Sbjct: 201 SIGISFHSAWLTV 213

>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure Length = 424

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 46  DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQD 105
           +R +  Q  S     +S + I  V   D G+Y C A++ + ++ +S  +RV++ P     
Sbjct: 144 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF---- 199
Query: 106 VKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSS 165
           V   +     ++   G+R  +      G PP  I W KNG+P+ S+   TI++       
Sbjct: 200 VAFGSGMESLVEATVGERVRIPAKYL-GYPPPEIKWYKNGIPLESNH--TIKAG----HV 252
Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHS 193
           L+I  +S   +GNYT + +N ++ +  S
Sbjct: 253 LTIMEVSERDTGNYTVILTNPISKEKQS 280

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 11/148 (7%)
Query: 46  DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQD 105
           +R +  Q  S     +S + I  V   D G+Y C A++ + ++ +S  +RV++ P     
Sbjct: 274 NRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPF---- 329
Query: 106 VKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSS 165
           V   +     ++   G+R  +      G PP  I W KNG+P+ S+   TI++       
Sbjct: 330 VAFGSGMESLVEATVGERVRIPAKYL-GYPPPEIKWYKNGIPLESNH--TIKAG----HV 382
Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHS 193
           L+I  +S   +GNYT + +N ++ +  S
Sbjct: 383 LTIMEVSERDTGNYTVILTNPISKEKQS 410

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 28/195 (14%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMG-QYMSLHGDVISHVNISSVRVEDSGIYQ 78
           V  +C A GNP P + W  +G     +  + G +  + H  +I    + SV   D G Y 
Sbjct: 37  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKGNYT 92
Query: 79  CTATNRVGSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
           C   N  GS  H+  + V + +P +P     + +N+ +  V  GD   V  + +   P  
Sbjct: 93  CVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAST--VVGGDVEFVCKVYSDAQP-- 148
Query: 138 TISWLK-----------NGLPILSDAEITIRSSGEYTSS---LSIATLSTGHSGNYTCVA 183
            I W+K           +GLP L      ++ SG  +S+   L++  ++   +G Y C  
Sbjct: 149 HIQWIKHVEKNGSKYGPDGLPYLK----VLKHSGINSSNAEVLALFNVTEADAGEYICKV 204
Query: 184 SNTVASDNHSSNLRV 198
           SN +   N S+ L V
Sbjct: 205 SNYIGQANQSAWLTV 219

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+ WLKNG     +  I          SL + ++     GNYTCV  N   S NH
Sbjct: 45  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104
Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
           + +L V E +    I  L  G   N + V    V
Sbjct: 105 TYHLDVVERSPHRPI--LQAGLPANASTVVGGDV 136

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 14/80 (17%)
Query: 20  VSLKCIATGNPTPHISWK--LDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77
           V+L+C A GNP P I W+  L+  P   +       +S  G V+   NI   ++ED GIY
Sbjct: 131 VTLECFALGNPVPDIRWRKVLEPMPSTAE-------ISTSGAVLKIFNI---QLEDEGIY 180
Query: 78  QCTATNRVGSQTHSADMRVY 97
           +C A N  G   H A  R+Y
Sbjct: 181 ECEAENIRGKDKHQA--RIY 198

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 91/207 (43%), Gaps = 28/207 (13%)
Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           S PQ   K    T + G  ++  C A+G+P P ISW  +G  +  +     +Y+ L G  
Sbjct: 6   SMPQ---KSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE----KYI-LKGSN 57
Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
            + + + ++   D G Y C ATN+ G     A ++V+    QP  ++L    +     + 
Sbjct: 58  -TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF---VQPHIIQLKNETT-----YE 108
Query: 121 GDRAGVQCLVTKGDPPLTISWLK--NGLPILS-----DAEITIRSSGEY-TSSLSIATLS 172
             +  + C   +G+P   I+W +  +G          D  I ++  G++ +SSL I  + 
Sbjct: 109 NGQVTLVC-DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVK--GQHGSSSLHIKDVK 165
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVN 199
              SG Y C A++ +     S  L + 
Sbjct: 166 LSDSGRYDCEAASRIGGHQKSMYLDIE 192

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 72/186 (38%), Gaps = 35/186 (18%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMG---QYMSLHGDVISHVN----ISSVRVE 72
           +SL C A G P P   W          +F+ G   +   +  D +  V+    I    VE
Sbjct: 236 ISLLCPAQGFPAPSFRWY---------KFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 286
Query: 73  DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTK 132
           DSG Y C   N VG ++    + V      P   K+   +  +  V  G  A   C  T 
Sbjct: 287 DSGKYLCVVNNSVGGESVETVLTV----TAPLSAKI---DPPTQTVDFGRPAVFTCQYT- 338
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+SW+K+G  I           G   S L I ++     G Y C   N   S   
Sbjct: 339 GNPIKTVSWMKDGKAI-----------GHSESVLRIESVKKEDKGMYQCFVRNDRESAEA 387
Query: 193 SSNLRV 198
           S+ L++
Sbjct: 388 SAELKL 393

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 79/203 (38%), Gaps = 37/203 (18%)
Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMG---QYMSLHGD 59
           P L+ K ++  L     +SL C A G P P   W          +F+ G   +   +  D
Sbjct: 215 PALVQKPLE--LMVAHTISLLCPAQGFPAPSFRWY---------KFIEGTTRKQAVVLND 263
Query: 60  VISHVN----ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRS 115
            +  V+    I    VEDSG Y C   N VG ++    + V      P   K+   +  +
Sbjct: 264 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV----TAPLSAKI---DPPT 316
Query: 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
             V  G  A   C  T G+P  T+SW+K+G  I           G   S L I ++    
Sbjct: 317 QTVDFGRPAVFTCQYT-GNPIKTVSWMKDGKAI-----------GHSESVLRIESVKKED 364
Query: 176 SGNYTCVASNTVASDNHSSNLRV 198
            G Y C   N   S   S+ L++
Sbjct: 365 KGMYQCFVRNDRESAEASAELKL 387

>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation Endproducts (Rage) Length = 581

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 22/153 (14%)
Query: 13  TLQPGPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHG----DVISHV--- 64
           T + G P+ LKC  A   P   + WKL+       R    + +S  G    D ++ V   
Sbjct: 377 TARIGEPLVLKCKGAPKKPPQRLEWKLNT-----GRTEAWKVLSPQGGGPWDSVARVLPN 431
Query: 65  ---NISSVRVEDSGIYQCTATNRVGSQTHS-ADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
               + +V ++D GI++C A NR G +T S   +RVY  PG+P+    +  ++  +    
Sbjct: 432 GSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPE----IVDSASELTAGV 487
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE 153
            ++ G  C+     P  T+SW  +G P++ + +
Sbjct: 488 PNKVGT-CVSEGSYPAGTLSWHLDGKPLVPNEK 519

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMG-QYMSLHGDVISHVNISSVRVEDSGIYQ 78
           V  +C A GNP P + W  +G     +  + G +  + H  +I    + SV   D G Y 
Sbjct: 29  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKGNYT 84
Query: 79  CTATNRVGSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
           C   N  GS  H+  + V + +  +P     + +N+ ++    GD   V  + +   P  
Sbjct: 85  CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVV--GGDVEFVCKVYSDAQP-- 140
Query: 138 TISWLK-----------NGLPILSDAEIT-IRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
            I W+K           +GLP L   +   + ++ +    L I  ++   +G YTC+A N
Sbjct: 141 HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGN 200
Query: 186 TVASDNHSSNLRV 198
           ++    HS+ L V
Sbjct: 201 SIGISFHSAWLTV 213

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+ WLKNG     +  I          SL + ++     GNYTCV  N   S NH
Sbjct: 37  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 96
Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
           + +L V E +    I  L  G   N + V    V
Sbjct: 97  TYHLDVVERSRHRPI--LQAGLPANASTVVGGDV 128

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 22/193 (11%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMG-QYMSLHGDVISHVNISSVRVEDSGIYQ 78
           V  +C A GNP P + W  +G     +  + G +  + H  +I    + SV   D G Y 
Sbjct: 27  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKGNYT 82
Query: 79  CTATNRVGSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
           C   N  GS  H+  + V + +  +P     + +N+ +  V  GD   V  + +   P  
Sbjct: 83  CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAST--VVGGDVEFVCKVYSDAQP-- 138
Query: 138 TISWLK-----------NGLPILSDAEIT-IRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
            I W+K           +GLP L   +   + ++ +    L I  ++   +G YTC+A N
Sbjct: 139 HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGN 198
Query: 186 TVASDNHSSNLRV 198
           ++    HS+ L V
Sbjct: 199 SIGISFHSAWLTV 211

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+ WLKNG     +  I          SL + ++     GNYTCV  N   S NH
Sbjct: 35  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 94
Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
           + +L V E +    I  L  G   N + V    V
Sbjct: 95  TYHLDVVERSRHRPI--LQAGLPANASTVVGGDV 126

>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory Responses To Dna Length = 223

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 22/149 (14%)
Query: 17  GPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHG----DVISHV------N 65
           G P+ LKC  A   P   + WKL+       R    + +S  G    D ++ V       
Sbjct: 13  GEPLVLKCKGAPKKPPQRLEWKLNT-----GRTEAWKVLSPQGGGPWDSVARVLPNGSLF 67
Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSA-DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRA 124
           + +V ++D GI++C A NR G +T S   +RVY  PG+P+ V   +  +  +    G   
Sbjct: 68  LPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGT-- 125
Query: 125 GVQCLVTKGDPPLTISWLKNGLPILSDAE 153
              C+     P  T+SW  +G P++ + +
Sbjct: 126 ---CVSEGSYPAGTLSWHLDGKPLVPNEK 151

>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain Length = 219

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 22/149 (14%)
Query: 17  GPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHG----DVISHV------N 65
           G P+ LKC  A   P   + WKL+       R    + +S  G    D ++ V       
Sbjct: 10  GEPLVLKCKGAPKKPPQRLEWKLNT-----GRTEAWKVLSPQGGGPWDSVARVLPNGSLF 64
Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHS-ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRA 124
           + +V ++D GI++C A NR G +T S   +RVY  PG+P+ V   +  +  +    G   
Sbjct: 65  LPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGT-- 122
Query: 125 GVQCLVTKGDPPLTISWLKNGLPILSDAE 153
              C+     P  T+SW  +G P++ + +
Sbjct: 123 ---CVSEGSYPAGTLSWHLDGKPLVPNEK 148

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 72  EDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
           ED G+Y C   N VG  Q HS  + V  AP   Q  + V      I V  G    + C V
Sbjct: 280 EDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKV------IVVKQGQDVTIPCKV 333
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
           T G P   + W  N  P LS    T+  SG     L I  +  G  G Y C A+N     
Sbjct: 334 T-GLPAPNVVWSHNAKP-LSGGRATVTDSG-----LVIKGVKNGDKGYYGCRATNEHGDK 386
Query: 191 NHSSNLRVN 199
              + ++VN
Sbjct: 387 YFETLVQVN 395

>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex Length = 230

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMG-QYMSLHGDVISHVNISSVRVEDSGIYQ 78
           V  +C A GNP P   W  +G     +  + G +  + H  +I      SV   D G Y 
Sbjct: 36  VKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIX----ESVVPSDKGNYT 91
Query: 79  CTATNRVGSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
           C   N  GS  H+  + V + +P +P     + +N+ +  V  GD   V  + +   P  
Sbjct: 92  CVVENEYGSINHTYHLDVVERSPHRPILQAGLPANAST--VVGGDVEFVCKVYSDAQP-- 147
Query: 138 TISWLK-----------NGLPILSDAEITIRSSGEYTSS---LSIATLSTGHSGNYTCVA 183
            I W+K           +GLP L      ++ SG  +S+   L++  ++   +G Y C  
Sbjct: 148 HIQWIKHVEKNGSKYGPDGLPYLK----VLKHSGINSSNAEVLALFNVTEADAGEYICKV 203
Query: 184 SNTVASDNHSSNLRV 198
           SN +   N S+ L V
Sbjct: 204 SNYIGQANQSAWLTV 218

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 9   FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISS 68
            +  T   G  V+L C A G P P +SW  DG P+  +         +  D  S + I +
Sbjct: 203 IVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEE--EDDEKHIFSDDSSELTIRN 260
Query: 69  VRVEDSGIYQCTATNRVGSQTHSADMRVY 97
           V   D   Y C A N+ G Q  S  ++V+
Sbjct: 261 VDKNDEAEYVCIAENKAGEQDASIHLKVF 289

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 80/189 (42%), Gaps = 12/189 (6%)
Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           Q  + G    + C    +  P I WK  G  +   + V  +++ L     +++ I  ++ 
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDV--RFIVLSN---NYLQIRGIKK 164
Query: 72  EDSGIYQCTATNRVGSQTHSADMRV-YDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
            D G Y+C        + +  D++V  + P   Q  + + + + ++    G    + C  
Sbjct: 165 TDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL----GQSVTLVCD- 219
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRS-SGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
             G P  T+SW K+G PI ++ E   +    + +S L+I  +       Y C+A N    
Sbjct: 220 ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE 279
Query: 190 DNHSSNLRV 198
            + S +L+V
Sbjct: 280 QDASIHLKV 288

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDV 60
          P ++     QTL       LKC ATG+P P ISW  +G+   G   R  + +  +L    
Sbjct: 9  PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ--- 65
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDA 99
               I ++R+ D+G Y C AT+  G  + SA + V ++
Sbjct: 66 -----IKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 28/195 (14%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMG-QYMSLHGDVISHVNISSVRVEDSGIYQ 78
           V  +C A GNP P + W  +G     +  + G +  + H  +I    + SV   D G Y 
Sbjct: 37  VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKGNYT 92
Query: 79  CTATNRVGSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137
           C   N  GS  H+  + V + +  +P     + +N+ +  V  GD   V  + +   P  
Sbjct: 93  CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANAST--VVGGDVEFVCKVYSDAQP-- 148
Query: 138 TISWLK-----------NGLPILSDAEITIRSSGEYTSS---LSIATLSTGHSGNYTCVA 183
            I W+K           +GLP L      ++ SG  +S+   L++  ++   +G Y C  
Sbjct: 149 HIQWIKHVEKNGSKYGPDGLPYLK----VLKHSGINSSNAEVLALFNVTEADAGEYICKV 204
Query: 184 SNTVASDNHSSNLRV 198
           SN +   N S+ L V
Sbjct: 205 SNYIGQANQSAWLTV 219

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+ WLKNG     +  I          SL + ++     GNYTCV  N   S NH
Sbjct: 45  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 104
Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
           + +L V E +    I  L  G   N + V    V
Sbjct: 105 TYHLDVVERSRHRPI--LQAGLPANASTVVGGDV 136

>pdb|2L7U|A Chain A, Structure Of Cel-Pep-Rage V Domain Complex Length = 105

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 17/100 (17%)
Query: 17  GPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHG----DVISHV------N 65
           G P+ LKC  A   P   + WKL+       R    + +S  G    D ++ V       
Sbjct: 11  GEPLVLKCKGAPKKPPQRLEWKLNT-----GRTEAWKVLSPQGGGPWDSVARVLPNGSLF 65
Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSA-DMRVYDAPGQPQ 104
           + +V ++D GI++C A NR G +T S   +RVY  PG+P+
Sbjct: 66  LPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPE 105

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
          P +      QT   G  + + C A+GNP P I W  D   L  D  ++ +      D   
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK------DGNR 64
Query: 63 HVNISSVRVEDSGIYQCTATNRVG 86
          ++ I  VR ED G+Y C A + +G
Sbjct: 65 NLTIRRVRKEDEGLYTCQACSVLG 88

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 13/182 (7%)
Query: 21  SLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78
           +L C  TG+P P + W   G  +  D  ++ + ++   +  +I    I+SV  +D+ +YQ
Sbjct: 21  TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI----IASVTDDDATVYQ 76
Query: 79  CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS--GDRAGVQCLVTKGDPP 136
             ATN+ GS + +A + V      P  + L  +      VH+  G+   ++   + G P 
Sbjct: 77  VRATNQGGSVSGTASLEVE----VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS-GKPD 131
Query: 137 LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196
             I+W K    I ++    +  +  +TS +    +    +G Y   A N    D  +  L
Sbjct: 132 PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 191
Query: 197 RV 198
            V
Sbjct: 192 DV 193

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 26/194 (13%)
Query: 12  QTLQPGPPVSLKCIATGNPTPHISW---KLDGYPLAGDRFVMGQYMSLHGDVISHVNISS 68
           Q  + G    + C  + +P P +SW     +   ++ +RF M    +L    I+      
Sbjct: 108 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINK----- 162
Query: 69  VRVEDSGIYQCTATNRVGSQTHSADMRVY----DAPGQPQDVKLVTSNSRSIKVHSGDRA 124
               D GIY+C        +    D+ V      A   PQ        S +     G+  
Sbjct: 163 ---SDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQ-------KSFNATAERGEEM 212
Query: 125 GVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184
              C  + G P   ISW +NG  I  + +  ++ S    + L++  +     G Y C A+
Sbjct: 213 TFSCRAS-GSPEPAISWFRNGKLIEENEKYILKGSN---TELTVRNIINSDGGPYVCRAT 268
Query: 185 NTVASDNHSSNLRV 198
           N    D   + L+V
Sbjct: 269 NKAGEDEKQAFLQV 282

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 13/182 (7%)
Query: 21  SLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78
           +L C  TG+P P + W   G  +  D  ++ + ++   +  +I    I+SV  +D+ +YQ
Sbjct: 23  TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI----IASVTDDDATVYQ 78
Query: 79  CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS--GDRAGVQCLVTKGDPP 136
             ATN+ GS + +A + V      P  + L  +      VH+  G+   ++   + G P 
Sbjct: 79  VRATNQGGSVSGTASLEVE----VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS-GKPD 133
Query: 137 LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196
             I+W K    I ++    +  +  +TS +    +    +G Y   A N    D  +  L
Sbjct: 134 PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 197 RV 198
            V
Sbjct: 194 DV 195

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 72/194 (37%), Gaps = 26/194 (13%)
Query: 12  QTLQPGPPVSLKCIATGNPTPHISW---KLDGYPLAGDRFVMGQYMSLHGDVISHVNISS 68
           Q  + G    + C  + +P P +SW     +   ++ +RF M    +L    I+      
Sbjct: 12  QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINK----- 66
Query: 69  VRVEDSGIYQCTATNRVGSQTHSADM----RVYDAPGQPQDVKLVTSNSRSIKVHSGDRA 124
               D GIY+C        +    D+     V  A   PQ        S +     G+  
Sbjct: 67  ---SDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQ-------KSFNATAERGEEM 116
Query: 125 GVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184
              C  + G P   ISW +NG  I  + +  ++ S    + L++  +     G Y C A+
Sbjct: 117 TFSCRAS-GSPEPAISWFRNGKLIEENEKYILKGS---NTELTVRNIINSDGGPYVCRAT 172
Query: 185 NTVASDNHSSNLRV 198
           N    D   + L+V
Sbjct: 173 NKAGEDEKQAFLQV 186

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 79/182 (43%), Gaps = 13/182 (7%)
Query: 21  SLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78
           +L C  TG+P P + W   G  +  D  ++ + ++   +  +I    I+SV  +D+ +YQ
Sbjct: 23  TLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI----IASVTDDDATVYQ 78
Query: 79  CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS--GDRAGVQCLVTKGDPP 136
             ATN+ GS + +A + V      P  + L  +      VH+  G+   ++   + G P 
Sbjct: 79  VRATNQGGSVSGTASLEV----EVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFS-GKPD 133
Query: 137 LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196
             I+W K    I ++    +  +  +TS +    +    +G Y   A N    D  +  L
Sbjct: 134 PVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
Query: 197 RV 198
            V
Sbjct: 194 DV 195

>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of Coxsackie & Adenovirus Receptor From Mouse (Mcar) Length = 214

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 24/167 (14%)
Query: 44  AGDRFVMGQYMSLHGDV----------ISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD 93
           +GD+     Y  L G V           + +N++++++ D G YQC      G       
Sbjct: 56  SGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFL 115
Query: 94  MRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE 153
           + V     +P   +     S  I    G+   ++C   +G  PL   W K     LSD++
Sbjct: 116 LTVL---VKPSGTRCFVDGSEEI----GNDFKLKCEPKEGSLPLQFEWQK-----LSDSQ 163
Query: 154 -ITIRSSGEYTSS-LSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
            +      E TS  +S+   S+ +SG Y+C   N V SD     L V
Sbjct: 164 TMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And Adenovirus Receptor, Car Length = 225

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 24/167 (14%)
Query: 44  AGDRFVMGQYMSLHGDV----------ISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD 93
           +GD+     Y  L G V           + +N++++++ D G YQC      G       
Sbjct: 58  SGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFL 117
Query: 94  MRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE 153
           + V     +P   +     S  I    G+   ++C   +G  PL   W K     LSD++
Sbjct: 118 LTVL---VKPSGTRCFVDGSEEI----GNDFKLKCEPKEGSLPLQFEWQK-----LSDSQ 165
Query: 154 -ITIRSSGEYTSS-LSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
            +      E TS  +S+   S+ +SG Y+C   N V SD     L V
Sbjct: 166 TMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 212

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
           + +  G    + C V  GDPP  +SWLKN   + SD    ++     T+  +I  +ST  
Sbjct: 232 VTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTAD 290
Query: 176 SGNYTCVASNTVASD 190
           SG Y  V  N   S+
Sbjct: 291 SGKYGLVVKNKYGSE 305

>pdb|2FGW|H Chain H, X-Ray Structures Of Fragments From Binding And Nonbinding Versions Of A Humanized Anti-Cd18 Antibody: Structural Indications Of The Key Role Of Vh Residues 59 To 65 Length = 232

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 30/152 (19%)
Query: 7   YKFIQQTL---QPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRFVMGQYMSLHGD 59
           Y F + T+   +  P   L+ +A  NP    T H    +D + ++ D+     YM ++  
Sbjct: 27  YTFTEYTMHWMRQAPGKGLEWVAGINPKNGGTSHNQRFMDRFTISVDKSTSTAYMQMN-- 84
Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSR----- 114
                   S+R ED+ +Y C    R     +  D+R +D  GQ   V + +++++     
Sbjct: 85  --------SLRAEDTAVYYCA---RWRGLNYGFDVRYFDVWGQGTLVTVSSASTKGPSVF 133
Query: 115 ----SIKVHSGDRAGVQCLVTKGDP-PLTISW 141
               S K  SG  A + CLV    P P+T+SW
Sbjct: 134 PLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 165

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 17/98 (17%)
Query: 8  KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISH 63
          +FIQ     ++  G    +    +G P P +SW L+G  +  D         LH  ++S 
Sbjct: 7  RFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSD--------DLHKMIVSE 58
Query: 64 VNISS-----VRVEDSGIYQCTATNRVGSQTHSADMRV 96
            + S     VR  D+G Y C A NR G  T +  + V
Sbjct: 59 KGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse Length = 212

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 22/180 (12%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI----SHVNISSVRVEDSG 75
           + L C  +G  +P + WK              Q  + + D +    S +  SSV  +D+G
Sbjct: 19  IKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNG 78
Query: 76  IYQCTATNRVGSQTH---SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTK 132
            Y C  +   G Q +   S  + V   P +P       S   S+ +  G+RA + C    
Sbjct: 79  EYTCMVSEE-GGQNYGEVSIHLTVLVPPSKP-----TISVPSSVTI--GNRAVLTCSEHD 130
Query: 133 GDPPLTISWLKNGLPIL-SDAEIT---IRSS---GEYTSSLSIATLSTGHSGNYTCVASN 185
           G PP   SW K+G+ +L +DA+ T   + SS      +  L    ++   SG Y C A N
Sbjct: 131 GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQN 190

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
           V+L C A G P P ++W  DG P+  +        +  G   S + I  V   D   Y C
Sbjct: 31  VTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDG---SELIIKKVDKSDEAEYIC 87
Query: 80  TATNRVGSQTHSADMRVY 97
            A N+ G Q  +  ++V+
Sbjct: 88  IAENKAGEQDATIHLKVF 105

>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2 Length = 189

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 31/139 (22%)
Query: 14  LQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGD-VISHVNISSVRVE 72
           L  G      C A G P       +D Y   G++ +  Q + +  + V S + I +  +E
Sbjct: 14  LSVGESKFFTCTAIGEPES-----IDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 68
Query: 73  DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI---------KVHSGDR 123
           D+GIY+C AT               DA GQ Q+  +V    + +         +   G+ 
Sbjct: 69  DAGIYRCQAT---------------DAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGED 113
Query: 124 AGVQCLVTKGDPPLTISWL 142
           A V C V+    P  +SWL
Sbjct: 114 AEVVCRVSSSPAP-AVSWL 131

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           RS+ V+ G+ A   C  T G+P  T++WL+ G  + + A   + ++ +Y S+  I+++  
Sbjct: 16  RSMTVYEGESARFSCD-TDGEPVPTVTWLRKGQVLSTSARHQV-TTTKYKSTFEISSVQA 73
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
              GNY+ V  N+         L + +
Sbjct: 74  SDEGNYSVVVENSEGKQEAEFTLTIQK 100

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           RS+ V+ G+ A   C  T G+P  T++WL+ G  + + A   + ++ +Y S+  I+++  
Sbjct: 22  RSMTVYEGESARFSC-DTDGEPVPTVTWLRKGQVLSTSARHQV-TTTKYKSTFEISSVQA 79
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
              GNY+ V  N+         L + +
Sbjct: 80  SDEGNYSVVVENSEGKQEAEFTLTIQK 106

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 22  LKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81
           L C+ATG+P P I W+ DG  ++     + Q   L   V+    I   ++ D+G Y C A
Sbjct: 28  LSCVATGSPVPTILWRKDGVLVSTQDSRIKQ---LENGVL---QIRYAKLGDTGRYTCIA 81
Query: 82  TNRVGSQTHSADMRVYD-----APGQPQDVKLVTS 111
           +   G  T SA + V +      P +P D  L+ S
Sbjct: 82  STPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPS 116

>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain Length = 100

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+ WLKNG     +  I          SL + ++     GNYTCV  N   S NH
Sbjct: 34  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 93
Query: 193 SSNLRV 198
           + +L V
Sbjct: 94  TYHLDV 99

>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The Receptor Tyrosine Kinase, Kit Length = 524

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 68/175 (38%), Gaps = 15/175 (8%)
Query: 57  HGDV----ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSN 112
           HGD      + + ISS RV DSG++ C A N  GS   +  + V D       + +    
Sbjct: 264 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF----INIFPMI 319
Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE----YTSSLSI 168
           + ++ V+ G+   +         P    W+          E   +S  E    Y S L +
Sbjct: 320 NTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL 379
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS 223
             L     G YT + SN+  +   + N+ VN   +   I T     +G   CVA+
Sbjct: 380 TRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN---TKPEILTYDRLVNGMLQCVAA 431

>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2 Length = 105

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+ WLKNG     +  I          SL + ++     GNYTCV  N   S NH
Sbjct: 39  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 98
Query: 193 SSNLRV 198
           + +L V
Sbjct: 99  TYHLDV 104

>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In Complex With Stem Cell Factor (Scf) Length = 489

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 68/175 (38%), Gaps = 15/175 (8%)
Query: 57  HGDV----ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSN 112
           HGD      + + ISS RV DSG++ C A N  GS   +  + V D       + +    
Sbjct: 239 HGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF----INIFPMI 294
Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE----YTSSLSI 168
           + ++ V+ G+   +         P    W+          E   +S  E    Y S L +
Sbjct: 295 NTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHL 354
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS 223
             L     G YT + SN+  +   + N+ VN   +   I T     +G   CVA+
Sbjct: 355 TRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN---TKPEILTYDRLVNGMLQCVAA 406

>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast Growth Factor Length = 104

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
           G+P  T+ WLKNG     +  I          SL + ++     GNYTCV  N   S NH
Sbjct: 38  GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 97
Query: 193 SSNLRV 198
           + +L V
Sbjct: 98  TYHLDV 103

>pdb|3IVK|H Chain H, Crystal Structure Of The Catalytic Core Of An Rna Polymerase Ribozyme Complexed With An Antigen Binding Antibody Fragment Length = 224

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 36/163 (22%)
Query: 14  LQPGPPVSLKCIATG-------------NPTPHISWKLDGYPLAGDRF----VMGQYMSL 56
           +QPG  + L C A+G              P   + W     P +G  +    V G++ ++
Sbjct: 13  VQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWVASISPYSGSTYYADSVKGRF-TI 71
Query: 57  HGDV---ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNS 113
             D     +++ ++S+R ED+ +Y C    R G +  S   R +D  GQ   V + ++++
Sbjct: 72  SADTSKNTAYLQMNSLRAEDTAVYYCA---RQGYRRRSG--RGFDYWGQGTLVTVSSAST 126
Query: 114 R---------SIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGL 146
           +         S K  SG  A + CLV    P P+T+SW    L
Sbjct: 127 KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGAL 169

>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor Length = 118

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 129 LVTKGDPPLTISWLKNGLPILSDAEITIR--SSGEYTSSLSIATLSTGH-SGNYTCVASN 185
            V +G+PP T+ WL NG P+     I +     GE +    +    T + +GNYT +A N
Sbjct: 27  FVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKN 86
Query: 186 TVASDNHSSN 195
            + + N + N
Sbjct: 87  PLGTANQTIN 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-57
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-41
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-40
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-36
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-30
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-27
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-05
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-51
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-47
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-46
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-43
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-42
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-14
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-47
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-45
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-33
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-30
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-25
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-14
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	8e-04
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-45
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-43
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-18
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	9e-45
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-15
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-44
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-42
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-35
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-32
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-30
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-27
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-21
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-17
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-43
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-40
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-33
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	6e-17
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-11
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-43
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-36
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-22
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	3e-43
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-09
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-43
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-42
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-41
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-17
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-43
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	6e-18
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-42
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	2e-12
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-42
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-36
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-09
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-42
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-08
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-42
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-34
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-32
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-42
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-14
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-42
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	9e-39
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-15
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-42
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	6e-16
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	7e-41
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-08
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	8e-41
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-24
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	9e-16
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-40
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-21
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	9e-19
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-40
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-19
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	8e-19
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-40
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	6e-13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-40
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	6e-16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-40
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-38
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-17
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	6e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-39
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-35
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-08
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-39
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-21
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-16
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-39
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-33
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-30
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-05
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-38
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-34
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-29
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-38
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	7e-19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-38
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-38
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-22
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-38
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-21
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	9e-20
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-38
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-32
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-22
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	2e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-37
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-31
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-14
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-13
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-37
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-25
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-15
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-37
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-31
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	8e-26
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-15
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-07
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-37
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-34
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-31
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-31
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-30
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-14
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-07
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-36
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-15
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-13
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-36
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	6e-17
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-13
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-35
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-16
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-34
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-12
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	9e-34
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-15
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-33
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-23
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-33
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-30
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-15
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-13
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-32
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-24
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-12
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-12
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-31
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-22
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-08
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-31
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-16
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-13
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	4e-16
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-30
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-20
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-12
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-29
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-29
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	9e-16
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-28
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-26
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-10
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-28
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-27
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	8e-25
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-27
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-07
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	2e-26
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-25
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-26
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-25
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-10
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-25
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	2e-13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	8e-09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-24
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-22
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-24
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-15
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	3e-24
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-08
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	7e-07
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-24
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-22
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-12
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	7e-07
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-24
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-20
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-13
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-23
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-13
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-23
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-08
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-22
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	6e-16
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-22
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	7e-14
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-22
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-11
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-22
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-12
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	5e-22
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-19
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-21
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	6e-10
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-07
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-21
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-16
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-21
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-17
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	5e-21
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	5e-17
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-21
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-14
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-21
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	2e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	6e-21
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-18
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	8e-18
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-14
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	8e-08
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-21
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-20
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-20
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	8e-04
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-21
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-16
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	8e-21
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-18
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-20
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-16
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-20
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-10
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	9e-06
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-20
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-18
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-20
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	7e-08
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-06
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-20
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-11
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	6e-10
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-20
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	4e-12
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-20
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	1e-09
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	6e-20
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-19
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	8e-20
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	9e-16
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	9e-20
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-09
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-06
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-19
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	7e-18
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-19
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	7e-16
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-19
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-14
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	5e-10
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-19
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	6e-16
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-19
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-15
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-19
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-16
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-19
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-13
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-19
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	9e-16
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	9e-19
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-08
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-05
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	9e-19
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	8e-16
2ens_A	96	Advanced glycosylation END product-specific recept	1e-18
2ens_A	96	Advanced glycosylation END product-specific recept	8e-14
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-18
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	8e-15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-18
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-15
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-18
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-14
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-18
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-14
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-18
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-06
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	7e-18
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	8e-13
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-17
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	5e-17
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	5e-17
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-06
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	7e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-16
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-14
1he7_A	126	High affinity nerve growth factor receptor; transf	3e-16
1he7_A	126	High affinity nerve growth factor receptor; transf	4e-14
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	7e-16
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-06
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-15
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	4e-12
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	7e-15
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-13
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	7e-15
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	9e-15
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-04
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	4e-14
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-04
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-14
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-13
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	1e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	4e-14
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-14
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	5e-12
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	7e-14
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-10
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	7e-14
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	7e-14
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	4e-08
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	1e-13
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-11
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-13
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	4e-12
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-13
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	9e-11
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-13
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	3e-12
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-13
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-09
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	5e-13
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	9e-12
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	8e-13
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-10
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-12
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-10
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-12
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-12
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	1e-11
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-12
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	1e-09
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-12
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-12
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	5e-06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	9e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	8e-12
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	1e-08
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	8e-12
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	8e-12
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	1e-11
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-11
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-11
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-11
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	3e-10
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-11
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	2e-07
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-11
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-10
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-11
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-11
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	5e-10
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	3e-11
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	8e-11
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-10
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	8e-11
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	8e-11
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-10
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-08
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	7e-10
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	8e-04
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	9e-10
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	2e-09
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	3e-09
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	4e-09
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	1e-07
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	3e-08
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	5e-07
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-08
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	4e-08
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-04
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	4e-08
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	9e-08
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	1e-07
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	2e-07
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	7e-06
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	3e-04
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	2e-07
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	3e-07
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	2e-07
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	4e-07
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	5e-07
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	6e-07
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	7e-06
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	1e-06
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	3e-06
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	1e-04
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	4e-06
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	2e-04
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	5e-06
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	8e-06
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	9e-06
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	1e-05
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	1e-05
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	2e-05
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	2e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	3e-05
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	3e-05
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	7e-05
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	7e-05
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	1e-04
3tjh_C	226	42F3 alpha; IG MHC, antigen recognition, TCR-PMHC,	1e-04
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	4e-04
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	4e-04
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	4e-04
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	6e-04
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	6e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	7e-04
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	9e-04
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	9e-04

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  195 bits (497), Expect = 3e-57
 Identities = 88/287 (30%), Positives = 131/287 (45%), Gaps = 55/287 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
           P +   F ++T++PGP V LKC+A GNPTP ISW+LDG  +   DR+ +GQY++++GDV+
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV 489

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           S++NI+SV   D G+Y+C A ++VG   HSA + VY  P                 + +G
Sbjct: 490 SYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP--------YIRQMEKKAIVAG 541

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
           +   V C V  G P  +I W ++   +  + +  +  +G    +L I  +          
Sbjct: 542 ETLIVTCPVA-GYPIDSIVWERDNRALPINRKQKVFPNG----TLIIENVERNS------ 590

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVNVP 240
                                               YTCVA N    S   S  ++V V 
Sbjct: 591 --------------------------------DQATYTCVAKNQEGYSARGSLEVQVMVL 618

Query: 241 PHIGPFTFGE--LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
           P I PF F E     G    + C V  GDLPL++ W  +G AIS+  
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDL 665

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  151 bits (383), Expect = 2e-41
 Identities = 52/217 (23%), Positives = 79/217 (36%), Gaps = 18/217 (8%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSVR 70
           + +  G  + + C   G P   I W+ D   L    +  +    +L    I +V     R
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLI---IENVE----R 588

Query: 71  VEDSGIYQCTATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
             D   Y C A N+ G S   S +++V   P      +++           G    + C 
Sbjct: 589 NSDQATYTCVAKNQEGYSARGSLEVQVMVLP------RIIPFAFEEGPAQVGQYLTLHCS 642

Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
           V  GD PL I W  +G  I  D  IT    G   S L+I  +   H+GN+TC A N    
Sbjct: 643 VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGH 702

Query: 190 DNHSSNLRVNE---YTSSLSIATLSTGHSGNYTCVAS 223
              ++ L V     +    +    + G      C A 
Sbjct: 703 QQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKAD 739

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  148 bits (374), Expect = 3e-40
 Identities = 59/280 (21%), Positives = 95/280 (33%), Gaps = 55/280 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
                    QT+  G P    C  TGNP   +SW  DG  +                  S
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--------------S 389

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            + I SV+ ED G+YQC   N   S   SA++++      P     +    +   +  G 
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPV----IRQAFQEETMEPGP 445

Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
              ++C+   G+P   ISW  +G  I ++    +                          
Sbjct: 446 SVFLKCVAG-GNPTPEISWELDGKKIANNDRYQVGQYV---------------------- 482

Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
                            +  S L+I ++     G Y C+A + V    HS+ L V   P+
Sbjct: 483 -------------TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPY 529

Query: 243 IGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
           I       ++ G    V C V +G    S+ W ++  A+ 
Sbjct: 530 IRQMEKKAIVAGETLIVTCPV-AGYPIDSIVWERDNRALP 568

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  135 bits (342), Expect = 4e-36
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 14/195 (7%)

Query: 7   YKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN 65
           + F +   Q G  ++L C   G   P +I W LDG  ++ D  +    +   G   S + 
Sbjct: 624 FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG---SVLT 680

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
           I +V    +G + C A N  G Q  +  + VY  P                    G  A 
Sbjct: 681 IEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP-------RWILEPTDKAFAQGSDAK 733

Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG--EYTSSLSIATLSTGHSGNYTCVA 183
           V+C    G P   ++W K       + +   +S        +L +  +   + G Y C A
Sbjct: 734 VECKAD-GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEA 792

Query: 184 SNTVASDNHSSNLRV 198
            N + S   +  +  
Sbjct: 793 INGIGSGLSAVIMIS 807

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  117 bits (295), Expect = 7e-30
 Identities = 50/295 (16%), Positives = 87/295 (29%), Gaps = 63/295 (21%)

Query: 12  QTLQPGPPVSLKCIA---TGNPTPHISWKLDGYPLA------GDRFVMGQYMSLHGDVIS 62
           + +  G    +KC+      +    +SW  D             ++++     LH     
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH----- 202

Query: 63  HVNISSVRVEDS-GIYQCTATNRVGSQT---HSADMRVYDAPGQPQDVKLVTSNSRSIK- 117
              I  V  ED    YQC   +R+  +T    +    V   P      K+V+     +K 
Sbjct: 203 ---IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKT 259

Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
                   + C    G P     W K          + +                     
Sbjct: 260 YSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQAVVL--------------------- 297

Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237
                            N RV + + +L I       SG Y CV +N+V  ++  + L V
Sbjct: 298 -----------------NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340

Query: 238 NVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
             P           +  G      C   +G+   ++ W K+G AI   +  + + 
Sbjct: 341 TAPLSAKIDPPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGHSESVLRIE 394

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  110 bits (277), Expect = 2e-27
 Identities = 47/286 (16%), Positives = 80/286 (27%), Gaps = 51/286 (17%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGD--VISHVNIS 67
           +          ++C A+GNP P I W + DG  +       G          V       
Sbjct: 48  RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP---GLRQISSDGKLVFPPFRAE 104

Query: 68  SVRVE-DSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
             R E  + +Y C A N+ GS  +    +R   A           ++     V  G+ A 
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQ-------YYEADVNKEHVIRGNSAV 157

Query: 126 VQCLVTK--GDPPLTISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLSTGHS-GNYTC 181
           ++CL+     D    +SW  +        AE   +     +  L I  +       +Y C
Sbjct: 158 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 217

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
              + +  +                                S T      +  +   VP 
Sbjct: 218 RTKHRLTGET-----------------------------RLSATKGRLVITEPISSAVPK 248

Query: 242 HI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
            +    F            + C  Q G      +WYK     ++  
Sbjct: 249 VVSLAKFDMKTYSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQ 293

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 85.8 bits (212), Expect = 6e-19
 Identities = 32/232 (13%), Positives = 66/232 (28%), Gaps = 54/232 (23%)

Query: 65  NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG-----QPQDVKLVTSNSRSIKVH 119
           N+ + R++   ++   A    GSQT +A+    D  G     +P +          I   
Sbjct: 2   NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNR---------IDFS 52

Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS----TGH 175
           +   A ++C  + G+P   I W+++    + D     + S +                 H
Sbjct: 53  NSTGAEIECKAS-GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH 111

Query: 176 SGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 235
           +  Y C+A N   S                    +    +  Y    +       +S+ +
Sbjct: 112 AQVYACLARNQFGSIISRD-------------VHVRAVVAQYYEADVNKEHVIRGNSAVI 158

Query: 236 RVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDIS 287
           +  +P                          D    + W+ +      P   
Sbjct: 159 KCLIPSF----------------------VADFVEVVSWHTDEEENYFPGAE 188

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 75.4 bits (185), Expect = 2e-15
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P+ I +   +    G    ++C A G P P ++WK       G+   + +  ++  +   
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE-G 773

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
            +++ +++  + G Y C A N +GS   +  M    A     
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHHH 815

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 5/78 (6%)

Query: 205 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV--PPHI--GPFTFGELMEGVRTQVA 260
           +++          +  VA     S   ++N        P     P    +       ++ 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 261 CVVQSGDLPLSLQWYKNG 278
           C   SG+    + W ++ 
Sbjct: 61  CKA-SGNPMPEIIWIRSD 77

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  174 bits (444), Expect = 8e-51
 Identities = 56/281 (19%), Positives = 95/281 (33%), Gaps = 53/281 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P    K +   L  G   + KC  TG     I+W  D   +       G Y     +  +
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG----GNYKMTLVENTA 253

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            + +  V   D+G Y C A+N  G  + SA + V + P      + +     S  V   +
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP------RFIKKLEPSRIVKQDE 307

Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
               +C +  G P + + W K+   I   ++  +                          
Sbjct: 308 HTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVES--------------------- 345

Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
                               + L +  LS   SG+YTC A N   S + S++L+V  PP 
Sbjct: 346 -------------------VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV 386

Query: 243 I-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
                   E ++G    + C +  G  P  + W+K+   + 
Sbjct: 387 FRKKPHPVETLKGADVHLECEL-QGTPPFQVSWHKDKRELR 426

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  164 bits (416), Expect = 8e-47
 Identities = 56/284 (19%), Positives = 96/284 (33%), Gaps = 54/284 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
           P    K        G PV+ +C   G+    +SW  DG  L                  +
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFI-----HNV 156

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           + + I        G Y C+A+N +G+ + SA + + +    P           S+ +  G
Sbjct: 157 ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF----FDLKPVSVDLALG 212

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
           +    +C VT G  P+ I+W K+   I       +                         
Sbjct: 213 ESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVE--------------------- 250

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
                               T++L++  ++ G +G YTC ASN    D+ S+ L V  PP
Sbjct: 251 -------------------NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 291

Query: 242 HI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
                      + +   T+  C +  G   + + WYK+   I +
Sbjct: 292 RFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQE 334

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  163 bits (415), Expect = 1e-46
 Identities = 52/282 (18%), Positives = 99/282 (35%), Gaps = 54/282 (19%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
            + ++       +C   G+P   + W  D   +         ++     +     + ++ 
Sbjct: 300 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE----MYNLS 355

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
           VEDSG Y C A N  GS + S  ++V + P       +       ++   G    ++C +
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLKVKEPP-------VFRKKPHPVETLKGADVHLECEL 408

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
             G PP  +SW K+   + S  +  I S                                
Sbjct: 409 Q-GTPPFQVSWHKDKRELRSGKKYKIMSEN------------------------------ 437

Query: 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI-GPFTFG 249
                     + +S+ I  + +   G Y C ASN V SD    ++ +  PP      +  
Sbjct: 438 ----------FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDI 487

Query: 250 ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
             + G   Q+   +  G  P+S+ W+K+   I +   +I ++
Sbjct: 488 STVVGEEVQLQATI-EGAEPISVAWFKDKGEIVRESDNIWIS 528

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  154 bits (391), Expect = 3e-43
 Identities = 60/281 (21%), Positives = 96/281 (34%), Gaps = 48/281 (17%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P  I          G P++L+C   G P   I+W  +   L        Q+ +    ++ 
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV- 64

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
              I+ V   D G Y C A N VG+   SA + + +    P          + +    G 
Sbjct: 65  ---INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPS----FARKLKDVHETLGF 117

Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
               +C +  G  PL +SW K+G  +  DA +         ++L I      H G Y C 
Sbjct: 118 PVAFECRIN-GSEPLQVSWYKDGELLKDDANLQTSFIHN-VATLQILQTDQSHVGQYNCS 175

Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
           ASN + + + S+ L ++E+                                     VPP 
Sbjct: 176 ASNPLGTASSSAKLTLSEH------------------------------------EVPPF 199

Query: 243 I-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
                   +L  G      C V +G  P+ + W K+   I 
Sbjct: 200 FDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIR 239

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  153 bits (387), Expect = 1e-42
 Identities = 48/202 (23%), Positives = 78/202 (38%), Gaps = 20/202 (9%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHG 58
           P    K        G  V L+C   G P   +SW  D   L +G ++ +       S+H 
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH- 443

Query: 59  DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
                  I +V   D G YQC A+N VGS T    + +   P               I  
Sbjct: 444 -------ILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPP-------RFVKKLSDIST 489

Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
             G+   +Q  +  G  P++++W K+   I+ +++    S  E  ++L  +     ++G 
Sbjct: 490 VVGEEVQLQATIE-GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGK 548

Query: 179 YTCVASNTVASDNHSSNLRVNE 200
           YTC   N   +    + L V E
Sbjct: 549 YTCQIKNEAGTQECFATLSVLE 570

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 78.7 bits (194), Expect = 1e-16
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           + P+ + K    +   G  V L+    G     ++W  D   +  +          + + 
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES---DNIWISYSEN 532

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD 98
           I+ +  S     ++G Y C   N  G+Q   A + V +
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 70.6 bits (173), Expect = 6e-14
 Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 51/184 (27%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
             ++   G+   +QC V  G P + I+W K    + S     ++                
Sbjct: 13  EHVEAAIGEPITLQCKVD-GTPEIRIAWYKEHTKLRSAPAYKMQFKNN------------ 59

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
                                        +SL I  +     G YTC A N+V +   S+
Sbjct: 60  ----------------------------VASLVINKVDHSDVGEYTCKAENSVGAVASSA 91

Query: 234 NLRVNVPPHIGPFTFGELMEGVRTQV------ACVVQSGDLPLSLQWYKNGLAISQ-PDI 286
            L +       P +F   ++ V   +       C + +G  PL + WYK+G  +    ++
Sbjct: 92  VLVIKERKL--PPSFARKLKDVHETLGFPVAFECRI-NGSEPLQVSWYKDGELLKDDANL 148

Query: 287 SITL 290
             + 
Sbjct: 149 QTSF 152

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  156 bits (395), Expect = 2e-47
 Identities = 40/199 (20%), Positives = 68/199 (34%), Gaps = 11/199 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
           P +  +    T + G    L C   G P P I W   G  L    ++ M           
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKM-----SSDGRT 62

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
             + + +   ED G+Y C ATN VG    S+ + +   P       L            G
Sbjct: 63  HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPL----KEKYYGAVG 118

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
               +  +   G P   ++W      + +   ITI ++  YT  +        H+G Y  
Sbjct: 119 STLRLHVMYI-GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV 177

Query: 182 VASNTVASDNHSSNLRVNE 200
             SN   + +   ++ + +
Sbjct: 178 QLSNVFGTVDAILDVEIQD 196

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 30/181 (16%), Positives = 56/181 (30%), Gaps = 47/181 (25%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           + +    G+ A + C +  G P   I W + G  ++   +  + S G  T +L++     
Sbjct: 15  KDVTTKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSDGR-THTLTV----- 67

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
                           D                         G YTC+A+N V     SS
Sbjct: 68  ----------MTEEQED------------------------EGVYTCIATNEVGEVETSS 93

Query: 234 NLRVNVPPHIGPFTFGE----LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDISI 288
            L +   P   P    +       G   ++  +   G    ++ W+     +    +I+I
Sbjct: 94  KLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY-IGRPVPAMTWFHGQKLLQNSENITI 152

Query: 289 T 289
            
Sbjct: 153 E 153

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  160 bits (405), Expect = 1e-45
 Identities = 49/289 (16%), Positives = 91/289 (31%), Gaps = 47/289 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRFVMGQYMSLHGDV 60
           P +        L+ G   ++ C      +  + +WK +       +++    +   + + 
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYER 271

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
            + + ISS RV DSG++ C A N  GS   +  + V D       + +    + ++ V+ 
Sbjct: 272 QATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF----INIFPMINTTVFVND 327

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
           G+   +         P    W+          E   +S  E                   
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNI---------------- 371

Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
                               Y S L +  L     G YT + SN+  +   + N+ VN  
Sbjct: 372 -------------------RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK 412

Query: 241 PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
           P I           V   + CV  +G    ++ WY       +   S+ 
Sbjct: 413 PEI-----LTYDRLVNGMLQCVA-AGFPEPTIDWYFCPGTEQRCSASVL 455

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  126 bits (317), Expect = 4e-33
 Identities = 43/285 (15%), Positives = 81/285 (28%), Gaps = 48/285 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWK-LDGYPLAGDRFVMGQYMSLHGDVI 61
            +L         +      ++C  T     + S K   G PL  D   +       G +I
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFI--PDPKAGIMI 172

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
             V  +           C+      S   S    +   P   + V +V+ +  S  +  G
Sbjct: 173 KSVKRA----YHRLCLHCSVDQEGKSV-LSEKFILKVRPA-FKAVPVVSVSKASYLLREG 226

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
           +   V C +      +  +W +         +      G++                   
Sbjct: 227 EEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFN------------------ 268

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
                             E  ++L+I++     SG + C A+NT  S N ++ L V    
Sbjct: 269 -----------------YERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG 311

Query: 242 HIGPFTFG----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
            I  F        + +G    +    ++   P   QW       +
Sbjct: 312 FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFT 356

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  117 bits (295), Expect = 4e-30
 Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 27/202 (13%)

Query: 12  QTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHV-NISSV 69
             +  G  V L       P P H  W               +  +          +++ +
Sbjct: 323 VFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRL 382

Query: 70  RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
           +  + G Y    +N   +   + ++ V   P               +         +QC+
Sbjct: 383 KGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP-------------EILTYDRLVNGMLQCV 429

Query: 130 VTKGDPPLTISWLKNGLPILSDAE-----------ITIRSSGEYTSSLSIATLSTGHSGN 178
              G P  TI W          +             +    G+     SI + +  H+G 
Sbjct: 430 AA-GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGT 488

Query: 179 YTCVASNTVASDNHSSNLRVNE 200
             C A N V   +   N     
Sbjct: 489 VECKAYNDVGKTSAYFNFAFKG 510

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  103 bits (259), Expect = 3e-25
 Identities = 36/291 (12%), Positives = 70/291 (24%), Gaps = 70/291 (24%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P +        ++ G  + L C   G     + W  +      +            +  +
Sbjct: 37  PSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNE------------NKQN 80

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
                     ++G Y CT  + + +  +   + V D          +    RS+     +
Sbjct: 81  EWITEKAEATNTGKYTCTNKHGLSNSIY---VFVRDPA-------KLFLVDRSLYGKEDN 130

Query: 123 RAGVQCLVTKGDPPLTISWLK--NGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNY 179
              V+C +T  DP +T   LK   G P+  D              + I ++    H    
Sbjct: 131 DTLVRCPLT--DPEVTNYSLKGCQGKPLPKDLRFIPDPKA----GIMIKSVKRAYHRLCL 184

Query: 180 TCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
            C           S    +                                         
Sbjct: 185 HCSVDQEG-KSVLSEKFILKVRP---------------------------------AFKA 210

Query: 240 PPHIGPFTFG-ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
            P +        L EG    V C ++     +   W +        +   +
Sbjct: 211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS 261

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 72.8 bits (178), Expect = 1e-14
 Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 11/104 (10%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYP--------LAGDRFVMGQYMSLHGDVISHV 64
           T        L+C+A G P P I W              L  D   +       G ++   
Sbjct: 417 TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQS 476

Query: 65  NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG---QPQD 105
           +I S   + +G  +C A N VG  +   +            P  
Sbjct: 477 SIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHH 520

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 15/156 (9%), Positives = 34/156 (21%), Gaps = 50/156 (32%)

Query: 175 HSGNYTCV----ASNTVASDNHSSNLRVNE------------------------------ 200
            + ++ CV          S   S +                                   
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVK 65

Query: 201 ------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIG-PFT 247
                         +          ++G YTC   + +++  +   + V  P  +     
Sbjct: 66  WTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIY---VFVRDPAKLFLVDR 122

Query: 248 FGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
                E   T V C +   ++         G  + +
Sbjct: 123 SLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPK 158

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 39.6 bits (92), Expect = 8e-04
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 10/83 (12%)

Query: 214 HSGNYTCV----ASNTVASDNHSSNLRVNVPPHIGP-FTFGELMEGVRTQVACVVQSGDL 268
            + ++ CV          S   S +     PP I P  +   +  G   ++ C       
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG--- 62

Query: 269 PLSLQWYKNGLAISQPDISITLT 291
              ++W    L  +  +      
Sbjct: 63  --FVKWTFEILDETNENKQNEWI 83

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  154 bits (391), Expect = 1e-45
 Identities = 57/289 (19%), Positives = 96/289 (33%), Gaps = 54/289 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P    K +   L  G   + KC  TG     I+W  D   +       G Y     +  +
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG----GNYKMTLVENTA 61

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            + +  V   D+G Y C A+N  G  + SA + V + P      + +     S  V   +
Sbjct: 62  TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP------RFIKKLEPSRIVKQDE 115

Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
               +C +  G P + + W K+   I   ++  +                          
Sbjct: 116 HTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVES--------------------- 153

Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
                               + L +  LS   SG+YTC A N   S + S++L+V  PP 
Sbjct: 154 -------------------VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV 194

Query: 243 I-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDISIT 289
                   E ++G    + C +  G  P  + W+K+   +       I 
Sbjct: 195 FRKKPHPVETLKGADVHLECEL-QGTPPFQVSWHKDKRELRSGKKYKIM 242

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  148 bits (376), Expect = 2e-43
 Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 15/189 (7%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSV 69
            + ++       +C   G+P   + W  D   +    +F M    S+       + + ++
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV-----LEMYNL 162

Query: 70  RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
            VEDSG Y C A N  GS + S  ++V + P       +       ++   G    ++C 
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVKEPP-------VFRKKPHPVETLKGADVHLECE 215

Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
           +  G PP  +SW K+   + S  +  I S     +S+ I  + +   G Y C ASN V S
Sbjct: 216 LQ-GTPPFQVSWHKDKRELRSGKKYKIMSENF-LTSIHILNVDSADIGEYQCKASNDVGS 273

Query: 190 DNHSSNLRV 198
                ++ +
Sbjct: 274 YTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 81.3 bits (201), Expect = 4e-18
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 12/98 (12%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHG 58
           P    K        G  V L+C   G P   +SW  D   L +G ++ +       S+H 
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH- 251

Query: 59  DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
                  I +V   D G YQC A+N VGS T    + +
Sbjct: 252 -------ILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  149 bits (378), Expect = 9e-45
 Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 8/196 (4%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P          +  G   + +   +G P P +SW  DG  ++       Q     G   +
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR--A 63

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            + I +V   +SG Y   ATN  G  T +A++ V      P          +S+ V  G 
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPN----FVQRLQSMTVRQGS 119

Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
           +  +Q  VT G P   + + ++G  I S  +  I   G+   SL IA      SG Y+  
Sbjct: 120 QVRLQVRVT-GIPTPVVKFYRDGAEIQSSLDFQISQEGD-LYSLLIAEAYPEDSGTYSVN 177

Query: 183 ASNTVASDNHSSNLRV 198
           A+N+V     ++ L V
Sbjct: 178 ATNSVGRATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 72.1 bits (177), Expect = 2e-15
 Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 41/179 (22%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY-TSSLSIATLS 172
           +S+ V  G  A  +  ++ G P   +SW ++G  I +     ++ S     + L+I  ++
Sbjct: 13  QSVVVLEGSTATFEAHIS-GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVT 71

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
             +SG Y+  A+N       ++ L V                                  
Sbjct: 72  KANSGRYSLKATNGSGQATSTAELLVKA-------------------------------- 99

Query: 233 SNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDISIT 289
                  PP+         + +G + ++   V +G     +++Y++G  I    D  I+
Sbjct: 100 ----ETAPPNFVQRLQSMTVRQGSQVRLQVRV-TGIPTPVVKFYRDGAEIQSSLDFQIS 153

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  158 bits (401), Expect = 4e-44
 Identities = 58/299 (19%), Positives = 102/299 (34%), Gaps = 58/299 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD------RFVMGQYMSL 56
             ++       L  G  + L C A       I +  +             R +  Q  S 
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 284

Query: 57  HGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
               +S + I  V   D G+Y C A++ + ++ +S  +RV++ P     V   +     +
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP----FVAFGSGMESLV 340

Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
           +   G+R  +      G PP  I W KNG+P+ S+  I      +    L+I  +S   +
Sbjct: 341 EATVGERVRIPAKYL-GYPPPEIKWYKNGIPLESNHTI------KAGHVLTIMEVSERDT 393

Query: 177 GNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR 236
           GNYT + +N ++ +  S  +                                     +L 
Sbjct: 394 GNYTVILTNPISKEKQSHVV-------------------------------------SLV 416

Query: 237 VNVPPHIGPFTFGE----LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
           V VPP IG  +          G    + C V +   P  + WY         + S  ++
Sbjct: 417 VYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVS 475

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  154 bits (390), Expect = 1e-42
 Identities = 49/280 (17%), Positives = 79/280 (28%), Gaps = 19/280 (6%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
                G  V +     G P P I W  +G PL  +  +   +  L         I  V  
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH-VLT--------IMEVSE 390

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
            D+G Y    TN +  +  S  + +      P  +   +  S       G    + C V 
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLVVYV--PPQIGEKSLISPVDSYQYGTTQTLTCTVY 448

Query: 132 KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191
              PP  I W        ++      S           ++     GN        +  + 
Sbjct: 449 AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGN-------KIEVNK 501

Query: 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGEL 251
           +   L   +  +  ++   +   S  Y C A N V       +  V   P I      + 
Sbjct: 502 NQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQP 561

Query: 252 MEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
            E     + C         +L WYK G       +    T
Sbjct: 562 TEQESVSLWCTA-DRSTFENLTWYKLGPQPLPIHVGELPT 600

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  132 bits (333), Expect = 6e-35
 Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 23/214 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDR--------------- 47
              I             VSL C A  +   +++W   G                      
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609

Query: 48  -FVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDV 106
             +     S   + I  + + +  ++D G Y C A +R   + H    ++          
Sbjct: 610 WKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA--- 666

Query: 107 KLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSL 166
             +T N  +     G+   V C  + G+PP  I W K+   ++ D+ I ++       +L
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLKDG---NRNL 722

Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
           +I  +     G YTC A + +      +   +  
Sbjct: 723 TIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  126 bits (316), Expect = 1e-32
 Identities = 44/308 (14%), Positives = 81/308 (26%), Gaps = 65/308 (21%)

Query: 11  QQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVM------------------- 50
             + Q G   +L C     P P HI W         +                       
Sbjct: 432 VDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDF 491

Query: 51  ----------GQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
                      Q+  + G   +   +       S +Y+C A N+VG         V   P
Sbjct: 492 QGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGP 551

Query: 101 GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160
                     +    ++    +   + C          ++W K G   L      + +  
Sbjct: 552 --------EITLQPDMQPTEQESVSLWCTAD-RSTFENLTWYKLGPQPLPIHVGELPTPV 602

Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC 220
                      +T  S +                          + +   S    G+Y C
Sbjct: 603 CKNLDTLWKLNATMFSNST--------------------NDILIMELKNASLQDQGDYVC 642

Query: 221 VASNTVASDNHSSNLRVNVPPHIGP-FTFG----ELMEGVRTQVACVVQSGDLPLSLQWY 275
           +A +      H    ++ V   + P  T          G   +V+C   SG+ P  + W+
Sbjct: 643 LAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTA-SGNPPPQIMWF 701

Query: 276 KNGLAISQ 283
           K+   + +
Sbjct: 702 KDNETLVE 709

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  118 bits (297), Expect = 4e-30
 Identities = 44/286 (15%), Positives = 90/286 (31%), Gaps = 48/286 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
               +  +  T      V + C+ + +     +  +        D    G  +S      
Sbjct: 129 VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPD----GNRISWDSK-- 182

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
               I S  +  +G+  C A     S      + V           +V S S  I++  G
Sbjct: 183 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY---DVVLSPSHGIELSVG 239

Query: 122 DRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
           ++  + C    + +  +  +W            +                          
Sbjct: 240 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK--------------------- 278

Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
                        S   + ++ S+L+I  ++    G YTC AS+ + +  +S+ +RV+  
Sbjct: 279 -----------TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 327

Query: 241 PHIGPFTFG----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
           P +   +      E   G R ++      G  P  ++WYKNG+ + 
Sbjct: 328 PFVAFGSGMESLVEATVGERVRIPAKY-LGYPPPEIKWYKNGIPLE 372

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  109 bits (273), Expect = 6e-27
 Identities = 33/229 (14%), Positives = 61/229 (26%), Gaps = 19/229 (8%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P+L  +    T++    + + C   G       W  +         V        G    
Sbjct: 32  PRLSIQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVT---ECSDGLFCK 86

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            + I  V   D+G Y+C       +      ++ Y +P               I  +   
Sbjct: 87  TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSD--QHGVVYITENKNK 144

Query: 123 RAGVQCLVTKGDPPLTIS-WLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
              + CL +  +  +++         +     I+  S        +I +    ++G   C
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK----GFTIPSYMISYAGMVFC 200

Query: 182 VASNTVASDNHSSNLRVNEY-------TSSLSIATLSTGHSGNYTCVAS 223
            A     S      + V           S      LS G      C A 
Sbjct: 201 EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 249

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 92.1 bits (228), Expect = 5e-21
 Identities = 25/226 (11%), Positives = 57/226 (25%), Gaps = 46/226 (20%)

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
           + S  +    ++ C  T        S  + +      P+    ++     + + +     
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLDL------PR----LSIQKDILTIKANTTLQ 50

Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
           + C   +G   L   W  N        E+T  S G +  +L+I  +    +G Y C    
Sbjct: 51  ITC---RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRE 107

Query: 186 TVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGP 245
           T  +      ++                                    +  +        
Sbjct: 108 TDLASVIYVYVQDYR---------------------------------SPFIASVSDQHG 134

Query: 246 FTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
             +    +     + C+    +L +SL               I+  
Sbjct: 135 VVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD 180

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 81.7 bits (201), Expect = 1e-17
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P +      QT   G  + + C A+GNP P I W  D   L  D       +   G+   
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED----SGIVLKDGN--R 720

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
           ++ I  VR ED G+Y C A + +G     A   +  A  +  
Sbjct: 721 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 762

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  152 bits (385), Expect = 1e-43
 Identities = 44/283 (15%), Positives = 86/283 (30%), Gaps = 39/283 (13%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
              + P   + ++C A GNP P   W  +       +          G ++         
Sbjct: 26  DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRP 85

Query: 71  VEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
            E  G YQC A N+ G+  ++   ++V  +P           N   + V  G    +QC 
Sbjct: 86  EEYEGEYQCFARNKFGTALSNRIRLQVSKSP------LWPKENLDPVVVQEGAPLTLQCN 139

Query: 130 VTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLSTG-HSGNYTCVASNTV 187
              G P   I W+ + +  ++  + ++   +G     L  + +       +Y+C A    
Sbjct: 140 PPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG----DLYFSNVMLQDMQTDYSCNARFHF 195

Query: 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFT 247
                  N                           +  V +    +    +     G  +
Sbjct: 196 THTIQQKN-------------------------PFTLKVLTTRGVAERTPSFMYPQGTAS 230

Query: 248 FGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITL 290
              ++ G+   + C+  SG     + WYK G  +         
Sbjct: 231 SQMVLRGMDLLLECIA-SGVPTPDIAWYKKGGDLPSDKAKFEN 272

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  144 bits (365), Expect = 1e-40
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 23/192 (11%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           Q +  G  + L+CIA+G PTP I+W   G  L  D+     +          + I++V  
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENF-------NKALRITNVSE 284

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAP---GQPQDVKLVTSNSRSIKVHSGDRAGVQC 128
           EDSG Y C A+N++GS  H+  +RV  AP    +P+++           +  G+   + C
Sbjct: 285 EDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNL----------ILAPGEDGRLVC 334

Query: 129 LVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188
               G+P  T+ W+ NG P+ S      R       ++            Y C  SN   
Sbjct: 335 RAN-GNPKPTVQWMVNGEPLQSAPPNPNREVAG--DTIIFRDTQISSRAVYQCNTSNEHG 391

Query: 189 SDNHSSNLRVNE 200
               ++ + V +
Sbjct: 392 YLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  125 bits (315), Expect = 2e-33
 Identities = 58/292 (19%), Positives = 97/292 (33%), Gaps = 69/292 (23%)

Query: 8   KFIQQTLQP-----GPPVSLKCIAT-GNPTPHISWKLDGYPL--AGDRFVMGQYMSLHGD 59
            + ++ L P     G P++L+C    G P+P I W            R   G    L+  
Sbjct: 117 LWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY-- 174

Query: 60  VISHVNISSVRVEDS-GIYQCTATNRVG---SQTHSADMRVYDAPGQPQD---VKLVTSN 112
                  S+V ++D    Y C A         Q +   ++V    G  +           
Sbjct: 175 ------FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGT 228

Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS 172
           + S  V  G    ++C+ + G P   I+W K G  + SD                     
Sbjct: 229 ASSQMVLRGMDLLLECIAS-GVPTPDIAWYKKGGDLPSD--------------------- 266

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
                                   +   +  +L I  +S   SG Y C+ASN + S  H+
Sbjct: 267 ----------------------KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT 304

Query: 233 SNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
            ++RV   P+         L  G   ++ C   +G+   ++QW  NG  +  
Sbjct: 305 ISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA-NGNPKPTVQWMVNGEPLQS 355

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 79.1 bits (195), Expect = 6e-17
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 5/96 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P  + +     L PG    L C A GNP P + W ++G PL            + GD I 
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPP--NPNREVAGDTII 370

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD 98
                  ++    +YQC  +N  G    +A + V D
Sbjct: 371 ---FRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 27/184 (14%), Positives = 49/184 (26%), Gaps = 44/184 (23%)

Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS 172
           ++   V   D   ++C    G+P  +  W +N        +  +      + +L I   S
Sbjct: 24  AKDHIVDPRDNILIECEAK-GNPAPSFHWTRNSRFFNIAKDPRVSMR-RRSGTLVIDFRS 81

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN---TVASD 229
            G                                       + G Y C A N   T  S 
Sbjct: 82  GGRPEE-----------------------------------YEGEYQCFARNKFGTALS- 105

Query: 230 NHSSNLRVNVPPHIGPFTFG--ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDIS 287
            +   L+V+  P           + EG    + C    G     + W  + +     D  
Sbjct: 106 -NRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKR 164

Query: 288 ITLT 291
           ++  
Sbjct: 165 VSQG 168

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  149 bits (377), Expect = 3e-43
 Identities = 63/283 (22%), Positives = 98/283 (34%), Gaps = 43/283 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P+ I +   Q    G   S  C ATG+P P ++W   G  +   RF   ++    G V+ 
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL- 65

Query: 63  HVNISSVRV-EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
              I  +R   D  +Y+C A N VG  T  A + V      P     +    +   V   
Sbjct: 66  --RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
             A + C  + G+P   I+W K+ LP+   A    R     + +L I +      G Y C
Sbjct: 124 RTATMLCAAS-GNPDPEITWFKDFLPVDPSASNG-RIKQLRSGALQIESSEETDQGKYEC 181

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
           VA+N+                               Y+  A+  V           NV P
Sbjct: 182 VATNS---------------------------AGVRYSSPANLYV--------RVQNVAP 206

Query: 242 HI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
                    E+M G    + CV   G     ++W +    ++ 
Sbjct: 207 RFSILPMSHEIMPGGNVNITCVA-VGSPMPYVKWMQGAEDLTP 248

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  131 bits (330), Expect = 2e-36
 Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 17/190 (8%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           + ++     ++ C A+GNP P I+W  D  P+       G+   L    +    I S   
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSA-SNGRIKQLRSGALQ---IESSEE 173

Query: 72  EDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
            D G Y+C ATN  G   +  A++ V      P+     +    S ++  G    + C+ 
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR----FSILPMSHEIMPGGNVNITCVA 229

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
             G P   + W++    +  + ++ +           +       S NYTCVA +++   
Sbjct: 230 V-GSPMPYVKWMQGAEDLTPEDDMPV-------GRNVLELTDVKDSANYTCVAMSSLGVI 281

Query: 191 NHSSNLRVNE 200
              + + V  
Sbjct: 282 EAVAQITVKS 291

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 94.1 bits (234), Expect = 1e-22
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 12/104 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
           P+     +   + PG  V++ C+A G+P P++ W      L   D   +G+         
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRN-------- 257

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQD 105
               +    V+DS  Y C A + +G     A + V   P     
Sbjct: 258 ---VLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTK 298

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  146 bits (369), Expect = 3e-43
 Identities = 54/207 (26%), Positives = 77/207 (37%), Gaps = 23/207 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGD--- 59
           P+++       +  G P +L C A G PTP I W   G  +  D+     +  L      
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVG-SQTHSADMRVYDAP----GQPQDVKLVTSNSR 114
               +        D G+Y C A N +G + +H A + V          P DV        
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV-------- 121

Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
              V  G+ A ++C   +G P  TISW K+G P+    E      G     L I      
Sbjct: 122 --MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG----KLMITYTRKS 175

Query: 175 HSGNYTCVASNTVASDN-HSSNLRVNE 200
            +G Y CV +N V       + L V E
Sbjct: 176 DAGKYVCVGTNMVGERESEVAELTVLE 202

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 37/180 (20%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
             + V  G+ A + C    G P  TI W K G  + +D                      
Sbjct: 17  SDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETD--------------------KD 55

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHS 232
               +   + S ++             +   +     S    G Y CVA N +  + +H 
Sbjct: 56  DPRSHRMLLPSGSL-------------FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102

Query: 233 SNLRVNV-PPHIG-PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITL 290
           ++L V +         +   +  G    + C    G    ++ W K+G  +   D  IT+
Sbjct: 103 ASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI 162

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  150 bits (381), Expect = 5e-43
 Identities = 68/294 (23%), Positives = 97/294 (32%), Gaps = 60/294 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
              + +        G  V L C A  +   P I WK DG  LA       Q +     +I
Sbjct: 22  LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLI 81

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
            ++  S     D G+YQC A+        S   +V  A G  +      S + SI    G
Sbjct: 82  QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA-GPLR----FLSQTESITAFMG 136

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPI---LSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
           D   ++C V  GDP  TI W KN   +     D+ + +  SG    +L I+ L  G SG 
Sbjct: 137 DTVLLKCEVI-GDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG----ALQISRLQPGDSGV 191

Query: 179 YTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238
           Y C A N  ++                                  N          +R+ 
Sbjct: 192 YRCSARNPASTR-------------------------------TGNEA-------EVRIL 213

Query: 239 VPPHI-GPFTFGE------LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
             P +     F +       +EG    + C V SG  P S  W +    I    
Sbjct: 214 SDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV-SGYPPPSFTWLRGEEVIQLRS 266

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  148 bits (374), Expect = 5e-42
 Identities = 66/278 (23%), Positives = 108/278 (38%), Gaps = 61/278 (21%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL----AGDRFVMGQYMSLHGDVISHVNIS 67
            T   G  V LKC   G+P P I W+ +   L       R V+    +L         IS
Sbjct: 131 ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ--------IS 182

Query: 68  SVRVEDSGIYQCTATNRVGSQT-HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
            ++  DSG+Y+C+A N   ++T + A++R+   PG  + +  +   S ++    G  A +
Sbjct: 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPS-NVIAIEGKDAVL 241

Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
           +C V+ G PP + +WL+    I   ++      G                          
Sbjct: 242 ECCVS-GYPPPSFTWLRGEEVIQLRSKKYSLLGG-------------------------- 274

Query: 187 VASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI--G 244
                           S+L I+ ++   SG YTCV +    + + S+ L V VPP     
Sbjct: 275 ----------------SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNH 318

Query: 245 PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
           P       E +  +  C V SG    ++ W KNG  + 
Sbjct: 319 PSNL-YAYESMDIEFECAV-SGKPVPTVNWMKNGDVVI 354

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  145 bits (368), Expect = 4e-41
 Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 28/203 (13%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDV 60
              + +        G    L+C  +G P P  +W      +     ++ +    +L    
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLL--- 278

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP---GQPQDVKLVTSNSRSIK 117
                IS+V  +DSG Y C  T +  + + SA++ V   P     P ++           
Sbjct: 279 -----ISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNL----------Y 323

Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
            +       +C V+ G P  T++W+KNG  ++      I        +L I  +     G
Sbjct: 324 AYESMDIEFECAVS-GKPVPTVNWMKNGDVVIPSDYFQIVGGS----NLRILGVVKSDEG 378

Query: 178 NYTCVASNTVASDNHSSNLRVNE 200
            Y CVA N   +   S+ L V +
Sbjct: 379 FYQCVAENEAGNAQSSAQLIVPK 401

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 80.3 bits (198), Expect = 2e-17
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGD 59
             P  +             +  +C  +G P P ++W  +G  +   D F +    +L   
Sbjct: 311 VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLR-- 368

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
                 I  V   D G YQC A N  G+   SA + V
Sbjct: 369 ------ILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  145 bits (366), Expect = 7e-43
 Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 15/198 (7%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN----I 66
           +  +    PV L C  +G  +P + WK D            +  + + D ++ +      
Sbjct: 13  EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITF 72

Query: 67  SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
            SV  ED+G Y C  +   G+      +++      P       + +       G+RA +
Sbjct: 73  KSVTREDTGTYTCMVSEEGGNSYGEVKVKL-IVLVPPS----KPTVNIPSSATIGNRAVL 127

Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE------YTSSLSIATLSTGHSGNYT 180
            C    G PP   +W K+G+ + ++ + T   S         T  L    LS   +G Y+
Sbjct: 128 TCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYS 187

Query: 181 CVASNTVASDNHSSNLRV 198
           C A N   +   S+ +R+
Sbjct: 188 CEARNGYGTPMTSNAVRM 205

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 79.6 bits (196), Expect = 6e-18
 Identities = 27/178 (15%), Positives = 52/178 (29%), Gaps = 36/178 (20%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           V S+   +++   +   + C  + G     + W  +            + +  Y      
Sbjct: 7   VHSSEPEVRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYED---- 61

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
                                       RV    + ++  +++   +G YTC+ S    +
Sbjct: 62  ----------------------------RVTFLPTGITFKSVTREDTGTYTCMVSEEGGN 93

Query: 229 DNHSSN--LRVNVPPHIGPFTF-GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
                   L V VPP             G R  + C  Q G  P    W+K+G+ +  
Sbjct: 94  SYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT 151

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  144 bits (365), Expect = 1e-42
 Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 8/202 (3%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P+     + QT   G   S  C ATG+P P I W   G  ++  RF   + +       S
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRF---EVIEFDDGSGS 63

Query: 63  HVNISSVRV-EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
            + I  +R   D  IY+C A+N VG  + S  + V      P+    +    +   V   
Sbjct: 64  VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPIL--SDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
             A + C  + G+P   I+W K+ LP+   ++     +   E   +L I        G Y
Sbjct: 124 RTATMLCAAS-GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182

Query: 180 TCVASNTVASDNHSS-NLRVNE 200
            CVA+N+  +   +  NL V  
Sbjct: 183 ECVATNSAGTRYSAPANLYVRG 204

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 36/186 (19%), Positives = 50/186 (26%), Gaps = 48/186 (25%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
                 SG  A   C  T GDP   I W K G  + +     I       S L I  L T
Sbjct: 14  VDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRT 72

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
                                                       Y CVASN V   + S+
Sbjct: 73  PR--------------------------------------DEAIYECVASNNVGEISVST 94

Query: 234 NLRVNVPPHIGP----FTFG----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
            L V     I         G     +       + C   SG+    + W+K+ L +   +
Sbjct: 95  RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDTSN 153

Query: 286 ISITLT 291
            +  + 
Sbjct: 154 NNGRIK 159

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  148 bits (376), Expect = 2e-42
 Identities = 55/198 (27%), Positives = 78/198 (39%), Gaps = 23/198 (11%)

Query: 3   PQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDV 60
           P++  +F +    + G  V L+C A GNP P I W + DG P+A           L    
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILE--- 261

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
                I + + ED+G Y+C A N  G       +  Y  P               I V  
Sbjct: 262 -----IPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP-------NWVQIINDIHVAM 309

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
            +    +C    G P  T  WLKNG P+L+   I I        +L+I  ++   +G Y 
Sbjct: 310 EESVFWECKAN-GRPKPTYRWLKNGDPLLTRDRIQIEQ-----GTLNITIVNLSDAGMYQ 363

Query: 181 CVASNTVASDNHSSNLRV 198
           CVA N       S+ L V
Sbjct: 364 CVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  133 bits (336), Expect = 1e-36
 Identities = 60/338 (17%), Positives = 96/338 (28%), Gaps = 81/338 (23%)

Query: 10  IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
           +         V L C   GNP PHI WKL+G  +      M    S+     S +  +  
Sbjct: 16  MFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV---DIGMDFRYSVVDG--SLLINNPN 70

Query: 70  RVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQC 128
           + +D+G YQC ATN  G+  +  A ++           +       ++ V  G    + C
Sbjct: 71  KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTR------STVSVRRGQGMVLLC 124

Query: 129 LVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
                   L+ +W+ N  P   D      + +G    +L IA +     GNYTCV +NTV
Sbjct: 125 GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG----NLYIAKVEKSDVGNYTCVVTNTV 180

Query: 188 ASDNHSSN---LRVNEYTSSLSIA-----------TLSTGHSGNYTCVAS---------- 223
            +         L +                         G +    C A           
Sbjct: 181 TNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240

Query: 224 --------------------------------------NTVASDNHSSNLRVNVPPHI-G 244
                                                 N+   +     L     P+   
Sbjct: 241 RADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ 300

Query: 245 PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
                 +         C   +G    + +W KNG  + 
Sbjct: 301 IINDIHVAMEESVFWECKA-NGRPKPTYRWLKNGDPLL 337

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 58/190 (30%)

Query: 102 QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161
           +P  V +   +S         +  + C V KG+P   I W  NG  +             
Sbjct: 11  EPSHV-MFPLDSE------EKKVKLSCEV-KGNPKPHIRWKLNGTDV------------- 49

Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLS-TGHSGNYTC 220
                                        +   + R +    SL I   + T  +G Y C
Sbjct: 50  -----------------------------DIGMDFRYSVVDGSLLINNPNKTQDAGTYQC 80

Query: 221 VASN---TVASDNHSSNLRVNVPPHI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWY 275
           +A+N   T+ S    + L+     +      +   +  G    + C        LS  W 
Sbjct: 81  IATNSFGTIVS--REAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWI 138

Query: 276 KNGLAISQPD 285
            N     Q +
Sbjct: 139 FNEYPSYQDN 148

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score =  144 bits (364), Expect = 2e-42
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 12/204 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P++I       ++   P +L C   G P P I W  DG P++ +     +     G +  
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69

Query: 63  HVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           +  +   + +D G Y C A NRVG   +  A +++                 +  +V  G
Sbjct: 70  YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR------DDFRVEPKDTRVAKG 123

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS----SLSIATLSTGHSG 177
           + A ++C   KG P  T+ W+K+G+P+     ++  +S         +L I+ +     G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183

Query: 178 NYTCVASNTVASDNHSS-NLRVNE 200
           NY C+A N V +   S   L V  
Sbjct: 184 NYKCIAQNLVGTRESSYAKLIVQV 207

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 40/175 (22%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
             + V   + A + C V  G P  TI W K+G P+ ++ + + R   +   +L       
Sbjct: 17  TDLVVKKNEPATLNCKVE-GKPEPTIEWFKDGEPVSTNEKKSHRVQFK-DGALFF----- 69

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHS 232
                                           ++        G Y CVA N V  + +  
Sbjct: 70  ------------------------------YRTMQGKKEQDGGEYWCVAKNRVGQAVSRH 99

Query: 233 SNLRVNV-PPHIG-PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
           ++L++ V             + +G    + C    G    +L W K+G+ +    
Sbjct: 100 ASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLK 154

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  148 bits (375), Expect = 3e-42
 Identities = 49/199 (24%), Positives = 75/199 (37%), Gaps = 18/199 (9%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVI 61
           P   Y       + G    + C+   NP  + ++  +G  + G+    + ++    G  +
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 272

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
                 +   ED G+Y C   N VG  Q HS  + V  AP      K      + I V  
Sbjct: 273 L---FKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP------KYEQKPEKVIVVKQ 323

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
           G    + C VT G P   + W  N  P+ S    T+  SG     L I  +  G  G Y 
Sbjct: 324 GQDVTIPCKVT-GLPAPNVVWSHNAKPL-SGGRATVTDSG-----LVIKGVKNGDKGYYG 376

Query: 181 CVASNTVASDNHSSNLRVN 199
           C A+N        + ++VN
Sbjct: 377 CRATNEHGDKYFETLVQVN 395

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  126 bits (318), Expect = 6e-34
 Identities = 47/292 (16%), Positives = 75/292 (25%), Gaps = 56/292 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL---AGDRFVMGQYMSLHG 58
           P L  +  +   +   P  L+CI  GN      SWK DG        +  +     SL  
Sbjct: 7   PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV- 65

Query: 59  DVISHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIK 117
                      +  D G YQC A    G   +     R       P              
Sbjct: 66  -------FLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKT-------HEKT 111

Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI---RSSGEYTSSLSIATLS-- 172
              G    + C++    P   I+W K       +A++T    R +     +L    ++  
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKE 171

Query: 173 -TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 231
                  Y C A N                               +   V          
Sbjct: 172 DVSDIYKYVCTAKNAA----------------------------VDEEVVLVEYEIKGVT 203

Query: 232 SSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
             N      P     +       G  T + C+    +      ++KNG  ++
Sbjct: 204 KDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY-GSNPMGYPNYFKNGKDVN 254

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  121 bits (305), Expect = 4e-32
 Identities = 50/289 (17%), Positives = 82/289 (28%), Gaps = 51/289 (17%)

Query: 12  QTLQPGPPVSLKC-IATGNPTPHISWKLDGYPLAGDRFVMGQ---YMSLHGDVISHVNIS 67
           +T   G P  L C +    P P I+WK        +  V        +     +    ++
Sbjct: 110 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVT 169

Query: 68  SVRVEDSGIYQCTATNRVGS-QTHSADMRVY---DAPGQPQDVKLVTSNSRSIKVHSGDR 123
              V D   Y CTA N     +    +  +          +   +    S+ +   +GD 
Sbjct: 170 KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDV 229

Query: 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVA 183
             + C+    +P    ++ KNG  +  + E  I                           
Sbjct: 230 TMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITR------------------------- 263

Query: 184 SNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN-HSSNLRVNVPPH 242
                                L   T      G YTC   N V     HS  L V   P 
Sbjct: 264 -------------HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK 310

Query: 243 I--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
               P     + +G    + C V +G    ++ W  N   +S    ++T
Sbjct: 311 YEQKPEKVIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLSGGRATVT 358

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  142 bits (361), Expect = 3e-42
 Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 9/200 (4%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P    +     ++     +L C  TG+P P + W   G  +  D   +   +        
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG--LKYRIQEFKGGYH 62

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG--QPQDVKLVTSNSRSIKVHS 120
            + I+SV  +D+ +YQ  ATN+ GS + +A + V        P+ ++ +     ++    
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGM----GAVHALR 118

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
           G+   ++   + G P   I+W K    I ++    +  +  +TS +    +    +G Y 
Sbjct: 119 GEVVSIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177

Query: 181 CVASNTVASDNHSSNLRVNE 200
             A N    D  +  L V +
Sbjct: 178 VCAKNRFGIDQKTVELDVAD 197

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 33/184 (17%), Positives = 51/184 (27%), Gaps = 49/184 (26%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLS 172
           R++ V     A + C VT G P   + W + G  I++D     I+        L I    
Sbjct: 12  RNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLII---- 66

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
                      ++    D                        +  Y   A+N   S + +
Sbjct: 67  -----------ASVTDDD------------------------ATVYQVRATNQGGSVSGT 91

Query: 233 SNLRVNVPPHIGPFTFGELMEGVRTQV------ACVVQSGDLPLSLQWYKNGLAISQ-PD 285
           ++L V VP  I      E M  V               SG     + W K    I     
Sbjct: 92  ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGH 150

Query: 286 ISIT 289
             + 
Sbjct: 151 YQVI 154

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  145 bits (368), Expect = 6e-42
 Identities = 47/283 (16%), Positives = 86/283 (30%), Gaps = 32/283 (11%)

Query: 6   IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHV 64
             +++   +     V LKC         HI W  D   ++ D     ++    G  I  +
Sbjct: 10  FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD----EKHDFKDG--ICTL 63

Query: 65  NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP---GQPQDVKLVTSNSRSIKVHSG 121
            I+    +D+GIY+    +  G       +          +      +++    I+  + 
Sbjct: 64  LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS-TA 122

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
           +   +   VT     L ++W  NG  I     +    +GE    L I   +    G Y  
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE-QIWLQINEPTPNDKGKYVM 181

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
              +       + +L    Y                    A         ++    N   
Sbjct: 182 ELFDGKTGHQKTVDLSGQAYDE------------------AYAEFQRLKQAAIAEKNRAR 223

Query: 242 HIGPF-TFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
            +G       + EG    + C V  GD P  + W KN  A++ 
Sbjct: 224 VLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALAS 265

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  137 bits (346), Expect = 9e-39
 Identities = 41/225 (18%), Positives = 76/225 (33%), Gaps = 31/225 (13%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATG----------NPTPHISWKLDGYPL-AGDRFV 49
           +  +L+ +  ++       + ++  A G               ++W  +G  +   DR  
Sbjct: 97  AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK 156

Query: 50  MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY------------ 97
            G      G+ I  + I+     D G Y     +       + D+               
Sbjct: 157 TGV----TGEQIW-LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRL 211

Query: 98  --DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEIT 155
              A  +    +++      + +  G    + C V  GDPP  +SWLKN   + SD    
Sbjct: 212 KQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCN 270

Query: 156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
           ++     T+  +I  +ST  SG Y  V  N   S+     + V  
Sbjct: 271 LKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 73.8 bits (181), Expect = 3e-15
 Identities = 26/190 (13%), Positives = 43/190 (22%), Gaps = 57/190 (30%)

Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
           S +V       ++C V        I W K+   I  D +   +                 
Sbjct: 15  SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI-------------- 60

Query: 175 HSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 234
                                        +L I   S   +G Y  +  +    D     
Sbjct: 61  ----------------------------CTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 92

Query: 235 LRVNVPPHI------------GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
           L       +                     EG++  +   V      L + W  NG AI 
Sbjct: 93  LVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQ--LYSFVTYYVEDLKVNWSHNGSAIR 150

Query: 283 Q-PDISITLT 291
               +   +T
Sbjct: 151 YSDRVKTGVT 160

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  142 bits (360), Expect = 7e-42
 Identities = 41/201 (20%), Positives = 69/201 (34%), Gaps = 20/201 (9%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN----IS 67
             +     + L C  +G  +P + WK              Q  + + D ++  +     S
Sbjct: 11  VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFS 70

Query: 68  SVRVEDSGIYQCTATNRVGSQTHSADMR--VYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
           SV  +D+G Y C  +   G       +   V   P          + S    V  G+RA 
Sbjct: 71  SVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPP-------SKPTISVPSSVTIGNRAV 123

Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG-------EYTSSLSIATLSTGHSGN 178
           + C    G PP   SW K+G+ +L+      R+           +  L    ++   SG 
Sbjct: 124 LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE 183

Query: 179 YTCVASNTVASDNHSSNLRVN 199
           Y C A N   +   S    ++
Sbjct: 184 YYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 73.8 bits (181), Expect = 6e-16
 Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 36/180 (20%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           V +    ++V   +   + C  + G     + W        +      + +  Y      
Sbjct: 4   VYTAQSDVQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYAD---- 58

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
                                       RV   +S ++ ++++   +G YTC+ S     
Sbjct: 59  ----------------------------RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQ 90

Query: 229 DNHSS--NLRVNVPPHIGPFTF-GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
           +      +L V VPP     +    +  G R  + C    G  P    W+K+G+++   D
Sbjct: 91  NYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 150

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  139 bits (353), Expect = 7e-41
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 10/201 (4%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P++I K   Q ++ G   S  C A G+P P I W+ +G  ++G +      +      IS
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRY--TVLEQPGGIS 64

Query: 63  HVNISSVRV-EDSGIYQCTATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
            + I  VR   D   Y+C A N VG + +  A + +Y+    P    ++T    +  +  
Sbjct: 65  ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
           G    + C    G+P   I W+KN   +           G     L I        G Y 
Sbjct: 125 GHTVLMTCKAI-GNPTPNIYWIKNQTKVDMSNPRYSLKDG----FLQIENSREEDQGKYE 179

Query: 181 CVASNTVASDN-HSSNLRVNE 200
           CVA N++ +++  ++NL V  
Sbjct: 180 CVAENSMGTEHSKATNLYVKV 200

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 32/180 (17%), Positives = 52/180 (28%), Gaps = 50/180 (27%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLS 172
           ++  V  G  A   C    GDPP +I W KNG  +  + +  T+         +SI    
Sbjct: 14  QNQGVRVGGVASFYCAAR-GDPPPSIVWRKNGKKVSGTQSRYTVLEQP---GGISI---- 65

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNH 231
                                  LR+    +              Y CVA N V  + + 
Sbjct: 66  -----------------------LRIEPVRAG--------RDDAPYECVAENGVGDAVSA 94

Query: 232 SSNLRVNVPPHI--GPFTFGELMEGVRTQV------ACVVQSGDLPLSLQWYKNGLAISQ 283
            + L +        G     +       +V       C    G+   ++ W KN   +  
Sbjct: 95  DATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKA-IGNPTPNIYWIKNQTKVDM 153

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  142 bits (360), Expect = 8e-41
 Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 7/199 (3%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P    +     ++     +L C  TG+P P + W   G  +  D     +Y         
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG---LKYRIQEFKGGY 61

Query: 63  HV-NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           H   I+SV  +D+ +YQ  ATN+ GS + +A + V           L      ++    G
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTL--EGMGAVHALRG 119

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
           +   ++   + G P   I+W K    I ++    +  +  +TS +    +    +G Y  
Sbjct: 120 EVVSIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178

Query: 182 VASNTVASDNHSSNLRVNE 200
            A N    D  +  L V +
Sbjct: 179 CAKNRFGIDQKTVELDVAD 197

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 97.9 bits (244), Expect = 5e-24
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 5/118 (4%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
           P+ +          G  VS+K   +G P P I+W+     +     + +           
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT----RSFT 160

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
           S V  + V  +D+G Y   A NR G    + ++ V D P  P+ VK+   +  S+ + 
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLT 218

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 74.8 bits (184), Expect = 9e-16
 Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 36/170 (21%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL-SDAEITIRSSGEYTSSLSIATLS 172
           R++ V     A + C VT G P   + W + G  I+    +  I+        L IA+++
Sbjct: 12  RNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 70

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
              +  Y   A+N   S + +++L V                                  
Sbjct: 71  DDDATVYQVRATNQGGSVSGTASLEVEVPA------------------------------ 100

Query: 233 SNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
              ++++P  +        + G    +     SG     + W K    I 
Sbjct: 101 ---KIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLID 146

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  140 bits (354), Expect = 1e-40
 Identities = 49/200 (24%), Positives = 72/200 (36%), Gaps = 17/200 (8%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             +     V  +C A GNPTP ISW  +G    G+  + G  +      +    + SV  
Sbjct: 25  LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV---MESVVP 81

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
            D G Y C   N+ GS   +  + V +    P    L      +     G      C V 
Sbjct: 82  SDRGNYTCVVENKFGSIRQTYTLDVLERS--PHRPILQAGLPANQTAVLGSDVEFHCKVY 139

Query: 132 KGDPPLTISWLK-----------NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
             D    I WLK           +G P ++  +  I  S E    L +A +S    G Y 
Sbjct: 140 -SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYL 198

Query: 181 CVASNTVASDNHSSNLRVNE 200
           C A+N +     +  L V+ 
Sbjct: 199 CRATNFIGVAEKAFWLSVHG 218

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 90.4 bits (224), Expect = 1e-21
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWK----LDGYPLAGD----RFVMGQYM 54
                    QT   G  V   C    +  PHI W     ++G  +  D      V+  ++
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174

Query: 55  SLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDV 106
           S   +    + +++V   D G Y C ATN +G    +  + V+      +++
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEEL 226

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 82.3 bits (203), Expect = 9e-19
 Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 11/141 (7%)

Query: 91  SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 150
             D  V      P   +    + + + V + +    +C    G+P  +ISWLKNG     
Sbjct: 2   DPDTGVDTGA--PYWTRPERMDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRG 58

Query: 151 DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIA-- 208
           +  I          SL + ++     GNYTCV  N   S   +  L V E +    I   
Sbjct: 59  EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQA 118

Query: 209 ------TLSTGHSGNYTCVAS 223
                 T   G    + C   
Sbjct: 119 GLPANQTAVLGSDVEFHCKVY 139

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  139 bits (352), Expect = 2e-40
 Identities = 40/199 (20%), Positives = 63/199 (31%), Gaps = 16/199 (8%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             +     V  +C A GNP P + W  +G     +  + G  +      +    + SV  
Sbjct: 29  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---MESVVP 85

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
            D G Y C   N  GS  H+  + V +         L      +     G      C V 
Sbjct: 86  SDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI--LQAGLPANASTVVGGDVEFVCKVY 143

Query: 132 KGDPPLTISWLKNGLPILSDAEI----------TIRSSGEYTSSLSIATLSTGHSGNYTC 181
             D    I W+K+     S                  +      L++  ++   +G Y C
Sbjct: 144 -SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYIC 202

Query: 182 VASNTVASDNHSSNLRVNE 200
             SN +   N S+ L V  
Sbjct: 203 KVSNYIGQANQSAWLTVLP 221

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 83.4 bits (206), Expect = 3e-19
 Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 7/103 (6%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-------RFVMGQYMSLHGDVISHV 64
            +   G  V   C    +  PHI W                    + ++  ++      +
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 187

Query: 65  NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVK 107
            + +V   D+G Y C  +N +G    SA + V      P   K
Sbjct: 188 ALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 82.3 bits (203), Expect = 8e-19
 Identities = 41/204 (20%), Positives = 59/204 (28%), Gaps = 55/204 (26%)

Query: 81  ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTIS 140
           A + V   +++           P          R   V + +    +C    G+P  T+ 
Sbjct: 2   AEDFVSENSNNK--------RAPYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMR 52

Query: 141 WLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
           WLKNG     +  I          SL +                + V SD          
Sbjct: 53  WLKNGKEFKQEHRIGGYKVRNQHWSLIM---------------ESVVPSD---------- 87

Query: 201 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGEL------MEG 254
                          GNYTCV  N   S NH+ +L V       P     L      + G
Sbjct: 88  --------------KGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVG 133

Query: 255 VRTQVACVVQSGDLPLSLQWYKNG 278
              +  C V   D    +QW K+ 
Sbjct: 134 GDVEFVCKV-YSDAQPHIQWIKHV 156

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  137 bits (347), Expect = 4e-40
 Identities = 48/200 (24%), Positives = 80/200 (40%), Gaps = 23/200 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL--AGDRFVMGQYMSLHGDV 60
           P +               +  C     P P ISW  +   +     R+     +  +G +
Sbjct: 8   PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYS----IRENGQL 63

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
           ++   I SV   D GIY CTA N VG +      ++V   P        +T    ++K+ 
Sbjct: 64  LT---ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKP-------KITRPPINVKII 113

Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
            G +A + C    G+P  ++SW+K    +  ++ I +  SG    SL I  +    +G Y
Sbjct: 114 EGLKAVLPCTTM-GNPKPSVSWIKGDSALRENSRIAVLESG----SLRIHNVQKEDAGQY 168

Query: 180 TCVASNTVASDN-HSSNLRV 198
            CVA N++ +       L V
Sbjct: 169 RCVAKNSLGTAYSKLVKLEV 188

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 65.1 bits (159), Expect = 6e-13
 Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 47/173 (27%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLS 172
            ++     + A   C V    P   ISW +N + I L D   +IR +G            
Sbjct: 15  ETVDALVEEVATFMCAVE-SYPQPEISWTRNKILIKLFDTRYSIRENG------------ 61

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNH 231
                                           L+I ++     G Y C A+N V  +   
Sbjct: 62  ------------------------------QLLTILSVEDSDDGIYCCTANNGVGGAVES 91

Query: 232 SSNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
              L+V + P I  P    +++EG++  + C    G+   S+ W K   A+ +
Sbjct: 92  CGALQVKMKPKITRPPINVKIIEGLKAVLPCTT-MGNPKPSVSWIKGDSALRE 143

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  141 bits (356), Expect = 5e-40
 Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 18/201 (8%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             +     V  +C A GNPTP ISW  +G    G+  + G  +      +    + SV  
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV---MESVVP 189

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
            D G Y C   N+ GS   +  + V +    P    L      +     G      C V 
Sbjct: 190 SDRGNYTCVVENKFGSIRQTYTLDVLERS--PHRPILQAGLPANQTAVLGSDVEFHCKVY 247

Query: 132 KGDPPLTISWLK----NGLPILSDAEITI--------RSSGEYTSSLSIATLSTGHSGNY 179
             D    I WLK    NG  +  D    +         ++ +    LS+  ++   +G Y
Sbjct: 248 -SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306

Query: 180 TCVASNTVASDNHSSNLRVNE 200
           TC+A N++   +HS+ L V  
Sbjct: 307 TCLAGNSIGFSHHSAWLVVLP 327

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  136 bits (343), Expect = 5e-38
 Identities = 52/249 (20%), Positives = 73/249 (29%), Gaps = 37/249 (14%)

Query: 3   PQLIYKFIQQ-TLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           P       +Q     G  V L C    G P     W  DG  L     V+     L    
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQ--- 64

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP------------------GQ 102
                + +   EDSG Y C          H +                          G 
Sbjct: 65  -----VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119

Query: 103 PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY 162
           P   +    + + + V + +    +C    G+P  +ISWLKNG     +  I        
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178

Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSI--------ATLSTGH 214
             SL + ++     GNYTCV  N   S   +  L V E +    I         T   G 
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 238

Query: 215 SGNYTCVAS 223
              + C   
Sbjct: 239 DVEFHCKVY 247

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 79.7 bits (196), Expect = 3e-17
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWK----LDGYPLAGDRFVMGQYMSLHG 58
                    QT   G  V   C    +  PHI W     ++G  +  D       +   G
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282

Query: 59  DVISHVN-----ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
              +        + +V  ED+G Y C A N +G   HSA + V  A 
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 58.1 bits (140), Expect = 6e-10
 Identities = 33/217 (15%), Positives = 50/217 (23%), Gaps = 77/217 (35%)

Query: 95  RVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI 154
           R  + P               +   SGD   + C    G P     W+K+G  ++    +
Sbjct: 3   RAAEVP------GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERV 56

Query: 155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH 214
            +         L +                N    D                        
Sbjct: 57  LVG-----PQRLQV---------------LNASHED------------------------ 72

Query: 215 SGNYTCVASNTVASDNHSSNLRVNVPPHIGP------------------FTFGELMEGVR 256
           SG Y+C    T     H S    + P                       +T  E M+   
Sbjct: 73  SGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKL 132

Query: 257 TQVA--------CVVQSGDLPLSLQWYKNGLAISQPD 285
             V         C   +G+   S+ W KNG       
Sbjct: 133 LAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEH 168

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  141 bits (357), Expect = 1e-39
 Identities = 48/197 (24%), Positives = 71/197 (36%), Gaps = 24/197 (12%)

Query: 3   PQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
           P +  KF        G  V+L+C A GNP P I W+                        
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSE---------- 256

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
             ++I +V  ED G Y+C A N  G  T+   + ++  P                +   G
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPD-------WLDVITDTEADIG 309

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
                 C+ + G P   + WL++G P+ S   I +         L  + L    SG Y C
Sbjct: 310 SDLRWSCVAS-GKPRPAVRWLRDGQPLASQNRIEVSG-----GELRFSKLVLEDSGMYQC 363

Query: 182 VASNTVASDNHSSNLRV 198
           VA N   +   S+ L V
Sbjct: 364 VAENKHGTVYASAELTV 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  130 bits (329), Expect = 1e-35
 Identities = 60/338 (17%), Positives = 102/338 (30%), Gaps = 81/338 (23%)

Query: 10  IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
           +         V+L C A  NP     WK++G  L   +        L       V  + V
Sbjct: 15  LFPEGSAEEKVTLTCRARANPPATYRWKMNGTEL---KMGPDSRYRLVAG--DLVISNPV 69

Query: 70  RVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQC 128
           + +D+G YQC ATN  G+  +  A +R           +        +K+  G      C
Sbjct: 70  KAKDAGSYQCVATNARGTVVSREASLRFGFLQ------EFSAEERDPVKITEGWGVMFTC 123

Query: 129 LVTKGDPPLTISWLKNGLPIL---SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
                 P L+  WL N  P            +++G    +L IA       GNY+C A++
Sbjct: 124 SPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG----NLYIAKTEASDLGNYSCFATS 179

Query: 186 TVASDNHSSNLRVNEYTSSLSIA---------------TLSTGHSGNYTCVAS------- 223
            +     S   + ++ + +   A                  TG      C A        
Sbjct: 180 HIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI 239

Query: 224 --------------------------------------NTVASDNHSSNLRVNVPPHI-G 244
                                                 N    D +   + ++  P    
Sbjct: 240 KWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLD 299

Query: 245 PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
             T  E   G   + +CV  SG    +++W ++G  ++
Sbjct: 300 VITDTEADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLA 336

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 30/183 (16%), Positives = 49/183 (26%), Gaps = 58/183 (31%)

Query: 102 QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161
           QP             +  + ++  + C   + +PP T  W  NG  +             
Sbjct: 10  QPAHTLFP-------EGSAEEKVTLTCRA-RANPPATYRWKMNGTEL------------- 48

Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIAT-LSTGHSGNYTC 220
                                            + R       L I+  +    +G+Y C
Sbjct: 49  -----------------------------KMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79

Query: 221 VASN---TVASDNHSSNLRVNVPPHI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWY 275
           VA+N   TV S    ++LR               ++ EG      C        LS +W 
Sbjct: 80  VATNARGTVVS--REASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL 137

Query: 276 KNG 278
            N 
Sbjct: 138 LNE 140

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  143 bits (361), Expect = 2e-39
 Identities = 48/284 (16%), Positives = 82/284 (28%), Gaps = 64/284 (22%)

Query: 11  QQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDV-ISHVNIS 67
           Q  L+ G P+ ++C A   N    ++W+L+   L  G+ F M  Y +    + I    +S
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295

Query: 68  SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
           SV   D+G Y C+++        SA + + +           T++S   ++   +     
Sbjct: 296 SVARNDTGYYTCSSSKHPSQ---SALVTIVEKG-----FINATNSSEDYEIDQYEEFCFS 347

Query: 128 CLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
               K  P +  +W  +                                           
Sbjct: 348 VRF-KAYPQIRCTWTFSRKSF--------------------------------------- 367

Query: 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFT 247
                    +  +   S+S         G Y   A N  A       L +   P +    
Sbjct: 368 -----PCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV---- 418

Query: 248 FGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
              L E   +Q +C    G    S  W K           IT  
Sbjct: 419 ---LAEASASQASCFS-DGYPLPSWTWKKCSDKSPNCTEEITEG 458

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  126 bits (318), Expect = 3e-33
 Identities = 26/284 (9%), Positives = 62/284 (21%), Gaps = 58/284 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
              +Y+     +     ++L+ +          W      L            L    + 
Sbjct: 49  SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHF-----DLQNRGVV 103

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            + I  +    +G Y     +   + T    + + +          + +  R       +
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTL--------LYTLRRPYFRKMEN 155

Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
           +  + C+     P   + W+            + +             L      +  C 
Sbjct: 156 QDALVCISE-SVPEPIVEWVLCDSQGE-----SCKEESPAVVKKEEKVLHELFGTDIRCC 209

Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
           A N            +    + L                             + +N  P 
Sbjct: 210 ARN-----------ELGRECTRLFT---------------------------IDLNQTPQ 231

Query: 243 IGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDI 286
                   L  G    + C     +    L W     A+ + + 
Sbjct: 232 TTLPQL-FLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY 274

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  117 bits (295), Expect = 4e-30
 Identities = 28/267 (10%), Positives = 67/267 (25%), Gaps = 59/267 (22%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
            +L CI+   P P + W L            G+        +       +        +C
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQ--------GESCKEESPAVVKKEEKVLHELFGTDIRC 208

Query: 80  TATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT 138
            A N +G   T    + +   P               + +  G+   ++C     +    
Sbjct: 209 CARNELGRECTRLFTIDLNQTPQTT---------LPQLFLKVGEPLWIRCKAVHVNHGFG 259

Query: 139 ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
           ++W      +       + +                                   S  R 
Sbjct: 260 LTWELENKALEEGNYFEMSTY----------------------------------STNRT 285

Query: 199 NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG---ELMEGV 255
                   +++++   +G YTC +S      + S+ + +     I         E+ +  
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHP---SQSALVTIVEKGFINATNSSEDYEIDQYE 342

Query: 256 RTQVACVVQSGDLPLSLQWYKNGLAIS 282
               +   +     +   W  +  +  
Sbjct: 343 EFCFSVRFK-AYPQIRCTWTFSRKSFP 368

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  111 bits (278), Expect = 7e-28
 Identities = 22/199 (11%), Positives = 45/199 (22%), Gaps = 34/199 (17%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             +               P    +W         ++  +    S+               
Sbjct: 336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSIS--------KFCNHK 387

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
              G Y   A N     T    + +   P               + +     +   C   
Sbjct: 388 HQPGEYIFHAENDDAQFTKMFTLNIRRKP--------------QV-LAEASASQASCFSD 432

Query: 132 KGDPPLTISWLKNGLPILSDAE----------ITIRSSGEYTSSLSIATLSTGHSGNYTC 181
            G P  + +W K      +  E             +  G++ SS ++            C
Sbjct: 433 -GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC 491

Query: 182 VASNTVASDNHSSNLRVNE 200
            A N++ +   +  L    
Sbjct: 492 CAYNSLGTSCETILLNSPG 510

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 63.2 bits (153), Expect = 2e-11
 Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 7/96 (7%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWK-------LDGYPLAGDRFVMGQYMSLHGDVISHV 64
           Q L         C + G P P  +WK            +    +       + G  +S  
Sbjct: 417 QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSS 476

Query: 65  NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
            ++        + +C A N +G+   +  +      
Sbjct: 477 TLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 43.1 bits (101), Expect = 7e-05
 Identities = 17/115 (14%), Positives = 32/115 (27%), Gaps = 24/115 (20%)

Query: 176 SGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 235
                CV  N   +D+                   S G S +Y  V+ +    ++    L
Sbjct: 7   LPVIKCVLINHKNNDS-------------------SVGKSSSYPMVSES---PEDLGCAL 44

Query: 236 RVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI-SQPDISIT 289
           R      +      E+       +  +V      +S  W     ++  QP   + 
Sbjct: 45  RPQSSGTVYEAAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSSLNCQPHFDLQ 98

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  139 bits (352), Expect = 1e-38
 Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 17/202 (8%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGD 59
           +        Q  L+ G P+ ++C A   N    ++W+L+   L  G+ F M  Y +    
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286

Query: 60  V-ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
           + I    +SSV   D+G Y C+++        SA + + +           T++S   ++
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKG-----FINATNSSEDYEI 338

Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
              +            P +  +W  +      +     +   +   S+S         G 
Sbjct: 339 DQYEEFCFSVRFK-AYPQIRCTWTFSRKSFPCE-----QKGLDNGYSISKFCNHKHQPGE 392

Query: 179 YTCVASNTVASDNHSSNLRVNE 200
           Y   A N  A       L +  
Sbjct: 393 YIFHAENDDAQFTKMFTLNIRS 414

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  129 bits (324), Expect = 1e-34
 Identities = 25/281 (8%), Positives = 58/281 (20%), Gaps = 58/281 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
              +Y+     +     ++L+ +          W      L            L    + 
Sbjct: 49  SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHF-----DLQNRGVV 103

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            + I  +    +G Y     +   + T    + + +          + +  R       +
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTL--------LYTLRRPYFRKMEN 155

Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
           +  + C+     P   + W+       S  E +     +                     
Sbjct: 156 QDALVCISE-SVPEPIVEWVLCDSQGESCKEESPAVVKKEEK------------------ 196

Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
                                      L      +  C A N +  +             
Sbjct: 197 --------------------------VLHELFGTDIRCCARNELGRECTRLFTIDLNQTP 230

Query: 243 IGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
                   L  G    + C     +    L W     A+ +
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  114 bits (286), Expect = 3e-29
 Identities = 24/267 (8%), Positives = 66/267 (24%), Gaps = 57/267 (21%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
            +L CI+   P P + W L             +        +       +        +C
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQG--------ESCKEESPAVVKKEEKVLHELFGTDIRC 208

Query: 80  TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTI 139
            A N +G +         +            +    + +  G+   ++C     +    +
Sbjct: 209 CARNELGRECTRLFTIDLNQT--------PQTTLPQLFLKVGEPLWIRCKAVHVNHGFGL 260

Query: 140 SWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
           +W      +       + +     + + I                               
Sbjct: 261 TWELENKALEEGNYFEMSTYSTNRTMIRI------------------------------- 289

Query: 200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG---ELMEGVR 256
                  +++++   +G YTC +S      + S+ + +     I         E+ +   
Sbjct: 290 ---LFAFVSSVARNDTGYYTCSSSKHP---SQSALVTIVEKGFINATNSSEDYEIDQYEE 343

Query: 257 TQVACVVQSGDLPLSLQWYKNGLAISQ 283
              +   +     +   W  +  +   
Sbjct: 344 FCFSVRFK-AYPQIRCTWTFSRKSFPC 369

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 69.3 bits (169), Expect = 1e-13
 Identities = 11/99 (11%), Positives = 18/99 (18%), Gaps = 15/99 (15%)

Query: 9   FIQQTLQP-------GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
           FI  T                       P    +W         ++  +    S+     
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSIS---- 381

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
                        G Y   A N     T    + +    
Sbjct: 382 ----KFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 23/110 (20%)

Query: 176 SGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 235
                CV  N   +D+                   S G S +Y  V+ +          L
Sbjct: 7   LPVIKCVLINHKNNDS-------------------SVGKSSSYPMVSESPEDLGCA---L 44

Query: 236 RVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
           R      +      E+       +  +V      +S  W     +++   
Sbjct: 45  RPQSSGTVYEAAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSSLNCQP 93

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  132 bits (334), Expect = 3e-38
 Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 20/191 (10%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHGDVISHVNISS 68
           Q  + G    + C  + +P P +SW      +   + +RF M    +L         I +
Sbjct: 12  QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ--------ILN 63

Query: 69  VRVEDSGIYQCTATNRVGSQTHSADMR-VYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
           +   D GIY+C        +    D+  + + P      +     S +     G+     
Sbjct: 64  INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQ----KSFNATAERGEEMTFS 119

Query: 128 CLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
           C  + G P   ISW +NG  I  + +  ++ S    + L++  +     G Y C A+N  
Sbjct: 120 CRAS-GSPEPAISWFRNGKLIEENEKYILKGSN---TELTVRNIINSDGGPYVCRATNKA 175

Query: 188 ASDNHSSNLRV 198
             D   + L+V
Sbjct: 176 GEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 81.4 bits (201), Expect = 7e-19
 Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 6/96 (6%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
              +  K    T + G  ++  C A+G+P P ISW  +G  +  +     +Y+    +  
Sbjct: 98  AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE----KYILKGSN-- 151

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
           + + + ++   D G Y C ATN+ G     A ++V+
Sbjct: 152 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 65.2 bits (159), Expect = 5e-13
 Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 48/177 (27%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
              +   G+ A V C V+   P   +SWL +   + + ++                    
Sbjct: 10  SPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFA---------------- 52

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
                        + ++N            +L I  ++    G Y C        +    
Sbjct: 53  -------------MLANN------------NLQILNINKSDEGIYRCEGRVEARGEIDFR 87

Query: 234 NLR--VNVPPHIG---PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
           ++   VNVPP I             G     +C   SG    ++ W++NG  I + +
Sbjct: 88  DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENE 143

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  135 bits (341), Expect = 3e-38
 Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 20/202 (9%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHGD 59
                    Q  + G    + C  + +P P +SW      +   + +RF M    +L   
Sbjct: 99  LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ-- 156

Query: 60  VISHVNISSVRVEDSGIYQCTATN-RVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
                 I ++   D GIY+C       G       + + + P      +     S +   
Sbjct: 157 ------ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQ----KSFNATA 206

Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
             G+     C  + G P   ISW +NG  I  + +  ++      + L++  +     G 
Sbjct: 207 ERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILK---GSNTELTVRNIINSDGGP 262

Query: 179 YTCVASNTVASDNHSSNLRVNE 200
           Y C A+N    D   + L+V  
Sbjct: 263 YVCRATNKAGEDEKQAFLQVFV 284

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  134 bits (339), Expect = 6e-38
 Identities = 51/290 (17%), Positives = 91/290 (31%), Gaps = 66/290 (22%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
            Q+     +  L  G      C A G P     +   G  +   +    + +     V S
Sbjct: 5   LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ----RVVVQKEGVRS 60

Query: 63  HVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAP---GQPQDVKLVTSNSRSIKV 118
            + I +  +ED+GIY+C AT+  G  Q  +  + +Y                      + 
Sbjct: 61  RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQ----------EF 110

Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE--ITIRSSGEYTSSLSIATLSTGHS 176
             G+ A V C V+   P   +SWL +   + + ++    + ++     +L I  ++    
Sbjct: 111 KQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLANN----NLQILNINKSDE 165

Query: 177 GNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR 236
           G Y C        +    ++ V                                      
Sbjct: 166 GIYRCEGRVEARGEIDFRDIIV-------------------------------------I 188

Query: 237 VNVPPHI---GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
           VNVPP I             G     +C   SG    ++ W++NG  I +
Sbjct: 189 VNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEE 237

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 93.3 bits (232), Expect = 2e-22
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVI 61
             +  K    T + G  ++  C A+G+P P ISW  +G  +   +++++    +      
Sbjct: 195 ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT------ 248

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
             + + ++   D G Y C ATN+ G     A ++V+       
Sbjct: 249 -ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHH 290

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  132 bits (334), Expect = 5e-38
 Identities = 34/212 (16%), Positives = 64/212 (30%), Gaps = 37/212 (17%)

Query: 17  GPPVSLKC----------IATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGDVIS 62
              + ++           +        ++W  +G  +   DR      G+ + L      
Sbjct: 8   ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ----- 62

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDV--------------KL 108
              I+     D G Y     +       + D+          +               ++
Sbjct: 63  ---INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 119

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           +      + +  G    + C V  GDPP  +SWLKN   +       ++     T+  +I
Sbjct: 120 LGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTI 178

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
             +ST  SG Y  V  N   S+     + V  
Sbjct: 179 NGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 88.4 bits (219), Expect = 3e-21
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVI 61
             L       T+Q G  ++L C   G+P P +SW  +   LA  D       +       
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHC----NLKFEAGRT 173

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
           ++  I+ V   DSG Y     N+ GS+T    + V+
Sbjct: 174 AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 84.5 bits (209), Expect = 9e-20
 Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 30/185 (16%)

Query: 102 QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161
              D+K+ ++          +   +   VT     L ++W  NG  I     +    +GE
Sbjct: 7   SATDLKIQST---------AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE 57

Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221
               L I   +    G Y     +       + +L    Y                    
Sbjct: 58  -QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDE------------------ 98

Query: 222 ASNTVASDNHSSNLRVNVPPHIGPF-TFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLA 280
           A         ++    N    +G       + EG    + C V  GD P  + W KN  A
Sbjct: 99  AYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKA 157

Query: 281 ISQPD 285
           ++Q D
Sbjct: 158 LAQTD 162

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  134 bits (338), Expect = 8e-38
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 12/189 (6%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           Q  + G    + C    +  P I WK  G  +   +    +++ L  + +    I  ++ 
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD--VRFIVLSNNYL---QIRGIKK 164

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVY-DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
            D G Y+C        + +  D++V  + P   Q       +  +   + G    + C  
Sbjct: 165 TDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQ----ARQSIVNATANLGQSVTLVCDA 220

Query: 131 TKGDPPLTISWLKNGLPILSDAEITI-RSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
             G P  T+SW K+G PI ++ E        + +S L+I  +       Y C+A N    
Sbjct: 221 D-GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE 279

Query: 190 DNHSSNLRV 198
            + S +L+V
Sbjct: 280 QDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  120 bits (303), Expect = 1e-32
 Identities = 44/281 (15%), Positives = 84/281 (29%), Gaps = 62/281 (22%)

Query: 12  QTLQPGPPVSLKCIATGNPT-PHISW-KLDGYPLAGDRFVMGQYMSLHGDVISHV-NISS 68
             +  G      C   G+     ISW   +G  L+ ++    +   +  D  S    I +
Sbjct: 12  GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ---QRISVVWNDDDSSTLTIYN 68

Query: 69  VRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
             ++D+GIY+C  T   G+    + +++++          +  +     +   G+ A + 
Sbjct: 69  ANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL-------MFKNAPTPQEFKEGEDAVIV 121

Query: 128 CLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
           C V     P TI W   G  ++   ++                                 
Sbjct: 122 CDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLS--------------------------- 153

Query: 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN--LRVNVPPHIG- 244
                          + L I  +     G Y C        + +  +  + VNVPP +  
Sbjct: 154 --------------NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQA 199

Query: 245 --PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
                      G    + C    G    ++ W K+G  I  
Sbjct: 200 RQSIVNATANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIEN 239

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 92.2 bits (229), Expect = 5e-22
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
            Q     +  T   G  V+L C A G P P +SW  DG P+  +     +++       S
Sbjct: 197 VQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS--S 254

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
            + I +V   D   Y C A N+ G Q  S  ++V+
Sbjct: 255 ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAE-ITIRSSGEYTSSL 166
           V       ++  G+     C V        ISW   NG  +  + + I++  + + +S+L
Sbjct: 5   VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64

Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSS-NLRVNEY---TSSLSIATLSTGHSGNYTCVA 222
           +I   +   +G Y CV +    + + ++ N+++ +     ++ +      G      C  
Sbjct: 65  TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV 124

Query: 223 S 223
            
Sbjct: 125 V 125

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  133 bits (337), Expect = 2e-37
 Identities = 35/287 (12%), Positives = 78/287 (27%), Gaps = 33/287 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
           P      +         ++ +C     P    SW  D        R  +           
Sbjct: 4   PFTKEVVVNVDDDGVISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLEV-----ESKGNK 57

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGS----QTHSADMRVYDAPGQPQDVKLV-TSNSRSI 116
           + +    + ++D GIY C  T+  G          +++   A         V   +  ++
Sbjct: 58  TKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117

Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE-YTSSLSIATLSTGH 175
           ++    +        K      ++++ N   I    +  +          + +  L    
Sbjct: 118 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177

Query: 176 SGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 235
            G YT    +  A+++ +  L  + +                          ++      
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQ--------------------KEAEFQRQEW 217

Query: 236 RVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
                PH   +   E+       + C V +      + WYK+   IS
Sbjct: 218 IRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS 264

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  118 bits (297), Expect = 1e-31
 Identities = 25/200 (12%), Positives = 56/200 (28%), Gaps = 18/200 (9%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSV 69
            + L+ G           +    +++  +   +  G ++ M          I  + +  +
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM---HIDRNTGIIEMFMEKL 173

Query: 70  RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSR-----------SIKV 118
           + ED G Y     +   +   +  +         ++ +                  S +V
Sbjct: 174 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV 233

Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
                  ++C V        I W K+   I  D +   +       +L I   S   +G 
Sbjct: 234 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI---CTLLITEFSKKDAGI 290

Query: 179 YTCVASNTVASDNHSSNLRV 198
           Y  +  +    D     L  
Sbjct: 291 YEVILKDDRGKDKSRLKLVD 310

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 71.6 bits (175), Expect = 1e-14
 Identities = 19/185 (10%), Positives = 47/185 (25%), Gaps = 40/185 (21%)

Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS 172
             ++          +C      P    SW K+ +       + + S G   + ++   L 
Sbjct: 10  VVNVDDDGVISLNFECDK--MTPKSEFSWSKDYVSTEDSPRLEVESKG-NKTKMTFKDLG 66

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
               G Y+C  ++T                                   +S  +  +   
Sbjct: 67  MDDLGIYSCDVTDTDGI-------------------------------ASSYLIDEEELK 95

Query: 233 SNLRVNVPPHIGPFTFG-----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDI 286
             L ++                E++E  + +     +       + +  N   I + P  
Sbjct: 96  RLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKY 155

Query: 287 SITLT 291
            + + 
Sbjct: 156 KMHID 160

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 68.1 bits (166), Expect = 2e-13
 Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 11/97 (11%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRFVM-GQYMSLHGD 59
                +++   +     V LKC         HI W  D   +   ++        +L   
Sbjct: 222 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL-- 279

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
                 I+    +D+GIY+    +  G       +  
Sbjct: 280 ------ITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  135 bits (341), Expect = 2e-37
 Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 12/199 (6%)

Query: 6   IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHGDVIS 62
           I +   +T      V+L C A G P P I+WK          GD+ + G+         S
Sbjct: 4   IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            ++I  V++ DSG Y C A +R+G    S  + +  AP          SN        G+
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAP-------KFISNQTIYYSWEGN 116

Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR-SSGEYTSSLSIATLSTGHSGNYTC 181
              + C V   +PP +I W ++ L + +     ++  S      L IA  S    G Y C
Sbjct: 117 PINISCDVK-SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175

Query: 182 VASNTVASDNHSSNLRVNE 200
            A+N + +      L + +
Sbjct: 176 TATNHIGTRFQEYILALAD 194

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  102 bits (257), Expect = 2e-25
 Identities = 40/199 (20%), Positives = 65/199 (32%), Gaps = 38/199 (19%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P+ I          G P+++ C    NP   I W+ D   L        +  S       
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYS--TGRKM 158

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            + I+     D G Y CTATN +G++     + + D P  P  VK++  +  +       
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTA------ 212

Query: 123 RAGVQCLVTKGDPPLTISWLK----NGLPIL----------SDAEITIRSSGEYTSSLSI 168
                           +S+ K     G+PI           S+    +RS G  T  + +
Sbjct: 213 ---------------KVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQT-MVVL 256

Query: 169 ATLSTGHSGNYTCVASNTV 187
             L    +      A N  
Sbjct: 257 NNLEPNTTYEIRVAAVNGK 275

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 36/169 (21%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           ++   +   +  + C    G+P   I+W +              + G+ +    I     
Sbjct: 8   KNETTYENGQVTLVCDAE-GEPIPEITWKRAVDGFTF-------TEGDKSLDGRIEVKGQ 59

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
             S                           SL I  +    SG Y C A++ +     S 
Sbjct: 60  HGSS--------------------------SLHIKDVKLSDSGRYDCEAASRIGGHQKSM 93

Query: 234 NLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281
            L +   P      T     EG    ++C V   + P S+ W ++ L +
Sbjct: 94  YLDIEYAPKFISNQTIYYSWEGNPINISCDV-KSNPPASIHWRRDKLVL 141

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  134 bits (339), Expect = 4e-37
 Identities = 46/188 (24%), Positives = 64/188 (34%), Gaps = 23/188 (12%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
             L     +SL C A G P P   W K           V+   +      +    I    
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI---IKDAV 278

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
           VEDSG Y C   N VG ++    + V               +  +  V  G  A   C  
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVTAPL-------SAKIDPPTQTVDFGRPAVFTCQY 331

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
           T G+P  T+SW+K+G  I               S L I ++     G Y C   N   S 
Sbjct: 332 T-GNPIKTVSWMKDGKAIGHSE-----------SVLRIESVKKEDKGMYQCFVRNDRESA 379

Query: 191 NHSSNLRV 198
             S+ L++
Sbjct: 380 EASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  120 bits (301), Expect = 1e-31
 Identities = 49/295 (16%), Positives = 87/295 (29%), Gaps = 64/295 (21%)

Query: 12  QTLQPGPPVSLKCIA---TGNPTPHISWKLDGYPL------AGDRFVMGQYMSLHGDVIS 62
           + +  G    +KC+      +    +SW  D             ++++     LH     
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH----- 167

Query: 63  HVNISSVRVEDS-GIYQCTATNRVGSQT---HSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
              I  V  ED    YQC   +R+  +T    +    V   P      +      + +++
Sbjct: 168 ---IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 224

Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
                  + C    G P  +  W K                                   
Sbjct: 225 MVAHTISLLCPAQ-GFPAPSFRWYKFIEGTTRK--------------------------- 256

Query: 179 YTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238
                           N RV + + +L I       SG Y CV +N+V  ++  + L V 
Sbjct: 257 -----------QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305

Query: 239 VPPHI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
            P      P T   +  G      C   +G+   ++ W K+G AI   +  + + 
Sbjct: 306 APLSAKIDPPTQ-TVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGHSESVLRIE 358

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  104 bits (260), Expect = 8e-26
 Identities = 42/205 (20%), Positives = 66/205 (32%), Gaps = 30/205 (14%)

Query: 8   KFIQQ-----TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGD--V 60
            F+++              ++C A+GNP P I W        GD  V G          V
Sbjct: 5   VFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD--VPGLRQISSDGKLV 62

Query: 61  ISHVNISSVRVE-DSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
                    R E  + +Y C A N+ GS  +    +R   A     DV           V
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV-------NKEHV 115

Query: 119 HSGDRAGVQCLVTK--GDPPLTISWLKNGLPIL-----SDAEITIRSSGEYTSSLSIATL 171
             G+ A ++CL+     D    +SW  +           D +  +  SG     L I  +
Sbjct: 116 IRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG----ELHIREV 171

Query: 172 STGHS-GNYTCVASNTVASDNHSSN 195
                  +Y C   + +  +   S 
Sbjct: 172 GPEDGYKSYQCRTKHRLTGETRLSA 196

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 73.4 bits (180), Expect = 5e-15
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 14/96 (14%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           +          QT+  G P    C  TGNP   +SW  DG  +                 
Sbjct: 306 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------- 352

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
            S + I SV+ ED G+YQC   N   S   SA++++
Sbjct: 353 -SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 48/183 (26%)

Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE--ITIRSSGEYTSSLSIAT 170
           +  I   +   A ++C    G+P   I W+++    + D      I S G     L    
Sbjct: 11  TNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVPGLRQISSDG----KLVF-- 63

Query: 171 LSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN---TVA 227
                            A D                       H+  Y C+A N   ++ 
Sbjct: 64  -------------PPFRAEDYRQEV------------------HAQVYACLARNQFGSII 92

Query: 228 SDNHSSNLRVNVPPHIGPFTFG-ELMEGVRTQVACVVQS--GDLPLSLQWYKNGLAISQP 284
           S     ++R  V  +         ++ G    + C++ S   D    + W+ +      P
Sbjct: 93  S--RDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP 150

Query: 285 DIS 287
              
Sbjct: 151 GAE 153

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  137 bits (346), Expect = 8e-37
 Identities = 46/283 (16%), Positives = 81/283 (28%), Gaps = 66/283 (23%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
                       +PG  +SL C A  NP    SW +DG                      
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT---------------Q 426

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            + IS++  ++SG+Y C A N     + +    +  +   P   K   S++ S  V   D
Sbjct: 427 ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP---KPSISSNNSKPVEDKD 483

Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
                C         T  W  NG  +                                  
Sbjct: 484 AVAFTCEP--EAQNTTYLWWVNGQSLPV-------------------------------- 509

Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS-NLRVNVPP 241
                     S  L+++    +L++  ++   +  Y C   N+V+++      L V   P
Sbjct: 510 ----------SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGP 559

Query: 242 HI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
                       + G    ++C   + +      W  NG+   
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHS-ASNPSPQYSWRINGIPQQ 601

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  131 bits (330), Expect = 1e-34
 Identities = 47/335 (14%), Positives = 98/335 (29%), Gaps = 79/335 (23%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
                  +  + + G  ++L C A  NP    SW ++G                      
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST---------------Q 248

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMR--VYDAPGQPQDVKLVTSNSRSIKVHS 120
            + I ++ V +SG Y C A N       +      VY  P +P       +++ S  V  
Sbjct: 249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP-----FITSNNSNPVED 303

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
            D   + C         T  W  N   +     + + +      +L++ +++    G Y 
Sbjct: 304 EDAVALTCEP--EIQNTTYLWWVNNQSLPVSPRLQLSNDN---RTLTLLSVTRNDVGPYE 358

Query: 181 CVASNTVASDNHSSNLRVNEY-----TSSLSIATLSTGHSGNYTCVAS------------ 223
           C   N ++ D+    +    Y     T S S      G + + +C A+            
Sbjct: 359 CGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID 418

Query: 224 ----------------------------NTVASDNHSSNLRVNVPPHIGPFTFGE----- 250
                                       N+ +  + ++   + V   +   +        
Sbjct: 419 GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKP 478

Query: 251 LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
           + +       C  ++     +  W+ NG ++    
Sbjct: 479 VEDKDAVAFTCEPEAQ--NTTYLWWVNGQSLPVSP 511

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  121 bits (306), Expect = 3e-31
 Identities = 49/334 (14%), Positives = 92/334 (27%), Gaps = 75/334 (22%)

Query: 15  QPGPPVSLKCIATGNPTPHISW----------KLDGYPLAGDRFVMGQYMSLHGDVISHV 64
             G  V L            SW          ++ GY +   +   G   S    +  + 
Sbjct: 12  AEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71

Query: 65  N--ISSVRVEDSGIYQCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           +  I ++   D+G Y          ++  +   RVY    +P       S++ S  V   
Sbjct: 72  SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKP-----SISSNNSKPVEDK 126

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
           D     C         T  W  N   +     + + +      +L++  ++   + +Y C
Sbjct: 127 DAVAFTCEPE--TQDATYLWWVNNQSLPVSPRLQLSNGN---RTLTLFNVTRNDTASYKC 181

Query: 182 VASN---TVASDN--------------HSSNLRVNEY----------------------- 201
              N      SD+                 N                             
Sbjct: 182 ETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG 241

Query: 202 -----TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV-----PPHIGPFTFGEL 251
                T  L I  ++  +SG+YTC A N+    N ++   + V      P I       +
Sbjct: 242 TFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPV 301

Query: 252 MEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
            +     + C         +  W+ N  ++    
Sbjct: 302 EDEDAVALTCEP--EIQNTTYLWWVNNQSLPVSP 333

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  120 bits (303), Expect = 7e-31
 Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 27/189 (14%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           + ++    V+  C      T    W ++G  L        +    +G+    + + +V  
Sbjct: 477 KPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVS----PRLQLSNGN--RTLTLFNVTR 529

Query: 72  EDSGIYQCTATNRVGSQTH-SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
            D+  Y C   N V +       + V   P           +       SG    + C  
Sbjct: 530 NDARAYVCGIQNSVSANRSDPVTLDVLYGP------DTPIISPPDSSYLSGANLNLSCHS 583

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
              +P    SW  NG+P             ++T  L IA ++  ++G Y C  SN     
Sbjct: 584 A-SNPSPQYSWRINGIPQ------------QHTQVLFIAKITPNNNGTYACFVSNLATGR 630

Query: 191 NHSSNLRVN 199
           N+S    + 
Sbjct: 631 NNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  120 bits (301), Expect = 1e-30
 Identities = 52/326 (15%), Positives = 96/326 (29%), Gaps = 86/326 (26%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           + ++    V+  C           W ++   L          +S     ++   + +V  
Sbjct: 121 KPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVS---PRLQLSNGNRTLT---LFNVTR 173

Query: 72  EDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
            D+  Y+C   N V + ++ S  + V   P  P      T +  +    SG+   + C  
Sbjct: 174 NDTASYKCETQNPVSARRSDSVILNVLYGPDAP------TISPLNTSYRSGENLNLSCHA 227

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
              +PP   SW  NG    S            T  L I  ++  +SG+YTC A N+    
Sbjct: 228 A-SNPPAQYSWFVNGTFQQS------------TQELFIPNITVNNSGSYTCQAHNSDTGL 274

Query: 191 NHSSNLRVNEY-------TSSLSIATLSTGHSGNYTCVA--------------------- 222
           N ++   +  Y        +S +   +    +   TC                       
Sbjct: 275 NRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPR 334

Query: 223 ---------------------------SNTVASDNHSS-NLRVNVPPHI--GPFTFGELM 252
                                       N ++ D+     L V   P       ++    
Sbjct: 335 LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYR 394

Query: 253 EGVRTQVACVVQSGDLPLSLQWYKNG 278
            GV   ++C   + + P    W  +G
Sbjct: 395 PGVNLSLSCHA-ASNPPAQYSWLIDG 419

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 72.7 bits (178), Expect = 2e-14
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 15/94 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
              I      +   G  ++L C +  NP+P  SW+++G P                    
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT---------------Q 604

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
            + I+ +   ++G Y C  +N    + +S    +
Sbjct: 605 VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 26/181 (14%), Positives = 46/181 (25%), Gaps = 31/181 (17%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           +T  S    V  G    +             SW K      +   I       Y      
Sbjct: 2   LTIESTPFNVAEGKEVLLLVHNL-PQHLFGYSWYKGERVDGNRQIIG------YVIGTQQ 54

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-A 227
           AT    +SG      +                  +SL I  +    +G YT     +   
Sbjct: 55  ATPGPAYSGREIIYPN------------------ASLLIQNIIQNDTGFYTLHVIKSDLV 96

Query: 228 SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
           ++  +   RV      P I       + +       C  ++     +  W+ N  ++   
Sbjct: 97  NEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQ--DATYLWWVNNQSLPVS 154

Query: 285 D 285
            
Sbjct: 155 P 155

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  128 bits (323), Expect = 1e-36
 Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 28/190 (14%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
            +L+   ++ T+  G PV L C   G   P I W  DG  +     +           I 
Sbjct: 3   LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQL--YIPVSEQHWIG 60

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRVYDAP---GQPQDVKLVTSNSRSIKV 118
            +++ SV   D+G Y C   +   ++ +    + V   P    +P+D+           V
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDL----------AV 110

Query: 119 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
                  + C    G P P+TI W +            I       S L++  ++   S 
Sbjct: 111 PPNAPFQLSCEAV-GPPEPVTIVWWRGTTK--------IGGPAPSPSVLNVTGVT--QST 159

Query: 178 NYTCVASNTV 187
            ++C A N  
Sbjct: 160 MFSCEAHNLK 169

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 72.5 bits (178), Expect = 1e-15
 Identities = 25/176 (14%), Positives = 47/176 (26%), Gaps = 41/176 (23%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
             + V  G    + C V  G     I W+K+G  + +                       
Sbjct: 10  VKLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQN----------------------- 45

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHS 232
                           D     +    +   LS+ ++    +G Y C   +      +  
Sbjct: 46  ---------------LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP 90

Query: 233 SNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDIS 287
             L V   P          +      Q++C       P+++ W++    I  P  S
Sbjct: 91  VWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS 146

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 14/91 (15%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
           P    +     + P  P  L C A G P P  I W      +              G   
Sbjct: 99  PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI-------------GGPAP 145

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSA 92
           S   ++   V  S ++ C A N  G  +   
Sbjct: 146 SPSVLNVTGVTQSTMFSCEAHNLKGLASSRT 176

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  126 bits (319), Expect = 5e-36
 Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 21/202 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISW-KLDGYPLAGDRFVMGQYMSLHGDV 60
            Q+     Q  +  G      C   G+     ISW   +G  L+ ++    +   +  D 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ---QRISVVWNDD 59

Query: 61  ISHV-NISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
            S    I +  ++D+GIY+C  T   G+    + +++++          +  +     + 
Sbjct: 60  DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL-------MFKNAPTPQEF 112

Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPIL--SDAEITIRSSGEYTSSLSIATLSTGHS 176
             G+ A + C V     P TI W   G  ++   D    + S+      L I  +     
Sbjct: 113 KEGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSNN----YLQIRGIKKTDE 167

Query: 177 GNYTCVASNTVASDNHSSNLRV 198
           G Y C        + +  +++V
Sbjct: 168 GTYRCEGRILARGEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 76.4 bits (188), Expect = 6e-17
 Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 11/99 (11%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLH 57
                      Q  + G    + C    +  P I WK  G  +      RF++     L 
Sbjct: 99  QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ 158

Query: 58  GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
                   I  ++  D G Y+C        + +  D++V
Sbjct: 159 --------IRGIKKTDEGTYRCEGRILARGEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 30/181 (16%), Positives = 52/181 (28%), Gaps = 44/181 (24%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPIL-SDAEITIRSSGEYTSSL 166
           V       ++  G+     C V        ISW   NG  +  +   I++  + + +S+L
Sbjct: 5   VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64

Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
           +I                N    D                        +G Y CV +   
Sbjct: 65  TI---------------YNANIDD------------------------AGIYKCVVTAED 85

Query: 227 -ASDNHSSNLRVNVPPHIG-PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
                 + N+++          T  E  EG    + C V    LP ++ W   G  +   
Sbjct: 86  GTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILK 144

Query: 285 D 285
            
Sbjct: 145 K 145

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  125 bits (316), Expect = 2e-35
 Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 33/194 (17%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
            ++      + +  G  V L C ATG+P     W      +                  S
Sbjct: 19  SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------------TS 65

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKL--------VTSNS 113
            +  ++V V+D+G Y C   N    + +  + + V D P   Q            +    
Sbjct: 66  ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
            S K+  G    +QC+   G P     W KN LP+          + E      +  +  
Sbjct: 126 TSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPL----------THETKKLYMVPYVDL 174

Query: 174 GHSGNYTCVASNTV 187
            H G Y C   N  
Sbjct: 175 EHQGTYWCHVYNDR 188

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 74.1 bits (182), Expect = 5e-16
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHV-NISSVR 70
           Q L PG  + L+C+A G+P PH  W  +  PL  +                 +  +  V 
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET--------------KKLYMVPYVD 173

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAP---GQPQDVKLVT 110
           +E  G Y C   N   SQ       + D     G P + +  T
Sbjct: 174 LEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 38/218 (17%), Positives = 55/218 (25%), Gaps = 72/218 (33%)

Query: 85  VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN 144
           +GS  H         P   +    +T N  S  V +G    + C  T G P +   W K 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSK----ITVNPESKAVLAGQFVKLCCRAT-GHPFVQYQWFKM 55

Query: 145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
              I +                                                   TS 
Sbjct: 56  NKEIPNGN-------------------------------------------------TSE 66

Query: 205 LSIATLSTGHSGNYTCVASNTVASDN-HSSNLRVNVPPHIGPFTFG-------------- 249
           L    +    +G Y C  +N    +    S L V   P     +                
Sbjct: 67  LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT 126

Query: 250 --ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
             +LM G    + CV   G      QW+KN L ++   
Sbjct: 127 SQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHET 163

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  122 bits (308), Expect = 2e-34
 Identities = 48/203 (23%), Positives = 76/203 (37%), Gaps = 25/203 (12%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRFVMGQYMSLHGDV 60
           P+++            PV+L+C  T +    +   W  +G  L   R             
Sbjct: 4   PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM-EYR--- 59

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
                I+  R EDSG Y C   + V +   +A + V  AP        +T + RS   + 
Sbjct: 60  -----INKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAP-------DITGHKRSENKNE 106

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR----SSGEYTSSLSIATLS-TGH 175
           G  A + C    G P     W K    +  +   +       + E  + L+I  L  T  
Sbjct: 107 GQDAMMYCKSV-GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED 165

Query: 176 SGNYTCVASNTVASDNHSSNLRV 198
            G Y C A+N++ S + S+ LRV
Sbjct: 166 PGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 28/177 (15%), Positives = 46/177 (25%), Gaps = 49/177 (27%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLS 167
           + ++   I   S     +QC +T      +   W KNG+ + +                 
Sbjct: 6   IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT---------------- 49

Query: 168 IATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA 227
                                        R N       I       SG Y CV  + V+
Sbjct: 50  -----------------------------RKNASNMEYRINKPRAEDSGEYHCVY-HFVS 79

Query: 228 SDNHSSNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
           +   ++ + V   P I G        EG    + C    G       W K    + +
Sbjct: 80  APKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS-VGYPHPEWMWRKKENGVFE 135

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score =  121 bits (304), Expect = 9e-34
 Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 30/207 (14%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGD-----RFVMGQYMSL 56
              +      T   G   +L+C        P + W  DG  L        +  +G+    
Sbjct: 3   SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62

Query: 57  HGDVISHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAP---GQPQDVKLVTSN 112
              V+S + I+S+++ D+G YQC       +  +    + +   P    +P+D       
Sbjct: 63  DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDR------ 116

Query: 113 SRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL 171
                V +     + C    G P P+ + WL++ +P+ +      +       SL +  L
Sbjct: 117 ----TVAANTPFNLSCQAQ-GPPEPVDLLWLQDAVPLATAPGHGPQ------RSLHVPGL 165

Query: 172 STGHSGNYTCVASNTVASDNHSSNLRV 198
           +   + +++C A N        +    
Sbjct: 166 N--KTSSFSCEAHNAKGVTTSRTATIT 190

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 71.9 bits (176), Expect = 2e-15
 Identities = 20/171 (11%), Positives = 46/171 (26%), Gaps = 33/171 (19%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
            +I    G    ++C +     P  + WL++G  +        +                
Sbjct: 10  GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPL------------- 56

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHS 232
                                        S L I +L    +G Y C+      +  +  
Sbjct: 57  ------------------GEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQP 98

Query: 233 SNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
             + +   P+         +       ++C  Q    P+ L W ++ + ++
Sbjct: 99  GYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLA 149

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  123 bits (309), Expect = 1e-33
 Identities = 42/205 (20%), Positives = 70/205 (34%), Gaps = 15/205 (7%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVI 61
            +L    +    +      ++C  T       S  + DG  L  D           G  I
Sbjct: 92  AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTF--VPNPKAGITI 149

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
            +V     R       +C A    G+  HS    +       + + +V+    S  +  G
Sbjct: 150 KNV----KRAYHRLCVRCAAQRD-GTWLHSDKFTLK-VREAIKAIPVVSVPETSHLLKKG 203

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG------EYTSSLSIATLSTGH 175
           D   V C +      +   WLK        A++   S        E   +L+I++     
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263

Query: 176 SGNYTCVASNTVASDNHSSNLRVNE 200
           SG + C A+NT  S N ++ L+V E
Sbjct: 264 SGVFMCYANNTFGSANVTTTLKVVE 288

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 96.3 bits (239), Expect = 1e-23
 Identities = 37/290 (12%), Positives = 70/290 (24%), Gaps = 73/290 (25%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           S P +     +  ++ G  +SL CI        + W    Y              +  + 
Sbjct: 11  SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFN-----------EMVENK 55

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
            +           +G Y C+ +N + S  +   + V D          +      +    
Sbjct: 56  KNEWIQEKAEATRTGTYTCSNSNGLTSSIY---VFVRDPA-------KLFLVGLPLFGKE 105

Query: 121 GDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
              A V+C +T        S ++ +G  + +D                       H    
Sbjct: 106 DSDALVRCPLT-DPQVSQYSLIECDGKSLPTDLTFVPNPKA---GITIKNVKRAYHRLCV 161

Query: 180 TCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
            C A                                 + T + S+          L+V  
Sbjct: 162 RCAAQR-------------------------------DGTWLHSDKF-------TLKVRE 183

Query: 240 PPHIGPFTFGE-----LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
                P          L +G    V C ++     ++  W K        
Sbjct: 184 AIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHI 233

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  122 bits (307), Expect = 3e-33
 Identities = 39/284 (13%), Positives = 81/284 (28%), Gaps = 59/284 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P +     +  ++PG  V+L+C++ G+    + W     P                   S
Sbjct: 5   PVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLD---------PESPGS 51

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            +   +   +++G Y+CT      + + +  + V D              ++ + V  G 
Sbjct: 52  TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPA------HSWNLLAQEVTVVEGQ 105

Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
            A + CL+T      ++S ++ G   +    +   S         I       S  Y C 
Sbjct: 106 EAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPW---RGFIIRKAKVLDSNTYVCK 162

Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
                                             + +      V       N     PP 
Sbjct: 163 TMV---------------------------NGRESTSTGIWLKV-------NRVHPEPPQ 188

Query: 243 I--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
           I   P      + G   Q+ C   + ++  ++   +    +  P
Sbjct: 189 IKLEPSKL-VRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP 231

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  114 bits (287), Expect = 2e-30
 Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 12/192 (6%)

Query: 12  QTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
            T+  G    L C+ T       +S   +G      +     Y            I   +
Sbjct: 99  VTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRK---TVYFFSPWRGFI---IRKAK 152

Query: 71  VEDSGIYQCTATNR-VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
           V DS  Y C        S +    ++V     +P  +         +    G+ A + C 
Sbjct: 153 VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQI---KLEPSKLVRIRGEAAQIVCS 209

Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSG-EYTSSLSIATLSTGHSGNYTCVASNTVA 188
            T  +    +   +    +        + +  +   +LS+  +    +G Y+CVASN V 
Sbjct: 210 ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVG 269

Query: 189 SDNHSSNLRVNE 200
           +   + N +V E
Sbjct: 270 TRTATMNFQVVE 281

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 73.1 bits (179), Expect = 4e-15
 Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 1/98 (1%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           PQ+  +  +     G    + C AT            G            +   +   + 
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLN-SDFQDNYYKKVR 245

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
            +++++V  +D+GIY C A+N VG++T + + +V ++ 
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 68.1 bits (166), Expect = 2e-13
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 5/126 (3%)

Query: 170 TLSTGHSGNYTCVASNTVA---SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
            +  G +    CV++ +V      +    L      S+L+    +  ++G Y C      
Sbjct: 15  VVEPGETVTLRCVSNGSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDP 74

Query: 227 ASDNHSSNLRVNVPPHIGPFTFGEL--MEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
            + + + +L V  P H       E+  +EG    + C++    L  S+   + G      
Sbjct: 75  MAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR 134

Query: 285 DISITL 290
                 
Sbjct: 135 KTVYFF 140

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  120 bits (302), Expect = 4e-32
 Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 22/208 (10%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKC-------IATGNPTPHISWKLDGYPLAGDRFVMGQYMS 55
                 + ++    G PV+L+C        A+ +P  +++W  +              M 
Sbjct: 19  RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE-ETRMW 77

Query: 56  LHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRS 115
                +    +     EDSG Y CT  N       S ++RV++          +   S  
Sbjct: 78  AQDGAL---WLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDA-----FLPFISYP 129

Query: 116 IKVHSGDRAGVQCLVT----KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL 171
             +       + C       +    + I W K+ L +  D E  +   G  T+ L +  +
Sbjct: 130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG--TTHLLVHDV 187

Query: 172 STGHSGNYTCVASNTVASDNHSSNLRVN 199
           +   +G Y CV +       ++    + 
Sbjct: 188 ALEDAGYYRCVLTFAHEGQQYNITRSIE 215

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  100 bits (250), Expect = 1e-24
 Identities = 37/210 (17%), Positives = 71/210 (33%), Gaps = 27/210 (12%)

Query: 11  QQTLQPGPPVSLKC-----IATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN 65
            Q L       L C              I W  D   L  D     +++S+ G   +H+ 
Sbjct: 129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN---EKFLSVRGT--THLL 183

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVK--LVTSNSRSIKVHSGDR 123
           +  V +ED+G Y+C  T     Q ++    +     + ++    ++ S  ++I    G R
Sbjct: 184 VHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSR 243

Query: 124 AGVQCLV--TKGDPPLTISWLKNGLPILSDA------------EITIRSSGEYTSSLSIA 169
             + C V    G P  T+ W       +  A            E +  +       L   
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303

Query: 170 TLSTGHSG-NYTCVASNTVASDNHSSNLRV 198
            ++      ++ CV  NT++     + ++ 
Sbjct: 304 PVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 65.5 bits (159), Expect = 2e-12
 Identities = 27/127 (21%), Positives = 39/127 (30%), Gaps = 12/127 (9%)

Query: 115 SIKVHSGDRAGVQC------LVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
                 G+   ++C      L     P + ++W KN        E   R   +   +L +
Sbjct: 27  REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQ-DGALWL 85

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIA-----TLSTGHSGNYTCVAS 223
                  SG Y C   N    D  S  LRV E T +          L+   SG   C   
Sbjct: 86  LPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDL 145

Query: 224 NTVASDN 230
           +    D 
Sbjct: 146 SEFTRDK 152

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 65.1 bits (158), Expect = 3e-12
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 13/103 (12%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKC---IATGNPTPHISWKLDGYPL-----AGDRFVMGQYM 54
           P +I      +   G  +++ C   + TG P   + W             G R   G   
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286

Query: 55  SLHGD----VISHVNISSVRVEDSGI-YQCTATNRVGSQTHSA 92
               +    +   +    V  ED  + ++C   N +  QT   
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRT 329

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  115 bits (290), Expect = 1e-31
 Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 23/197 (11%)

Query: 11  QQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLA----GDRFVMGQYMSLHGDVISHV 64
           +  ++ G  + L C    +        W L+ +P+       RFV     +L+       
Sbjct: 17  EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLY------- 69

Query: 65  NISSVRVEDSGIYQCTATNRVGSQTHSADM---RVYDAPGQPQDVKLVTSNSRSIKVHSG 121
            I++V   D G Y C  ++   +++  +                   +    + +    G
Sbjct: 70  -IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
               ++C    G+P   I W K   P+ S AEI+        + L I  +     G Y C
Sbjct: 129 QNVTLECFAL-GNPVPDIRWRKVLEPMPSTAEISTSG-----AVLKIFNIQLEDEGIYEC 182

Query: 182 VASNTVASDNHSSNLRV 198
            A N    D H + + V
Sbjct: 183 EAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 90.7 bits (225), Expect = 3e-22
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 8/95 (8%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
             ++ +F       G  V+L+C A GNP P I W+    P+     +      L      
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLK----- 168

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
              I ++++ED GIY+C A N  G   H A + V 
Sbjct: 169 ---IFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 27/186 (14%), Positives = 46/186 (24%), Gaps = 53/186 (28%)

Query: 110 TSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
                 ++V  G    + C      P  L+  WL N  P+    +     S         
Sbjct: 12  PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT------- 64

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
                                              +L IA +     GNY+C  S+   +
Sbjct: 65  ---------------------------------NGNLYIANVEASDKGNYSCFVSSPSIT 91

Query: 229 DNHSSNLRVNV----------PPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKN 277
            +  S     +          P  I   F     + G    + C    G+    ++W K 
Sbjct: 92  KSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA-LGNPVPDIRWRKV 150

Query: 278 GLAISQ 283
              +  
Sbjct: 151 LEPMPS 156

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score =  115 bits (290), Expect = 1e-31
 Identities = 40/210 (19%), Positives = 62/210 (29%), Gaps = 38/210 (18%)

Query: 17  GPPVSLKCIATGNPTP----HISWKLDG----------------------YPLAGDRFVM 50
           G    L C  T +P       I W +                        YP    R   
Sbjct: 15  GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74

Query: 51  GQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVT 110
                  GD    +N++++++ D G YQC      G       + V   P   +      
Sbjct: 75  TSNDVKSGDA--SINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTR------ 126

Query: 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT 170
                     G+   ++C   +G  PL   W K               +   +  +S+  
Sbjct: 127 -CFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT---SPVISVKN 182

Query: 171 LSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
            S+ +SG Y+C   N V SD     L V  
Sbjct: 183 ASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 74.7 bits (183), Expect = 4e-16
 Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 20/181 (11%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVT---KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSS 165
           +T+  + I+   G+ A + C  T   +   PL I WL +        ++ I  SG+    
Sbjct: 3   ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGD---- 58

Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT 225
             I               SN V S +           +S+++  L     G Y C     
Sbjct: 59  -KIYDNYYPDLKGRVHFTSNDVKSGD-----------ASINVTNLQLSDIGTYQCKVKKA 106

Query: 226 VASDNHSSNLRVNVPPHIGPFTF-GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
               N    L V V P        G    G   ++ C  + G LPL  +W K   + + P
Sbjct: 107 PGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP 166

Query: 285 D 285
            
Sbjct: 167 T 167

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 67.4 bits (164), Expect = 2e-13
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 9/96 (9%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
           P     F+  + + G    LKC    G+      W+                     ++ 
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT-------PWLAEMT 174

Query: 62  SHV-NISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
           S V ++ +   E SG Y CT  NRVGS      + V
Sbjct: 175 SPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  117 bits (295), Expect = 2e-31
 Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 16/194 (8%)

Query: 12  QTLQPGPPVSLKCIATG-NPTPHISW-KLDGYPL-AGDRFVMGQYMSLHGDVISHVNISS 68
             +       L C+ T       +S  ++ G PL     +    +            I  
Sbjct: 99  VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFT--------IHR 150

Query: 69  VRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
            +   S  YQC+A        + S  ++V      P  +   T     +    G+ A + 
Sbjct: 151 AKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPAL---TLVPAELVRIRGEAAQIV 207

Query: 128 CLVTKGDPPLTISWLKNGLPILSDAEITIRSSG-EYTSSLSIATLSTGHSGNYTCVASNT 186
           C  +  D    +    N   +    +    ++  +   +L++  +   H+GNY+CVASN 
Sbjct: 208 CSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNV 267

Query: 187 VASDNHSSNLRVNE 200
               + S   RV E
Sbjct: 268 QGKHSTSMFFRVVE 281

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  117 bits (294), Expect = 2e-31
 Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 59/284 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P +     +  ++PG  V+L+C+  G+    + W     P          +        S
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP---------HWTLYSDGSSS 51

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
            ++ ++   +++G Y+CT        + +  + V D        +     ++ + V    
Sbjct: 52  ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPA------RPWNVLAQEVVVFEDQ 105

Query: 123 RAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
            A + CL+T       +S ++  G P++     +           +I       S +Y C
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH----GFTIHRAKFIQSQDYQC 161

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
            A                             G     +      V          +  PP
Sbjct: 162 SALM---------------------------GGRKVMSISIRLKV-------QKVIPGPP 187

Query: 242 HI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
            +         + G   Q+ C   S D+   +    N   ++ P
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP 231

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 75.8 bits (186), Expect = 4e-16
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P L     +     G    + C A+        +          +  + Q    H +   
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN----NTKLAIPQQSDFHNNRYQ 242

Query: 63  HV---NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG 101
            V   N+  V  + +G Y C A+N  G  + S   RV ++ G
Sbjct: 243 KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG 284

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 64.2 bits (156), Expect = 5e-12
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 5/127 (3%)

Query: 170 TLSTGHSGNYTCVASNTVASDNHSS---NLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
            +  G +    CV + +V  D   S    L  +  +S LS    +  ++G Y C      
Sbjct: 15  VVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDP 74

Query: 227 ASDNHSSNLRVNVPPHIGPFTFGELM--EGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
              + + +L V  P         E++  E     + C++    L   +   +        
Sbjct: 75  LGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMR 134

Query: 285 DISITLT 291
             + + +
Sbjct: 135 HTNYSFS 141

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score =  113 bits (284), Expect = 1e-30
 Identities = 25/200 (12%), Positives = 56/200 (28%), Gaps = 18/200 (9%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSV 69
            + L+ G           +    +++  +   +  G ++ M          I  + +  +
Sbjct: 12  VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM---HIDRNTGIIEMFMEKL 68

Query: 70  RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSR-----------SIKV 118
           + ED G Y     +   +   +  +         ++ +                  S +V
Sbjct: 69  QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV 128

Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
                  ++C V        I W K+   I  D +   +       +L I   S   +G 
Sbjct: 129 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---GICTLLITEFSKKDAGI 185

Query: 179 YTCVASNTVASDNHSSNLRV 198
           Y  +  +    D     L  
Sbjct: 186 YEVILKDDRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 86.5 bits (214), Expect = 1e-20
 Identities = 19/173 (10%), Positives = 48/173 (27%), Gaps = 21/173 (12%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE-YTSSLSIATLS 172
            ++++    +        K      ++++ N   I    +  +          + +  L 
Sbjct: 10  LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQ 69

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
               G YT    +  A+++ +  L  + +                          ++   
Sbjct: 70  DEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ--------------------KEAEFQR 109

Query: 233 SNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
                   PH   +   E+       + C V +      + WYK+   IS  +
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE 162

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 64.6 bits (157), Expect = 1e-12
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 8   KFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNI 66
           +++   +     V LKC         HI W  D   ++ D             + + + I
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-----KHDFKDGICTLL-I 175

Query: 67  SSVRVEDSGIYQCTATNRVGSQTHSAD 93
           +    +D+GIY+    +  G       
Sbjct: 176 TEFSKKDAGIYEVILKDDRGKDKSRLK 202

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  112 bits (282), Expect = 2e-29
 Identities = 39/210 (18%), Positives = 67/210 (31%), Gaps = 29/210 (13%)

Query: 10  IQQTLQPGPPVSLKC------IATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISH 63
            +Q L       L C          N  P + W  D  PL  D      +  +   +I  
Sbjct: 111 FKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH---FSGVKDRLI-- 165

Query: 64  VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY---DAPGQPQDVKLVTSNSRSIKVHS 120
             + +V  +  G Y C A+     + +     +        +P    +V+  + +++V  
Sbjct: 166 --VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDL 223

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR-----------SSGEYTSSLSIA 169
           G +  + C VT G       W  NG  I  D  +                    + L+I+
Sbjct: 224 GSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNIS 282

Query: 170 TLSTGH-SGNYTCVASNTVASDNHSSNLRV 198
            + +      +TC A NT   D     L  
Sbjct: 283 EIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  111 bits (279), Expect = 4e-29
 Identities = 47/278 (16%), Positives = 73/278 (26%), Gaps = 50/278 (17%)

Query: 16  PGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDS 74
                   C    N     I+W  D              +  H + +        +VEDS
Sbjct: 19  ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVST-EQASRIHQHKEKLW---FVPAKVEDS 74

Query: 75  GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT--- 131
           G Y C   N           +  +      ++          K+      G+ C      
Sbjct: 75  GHYYCVVRNSSYCLRIKISAKFVEN---EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFF 131

Query: 132 --KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
             + +    + W K+  P+L D              L +  ++  H GNYTC AS T   
Sbjct: 132 KNENNELPKLQWYKDCKPLLLDNIHFSGVKD----RLIVMNVAEKHRGNYTCHASYTYLG 187

Query: 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI--GPFT 247
             +     +   T                                      P I      
Sbjct: 188 KQYPITRVIEFITLE------------------------------ENKPTRPVIVSPANE 217

Query: 248 FGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
             E+  G + Q+ C V +G L     W  NG  I + D
Sbjct: 218 TMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDD 254

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 75.1 bits (184), Expect = 9e-16
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 3   PQLIYKFIQQ-TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMS------ 55
           P ++    +   +  G  + L C  TG  +    WK +G  +  D  V+G+         
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268

Query: 56  --LHGDVISHVNISSVRVED-SGIYQCTATNRVGSQTHSA 92
                 +I+ +NIS +        + C A N  G      
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI 308

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  108 bits (271), Expect = 6e-28
 Identities = 44/297 (14%), Positives = 77/297 (25%), Gaps = 68/297 (22%)

Query: 11  QQTLQPGPPVSLKCIATGNPTP-----HISWKLDGYPL--------------AGDRFVMG 51
           Q     G  V+L C              ++W   G                    R    
Sbjct: 9   QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68

Query: 52  QYMSLHGDVISHVNISSVRVEDSGIYQCTA-TNRVGSQTHSADMRVYDAPGQPQDVKLVT 110
                     + + +  +RVED G Y C   T   GS++    +RV   P         T
Sbjct: 69  AARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP-------QNT 121

Query: 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT 170
           +  + +++        +C+ T G PP  I+W  +   + + +++    SG  T       
Sbjct: 122 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV------ 175

Query: 171 LSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN 230
                                          TS   +   S     N TC   +      
Sbjct: 176 -------------------------------TSLWILVPSSQVDGKNVTCKVEHESFEKP 204

Query: 231 HSSNLRVNV----PPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
               + + V       I  +     +      + C  +S   P    W      +  
Sbjct: 205 QLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP 261

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  104 bits (260), Expect = 2e-26
 Identities = 31/200 (15%), Positives = 59/200 (29%), Gaps = 19/200 (9%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
           PQ   +  +  L   P    +C++T G P   I+W  D   +     V G        V 
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT-VTVT 176

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV---YDAPGQPQDVKLVTSNSRSIKV 118
           S   +      D     C   +    +     + +   Y     P +V +   ++     
Sbjct: 177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY-----PPEVSISGYDNNWYLG 231

Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
              + A + C       P   +W     P+   A           + L I  +    +  
Sbjct: 232 --QNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ-------GAQLLIRPVDKPINTT 282

Query: 179 YTCVASNTVASDNHSSNLRV 198
             C  +N + +      ++V
Sbjct: 283 LICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 28/177 (15%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLT----ISWLKNGLPILSDAEITIRSSGEYTSSLSIA 169
             +    GD   + C +   +  +T    ++W ++G                     S+A
Sbjct: 8   TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESG------------------SMA 49

Query: 170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA-S 228
                   +Y+        +    + LR     +SL +  L     GNYTC+       S
Sbjct: 50  VFHQTQGPSYSESKRLEFVAARLGAELR----NASLRMFGLRVEDEGNYTCLFVTFPQGS 105

Query: 229 DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
            +    LRV   P          L         CV   G  P  + W+ +   +   
Sbjct: 106 RSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT 162

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score =  109 bits (273), Expect = 7e-28
 Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 23/205 (11%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
            P L  +    ++  G  V L+C   G       W L     +     + +   L    +
Sbjct: 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT---VMKSGGLPSLGL 214

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
           +  N++S    +     C A N VG    S  + V              ++ +       
Sbjct: 215 TLANVTSD--LNRKNVTCWAENDVGRAEVSVQVNVS-----------FPASVQLHTAVEM 261

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI------RSSGEYTSSLSIATLSTGH 175
               +   V  G P  ++ WL NG  +   + I         +       L +   +  +
Sbjct: 262 HHWCIPFSVD-GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVN 320

Query: 176 SGNYTCVASNTVASDNHSSNLRVNE 200
           +GNYT +A+N     + S      +
Sbjct: 321 NGNYTLLAANPFGQASASIMAAFMD 345

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 69.8 bits (170), Expect = 8e-14
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 3/102 (2%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
           +          T        +     G P P + W  +G  L    F+  +++    +  
Sbjct: 246 NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 305

Query: 62  ---SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
                + ++     ++G Y   A N  G  + S      D P
Sbjct: 306 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 53.6 bits (128), Expect = 2e-08
 Identities = 34/245 (13%), Positives = 60/245 (24%), Gaps = 59/245 (24%)

Query: 54  MSLHGDVISHVNISSVRVEDS-------------GIYQCTATNRVGSQTHSADMRVYDAP 100
            SL    +  +++  + +  +                +                 +   P
Sbjct: 93  ESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP 152

Query: 101 GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160
                V  +     +  V  GD   ++C V  G       W+   L   +    +     
Sbjct: 153 NASCGVPTLKVQVPNASVDVGDDVLLRCQVE-GRGLEQAGWILTELEQSATVMKS----- 206

Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC 220
                                           S  L +   TS L        +  N TC
Sbjct: 207 ----------------------------GGLPSLGLTLANVTSDL--------NRKNVTC 230

Query: 221 VASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLA 280
            A N V     S  + V+ P           +E     +   V     P SL+W  NG  
Sbjct: 231 WAENDVGRAEVSVQVNVSFPAS---VQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSV 286

Query: 281 ISQPD 285
           +++  
Sbjct: 287 LNETS 291

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  108 bits (270), Expect = 2e-27
 Identities = 34/276 (12%), Positives = 66/276 (23%), Gaps = 62/276 (22%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
              L  G  ++L   +    +P +  +                          +++S + 
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG--------------KTLSVSQLE 150

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVK------LVTSNSRSIKVHSGDRA 124
           ++DSG + CT            D+ V         V       +  S   +  V     +
Sbjct: 151 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210

Query: 125 GVQCLVTKGDPP----LTISWLKNGLPILS---DAEITIRSSGEYTSSLSIATLSTGHSG 177
           G      +        +T       + +     D ++ +        +L  A      SG
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270

Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSS--------------------------------L 205
           N T          +   NL V   T                                   
Sbjct: 271 NLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKRE 330

Query: 206 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
               +    +G + C+ S+   S        + V P
Sbjct: 331 KAVWVLNPEAGMWQCLLSD---SGQVLLESNIKVLP 363

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  101 bits (251), Expect = 8e-25
 Identities = 34/244 (13%), Positives = 62/244 (25%), Gaps = 40/244 (16%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKLD---------GYPLAGDRFVMGQYMSLHGDVISHVN 65
           + G  V L C A+   +    WK           G  L      +         +    N
Sbjct: 7   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66

Query: 66  ----ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
               I ++++EDS  Y C   +    Q     + V+                    +  G
Sbjct: 67  FPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTANS-----------DTHLLQG 111

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
               +           ++         +               +LS++ L    SG +TC
Sbjct: 112 QSLTLTLESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQLELQDSGTWTC 159

Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
                        ++ V  +  + SI     G    ++   + TV     S  L      
Sbjct: 160 TVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAER 219

Query: 242 HIGP 245
               
Sbjct: 220 ASSS 223

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score =  104 bits (259), Expect = 3e-27
 Identities = 42/203 (20%), Positives = 66/203 (32%), Gaps = 23/203 (11%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
           +   Q G  VSL C  TG  +P  SW+     PL G           +    S + ++ V
Sbjct: 10  RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKV--------TNEGTTSTLTMNPV 61

Query: 70  RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
              +   Y CTAT           + +Y  P  P+          S  + +G    V+C 
Sbjct: 62  SFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPE-------IHLSGPLEAGKPITVKCS 114

Query: 130 VTKGDPP--LTISWLKNGLPILSDA---EITIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184
           V    P   L I  LK    + S     +   +S    +  ++   +         C A 
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAK 174

Query: 185 NTVASDNHSSNLRVNEYTSSLSI 207
             +  D   S   V +    L +
Sbjct: 175 LHI--DEMDSVPTVRQAVKELQV 195

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 52.5 bits (125), Expect = 2e-08
 Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 8/111 (7%)

Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
              GD   + C  T G      SW       L+       +    TS+L++  +S G+  
Sbjct: 13  AQIGDSVSLTCSTT-GCESPFFSWRTQIDSPLNGKVTNEGT----TSTLTMNPVSFGNEH 67

Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSSLSI---ATLSTGHSGNYTCVASNT 225
           +Y C A+           + +  +     I     L  G      C  ++ 
Sbjct: 68  SYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADV 118

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 49.0 bits (116), Expect = 3e-07
 Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 14/133 (10%)

Query: 163 TSSLSIATLSTGHSGNYTCVAS---------NTVASDNHSSNLRVNEYTSSLSIATLSTG 213
           T+  S      G S + TC  +          T      +  +     TS+L++  +S G
Sbjct: 5   TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64

Query: 214 HSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF-GELMEGVRTQVACVVQSGDLP--- 269
           +  +Y C A+           + +   P        G L  G    V C V +   P   
Sbjct: 65  NEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSV-ADVYPFDR 123

Query: 270 LSLQWYKNGLAIS 282
           L +   K    + 
Sbjct: 124 LEIDLLKGDHLMK 136

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  104 bits (261), Expect = 2e-26
 Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 26/195 (13%)

Query: 22  LKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81
           +      +  P I+W +  Y +     V+ + M+L              + ++G Y C  
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLS--------FLIALISNNGNYTCVV 196

Query: 82  T----NRVGSQTHSADMRVYDAPGQPQDVKLVT-SNSRSIKVHSGDRAGVQCLVT---KG 133
           T     R    T +  ++V  +P       + + ++    +   G+   + C V      
Sbjct: 197 TYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLM 256

Query: 134 DPPLTISWLKNGLPILSD---------AEITIRSSGEYTSSLSIATLSTGH-SGNYTCVA 183
           D    + W  +G                  +       T  LSI  +++     +Y C A
Sbjct: 257 DSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA 316

Query: 184 SNTVASDNHSSNLRV 198
            +       ++ ++ 
Sbjct: 317 RSAKGEVAKAAKVKQ 331

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  103 bits (257), Expect = 1e-25
 Identities = 42/300 (14%), Positives = 73/300 (24%), Gaps = 65/300 (21%)

Query: 17  GPPVSLKCI-----------ATGNPTPHISWKLDGYPLAGDRFVMGQY----MSLHGDVI 61
             P  +KC               +    + W         +  +  +     +S   DV+
Sbjct: 22  DEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVL 81

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
                    + D+G Y C   N       +  + V     +                   
Sbjct: 82  ---WFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQ---KDSCFNSPMKLPVHKLYIEY 135

Query: 122 DRAGVQCLVT----KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
               + C             TI+W      I +   +          +LS       ++G
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG-----MNLSFLIALISNNG 190

Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237
           NYTCV +                            G + + T   +  V     ++    
Sbjct: 191 NYTCVVTYPEN------------------------GRTFHLTRTLTVKVVGSPKNA---- 222

Query: 238 NVPPHIGPF---TFGELMEGVRTQVACVVQ---SGDLPLSLQWYKNGLAISQPDISITLT 291
            VPP I         E   G    + C V      D    + W  +G       I +T+ 
Sbjct: 223 -VPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTIN 281

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  103 bits (257), Expect = 7e-26
 Identities = 38/295 (12%), Positives = 64/295 (21%), Gaps = 71/295 (24%)

Query: 12  QTLQPGPPVSLKCIATGNPT---------PHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
                G P S KC    +             ++W+  G               +    + 
Sbjct: 39  DMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLN------RRVKNGDLW 92

Query: 63  HVNISSVRVEDSG-IYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
              I++    DS   Y CT T + G          +   P            +  +  H 
Sbjct: 93  ---IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPP-------SCIPETYELGTHD 142

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
                + C +        I+W KN   ++ D     +S      +L I       SG Y 
Sbjct: 143 KYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ----NLIIHNPELEDSGRYD 198

Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
           C          +   +                                      L V   
Sbjct: 199 CYVHYDDVRIKNDIVVSR---------------------------------CKILTVIPS 225

Query: 241 PHIGPFTFG----ELMEGVRTQVACVVQSG---DLPLSLQWYKNGLAISQPDISI 288
                         +  G    + C   S       + + W      I   D  +
Sbjct: 226 QDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGV 280

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  101 bits (253), Expect = 3e-25
 Identities = 39/207 (18%), Positives = 64/207 (30%), Gaps = 18/207 (8%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKC-IATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
           P  I +  +        + L C I       +I+W  +   L  D    G   S  G  +
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID----GTKYSQSGQNL 184

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP--GQPQDVKLVTSNSRSIKVH 119
               I +  +EDSG Y C          +   +           QD +        I V 
Sbjct: 185 I---IHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVT 241

Query: 120 SGDRAGVQCLVT---KGDPPLTISWLKNGLPIL----SDAEITIRSSGEYTSSLSIATLS 172
            G+ A + C           + I W      I+        I   S G   ++L    ++
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT 301

Query: 173 TGHSGN-YTCVASNTVASDNHSSNLRV 198
             + GN YTC   N       ++ + +
Sbjct: 302 EEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 57.9 bits (139), Expect = 7e-10
 Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 5/104 (4%)

Query: 189 SDNHSSNLRVNEYTSSLSIATLSTGHSGN-YTCVASNTVASDNHSS-NLRVNVPPHIGPF 246
                 N RV      L IA  ++  S   Y C  +              +  PP   P 
Sbjct: 77  KTRRPLNRRVKN--GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPE 134

Query: 247 TF-GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
           T+     +     + C +       ++ WYKN   +       +
Sbjct: 135 TYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYS 178

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 97.8 bits (243), Expect = 4e-25
 Identities = 37/198 (18%), Positives = 60/198 (30%), Gaps = 31/198 (15%)

Query: 10  IQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRFVMGQYMSLHGDVISHVNIS 67
                  G  + L C    + T      W   G  L  D     +               
Sbjct: 6   FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKT-----------EFK 54

Query: 68  SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
               +  G Y C           +A+++++  P        V +   S  ++ G+ A + 
Sbjct: 55  VDSDDQWGEYSCVFLPEPMG---TANIQLHGPP-------RVKAVKSSEHINEGETAMLV 104

Query: 128 CLVTKGDPPLTISWLKNG------LPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNYT 180
           C      P    +W K        L   S++   + SS    S L I  L+     G Y 
Sbjct: 105 CKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGR-SELHIENLNMEADPGQYR 163

Query: 181 CVASNTVASDNHSSNLRV 198
           C  +++  SD     LRV
Sbjct: 164 CNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 66.6 bits (162), Expect = 2e-13
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISW--KLDGYPLAGDRFVMGQYMSLHGD 59
           P++      + +  G    L C +   P     +W    D    A       ++      
Sbjct: 84  PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143

Query: 60  VISHVNISSVRVE-DSGIYQCTATNRVGSQTHSADMRV 96
             S ++I ++ +E D G Y+C  T+  GS      +RV
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 53.1 bits (127), Expect = 8e-09
 Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 9/107 (8%)

Query: 118 VHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
              G +  + C +      +T   WLK G+ +        +              S    
Sbjct: 10  EDLGSKILLTCSLNDSATEVTGHRWLKGGVVL--------KEDALPGQKTEFKVDSDDQW 61

Query: 177 GNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS 223
           G Y+CV         +          +  S   ++ G +    C + 
Sbjct: 62  GEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSE 108

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 98.1 bits (244), Expect = 2e-24
 Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 31/200 (15%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRFVMGQYMSLHGD 59
               L+ +   +    G P++L+C A  +    ++ +  +G       +           
Sbjct: 81  HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN---------- 130

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
             S++ I    +  +G Y C+   +    +    + V +    P     V + S +  + 
Sbjct: 131 --SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAP-----VLNASVTSPLL 183

Query: 120 SGDRAGVQCLVT----KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
            G+   + C       +    L  S+      +              +S   I T     
Sbjct: 184 EGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTL---------RGRNTSSEYQILTARRED 234

Query: 176 SGNYTCVASNTVASDNHSSN 195
           SG Y C A+    +    S 
Sbjct: 235 SGLYWCEAATEDGNVLKRSP 254

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 93.1 bits (231), Expect = 2e-22
 Identities = 39/288 (13%), Positives = 70/288 (24%), Gaps = 80/288 (27%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
            ++     V+L C     P      W L+G                         I+S  
Sbjct: 11  VSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST--------------PSYRITSAS 56

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
           V DSG Y+C       S      + ++           +     S     G+   ++C  
Sbjct: 57  VNDSGEYRCQRGLSGRSD--PIQLEIHRGW--------LLLQVSSRVFTEGEPLALRCHA 106

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
            K      + + +NG                                             
Sbjct: 107 WKDKLVYNVLYYRNGKAF------------------------------------------ 124

Query: 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFT--- 247
                 +   + S+L+I   +  H+G Y C         +   ++ V             
Sbjct: 125 ------KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV 178

Query: 248 FGELMEGVRTQVACVV----QSGDLPLSLQWYKNGLAISQPDISITLT 291
              L+EG    ++C      Q   L L   +Y     +   + S    
Sbjct: 179 TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQ 226

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 93.2 bits (232), Expect = 3e-24
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDV 60
          P ++     QTL       LKC ATG+P P ISW  +G+   G   R  + +  +L    
Sbjct: 9  PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ--- 65

Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDA 99
               I ++R+ D+G Y C AT+  G  + SA + V ++
Sbjct: 66 -----IKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 68.6 bits (168), Expect = 5e-15
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 6/88 (6%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLS 172
            +  +     A ++C  T GDP   ISWLK G          TI+  G    +L I  L 
Sbjct: 16  ANQTLAVDGTALLKCKAT-GDPLPVISWLKEGFTFPGRDPRATIQEQG----TLQIKNLR 70

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNE 200
              +G YTCVA+++    + S+ L V E
Sbjct: 71  ISDTGTYTCVATSSSGETSWSAVLDVTE 98

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 95.3 bits (237), Expect = 3e-24
 Identities = 24/193 (12%), Positives = 57/193 (29%), Gaps = 34/193 (17%)

Query: 17  GPPVSLKC--IATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN-----ISSV 69
           G  ++L        +    I W+         +F   +      D           I  +
Sbjct: 14  GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73

Query: 70  RVEDSGIYQCTATNRVGSQTHSADM--RVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
           + +D  IY+ +  +  G          ++ +   +P+    ++    +  +         
Sbjct: 74  KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK----ISWTCINTTLT-------- 121

Query: 128 CLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
           C V  G  P  ++  ++G  +     +                 +T  S  + C A N V
Sbjct: 122 CEVMNGTDP-ELNLYQDGKHLKLSQRVITHK------------WTTSLSAKFKCTAGNKV 168

Query: 188 ASDNHSSNLRVNE 200
           + ++    +   E
Sbjct: 169 SKESSVEPVSCPE 181

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 22/158 (13%), Positives = 36/158 (22%), Gaps = 50/158 (31%)

Query: 131 TKGDPPLTISWLKNG----LPILSDAEITIRSSGEYT----SSLSIATLSTGHSGNYTCV 182
              D    I W K      +      + T +    Y      +L I  L T     Y   
Sbjct: 25  QMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVS 84

Query: 183 ASNTVASDNHSSNLRVNEY----------------------------------------T 202
             +T   +       +                                           +
Sbjct: 85  IYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLS 144

Query: 203 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
             +     +T  S  + C A N V+ +  SS   V+ P
Sbjct: 145 QRVITHKWTTSLSAKFKCTAGNKVSKE--SSVEPVSCP 180

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 8/121 (6%)

Query: 175 HSGNYTCVASNTVASDNHSSNLRVNEYTS-SLSIATLSTGHSGNYTCVASNTVASDNHSS 233
            + +   +A      +          + + +L I  L T     Y     +T   +    
Sbjct: 37  KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK 96

Query: 234 NLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNG--LAISQPDISITL 290
              + +   +  P         + T + C V +G  P  L  Y++G  L +SQ  I+   
Sbjct: 97  IFDLKIQERVSKPKIS---WTCINTTLTCEVMNGTDP-ELNLYQDGKHLKLSQRVITHKW 152

Query: 291 T 291
           T
Sbjct: 153 T 153

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 98.7 bits (245), Expect = 4e-24
 Identities = 26/190 (13%), Positives = 51/190 (26%), Gaps = 15/190 (7%)

Query: 12  QTLQPGPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
           +  Q    +   C  A G P   +SW+      A  + +     ++   VIS   +   R
Sbjct: 145 KKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT--VISRYRLVPSR 202

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
                   C     +     S  + V   P      ++                 + C  
Sbjct: 203 EAHQQSLACIVNYHMDRFKESLTLNVQYEP------EVTIEGFDGNWYLQRMDVKLTCKA 256

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
               P     W      +    E          +      ++   +G Y C A+N + + 
Sbjct: 257 DANPPATEYHWTTLNGSLPKGVEAQ------NRTLFFKGPINYSLAGTYICEATNPIGTR 310

Query: 191 NHSSNLRVNE 200
           +    + + E
Sbjct: 311 SGQVEVNITE 320

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 94.0 bits (233), Expect = 2e-22
 Identities = 39/298 (13%), Positives = 75/298 (25%), Gaps = 61/298 (20%)

Query: 11  QQTLQPGPPVSLKCIATGNPTP----HISWKLDGYPLAGDRFVMGQYMSLH--------- 57
                 G  V L C             ++W+        +  +    M +          
Sbjct: 23  SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERV 82

Query: 58  -----GDVISHVNISSVRVEDSGIYQCTA-TNRVGSQTHSADMRVYDAPGQPQDVKLVTS 111
                      + +S + +ED G+Y C   T   G++    ++ V   P     ++   +
Sbjct: 83  EFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW--IEGTQA 140

Query: 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL 171
             R+ K          C    G PP  +SW           EI    +G  T        
Sbjct: 141 VLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIR-NPNGTVTV------- 192

Query: 172 STGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 231
                                          S   +      H  +  C+ +  +     
Sbjct: 193 ------------------------------ISRYRLVPSREAHQQSLACIVNYHMDRFKE 222

Query: 232 SSNLRVNVPP--HIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDIS 287
           S  L V   P   I  F     ++ +  ++ C   +        W     ++ +   +
Sbjct: 223 SLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA 280

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 64.8 bits (157), Expect = 3e-12
 Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 10/91 (10%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
                    V L C A  NP      W      L        +         +      +
Sbjct: 241 GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNR---------TLFFKGPI 291

Query: 70  RVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
               +G Y C ATN +G+++   ++ + +A 
Sbjct: 292 NYSLAGTYICEATNPIGTRSGQVEVNITEAA 322

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 49.0 bits (116), Expect = 7e-07
 Identities = 25/182 (13%), Positives = 45/182 (24%), Gaps = 32/182 (17%)

Query: 113 SRSIKVHSGDRAGVQCLVTKGDPP---LTISWLKNGLPILSDAEITIRSSGEYTSSLSIA 169
           + S+    G    + C      P      ++W K+      +  I   S G         
Sbjct: 21  NDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV-------- 72

Query: 170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC-VASNTVAS 228
                         S           LR +    ++ ++ L     G Y C  A+    +
Sbjct: 73  --------------SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGN 118

Query: 229 DNHSSNLRVNVPPHIGPF------TFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
                NL V   P              +  +       C   +G  P  + W       +
Sbjct: 119 RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA 178

Query: 283 QP 284
           + 
Sbjct: 179 EY 180

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 97.5 bits (242), Expect = 7e-24
 Identities = 26/190 (13%), Positives = 49/190 (25%), Gaps = 23/190 (12%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
            L     +++ C  T  P   ++       +                V          + 
Sbjct: 106 FLTEITEITIPCRVTD-PQLVVTLHEKKGDV-------------ALPVPYDHQRGFSGIF 151

Query: 73  DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTK 132
           +   Y C  T         A                V+ N+    V  G+   + C+V  
Sbjct: 152 EDRSYICKTTIGDREVDSDAYYVYRLQVSSIN----VSVNAVQTVVRQGENITLMCIVI- 206

Query: 133 GDPPLTISWLKNG----LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188
           G+  +   W          +    +  +       S L I +     SG YTC  + +V 
Sbjct: 207 GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVN 266

Query: 189 SDNHSSNLRV 198
                  + +
Sbjct: 267 DHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 88.6 bits (219), Expect = 1e-20
 Identities = 28/284 (9%), Positives = 67/284 (23%), Gaps = 67/284 (23%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
           +  L       L C  +      + W+        +        +  G   S + ++++ 
Sbjct: 9   ELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAK-----AQDGTFSSVLTLTNLT 59

Query: 71  VEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
             D+G Y CT  +  G        + ++  P          +    I +       + C 
Sbjct: 60  GLDTGEYFCTHNDSRGLETDERKRLYIF-VPDPTVGFLPNDAEELFIFLTEITEITIPCR 118

Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
           VT  DP L ++  +    +                                         
Sbjct: 119 VT--DPQLVVTLHEKKGDVAL--------------------------------------- 137

Query: 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG 249
                                      +Y C  +      +  +     +       +  
Sbjct: 138 ----------PVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN 187

Query: 250 ----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
                + +G    + C+V  G+  ++ +W        +    +T
Sbjct: 188 AVQTVVRQGENITLMCIV-IGNEVVNFEWTYPRKESGRLVEPVT 230

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 68.2 bits (166), Expect = 2e-13
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 1/96 (1%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
             +    +Q  ++ G  ++L CI  GN   +  W             V    + +   + 
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR 241

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
           S ++I S  +EDSG Y C  T  V        + + 
Sbjct: 242 SILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 94.3 bits (234), Expect = 1e-23
 Identities = 26/197 (13%), Positives = 51/197 (25%), Gaps = 40/197 (20%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHGDVISHVN------ 65
           + G  V L C A+   +    WK             F+      L+    S  +      
Sbjct: 8   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67

Query: 66  ----ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
               I ++++EDS  Y C   ++         + V+                    +  G
Sbjct: 68  FPLIIKNLKIEDSDTYICEVEDQKEE----VQLLVFGLTANS-----------DTHLLQG 112

Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
               +           ++         +               +LS++ L    SG +TC
Sbjct: 113 QSLTLTLESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQLELQDSGTWTC 160

Query: 182 VASNTVASDNHSSNLRV 198
                        ++ V
Sbjct: 161 TVLQNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 65.8 bits (160), Expect = 3e-13
 Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 16/90 (17%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
             L  G  ++L   +    +P +  +   G  + G +                +++S + 
Sbjct: 107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK---------------TLSVSQLE 151

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
           ++DSG + CT            D+ V    
Sbjct: 152 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 19/172 (11%), Positives = 42/172 (24%), Gaps = 34/172 (19%)

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNG-LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
           GD   + C  +     +   W  +  + IL +    +       +  + +  S    GN+
Sbjct: 10  GDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68

Query: 180 TCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
             +  N    D                        S  Y C   +            +  
Sbjct: 69  PLIIKNLKIED------------------------SDTYICEVEDQKEEV-QLLVFGLTA 103

Query: 240 PPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
                      L++G    +           S+Q         Q   +++++
Sbjct: 104 NSDT------HLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQGGKTLSVS 148

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 94.2 bits (233), Expect = 2e-23
 Identities = 40/199 (20%), Positives = 56/199 (28%), Gaps = 38/199 (19%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDS 74
           Q    V L C        +I+W  DG  +               +     N+ S   +  
Sbjct: 16  QEDGSVLLTC---DAEAKNITWFKDGKMI-----------GFLTEDKKKWNLGSNAKDPR 61

Query: 75  GIYQCTATNRVGSQTH------SADMRVYDA-------------PGQPQDVKLVTSNSRS 115
           G+YQC  +              SAD    DA              G   + ++       
Sbjct: 62  GMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP 121

Query: 116 IKVH-SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
            KV  SG    + C      P   I W  N   I  D +     S E   SL   +    
Sbjct: 122 YKVSISGTTVILTCPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFS-ELE 177

Query: 175 HSGNYTCVASNTVASDNHS 193
            SG Y C    +   D + 
Sbjct: 178 QSGYYVCYPRGSKPEDANF 196

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 53.4 bits (127), Expect = 1e-08
 Identities = 26/163 (15%), Positives = 41/163 (25%), Gaps = 26/163 (15%)

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
                + C          I+W K+G          I    E     ++ + +    G Y 
Sbjct: 18  DGSVLLTC----DAEAKNITWFKDGKM--------IGFLTEDKKKWNLGSNAKDPRGMYQ 65

Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
           C  S      N S  L+V     S   A        +     +    SD +         
Sbjct: 66  CKGSQ-----NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEE------M 114

Query: 241 PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
             I    +   + G    + C    G     + W  N   I  
Sbjct: 115 GGITQTPYKVSISGTTVILTCPQYPGS---EILWQHNDKNIGG 154

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 89.3 bits (222), Expect = 1e-22
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P  +      T+Q G    + C  +G PTP +SW+LDG P+  D       M +  + + 
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAH---KMLVRENGVH 66

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
            + I  V   D+GIY C ATNR G  + S ++ V      P
Sbjct: 67  SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 71.2 bits (175), Expect = 6e-16
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
             + V  G    + C V+ G P   +SW  +G P+  D+   +        SL I  +++
Sbjct: 17  GDLTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS 75

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
             +G YTC+A+N    ++ S  L V    S 
Sbjct: 76  RDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 91.4 bits (226), Expect = 2e-22
 Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 16/196 (8%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
           T      V + C+ +     ++S          ++  +     +  D      I S  + 
Sbjct: 20  TENKNKTVVIPCLGS-ISNLNVSLCARY----PEKRFVPDGNRISWDSKKGFTIPSYMIS 74

Query: 73  DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT- 131
            +G+  C A     S      + V           +V S S  I++  G++  + C    
Sbjct: 75  YAGMVFCEAKINDESYQSIMYIVVVVGYRIY---DVVLSPSHGIELSVGEKLVLNCTART 131

Query: 132 KGDPPLTISWLKNGLPILSDAEI-------TIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184
           + +  +  +W            +       +     ++ S+L+I  ++    G YTC AS
Sbjct: 132 ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 191

Query: 185 NTVASDNHSSNLRVNE 200
           + + +  +S+ +RV+E
Sbjct: 192 SGLMTKKNSTFVRVHE 207

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 68.3 bits (166), Expect = 7e-14
 Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 13  TLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN----I 66
            L  G  + L C A          +W+         + V     +  G  +        I
Sbjct: 116 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 175

Query: 67  SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
             V   D G+Y C A++ + ++ +S  +RV++ P + +
Sbjct: 176 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIEGR 213

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 10/115 (8%)

Query: 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
           I  +      + CL +  +  +++         + D       S +     +I +    +
Sbjct: 19  ITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSYMISY 75

Query: 176 SGNYTCVASNTVASDNHSSNLRVNEYTSSLSI-------ATLSTGHSGNYTCVAS 223
           +G   C A     S      + V        +         LS G      C A 
Sbjct: 76  AGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 130

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 92.6 bits (229), Expect = 2e-22
 Identities = 40/260 (15%), Positives = 76/260 (29%), Gaps = 47/260 (18%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCI---ATGNPTPHISWKLDGYPLAGDRFVMGQY------ 53
           P L     Q  +  G  V + C+           + W           +V+  Y      
Sbjct: 6   PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65

Query: 54  -------MSLHGDVISH---VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
                    L GD   +   + +  V+  D GIY C    +  S      + ++  P +P
Sbjct: 66  TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEP 125

Query: 104 QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSDAEITIRSSGE 161
           +D++          V  GD   ++C +   +      ++W+ +      +  +    S  
Sbjct: 126 RDLR----------VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNM 175

Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221
            +        S G   N   +  +   +D             S+ + T+     G YTC 
Sbjct: 176 RSGKFQ----SLGRFRNRVDLTGDISRND------------GSIKLQTVKESDQGIYTCS 219

Query: 222 ASNTVASDNHSSNLRVNVPP 241
                     +  L V    
Sbjct: 220 IYVGKLESRKTIVLHVVQDE 239

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 62.6 bits (151), Expect = 1e-11
 Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 26/187 (13%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLV--TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSL 166
           +T +S  ++VH G+   + C+V  T+      + WL +     +   +    S       
Sbjct: 8   LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNL----- 62

Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
              ++ TG   N + +  +T  +D             SL +  +     G YTC      
Sbjct: 63  ---SVPTGRFQNRSHLVGDTFHND------------GSLLLQDVQKADEGIYTCEIRLKN 107

Query: 227 ASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP--LSLQWYKNGLAISQP 284
            S      + + V P         +  G  TQ+ C +QS +      + W  +  + ++ 
Sbjct: 108 ESMVMKKPVELWVLPEEPRDL--RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEE 165

Query: 285 DISITLT 291
           +  ++  
Sbjct: 166 ETVLSYD 172

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 89.5 bits (222), Expect = 4e-22
 Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 34/175 (19%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
             +     V+L C    +P    I W  +G  +                           
Sbjct: 14  INVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT--------------QPSYRFKAN 59

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
             DSG Y C       S      + V            +   +  ++   G+   ++C  
Sbjct: 60  NNDSGEYTCQTGQTSLSD--PVHLTVLFEW--------LVLQTPHLEFQEGETIMLRCHS 109

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
            K  P + +++ +NG                   + SI   +  HSG+Y C  + 
Sbjct: 110 WKDKPLVKVTFFQNGKSQ---------KFSHLDPTFSIPQANHSHSGDYHCTGNI 155

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 27/183 (14%), Positives = 44/183 (24%), Gaps = 52/183 (28%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           +      I V   D   + C   +     +I W  NG  I +                  
Sbjct: 7   LKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH----------------- 49

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
                                            T        +   SG YTC    T  S
Sbjct: 50  ---------------------------------TQPSYRFKANNNDSGEYTCQTGQTSLS 76

Query: 229 DNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISI 288
           D    +L V     +      E  EG    + C        + + +++NG +     +  
Sbjct: 77  D--PVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDP 134

Query: 289 TLT 291
           T +
Sbjct: 135 TFS 137

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 13/80 (16%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
               Q G  + L+C +  +     +++  +G                H D     +I   
Sbjct: 94  HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK----------FSHLD--PTFSIPQA 141

Query: 70  RVEDSGIYQCTATNRVGSQT 89
               SG Y CT        +
Sbjct: 142 NHSHSGDYHCTGNIGYTLFS 161

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 87.1 bits (216), Expect = 5e-22
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
            +     V  +C A GNP P + W  +G     +  + G  +      +    + SV  
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---MESVVP 74

Query: 72 EDSGIYQCTATNRVGSQTHSADMRV 96
           D G Y C   N  GS  H+  + V
Sbjct: 75 SDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 81.0 bits (200), Expect = 1e-19
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 1/96 (1%)

Query: 103 PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY 162
           P          R   V + +    +C    G+P  T+ WLKNG     +  I        
Sbjct: 5   PYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63

Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
             SL + ++     GNYTCV  N   S NH+ +L V
Sbjct: 64  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 88.0 bits (218), Expect = 2e-21
 Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 35/191 (18%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
             +  G  V+L C            W  +G                     S +NI + +
Sbjct: 14  NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN--------------SSLNIVNAK 59

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
            EDSG Y+C       S      + V+           +   + +  V  G    ++C  
Sbjct: 60  FEDSGEYKCQHQQVNES--EPVYLEVFSDW--------LLLQASAEVVMEGQPLFLRCHG 109

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
            +      + + K+G  +    E           ++SI   +   SG Y C         
Sbjct: 110 WRNWDVYKVIYYKDGEALKYWYE---------NHNISITNATVEDSGTYYCTGKVWQLDY 160

Query: 191 N-HSSNLRVNE 200
                N+ V +
Sbjct: 161 ESEPLNITVIK 171

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 56.4 bits (136), Expect = 6e-10
 Identities = 27/183 (14%), Positives = 46/183 (25%), Gaps = 52/183 (28%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           V+ N    ++  G+   + C         +  W  NG                       
Sbjct: 7   VSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS-------------------- 46

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
                                          E  SSL+I       SG Y C       S
Sbjct: 47  ------------------------------EETNSSLNIVNAKFEDSGEYKCQHQQVNES 76

Query: 229 DNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISI 288
           +     L V     +   +   +MEG    + C          + +YK+G A+     + 
Sbjct: 77  E--PVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH 134

Query: 289 TLT 291
            ++
Sbjct: 135 NIS 137

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 14/91 (15%)

Query: 12  QTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
           + +  G P+ L+C    N     + +  DG  L        +  ++         I++  
Sbjct: 95  EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK----YWYENHNIS--------ITNAT 142

Query: 71  VEDSGIYQCTATNRVGSQT-HSADMRVYDAP 100
           VEDSG Y CT             ++ V  AP
Sbjct: 143 VEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 85.9 bits (213), Expect = 2e-21
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQ-YMSLHGDV 60
           P +      QT   G  + + C A+GNP P I W  D   L      V+     +L    
Sbjct: 11  PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLT--- 67

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
                I  VR ED G+Y C A + +G     A   +  A  + 
Sbjct: 68  -----IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 74.3 bits (183), Expect = 4e-17
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
            +     G+   V C  + G+PP  I W K+   ++ D+ I ++       +L+I  +  
Sbjct: 18  ENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLKDGN---RNLTIRRVRK 73

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
              G YTC A + +      +   +  
Sbjct: 74  EDEGLYTCQACSVLGCAKVEAFFIIEG 100

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 85.2 bits (211), Expect = 5e-21
 Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 15/114 (13%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDV 60
           P +    + QT+       L C+ATG+P P I W+ DG  ++    R    +   L    
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQ--- 65

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG-----QPQDVKLV 109
                I   ++ D+G Y C A+   G  T SA + V +        +P D  L+
Sbjct: 66  -----IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLI 114

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 67.5 bits (165), Expect = 2e-14
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL-SDAEITIRSSGEYTSSLSIATLS 172
            +  V       + C+ T G P  TI W K+G+ +   D+ I    +G     L I    
Sbjct: 16  VNQTVAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQDSRIKQLENG----VLQIRYAK 70

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTS 203
            G +G YTC+AS        S+ + V E+  
Sbjct: 71  LGDTGRYTCIASTPSGEATWSAYIEVQEFGV 101

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 87.4 bits (216), Expect = 5e-21
 Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 21/189 (11%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYM---SLHGDVISHVN----ISSV 69
           G  VSL+C         +           +           +L  + +        I SV
Sbjct: 17  GSSVSLECDFDRRECTELEGIRASLQKVEN--DTSLQSERATLLEEQLPLGKALFHIPSV 74

Query: 70  RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
           +V DSG Y+C              ++V  +  +          +R ++V       + C 
Sbjct: 75  QVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID--------TRILEVPGTGEVQLTCQ 126

Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
              G P   +SW    +P  +    T    G Y  + S+  L    S N++C+  N    
Sbjct: 127 AR-GYPLAEVSWQNVSVPANTSHIRT--PEGLYQVT-SVLRLKPQPSRNFSCMFWNAHMK 182

Query: 190 DNHSSNLRV 198
           +  S+ +  
Sbjct: 183 ELTSAIIDP 191

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 91.6 bits (226), Expect = 6e-21
 Identities = 36/275 (13%), Positives = 68/275 (24%), Gaps = 30/275 (10%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKLDGY--PLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
           +        C  +      +     G   P    R ++             V I+ +R E
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDG---SFSVVITGLRKE 300

Query: 73  DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTK 132
           D+G Y C A +    Q  S             +   +  +   +K  +G    V C   +
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQL---FVNEESTIPRSPTVVKGVAGSSVAVLCPYNR 357

Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
            +      W            + + S G   +                            
Sbjct: 358 KESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA----------------------QYEGRL 395

Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELM 252
           S        T ++ +  L++  +G Y C+ +             +   P++        +
Sbjct: 396 SLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAV 455

Query: 253 EGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDIS 287
            G   +V C            W K      Q   S
Sbjct: 456 LGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPS 490

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 84.3 bits (207), Expect = 2e-18
 Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 16/211 (7%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRFVMGQYMSLHGD 59
            P L+      T+  G  V++ C             +K  G          G     +  
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171

Query: 60  VIS-----------HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKL 108
            I             V I+ +R+ D+G Y C A +   S   +AD++V     +     L
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231

Query: 109 VTSNSR--SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY-TSS 165
             S +   ++     + A   C  + G+    +           +  I +    +  + S
Sbjct: 232 RGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFS 291

Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNL 196
           + I  L    +G Y C A +       S   
Sbjct: 292 VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQ 322

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 82.4 bits (202), Expect = 8e-18
 Identities = 27/223 (12%), Positives = 55/223 (24%), Gaps = 33/223 (14%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISW--KLDGYPLAGDRFVMGQYMSLH------------ 57
                G  V++ C      +  I +    +G        ++     +             
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400

Query: 58  -GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
            G+    V ++ +   D+G Y C        +T      +   P              ++
Sbjct: 401 PGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVP--------GNV 452

Query: 117 KVHSGDRAGVQCLVT---KGDPPLTISWLKNGLPILSDAE------ITIRSSGEYTSSLS 167
               G+   V C               W   G   L   +                 SL+
Sbjct: 453 TAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLT 512

Query: 168 IATLSTGHSGNYTCVASNTVASDNHSS-NLRVNEYTSSLSIAT 209
           +  ++    G Y C           ++  + V E  ++ S   
Sbjct: 513 LNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDV 555

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 71.6 bits (174), Expect = 4e-14
 Identities = 40/291 (13%), Positives = 82/291 (28%), Gaps = 53/291 (18%)

Query: 15  QPGPPVSLKC---IATGNPTPHISWKLDGYPLAGDRFVMGQYMSL------------HGD 59
             G  VS+ C     + N      W   G        +  +                  +
Sbjct: 13  VEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPEN 72

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
               VNI+ +  +DSG Y+C         +    + V   PG       + ++++   V 
Sbjct: 73  GTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPG-------LLNDTKVYTVD 125

Query: 120 SGDRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
            G    + C    +        + + GL  +   + +   +  YT  + +    TG    
Sbjct: 126 LGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQ--- 182

Query: 179 YTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238
                                    S+ I  L    +G Y C A +   S+  +++L+V 
Sbjct: 183 ----------------------LLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL 220

Query: 239 VPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
            P     +              C +      ++    +   +    D+ + 
Sbjct: 221 KPEPELVYED----LRGSVTFHCALGPEVANVAKFLCR-QSSGENCDVVVN 266

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 52.3 bits (124), Expect = 8e-08
 Identities = 17/147 (11%), Positives = 40/147 (27%), Gaps = 17/147 (11%)

Query: 6   IYKFIQQTLQPGPPVSLKCI----ATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHG 58
           +      T   G  + + C      +        W   G        +            
Sbjct: 446 LKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505

Query: 59  DVISHVNISSVRVEDSGIYQCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK 117
             +  + ++ V   D G Y C         +T +  + V +            + SR + 
Sbjct: 506 SRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK---------AAGSRDVS 556

Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKN 144
           +   D A  + ++  G   +    +++
Sbjct: 557 LAKADAAPDEKVLDSGFREIENKAIQD 583

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 91.1 bits (225), Expect = 6e-21
 Identities = 38/347 (10%), Positives = 79/347 (22%), Gaps = 70/347 (20%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRFVMGQYMSLHGD 59
            ++    +      G  ++L+C   G        +        L  +  V          
Sbjct: 87  ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-------GEP 139

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVK--LVTSNSRSIK 117
                 +   R      + C     +  Q                 V             
Sbjct: 140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRV 199

Query: 118 VHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
           +    +  V C +    P     +        +      T+    +  S+ +  +++   
Sbjct: 200 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAED 255

Query: 176 SGNY--TCVASNTVASDNHSSNLRVNEY-------------------------------- 201
            G    TC       S      + +  +                                
Sbjct: 256 EGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTL 315

Query: 202 ----------TSSLSIATLSTGHSGNYTCVASNTVAS----DNHSSNLRVNVPPHIGPFT 247
                      + L +      +  +++C A+  VA      N +  LRV   P +    
Sbjct: 316 NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERD 375

Query: 248 F---GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
                   E  +    C    G+    L+  K+G        S+T+T
Sbjct: 376 CPGNWTWPENSQQTPMCQAW-GNPLPELKCLKDGTFPLPIGESVTVT 421

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 90.3 bits (223), Expect = 1e-20
 Identities = 30/204 (14%), Positives = 56/204 (27%), Gaps = 40/204 (19%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           S P       +  +  G  V++KC A       ++                         
Sbjct: 282 SFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR--------------- 326

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQ----THSADMRVYDAPGQPQDVKLVTSNSRSI 116
            + + + +   ++   + C+AT  V  Q      + ++RV   P              + 
Sbjct: 327 -AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP-----RLDERDCPGNW 380

Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
                 +    C    G+P   +  LK+G   L   E                T++    
Sbjct: 381 TWPENSQQTPMCQAW-GNPLPELKCLKDGTFPLPIGESV--------------TVTRDLE 425

Query: 177 GNYTCVASNTVASDNHSSNLRVNE 200
           G Y C A +T         + V  
Sbjct: 426 GTYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 88.4 bits (218), Expect = 6e-20
 Identities = 29/227 (12%), Positives = 62/227 (27%), Gaps = 35/227 (15%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
           +  L  G  V + C  + +    +           +  +  + + L G+      +S+V+
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGI---------ETPLPKKELLLPGNNRKVYELSNVQ 58

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
             +     C +    G  T    + VY  P      + V           G    ++C V
Sbjct: 59  --EDSQPMCYSNCPDGQSTAKTFLTVYWTP------ERVELAPLPSWQPVGKNLTLRCQV 110

Query: 131 TKGDPP--LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188
             G P   LT+  L+    +  +  +   +      + ++      H  N++C     + 
Sbjct: 111 EGGAPRANLTVVLLRGEKELKREPAVGEPA----EVTTTVLVRRDHHGANFSCRTELDLR 166

Query: 189 SDNHSSNLRVNEYTSSLSIA------------TLSTGHSGNYTCVAS 223
                     +      +               L     G   C   
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 16/134 (11%), Positives = 29/134 (21%), Gaps = 9/134 (6%)

Query: 167 SIATLSTGHSGNYTCVASNTVASD-----NHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221
           S   L  G S   TC  S                  +    +       +        C 
Sbjct: 7   SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCY 66

Query: 222 ASNTVASDNHSSNLRVNVPPHIGPFTF--GELMEGVRTQVACVVQSG--DLPLSLQWYKN 277
           ++         + L V   P              G    + C V+ G     L++   + 
Sbjct: 67  SNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRG 126

Query: 278 GLAISQPDISITLT 291
              + +        
Sbjct: 127 EKELKREPAVGEPA 140

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 84.3 bits (209), Expect = 6e-21
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 8  KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISH 63
          +FIQ     ++  G    +    +G P P +SW L+G  +  D       M +    +  
Sbjct: 7  RFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLH---KMIVSEKGLHS 63

Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
          +    VR  D+G Y C A NR G  T +  + V
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 1/87 (1%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
            ++ +  G    +   V+ G P   +SW  NG  + SD    +  S +   SL    +  
Sbjct: 13  ENMSIDEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA 71

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
             +G Y CVA N       +  L V  
Sbjct: 72  SDAGAYACVAKNRAGEATFTVQLDVLA 98

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 87.2 bits (216), Expect = 8e-21
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 3/108 (2%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
                G  V++ C     P+  ISW  DG  L    +        +    S++ ++    
Sbjct: 28  VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY--SNIKIYNTPSASYLEVTPDSE 85

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
            D G Y CTA NR+G ++    +   D P  P   + V   S + +V 
Sbjct: 86  NDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQ-VEPYSSTAQVQ 132

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 81.4 bits (201), Expect = 1e-18
 Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 16/127 (12%)

Query: 75  GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD 134
             Y   ++  V   +H        AP              ++    G++  + C V    
Sbjct: 1   ATYAAASSALVPRGSHMY------AP--------KLQGPVAVYTWEGNQVNITCEVF-AY 45

Query: 135 PPLTISWLKNGLPILSDAEITIR-SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193
           P  TISW ++G  + S     I+  +    S L +   S    GNY C A N +  ++  
Sbjct: 46  PSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLE 105

Query: 194 SNLRVNE 200
             L   +
Sbjct: 106 FILVQAD 112

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 84.4 bits (209), Expect = 1e-20
 Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
             + G  ++L     G P P + W   G PL   R  +        D  +   +      
Sbjct: 35  IRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHV-----RTSDFDTVFFVRQAARS 89

Query: 73  DSGIYQCTATNRVGSQTHSADMRVYDAPG 101
           DSG Y+ +        T +  +RV +  G
Sbjct: 90  DSGEYELSVQIENMKDTATIRIRVVEKAG 118

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           ++     G++  +      G P   + W K G P+ +   + +R+S ++ +   +   + 
Sbjct: 32  QTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLDTS-RVHVRTS-DFDTVFFVRQAAR 88

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
             SG Y          D  +  +RV E
Sbjct: 89  SDSGEYELSVQIENMKDTATIRIRVVE 115

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 85.3 bits (211), Expect = 2e-20
 Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 36/185 (19%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
            ++     V+LKC    +P  +   W  +   ++                 S   I +  
Sbjct: 17  YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA--------------SSYFIDAAT 62

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
           V DSG Y+C       S      + V+      Q  + V            D   ++C  
Sbjct: 63  VNDSGEYRCQTNLSTLSD--PVQLEVHIGWLLLQAPRWV--------FKEEDPIHLRCHS 112

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
            K      +++L+NG                + S   I   +   SG+Y C       S 
Sbjct: 113 WKNTALHKVTYLQNGKDR---------KYFHHNSDFHIPKATLKDSGSYFCRGLV--GSK 161

Query: 191 NHSSN 195
           N SS 
Sbjct: 162 NVSSE 166

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 57.6 bits (139), Expect = 2e-10
 Identities = 22/183 (12%), Positives = 38/183 (20%), Gaps = 52/183 (28%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           V    +   V   D   ++C         +  W  N   I                    
Sbjct: 10  VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI-------------------- 49

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
                                         +   SS  I   +   SG Y C  + +  S
Sbjct: 50  ------------------------------SSQASSYFIDAATVNDSGEYRCQTNLSTLS 79

Query: 229 DNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISI 288
           D     L V++   +         E     + C          + + +NG        + 
Sbjct: 80  D--PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNS 137

Query: 289 TLT 291
              
Sbjct: 138 DFH 140

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 44.1 bits (104), Expect = 9e-06
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 13/90 (14%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGD 59
               L+ +  +   +   P+ L+C +  N   H +++  +G                H  
Sbjct: 87  HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY---------FHHN- 136

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQT 89
             S  +I    ++DSG Y C       + +
Sbjct: 137 --SDFHIPKATLKDSGSYFCRGLVGSKNVS 164

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 83.5 bits (207), Expect = 2e-20
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 6/103 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
           PQ+I     Q ++ G  V L    TG      +W      +   +   +      + +  
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKV-----ENSENG 62

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
           S + I + R E  G Y     N++GS+    ++ V D P  P 
Sbjct: 63  SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 105

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 78.5 bits (194), Expect = 1e-18
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
              KV +G+   +   VT G  P+T +W+K    I     + + +S E  S L+I     
Sbjct: 15  EDQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENS-ENGSKLTILAARQ 72

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
            H G YT +  N + S     NL V +
Sbjct: 73  EHCGCYTLLVENKLGSRQAQVNLTVVD 99

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 86.3 bits (213), Expect = 2e-20
 Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 30/208 (14%)

Query: 11  QQTLQPGPP-------VSLKCIATGNPTPHISWKLDGYPLAGD---RFVMGQYMSLHGDV 60
           + T++  PP       V L            +W             RFV    M+  G  
Sbjct: 1   EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60

Query: 61  ISHV---------NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTS 111
            S               + ++D G+Y    T+    +   A +R +      Q       
Sbjct: 61  YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENY-RRTQATVRFHVHQPVTQ----PFL 115

Query: 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL 171
              +  V   D   V       D    I WL N   +     +T+  +    S L I  +
Sbjct: 116 QVTNTTVKELDS--VTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNN---SILRIDPI 170

Query: 172 STGHSGNYTCVASNTVASDNHSSNLRVN 199
               +G Y C  SN V S   S++++++
Sbjct: 171 KREDAGEYQCEISNPV-SVRRSNSIKLD 197

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 50.8 bits (121), Expect = 7e-08
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSVR 70
            T++    V+L C++  +   +I W  +   L   +R  + Q  S+       + I  ++
Sbjct: 120 TTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNSI-------LRIDPIK 171

Query: 71  VEDSGIYQCTATNRVGSQT-HSADMRVYDAP 100
            ED+G YQC  +N V  +  +S  + +   P
Sbjct: 172 REDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 23/180 (12%), Positives = 49/180 (27%), Gaps = 30/180 (16%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           VT  +   +V   +   +             +W K     +       +    +  + ++
Sbjct: 2   VTIEAVPPQVAEDNNVLLLVHNLPLALG-AFAWYKGNTTAID------KEIARFVPNSNM 54

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-- 226
                 +SG    + SN                  SL    ++    G YT   ++    
Sbjct: 55  NFTGQAYSGREI-IYSNG-----------------SLLFQMITMKDMGVYTLDMTDENYR 96

Query: 227 -ASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
                   ++   V       T   + E     V     S D+  ++QW  N  ++   +
Sbjct: 97  RTQATVRFHVHQPVTQPFLQVTNTTVKEL--DSVTLTCLSNDIGANIQWLFNSQSLQLTE 154

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 86.9 bits (214), Expect = 3e-20
 Identities = 35/238 (14%), Positives = 61/238 (25%), Gaps = 51/238 (21%)

Query: 11  QQTLQPGPPVSLKC---IATGNPTPHISWKLDGYPLAGDRFVMGQY-------------- 53
           +  +  G  V L C   +A     P ISW     P    +   G Y              
Sbjct: 11  EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDS 70

Query: 54  -----------MSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR--VYDAP 100
                       S+       + ++ V  +D G Y C             D +  V    
Sbjct: 71  YKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT 130

Query: 101 GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI------------ 148
           G      +  S +  ++V  G+   + C  T       ++W                   
Sbjct: 131 GHTPSNNVHVSTAEVVQVDEGNDITMTCPCT-DCANANVTWYTGPTFFENYETGTYQPLA 189

Query: 149 --------LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
                      +EI  R+S     +L I       +G   C  +      +   +  +
Sbjct: 190 NKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 61.5 bits (148), Expect = 2e-11
 Identities = 11/113 (9%), Positives = 27/113 (23%), Gaps = 17/113 (15%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           S+   +       +  G  +++ C  T     +++W               Q ++     
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194

Query: 61  ISHVN-----------------ISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
                                 I + ++ D+G   C      G         +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 57.6 bits (138), Expect = 6e-10
 Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 26/193 (13%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSL 166
           V +    ++VH+G    + C         P  ISWLK   P  S        + +     
Sbjct: 5   VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64

Query: 167 SIATLSTGHS-GNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT 225
            + + S   S G++   AS              N    +L +  +     G Y C  +  
Sbjct: 65  FVESDSYKESFGDFLGRASVA------------NLAAPTLRLTHVHPQDGGRYWCQVAQW 112

Query: 226 VASDN---HSSNLRVNVPPHIGPFTFG-------ELMEGVRTQVACVVQSGDLPLSLQWY 275
                    + ++ + V  H              ++ EG    + C   +     ++ WY
Sbjct: 113 SIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC-TDCANANVTWY 171

Query: 276 KNGLAISQPDISI 288
                    +   
Sbjct: 172 TGPTFFENYETGT 184

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 83.1 bits (205), Expect = 4e-20
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 9/109 (8%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRF---------VMGQY 53
              +   + Q    G  V L C A G+P P I W  +G                  +  +
Sbjct: 22  AGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIH 81

Query: 54  MSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQ 102
            + H    S ++I ++  ED+G Y+C A+N       +   RV     Q
Sbjct: 82  ATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 61.6 bits (149), Expect = 4e-12
 Identities = 23/109 (21%), Positives = 33/109 (30%), Gaps = 13/109 (11%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE------------ITIRSSGE 161
            S +   G    + C    G P   I W   G                    I       
Sbjct: 29  LSQQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQH 87

Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATL 210
             S++SI TL    +G Y C ASN    ++ +   RV    +   +  L
Sbjct: 88  AASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVLVL 136

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 82.5 bits (204), Expect = 5e-20
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGD--- 59
           P+++       +  G P +L C A G PTP I W   G  +  D+     +  L      
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRVYDAP 100
               +        D G+Y C A N +G   +H A + V  A 
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE------ITIRSSGEYTSSLS 167
             + V  G+ A + C    G P  TI W K G  + +D +      + + S   +   + 
Sbjct: 17  SDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIV 75

Query: 168 IATLSTGHSGNYTCVASNTV 187
               S    G Y CVA N +
Sbjct: 76  HGRKSRPDEGVYVCVARNYL 95

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 83.4 bits (206), Expect = 6e-20
 Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 65  NISSVRVEDSGIYQCTATNRVGSQT----HSADMRVYDAPG---QPQDVKLVTSNSRSIK 117
            +S  +   S        N+V ++       A+ + +  P       D++          
Sbjct: 3   GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDME---------- 52

Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
           V  G  A   C V  G P   + W K+  P+       I    E   SL+I+ +      
Sbjct: 53  VVEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA 111

Query: 178 NYTCVASNTVASDNHSSNLRVNE 200
            YTC A N++     ++ L V  
Sbjct: 112 KYTCKAVNSLGEATCTAELLVET 134

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 81.1 bits (200), Expect = 4e-19
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P      +   +  G      C   G P P + W  D  P+   R      +    +   
Sbjct: 42  PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF---QIDYDEEGNC 98

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
            + IS V  +D   Y C A N +G  T +A++ V     + +
Sbjct: 99  SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGE 140

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 81.3 bits (201), Expect = 8e-20
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 1/87 (1%)

Query: 16  PGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSVRVEDS 74
                 +     GNP P + W  +G  L          +++ H +    + + +    ++
Sbjct: 15  SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74

Query: 75  GIYQCTATNRVGSQTHSADMRVYDAPG 101
           G Y   A N  G             PG
Sbjct: 75  GDYTLIAKNEYGKDEKQISAHFMGWPG 101

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 70.5 bits (173), Expect = 9e-16
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 5/88 (5%)

Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG----EYTSSLSIATLS 172
              S     +   V  G+P   + W  NG  +     I  +       EY   L +   +
Sbjct: 12  SPTSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPT 70

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNE 200
             ++G+YT +A N    D    +     
Sbjct: 71  HMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 86.4 bits (213), Expect = 9e-20
 Identities = 32/234 (13%), Positives = 71/234 (30%), Gaps = 46/234 (19%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH----ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNIS 67
           +    G   +L     G+         +W  D  P   +               + + ++
Sbjct: 12  RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN--------------TATLTVA 57

Query: 68  SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
               E++G Y+ T  +     +  +++ + +         +  +  +   V S     + 
Sbjct: 58  DATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELI----VNITEPQHFYVSSQTDVELH 113

Query: 128 CLVTK--GDPP-----LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
             V    G  P     L  SW K    I +            T  ++I   +   +G YT
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDVIDT------------TQDITIQEFTADKNGVYT 161

Query: 181 CVASNTVASDNHSSNLRVNEYTSS-----LSIATLSTGHSGNYTCVASNTVASD 229
                       S++ ++   T +     +   T++ G+  +   V S  +  D
Sbjct: 162 VKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGD 215

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 56.8 bits (136), Expect = 1e-09
 Identities = 28/209 (13%), Positives = 54/209 (25%), Gaps = 44/209 (21%)

Query: 12  QTLQPGPPVSLKC---IATGNPTP-----HISWKLDGYPLAGDRFVMGQYMSLHGDVISH 63
             +     V L      + G         H SW      +                    
Sbjct: 102 FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT---------------QD 146

Query: 64  VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
           + I     + +G+Y             SA  ++  A               S  V  G+ 
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVD-----QDVVESKTVALGNE 201

Query: 124 AGVQCLVT-------KGDPPLTISW----LKNGLPILSDAEITIRSSGEYTS-----SLS 167
             +  +V+        G P LTI +     + G    +     +  + E  S      L 
Sbjct: 202 ISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLF 261

Query: 168 IATLSTGHSGNYTCVASNTVASDNHSSNL 196
             + +   +  + CVA      ++ +  +
Sbjct: 262 KESATYDDTAKFWCVAKLYQQIEDETVEV 290

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 15/137 (10%), Positives = 43/137 (31%), Gaps = 17/137 (12%)

Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSS------NLRVNEYTSSLSIATLSTGHSG 216
           +   +      G     T   +      ++ +      +      T++L++A  ++ ++G
Sbjct: 6   SIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAG 65

Query: 217 NYTCVASNTVASDNHSSNLRV----NVPPHIGPFTFGELMEGVRTQVACVVQ-------S 265
           +Y     +T    +  S + +     +  +I       +      ++   V+       +
Sbjct: 66  SYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPA 125

Query: 266 GDLPLSLQWYKNGLAIS 282
            +  L   W K    I 
Sbjct: 126 DNYELHYSWSKGEDVID 142

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 80.9 bits (200), Expect = 1e-19
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
            +++ K    T+  G      C   G P P ++W   G  L    R  +           
Sbjct: 15  ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST--- 71

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
               ISSV+  D G Y     N  G Q     + +
Sbjct: 72  --FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 76.2 bits (188), Expect = 7e-18
 Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           RS+ V+ G+ A   C    G+P  T++WL+ G  + + A   + ++    S+  I+++  
Sbjct: 22  RSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKY-KSTFEISSVQA 79

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
              GNY+ V  N+         L + +
Sbjct: 80  SDEGNYSVVVENSEGKQEAEFTLTIQK 106

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 80.4 bits (199), Expect = 2e-19
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
          P      + Q+++ G  V +     G P P +SW  +  P+  D+    ++       + 
Sbjct: 6  PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQ---RRFAEEAEGGLC 62

Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
           + I +    D+G Y C A N  G++   A + V
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 70.8 bits (174), Expect = 7e-16
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
               V  G    +   V  G+P   +SWL+N  P+  D       +      L I     
Sbjct: 13  MDQSVREGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER 71

Query: 174 GHSGNYTCVASNTVASDNHSSNLRV 198
           G +G YTC A N   +    + L V
Sbjct: 72  GDAGFYTCKAVNEYGARQCEARLEV 96

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 83.2 bits (205), Expect = 2e-19
 Identities = 29/195 (14%), Positives = 50/195 (25%), Gaps = 29/195 (14%)

Query: 13  TLQPGPPVSLKCIA---TGNPTPHISWKLDG-------------YPLAGDRFVMGQYMSL 56
           T   G  V+L       +  P   +SW   G               +  +    G +   
Sbjct: 2   TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61

Query: 57  HGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
                  + +++  +   G Y C         T    + V            ++ +S   
Sbjct: 62  RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPL-------TLSVHSERS 114

Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNG----LPILSDAEITIRSSGEYTSSLSIATLS 172
           +        V C V    P   + WL        P  ++  +     G   S     +L 
Sbjct: 115 QFPDFSVLTVTCTVN-AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL-SVAVDLSLP 172

Query: 173 TGHSGNYTCVASNTV 187
                  TCV  N  
Sbjct: 173 KPWHLPVTCVGKNDK 187

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 68.5 bits (167), Expect = 4e-14
 Identities = 12/85 (14%), Positives = 20/85 (23%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
             L     +        +++ C     P PH+ W +            G  M      +S
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164

Query: 63  HVNISSVRVEDSGIYQCTATNRVGS 87
                S+         C   N    
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKEE 189

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 57.0 bits (137), Expect = 5e-10
 Identities = 24/172 (13%), Positives = 41/172 (23%), Gaps = 27/172 (15%)

Query: 116 IKVHSGDRAGVQCLVTK--GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           +    G+R  +     +    P + +SW K G          +                 
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHD-------------- 46

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
                   +            +   N  T  L +   +  H GNY C             
Sbjct: 47  -------VIFIEWPFRGFFDIHRSAN--TFFLVVTAANISHDGNYLCRMKLGETEVTKQE 97

Query: 234 NLRVNVPPHIGPF-TFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
           +L V  P  +       +  +     V C V +      +QW         P
Sbjct: 98  HLSVVKPLTLSVHSERSQFPDFSVLTVTCTV-NAFPHPHVQWLMPEGVEPAP 148

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 80.5 bits (199), Expect = 2e-19
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 6/104 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDV 60
           P  IYK   + +  G  V L+C  +  P P + WK +   +    DR  + Q        
Sbjct: 16  PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ----DNTG 71

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
              + I  V  +D+G Y  +A N  G  T +  + V   P Q  
Sbjct: 72  RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 71.7 bits (176), Expect = 6e-16
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 85  VGSQTHSADMRVYDAPG---QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISW 141
           +G   H        AP    +PQ  K          V  GD   ++C ++   PP  + W
Sbjct: 1   MGHHHHHHSHEHKRAPMFIYKPQSKK----------VLEGDSVKLECQIS-AIPPPKLFW 49

Query: 142 LKNGLPILSDAE-ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
            +N   +  + + I++        +L I  ++   +G YT  A N       ++ L V  
Sbjct: 50  KRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 80.0 bits (198), Expect = 3e-19
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 8  KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVIS 62
            +      T+           ATG P P   W  DG  +  G ++ +            
Sbjct: 8  VIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKL-----SEDKGGF 62

Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
           + I      DSG+Y CT  N  GS + S  + +
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 68.9 bits (169), Expect = 3e-15
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           +   V S   A      T G+P  T  W K+G  I    +  +         L I    T
Sbjct: 14  QDTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKLSEDKG-GFFLEIHKTDT 71

Query: 174 GHSGNYTCVASNTVASDNHSSNLRV 198
             SG YTC   N+  S + S  L +
Sbjct: 72  SDSGLYTCTVKNSAGSVSSSCKLTI 96

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 84.0 bits (207), Expect = 3e-19
 Identities = 33/203 (16%), Positives = 58/203 (28%), Gaps = 40/203 (19%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           S P       +  +  G  V++KC A           L+G P                  
Sbjct: 97  SFPAPNVILTKPEVSEGTEVTVKCEAHPRAK----VTLNGVPAQPL------------GP 140

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTH----SADMRVYDAPGQPQDVKLVTSNSRSI 116
            + + + +   ++   + C+AT  V  Q      + ++RV   P              + 
Sbjct: 141 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP-----RLDERDCPGNW 195

Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
                 +    C    G+P   +  LK+G   L   E                T++    
Sbjct: 196 TWPENSQQTPMC-QAWGNPLPELKCLKDGTFPLPIGESV--------------TVTRDLE 240

Query: 177 GNYTCVASNTVASDNHSSNLRVN 199
           G Y C A +T         + V 
Sbjct: 241 GTYLCRARSTQGEVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 75.9 bits (186), Expect = 3e-16
 Identities = 41/275 (14%), Positives = 68/275 (24%), Gaps = 72/275 (26%)

Query: 12  QTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISS 68
           + L+     ++ C   G        +   L    L          ++   D  S     S
Sbjct: 13  RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-------VTYGNDSFSAKASVS 65

Query: 69  VRVEDSG--IYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
           V  ED G     C       SQ     + +Y  P                +V  G    V
Sbjct: 66  VTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP-------NVILTKPEVSEGTEVTV 118

Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
           +C   +  P        NG+P                + L +      +  +++C A+  
Sbjct: 119 KC---EAHPR--AKVTLNGVPAQPLGP---------RAQLLLKATPEDNGRSFSCSATLE 164

Query: 187 VASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPF 246
           VA                                     +   N +  LRV   P +   
Sbjct: 165 VAGQ-----------------------------------LIHKNQTRELRVLYGPRLDER 189

Query: 247 TFGE---LMEGVRTQVACVVQSGDLPLSLQWYKNG 278
                    E  +    C    G+    L+  K+G
Sbjct: 190 DCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDG 223

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 79.3 bits (196), Expect = 5e-19
 Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 8  KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDR-FVMGQYMSLHGDVIS 62
           F        +  G    L+C   G P P I+W L+G P+   R         LH     
Sbjct: 13 SFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELH----- 67

Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
             I     ED G Y C A N +G  + SA + V+
Sbjct: 68 ---IQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           +   V  G    +QC V  G P   I+WL NG PI                 L I     
Sbjct: 19  KDCAVIEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYARSTCEAGVA----ELHIQDALP 73

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVN 199
              G YTC+A N +   + S+ + V+
Sbjct: 74  EDHGTYTCLAENALGQVSCSAWVTVH 99

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 79.0 bits (195), Expect = 6e-19
 Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSVR 70
             + PG  + L+C    +    I+W  DG  L   +R  +             V +    
Sbjct: 13  FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITG---------EEVEVQDSV 62

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
             DSG+Y C  ++  GS T    + V DA 
Sbjct: 63  PADSGLYACVTSSPSGSDTTYFSVNVSDAL 92

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 70.5 bits (173), Expect = 9e-16
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 7/91 (7%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
            S  VH GD   ++C +   D   +I+WL++G+ +       I         + +     
Sbjct: 11  ESFLVHPGDLLQLRCRLR-DDVQ-SINWLRDGVQLAESNRTRITG-----EEVEVQDSVP 63

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
             SG Y CV S+   SD    ++ V++   S
Sbjct: 64  ADSGLYACVTSSPSGSDTTYFSVNVSDALPS 94

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 81.5 bits (201), Expect = 9e-19
 Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 36/208 (17%)

Query: 12  QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
             +     V+LKC    +P      W  +   ++                 S   I +  
Sbjct: 17  YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------SSYFIDAAT 62

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
           V+DSG Y+C       S      + V+      Q  + V            D   ++C  
Sbjct: 63  VDDSGEYRCQTQLSTLSD--PVQLEVHIGWLLLQAPRWV--------FKEEDPIHLRCHS 112

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
            K      +++L+NG                + S   I   +   SG+Y C       + 
Sbjct: 113 WKNTALHKVTYLQNGKGR---------KYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNV 163

Query: 191 NHSS-NLRVNEYTSSLSI-ATLSTGHSG 216
           +  +  + + +  +  +I +    G+ G
Sbjct: 164 SSETVQITITQGLAVSTISSFFPPGYQG 191

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 2/95 (2%)

Query: 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVR 256
            ++   SS  I   +   SG Y C    +  SD     L V++   +         E   
Sbjct: 48  LISSQASSYFIDAATVDDSGEYRCQTQLSTLSD--PVQLEVHIGWLLLQAPRWVFKEEDP 105

Query: 257 TQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
             + C          + + +NG        +    
Sbjct: 106 IHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFY 140

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 13/90 (14%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGD 59
               L+ +  +   +   P+ L+C +  N   H +++  +G                H +
Sbjct: 87  HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK----------YFHHN 136

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQT 89
             S   I    ++DSG Y C       + +
Sbjct: 137 --SDFYIPKATLKDSGSYFCRGLVGSKNVS 164

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 78.3 bits (193), Expect = 9e-19
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVR 70
            + PG  + L+C         I+W  DG  L   +R  +             V +    
Sbjct: 19 LLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG---------EEVEVRDSI 68

Query: 71 VEDSGIYQCTATNRVGSQTHSADMRV 96
            DSG+Y C  ++  GS T    + V
Sbjct: 69 PADSGLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 70.6 bits (173), Expect = 8e-16
 Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 100 PGQPQDVK--LVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR 157
           P  P+  +   V     S+ VH GD   ++C +   D   +I+WL++G+ ++      I 
Sbjct: 1   PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLR--DDVQSINWLRDGVQLVESNRTRIT 58

Query: 158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
                   + +       SG Y CV S+   SD    ++ V
Sbjct: 59  GE-----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 78.2 bits (193), Expect = 1e-18
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 13/94 (13%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           QL+ +     + PG  V+L C     P+P I W  DG PL      +     L      
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP-----LPPSPVLI----- 60

Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
             +  +  +D G Y C AT+       S  + +
Sbjct: 61 ---LPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 65.1 bits (159), Expect = 8e-14
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 11/86 (12%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
               V  G    + C V    P   I W+K+G+P+       +  S      L +  +  
Sbjct: 18  EGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPL------PLPPSP----VLILPEIGP 66

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVN 199
              G Y+CVA+++      S  + ++
Sbjct: 67  QDQGTYSCVATHSSHGPQESRAVSIS 92

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 77.7 bits (192), Expect = 2e-18
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P++  +     +  G            PT  + W  +G  L        +    +   + 
Sbjct: 9   PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES----SKIHYTNTSGVL 64

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDA 99
            + I     +DSG Y+   TN  G  +  A + V   
Sbjct: 65  TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 68.1 bits (167), Expect = 8e-15
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           RS +V  G        V    P   + W  NG+ +   ++I   ++     +L I    T
Sbjct: 16  RSHRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKIHYTNTSG-VLTLEILDCHT 73

Query: 174 GHSGNYTCVASNTVASDNHSSNLRV 198
             SG Y  V +N     +  + L V
Sbjct: 74  DDSGTYRAVCTNYKGEASDYATLDV 98

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 77.9 bits (192), Expect = 3e-18
 Identities = 16/88 (18%), Positives = 33/88 (37%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
             ++ +  GNP P + W  +G PL   + +  +Y          +  +     ++G Y  
Sbjct: 23  HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL 82

Query: 80  TATNRVGSQTHSADMRVYDAPGQPQDVK 107
            A N +G+   + +      P    +V 
Sbjct: 83  IAKNPLGTANQTINGHFLKEPFPVDEVS 110

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 69.1 bits (169), Expect = 5e-15
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE---YTSSLSIATLSTGHSGNYTCV 182
           ++ +V  G+PP T+ WL NG P+     I +    E       L     +  ++GNYT +
Sbjct: 25  IEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLI 83

Query: 183 ASNTVASDNHSSNLRVNE 200
           A N + + N + N    +
Sbjct: 84  AKNPLGTANQTINGHFLK 101

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 77.0 bits (190), Expect = 4e-18
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDV 60
           P    K     +  G PV+  C   GNP P I W  DG  ++   D + + +      D 
Sbjct: 9   PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR----DLDG 64

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
              ++ ++  ++D G Y   A N  G  + +  + V      P
Sbjct: 65  TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLS 172
           +  K+  G      C V  G+P   I W K+G  I   ++  TI+   + T SL     +
Sbjct: 16  KHYKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAST 74

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
               GNYT +A+N     + +  L V    S 
Sbjct: 75  LDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 76.5 bits (189), Expect = 4e-18
 Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 8  KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVIS 62
          K  +    QT+  G     +    G P P   W  +G  +   DR     Y     D + 
Sbjct: 7  KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRI----YWYWPEDNVC 62

Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
           + I  V  EDS      A N  G  +  A + V
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           +S  V  G  A  +  V  G P     W KNG+ I     I      +    L I  ++ 
Sbjct: 13  QSQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 71

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
             S +    A N     +  + L V  
Sbjct: 72  EDSASIMVKAINIAGETSSHAFLLVQA 98

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 79.9 bits (196), Expect = 7e-18
 Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 36/222 (16%)

Query: 16  PGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN--------- 65
            G  V L C  TG    + + W L     A  R    +       V  H           
Sbjct: 14  RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73

Query: 66  -------ISSVRVEDSGIYQCTA-TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK 117
                  ++  +V D   Y C       G+   +A + V+  P   +   +  +      
Sbjct: 74  DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATE---VSPNKGTLSV 130

Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR----------SSGEYT--SS 165
           +    +    C    G+P   I+W +NG  +    E+             +SG  +  S+
Sbjct: 131 MEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTST 190

Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSI 207
           L +         ++ C A  ++    H    R++  T  L++
Sbjct: 191 LYLRLRKDDRDASFHCAAHYSLPEGRHG---RLDSPTFHLTL 229

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 25/176 (14%), Positives = 50/176 (28%), Gaps = 26/176 (14%)

Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
            ++V  G    + C  T       + W                      +   +A+    
Sbjct: 9   LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRS---------------GARPRLASAEMQ 53

Query: 175 HSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC-VASNTVASDNHSS 233
            S     +      S  +  +         L +A    G   +Y C V +    +   ++
Sbjct: 54  GSELQVTMHDTRGRSPPYQLD-----SQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATA 108

Query: 234 NLRVNVPPHI-----GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
            L V   P          T   + +  +    C  ++G+    + WY+NG  +  P
Sbjct: 109 RLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVP 164

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 75.8 bits (187), Expect = 7e-18
 Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 13/92 (14%)

Query: 1  SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
          S  Q+  +   Q L PG  + L+C+A G+P PH  W  +  PL  +              
Sbjct: 2  SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYM--- 53

Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSA 92
               +  V +E  G Y C   N   SQ    
Sbjct: 54 -----VPYVDLEHQGTYWCHVYNDRDSQDSKK 80

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 62.0 bits (151), Expect = 8e-13
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 12/93 (12%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           +     S K+  G    +QC+   G P     W KN LP+          + E      +
Sbjct: 6   ICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPL----------THETKKLYMV 54

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSS-NLRVNE 200
             +   H G Y C   N   S +     + ++E
Sbjct: 55  PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 74.3 bits (183), Expect = 3e-17
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 12/98 (12%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHG 58
          P+++    +  ++ G   +L+    G P P  +W +           ++       S+  
Sbjct: 3  PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF- 61

Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
                   S +  DSG Y+    N +G      ++ V
Sbjct: 62 -------FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 73.5 bits (181), Expect = 5e-17
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           + + SR IK+ +G    ++     G P  T +W           E+ + +    T+S+  
Sbjct: 5   ILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKS-STTSIFF 62

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
            +     SGNY     N +  D     + V
Sbjct: 63  PSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 76.2 bits (187), Expect = 5e-17
 Identities = 22/185 (11%), Positives = 55/185 (29%), Gaps = 30/185 (16%)

Query: 21  SLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN-----ISSVRVEDSG 75
           ++      +    + W+     +A   F       L       +      I ++  +DSG
Sbjct: 17  NIPNFQMTDDIDEVRWERGSTLVA--EFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSG 74

Query: 76  IYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP 135
            Y  T  +  G++  +  + +       + +     ++ ++           C V +G  
Sbjct: 75  TYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATL----------TCEVLEGTD 124

Query: 136 PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195
              +   +    + S  + T+                T     + C A N V+ ++    
Sbjct: 125 V-ELKLYQGKEHLRSLRQKTMSYQ------------WTNLRAPFKCKAVNRVSQESEMEV 171

Query: 196 LRVNE 200
           +   E
Sbjct: 172 VNCPE 176

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 46.5 bits (110), Expect = 1e-06
 Identities = 21/157 (13%), Positives = 34/157 (21%), Gaps = 48/157 (30%)

Query: 130 VTKGDPPLTISWLKNGLPILS--DAEITIRSSGEYT----SSLSIATLSTGHSGNYTCVA 183
               D    + W +    +            SG +       L I  L+   SG Y    
Sbjct: 21  FQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTV 80

Query: 184 SNTVASDNHSSNLRVNEY----------------------------------------TS 203
            +T  +   +  L +                                             
Sbjct: 81  YSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR 140

Query: 204 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
             +++   T     + C A N V     S    VN P
Sbjct: 141 QKTMSYQWTNLRAPFKCKAVNRV--SQESEMEVVNCP 175

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 7/116 (6%)

Query: 180 TCVASNTVASDNHSSNLRVNEYTS-SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238
           T VA           +       +  L I  L+   SG Y     +T  +   +  L + 
Sbjct: 37  TLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLR 96

Query: 239 VPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI---SQPDISITLT 291
           +   +         E     + C V  G   + L+ Y+    +    Q  +S   T
Sbjct: 97  ILEMVSKPMI--YWECSNATLTCEVLEGT-DVELKLYQGKEHLRSLRQKTMSYQWT 149

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 1/91 (1%)

Query: 108 LVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLS 167
           +V+          G      C +   D    ++W      + +  +  I       + L 
Sbjct: 3   MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGV-AILY 61

Query: 168 IATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
           +  ++    G Y C   N    D+  + L V
Sbjct: 62  VKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 13/90 (14%)

Query: 12 QTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRFVM---GQYMSLHGDVISHVNI 66
             + G  V   C          ++W      L   +++ +        L+        +
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY--------V 62

Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
            +   D G Y+C   N  G  +  A++ V
Sbjct: 63 KDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 72.7 bits (178), Expect = 3e-16
 Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 5/119 (4%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFV---MGQYMSLH 57
           SH     +    T        +     G P P + W  +G  L    F+     +  +  
Sbjct: 1   SHMPASVQL--HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58

Query: 58  GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
                 + ++     ++G Y   A N  G  + S      D P +      +   + + 
Sbjct: 59  TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTS 117

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 66.5 bits (162), Expect = 4e-14
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 114 RSIKVHSGDRAGVQCL--VTKGDPPLTISWLKNGLPILSDAEITIR------SSGEYTSS 165
            S+++H+       C+     G P  ++ WL NG  +   + I         +       
Sbjct: 5   ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64

Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
           L +   +  ++GNYT +A+N     + S      +
Sbjct: 65  LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 99

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 73.1 bits (179), Expect = 7e-16
 Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 16/133 (12%)

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
           +S++++ED+G Y+   + +  ++  S  +R+       Q    VT++S+    +      
Sbjct: 74  LSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQ----VTNHSQLF-QNMTCELH 128

Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
           + C V   D  ++  W   G  + S   +T+                     +YTC+A N
Sbjct: 129 LTCSVEDADDNVSFRWEALGNTLSSQPNLTVSW-----------DPRISSEQDYTCIAEN 177

Query: 186 TVASDNHSSNLRV 198
            V++ + S + + 
Sbjct: 178 AVSNLSFSVSAQK 190

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 29/187 (15%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           ++     +    G+   +      G+    I+WL N                      S+
Sbjct: 1   MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNET--------------------SL 40

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
           A +    + +     +N          L   + + SL ++ L    +G+Y    S   ++
Sbjct: 41  AFIVPHETKSPEIHVTN----PKQGKRLNFTQ-SYSLQLSNLKMEDTGSYRAQISTKTSA 95

Query: 229 DNHSSNLRVNVP---PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNG-LAISQP 284
              S  LR+        +   +           + C V+  D  +S +W   G    SQP
Sbjct: 96  KLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP 155

Query: 285 DISITLT 291
           +++++  
Sbjct: 156 NLTVSWD 162

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 68.2 bits (167), Expect = 7e-15
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 5/87 (5%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           ++++V  G+    +C+++         W   G  + S +       G     L +   + 
Sbjct: 16  KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGR-KYILVVREAAP 74

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
             +G          +     ++L V E
Sbjct: 75  SDAGEVVFSVRGLTS----KASLIVRE 97

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.9 bits (148), Expect = 4e-12
 Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 17/108 (15%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKC-IATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSL 56
           H  +  +     +  G   S +C ++  + +    W + G  + +  RF     G+   L
Sbjct: 8   HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYIL 67

Query: 57  HGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
                    +      D+G    +        T  A + V +  G   
Sbjct: 68  V--------VREAAPSDAGEVVFSV----RGLTSKASLIVRERSGPSS 103

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 67.9 bits (166), Expect = 7e-15
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 12/93 (12%)

Query: 6  IYKFIQQTLQPGPPVSLKCIA-TGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVISH 63
          + +   Q+++PG  V+  C A + +P   + W +L    L            L       
Sbjct: 14 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG--ILT------ 65

Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
            I +V+  D+G Y CT +N       +A + V
Sbjct: 66 --IRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 62.9 bits (153), Expect = 5e-13
 Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 8/102 (7%)

Query: 99  APGQPQD--VKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI 156
           AP       + +     RS  V  G      C      P  T+ W +     L       
Sbjct: 1   APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS----- 55

Query: 157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
             + ++   L+I  +    +G Y C  SN  A D  ++ L V
Sbjct: 56  -RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 69.6 bits (170), Expect = 9e-15
 Identities = 23/190 (12%), Positives = 52/190 (27%), Gaps = 34/190 (17%)

Query: 17  GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN------ISSVR 70
              V+     +  P   + WK     +A       +  S   + +          I ++ 
Sbjct: 10  YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
             D   Y+  + N   +      + V +   +P     +     +  +         C V
Sbjct: 69  SSDEDEYEMESPNITDTMKFF--LYVLEMVSKPM----IYWECSNATLT--------CEV 114

Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
            +G     +   +    + S  + T+                T     + C A N V+ +
Sbjct: 115 LEGTDV-ELKLYQGKEHLRSLRQKTMSYQ------------WTNLRAPFKCKAVNRVSQE 161

Query: 191 NHSSNLRVNE 200
           +    +   E
Sbjct: 162 SEMEVVNCPE 171

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 13/108 (12%)

Query: 184 SNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP--- 240
           S   A  +  + + ++  + SL+I  L++     Y   + N   +      L V      
Sbjct: 41  SEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKF--FLYVLEMVSK 98

Query: 241 PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISI 288
           P I         E     + C V  G   + L+ Y+    +       
Sbjct: 99  PMI-------YWECSNATLTCEVLEGT-DVELKLYQGKEHLRSLRQKT 138

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 68.4 bits (166), Expect = 4e-14
 Identities = 31/195 (15%), Positives = 53/195 (27%), Gaps = 44/195 (22%)

Query: 16  PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG 75
            G  V L C    +   ++ W+ +G  L        +++ L              VEDSG
Sbjct: 13  SGTSVELTCPL--DSDENLKWEKNGQELPQKH---DKHLVLQ---------DFSEVEDSG 58

Query: 76  IYQCTATNRVGSQTHSADMRVYDAPGQPQD------------------VKLVTSNSRSIK 117
            Y C       +       RV  A    +D                       +  +   
Sbjct: 59  YYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDG 118

Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
                   + C    G    TI WLK+G          I       ++ ++   +    G
Sbjct: 119 SRGDGSVLLTC----GLTDKTIKWLKDGSI--------ISPLNATKNTWNLGNNAKDPRG 166

Query: 178 NYTCVASNTVASDNH 192
            Y C  +   ++   
Sbjct: 167 TYQCQGAKETSNPLQ 181

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 23/167 (13%), Positives = 44/167 (26%), Gaps = 31/167 (18%)

Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGN 178
           SG    + C +   D    + W KNG  +            ++   L +   S    SG 
Sbjct: 13  SGTSVELTCPL---DSDENLKWEKNGQEL----------PQKHDKHLVLQDFSEVEDSGY 59

Query: 179 YTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238
           Y C    +  +       RV     +   A        +      +      +   +  +
Sbjct: 60  YVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGS 119

Query: 239 VPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
                               + C +        ++W K+G  IS  +
Sbjct: 120 -------------RGDGSVLLTCGLTDKT----IKWLKDGSIISPLN 149

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 14/79 (17%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
              +    V L C  T      I W  DG  ++        +           N+ +   
Sbjct: 117 DGSRGDGSVLLTCGLTDKT---IKWLKDGSIISPLNATKNTW-----------NLGNNAK 162

Query: 72  EDSGIYQCTATNRVGSQTH 90
           +  G YQC       +   
Sbjct: 163 DPRGTYQCQGAKETSNPLQ 181

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 66.8 bits (163), Expect = 4e-14
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 14/119 (11%)

Query: 86  GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145
           GS   S  + V   P        + S++++     G++  ++C +    PP  I+W    
Sbjct: 1   GSSGSSGTLTVNGPP--------IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKE 52

Query: 146 LPILSDAE-----ITIRSSGEYTSSLSIATLSTGH-SGNYTCVASNTVASDNHSSNLRV 198
             + S         TI +     S+L+I+ +        Y C A N+  SD     L+ 
Sbjct: 53  NVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL---AGDRFVMGQYMSLHG 58
           P +I     Q    G    +KC     P P  I+W      L      R+ +    +  G
Sbjct: 14  PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73

Query: 59  DVISHVNISSVRVED-SGIYQCTATNRVGSQTHSADMRV 96
            VIS + IS++   D   IY CTA N  GS T    ++ 
Sbjct: 74  -VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 21/55 (38%)

Query: 228 SDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
           S   S  L VN PP I        + G + Q+ C ++S   P  + W      + 
Sbjct: 2   SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLE 56

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 68.5 bits (167), Expect = 4e-14
 Identities = 29/204 (14%), Positives = 64/204 (31%), Gaps = 31/204 (15%)

Query: 17  GPPVSLKCIATGNPTPH----ISWKLDG----YPLAGDRFVMGQY-----MSLHGDVISH 63
               +L C    +        I W+ +       ++GD  +  +Y       +  ++   
Sbjct: 9   KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL--S 66

Query: 64  VNISSVRVEDSGIYQCTATNRVGSQTHSA-----DMRVYDAPGQPQDVKLVTSNSRSIKV 118
           + I ++R  D G Y+C                   + V      P             ++
Sbjct: 67  IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPS--------ISDFEI 118

Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR--SSGEYTSSLSIATLSTGHS 176
            + +   + C  + G P   +SWL+NG  + +      +   +  Y  S S    +   +
Sbjct: 119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVS-SKLDFNMTTN 177

Query: 177 GNYTCVASNTVASDNHSSNLRVNE 200
            ++ C+        N + N    +
Sbjct: 178 HSFMCLIKYGHLRVNQTFNWNTAK 201

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 66.6 bits (162), Expect = 5e-14
 Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 8/114 (7%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISW----KLDGYPLAGDRFVMGQY 53
           S    I K    T++ G  ++             P I W     +D    AG    + + 
Sbjct: 6   SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65

Query: 54  MSLHGDVISHV-NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDV 106
              H  V +    I   +   +G Y+C  T +    + S D+ V+++ G   ++
Sbjct: 66  FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 60.8 bits (147), Expect = 5e-12
 Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 12/98 (12%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPL---TISWLKNGLPILSD--------AEITIRSSGEY 162
           +   V  G+       V   +  L   TI W K     L+          E   R S  Y
Sbjct: 15  QGGTVKVGEDITFIAKVK-AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 73

Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
           T  + I       +GNY C  +     D+ S +L V+E
Sbjct: 74  TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 65.9 bits (160), Expect = 7e-14
 Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISW------KLDGYPLAGDRFVMGQYMSLHGDVISHV 64
              L  G  + L C A       I +          +    +R +  Q  S     +S +
Sbjct: 17  GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 76

Query: 65  NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
            I  V   D G+Y C A++ + ++ +S  +RV++ P
Sbjct: 77  TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 56.3 bits (135), Expect = 3e-10
 Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 104 QDVKLVTSNSRSIKVHSGDRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITIRSSG-- 160
            DV L  S+   I++  G++  + C    + +  +  +W            +        
Sbjct: 8   YDVVLSPSHG--IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 65

Query: 161 -----EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
                ++ S+L+I  ++    G YTC AS+ + +  +S+ +RV+E
Sbjct: 66  GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 67.8 bits (165), Expect = 7e-14
 Identities = 21/183 (11%), Positives = 49/183 (26%), Gaps = 20/183 (10%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
              ++ G  + L C                         + +  +  G       +  +R
Sbjct: 11  VAFVERGGSLWLNCSTNCPRPERGGL----------ETSLRRNGTQRGLRWLARQLVDIR 60

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
            E      C       +      +R +  P + +    +        V  G+   + C V
Sbjct: 61  -EPETQPVCFFRCARRTLQARGLIRTFQRPDRVE----LMPLPPWQPV--GENFTLSCRV 113

Query: 131 TKGDPP--LTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
               P   LT++ L+    ++          +     + ++      H  N++C A   +
Sbjct: 114 PGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDL 173

Query: 188 ASD 190
              
Sbjct: 174 RPH 176

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 69.5 bits (169), Expect = 7e-14
 Identities = 33/227 (14%), Positives = 62/227 (27%), Gaps = 35/227 (15%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
           +  L  G  V + C  + +    +  +    PL            L     +        
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPKLLGIE---TPLPKK--------ELLLPGNNRKVYELSN 56

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
           V++     C +    G  T    + VY     P+ V+L    S       G    ++C V
Sbjct: 57  VQEDSQPMCYSNCPDGQSTAKTFLTVYWT---PERVELAPLPSW---QPVGKNLTLRCQV 110

Query: 131 TKGDPP--LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188
             G P   LT+  L+    +  +  +   +      + ++      H  N++C     + 
Sbjct: 111 EGGAPRANLTVVLLRGEKELKREPAVGEPA----EVTTTVLVRRDHHGANFSCRTELDLR 166

Query: 189 SDNH--------SSNLRVNEY----TSSLSIATLSTGHSGNYTCVAS 223
                          L+           +S   L     G   C   
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 52.6 bits (125), Expect = 4e-08
 Identities = 23/209 (11%), Positives = 53/209 (25%), Gaps = 22/209 (10%)

Query: 12  QTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISS 68
                G  ++L+C   G        +        L  +  V                +  
Sbjct: 96  SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-------GEPAEVTTTVLV 148

Query: 69  VRVEDSGIYQCTATNRVGSQ-----THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
            R      + C     +  Q      +++          P     + S      +    +
Sbjct: 149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRV---LEVDTQ 205

Query: 124 AGVQCLVTKGDPPLTISW-LKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
             V C +    P       L  G   L+    T+    +  S+ +  +++    G     
Sbjct: 206 GTVVCSLDGLFPVSEAQVHLALGDQRLN---PTVTYGNDSFSAKASVSVTAEDEGTQRLT 262

Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLS 211
            +  + + +  +   V  Y+       L+
Sbjct: 263 CAVILGNQSQETLQTVTIYSFPAPNVILT 291

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 64.7 bits (158), Expect = 1e-13
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
             + V + ++A  +C V+  D  +T  W KNG+ +     ITI   G     L I  +  
Sbjct: 16  ADLTVKAAEQAVFKCEVS--DEKVTGKWYKNGVEVRPSKRITISHVGR-FHKLVIDDVRP 72

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
              G+YT V      S   S+ L   E
Sbjct: 73  EDEGDYTFVPDGYALSL--SAKLNFLE 97

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 13/98 (13%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVIS 62
           + +Q     T++       KC  +        W  +G  +    R  +      H     
Sbjct: 10  EVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITI-----SHVGRFH 63

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
            + I  VR ED G Y         S   SA +   +  
Sbjct: 64  KLVIDDVRPEDEGDYTFVPDGYALSL--SAKLNFLEIK 99

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 21/102 (20%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM----GQYMSLHG 58
             I+      +Q G   + +C  +      + W LD  PL A +   +    G Y  L  
Sbjct: 15  HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLT- 73

Query: 59  DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
                  +  + ++DSG     A    G Q  SA +RV + P
Sbjct: 74  -------LRQLALKDSGTIYFEA----GDQRASAALRVTEKP 104

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 60.9 bits (148), Expect = 4e-12
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
             + V  G  A  +C ++       + W  +  P+ ++    I +       L++  L+ 
Sbjct: 21  EDVDVQEGSSATFRCRIS-PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLAL 79

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
             SG     A +  A    S+ LRV E
Sbjct: 80  KDSGTIYFEAGDQRA----SAALRVTE 102

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 66.9 bits (163), Expect = 3e-13
 Identities = 34/245 (13%), Positives = 72/245 (29%), Gaps = 65/245 (26%)

Query: 20  VSLKCIATGNPTP-----HISWKLDGYPL-------AGDRFVMGQY---MSLHGDVISH- 63
           ++++C              + W+++   +          +     Y     L  D +S  
Sbjct: 19  MTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLG 78

Query: 64  ---VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
              + I+ V+++D+G+Y+C   +  G+      ++V     +             +    
Sbjct: 79  NAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQ-------RILVVDPV 130

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
                + C    G P   + W  +   +LS    T  S  E                 + 
Sbjct: 131 TSEHELTCQAE-GYPKAEVIWTSSDHQVLSGKTTTTNSKRE--------------EKLFN 175

Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
                                TS+L I   +T  +  + C        +NH++ L +   
Sbjct: 176 --------------------VTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVIPEL 212

Query: 241 PHIGP 245
           P   P
Sbjct: 213 PLAHP 217

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 59.6 bits (144), Expect = 9e-11
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 10  IQQTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVISHVNIS- 67
           I           L C A G P   + W   D   L+G         S   + + +V  + 
Sbjct: 124 ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTT---NSKREEKLFNVTSTL 180

Query: 68  SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
            +    + I+ CT       + H+A++ + + P
Sbjct: 181 RINTTTNEIFYCTFRRLDPEENHTAELVIPELP 213

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 63.2 bits (154), Expect = 4e-13
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 13/104 (12%)

Query: 86  GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145
           GS   S  +         ++V+            +G  A + C V        ++W K+G
Sbjct: 1   GSSGSSGKVVFAKEQPAHREVQ----------AEAGASATLSCEVA--QAQTEVTWYKDG 48

Query: 146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
             + S +++ + + G  T  L +       +G Y+C A     S
Sbjct: 49  KKLSSSSKVRVEAVGC-TRRLVVQQAGQAEAGEYSCEAGGQQLS 91

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 17/89 (19%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGDVISHVNIS 67
             + G   +L C         ++W  DG  L +  +  +   G    L         + 
Sbjct: 21 VQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLV--------VQ 71

Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRV 96
               ++G Y C A    G Q  S  ++V
Sbjct: 72 QAGQAEAGEYSCEA----GGQQLSFRLQV 96

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 63.1 bits (153), Expect = 5e-13
 Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 12/98 (12%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPL---TISWLKNG---LPILSDAEITIRSSGE-----Y 162
           +  +V  G        V  G   L    + W K     L       + +  S +     Y
Sbjct: 12  QDGEVTVGGSITFSARV-AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70

Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
              L I       +G+Y C  S     D  + NL V+E
Sbjct: 71  LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 59.6 bits (144), Expect = 9e-12
 Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 12/102 (11%)

Query: 9   FIQ----QTLQPGPPVSLKCIATGNP---TPHISW----KLDGYPLAGDRFVMGQYMSLH 57
           F+       +  G  ++      G      P + W     +D     G    +       
Sbjct: 7   FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66

Query: 58  GDVISHV-NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD 98
             V     +I+  +   +G Y+C  + +      + ++ V++
Sbjct: 67  SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 62.4 bits (152), Expect = 8e-13
 Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           RS++V +G  A  +    +    + + W + G  I +  +  + + G    +L++  +  
Sbjct: 16  RSVEVAAGSPAVFEAETER--AGVKVRWQRGGSDISASNKYGLATEGT-RHTLTVREVGP 72

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
              G+Y  +A ++        +L+V E
Sbjct: 73  ADQGSYAVIAGSSKV----KFDLKVIE 95

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 21/96 (21%)

Query: 9  FIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGDV 60
          F +      +  G P   +          + W+  G  + A +++ +   G   +L    
Sbjct: 11 FSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLT--- 66

Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
               +  V   D G Y   A    GS     D++V
Sbjct: 67 -----VREVGPADQGSYAVIA----GSSKVKFDLKV 93

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 101 GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160
           G    ++ V      ++V  G+ A  +  ++  +P +   W   G P+ +  +  I   G
Sbjct: 1   GAMALIE-VEKPLYGVEVFVGETAHFEIELS--EPDVHGQWKLKGQPLAASPDCEIIEDG 57

Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
           +    L +     G +G  +  A+NT +    ++NL+V E
Sbjct: 58  K-KHILILHNCQLGMTGEVSFQAANTKS----AANLKVKE 92

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 17/88 (19%)

Query: 8  KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGD 59
          +  +      +  G     +   +  P  H  WKL G PL A     +   G+   L   
Sbjct: 7  EVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILI-- 63

Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGS 87
                + + ++  +G     A N   +
Sbjct: 64 ------LHNCQLGMTGEVSFQAANTKSA 85

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
               V  G+   ++C +++   P  + WLK+   I    +  +   G   + L I   S 
Sbjct: 16  EDQWVAPGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVCEGT-MAMLVIRGASL 72

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
             +G YTC    + +    +++L V E
Sbjct: 73  KDAGEYTCEVEASKS----TASLHVEE 95

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 60.8 bits (148), Expect = 3e-12
 Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 17/105 (16%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHG 58
             +I     Q + PG  V L+C  +   TP + W  D   +    ++ +   G    L  
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLV- 66

Query: 59  DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
                  I    ++D+G Y C           +A + V +    P
Sbjct: 67  -------IRGASLKDAGEYTCEVEASKS----TASLHVEEKASGP 100

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 2e-12
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
           Q  +  G  V   C A G+P P I W      L   +      +++  D    + +   +
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAK--SNGRLTVFPD--GTLEVRYAQ 449

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRV 96
           V+D+G Y C A N  G+ +  A + V
Sbjct: 450 VQDNGTYLCIAANAGGNDSMPAHLHV 475

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 107 KLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NG--LPILSDAEITIRSSGEYT 163
           ++    ++ + V  G      C    GDPP  I WL      +   S+  +T+   G   
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVFPDG--- 441

Query: 164 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
            +L +       +G Y C+A+N   +D+  ++L V 
Sbjct: 442 -TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 15/101 (14%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVIS 62
           +F +      +  G   +L+C+ +    P + W      L  GD++ + Q  ++      
Sbjct: 10  RFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAML----- 63

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
            + + ++R +DSG Y C+     G QT SA + V   P  P
Sbjct: 64  ELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGP 100

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           + ++V  G  A ++C+++       + W      +    + ++R  G     L +  L  
Sbjct: 16  KDLEVLEGGAATLRCVLS--SVAAPVKWCYGNNVLRPGDKYSLRQEGA-MLELVVRNLRP 72

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
             SG Y+C   +       S+ L V  
Sbjct: 73  QDSGRYSCSFGDQTT----SATLTVTA 95

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 20/102 (19%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGD 59
           K +     QT+  G  + LKC  + N      W  +G P+   DR  +   G+   L   
Sbjct: 9   KILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLV-- 64

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG 101
                 I++   ED G Y         + T  A + V   P 
Sbjct: 65  ------IANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
               V+ G    ++C ++  + P    W KNGLP+     + +   G     L IA   T
Sbjct: 15  TDQTVNLGKEICLKCEIS-ENIPGK--WTKNGLPVQESDRLKVVQKGR-IHKLVIANALT 70

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
              G+Y         +    + + V    SS
Sbjct: 71  EDEGDYVFAPDAYNVTL--PAKVHVISGPSS 99

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 12/112 (10%)

Query: 89  THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 148
            H + M    +               + +V  G +  +   +   D    + WLKNG  I
Sbjct: 5   HHHSSMDEKKST------AFQKKLEPAYQVSKGHKIRLTVELA--DHDAEVKWLKNGQEI 56

Query: 149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
                  I  S     +L+I+  S      Y CV          S+ L V E
Sbjct: 57  QMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC----STELFVKE 104

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 19/90 (21%)

Query: 8  KFIQ-----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL--AGDRFVM---GQYMSLH 57
           F +       +  G  + L      +    + W  +G  +  +G +++    G   +L 
Sbjct: 17 AFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLT 75

Query: 58 GDVISHVNISSVRVEDSGIYQCTATNRVGS 87
                  IS   + D   YQC       S
Sbjct: 76 --------ISQCSLADDAAYQCVVGGEKCS 97

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 66.0 bits (160), Expect = 3e-12
 Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 19/181 (10%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
           +++       P  +  W + G P     +               + IS+       +   
Sbjct: 94  LNVYVKVNNGPLGNPIWNISGDP--TRTWNRA-----------ELAISTFWPNFYQVIFE 140

Query: 80  TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTI 139
             T+         +++V   P       L   N   ++V++G  A  QC    G      
Sbjct: 141 VITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQN---VEVNAGQFATFQCSAI-GRTVAGD 196

Query: 140 SWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR 197
                G  +      EI + SS  + +S ++   +   +G Y C+          +    
Sbjct: 197 RLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAEL 256

Query: 198 V 198
           V
Sbjct: 257 V 257

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 64.0 bits (155), Expect = 1e-11
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 2/120 (1%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           +      +     +  G   + +C A G         L G  +        +  S     
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS-SRRF 221

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHS-ADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
           I+  N+ +    D+G Y+C      G    + A++ V + P      +L +  +  + + 
Sbjct: 222 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQ 281

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 63.0 bits (153), Expect = 3e-12
 Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 26/133 (19%)

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
           I +V  ED G Y     +          M VY+   +P     +     +  +       
Sbjct: 73  IYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEMVSKPM----IYWECSNATL------- 120

Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
             C V +G     +   +    + S  + T+                T     + C A N
Sbjct: 121 -TCEVLEGTDV-ELKLYQGKEHLRSLRQKTMSYQ------------WTNLRAPFKCKAVN 166

Query: 186 TVASDNHSSNLRV 198
            V+ ++    +  
Sbjct: 167 RVSQESEMEVVNC 179

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 15/72 (20%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
            +L C         +        L                 +    +S         ++C
Sbjct: 118 ATLTCEVLEGTDVELKLYQGKEHLR---------------SLRQKTMSYQWTNLRAPFKC 162

Query: 80  TATNRVGSQTHS 91
            A NRV  ++  
Sbjct: 163 KAVNRVSQESEM 174

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 25/188 (13%), Positives = 50/188 (26%), Gaps = 42/188 (22%)

Query: 110 TSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIA 169
             +  ++   +G    +  L         ++WL       ++ +I               
Sbjct: 3   DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHT-----TNQKILEYFPNG-------- 49

Query: 170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD 229
                           TV        + +++   +L I  +S    G+Y     +    D
Sbjct: 50  --------------KKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHE-TED 94

Query: 230 NHSSNLRVNVP---PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNG---LAISQ 283
                + V      P I         E     + C V  G     L+ Y+      ++ Q
Sbjct: 95  QWKITMEVYEMVSKPMI-------YWECSNATLTCEVLEGTDV-ELKLYQGKEHLRSLRQ 146

Query: 284 PDISITLT 291
             +S   T
Sbjct: 147 KTMSYQWT 154

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.5 bits (157), Expect = 6e-12
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 11/104 (10%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISH---VNIS 67
                 G  ++++C         +        +             +G V      +   
Sbjct: 255 AWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQ--------GSNGSVSVRNGDLFFK 306

Query: 68  SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTS 111
            V+VED G+Y C A     ++T S +++VY+         L  +
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAA 350

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.0 bits (148), Expect = 8e-11
 Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 3/116 (2%)

Query: 102 QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161
                        + + H GD   ++C          +    +   +LS    +  S   
Sbjct: 242 SLDFFNCSEYKESAWEAHLGDTLTIRCDTK-QQGMTKVWVSPSNEQVLSQG--SNGSVSV 298

Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGN 217
               L    +     G YTC A     ++  S  L+V  +T      TL+      
Sbjct: 299 RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPW 354

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 6e-12
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 4/103 (3%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
             P ++       +  G    LKC A+      +SW      +        +   L    
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
           +   N ++V V+D+G+Y C  +N VG+ T SA + V       
Sbjct: 399 L---NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           +      + V  G  A ++C         ++SW+     +++     +R +     +L+ 
Sbjct: 344 IVEPPADLNVTEGMAAELKCRA--STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNF 401

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
             ++   +G YTC+ SN+V +   S+ L V      
Sbjct: 402 TNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHH 437

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 59.7 bits (145), Expect = 8e-12
 Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
            S+   + +R  + C ++        +W K+G  +     + ++  G     L +     
Sbjct: 18  VSLTFTTSERVVLTCELS--RVDFPATWYKDGQKVEESELLVVKMDGR-KHRLILPEAKV 74

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
             SG + C      A       + V +
Sbjct: 75  QDSGEFECRTEGVSA----FFGVTVQD 97

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 11/91 (12%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSVR 70
            T      V L C  +    P  +W  DG  +   +  V+             + +   +
Sbjct: 20  LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVV-----KMDGRKHRLILPEAK 73

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPG 101
           V+DSG ++C         +    + V D  G
Sbjct: 74  VQDSGEFECRT----EGVSAFFGVTVQDPSG 100

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 62.2 bits (150), Expect = 8e-12
 Identities = 28/190 (14%), Positives = 48/190 (25%), Gaps = 36/190 (18%)

Query: 13  TLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
            +  G    L C     +    + W+     L   +   G+         S + + +  +
Sbjct: 18  AVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGR---------SVLTVRNASL 68

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
             +G   C  +    +  H+  + VY  P Q                       V C   
Sbjct: 69  SAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPE---------VACTAH 119

Query: 132 KGDPP----LTISWLKNGLPILSDAEITIRSSGE-------------YTSSLSIATLSTG 174
           K  P     L+ S L  G  +     +      E              T    +  L T 
Sbjct: 120 KVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTP 179

Query: 175 HSGNYTCVAS 184
                 C A+
Sbjct: 180 VPPALYCQAT 189

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           V      + V  G    + C +   D   ++ W      + +        S    S L++
Sbjct: 10  VEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA------VQSDTGRSVLTV 63

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSI 207
              S   +G   CV S    +  H+  L V  + + L++
Sbjct: 64  RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTV 102

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 62.8 bits (152), Expect = 8e-12
 Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 10/138 (7%)

Query: 64  VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
           + I +V   DSG Y C   +    +    +++V                   +K +    
Sbjct: 85  LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLH---------VDVKGYKDGG 135

Query: 124 AGVQCLVTKGDPPLTISWLKN-GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
             ++C  T   P   I W  N G  I +     +       +  +   +        +C 
Sbjct: 136 IHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCT 195

Query: 183 ASNTVASDNHSSNLRVNE 200
             +++     ++++ + +
Sbjct: 196 IRSSLLGLEKTASISIAD 213

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 61.3 bits (148), Expect = 1e-11
 Identities = 26/176 (14%), Positives = 60/176 (34%), Gaps = 21/176 (11%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
           +  ++P   + + C  T N                    + + +        H  +S++ 
Sbjct: 11  KLAVEPKGSLEVNCSTTCNQPEVGGL----------ETSLNKILLDEQAQWKHYLVSNI- 59

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
                + QC  T     ++ ++++ VY     P+ V L    +    V  G    ++C V
Sbjct: 60  -SHDTVLQCHFTCSGKQESMNSNVSVYQ---PPRQVILTLQPTL---VAVGKSFTIECRV 112

Query: 131 TKGDPP--LTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVA 183
              +P   LT+   +    +  +       +  E T++ +          N++C+A
Sbjct: 113 PTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLA 168

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 22/107 (20%)

Query: 7   YKFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHG 58
            KF +    +    G    L+C  +      + W      L  GDR  +   G    L  
Sbjct: 20  IKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQDGARCELQ- 76

Query: 59  DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQD 105
                  I  +  ED+G Y C      G +  SA + V   P  P  
Sbjct: 77  -------IRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPSS 112

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 59.3 bits (144), Expect = 2e-11
 Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 14/115 (12%)

Query: 86  GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145
            S   SA + V   P   +     T   R+ +   G  A ++C ++    P  + W K  
Sbjct: 5   SSGRTSAMLTVRALP--IK----FTEGLRNEEATEGATAVLRCELS-KMAP--VEWWKGH 55

Query: 146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
             +      ++R  G     L I  L    +G Y C+          S+ L V  
Sbjct: 56  ETLRDGDRHSLRQDGA-RCELQIRGLVAEDAGEYLCMCGKERT----SAMLTVRA 105

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 58.9 bits (143), Expect = 1e-11
 Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 7/86 (8%)

Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
           + +V  G R      +   DP L + W KNG  I    +      G     L I      
Sbjct: 17  AYQVDKGGRVRFVVEL--ADPKLEVKWYKNGQEIRPSTKYIFEHKGC-QRILFINNCQMT 73

Query: 175 HSGNYTCVASNTVASDNHSSNLRVNE 200
               Y   A +    +  S+ L V  
Sbjct: 74  DDSEYYVTAGD----EKCSTELFVRS 95

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 17/94 (18%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGDVISHVNI 66
              +  G  V        +P   + W  +G  +    +++    G    L         I
Sbjct: 17  AYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF--------I 67

Query: 67  SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
           ++ ++ D   Y  TA    G +  S ++ V   P
Sbjct: 68  NNCQMTDDSEYYVTA----GDEKCSTELFVRSGP 97

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 21/182 (11%)

Query: 13  TLQPGP------PVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNI 66
             +PG        V++ C  T           +  P   DR        L     +  +I
Sbjct: 9   WAEPGSVISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDR-----QNPLEPKNKARFSI 62

Query: 67  SSVRVEDSGIYQCTATNRVGSQTHSA--DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRA 124
            S+  + +G Y+C   + VG    S   ++ +  A  +P       S   S  V SG   
Sbjct: 63  PSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPT-----LSALPSPLVTSGKSV 117

Query: 125 GVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184
            + C      P  T    K           +   + ++ +   ++ +++ H G Y C +S
Sbjct: 118 TLLC--QSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSS 175

Query: 185 NT 186
           + 
Sbjct: 176 HG 177

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 1   SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           S P ++       +  G    LKC     P   + W L    +        +   L+   
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
           +   N S V + D+G+Y C  TN  G+   SA + V  A 
Sbjct: 409 L---NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           +    R + +  G  A ++C   +  P  ++ WL     +LS A    R S     +L+ 
Sbjct: 355 IMDAPRDLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNF 411

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
           + +    +G YTC+ +N   + N S+ L V+   + 
Sbjct: 412 SHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTH 447

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 4e-05
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 191 NHSSNLRVNEYTS-SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGP 245
           + S + R++     +L+ + +    +G YTC+ +N   + N S+ L V+       
Sbjct: 394 HASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 58.9 bits (142), Expect = 2e-11
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           PQ+  +   Q+   G  VS  C A  +       +W  D   L         ++   G  
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 61  ISHVN----ISSVRVEDSGIYQCTATNRVGSQT-HSADMRV 96
           +        + +V     G YQC  +N  GS     A + +
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 9/100 (9%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITI-------RSSG 160
           +T    +     G      C      D P+T +W  +   +                   
Sbjct: 13  ITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELM 72

Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDN-HSSNLRVN 199
           EYT+ L +  +     G Y CV SN   S     + L +N
Sbjct: 73  EYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           ++ +   G  A +QC ++       + W K    +      +++  G     L I  LS 
Sbjct: 16  KTKEASEGATATLQCELS---KVAPVEWKKGPETLRDGGRYSLKQDGT-RCELQIHDLSV 71

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
             +G Y+C+          S+ L V  
Sbjct: 72  ADAGEYSCMCGQERT----SATLTVRA 94

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 54.3 bits (131), Expect = 8e-10
 Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 22/101 (21%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGD 59
           +F Q    +    G   +L+C    +    + WK     L  G R+ +   G    L   
Sbjct: 10  RFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ-- 65

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
                 I  + V D+G Y C      G +  SA + V   P
Sbjct: 66  ------IHDLSVADAGEYSCMC----GQERTSATLTVRALP 96

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 110 TSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIA 169
            S    +     +R  + C +    P   + W K+G  ++    + ++        L + 
Sbjct: 17  PSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTKDGEEVVESPALLLQKEDT-VRRLVLP 73

Query: 170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
            +    SG Y C   +  A    S  + V E
Sbjct: 74  AVQLEDSGEYLCEIDDESA----SFTVTVTE 100

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 22/108 (20%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGDVISHVNIS 67
                   V L C     P   + W  DG  +      ++        L         + 
Sbjct: 23  VAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLV--------LP 73

Query: 68  SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRS 115
           +V++EDSG Y C        ++ S  + V + P     V+++ S   S
Sbjct: 74  AVQLEDSGEYLCEI----DDESASFTVTVTEPP-----VRIIYSGPSS 112

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 62.5 bits (152), Expect = 3e-11
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 2   HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
            P+ I K     +  G   +  C    +  P ++W  D   L        +YM  +    
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV----KYMKRYNGND 537

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
             + I+ V+ +D G Y   A N  G++     + V
Sbjct: 538 YGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 59.1 bits (143), Expect = 5e-10
 Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 8/124 (6%)

Query: 81  ATNRVGSQTHSADMRVYDAPGQPQDVKL------VTSNSRSIKVHSGDRAGVQCLVTKGD 134
              R+ + +     R  +   +                    +V  G  A   C V    
Sbjct: 451 PLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVI-AS 509

Query: 135 PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194
            P  ++W K+   +    +   R +G     L+I  +     G YT  A N+  +     
Sbjct: 510 SPPVVTWHKDDRELKQSVKYMKRYNGN-DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV 568

Query: 195 NLRV 198
            L V
Sbjct: 569 FLNV 572

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 60.7 bits (147), Expect = 3e-11
 Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 15/172 (8%)

Query: 16  PGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDS 74
               V ++C A        +    +       R    +    +      V I  +    +
Sbjct: 22  LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGR----RLKFWNETDPEFV-IDHMDANKA 76

Query: 75  GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD 134
           G YQC          +S  + +          K   S  R + +  G+   + C  +   
Sbjct: 77  GRYQCQYRIGHYRFRYSDTLELV---VTGLYGKPFLSADRGLVLMPGENISLTCS-SAHI 132

Query: 135 PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
           P    S  K G     +  +    SGE+ ++ S+  +    SG Y C     
Sbjct: 133 PFDRFSLAKEG-----ELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN 179

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 57.0 bits (138), Expect = 8e-11
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD----AEITIRSSGEYTSSLSIA 169
              +V  GDR  +   V+  +    + W+KNG+ +  +    A    +  G+    L  +
Sbjct: 16  EDQQVFVGDRVEMAVEVS--EEGAQVMWMKNGVELTREDSFKARYRFKKDGK-RHILIFS 72

Query: 170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
            +     G Y  + +         + L V E
Sbjct: 73  DVVQEDRGRYQVITNGGQC----EAELIVEE 99

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 5/84 (5%)

Query: 8  KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISH 63
            +     Q +  G  V +    +      + W  +G  L  +     +Y          
Sbjct: 10 LIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHI 68

Query: 64 VNISSVRVEDSGIYQCTATNRVGS 87
          +  S V  ED G YQ         
Sbjct: 69 LIFSDVVQEDRGRYQVITNGGQCE 92

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 59.9 bits (145), Expect = 8e-11
 Identities = 35/216 (16%), Positives = 59/216 (27%), Gaps = 23/216 (10%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             +     V++ C              +G   A DR    + ++          I  +  
Sbjct: 16  FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKV-----KFYIPDMNS 69

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
             +G Y C           S  + +              S     +V SG++    C   
Sbjct: 70  RMAGQYSCIYRVGELWSEPSNLLDLVVTEMYD---TPTLSVHPGPEVISGEKVTFYC--R 124

Query: 132 KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191
                     LK G      +    R  G+  +   +  ++T H G Y C  S    + +
Sbjct: 125 LDTATSMFLLLKEG-----RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWS 179

Query: 192 HSSN---LRVNEYTSSLSIA----TLSTGHSGNYTC 220
             S    L V     + S+A    T      G Y  
Sbjct: 180 FPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLL 215

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 59.0 bits (142), Expect = 8e-11
 Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 23/182 (12%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
           +  L  G  V + C  + +    +  +    PL     ++        ++          
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPKLLGIE---TPLPKKELLLPGNNRKVYEL--------SN 56

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
           V++     C +    G  T    + VY     P+ V+L    S       G +  ++C V
Sbjct: 57  VQEDSQPMCYSNCPDGQSTAKTFLTVYWT---PERVELAPLPSW---QPVGKQLTLRCQV 110

Query: 131 TKGDPP--LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188
             G P   LT+  L+    +  +  +   +    T  +        H   ++C     + 
Sbjct: 111 EGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVR----RDHHGAQFSCRTELDLR 166

Query: 189 SD 190
             
Sbjct: 167 PQ 168

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
            +++V     A   C      P  T++W K  L + +  +      G  T  L+I+ L  
Sbjct: 16  TNLQVEEKGTAVFTCKTE--HPAATVTWRKGLLELRASGKHQPSQEGL-TLRLTISALEK 72

Query: 174 GHSGNYTCVASNTVAS 189
             S  YTC      + 
Sbjct: 73  ADSDTYTCDIGQAQSR 88

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 21/105 (20%)

Query: 8   KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGD 59
            F +      ++        C  T +P   ++W+     L A  +      G  + L   
Sbjct: 10  CFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLT-- 66

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
                 IS++   DS  Y C      G     A + V      P 
Sbjct: 67  ------ISALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGPS 101

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 54.6 bits (132), Expect = 6e-10
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS--DAEITIRSSGEYTSSLSIATL 171
                + G+R  ++C V+  +    + W KNG  I+    +   IR  G+    L I   
Sbjct: 15  EDTTAYCGERVELECEVS--EDDANVKWFKNGEEIIPGPKSRYRIRVEGK-KHILIIEGA 71

Query: 172 STGHSGNYTCVASNTVASDNHSSNLRVNE 200
           +   +  Y+ + +   +    S+ L V+ 
Sbjct: 72  TKADAAEYSVMTTGGQS----SAKLSVDL 96

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 19/90 (21%)

Query: 8  KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVM---GQYMSLH 57
             +     T   G  V L+C  +     ++ W  +G  +      R+ +   G+   L 
Sbjct: 9  MVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 67

Query: 58 GDVISHVNISSVRVEDSGIYQCTATNRVGS 87
                  I      D+  Y    T    S
Sbjct: 68 --------IEGATKADAAEYSVMTTGGQSS 89

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 56.8 bits (136), Expect = 7e-10
 Identities = 39/183 (21%), Positives = 61/183 (33%), Gaps = 32/183 (17%)

Query: 25  IATGNPTPHISWKLDG-YPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN 83
           +AT NP   +  +  G + L GD  V  +  SL         I   R+ED+G Y      
Sbjct: 54  VATNNPDRRVKPETQGRFRLLGD--VQKKNCSLS--------IGDARMEDTGSYFFRVER 103

Query: 84  RVGSQ----THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT---KGDPP 136
               +     +  ++ V     +P              + SG    + C +    +  PP
Sbjct: 104 GRDVKYSYQQNKLNLEVTALIEKP-------DIHFLEPLESGRPTRLSCSLPGSCEAGPP 156

Query: 137 LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196
           LT SW  N L  L             +S L++      H  N TC      A       +
Sbjct: 157 LTFSWTGNALSPLD-------PETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV 209

Query: 197 RVN 199
           ++N
Sbjct: 210 QLN 212

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 14/91 (15%)

Query: 10  IQQTLQPGPPVSLKCIAT----GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN 65
             + L+ G P  L C         P    SW  +                      S + 
Sbjct: 131 FLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETT----------RSSELT 180

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
           ++    +      C    +    T    +++
Sbjct: 181 LTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 56.0 bits (135), Expect = 9e-10
 Identities = 30/177 (16%), Positives = 50/177 (28%), Gaps = 20/177 (11%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             +     V++ C              +G   A DR    + ++          I  +  
Sbjct: 13  FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERIN-----KVKFYIPDMNS 66

Query: 72  EDSGIYQCTATNRVGSQTHSA--DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
             +G Y C           S   D+ V +    P       S     +V SG++    C 
Sbjct: 67  RMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPT-----LSVHPGPEVISGEKVTFYC- 120

Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
                       LK G      +    R  G+  +   +  ++T H G Y C  S  
Sbjct: 121 -RLDTATSMFLLLKEG-----RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN 171

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 16/178 (8%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             +  G  V+++C  T           +G P   D         L     +  +I S+  
Sbjct: 14  SVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDT-----QNPLEPKNKARFSIPSMTE 67

Query: 72  EDSGIYQCTATNRVGSQTHS--ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
             +G Y+C   +  G    S   ++ V     +P       S   S  V SG+   +QC 
Sbjct: 68  HHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPT-----LSALPSPVVTSGENVTLQCG 122

Query: 130 VTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
                        + G   LS   +  +  SG++ +   +  ++  H     C  S  
Sbjct: 123 S--RLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRR 178

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 29/177 (16%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             +    PV+L+C            +        D+              + + I +++ 
Sbjct: 17  SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRYQDQ--------------AVLFIPAMKR 61

Query: 72  EDSGIYQCTATNRVGSQTHSA--DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
             +G Y+C+  N       S   ++       +P       S      V SG    +QC 
Sbjct: 62  SLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKP-----SLSAQPGPAVSSGGDVTLQC- 115

Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
                     +  K G     D          Y +S  I T++  HSG Y C + ++
Sbjct: 116 -QTRYGFDQFALYKEG-----DPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSS 166

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 54.5 bits (131), Expect = 4e-09
 Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 11/176 (6%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             +  G PV+L+C      T       +         +  + +           I S+  
Sbjct: 14  SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVK-----KGQFPIPSITW 67

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
           E +G Y+C   +    ++ S+D       G      L  S   S  V+SG    +QC   
Sbjct: 68  EHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTL--SAQPSPVVNSGGNVTLQC--D 123

Query: 132 KGDPPLTISWLKNGLPILSDAEITIR-SSGEYTSSLSIATLSTGHSGNYTCVASNT 186
                      K G         +   + G   +  S+  +S      Y C A ++
Sbjct: 124 SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS 179

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 11/115 (9%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
           P         T  PG  V+L C          + W L            G + S    + 
Sbjct: 7   PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-------GSHPSRWAGMG 59

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
             + + SV++ DSG Y C      G    +  + V   P +PQ      S   ++
Sbjct: 60  RRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLSCFRKSPLSNV 111

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 51.4 bits (122), Expect = 1e-07
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 9/113 (7%)

Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
           GD   + C   + +   T+ W+       S               L + ++    SGNY+
Sbjct: 21  GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP----SRWAGMGRRLLLRSVQLHDSGNYS 76

Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
           C  +        + +L V+       ++        N  C       S    +
Sbjct: 77  CYRAG---RPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVC--EWGPRSTPSLT 124

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 53.0 bits (127), Expect = 3e-08
 Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 18/180 (10%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             ++ G  V L+C +      H     +G      R V        G   ++ +I  + +
Sbjct: 128 PLVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVG---QIHDGVSKANFSIGPMML 183

Query: 72  EDSGIYQCTATNRVGSQTHSA-----DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
             +G Y+C  +        SA     D+ V     +P       S     KV +G+   +
Sbjct: 184 ALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKP-----SLSAQPGPKVQAGESVTL 238

Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
            C  +           + G           + +  + +   +   +  H G Y C  S  
Sbjct: 239 SC--SSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFR 294

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 6/126 (4%)

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSA--DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
           +S V    +G Y C  ++       SA  +  V    G  +   L+        V SG+R
Sbjct: 78  MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL--VKSGER 135

Query: 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVA 183
             +QC              K G+       +     G   ++ SI  +    +G Y C  
Sbjct: 136 VILQCWSDIM--FEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYG 193

Query: 184 SNTVAS 189
           S T   
Sbjct: 194 SVTHTP 199

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 10/117 (8%), Positives = 38/117 (32%), Gaps = 16/117 (13%)

Query: 12  QTLQPGPPVSLKCI-------ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHV 64
             +Q     +  C+              +I WK + + +  +++      ++     S V
Sbjct: 13  PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQY------TIINRTASSV 66

Query: 65  NISSVRVEDSGIYQCT--ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
             + +    +    C      ++    +   +     P +P+++  + +  + ++  
Sbjct: 67  TFTDIA-SLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCE 122

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 10/112 (8%)

Query: 99  APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL--TISWLK---NGLPILSDAE 153
           + G  +   +      S+ V +G  A V   V   + P   TI W K     L   S A 
Sbjct: 5   SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64

Query: 154 ITIRSSGE-----YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
            + + S       YT  L I  +  G  G Y          D+   N+ V  
Sbjct: 65  FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 12  QTLQPGPPVSLKCIATGNP---TPHISW----KLDGYPLAGDRFVMGQYMSLHGDVISH- 63
            +++ G    +     G      P I W     L+    +G RF   +  +   +V +  
Sbjct: 22  VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVE 81

Query: 64  VNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
           ++I  V + D G Y+     +    +   ++ V
Sbjct: 82  LHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* Length = 214

 Score = 51.4 bits (123), Expect = 4e-08
 Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 27/189 (14%)

Query: 14  LQPGPPVSLKCIATGNPTPH---ISWKLDGYPLAG----DRFVMGQYMSLHGDVISHVNI 66
           L  G   +L C  TG         +W       A     +R + G Y      V S +  
Sbjct: 16  LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYS-----VSSVLPG 70

Query: 67  SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
            +        + CTA         +A +       +P+ V L+   S  +     +   +
Sbjct: 71  CAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE-VHLLPPPSEELA--LNELVTL 127

Query: 127 QCLVTKGDPP-LTISWLKNGLPILSDAEIT-------IRSSGEY--TSSLSIATLSTGHS 176
            CL     P  + + WL+    +  +  +T        + +  +  TS L +        
Sbjct: 128 TCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRV-AAEDWKK 186

Query: 177 GN-YTCVAS 184
           G+ ++C+  
Sbjct: 187 GDTFSCMVG 195

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A 2l7u_A* 2e5e_A Length = 581

 Score = 51.9 bits (124), Expect = 9e-08
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 13/171 (7%)

Query: 11  QQTLQPGPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV-----ISHV 64
             T + G P+ LKC  A   P   + WKL+       + +  Q       V        +
Sbjct: 375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSL 434

Query: 65  NISSVRVEDSGIYQCTATNRVGSQTHS-ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
            + +V ++D GI++C A NR G +T S   +RVY  PG+P+    +  ++  +     ++
Sbjct: 435 FLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPE----IVDSASELTAGVPNK 490

Query: 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLST 173
            G  C+     P  T+SW  +G P++ + + ++++          + TL +
Sbjct: 491 VGT-CVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQS 540

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 33/234 (14%), Positives = 71/234 (30%), Gaps = 27/234 (11%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             ++    V L+C +      H     +G        +   +  +     S   I  +  
Sbjct: 16  PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFS---IGPMMQ 71

Query: 72  EDSGIYQCTATNRVGSQTHSA-----DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
           + +G Y+C  +        SA     D+ +     +P       S      V +G+   +
Sbjct: 72  DLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKP-----SLSAQPGPTVLAGESVTL 126

Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
            C  +           + G           + +G + +   +   +  H G Y C  S  
Sbjct: 127 SC--SSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFR 182

Query: 187 VASDN--HSSN---LRVNEYTSSLSIA----TLSTGHSGNYTCVASNTVASDNH 231
            +     +SS+   + V    S+   +    +  TG+  +    A   + S+  
Sbjct: 183 DSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEED 236

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 58/288 (20%), Positives = 99/288 (34%), Gaps = 55/288 (19%)

Query: 15  QPGPPVSLKCIATG-NPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGD----VISHVNISS 68
                 +L C+ +   P    ++WK DG P+     V     S   +      S+++++ 
Sbjct: 127 LQANKATLVCLISDFYPGAVTVAWKADGSPVKA--GVETTKPSKQSNNKYAASSYLSLTP 184

Query: 69  VRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQC 128
            + +    Y C  T+   +   +       A  +   V  +  +S+S    SG  A + C
Sbjct: 185 EQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKST---SGGTAALGC 241

Query: 129 LVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
           LV    P P+T+SW    L           +SG +T     A L +  SG Y+       
Sbjct: 242 LVKDYFPQPVTVSWNSGAL-----------TSGVHTFP---AVLQS--SGLYSL------ 279

Query: 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFT 247
                SS + V    SSL         +  Y C  ++  ++      +     P +  F 
Sbjct: 280 -----SSVVTVPS--SSLG--------TQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFP 324

Query: 248 ---FGELMEGVRTQVACVVQ---SGDLPLSLQWYKNGLAISQPDISIT 289
                 LM     +V CVV      D  +   WY +G+ +        
Sbjct: 325 PKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR 372

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 46.0 bits (109), Expect = 7e-06
 Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQT---HSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
           + + IS +  ED   Y C + N   +         + V   P     V L   +S  +  
Sbjct: 70  ASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEEL-- 127

Query: 119 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEIT---IRSSGEYT--SSLSIATLS 172
              ++A + CL++   P  +T++W  +G P+ +  E T    +S+ +Y   S LS+    
Sbjct: 128 -QANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQ 186

Query: 173 TGHSGNYTCVASN 185
                +Y+C  ++
Sbjct: 187 WKSHRSYSCQVTH 199

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 25/189 (13%)

Query: 10  IQQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGD 59
            + TL       + C+       +P    +W +DG  +        ++     Y      
Sbjct: 327 PKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYR----- 381

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
           V+S + +      D   Y+C  +N+         +       +   V  +  +   +   
Sbjct: 382 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEM--- 438

Query: 120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILS--DAEITIRSSGEY--TSSLSIATLSTG 174
           + ++  + CLV    P  + + W  NG P  +       + S G +   S L++   S  
Sbjct: 439 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV-DKSRW 497

Query: 175 HSGN-YTCV 182
             GN ++C 
Sbjct: 498 QQGNVFSCS 506

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 33/232 (14%), Positives = 60/232 (25%), Gaps = 23/232 (9%)

Query: 15  QPGPPVSLKCIATGN-PTPHISWK----------LDGYPLAGDRFVMGQYMSLHGDVISH 63
             G    L C  T   P   I W            +       R       +   ++   
Sbjct: 16  AAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFS 75

Query: 64  VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
           ++IS++   D+G Y C    R GS                        +  + +      
Sbjct: 76  ISISNITPADAGTYYC-VKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134

Query: 124 AGVQCLVTKGDP-PLTISWLKNGLPILSDAEIT--IRSSGEYT--SSLSIATLSTGHSGN 178
               C      P  +T+ W KNG  +         +  S  Y+  S+  +          
Sbjct: 135 VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQ 194

Query: 179 YTCVASNTVASDN------HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224
             C  ++     +      + S       T  ++   +   +  N TC    
Sbjct: 195 VICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRK 246

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 34/186 (18%), Positives = 57/186 (30%), Gaps = 18/186 (9%)

Query: 11  QQTLQPGPPVSLKCIATG-NPTP-HISWKLDGYPLAGDRFVMGQYMSLHGD----VISHV 64
                P   VS  C + G +P    + W  +G  L+  +        +       + S  
Sbjct: 126 AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQT---NVDPVGESVSYSIHSTA 182

Query: 65  NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRA 124
            +   R +      C   +     T   D     A          T       V + ++ 
Sbjct: 183 KVVLTREDVHSQVICEVAH----VTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQV 238

Query: 125 GVQCLVTKGDP-PLTISWLKNGLPILSDAEITIR--SSGEYT--SSLSIATLSTGHSGNY 179
            V C V K  P  L ++WL+NG    ++   T+     G Y   S L +   +       
Sbjct: 239 NVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKL 298

Query: 180 TCVASN 185
           TC   +
Sbjct: 299 TCQVEH 304

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 Length = 207

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS- 120
           S ++I   ++EDSG Y C A +                 GQ   V  V   S+     S 
Sbjct: 71  STLHIRDAQLEDSGTYFC-AADTWHISEGYELGTDKLVFGQGTQVT-VEPKSQPPAKPSV 128

Query: 121 ---GDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
               +   V CLV    P  +TIS   +   +  D  I I  SG+Y++           S
Sbjct: 129 FIMKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQYGD---S 185

Query: 177 GNYTCVAS 184
            + TC   
Sbjct: 186 NSVTCSVQ 193

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 26/192 (13%), Positives = 55/192 (28%), Gaps = 27/192 (14%)

Query: 11  QQTLQPGPPVSLKCIATGNPTP----HISWKLDG------YPLAGDRFVMGQYMSLHGDV 60
              L      ++ C+            ++W               ++   G        V
Sbjct: 122 PFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT-----V 176

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
            S + + +    +   YQC  T+    +           P    +V    +        S
Sbjct: 177 TSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFAT---PEWPGS 233

Query: 121 GDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIR----SSGEY--TSSLSIATLST 173
            D+  + CL+    P  +++ WL N + +      T +        +   S L + T + 
Sbjct: 234 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEV-TRAE 292

Query: 174 GHSGN-YTCVAS 184
               + + C A 
Sbjct: 293 WEQKDEFICRAV 304

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* Length = 239

 Score = 48.8 bits (116), Expect = 5e-07
 Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 25/190 (13%)

Query: 11  QQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGDV 60
           +  L  G    + C+       +P    SW +D   +        ++             
Sbjct: 26  KDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR-----S 80

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
           +S + I      +   ++C   +          +   +   +   V  +       +  +
Sbjct: 81  VSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAP---PKEEMT 137

Query: 121 GDRAGVQCLVTKGDPP-LTISWLKNGLPILSDA--EITIRSSGEY--TSSLSIATLSTGH 175
             +  + C+V    PP +   W  NG P  +      T+ + G Y   S L++    T  
Sbjct: 138 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNV-KKETWQ 196

Query: 176 SGN-YTCVAS 184
            GN +TC   
Sbjct: 197 QGNTFTCSVL 206

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 46.5 bits (110), Expect = 6e-07
 Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVM---GQYMSLHGDVIS-HVNI 66
            T++ G  ++LKC+ +      + W    G+ +  + + +    +Y  LH       + +
Sbjct: 11  ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITV 70

Query: 67  SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
            +V ++D G+Y+C   +     T    + V       
Sbjct: 71  PNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGE 106

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 43.8 bits (103), Expect = 7e-06
 Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 10/98 (10%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK--------NGLPILSDAEITIRSSG 160
           +T+++ +I V  G    ++C+        ++ WL         N  P+L +++  +    
Sbjct: 4   LTNHTETITVEEGQTLTLKCVT-SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHS 62

Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
               S+++  ++    G Y C+   + +       + V
Sbjct: 63  ANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIV 99

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 27/180 (15%), Positives = 54/180 (30%), Gaps = 18/180 (10%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
             ++    V L+C +      H     +G      R +   +  +     S   IS +  
Sbjct: 17  PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFS---ISRMTQ 72

Query: 72  EDSGIYQCTATNRVGSQTHSA-----DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
           + +G Y+C  +        SA     D+ +     +P       S      V +G+   +
Sbjct: 73  DLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKP-----SLSAQPGPTVLAGENVTL 127

Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
            C  +           + G           + +G + +   +   +  H G Y C  S  
Sbjct: 128 SC--SSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH 183

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 27/191 (14%)

Query: 11  QQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGDV 60
           + TL       + C+       +P    +W +DG  +        +      Y      V
Sbjct: 258 KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR-----V 312

Query: 61  ISHVNISSVRVEDSGIYQCTATNR-VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
           +S + +      +   Y+C  +N+ + +       +    P +PQ    V +   S    
Sbjct: 313 VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ----VYTLPPSRDEL 368

Query: 120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEI--TIRSSGEYT--SSLSIATLSTG 174
           + ++  + CLV    P  + + W  NG P  +       + S G +   S L++   S  
Sbjct: 369 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDK-SRW 427

Query: 175 HSGN-YTCVAS 184
             GN ++C   
Sbjct: 428 QQGNVFSCSVM 438

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 35/132 (26%), Positives = 51/132 (38%), Gaps = 20/132 (15%)

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI--------- 116
           + S+R  D+ +Y C             D    D  G+   V  V+S S            
Sbjct: 83  LRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVI-VSSASTKGPSVFPLAPS 141

Query: 117 -KVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEIT----IRSSGEYT-SSLSIA 169
            K  SG  A + CLV    P P+T+SW       L+    T    ++SSG Y+ SS+   
Sbjct: 142 SKSTSGGTAALGCLVKDYFPEPVTVSWNSGA---LTSGVHTFPAVLQSSGLYSLSSVVTV 198

Query: 170 TLSTGHSGNYTC 181
             S+  +  Y C
Sbjct: 199 PSSSLGTQTYIC 210

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLA--GDRFVMGQYMSLHGDVISHVN--I 66
           +T+  G  V LKC    +    + W       L     R +    + L       ++  I
Sbjct: 48  ETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISI 107

Query: 67  SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
           S+V + D G Y C+       +T  + + V   P +P 
Sbjct: 108 SNVALADEGEYTCSIFTM-PVRTAKSLVTVLGIPQKPI 144

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQY--MSLHGDVISHVN--IS 67
           T+  G    L C    N    + W       L  D     +   + L       ++  +S
Sbjct: 17  TVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVS 76

Query: 68  SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
            V + D G Y C+    +  +T  A + V   P
Sbjct: 77  DVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL--------SDAEITIRSSGEYTS 164
           ++++ V  G  A + C V   +   ++ W       L         D  I +  +  +  
Sbjct: 13  TQNVTVVEGGTAILTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL 71

Query: 165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
           S+S++ +S    G YTC    T+      + L V
Sbjct: 72  SISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 20/154 (12%)

Query: 65  NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRA 124
            +  +++E++G Y+C           +  + V  +P      +L+            +  
Sbjct: 85  RLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP----ASRLLLDQVGM----KENED 136

Query: 125 GVQCLVTKGDP-PLTISWLKNGLPILSDAEITI---------RSSGEY--TSSLSIATLS 172
              C  +   P  + I+W K         EI+             G +  TS L + +  
Sbjct: 137 KYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQ 196

Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLS 206
                 Y CV  +        SN  +     SLS
Sbjct: 197 EDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLS 230

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} Length = 231

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 21/197 (10%)

Query: 14  LQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRFVMGQYMSLHGD----VISHVNI 66
           L       L+C+    P+     ++W  +    +G+       +  H +      S V +
Sbjct: 25  LYISLDAKLRCLVVNLPSDSSLSVTWTREK---SGNLRPDPMVLQEHFNGTYSASSAVPV 81

Query: 67  SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
           S+        + CT  +       S  +     P  P  +     +   +   S  R  +
Sbjct: 82  STQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEEL---SLSRVTL 138

Query: 127 QCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
            CLV    P  + I WL++   + +   +T     E  ++      + G    +   +  
Sbjct: 139 SCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTA----NGAGGDGDTFFVYSKM 194

Query: 186 TVASDNHSSNLRVNEYT 202
           +V +   +       + 
Sbjct: 195 SVETAKWNGG---TVFA 208

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} Length = 218

 Score = 44.9 bits (106), Expect = 9e-06
 Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 25/191 (13%)

Query: 10  IQQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGD 59
           I+  L       + C+       +P   ISW ++   +                      
Sbjct: 19  IKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIR----- 73

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
           V+S + I          ++C   N+         +       +   V ++   +  +   
Sbjct: 74  VVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQL--- 130

Query: 120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEIT--IRSSGEY--TSSLSIATLSTG 174
           S     + CLV   +P  +++ W  NG    +  +    + S G Y   S L++   S  
Sbjct: 131 SRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNM-KTSKW 189

Query: 175 HSGN-YTCVAS 184
              + ++C   
Sbjct: 190 EKTDSFSCNVR 200

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} Length = 279

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 35/203 (17%), Positives = 63/203 (31%), Gaps = 40/203 (19%)

Query: 15  QPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGD------RFVMGQYM-SLHG 58
           + G  V ++C +       + W          L      G            +++ +   
Sbjct: 37  KSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS 96

Query: 59  DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
             +S + ++S   EDS  Y C+A       T  A+   +  PG    V     N    +V
Sbjct: 97  LTLSTLTVTSAHPEDSSFYICSA----RDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEV 152

Query: 119 ----------HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLS 167
                         +A + CL T   P  + +SW  NG  +          SG  T    
Sbjct: 153 AVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV---------HSGVSTDPQP 203

Query: 168 IATLSTGHSGNYTCVASNTVASD 190
           +      +   Y+  +   V++ 
Sbjct: 204 LKEQPALNDSRYSLSSRLRVSAT 226

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444

 Score = 44.9 bits (106), Expect = 1e-05
 Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 25/190 (13%)

Query: 11  QQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGDV 60
           +  L       + C+       +P   ISW ++   +                      V
Sbjct: 249 KDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLR-----V 303

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
           +S + I          ++C   N+        +  +    G  +  ++        +  +
Sbjct: 304 VSALPIQHQDWMSGKEFKCKVNNK--DLPAPIERTISKPKGSVRAPQVYVLPP-PEEEMT 360

Query: 121 GDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEI--TIRSSGEYT--SSLSIATLSTGH 175
             +  + C+VT   P  + + W  NG   L+       + S G Y   S L +       
Sbjct: 361 KKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEK-KNWV 419

Query: 176 SGN-YTCVAS 184
             N Y+C   
Sbjct: 420 ERNSYSCSVV 429

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 19/133 (14%)

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
           +  V+    G Y  T          + ++ VY  P        +   + +          
Sbjct: 258 LPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPP-----KVSLMPATLARAAPGEAPPE 312

Query: 126 VQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEY-----------TSSLSIATLS 172
           + CLV+   P   L + W   G P     +   +                +  L    ++
Sbjct: 313 LLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVT 372

Query: 173 TGHSGN-YTCVAS 184
           T   G  Y C   
Sbjct: 373 TEQHGARYACRIH 385

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 13  TLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMS--LHGDVISHVN--- 65
           + + G  + L+C  +        ++W+     LA     +G ++S      V        
Sbjct: 14  SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGL 73

Query: 66  -ISSVRVEDSGIYQCT-ATNRVGSQTHSADMRVYDAPGQPQDVK 107
            + S+ V D+G Y C   T   G+ T    + V ++       +
Sbjct: 74  TLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 11/108 (10%), Positives = 26/108 (24%), Gaps = 14/108 (12%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           + +  G  ++  C++       +    +   +  D                +V I    +
Sbjct: 208 KVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDG--------------ENVAIKIRNI 253

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
             S                   +     P  PQ +   T + + I   
Sbjct: 254 SVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICS 301

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E Length = 246

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 42/203 (20%)

Query: 15  QPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGD------RFVMGQYM-SLHG 58
           + G  V ++C +       + W          L      G            +++ +   
Sbjct: 14  KSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS 73

Query: 59  DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
             +S + ++S   EDS  Y C+      ++T       +  PG    V     N    +V
Sbjct: 74  LTLSTLTVTSAHPEDSSFYICS------ARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEV 127

Query: 119 ----------HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLS 167
                         +A + CL T   P  + +SW  NG  +          SG  T    
Sbjct: 128 AVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV---------HSGVCTDPQP 178

Query: 168 IATLSTGHSGNYTCVASNTVASD 190
           +      +   Y   +   V++ 
Sbjct: 179 LKEQPALNDSRYALSSRLRVSAT 201

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Length = 207

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 25/191 (13%)

Query: 10  IQQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGD 59
            +  L       + C+       +P    SW +D   +        +      +      
Sbjct: 11  PKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFR----- 65

Query: 60  VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
            +S + I      +   ++C   +          +       +   V  +       +  
Sbjct: 66  SVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPP---PKEQM 122

Query: 120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEIT--IRSSGEY--TSSLSIATLSTG 174
           + D+  + C++T   P  +T+ W  NG P  +       + + G Y   S L++   S  
Sbjct: 123 AKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNV-QKSNW 181

Query: 175 HSGN-YTCVAS 184
            +GN +TC   
Sbjct: 182 EAGNTFTCSVL 192

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A Length = 475

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 35/256 (13%), Positives = 70/256 (27%), Gaps = 36/256 (14%)

Query: 6   IYKFIQQTLQPGPPVSLKCIATG-NPTPHI--SWKLDGYPLAGDRF--VMGQYMSLHGDV 60
           ++     + QP   V + C+  G  P   +  +W   G  +    F         L+   
Sbjct: 130 VFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLY-TT 188

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGS----------------QTHSADMRVYDAPGQPQ 104
            S + + + +        C   +                     + S       +   P+
Sbjct: 189 SSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPR 248

Query: 105 DVKLVTSNSRSIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSGEY 162
            + L       +    G  A + C +T  +    +T +W  +               G Y
Sbjct: 249 -LSLHRPALEDLL--LGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCY 305

Query: 163 --TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE-------YTSSLSIATLSTG 213
             +S L        H   +TC A+   +    ++ L  +        +        L+  
Sbjct: 306 SVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALN 365

Query: 214 HSGNYTCVASNTVASD 229
                TC+A      D
Sbjct: 366 ELVTLTCLARGFSPKD 381

>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A 3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A* 2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B 3e3q_D Length = 226

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 33/191 (17%)

Query: 11  QQTLQPGPPVSLKCIATGNPTPHISWKLDGY---PLAGDRFVMGQYMSLHG--------- 58
           + T+  G  + L+C  + + TP++ W    Y   P  G + ++  Y              
Sbjct: 18  RVTVSEGASLQLRCKYSYSATPYLFW----YVQYPRQGLQMLLKYYSGDPVVQGVNGFEA 73

Query: 59  -----DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSN- 112
                D   H+  +SV   DS +Y C  + +          ++    G    V     N 
Sbjct: 74  EFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGS------KLSFGKGAKLTVSPNIQNP 127

Query: 113 --SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT 170
             +      S       CL T  D    +S  K+    ++D  +    S ++ S+ ++A 
Sbjct: 128 DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAW 187

Query: 171 LSTGHSGNYTC 181
            +     ++ C
Sbjct: 188 SN---KSDFAC 195

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 35/229 (15%), Positives = 60/229 (26%), Gaps = 26/229 (11%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
               PG  V L C         I+W LD         V+G   +L         I     
Sbjct: 16  YPDAPGEMVVLTC--DTPEEDGITWTLDQSSE-----VLGSGKTLT--------IQVKEF 60

Query: 72  EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
            D+G Y C     V S +     +  D       +K              ++  ++C   
Sbjct: 61  GDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQ--------KEPKNKTFLRCEAK 112

Query: 132 KGDPPLTISWLKNGLPILSDAEITIRSS---GEYTSSLSIATLSTGHSGNYTCVASNTVA 188
                 T  WL      L+ +  + R S      T   +  +       N     S    
Sbjct: 113 NYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQ 172

Query: 189 SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237
            D+       +     +  A     +    +      +   +   NL++
Sbjct: 173 EDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQL 221

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A Length = 240

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 11/141 (7%)

Query: 55  SLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD---MRVYDAPGQPQDVKLVTS 111
               D  S +N+S++ +EDS +Y C ++ R G + +      + V +        K+   
Sbjct: 68  QQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLF 127

Query: 112 NSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEY------TS 164
                ++ +  +A + CL     P  + +SW  NG  + S      ++  E       +S
Sbjct: 128 EPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSS 187

Query: 165 SLSIATLSTGHSGN-YTCVAS 184
            L ++     +  N + C   
Sbjct: 188 RLRVSATFWHNPRNHFRCQVQ 208

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 21/131 (16%)

Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
            +K   G    + C  +      T  W +   P  +     I ++G          ++  
Sbjct: 6   EVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGH--------RVTYQ 57

Query: 175 HSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 234
            S  Y       +       ++       SL+I       SG Y C        ++    
Sbjct: 58  KSSRYN------LKGHISEGDV-------SLTIENSVESDSGLYCCRVEIPGWFNDQKVT 104

Query: 235 LRVNVPPHIGP 245
             + V P + P
Sbjct: 105 FSLQVKPELVP 115

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 5/152 (3%)

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
           +SS+  +DS +Y C     V        + V  A   P  V  +   S +    +     
Sbjct: 82  LSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAA---QTNSMVT 138

Query: 126 VQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYT-SSLSIATLSTGHSGNYTCVA 183
           + CLV    P P+T++W    L         +  S  YT SS      S   S   TC  
Sbjct: 139 LGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNV 198

Query: 184 SNTVASDNHSSNLRVNEYTSSLSIATLSTGHS 215
           ++  +S      +   +      I T+    S
Sbjct: 199 AHPASSTKVDKKIVPRDCGCKPCICTVPEVSS 230

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 Length = 344

 Score = 39.8 bits (93), Expect = 6e-04
 Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 29/225 (12%)

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
           +SS+R ED+ +Y CT +  +        + V  A  +   V  +  +S+S    SG  A 
Sbjct: 83  LSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKS---TSGGTAA 139

Query: 126 VQCLVTKGDP-PLTISWLKNGLPILSDAEIT----IRSSGEYT-SSLSIATLSTGHSGNY 179
           + CLV    P P+T+SW       L+    T    ++SSG Y+ SS+     S+  +  Y
Sbjct: 140 LGCLVKDYFPEPVTVSWNSGA---LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTY 196

Query: 180 TCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
            C                VN   S+  +       S + T          +   +     
Sbjct: 197 IC---------------NVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPR 241

Query: 240 PPHIGPFT-FGELMEGVRTQVACVVQS-GDLPLSLQWYKNGLAIS 282
            P +       + +   +  + C+V+      ++++W  NG   +
Sbjct: 242 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN 286

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 37.5 bits (86), Expect = 7e-04
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 6/72 (8%)

Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG-HSGN 178
           SG    + C      P   I W  N   I    +   ++ G     LS+   S    SG 
Sbjct: 20  SGTTVILTC---PQYPGSEILWQHNDKNI--GGDEDDKNIGSDEDHLSLKEFSELEQSGY 74

Query: 179 YTCVASNTVASD 190
           Y C    +   D
Sbjct: 75  YVCYPRGSKPED 86

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... Length = 207

 Score = 38.7 bits (90), Expect = 9e-04
 Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 25/190 (13%)

Query: 11  QQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGDV 60
           + TL       + C+       +P    +W +DG  +        +      Y      V
Sbjct: 12  KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR-----V 66

Query: 61  ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
           +S + +      +   Y+C  +N+         +       +   V  +     S    +
Sbjct: 67  VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP---SRDELT 123

Query: 121 GDRAGVQCLVTKGDPP-LTISWLKNGLPILSDA--EITIRSSGEY--TSSLSIATLSTGH 175
            ++  + CLV    P  + + W  NG P  +       + S G +   S L++   S   
Sbjct: 124 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV-DKSRWQ 182

Query: 176 SGN-YTCVAS 184
            GN ++C   
Sbjct: 183 QGNVFSCSVM 192

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} Length = 253

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 27/196 (13%), Positives = 57/196 (29%), Gaps = 29/196 (14%)

Query: 15  QPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGDRF----VMGQYMSLHGDVI 61
             G  V+L+CI   +  P +SW         +      +        + G          
Sbjct: 14  PRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD 73

Query: 62  SHVNISSVRVEDSGIYQCTATNRVGSQTHSA------DMRVYDAPGQPQDVKLVTSNSRS 115
           + + +    +       CT++    + T          + V +        ++       
Sbjct: 74  TELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSE 133

Query: 116 IKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
            ++    +A + CL T   P  + +SW  NG  +          SG  T    +      
Sbjct: 134 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEV---------HSGVSTDPQPLKEQPAL 184

Query: 175 HSGNYTCVASNTVASD 190
           +   Y   +   V++ 
Sbjct: 185 NDSRYALSSRLRVSAT 200

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	100.0
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.97
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.97
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.97
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.97
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.97
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.97
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.97
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.97
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.96
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.96
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.96
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.96
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.96
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.96
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.96
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.96
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.96
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.95
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.95
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.95
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.95
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.95
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.95
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.95
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.95
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.95
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.94
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.94
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.94
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.94
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.94
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.94
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.94
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.94
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.94
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.94
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.94
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.94
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.94
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.94
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.94
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.94
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.94
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.93
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.93
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.93
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.93
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.93
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.93
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.93
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.93
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.93
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.92
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.92
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.92
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.92
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.92
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.92
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.92
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.92
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.92
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.92
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.92
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.91
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.91
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.91
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.91
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.91
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.91
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.91
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.91
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.91
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.91
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.91
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.91
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.91
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.91
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.91
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.91
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.9
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.9
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.9
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.9
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.9
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.9
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.9
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.9
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.9
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.9
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.9
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.9
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.9
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.9
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.89
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.89
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.89
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.89
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.89
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.89
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.89
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.89
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.89
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.89
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.89
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.89
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.88
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.88
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.88
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.88
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.88
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.88
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.88
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.87
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.87
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.87
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.87
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.87
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.87
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.87
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.87
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.87
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.87
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.87
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.87
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.87
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.87
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.87
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.87
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.87
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.87
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.86
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.86
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.86
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.86
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.86
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.86
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.86
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.86
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.86
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.86
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.86
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.86
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.86
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.85
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.85
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.85
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.85
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.85
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.85
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.85
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.85
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.85
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.84
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.84
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.84
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.84
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.84
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.84
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.84
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.84
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.84
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.84
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.84
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.84
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.84
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.83
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.83
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.83
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.83
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.83
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.83
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.83
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.83
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.83
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.82
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.82
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.82
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.82
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.82
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.82
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.82
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.82
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.82
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.81
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.81
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.81
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.81
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.81
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.81
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.81
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.81
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.81
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.8
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.8
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.8
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.8
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.8
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.8
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.8
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.79
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.79
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.78
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.78
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.78
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.78
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.78
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.78
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.78
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.78
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.78
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.77
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.77
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.77
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.77
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.76
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.76
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.76
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.76
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.76
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.76
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.76
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.76
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.75
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.75
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.75
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.75
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.75
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.74
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.74
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.74
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.74
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.73
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.73
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.73
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.73
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.73
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.73
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.73
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.72
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.71
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.71
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.71
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.71
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.71
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.71
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.71
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.71
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.71
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.71
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.71
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.71
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.7
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.7
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.7
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.69
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.69
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.69
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.69
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.69
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.69
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.69
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.69
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.69
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.68
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.68
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.68
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.68
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.68
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.68
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.68
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.68
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.68
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.67
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.67
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.67
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.67
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.67
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.67
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.67
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.67
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.67
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.66
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.66
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.66
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.66
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.66
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.66
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.66
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.66
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.66
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.65
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.65
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.65
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.65
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.65
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.65
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.65
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.65
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.64
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.64
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.64
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.64
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.64
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.64
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.63
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.63
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.62
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.62
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.62
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.62
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.62
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.62
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.62
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.61
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.61
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.61
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.61
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.61
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.61
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.61
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.61
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.61
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.61
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.61
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.61
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.61
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.6
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.6
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.6
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.6
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.6
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.6
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.6
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.6
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.6
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.6
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.59
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.59
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.59
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.59
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.59
1he7_A	126	High affinity nerve growth factor receptor; transf	99.59
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.59
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.58
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.58
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.58
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.58
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.58
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.58
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.58
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.58
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.58
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.58
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.57
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.57
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.57
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.57
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.57
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.56
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.56
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.56
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.56
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.55
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.55
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.55
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.55
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.55
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.55
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.54
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.54
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.54
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.54
2ens_A	96	Advanced glycosylation END product-specific recept	99.54
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.54
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.54
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.53
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.53
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.53
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.53
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.53
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.53
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.53
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.53
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.53
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.52
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.52
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.52
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.52
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.52
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.52
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.52
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.52
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.52
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.51
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.51
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.51
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.51
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.5
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.5
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.5
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.5
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.5
3rgv_A	200	YAE62 TCR A chain; TCR, MHC, MHC class I, immune s	99.5
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.49
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.49
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.49
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.49
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.49
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.49
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.49
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.49
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.49
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.49
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.48
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.48
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.48
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.48
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.48
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.48
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.48
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.47
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.47
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.47
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.47
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.47
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.47
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.47
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.46
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.45
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.45
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.45
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.45
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.45
3mbe_C	229	I-AG7; T cell receptor, histocompatability antigen	99.45
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.45
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	99.45
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.44
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.44
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.44
1he7_A	126	High affinity nerve growth factor receptor; transf	99.44
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.44
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.44
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.44
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.43
3c6l_A	185	TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus	99.15
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.43
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.42
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.42
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.42
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.42
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.41
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.41
3gsn_A	199	RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human	99.41
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.41
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	99.4
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.4
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.4

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=1.1e-39  Score=273.74  Aligned_cols=266  Identities=26%  Similarity=0.471  Sum_probs=214.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...|....+.+|+.++|.|.+.+.|.+.++|++++..+. ..++...     .......|.|.+++.+|+|.|+|.
T Consensus       197 pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~  271 (570)
T 3b43_A          197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT-----LVENTATLTVLKVTKGDAGQYTCY  271 (570)
T ss_dssp             CCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEE-----EETTEEEEEESSBCGGGCEEEEEE
T ss_pred             CCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEE-----EECCEEEEEEcccCcccCEEEEEE
Confidence            5777778888889999999999999998889999999999886 3333221     112236799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      +.|..|.....+.|.|..+|.      ..........+.+|+.+.|.|.+ .|.|.+.+.|++++..+....+.......
T Consensus       272 a~N~~g~~~~~~~l~V~~~p~------~~~~~~~~~~v~~g~~~~l~C~~-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~  344 (570)
T 3b43_A          272 ASNVAGKDSCSAQLGVQEPPR------FIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKFRMSFVE  344 (570)
T ss_dssp             EEETTEEEEEEEEECCBCCCE------EEECCCSBCCEESSCEEEEEEEE-ESSSSCEEEEEETTEECCCSSSEEEEEET
T ss_pred             EECCCCcEEEEEEEEeecCCc------ccccCCCccEEcCCCcEEEEEEE-eeCCCCEEEEeECCEECCCCCcEEEEEEC
Confidence            999988888888888876542      11122223457799999999999 68999999999999999877665544322


Q ss_pred             CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec----------------------------------------
Q psy14540        161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE----------------------------------------  200 (291)
Q Consensus       161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~----------------------------------------  200 (291)
                       ....|.|.++..+|+|.|+|.|.|..|.......+.+..                                        
T Consensus       345 -~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~  423 (570)
T 3b43_A          345 -SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR  423 (570)
T ss_dssp             -TEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTE
T ss_pred             -CEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCE
Confidence             356899999999999999999999998776555544111                                        


Q ss_pred             --------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeec
Q psy14540        201 --------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQS  265 (291)
Q Consensus       201 --------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~  265 (291)
                                    ...+|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+...+... +.+|+.+.|.|.+ .
T Consensus       424 ~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~-~  502 (570)
T 3b43_A          424 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATI-E  502 (570)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEE-E
T ss_pred             ECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEE-e
Confidence                          12478899999999999999999999998888999999999887766555 8899999999999 8


Q ss_pred             CCCCceEEEEECCEEc
Q psy14540        266 GDLPLSLQWYKNGLAI  281 (291)
Q Consensus       266 ~~p~~~v~W~~~~~~l  281 (291)
                      |.|++.|.|+|||..+
T Consensus       503 g~p~~~v~W~k~~~~~  518 (570)
T 3b43_A          503 GAEPISVAWFKDKGEI  518 (570)
T ss_dssp             SCSSCCCEEEETTEEC
T ss_pred             cCCCCEEEEEeCCeEe
Confidence            9999999999998655

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=2.4e-39  Score=271.52  Aligned_cols=271  Identities=26%  Similarity=0.479  Sum_probs=216.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|+++|..+... ....     .......+|.|.+++.+|+|.|+|.
T Consensus       101 ~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~  175 (570)
T 3b43_A          101 PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQT-----SFIHNVATLQILQTDQSHVGQYNCS  175 (570)
T ss_dssp             CCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEE-----EEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEE-----EEECCEEEEEECcCChHHCEEEEEE
Confidence            567777777788899999999999999888999999999988732 2221     1112346799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      +.|..|.......+.|.....+|    .....+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....+..+....
T Consensus       176 a~n~~g~~~~~~~l~v~~~~~pp----~~~~~p~~~~v~~G~~~~l~C~~-~g~p~p~i~W~k~g~~i~~~~~~~~~~~~  250 (570)
T 3b43_A          176 ASNPLGTASSSAKLTLSEHEVPP----FFDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVE  250 (570)
T ss_dssp             EEETTEEEEEEEEEEEECCCCCC----EEEECCCCBCCBSBSCEEEEEEE-ESSSCCEEEEEETTEECCTTSSEEEEEET
T ss_pred             EEeCCcEEEEEEEEEEcCCCCCC----ccccCCceeEecCCCeEEEEEEE-EECCCCEEEEEECCEECcCCCcEEEEEEC
Confidence            99988887777788886544322    12233445667899999999999 68889999999999998776665544322


Q ss_pred             CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE------------------------------------------
Q psy14540        161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV------------------------------------------  198 (291)
Q Consensus       161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~------------------------------------------  198 (291)
                       ....|.|.++..+|.|.|+|.|.|..|.......+.+                                          
T Consensus       251 -~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~  329 (570)
T 3b43_A          251 -NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE  329 (570)
T ss_dssp             -TEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETT
T ss_pred             -CEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECC
Confidence             3568999999999999999999998775543333320                                          


Q ss_pred             -------------eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEee
Q psy14540        199 -------------NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQ  264 (291)
Q Consensus       199 -------------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~  264 (291)
                                   ......|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+...+... +.+|+.+.|.|.+ 
T Consensus       330 ~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~-  408 (570)
T 3b43_A          330 TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL-  408 (570)
T ss_dssp             EECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEE-
T ss_pred             EECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEE-
Confidence                         0113568899999999999999999999999999999999999887766655 8899999999999 


Q ss_pred             cCCCCceEEEEECCEEccCC
Q psy14540        265 SGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       265 ~~~p~~~v~W~~~~~~l~~~  284 (291)
                      .|.|+|+|.|+|||.+|..+
T Consensus       409 ~g~P~p~v~W~k~g~~l~~~  428 (570)
T 3b43_A          409 QGTPPFQVSWHKDKRELRSG  428 (570)
T ss_dssp             ESSSSCCCEEEETTEECCSS
T ss_pred             ecCCCCEEEEEECCEECcCC
Confidence            89999999999999998654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=4.4e-36  Score=230.79  Aligned_cols=231  Identities=24%  Similarity=0.442  Sum_probs=185.6

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .||.|...|....+.+|+.++|.|.+.+.|.+.+.|++++..+.. ..+...     .......|.|.+++..|+|.|+|
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~d~G~Y~C   78 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT-----LVENTATLTVLKVTKGDAGQYTC   78 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEE-----EETTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEE-----EcCCEEEEEEecCCcccCEEEEE
Confidence            489999999999999999999999999888889999999998873 333221     12234679999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540         80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      .+.+..+.....+.|.|...|.      ..........+.+|+.+.|.|.+ .+.|.+.+.|++++..+.......... 
T Consensus        79 ~~~n~~g~~~~~~~l~V~~~p~------~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~-  150 (284)
T 2rik_A           79 YASNVAGKDSCSAQLGVQEPPR------FIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKFRMSF-  150 (284)
T ss_dssp             EEEETTEEEEEEEEEEEECCCE------EEECCCSEEEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCCSSSEEEEE-
T ss_pred             EEEECCceEEEEEEEEccCCCc------ccccCCCceEecCCceEEEEEEE-eeeCCCEEEEEECCEECcCCCcEEEEE-
Confidence            9998888888888888887652      12222334567899999999999 688999999999998876554332211 


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV  239 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~  239 (291)
                                                             ......|.|.++..+|+|.|+|.+.|..+.....+.|.|..
T Consensus       151 ---------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  191 (284)
T 2rik_A          151 ---------------------------------------VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE  191 (284)
T ss_dssp             ---------------------------------------ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ---------------------------------------cCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec
Confidence                                                   11235677888888889999999998888888888999999


Q ss_pred             CCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        240 PPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       240 ~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      +|.+...+... +.+|+.++|.|.+ .+.|++.+.|+++|..+..+
T Consensus       192 ~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~  236 (284)
T 2rik_A          192 PPVFRKKPHPVETLKGADVHLECEL-QGTPPFQVSWHKDKRELRSG  236 (284)
T ss_dssp             CCBCCSCCCCEEECTTCCEEEEEEC-BSSSCCEEEEEETTEEECBT
T ss_pred             CCcceeCCCcceecCCCeEEEEEEE-EecCCCEEEEEECCEECcCC
Confidence            99887766655 8899999999999 88999999999999998654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=1.5e-37  Score=248.78  Aligned_cols=267  Identities=25%  Similarity=0.425  Sum_probs=198.5

Q ss_pred             CCCcceeecceeee---ecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeec-CCCCCe
Q psy14540          1 SHPQLIYKFIQQTL---QPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSV-RVEDSG   75 (291)
Q Consensus         1 s~p~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G   75 (291)
                      ++|.|...|....+   .+|+.+.|.|.+.+.|.+.|.|+|+|..+... ....   ....+    .|.|.+. +.+|+|
T Consensus         4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~---~~~~g----~l~i~~~~~~~D~G   76 (384)
T 3kld_A            4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRY---SVVDG----SLLINNPNKTQDAG   76 (384)
T ss_dssp             EEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CE---EEETT----EEEEESCCHHHHCE
T ss_pred             CCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccE---EEECC----EEEEcCCCCcccCE
Confidence            36889999988776   58899999999999999999999999988632 1111   11111    3566665 788999


Q ss_pred             EEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCce
Q psy14540         76 IYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI  154 (291)
Q Consensus        76 ~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~  154 (291)
                      .|+|.+.|..|.. +....+.+...+...      ........+.+|+.+.|.|....+.|.+.+.|++++.++....+.
T Consensus        77 ~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~------~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~  150 (384)
T 3kld_A           77 TYQCIATNSFGTIVSREAKLQFAYLENFK------TRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRR  150 (384)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEEEECCCS------CCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSE
T ss_pred             EEEEEEEcCcccEEecceEEEEecccccc------cCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccE
Confidence            9999999887753 344555554433211      112234678899999999987556678899999999887655544


Q ss_pred             EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC------------------------------------ceEEE-
Q psy14540        155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH------------------------------------SSNLR-  197 (291)
Q Consensus       155 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~------------------------------------~~~~~-  197 (291)
                      .....   ...|.|.++..+|+|.|+|.+.|..+....                                    .+.+. 
T Consensus       151 ~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C  227 (384)
T 3kld_A          151 FVSQE---TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC  227 (384)
T ss_dssp             EECTT---TCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEE
T ss_pred             EEEcC---CCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEE
Confidence            33322   346999999999999999999997653210                                    00000 


Q ss_pred             -------------------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-c
Q psy14540        198 -------------------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-L  251 (291)
Q Consensus       198 -------------------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~  251 (291)
                                               .......|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+....... +
T Consensus       228 ~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v  307 (384)
T 3kld_A          228 FALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHV  307 (384)
T ss_dssp             EEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEE
T ss_pred             EEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEe
Confidence                                     00114579999999999999999999999988888889998888766555444 8


Q ss_pred             cCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        252 MEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       252 ~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      .+|+.+.|.|.+ .|.|.|.|.|+|||.+|...
T Consensus       308 ~~g~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~  339 (384)
T 3kld_A          308 AMEESVFWECKA-NGRPKPTYRWLKNGDPLLTR  339 (384)
T ss_dssp             CTTCCEEEECEE-EEESCCEEEEEETTEECCCB
T ss_pred             cCCCCEEEEeEC-CccCCCeEEEEECCEECCCC
Confidence            999999999999 89999999999999998543

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=1.1e-36  Score=245.58  Aligned_cols=265  Identities=23%  Similarity=0.419  Sum_probs=199.2

Q ss_pred             CCcceee-cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC---CeeEeceEEeeccceEEEEEE----eecCCCC
Q psy14540          2 HPQLIYK-FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNI----SSVRVED   73 (291)
Q Consensus         2 ~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i----~~~~~~d   73 (291)
                      ||.|... +....+.+|+.++|.|.+.+.|.+.+.|+++|..+..   .+....     ...  .+|.|    .+++.+|
T Consensus        16 ~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~-----~~~--~~l~i~~~~~~~~~~D   88 (404)
T 3p3y_A           16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMR-----RRS--GTLVIDFRSGGRPEEY   88 (404)
T ss_dssp             CCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCC-----SSS--CCCBCCCTTTCCTTSS
T ss_pred             CCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEe-----cCC--ceEEEEeccCCCCccC
Confidence            6777754 5667899999999999999889999999999987752   111110     111  22334    3788999


Q ss_pred             CeEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEe-ccCC
Q psy14540         74 SGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP-ILSD  151 (291)
Q Consensus        74 ~G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~-~~~~  151 (291)
                      +|.|+|.+.+..+.. +..+.+.|...+..+.      .......+.+|+.+.|.|.+..+.|.+.+.|++++.. +...
T Consensus        89 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~------~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~  162 (404)
T 3p3y_A           89 EGEYQCFARNKFGTALSNRIRLQVSKSPLWPK------ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD  162 (404)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECCCCCCCC------CCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCC
T ss_pred             CEEEEEEEEcCCCeEeeeeEEEEEeccCcccc------CCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCC
Confidence            999999999887765 4667788876653321      2223467889999999999866889999999998744 3333


Q ss_pred             CceEEeccCCceEEEEEeeCCCCC-ceeEEEEEEecCCCCC-----CceEE-----------------------------
Q psy14540        152 AEITIRSSGEYTSSLSIATLSTGH-SGNYTCVASNTVASDN-----HSSNL-----------------------------  196 (291)
Q Consensus       152 ~~~~~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~-----~~~~~-----------------------------  196 (291)
                      .+.....    ...|.|.++...| .|.|+|.+.|..+...     ..+.+                             
T Consensus       163 ~~~~~~~----~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~  238 (404)
T 3p3y_A          163 KRVSQGH----NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGM  238 (404)
T ss_dssp             SSEEECT----TSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTS
T ss_pred             CcEEEcC----CCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCC
Confidence            3443332    2358999999999 5999999998765421     01111                             


Q ss_pred             ----E--------------------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCC
Q psy14540        197 ----R--------------------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPF  246 (291)
Q Consensus       197 ----~--------------------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~  246 (291)
                          .                          .......|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|.+...
T Consensus       239 ~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~  318 (404)
T 3p3y_A          239 DLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDE  318 (404)
T ss_dssp             CEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEC
T ss_pred             CEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeecc
Confidence                0                          1111568999999999999999999999998888999999988877666


Q ss_pred             Cccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        247 TFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       247 ~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      +... +.+|+.++|.|.+ .|.|.+.+.|++||..+...
T Consensus       319 ~~~~~v~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~  356 (404)
T 3p3y_A          319 PKNLILAPGEDGRLVCRA-NGNPKPTVQWMVNGEPLQSA  356 (404)
T ss_dssp             CCCEEECTTCCEEEECEE-EEESCCEEEEEETTEEGGGS
T ss_pred             CCcceeecCCcEEEEEEc-cccCCCceEEEECCEecCCC
Confidence            5555 8899999999999 88999999999999999654

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=7e-36  Score=240.90  Aligned_cols=258  Identities=11%  Similarity=0.114  Sum_probs=173.0

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      +.++..|..+.|.+|+++.|.|.+.+.|.+.+.|++++..+..... .    ........+|.|.+++.+|+|.|+|.+.
T Consensus        49 ~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~-~----~~~~~~~~sL~I~~v~~~D~G~Y~C~a~  123 (423)
T 3qs7_E           49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH-F----DLQNRGVVSMVILKMTETQAGEYLLFIQ  123 (423)
T ss_dssp             -------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB-C---------CEEEEEESSCCSSSCSEEEEEEE
T ss_pred             CcceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccce-e----ccccceEEEEEEeecCcccCEEEEEEEE
Confidence            3556677788999999999999999999999999999877653211 1    1112233569999999999999999999


Q ss_pred             CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCc
Q psy14540         83 NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY  162 (291)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  162 (291)
                      |..+.....+.|.|...+..        .......+..|+.+.|.|.+ .|.|.|.+.|++++..+.........     
T Consensus       124 N~~g~~~~~~~l~V~~~p~~--------~~~~p~~~~~~~~~~L~C~a-~G~P~P~i~W~k~~~~~~~~~~~~~~-----  189 (423)
T 3qs7_E          124 SEATNYTILFTVSIRNTLLY--------TLRRPYFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCKEESPA-----  189 (423)
T ss_dssp             C--CEEEEEEEEEEC-------------CEEEEEEEECSSSSCEEEEE-EESSCCEEEEEEC------------------
T ss_pred             cCCCcEEEEEEEEEecCccc--------cccCCcEeccCCceEEEEEE-eeecCCeEEEEECCCCCccccccccc-----
Confidence            99888877788887643311        00111234568888999999 69999999999988754321100000     


Q ss_pred             eEEEEE-eeCCCCCceeEEEEEEecCCCCCC-ceEEEE-------------------------ec---------------
Q psy14540        163 TSSLSI-ATLSTGHSGNYTCVASNTVASDNH-SSNLRV-------------------------NE---------------  200 (291)
Q Consensus       163 ~~~l~i-~~~~~~d~g~y~C~~~~~~~~~~~-~~~~~~-------------------------~~---------------  200 (291)
                       ..... ......|+|.|+|.|.|..|.... .+.+.+                         ..               
T Consensus       190 -~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~  268 (423)
T 3qs7_E          190 -VVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA  268 (423)
T ss_dssp             -CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSB
T ss_pred             -cccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEE
Confidence             00000 111578999999999998775432 122220                         00               


Q ss_pred             -------------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc---ccccCCceEE
Q psy14540        201 -------------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF---GELMEGVRTQ  258 (291)
Q Consensus       201 -------------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~g~~v~  258 (291)
                                         ....|.|.++..+|+|.|+|.|.|.   .+..+.|.|..+|.+...+.   ..+.+|+.+.
T Consensus       269 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~  345 (423)
T 3qs7_E          269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFC  345 (423)
T ss_dssp             CCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCC
T ss_pred             ccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEE
Confidence                               0136999999999999999999998   66778888888876654432   2288999999


Q ss_pred             EEEEeecCCCCceEEEEECCEEccCC
Q psy14540        259 VACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       259 l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      |.|.+ .|.|.|.|+|+|||..|.+.
T Consensus       346 l~C~~-~g~P~p~i~W~k~g~~l~~~  370 (423)
T 3qs7_E          346 FSVRF-KAYPQIRCTWTFSRKSFPCE  370 (423)
T ss_dssp             EEEEE-EEESCCEEEEEETTEEEECB
T ss_pred             EEEEE-EEcCCCeEEEEECCEECCCc
Confidence            99999 89999999999999999654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=2.3e-35  Score=237.82  Aligned_cols=262  Identities=28%  Similarity=0.431  Sum_probs=196.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCC---eeEeceEEeeccceEEEEEEeec-----CCC
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGD---RFVMGQYMSLHGDVISHVNISSV-----RVE   72 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~-----~~~   72 (291)
                      ...|...|.+..+.+|+.++|.|.+.+ .+.+.+.|+|+|..+...   +...     ...   ..|.|.++     +.+
T Consensus        21 ~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~-----~~~---~~l~i~~~~~~~~~~~   92 (403)
T 3laf_A           21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQ-----LPN---GSLLIQNILHSRHHKP   92 (403)
T ss_dssp             SSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEE-----CTT---SCEEECSCCCBTTBCS
T ss_pred             eEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEE-----ecC---CcEEEeeeeccCCCCC
Confidence            346778899999999999999999987 677889999999988622   2111     111   12556666     678


Q ss_pred             CCeEEEEEEeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540         73 DSGIYQCTATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  150 (291)
Q Consensus        73 d~G~y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~  150 (291)
                      |+|.|+|.+.+..+..  +..+.+.|..++       .....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus        93 D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~-------~~~~~~~~~~~~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~  164 (403)
T 3laf_A           93 DEGLYQCEASLGDSGSIISRTAKVMVAGPL-------RFLSQTESITAFMGDTVLLKCEV-IGDPMPTIHWQKNQQDLNP  164 (403)
T ss_dssp             SCEEEEEEEECGGGCEEECCCEEEEECCCC-------EECSCCCCEEEETTSCEEECCCE-ECSSCCEEEEEESSSBCCC
T ss_pred             cceEEEEEEEeCCCccEEEEEEEEEecCCC-------ccccCCCcEEEEcCCeEEEEEEE-cccCCCeEEEEECCEeccc
Confidence            9999999998543332  344555555432       22234456788899999999998 6889899999999987743


Q ss_pred             C---CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC-CceEEEEe---------------------------
Q psy14540        151 D---AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN-HSSNLRVN---------------------------  199 (291)
Q Consensus       151 ~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~~~~---------------------------  199 (291)
                      .   .+.....    ...|.|..+..+|.|.|+|.+.|..+... ....+.+.                           
T Consensus       165 ~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~  240 (403)
T 3laf_A          165 IPGDSRVVVLP----SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV  240 (403)
T ss_dssp             CTTCCSEEECT----TSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEE
T ss_pred             cCCceEEEEcC----CceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEE
Confidence            2   2222221    23699999999999999999999776532 22222200                           


Q ss_pred             -------------------------------ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc
Q psy14540        200 -------------------------------EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF  248 (291)
Q Consensus       200 -------------------------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~  248 (291)
                                                     .....|.|.++..+|+|.|+|.|.|..+..+..+.|.|..+|.+...+.
T Consensus       241 l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~  320 (403)
T 3laf_A          241 LECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPS  320 (403)
T ss_dssp             ECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCC
T ss_pred             EEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCc
Confidence                                           0135699999999999999999999999888999999998887766655


Q ss_pred             cc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        249 GE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       249 ~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      .. +.+|+.++|.|.+ .+.|.+.+.|++||..+...
T Consensus       321 ~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~  356 (403)
T 3laf_A          321 NLYAYESMDIEFECAV-SGKPVPTVNWMKNGDVVIPS  356 (403)
T ss_dssp             CEECCTTCCEEECCEE-EEESCCEEEEEETTEECCCS
T ss_pred             ceEEecCCeEEEEEEE-eeccCCEEEEEECCEECCCC
Confidence            55 8899999999999 88899999999999988544

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-35  Score=257.96  Aligned_cols=266  Identities=33%  Similarity=0.592  Sum_probs=214.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...+.........+...+.|.|.+++..|+|.|+|.
T Consensus       429 ~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  508 (816)
T 3dmk_A          429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI  508 (816)
T ss_dssp             CCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEE
T ss_pred             CCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEE
Confidence            6777777777889999999999999999999999999999887 444444444444556677899999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      +.+..|.......|.|...|..        .......+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....  
T Consensus       509 a~n~~g~~~~~~~l~V~~~p~~--------~~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~k~~~~l~~~~~~~~~~--  577 (816)
T 3dmk_A          509 AKSKVGVAEHSAKLNVYGLPYI--------RQMEKKAIVAGETLIVTCPV-AGYPIDSIVWERDNRALPINRKQKVFP--  577 (816)
T ss_dssp             EEETTEEEEEEEEEEECSSCEE--------CCCCCEEEETTCCEEEECCE-ECSSEEEEEEEETTEESCCSTTEEECT--
T ss_pred             EEECCCeEEEEEEEEEecCCee--------EccCCeEEecCCeEEEEEEe-cCCCCCEEEEEECCeEcccCCceEEec--
Confidence            9999888888888888765411        22334667899999999999 688889999999999987766555443  


Q ss_pred             CceEEEEEeeCC-CCCceeEEEEEEecCCCCCC-ceEEEE----------------------------------------
Q psy14540        161 EYTSSLSIATLS-TGHSGNYTCVASNTVASDNH-SSNLRV----------------------------------------  198 (291)
Q Consensus       161 ~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~-~~~~~~----------------------------------------  198 (291)
                        ...|.|.++. ..|.|.|+|.+.|..|.... .+.+.+                                        
T Consensus       578 --~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~  655 (816)
T 3dmk_A          578 --NGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT  655 (816)
T ss_dssp             --TSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEE
T ss_pred             --CCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEE
Confidence              2368999997 58999999999998774321 122210                                        


Q ss_pred             -----------------eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEE
Q psy14540        199 -----------------NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVA  260 (291)
Q Consensus       199 -----------------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~  260 (291)
                                       ......|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.+...+... +.+|+.++|.
T Consensus       656 ~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~  735 (816)
T 3dmk_A          656 LDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVE  735 (816)
T ss_dssp             ETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEEEE
T ss_pred             ECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEEEE
Confidence                             0114679999999999999999999999988889999999988876665555 8899999999


Q ss_pred             EEeecCCCCceEEEEECCEEc
Q psy14540        261 CVVQSGDLPLSLQWYKNGLAI  281 (291)
Q Consensus       261 C~~~~~~p~~~v~W~~~~~~l  281 (291)
                      |.+ .|.|.|.|+|++++..+
T Consensus       736 C~~-~g~P~p~i~W~k~~~~~  755 (816)
T 3dmk_A          736 CKA-DGFPKPQVTWKKAVGDT  755 (816)
T ss_dssp             CEE-EEESCCEEECCEECSSS
T ss_pred             EEE-ecCCCCeEEEEecCCCC
Confidence            999 88999999999987554

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=2.1e-35  Score=236.86  Aligned_cols=269  Identities=21%  Similarity=0.375  Sum_probs=199.7

Q ss_pred             CCcceeecce-eeeecCCcEEEEEEecCCCCCeeEEEE-CCeecCCC-eeEeceEEeeccceEEEEEEeecCCCC-----
Q psy14540          2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVED-----   73 (291)
Q Consensus         2 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d-----   73 (291)
                      +|.|+..|.. ..+.+|+.++|.|.+.+.|.+.+.|++ +|..+... ....   . . .+  .+|.|.+++..|     
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~---~-~-~~--~~L~i~~~~~~d~~~~~   75 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ---I-S-SD--GKLVFPPFRAEDYRQEV   75 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBE---E-C-ST--TEEEECCCCGGGCCHHH
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceE---E-c-CC--ceEEecccChhhccccc
Confidence            7899988876 457899999999999988899999999 78776521 1110   1 1 11  248999999987     


Q ss_pred             -CeEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC---CceeEEeECCEec
Q psy14540         74 -SGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP---PLTISWLKNGLPI  148 (291)
Q Consensus        74 -~G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~  148 (291)
                       +|.|+|.+.+..|.. +..+.+.+...+...       .......+.+|+.+.|.|.+. +.+   .+.+.|++++..+
T Consensus        76 d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~-------~~~~~~~v~~G~~v~l~C~~~-~~~~~~~~~v~W~~~~~~~  147 (388)
T 2v5m_A           76 HAQVYACLARNQFGSIISRDVHVRAVVAQYYE-------ADVNKEHVIRGNSAVIKCLIP-SFVADFVEVVSWHTDEEEN  147 (388)
T ss_dssp             HEEEEEEEEEETTEEEECCCEEEEEECCCCCC-------CBCCCEEEETTSCEEECCBCC-TTTTTTEEEEEEEETTCCE
T ss_pred             cCceEEEEEEccCCeEEecceEEEEccccccc-------cCccceeeecCCcEEEEEECc-CCCCCCcceEEEEeCCCcc
Confidence             999999999887753 456667776554322       223446788999999999984 443   3789999998765


Q ss_pred             cC-----CCceEEeccCCceEEEEEeeCCCCCc-eeEEEEEEecCCCCC------CceEEE-------------------
Q psy14540        149 LS-----DAEITIRSSGEYTSSLSIATLSTGHS-GNYTCVASNTVASDN------HSSNLR-------------------  197 (291)
Q Consensus       149 ~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~~------~~~~~~-------------------  197 (291)
                      ..     ..+.....    ...|.|.++..+|. |.|+|.+.|..+...      ..+.+.                   
T Consensus       148 ~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~  223 (388)
T 2v5m_A          148 YFPGAEYDGKYLVLP----SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE  223 (388)
T ss_dssp             ECSSSCBTTTEEECT----TSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEE
T ss_pred             cccccCCCCcEEEcc----CCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceE
Confidence            32     12232222    23699999999999 999999998753211      011110                   


Q ss_pred             -----------------------------------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEE
Q psy14540        198 -----------------------------------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR  236 (291)
Q Consensus       198 -----------------------------------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~  236 (291)
                                                               .......|.|.++..+|+|.|+|.|.|..+..+..+.|.
T Consensus       224 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~  303 (388)
T 2v5m_A          224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT  303 (388)
T ss_dssp             EETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             EeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEE
Confidence                                                     000135789999999999999999999999888888999


Q ss_pred             EecCCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCCeeeEee
Q psy14540        237 VNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITL  290 (291)
Q Consensus       237 v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~  290 (291)
                      |..+|.+...+... +.+|+.++|.|.+ .|.|.+.|.|++||..+...+..+.|
T Consensus       304 V~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~i~~~~~~L~i  357 (388)
T 2v5m_A          304 VTAPLSAKIDPPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGHSESVLRI  357 (388)
T ss_dssp             EEEEEEEEEESSEEEECTTSCEEEEEEE-EEECCCEEEEEETTEECSCCSSEEEE
T ss_pred             EeCCCccccCCCcEEecCCCCEEEEEEe-ccccCCeEEEEECCEECccCCCEEEE
Confidence            98887765555444 8999999999999 88999999999999999776655554

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=3.2e-36  Score=242.16  Aligned_cols=269  Identities=21%  Similarity=0.301  Sum_probs=200.7

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .||.|...|....+.+|+.++|.|.+.+ .|.+.+.|+++|..+......   ......  ..+|.|.+++.+|+|.|+|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~---~~~~~~--~~~L~i~~~~~~D~G~Y~C   79 (395)
T 1bih_A            5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHN---AALRKD--EGSLVFLRPQASDEGHYQC   79 (395)
T ss_dssp             CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTT---EEECTT--SCCEEESSCCGGGCEEEEE
T ss_pred             CCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccce---EEEecC--CceEEEecCCCCCCcEEEE
Confidence            4899999999999999999999999998 888999999999887732210   011111  2359999999999999999


Q ss_pred             EEeCCCCcee-eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECC---EeccC----C
Q psy14540         80 TATNRVGSQT-HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG---LPILS----D  151 (291)
Q Consensus        80 ~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~---~~~~~----~  151 (291)
                      .+.+..+... ..+.+.+...+.++   .    .+....+.+|+.+.|.|.+..+.|.+.+.|++++   .+...    .
T Consensus        80 ~a~n~~g~~~s~~~~l~v~~~~~p~---~----~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~  152 (395)
T 1bih_A           80 FAETPAGVASSRVISFRKTYLIASP---A----KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFD  152 (395)
T ss_dssp             EEEETTEEEECCCEEEEEEEEECCC---C----EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCC
T ss_pred             EEEeCCCeEEeEEEEEEEEEeecCC---c----CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccccccccc
Confidence            9998766543 33555554432211   1    1234567799999999996568889999999986   22111    2


Q ss_pred             CceEEeccCCceEEEEEeeCCCCCce---eEEEEEEecCCCCCCceEE----------------------------E---
Q psy14540        152 AEITIRSSGEYTSSLSIATLSTGHSG---NYTCVASNTVASDNHSSNL----------------------------R---  197 (291)
Q Consensus       152 ~~~~~~~~~~~~~~l~i~~~~~~d~g---~y~C~~~~~~~~~~~~~~~----------------------------~---  197 (291)
                      .+.....    ...|.|..+...|.|   .|+|.+.|..+........                            .   
T Consensus       153 ~~~~~~~----~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~  228 (395)
T 1bih_A          153 RRITAGP----DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGD  228 (395)
T ss_dssp             TTEEECT----TSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTS
T ss_pred             ccEEEcC----CCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCC
Confidence            2333322    235999999999999   9999999988764322111                            0   


Q ss_pred             ------------------------Ee------------ccceEEEEeeeecCCCeeEEEEeeeCCccCCc-eeEEEEecC
Q psy14540        198 ------------------------VN------------EYTSSLSIATLSTGHSGNYTCVASNTVASDNH-SSNLRVNVP  240 (291)
Q Consensus       198 ------------------------~~------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~-~~~l~v~~~  240 (291)
                                              +.            .....|.|.++..+|+|.|+|.|.|..+.... .+.|.|..+
T Consensus       229 ~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~  308 (395)
T 1bih_A          229 VTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA  308 (395)
T ss_dssp             CEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEE
T ss_pred             cEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcC
Confidence                                    00            00127999999999999999999999877555 889999988


Q ss_pred             CCCCCCCcc-c-ccCCceEEEEEEeecCCCCceEEEEECCEEccCCee
Q psy14540        241 PHIGPFTFG-E-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDI  286 (291)
Q Consensus       241 p~~~~~~~~-~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~~~  286 (291)
                      |.+...+.. . +.+|+.++|.|.+ .|.|.|.+.|+++|..+..+.+
T Consensus       309 P~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~  355 (395)
T 1bih_A          309 PKYEQKPEKVIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLSGGRA  355 (395)
T ss_dssp             EEEEECCCSEEEECTTSCEEEECEE-EEESCCCCEEEETTEECCSSSE
T ss_pred             CccccCCCcceEecCCCeEEEEEEE-CcccCCeeEEEECCEECCCCce
Confidence            888776665 3 8999999999999 7899999999999999976543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=228.36  Aligned_cols=238  Identities=25%  Similarity=0.458  Sum_probs=170.0

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCC-CCCeEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV-EDSGIYQC   79 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C   79 (291)
                      .||.|...|.+..+.+|+.++|.|.+.+.|.+.+.|++++..+...++....   ......+.|.|.+++. .|+|.|+|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~---~~~~~~~~L~i~~~~~~~D~G~Y~C   81 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---FDESAGAVLRIQPLRTPRDENVYEC   81 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEE---ETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEE---ecCCCceEEEEecccccCCCeEEEE
Confidence            3899999999999999999999999998888999999999887654433211   1222346799999998 99999999


Q ss_pred             EEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCce-EEec
Q psy14540         80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI-TIRS  158 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~  158 (291)
                      .+.+..+.....+.|.|...+..+.........+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...... ....
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~  160 (304)
T 2yd9_A           82 VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIKQ  160 (304)
T ss_dssp             EEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEE-ECSSCCEEEEEETTEECCGGGGTTSEEE
T ss_pred             EEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEEC-ccCCCCeEEEEECCEECcCCCCcceEEe
Confidence            999988888888889998764333222233344556778899999999999 68899999999999887543210 0000


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC-ceeEEEE
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN-HSSNLRV  237 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~-~~~~l~v  237 (291)
                                                               .....|.|.++..+|+|.|+|.|.|..+... ....+.|
T Consensus       161 -----------------------------------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v  199 (304)
T 2yd9_A          161 -----------------------------------------LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV  199 (304)
T ss_dssp             -----------------------------------------CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -----------------------------------------CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEE
Confidence                                                     0123577777777788888888887765432 2234444


Q ss_pred             e---cCCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        238 N---VPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       238 ~---~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      .   .+|.+...+... +.+|+.++|.|.+ .|.|.|.|.|+++|..+...
T Consensus       200 ~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~l~~~  249 (304)
T 2yd9_A          200 RVQNVAPRFSILPMSHEIMPGGNVNITCVA-VGSPMPYVKWMQGAEDLTPE  249 (304)
T ss_dssp             ECCCEEEEEEECCCCBCCCTTCCEEEEEEE-EEESCCEEEEEETTEECSCS
T ss_pred             EeeccCCcEEecCCceEEcCCCeEEEEEEE-eeeCCCEEEEEECCEECCCc
Confidence            3   345555444444 8999999999999 88899999999999998654

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=1.8e-36  Score=242.63  Aligned_cols=264  Identities=23%  Similarity=0.381  Sum_probs=199.9

Q ss_pred             CCcceeecceeee---ecCCcEEEEEEecCCCCCeeEEEECCeecCCC---eeEeceEEeeccceEEEEEEeecCC-CCC
Q psy14540          2 HPQLIYKFIQQTL---QPGPPVSLKCIATGNPTPHISWKLDGYPLAGD---RFVMGQYMSLHGDVISHVNISSVRV-EDS   74 (291)
Q Consensus         2 ~p~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~-~d~   74 (291)
                      +|.|...|....+   .+|+.++|.|.+.+.|.+.+.|+++|..+...   ++..     . +   ..|.|.++.. .|+
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~-----~-~---~~L~i~~~~~~~D~   74 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL-----V-A---GDLVISNPVKAKDA   74 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEE-----E-T---TEEEEESCCHHHHC
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEe-----e-C---CeEEEecccccccC
Confidence            7899999988776   78999999999998888999999999988622   2211     1 1   2488999987 999


Q ss_pred             eEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC--C
Q psy14540         75 GIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS--D  151 (291)
Q Consensus        75 G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~--~  151 (291)
                      |.|+|.+.+..|.. +....+.|...+..+      ........+.+|+.+.|.|.+..+.|.+.+.|++++.++..  .
T Consensus        75 G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~------~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~  148 (382)
T 1cs6_A           75 GSYQCVATNARGTVVSREASLRFGFLQEFS------AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD  148 (382)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEEECCCC------SSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCC
T ss_pred             EEEEEEEEcCCcEEEecceEEEeecccccc------ccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccC
Confidence            99999999877653 334566666544221      12234567889999999999756778899999999876432  2


Q ss_pred             CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC-----ceEEE-----------------------------
Q psy14540        152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH-----SSNLR-----------------------------  197 (291)
Q Consensus       152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-----~~~~~-----------------------------  197 (291)
                      .+.....   ....|.|.++..+|.|.|+|.+.|..+....     ...+.                             
T Consensus       149 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v  225 (382)
T 1cs6_A          149 GRRFVSQ---TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMV  225 (382)
T ss_dssp             SSEEECT---TTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCE
T ss_pred             ceEEEec---CceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeE
Confidence            2222221   1346999999999999999999987632110     00000                             


Q ss_pred             --------------------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-
Q psy14540        198 --------------------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-  250 (291)
Q Consensus       198 --------------------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-  250 (291)
                                                .......|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|.+...+... 
T Consensus       226 ~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~  305 (382)
T 1cs6_A          226 TLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTE  305 (382)
T ss_dssp             EEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEE
T ss_pred             EEEEEEccCCCCEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccE
Confidence                                      00125678999999999999999999999888888899998888776555444 


Q ss_pred             ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        251 LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       251 ~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      +.+|+.++|.|.+ .|.|.+.|.|+++|..+...
T Consensus       306 ~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~  338 (382)
T 1cs6_A          306 ADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLASQ  338 (382)
T ss_dssp             EETTCCEEEECEE-EEESCCEEEEEETTEECCCC
T ss_pred             EcCCCeEEEEEEe-eeecCCEEEEEECCEECCCC
Confidence            8999999999999 88999999999999998654

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=8.6e-34  Score=247.62  Aligned_cols=263  Identities=30%  Similarity=0.514  Sum_probs=202.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ||.+...+....+.+|++++|.|.+.+.|.+.+.|+++|..+....              ..|.|.+++.+|+|.|+|.+
T Consensus       343 ~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~a  408 (816)
T 3dmk_A          343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--------------SVLRIESVKKEDKGMYQCFV  408 (816)
T ss_dssp             EEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS--------------SEEEESSCCGGGCEEEEEEE
T ss_pred             CCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC--------------CEEEEcCCCHHHCEEEEEEE
Confidence            3556667778889999999999999988899999999998876321              24889999999999999999


Q ss_pred             eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe----
Q psy14540         82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR----  157 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~----  157 (291)
                      .+..+.......+.|.....+|    .....+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+....+....    
T Consensus       409 ~n~~g~~~~~~~l~v~~~~~~p----~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~  483 (816)
T 3dmk_A          409 RNDRESAEASAELKLGGRFDPP----VIRQAFQEETMEPGPSVFLKCVA-GGNPTPEISWELDGKKIANNDRYQVGQYVT  483 (816)
T ss_dssp             ECSSCEEEECCEEECCCSSCCC----EEEEECCCEEECSSSCEEEEEEE-ECSSCCEEEEEETTEECCSCTTEEEEEEEC
T ss_pred             ECCCCcEEEEEEEEEccccCCC----ceEecCcceEEcCCCCEEEEEEE-ecCCCCEEEEEECCEECCCCCCcccccEEe
Confidence            9888877777777765433222    11222344678899999999998 68999999999999998776655432    


Q ss_pred             ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec-------------------------------------
Q psy14540        158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE-------------------------------------  200 (291)
Q Consensus       158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~-------------------------------------  200 (291)
                      ..+.....|.|..+..+|.|.|+|.+.|..|.......+.+..                                     
T Consensus       484 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~  563 (816)
T 3dmk_A          484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERD  563 (816)
T ss_dssp             TTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEET
T ss_pred             cCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEEC
Confidence            2333456799999999999999999999887655444443110                                     


Q ss_pred             -------------cceEEEEeeee-cCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCCCCcc--cccCCceEEEEEEe
Q psy14540        201 -------------YTSSLSIATLS-TGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGPFTFG--ELMEGVRTQVACVV  263 (291)
Q Consensus       201 -------------~~~~l~i~~~~-~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~--~~~~g~~v~l~C~~  263 (291)
                                   ...+|.|.++. ..|+|.|+|.|.|..+. .+..+.+.|..+|.+......  .+.+|+.++|.|.+
T Consensus       564 ~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~  643 (816)
T 3dmk_A          564 NRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSV  643 (816)
T ss_dssp             TEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBC
T ss_pred             CeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEE
Confidence                         14678888887 58999999999999864 455778888888776554332  28899999999999


Q ss_pred             ecCCCCceEEEEECCEEccC
Q psy14540        264 QSGDLPLSLQWYKNGLAISQ  283 (291)
Q Consensus       264 ~~~~p~~~v~W~~~~~~l~~  283 (291)
                      ..+.+++.|.|++||+.+..
T Consensus       644 ~~~~~~~~i~W~~~g~~l~~  663 (816)
T 3dmk_A          644 PGGDLPLNIDWTLDGQAISE  663 (816)
T ss_dssp             CCSSSCCEEEEEETTBCCCG
T ss_pred             eCCCCCCEEEEEECCeEcCC
Confidence            44555669999999998853

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=9.4e-33  Score=235.12  Aligned_cols=246  Identities=20%  Similarity=0.373  Sum_probs=188.4

Q ss_pred             eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc-e
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS-Q   88 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~   88 (291)
                      ...+..|+.+.|.|.+.+.+ +.+.|+++|..+.. .++...     ..  ...|.|.+++.+|+|.|+|.+.+..|. .
T Consensus       298 ~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~-----~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  369 (642)
T 1e07_A          298 SNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLS-----ND--NRTLTLLSVTRNDVGPYECGIQNELSVDH  369 (642)
T ss_pred             ceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEe-----CC--CCEEEEeccCcccCeeEEEEEeCCCCCcc
Confidence            34556688899999998865 68999999988762 232221     11  246999999999999999999988775 3


Q ss_pred             eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEE
Q psy14540         89 THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI  168 (291)
Q Consensus        89 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i  168 (291)
                      +..+.|.|...|..+.      ..+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..            ...|.|
T Consensus       370 s~~~~l~V~~~p~~~~------~~~~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~~~~------------~~~L~i  430 (642)
T 1e07_A          370 SDPVILNVLYGPDDPT------ISPSYTYYRPGVNLSLSCHA-ASNPPAQYSWLIDGNIQQH------------TQELFI  430 (642)
T ss_pred             eeeEEEEEEcCCCCCe------ecCCceEecCCCcEEEEEEc-CccCCCeEEEEECCEEcCC------------CceEEE
Confidence            4567788876553321      12334577899999999999 6899999999999987743            235899


Q ss_pred             eeCCCCCceeEEEEEEecCCCCCCce--EEEE------------------------------------------------
Q psy14540        169 ATLSTGHSGNYTCVASNTVASDNHSS--NLRV------------------------------------------------  198 (291)
Q Consensus       169 ~~~~~~d~g~y~C~~~~~~~~~~~~~--~~~~------------------------------------------------  198 (291)
                      ..+...|.|.|+|.|.|..|......  .+.+                                                
T Consensus       431 ~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~~~~~i~W~~~g~~l~~~  510 (642)
T 1e07_A          431 SNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVS  510 (642)
T ss_pred             ccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCCCCcEEEEEECCEeCCCC
Confidence            99999999999999999987654432  2211                                                


Q ss_pred             -----eccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEecCCC-CCCCCccc-ccCCceEEEEEEeecCCCCc
Q psy14540        199 -----NEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNVPPH-IGPFTFGE-LMEGVRTQVACVVQSGDLPL  270 (291)
Q Consensus       199 -----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~~p~-~~~~~~~~-~~~g~~v~l~C~~~~~~p~~  270 (291)
                           ......|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|. +...+... +.+|+.++|.|.+ .|.|++
T Consensus       511 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p  589 (642)
T 1e07_A          511 PRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHS-ASNPSP  589 (642)
T ss_pred             CcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEe-ccCCCC
Confidence                 0114589999999999999999999998764 4578888886554 33333333 8999999999999 899999


Q ss_pred             eEEEEECCEEccCC
Q psy14540        271 SLQWYKNGLAISQP  284 (291)
Q Consensus       271 ~v~W~~~~~~l~~~  284 (291)
                      .|+|++||.++...
T Consensus       590 ~v~W~~~g~~i~~~  603 (642)
T 1e07_A          590 QYSWRINGIPQQHT  603 (642)
T ss_pred             eEEEEECCEECccC
Confidence            99999999998754

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=6.6e-33  Score=230.62  Aligned_cols=274  Identities=19%  Similarity=0.335  Sum_probs=184.8

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCe--ecCCCee--------EeceEEeeccceEEEEEEeecCCCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY--PLAGDRF--------VMGQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      ++..|..+.+.+|++++|.|.+.+.+.+.+.|++++.  .+....+        ...+.........+.|.|.+++.+|+
T Consensus         3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   82 (523)
T 2rcj_C            3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE   82 (523)
T ss_pred             ccccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence            3455778899999999999999888888999999742  1110000        00111122234456899999999999


Q ss_pred             eEEEEEEeCCCCc---eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--ceeEEeECCEecc
Q psy14540         75 GIYQCTATNRVGS---QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LTISWLKNGLPIL  149 (291)
Q Consensus        75 G~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~  149 (291)
                      |.|+|.+.+..+.   ....+.|.|...+..++.   ....+....+.+|+.+.|.|.+. +.|+  +.+.|+++|..+.
T Consensus        83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~---~~~~~~~~~~~~g~~v~l~C~~~-g~~p~~~~v~W~k~g~~l~  158 (523)
T 2rcj_C           83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPT---VTLFPPSSEELQANKATLVCLIS-DFYPGAVTVAWKADGSPVK  158 (523)
T ss_pred             EEEEEEEccCCCccccccCceEEEeccCCCcCCe---EEecCCcccccCCCceEEEEEec-cccCCceEEEEecCCCCCC
Confidence            9999999986542   234567777543322111   11222334556799999999994 5554  4999999998876


Q ss_pred             CCCceEEe---ccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE---------------------------
Q psy14540        150 SDAEITIR---SSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR---------------------------  197 (291)
Q Consensus       150 ~~~~~~~~---~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~---------------------------  197 (291)
                      ........   ..+..  ...|.|..+..+|.|.|+|.|.|..+.......+.                           
T Consensus       159 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~  238 (523)
T 2rcj_C          159 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAA  238 (523)
T ss_pred             CceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceE
Confidence            54322211   11111  24699999999999999999999776544333210                           


Q ss_pred             ----Eec---------------------------c------ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC
Q psy14540        198 ----VNE---------------------------Y------TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP  240 (291)
Q Consensus       198 ----~~~---------------------------~------~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~  240 (291)
                          +..                           .      .+.|.|..+..+| |.|+|.|.|..+.......|.+...
T Consensus       239 l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~  317 (523)
T 2rcj_C          239 LGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSL  317 (523)
T ss_pred             EEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcC
Confidence                000                           0      1278888888899 9999999999988777777766555


Q ss_pred             CCCCCCC--ccc-ccCCceEEEEEEeecCCC-C---ceEEEEECCEEccCC
Q psy14540        241 PHIGPFT--FGE-LMEGVRTQVACVVQSGDL-P---LSLQWYKNGLAISQP  284 (291)
Q Consensus       241 p~~~~~~--~~~-~~~g~~v~l~C~~~~~~p-~---~~v~W~~~~~~l~~~  284 (291)
                      |.+...+  ... +.+|+.+.|.|.+ .|.| +   +.|+|+|||.++...
T Consensus       318 P~~~~~~p~~~~~v~~g~~~~l~C~~-~g~~p~~~~~~v~W~k~g~~l~~~  367 (523)
T 2rcj_C          318 PSVFLFPPKPKDTLMISRTPEVTCVV-VDVSHEDPQVKFNWYVDGVQVHNA  367 (523)
T ss_pred             ceEEecCCCchhhcccCCceEEEEEE-ecccCCCCceEEEEEECCeEccCC
Confidence            5543222  222 7889999999999 6643 2   599999999988544

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.6e-32  Score=233.74  Aligned_cols=254  Identities=20%  Similarity=0.382  Sum_probs=191.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|... ....+.+|+.+.|.|.+.+ |.+.+.|+++|..+. ..++...     .  ....|.|.+++..|+|.|+|.
T Consensus       112 ~p~i~~~-~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~~~-----~--~~~~L~i~~~~~~d~G~Y~C~  182 (642)
T 1e07_A          112 KPSISSN-NSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLS-----N--GNRTLTLFNVTRNDTASYKCE  182 (642)
T ss_pred             CCcEEcc-CceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCceEEc-----C--CCCEEEEeCCCcccCeeEEEE
Confidence            3444432 3356889999999999987 888999999998887 3333221     1  124699999999999999999


Q ss_pred             EeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540         81 ATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        81 ~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      +.+..+. .+..+.|.|...|..+.      ..+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..         
T Consensus       183 a~n~~~~~~s~~~~l~V~~~p~~~~------~~~~~~~~~~G~~~~l~C~~-~g~p~~~i~W~~~g~~i~~---------  246 (642)
T 1e07_A          183 TQNPVSARRSDSVILNVLYGPDAPT------ISPLNTSYRSGENLNLSCHA-ASNPPAQYSWFVNGTFQQS---------  246 (642)
T ss_pred             EecCCCCcccceEEEEEEeCCCCcE------EecCCcccccCCEEEEEEEc-CCCCCcEEEEEECCeEccc---------
Confidence            9987765 34567788876553321      12234567899999999999 7999999999999988732         


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc--eEEE----------------------------------------
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS--SNLR----------------------------------------  197 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~--~~~~----------------------------------------  197 (291)
                         ...|.|.++..+|.|.|+|.+.|..+.....  ..+.                                        
T Consensus       247 ---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p~~v~W~  323 (642)
T 1e07_A          247 ---TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWW  323 (642)
T ss_pred             ---CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCCccEEEE
Confidence               3458999999999999999999987654321  1111                                        


Q ss_pred             -------------EeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCC-CCcc-cccCCceEEEEE
Q psy14540        198 -------------VNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGP-FTFG-ELMEGVRTQVAC  261 (291)
Q Consensus       198 -------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~-~~~~-~~~~g~~v~l~C  261 (291)
                                   +......|.|.++..+|+|.|+|.|.|..+. .+..+.|.|..+|.... .+.. .+.+|+.++|.|
T Consensus       324 ~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C  403 (642)
T 1e07_A          324 VNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSC  403 (642)
T ss_pred             ECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEE
Confidence                         0011467899999999999999999998865 45667888887665432 2222 388999999999


Q ss_pred             EeecCCCCceEEEEECCEEccCC
Q psy14540        262 VVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       262 ~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      .+ .+.|++.++|++||..+..+
T Consensus       404 ~~-~g~p~~~i~W~~~g~~~~~~  425 (642)
T 1e07_A          404 HA-ASNPPAQYSWLIDGNIQQHT  425 (642)
T ss_pred             Ec-CccCCCeEEEEECCEEcCCC
Confidence            99 88999999999999998654

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=6.6e-32  Score=227.58  Aligned_cols=266  Identities=20%  Similarity=0.279  Sum_probs=194.0

Q ss_pred             eeecceeeeecCCcEEEEEEecCCCC---CeeEEEECCeecC------CC-----eeEeceEEe-eccceEEEEEEeecC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLA------GD-----RFVMGQYMS-LHGDVISHVNISSVR   70 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~------~~-----~~~~~~~~~-~~~~~~~~l~i~~~~   70 (291)
                      +..|..+.+.+|++++|.|.+.+.+.   ..+.|+|++..+.      ..     .+....... ....+.+.|.|.+++
T Consensus         4 i~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~   83 (585)
T 2ocw_A            4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS   83 (585)
T ss_pred             ccCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence            44577789999999999999987653   3799999875331      00     000000011 113445789999999


Q ss_pred             CCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540         71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  150 (291)
Q Consensus        71 ~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~  150 (291)
                      .+|+|.|+|.+.+..+.....+.|.|...|..       ...+....+.+|+.+.|.|.+..+.|.+.+.|++++.....
T Consensus        84 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~-------~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~  156 (585)
T 2ocw_A           84 QDDSGRYKCGLGINSRGLSFDVSLEVSQGPGL-------LNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV  156 (585)
T ss_pred             cccCEEEEEEcccCCCCceEEEEEEEecCccc-------cCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCce
Confidence            99999999999988777778888888876632       23345677889999999999954566788999998754211


Q ss_pred             -------------CCceEEeccC--CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec---------------
Q psy14540        151 -------------DAEITIRSSG--EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE---------------  200 (291)
Q Consensus       151 -------------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~---------------  200 (291)
                                   ..+..+...+  .+...|.|.++..+|.|.|+|.+.|..+.....+.+.+..               
T Consensus       157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~  236 (585)
T 2ocw_A          157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVT  236 (585)
T ss_pred             EEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEE
Confidence                         1223332222  2345799999999999999999999887655444443110               


Q ss_pred             -------------------c------------------------------ce--EEEEeeeecCCCeeEEEEeeeCCccC
Q psy14540        201 -------------------Y------------------------------TS--SLSIATLSTGHSGNYTCVASNTVASD  229 (291)
Q Consensus       201 -------------------~------------------------------~~--~l~i~~~~~~~~g~y~C~~~~~~~~~  229 (291)
                                         .                              ..  .|.|.++..+|+|.|+|.|.|.....
T Consensus       237 l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~  316 (585)
T 2ocw_A          237 FHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ  316 (585)
T ss_pred             EEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCcc
Confidence                               0                              11  68899999999999999999964333


Q ss_pred             ----CceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCCceE----EEEE--CCE
Q psy14540        230 ----NHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSL----QWYK--NGL  279 (291)
Q Consensus       230 ----~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v----~W~~--~~~  279 (291)
                          ...+.|.|..+|.+...+... +.+|+.++|.|.+ .+.|.+.+    .|++  ||.
T Consensus       317 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~-~~~p~p~i~~w~~W~~~~~g~  376 (585)
T 2ocw_A          317 EGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPY-NRKESKSIKYWCLWEGAQNGR  376 (585)
T ss_pred             ccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEec-CCCCCccEEEEEEEEccCCCC
Confidence                278889999888887766555 8899999999999 88888876    8999  887

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=100.00  E-value=1e-32  Score=229.54  Aligned_cols=277  Identities=18%  Similarity=0.268  Sum_probs=179.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCC--CeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT--PHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.+...+....+.+|+.++|.|.+.+.+.  +.+.|+++|..+..............+  ...+.|.|.+++.+|+|.|
T Consensus       114 ~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  193 (523)
T 2rcj_C          114 NPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSY  193 (523)
T ss_pred             CCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceE
Confidence            566776676667788999999999998654  389999999887633211101000111  1235799999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEE
Q psy14540         78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITI  156 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~  156 (291)
                      +|.+.+..+.....+.+.+......++  ... .......+.+|+.+.|.|.+.+..|.+ .+.|++++..+........
T Consensus       194 ~C~a~n~~~~~~~~~~~~~~~~~~~~P--~v~-~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~  270 (523)
T 2rcj_C          194 SCQVTHEGSTVEKTVAPTECSASTKGP--SVF-PLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAV  270 (523)
T ss_pred             EEEEEecCcccccceeeeecCCCCcCC--EEE-ecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcE
Confidence            999998877655554433222111111  111 112223457899999999994344767 8999999987543211111


Q ss_pred             e-ccCC--ceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE-----------------------------Eec----
Q psy14540        157 R-SSGE--YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR-----------------------------VNE----  200 (291)
Q Consensus       157 ~-~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~-----------------------------~~~----  200 (291)
                      . ..+.  ....|.|..+..+| |.|+|.|.|..|.......+.                             +..    
T Consensus       271 ~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~  349 (523)
T 2rcj_C          271 LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHE  349 (523)
T ss_pred             ecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCC
Confidence            1 1111  13579999999999 999999999887643322211                             000    


Q ss_pred             --------------------------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEE----EecCCCCC
Q psy14540        201 --------------------------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR----VNVPPHIG  244 (291)
Q Consensus       201 --------------------------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~----v~~~p~~~  244 (291)
                                                      ..+.|.|..+..+|+|.|+|.|.|..+.......+.    +..+|.+.
T Consensus       350 ~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~  429 (523)
T 2rcj_C          350 DPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVY  429 (523)
T ss_pred             CCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCEEE
Confidence                                            012356666777899999999999876655554555    34566655


Q ss_pred             CCCccc-ccCCceEEEEEEeecCCCCc--eEEEEECCEEccC
Q psy14540        245 PFTFGE-LMEGVRTQVACVVQSGDLPL--SLQWYKNGLAISQ  283 (291)
Q Consensus       245 ~~~~~~-~~~g~~v~l~C~~~~~~p~~--~v~W~~~~~~l~~  283 (291)
                      ..+... ...|+.++|.|.+ .|.|++  .|.|+|||.++..
T Consensus       430 ~~~~~~~~~~~~~~~l~C~~-~g~~p~~~~v~W~k~g~~~~~  470 (523)
T 2rcj_C          430 TLPPSREEMTKNQVSLTCLV-KGFYPSDIAVEWESNGQPENN  470 (523)
T ss_pred             EeCCChHHccCCceEEEEEE-EeeECCCCEEEEEECCEECCC
Confidence            443333 2234449999999 665544  9999999999864

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.7e-33  Score=229.99  Aligned_cols=262  Identities=14%  Similarity=0.199  Sum_probs=187.2

Q ss_pred             CCcce-eecceeeeecCCcEEEEEEecCCCCC---eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLI-YKFIQQTLQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.+. ..+.+..+.+|+.+.|.|.+.+.+.+   .|.|+|++..+.....       ........|.|.+++.+|+|.|
T Consensus        85 ~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~-------~~~~~~~~L~i~~~~~~d~G~Y  157 (450)
T 1z7z_I           85 TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-------VGEPAEVTTTVLVRRDHHGANF  157 (450)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC-------CTTTEEEEEEEECCSSCSSCEE
T ss_pred             CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccc-------cccccceEEEEEeeccccCceE
Confidence            45444 56666789999999999999987777   8999999987752221       1122335799999999999999


Q ss_pred             EEEEeCCCCcee--------eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEEeECCEe
Q psy14540         78 QCTATNRVGSQT--------HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLP  147 (291)
Q Consensus        78 ~C~~~~~~~~~~--------~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~  147 (291)
                      +|.+.+..+...        ....+.|...+..++   .. .  ....+.+|+.+.|.|.+....|  .+.+.|++++..
T Consensus       158 ~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p---~~-~--~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~  231 (450)
T 1z7z_I          158 SCRTELDLRPQGLELFENTSAPYQLQTFVLPATPP---QL-V--SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR  231 (450)
T ss_dssp             EEEEEEECGGGTSCEEEEECCCEECEECCCCSSCC---EE-E--CCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEE
T ss_pred             EEEEEcccCCCCceEEeeccCccceeeeccCCCCC---Ee-c--CceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEe
Confidence            999998765322        333445544321110   11 0  1157889999999999953337  789999999998


Q ss_pred             ccCCCceEEeccCCceEEEEEeeCCCCCce--eEEEEEEecCCCCCCceEEEEec-------------------------
Q psy14540        148 ILSDAEITIRSSGEYTSSLSIATLSTGHSG--NYTCVASNTVASDNHSSNLRVNE-------------------------  200 (291)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g--~y~C~~~~~~~~~~~~~~~~~~~-------------------------  200 (291)
                      +..  .....  ...........+..+|.|  .|+|.+.|..+.......+.+..                         
T Consensus       232 ~~~--~~~~~--~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~  307 (450)
T 1z7z_I          232 LNP--TVTYG--NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA  307 (450)
T ss_dssp             CCC--EEEEE--TTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC
T ss_pred             CCc--eEEec--CCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEEEEec
Confidence            765  22222  111111112277899999  99999999877665444443322                         


Q ss_pred             -----------------cceEEEEeeeecCCCeeEEEEeeeCCc----cCCceeEEEEecCCCCCCCCc--c-cccCCce
Q psy14540        201 -----------------YTSSLSIATLSTGHSGNYTCVASNTVA----SDNHSSNLRVNVPPHIGPFTF--G-ELMEGVR  256 (291)
Q Consensus       201 -----------------~~~~l~i~~~~~~~~g~y~C~~~~~~~----~~~~~~~l~v~~~p~~~~~~~--~-~~~~g~~  256 (291)
                                       ....|.|..+..+|+|.|+|.|.|..+    .....+.|.|..+|.+.....  . .+.+|+.
T Consensus       308 ~p~p~i~W~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~  387 (450)
T 1z7z_I          308 HPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQ  387 (450)
T ss_dssp             ----------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCE
T ss_pred             CCCCEeEECCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCe
Confidence                             234688999999999999999997654    334778888888887776642  2 3889999


Q ss_pred             EEEEEEeecCCCCceEEEEECCEEc
Q psy14540        257 TQVACVVQSGDLPLSLQWYKNGLAI  281 (291)
Q Consensus       257 v~l~C~~~~~~p~~~v~W~~~~~~l  281 (291)
                      ++|.|.+ .|.|.|.|.|+|+|..+
T Consensus       388 ~~l~C~~-~g~P~p~i~W~~~g~~~  411 (450)
T 1z7z_I          388 QTPMCQA-WGNPLPELKCLKDGTFP  411 (450)
T ss_dssp             ECCCCCC-EEESCCEEEEEETTTEE
T ss_pred             EEEEEec-ccCCCCcEEEEECCccc
Confidence            9999999 89999999999998744

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=1.7e-33  Score=234.27  Aligned_cols=253  Identities=18%  Similarity=0.232  Sum_probs=193.2

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .||.|...+....+.+|+.++|.|.+.+    .+.|++++..+.   .         .....+|.|.+++.+|+|.|+|.
T Consensus        35 ~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~---~---------~~~~~~L~I~~~~~~D~G~Y~C~   98 (524)
T 2ec8_A           35 SPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET---N---------ENKQNEWITEKAEATNTGKYTCT   98 (524)
T ss_dssp             CCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC---E---------EECSSEEEESSCCSTTCEEEEEE
T ss_pred             CCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc---c---------cCccceEEEcccchhhCEEEEEe
Confidence            3788887778889999999999999876    899999987652   0         11225699999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE-CCEeccCCCceEEecc
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSS  159 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~  159 (291)
                      +.+  | ....+.|.|..++..   .    ..+....+.+|+.+.|.|.+ .+.+.+.+.|++ +|..+....+......
T Consensus        99 a~n--g-~~~~~~l~V~~p~~~---~----~~~~~~~v~~G~~v~l~C~~-~~~~~~~v~W~~~~g~~l~~~~~~~~~~~  167 (524)
T 2ec8_A           99 NKH--G-LSNSIYVFVRDPAKL---F----LVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPK  167 (524)
T ss_dssp             ETT--S-CEEEEEEECCCSSCS---B----CCCCCCCEETTSCEEECCCB-SCCCCSCEEEECSSSCCCCSSCEEEEETT
T ss_pred             ecC--C-cceEEEEEECCCCcc---c----ccccceEEEcCCeEEEECcC-CCCccceEEEEccCCcCcCCCCceeECCC
Confidence            987  4 356666666643311   1    33445678899999999999 576678999998 7887766555544432


Q ss_pred             CCceEEEEEeeCCCCCce-eEEEEEEecCCCCCC-ceEEEEe--------------------------------------
Q psy14540        160 GEYTSSLSIATLSTGHSG-NYTCVASNTVASDNH-SSNLRVN--------------------------------------  199 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~-~~~~~~~--------------------------------------  199 (291)
                          ..|.|..+..+|.| .|+|.+.|..+.... .+.+.+.                                      
T Consensus       168 ----~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~  243 (524)
T 2ec8_A          168 ----AGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY  243 (524)
T ss_dssp             ----TEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCE
T ss_pred             ----ccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEE
Confidence                36999999999999 999999987664422 2222110                                      


Q ss_pred             --------------------------ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc----c
Q psy14540        200 --------------------------EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF----G  249 (291)
Q Consensus       200 --------------------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~----~  249 (291)
                                                .....|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|.+...+.    .
T Consensus       244 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~  323 (524)
T 2ec8_A          244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTV  323 (524)
T ss_dssp             EEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEE
T ss_pred             EEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceE
Confidence                                      1136788899999999999999999998888899999998887766543    2


Q ss_pred             cccCCceEEEEEEeecCCCCce-EEEEECCEEccCCe
Q psy14540        250 ELMEGVRTQVACVVQSGDLPLS-LQWYKNGLAISQPD  285 (291)
Q Consensus       250 ~~~~g~~v~l~C~~~~~~p~~~-v~W~~~~~~l~~~~  285 (291)
                      .+.+|+.++|.|.+ .|.|.|. +.|+++|..+....
T Consensus       324 ~v~~G~~v~l~C~~-~g~P~p~~v~W~k~g~~~~~~~  359 (524)
T 2ec8_A          324 FVNDGENVDLIVEY-EAFPKPEHQQWIYMNRTFTDKW  359 (524)
T ss_dssp             EECTTCCEEEEEEE-EEESCCCEEEEESSSCBCSSSB
T ss_pred             EEcCCCcEEEEEEE-eecCCCcEEEEEECCeeccCCc
Confidence            38999999999999 8889988 99999999986553

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=9.4e-33  Score=212.96  Aligned_cols=229  Identities=21%  Similarity=0.362  Sum_probs=167.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEE-CCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKL-DGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      ||.|...|.+..+.+|+.+.|.|.+.+.+ .+.+.|++ +|..+...  ++...    ..+...+.|.|.+++.+|+|.|
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~----~~~~~~~~L~i~~~~~~D~G~Y   77 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV----WNDDDSSTLTIYNANIDDAGIY   77 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEE----EEETTEEEEEECSCCGGGCEEE
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEE----EcCCCeEEEEEecCCCCCCEEE
Confidence            78899999999999999999999999865 68999999 77766622  22221    1223457799999999999999


Q ss_pred             EEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540         78 QCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI  156 (291)
Q Consensus        78 ~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~  156 (291)
                      +|.+.+..+. ....+.+.|...+       .....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+........
T Consensus        78 ~C~~~n~~g~~~~~~~~l~v~~~~-------~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~  149 (291)
T 1qz1_A           78 KCVVTAEDGTQSEATVNVKIFQKL-------MFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRF  149 (291)
T ss_dssp             EEEEECTTSCEEEEEEEEEEECCS-------EEEECCSSEEEETTSCEEECCEE-ECSSCCEEEEEETTSCSSTTCCTTE
T ss_pred             EEEEEcCCCCeeEEEEEEEeeccc-------cccCCCCcccccCCCeEEEEEEe-ccCCCCEEEEEECCEEcccCCCceE
Confidence            9999987753 4566777776544       12233445678899999999999 5888899999999987643321110


Q ss_pred             eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc--CCceeE
Q psy14540        157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS--DNHSSN  234 (291)
Q Consensus       157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~--~~~~~~  234 (291)
                      ..                                         .....|.|.++..+|+|.|+|.+.|..+.  ....+.
T Consensus       150 ~~-----------------------------------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~  188 (291)
T 1qz1_A          150 IV-----------------------------------------LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ  188 (291)
T ss_dssp             EE-----------------------------------------CTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEE
T ss_pred             EE-----------------------------------------ccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEE
Confidence            00                                         01234667777777788888888775522  334566


Q ss_pred             EEEecCCCCCCCCcc---cccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        235 LRVNVPPHIGPFTFG---ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       235 l~v~~~p~~~~~~~~---~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      +.|..+|.+......   .+.+|+.++|.|.+ .|.|.|.+.|+++|..+...
T Consensus       189 l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~g~~~~~~  240 (291)
T 1qz1_A          189 VIVNVPPTVQARQSIVNATANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIENE  240 (291)
T ss_dssp             EEEEEEEEEEESCSEEEEETTSCCCEEEEEEE-EEESCCEEEEEETTEECCCC
T ss_pred             EEEecCCcccccccccccccccCceEEEEEEE-EEeCCCcEEEEECCEECcCC
Confidence            677777766544332   38899999999999 88999999999999998655

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=1.4e-32  Score=227.30  Aligned_cols=255  Identities=11%  Similarity=0.114  Sum_probs=169.7

Q ss_pred             eeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      +..+.+..|.+|++++|.|.+.+.+...+.|++++..+.. ..+.      .......+|.|.+++..|+|.|+|.+.+.
T Consensus        52 ~~~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~------~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~  125 (527)
T 3qs9_E           52 VYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD------LQNRGVVSMVILKMTETQAGEYLLFIQSE  125 (527)
T ss_dssp             ----CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC-
T ss_pred             eeeeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccC------CCcceEEEEEECcCChhhCeeEEEEEEec
Confidence            3445578899999999999998877889999999887652 2221      11223466999999999999999999988


Q ss_pred             CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceE
Q psy14540         85 VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS  164 (291)
Q Consensus        85 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                      .+.......+.|.  +...   .   ..........|+.+.|.|.+ .|.|.|.+.|++++..+......     .....
T Consensus       126 ~~~~~~~~~v~v~--~~~~---~---~~~~p~~~~~~~~~~L~C~a-~G~P~P~i~W~~~~~~~~~~~~~-----~~~~~  191 (527)
T 3qs9_E          126 ATNYTILFTVSIR--NTLL---Y---TLRRPYFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCKEE-----SPAVV  191 (527)
T ss_dssp             -CEEEEEEEEEEC-------------CEEEEEEEECSSSSCEEEEE-EESSCCEEEEEEC------------------CE
T ss_pred             cccEEEEEEEEEC--Ccee---e---ccCCCcEEecCCceEEEEEE-ceecCCeEEEEECCCCCcccccc-----CCcEE
Confidence            7766655555554  2111   0   11112334567788999999 79999999999988765321100     00111


Q ss_pred             EEEEeeCCCCCceeEEEEEEecCCCCCCc-eEEE-------------------------Ee-------------------
Q psy14540        165 SLSIATLSTGHSGNYTCVASNTVASDNHS-SNLR-------------------------VN-------------------  199 (291)
Q Consensus       165 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~~~-------------------------~~-------------------  199 (291)
                      ......+...|.|.|+|.|.|..|..... +.+.                         +.                   
T Consensus       192 ~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~  271 (527)
T 3qs9_E          192 KKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE  271 (527)
T ss_dssp             EECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCCSCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCG
T ss_pred             EEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCccCCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCC
Confidence            12223345789999999999987754332 2222                         00                   


Q ss_pred             ---------------ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc---ccccCCceEEEEE
Q psy14540        200 ---------------EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF---GELMEGVRTQVAC  261 (291)
Q Consensus       200 ---------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~g~~v~l~C  261 (291)
                                     .....|.|.++..+|+|.|+|.|.|.   ....+.|.|..+|.+...+.   ..+.+|+.+.|.|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C  348 (527)
T 3qs9_E          272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV  348 (527)
T ss_dssp             GGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEE
T ss_pred             CceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEE
Confidence                           00134899999999999999999988   56777888887776544332   2288999999999


Q ss_pred             EeecCCCCceEEEEECCEEccCC
Q psy14540        262 VVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       262 ~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      .+ .|.|.|.|+|+|||..|...
T Consensus       349 ~~-~g~P~p~i~W~k~g~~l~~~  370 (527)
T 3qs9_E          349 RF-KAYPQIRCTWTFSRKSFPCE  370 (527)
T ss_dssp             EE-EEESCCEEEEEETTEEEECB
T ss_pred             EE-EecCCCEEEEEECCEECcCC
Confidence            99 88999999999999999554

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=100.00  E-value=2.5e-31  Score=224.06  Aligned_cols=266  Identities=17%  Similarity=0.225  Sum_probs=187.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC--------------CCeeEeceEEeeccceEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA--------------GDRFVMGQYMSLHGDVISHVNI   66 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~i   66 (291)
                      +|.|...+....+.+|+.+.|.|.+.+ .+.+.+.|++++....              ..+....  ........++|.|
T Consensus       112 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~~L~I  189 (585)
T 2ocw_A          112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLD--IQGTGQLLFSVVI  189 (585)
T ss_pred             CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEE--eccCCCcEEEEEE
Confidence            677888888889999999999999986 4467799999875321              0111110  0111223467999


Q ss_pred             eecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEe-EC
Q psy14540         67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWL-KN  144 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~-~~  144 (291)
                      .+++.+|+|.|+|.+.+..+.....+.|.|...+            +..+.+.+|+.+.|.|.+....|. +.+.|+ ++
T Consensus       190 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~------------p~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~  257 (585)
T 2ocw_A          190 NQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE------------PELVYEDLRGSVTFHCALGPEVANVAKFLCRQSS  257 (585)
T ss_pred             ccCChhHCeEEEEEeccCCccccceEEEEEccCC------------CceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCC
Confidence            9999999999999999888888888888887543            123457799999999997323333 788997 77


Q ss_pred             CEe---ccC---------CCceEEecc-CCceEEEEEeeCCCCCceeEEEEEEecCCCCC----CceEEE----------
Q psy14540        145 GLP---ILS---------DAEITIRSS-GEYTSSLSIATLSTGHSGNYTCVASNTVASDN----HSSNLR----------  197 (291)
Q Consensus       145 ~~~---~~~---------~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~----~~~~~~----------  197 (291)
                      +..   +..         ..+..+... ..+...|.|..+..+|.|.|+|.|.|..+...    ..+.+.          
T Consensus       258 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~  337 (585)
T 2ocw_A          258 GENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRS  337 (585)
T ss_pred             CCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccC
Confidence            732   111         122222211 12334799999999999999999999533221    222222          


Q ss_pred             -------------------------E----ec-c--c-------------------------------eEEEEeeeecCC
Q psy14540        198 -------------------------V----NE-Y--T-------------------------------SSLSIATLSTGH  214 (291)
Q Consensus       198 -------------------------~----~~-~--~-------------------------------~~l~i~~~~~~~  214 (291)
                                               +    .- .  +                               .+|.|.++..+|
T Consensus       338 ~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D  417 (585)
T 2ocw_A          338 PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRD  417 (585)
T ss_pred             CcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhh
Confidence                                     1    10 0  0                               127888899999


Q ss_pred             CeeEEEEeeeCCccCCceeEEEEecC-CCCCCCCcccccCCceEEEEEEeec---CCCCceEEEEECCEEcc
Q psy14540        215 SGNYTCVASNTVASDNHSSNLRVNVP-PHIGPFTFGELMEGVRTQVACVVQS---GDLPLSLQWYKNGLAIS  282 (291)
Q Consensus       215 ~g~y~C~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~g~~v~l~C~~~~---~~p~~~v~W~~~~~~l~  282 (291)
                      +|.|+|.| |..+.....+.|.|..+ |.+..+....+.+|+.++|.|.+..   +.|.+.|.|+|||..+.
T Consensus       418 ~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~  488 (585)
T 2ocw_A          418 AGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQAL  488 (585)
T ss_pred             CEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceee
Confidence            99999999 88888888899998764 5555433334999999999999932   67889999999998773

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=5.9e-32  Score=208.49  Aligned_cols=226  Identities=24%  Similarity=0.427  Sum_probs=166.2

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE-CCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      .+|.|...+.+..+.+|+.++|.|.+.+.|. .+.|++ ++..+. ..++..     ......+.|.|.+++..|+|.|+
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~D~G~Y~   76 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVV-----QKEGVRSRLTIYNANIEDAGIYR   76 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEE-----EEETTEEEEEECSCCGGGCEEEE
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEE-----ecCCCEEEEEEccCCcccCEEEE
Confidence            3789999999999999999999999998764 899999 676665 233322     12223567999999999999999


Q ss_pred             EEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceE
Q psy14540         79 CTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EIT  155 (291)
Q Consensus        79 C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~  155 (291)
                      |.+.+..+.. ...+.+.|...+...       ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....  +..
T Consensus        77 C~~~n~~g~~~~~~~~l~v~~~~~~~-------~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~  148 (291)
T 2wim_A           77 CQATDAKGQTQEATVVLEIYQKLTFR-------EVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFA  148 (291)
T ss_dssp             EEEECSSSCEEEEEEEEEEECCCBCC-------SCCCSEEEETTSCEEECCCC-BCSSCCEEEEECC----CBCCCSSEE
T ss_pred             EEEecccCceEEEEEEEEecCCcceE-------eCCCChhhcCCCCEEEEEEE-ccCCCCEEEEEECCccccccCCceEE
Confidence            9999877764 456677776654221       22344678899999999999 688999999999987764321  111


Q ss_pred             EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc--CCcee
Q psy14540        156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS--DNHSS  233 (291)
Q Consensus       156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~--~~~~~  233 (291)
                      ..                                           ....|.|.++..+|+|.|+|.+.+..+.  ....+
T Consensus       149 ~~-------------------------------------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~  185 (291)
T 2wim_A          149 ML-------------------------------------------ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDI  185 (291)
T ss_dssp             EC-------------------------------------------TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEE
T ss_pred             Ec-------------------------------------------cCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeE
Confidence            10                                           1234777777788888888888876633  33556


Q ss_pred             EEEEecCCCCCCCCcc---cccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        234 NLRVNVPPHIGPFTFG---ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       234 ~l~v~~~p~~~~~~~~---~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      .+.+..+|.+......   .+.+|+.++|.|.+ .+.|.+.+.|++||..+...
T Consensus       186 ~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~  238 (291)
T 2wim_A          186 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEEN  238 (291)
T ss_dssp             EEEEEBCCCCBCSCSEEECCSSSCCEEEEECBC-CCBSCCEEEEEETTEECCCT
T ss_pred             EEEeccCCccccCcccccceecCCCeEEEEEEe-ecCCCCeEEEEECCEECcCC
Confidence            7777888887665542   38899999999999 88999999999999998643

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=4.5e-33  Score=231.66  Aligned_cols=262  Identities=22%  Similarity=0.292  Sum_probs=188.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE-CCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCe-EEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSG-IYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~   78 (291)
                      ||.+...+....+.+|+.+.|.|.+.+.+.+.+.|++ +|..+.. .++..     ...   ..|.|.+++..|+| .|+
T Consensus       114 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~-----~~~---~~L~i~~~~~~d~G~~Y~  185 (524)
T 2ec8_A          114 PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIP-----DPK---AGIMIKSVKRAYHRLCLH  185 (524)
T ss_dssp             SSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEE-----ETT---TEEEEESCCGGGTTCEEE
T ss_pred             CCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeE-----CCC---ccEEEeccchhhCCceEE
Confidence            4555567777889999999999999886668999998 7877763 22222     111   24899999999999 999


Q ss_pred             EEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce-eEEeECCEec--cCCCce
Q psy14540         79 CTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPI--LSDAEI  154 (291)
Q Consensus        79 C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~--~~~~~~  154 (291)
                      |.+.+..+.. +..+.|.|...+..+   ......+....+.+|+.+.|.|.+ .+.|.+. +.|++++..+  ......
T Consensus       186 C~a~n~~~~~~s~~~~l~V~~~~~~~---p~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~~i~W~~~~~~~~~~~~~~~  261 (524)
T 2ec8_A          186 CSVDQEGKSVLSEKFILKVRPAFKAV---PVVSVSKASYLLREGEEFTVTCTI-KDVSSSVYSTWKRENSQTKLQEKYNS  261 (524)
T ss_dssp             EEEC----CCCCCCEECCEECCCCSC---CEEECSCSEEEEETTSCEEEEEEE-EESSTTCEEEEEETTCSCCCCEEEEE
T ss_pred             EEEEECCceEEEEEEEEEEEeCCCCC---CcEEecCCcceEEcCCcEEEEEEE-ecCCCcEEEEEEeCCCCCcccccccc
Confidence            9999776554 346677776322221   122233445678899999999999 4777776 9999999873  322222


Q ss_pred             EEecc--CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec--------------------------------
Q psy14540        155 TIRSS--GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE--------------------------------  200 (291)
Q Consensus       155 ~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~--------------------------------  200 (291)
                      .....  ......|.|.++..+|.|.|+|.+.|..|.......+.+..                                
T Consensus       262 ~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P  341 (524)
T 2ec8_A          262 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP  341 (524)
T ss_dssp             EECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEES
T ss_pred             ccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecC
Confidence            22211  12357899999999999999999999887654444333100                                


Q ss_pred             -------------------------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcc
Q psy14540        201 -------------------------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG  249 (291)
Q Consensus       201 -------------------------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~  249 (291)
                                                     ....|.|.++..+|+|.|+|.|.|..+..+.++.|.|..+|.+..... 
T Consensus       342 ~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~-  420 (524)
T 2ec8_A          342 KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDR-  420 (524)
T ss_dssp             CCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEEEC-
T ss_pred             CCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeeccc-
Confidence                                           124799999999999999999999999988999999998887765443 


Q ss_pred             cccCCceEEEEEEeecCCCCceEEEEECCEEc
Q psy14540        250 ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI  281 (291)
Q Consensus       250 ~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l  281 (291)
                       ..+|   +|.|.+ .|.|.|.|+|+++|..+
T Consensus       421 -~~~g---~l~C~~-~g~P~p~i~W~~~~~~~  447 (524)
T 2ec8_A          421 -LVNG---MLQCVA-AGFPEPTIDWYFCPGTE  447 (524)
T ss_dssp             -CSSS---CEEEEE-EEESCCEEECCCC----
T ss_pred             -CcCc---EEEEEE-EeecCCEEEEEECCCcc
Confidence             4455   999999 89999999999997665

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=100.00  E-value=3.7e-32  Score=221.39  Aligned_cols=273  Identities=16%  Similarity=0.270  Sum_probs=180.8

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCC----CeeEEEECC--eecC----C-----CeeEeceEEeeccceEEEEEEee
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPT----PHISWKLDG--YPLA----G-----DRFVMGQYMSLHGDVISHVNISS   68 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~--~~~~----~-----~~~~~~~~~~~~~~~~~~l~i~~   68 (291)
                      .|+..|..+.+.+|++++|.|.+.+.+.    +.+.|++++  ..+.    .     ..+ ..+.........++|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~L~I~~   81 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGI-PDRFSGSGSRTDFTLTIDP   81 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSC-CTTEEEEEETTEEEEEESS
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCc-cCcEEEEccCCcEEEEeCC
Confidence            4567788899999999999999987665    489999963  2210    0     000 0111111233457799999


Q ss_pred             cCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCE
Q psy14540         69 VRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGL  146 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~  146 (291)
                      ++.+|+|.|+|.+.+..+. ....+.+.|......|.   .....+. ....+|+.+.|.|.+..+.|.+ .+.|+++|.
T Consensus        82 v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~---v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~  157 (438)
T 1qgc_4           82 VEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPT---VSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  157 (438)
T ss_dssp             CCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCE---EEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             CcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCE---EEecCCC-hhhccCCceEEEEEEccccCCCcEEEEEECCE
Confidence            9999999999999987653 24456677754332221   1111111 2233578999999995547777 999999999


Q ss_pred             eccCCCceE--EeccCCc----eEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE-----------------------
Q psy14540        147 PILSDAEIT--IRSSGEY----TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR-----------------------  197 (291)
Q Consensus       147 ~~~~~~~~~--~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~-----------------------  197 (291)
                      .+.......  ......+    ...|.|..+..+|+|.|+|.|.|..+.......+.                       
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~  237 (438)
T 1qgc_4          158 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLK  237 (438)
T ss_dssp             EECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEE
T ss_pred             EcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEE
Confidence            886552111  1111111    35799999999999999999999877632211111                       


Q ss_pred             ----Ee--------------------------------------------------ccceEEEEeeeecCCCeeEEEEee
Q psy14540        198 ----VN--------------------------------------------------EYTSSLSIATLSTGHSGNYTCVAS  223 (291)
Q Consensus       198 ----~~--------------------------------------------------~~~~~l~i~~~~~~~~g~y~C~~~  223 (291)
                          +.                                                  .....|.|.++..+|+|.|+|.|.
T Consensus       238 L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  317 (438)
T 1qgc_4          238 LSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRR  317 (438)
T ss_dssp             EEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEEC
T ss_pred             EEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEE
Confidence                00                                                  001278889999999999999999


Q ss_pred             eCCc-----cCCceeEEEEec----CCCCCCCC-cccccCCceEEEEEEeecCC-CCc-eEEEEECCEEcc
Q psy14540        224 NTVA-----SDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVACVVQSGD-LPL-SLQWYKNGLAIS  282 (291)
Q Consensus       224 ~~~~-----~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C~~~~~~-p~~-~v~W~~~~~~l~  282 (291)
                      |..+     .......+.|..    +|.+.... ...+.+|+.++|.|.+ .|. |.+ .|.|++||..+.
T Consensus       318 n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~-~g~~P~~~~v~W~~~g~~~~  387 (438)
T 1qgc_4          318 EDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLV-KGYFPEPVTVTWNSGSLSSG  387 (438)
T ss_dssp             CSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEE-ESCBSSCCEEEEGGGTCCSS
T ss_pred             ccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEe-ccccCCCcEEEEecCCCCCc
Confidence            8443     223445677763    34333322 2337789999999999 565 877 999999998874

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.97  E-value=3.8e-32  Score=212.08  Aligned_cols=227  Identities=19%  Similarity=0.278  Sum_probs=152.4

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCC-CCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      .+|.|.. +.+..+.+|+.++|.|.+.+. |.+.+.|++++..+.. .++..       ......|.|.+++.+|+|.|+
T Consensus         6 ~~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~-------~~~~~~L~i~~~~~~d~G~Y~   77 (317)
T 2y25_A            6 TGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF-------KDGICTLLITEFSKKDAGIYE   77 (317)
T ss_dssp             SCCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC------------CCEEEEETTCCSTTCSCEE
T ss_pred             CCCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEE-------ECCeEEEEEccCCcccCeEEE
Confidence            3688874 556899999999999999885 7789999999988873 32222       122367999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC----------CCCceeEEeECCEec
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG----------DPPLTISWLKNGLPI  148 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----------~p~~~~~W~~~~~~~  148 (291)
                      |.+.+..+.....+.+.|...+.       .........+.+|+.+.|.|.+ .+          .|.+.+.|++++..+
T Consensus        78 C~~~n~~g~~~~~~~l~v~~~~~-------~~~~~~~~~~~~g~~~~l~c~~-~~~~l~c~~~~~~p~~~i~W~~~~~~~  149 (317)
T 2y25_A           78 VILKDDRGKDKSRLKLVDEAFKE-------LMMEVCKKIALSATDLKIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAI  149 (317)
T ss_dssp             EEEESSSCEEEEEECCSTHHHHH-------HHHHHHHHHHTCBCCCEEEECS-SEEEEEEEBSSCCSSCEEEEEESSSBC
T ss_pred             EEEECCCCcEEEEEEEEEecCcc-------ccccCCceecccCCCeEEEeec-cccEEEEEeccCCCCcEEEEEECCEEC
Confidence            99998877665555444432210       0011122344566666666665 33          789999999999888


Q ss_pred             cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540        149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS  228 (291)
Q Consensus       149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  228 (291)
                      ....+......+.                                        ...|.|.++..+|+|.|+|.|.|..+.
T Consensus       150 ~~~~~~~~~~~~~----------------------------------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~  189 (317)
T 2y25_A          150 RYSDRVKTGVTGE----------------------------------------QIWLQINEPTPNDKGKYVMELFDGKTG  189 (317)
T ss_dssp             CCCSSEEEEECSS----------------------------------------EEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred             CCCCCeEEeccCC----------------------------------------EEEEEECcCCcccCeeEEEEEEeCCce
Confidence            6655443322111                                        234666666666677777777766655


Q ss_pred             CCceeEEEEec--------------------CCCCCCC-Ccc-cccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        229 DNHSSNLRVNV--------------------PPHIGPF-TFG-ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       229 ~~~~~~l~v~~--------------------~p~~~~~-~~~-~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      ....+.+.+..                    +|.+... +.. .+.+|+.++|.|.+ .|.|.+.+.|+++|..+...
T Consensus       190 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~  266 (317)
T 2y25_A          190 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALASD  266 (317)
T ss_dssp             EEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE-ECSSCCEEEEEESSSEECCC
T ss_pred             EEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEE-ecCCCCEEEEEECCEeCCCC
Confidence            55555544321                    1222222 222 38899999999999 89999999999999988654

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=7e-31  Score=205.77  Aligned_cols=237  Identities=20%  Similarity=0.312  Sum_probs=158.2

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCC-CCCeeEEEECCeecCC----------CeeEeceEEeeccceEEEEEEeecCC
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAG----------DRFVMGQYMSLHGDVISHVNISSVRV   71 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~   71 (291)
                      ..|+..|..+.+.+|+++.|.|.+.+. |.+.+.|++++.....          .++..............+|.|.+++.
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            456777888999999999999999986 8889999998754320          01111111111113346799999999


Q ss_pred             CCCeEEEEEEeCCCCc-----eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc--eeEEeEC
Q psy14540         72 EDSGIYQCTATNRVGS-----QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL--TISWLKN  144 (291)
Q Consensus        72 ~d~G~y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~  144 (291)
                      +|+|.|+|.+.+..+.     ....+.|.|...+..|.    . ..+ ...+.+|+.+.|.|.+. +.|++  .+.|+++
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~----i-~~~-~~~~~~g~~~~l~C~~~-g~p~~~~~v~W~k~  156 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPV----V-SGP-AARATPQHTVSFTCESH-GFSPRDITLKWFKN  156 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCE----E-ECC-SSCBCTTCEEEEEEEEE-EEBSSCCEEEEEET
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCce----e-ecc-ccccCCCCEEEEEEEEe-CccCCCcEEEEEEC
Confidence            9999999999876553     22456788887664431    1 112 25678899999999995 55544  8999999


Q ss_pred             CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      |..+........               ...+.|.|..                    .+.|.|.....+|+|.|+|.|.|
T Consensus       157 g~~l~~~~~~~~---------------~~~~~~~~~~--------------------~s~L~i~~~~~d~~g~Y~C~a~n  201 (327)
T 2wng_A          157 GNELSDFQTNVD---------------PVGESVSYSI--------------------HSTAKVVLTREDVHSQVICEVAH  201 (327)
T ss_dssp             TEECCCEEEEEE---------------CSSCCSCEEE--------------------EEEEEEECCTTGGGCEEEEEEEC
T ss_pred             CEEccccccccc---------------cccCCCceEE--------------------EEEEEEechhcCcCceEEEEEec
Confidence            988754321111               0112333432                    23466666666778888888888


Q ss_pred             CCccC---CceeEE--EEecCCCCCCCCcccccCCceEEEEEEeecC-CCCc-eEEEEECCEEccC
Q psy14540        225 TVASD---NHSSNL--RVNVPPHIGPFTFGELMEGVRTQVACVVQSG-DLPL-SLQWYKNGLAISQ  283 (291)
Q Consensus       225 ~~~~~---~~~~~l--~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~-~p~~-~v~W~~~~~~l~~  283 (291)
                      ..+..   ..+..+  .+..+|.+...+.. +.+|+.++|.|.+ .+ +|++ .|.|++||+++..
T Consensus       202 ~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~-~~~G~~v~l~C~~-~g~~p~~~~v~W~k~g~~l~~  265 (327)
T 2wng_A          202 VTLQGDPLRGTANLSETIRVPPTLEVTQQP-VRAENQVNVTCQV-RKFYPQRLQLTWLENGNVSRT  265 (327)
T ss_dssp             TTSCSCCEEEEEEGGGTBCBCCEEEEEEEC-CSSTTCCEEEEEE-EEEBSSCEEEEEEETTEEEEE
T ss_pred             cccCCCcccceEEeccccCCCCEEEEecCC-cCCCCcEEEEEEE-ccccCCCcEEEEEECCeEccC
Confidence            76542   122222  34556666554433 7899999999999 55 4554 8999999998853

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=196.32  Aligned_cols=209  Identities=18%  Similarity=0.271  Sum_probs=160.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...|....+.+|+.+.|.|.+.+.+.+ .+.|++++..+...              ...|.|.+++.+|+|.|+|.
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~--------------~~~l~i~~~~~~d~G~Y~C~   66 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS--------------TPSYRITSASVNDSGEYRCQ   66 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC--------------SSEEEESSCCGGGCEEEEEE
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc--------------CCeEEEecCCcccCeEEEEE
Confidence            5889999999999999999999999887776 89999999887632              13378999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      +.+..+  +..+.+.|...+      ..  ..+....+.+|+.+.|.|.+..+.|.+.+.|++++..+...         
T Consensus        67 ~~~~~~--s~~~~l~v~~~~------~~--~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~---------  127 (262)
T 3rjd_A           67 RGLSGR--SDPIQLEIHRGW------LL--LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF---------  127 (262)
T ss_dssp             ESSSCC--CCCEEEEEECSS------EE--EEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------
T ss_pred             EecCCc--cccEEEEEeccc------eE--ecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc---------
Confidence            986544  345566666432      11  12233567799999999999668888999999998775211         


Q ss_pred             CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec-
Q psy14540        161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV-  239 (291)
Q Consensus       161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~-  239 (291)
                                                             .....|.|.++..+|+|.|+|.+.|..+..+..+.|.|.. 
T Consensus       128 ---------------------------------------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~  168 (262)
T 3rjd_A          128 ---------------------------------------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL  168 (262)
T ss_dssp             ---------------------------------------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS
T ss_pred             ---------------------------------------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC
Confidence                                                   0023577788888888889999988887777777888874 


Q ss_pred             --CCCCCCCCcccccCCceEEEEEEeecCCCC-c----eEEEEECCEEccC
Q psy14540        240 --PPHIGPFTFGELMEGVRTQVACVVQSGDLP-L----SLQWYKNGLAISQ  283 (291)
Q Consensus       240 --~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~-~----~v~W~~~~~~l~~  283 (291)
                        +|.+...+...+.+|+.++|+|.+ .+.|. +    .+.|+++|..+..
T Consensus       169 ~~~p~~~~~~~~~~~~g~~~~l~C~~-~~~p~~p~~~~~~~w~~~~~~~~~  218 (262)
T 3rjd_A          169 FPAPVLNASVTSPLLEGNLVTLSCET-KLLLQRPGLQLYFSFYMGSKTLRG  218 (262)
T ss_dssp             SCCCEEEESSCSSEETTCCEEEEEEC-CCCCC-----EEEEEEETTEEEEE
T ss_pred             CCCCeEeecCceeecCCCeEEEEeEc-ccCCCCCCccEEEEEEeCCcEecc
Confidence              455555554448899999999999 77664 4    4799999998863

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.97  E-value=3.2e-30  Score=210.66  Aligned_cols=245  Identities=18%  Similarity=0.258  Sum_probs=167.2

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCee-----EEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHI-----SWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +|.+.|....+.+|++++|.|.+.+ |.+.+     .|+|++..+....             ...|.|.+++. |+| |+
T Consensus         1 ~i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~~-------------~~~l~i~~v~~-d~g-Y~   64 (450)
T 1z7z_I            1 QTSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGNN-------------RKVYELSNVQE-DSQ-PM   64 (450)
T ss_dssp             CCEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTTT-------------EEEEEEEEECS-CBC-CE
T ss_pred             CcccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecCCC-------------ceEEEEEeccc-CCe-eE
Confidence            3678899999999999999999998 77888     8998876443221             13588999987 999 99


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc---eeEEeECCEeccCCCceE
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL---TISWLKNGLPILSDAEIT  155 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~~~~~~~~~~~~  155 (291)
                      |.+.+..+..+..+.|.|...|.      .....+....+.+|+.+.|.|.+ .+.|.+   .+.|++++..+.....  
T Consensus        65 C~a~~~~~~~~~~~~l~V~~~P~------~~~~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~~v~W~k~g~~l~~~~~--  135 (450)
T 1z7z_I           65 CYSNCPDGQSTAKTFLTVYWTPE------RVELAPLPSWQPVGKNLTLRCQV-EGGAPRANLTVVLLRGEKELKREPA--  135 (450)
T ss_dssp             EEEEETTEEEEEECEEEEEBCCS------EEEECCCCSEECTTSEEEEEEEE-ECCBCGGGEEEEEEETTEEEEEEEC--
T ss_pred             EEEeCCCCcceeEEEEEEEeCCC------cceecCCCceEeeCCeEEEEEEe-cCCCCCcCcEEEEeeCCEEeecccc--
Confidence            99986655677778888887542      12123344678899999999999 566666   8999999988754321  


Q ss_pred             EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC--------ceEEE----------------------------Ee
Q psy14540        156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH--------SSNLR----------------------------VN  199 (291)
Q Consensus       156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--------~~~~~----------------------------~~  199 (291)
                        ........|.|..+..+|.|.|+|.+.|..|....        ...+.                            +.
T Consensus       136 --~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~  213 (450)
T 1z7z_I          136 --VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD  213 (450)
T ss_dssp             --CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEE
T ss_pred             --cccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEee
Confidence              11223568999999999999999999998653221        11100                            00


Q ss_pred             cc------------------------ceEEEEe---eeecCCCe--eEEEEeeeCCccCCceeEEEEec--CCCCCCCCc
Q psy14540        200 EY------------------------TSSLSIA---TLSTGHSG--NYTCVASNTVASDNHSSNLRVNV--PPHIGPFTF  248 (291)
Q Consensus       200 ~~------------------------~~~l~i~---~~~~~~~g--~y~C~~~~~~~~~~~~~~l~v~~--~p~~~~~~~  248 (291)
                      ..                        ...+.+.   ++..+|+|  .|+|.+.|..+.......|.|..  +|.+... .
T Consensus       214 g~~P~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~-~  292 (450)
T 1z7z_I          214 GLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT-K  292 (450)
T ss_dssp             SCTTGGGCEEEEEETTEECCCEEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES-C
T ss_pred             CCCCCCceEEEEeCCCEeCCceEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC-C
Confidence            00                        0011111   55789999  99999999988887788888876  4444332 2


Q ss_pred             ccccCCceEEEEEEeecCCCCceEEEEECCEEc
Q psy14540        249 GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI  281 (291)
Q Consensus       249 ~~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l  281 (291)
                      ..+.+|+.++|.|.+ .  |.+.++|  +|.++
T Consensus       293 ~~v~~G~~v~l~C~~-~--p~p~i~W--~g~~~  320 (450)
T 1z7z_I          293 PEVSEGTEVTVKCEA-H--PRAKVTL--NGVPA  320 (450)
T ss_dssp             SEEETTCEEEEEEEC------------------
T ss_pred             eeEeCCCcEEEEEec-C--CCCEeEE--CCEEc
Confidence            248999999999999 4  8899999  88877

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.97  E-value=9.9e-32  Score=233.43  Aligned_cols=265  Identities=23%  Similarity=0.358  Sum_probs=66.1

Q ss_pred             cceeecce-eeeecCCcEEEEEEecC--CCCCeeEEEECCeecCCCeeEece-EEe---eccceEEEEEEeecCCCCCeE
Q psy14540          4 QLIYKFIQ-QTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLAGDRFVMGQ-YMS---LHGDVISHVNISSVRVEDSGI   76 (291)
Q Consensus         4 ~~~~~~~~-~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~-~~~---~~~~~~~~l~i~~~~~~d~G~   76 (291)
                      .+.+.+.. ..+.+|+.++|.|.+.+  .+.+.+.|++++..+......... ...   ......+.|.|.+++.+|+|.
T Consensus       225 ~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  304 (772)
T 3v2a_R          225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL  304 (772)
T ss_dssp             EEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSE
T ss_pred             eeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeE
Confidence            34444443 68999999999999986  456789999998876532111100 000   122345789999999999999


Q ss_pred             EEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540         77 YQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI  156 (291)
Q Consensus        77 y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~  156 (291)
                      |+|.+.+..+.....+.|.|...|...    ..........+.+|+.+.|.|.+ .+.|.+.+.|+++|..+....... 
T Consensus       305 Y~C~~~~~~~~~~~~~~l~V~~~p~~~----~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~g~~l~~~~~~~-  378 (772)
T 3v2a_R          305 YTCAASSGLMTKKNSTFVRVHEKPFVA----FGSGMESLVEATVGERVRIPAKY-LGYPPPEIKWYKNGIPLESNHTIK-  378 (772)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCC-------------------------------------------------------
T ss_pred             EEEEEEcCCcceeEEEEEEEeCCCeeE----eccCCCCcEEEcCCCcEEEEEEE-eeeCCCeEEEEECCEeCCCCceEc-
Confidence            999999888877888888888765322    11112234668899999999999 688999999999998876532221 


Q ss_pred             eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC--ceEEEEec----------------------------------
Q psy14540        157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH--SSNLRVNE----------------------------------  200 (291)
Q Consensus       157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~~~~~~~~----------------------------------  200 (291)
                           ....|.|..+..+|.|.|+|.+.|..|....  .+.+.+..                                  
T Consensus       379 -----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p  453 (772)
T 3v2a_R          379 -----AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP  453 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCC
Confidence                 2467999999999999999999998765422  11111000                                  


Q ss_pred             --c---------------------------------------------------------ceEEEEeeeecCCCeeEEEE
Q psy14540        201 --Y---------------------------------------------------------TSSLSIATLSTGHSGNYTCV  221 (291)
Q Consensus       201 --~---------------------------------------------------------~~~l~i~~~~~~~~g~y~C~  221 (291)
                        .                                                         ...|.|..+  +|+|.|+|.
T Consensus       454 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~  531 (772)
T 3v2a_R          454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCE  531 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEE
Confidence              0                                                         023333333  689999999


Q ss_pred             eeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceEEEEECCEEcc
Q psy14540        222 ASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS  282 (291)
Q Consensus       222 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~  282 (291)
                      |.|..|.....+.|.|..+|.+...+...+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+.
T Consensus       532 a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~  591 (772)
T 3v2a_R          532 AVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTA-DRSTFENLTWYKLGPQPL  591 (772)
T ss_dssp             -------------------------------------------------------------
T ss_pred             EEccccccceeEEEEEECCceeeccCCcccccCCceEEEEec-cCCCCCCcEEEEcCCccc
Confidence            999999888889999998888877666568899999999999 888999999999987653

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.97  E-value=2.6e-31  Score=211.14  Aligned_cols=232  Identities=15%  Similarity=0.175  Sum_probs=167.9

Q ss_pred             eeeecCCcEEEEEEecCCCCCeeEEEECCeecC-C--C-eeE------eceEEeec---cceEEEEEEeecCCCCCeEEE
Q psy14540         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-G--D-RFV------MGQYMSLH---GDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~--~-~~~------~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +.+.+|++++|.|.+.+.|.+.+.|++++..+. .  . ...      ..+.....   ....++|.|.+++.+|+|.|+
T Consensus         4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   83 (363)
T 1wio_A            4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (363)
T ss_dssp             EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred             EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence            578899999999999888889999999885321 0  0 000      00000000   123456999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      |.+.+..    ..+.|.|....          .. ....+.+|+.++|.|.+ .+.|.+.+.|++++..+..        
T Consensus        84 C~~~n~~----~~~~l~V~~~~----------~~-~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~--------  139 (363)
T 1wio_A           84 CEVEDQK----EEVQLLVFGLT----------AN-SDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQ--------  139 (363)
T ss_dssp             EEETTEE----EEEEEEEEEEE----------ES-SCSSEESBSCEEEEEEC-CTTCCCCEEEECSSSCEEE--------
T ss_pred             EEEEECC----CcEEEEEEeCC----------CC-CceEEecCCCEEEEEEc-CCCCCCeEEEEcCCCcccc--------
Confidence            9998653    35666665421          11 11356799999999999 5789999999998755411        


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE----------------------E----e-------------
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR----------------------V----N-------------  199 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~----------------------~----~-------------  199 (291)
                         ....|.|.++..+|.|.|+|.+.|..+.....+.+.                      .    .             
T Consensus       140 ---~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~  216 (363)
T 1wio_A          140 ---GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQ  216 (363)
T ss_dssp             ---ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEE
T ss_pred             ---cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCCCceEEecCCEEEEEEEEecccccCCCceeEEEe
Confidence               245799999999999999999998643221111111                      0    0             


Q ss_pred             ----------------c-----------------c--ceEEEEeeeecCCCeeEEEEeeeC--CccCCceeEEEEecCCC
Q psy14540        200 ----------------E-----------------Y--TSSLSIATLSTGHSGNYTCVASNT--VASDNHSSNLRVNVPPH  242 (291)
Q Consensus       200 ----------------~-----------------~--~~~l~i~~~~~~~~g~y~C~~~~~--~~~~~~~~~l~v~~~p~  242 (291)
                                      .                 .  ...|.|.++..+|+|.|+|.|.|.  .|..+..+.|.|..   
T Consensus       217 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~---  293 (363)
T 1wio_A          217 AERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR---  293 (363)
T ss_dssp             ESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE---
T ss_pred             cCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE---
Confidence                            0                 0  227888899999999999999999  88888888888762   


Q ss_pred             CCCCCcccccCCceEEEEEEeecCCCCce--EEEEECCEEccC
Q psy14540        243 IGPFTFGELMEGVRTQVACVVQSGDLPLS--LQWYKNGLAISQ  283 (291)
Q Consensus       243 ~~~~~~~~~~~g~~v~l~C~~~~~~p~~~--v~W~~~~~~l~~  283 (291)
                               ..|+.++|+|.+ .+.|+|.  +.|+++|..+..
T Consensus       294 ---------v~g~~~~l~C~~-~g~p~p~~~i~W~~~~~~~~~  326 (363)
T 1wio_A          294 ---------ATQLQKNLTCEV-WGPTSPKLMLSLKLENKEAKV  326 (363)
T ss_dssp             ---------ECCCSSSEEEEE-ESSCCTTCCEEEECSSSSCSE
T ss_pred             ---------ecCCCeeEEEEE-ccccCCCccEEEEeCCCceee
Confidence                     128889999999 8888887  999999988754

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.97  E-value=2.2e-30  Score=201.74  Aligned_cols=235  Identities=19%  Similarity=0.249  Sum_probs=158.1

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCC-----eeEEEECCeecCCC--------------eeEeceEEeeccceEEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTP-----HISWKLDGYPLAGD--------------RFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~-----~v~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~   65 (291)
                      ++..|..+.+..|++++|.|.+.+.+.+     .+.|+|++......              +..............++|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            5667888899999999999999875443     48999987643211              1111000000111235699


Q ss_pred             EeecCCCCCeEEEEEEe-CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540         66 ISSVRVEDSGIYQCTAT-NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |.+++.+|+|.|+|.+. +..+.....+.|.+...|..       ........+..|+.+.+.|.+..+.|.+.+.|+++
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~-------~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~  155 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN-------TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD  155 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEE-------EEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEET
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcc-------eecccceEeecCceEEEEEEccCccCCcEEEeecC
Confidence            99999999999999886 44455666666666654421       11222345667888899998867899999999999


Q ss_pred             CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      +..+.......                 ....|.|..                    .+.|.|.....+|+|.|+|.|.|
T Consensus       156 ~~~~~~~~~~~-----------------~~~~~~~~~--------------------~s~l~i~~~~~~d~g~Y~C~a~n  198 (313)
T 4fqp_A          156 LGGMPNTSQVP-----------------GFLSGTVTV--------------------TSLWILVPSSQVDGKNVTCKVEH  198 (313)
T ss_dssp             TCCEEEEEEEE-----------------CSSTTCEEE--------------------EEEEEECCCGGGTTCEEEEEEEC
T ss_pred             Cccccccceee-----------------eeccccccc--------------------ceeeeecccccccCeeEEEEEEc
Confidence            87664221111                 111222221                    24577888888999999999998


Q ss_pred             CCccCC--ceeEEEEecCCCCCCCCccc--ccCCceEEEEEEeecCCCCc-eEEEEECCEEccCC
Q psy14540        225 TVASDN--HSSNLRVNVPPHIGPFTFGE--LMEGVRTQVACVVQSGDLPL-SLQWYKNGLAISQP  284 (291)
Q Consensus       225 ~~~~~~--~~~~l~v~~~p~~~~~~~~~--~~~g~~v~l~C~~~~~~p~~-~v~W~~~~~~l~~~  284 (291)
                      ..+...  .++.|.|..+|.+.......  +.+|+.++|+|.+ .|.|.| .|+|+|+|.+++..
T Consensus       199 ~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~~v~W~~~~~~l~~~  262 (313)
T 4fqp_A          199 ESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDA-RSNPEPTGYNWSTTMGPLPPF  262 (313)
T ss_dssp             TTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEE-EEESCCCEEEEEETTBSCCTT
T ss_pred             cCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEe-cCCCCCcEEEEEECCEECCCc
Confidence            775543  44556666677664433332  7788999999999 788887 79999999988654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.97  E-value=3.9e-28  Score=194.68  Aligned_cols=252  Identities=23%  Similarity=0.357  Sum_probs=178.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecCCCee-EeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRF-VMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +|.|.. +.+..+.+|+.+.|.|.+.+.|.+.+.|+++  |..+..... ...............|.|.+++.+|+|.|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            577776 6677889999999999999999999999999  877753110 011111122234578999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceEE
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EITI  156 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~  156 (291)
                      |.+.|..|.....+.|.|...|.       .........+.+|+.+.|.|.+ .+.|.+.+.|++++..+....  +...
T Consensus        80 C~a~n~~g~~~~~~~l~V~~~P~-------~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~l~~~~~~~~~~  151 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDIEYAPK-------FISNQTIYYSWEGNPINISCDV-KSNPPASIHWRRDKLVLPAKNTTNLKT  151 (389)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEEE-------ECCSCCEEEECTTCCEEEEECE-EEESCCEEEEEETTEESSCTTCTTEEE
T ss_pred             EEEEeCCCCcceEEEEEEEeCCE-------EecCcceEEeccCCEEEEEEEE-EecCCCeEEEEECCccCCcccCceEEE
Confidence            99999999888888999986552       1123333467899999999999 688999999999999987654  3333


Q ss_pred             eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE--------------------------------------
Q psy14540        157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV--------------------------------------  198 (291)
Q Consensus       157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~--------------------------------------  198 (291)
                      ... .....|.|..+...|.|.|+|.|.|..|.......+.+                                      
T Consensus       152 ~~~-~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y  230 (389)
T 2jll_A          152 YST-GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHY  230 (389)
T ss_dssp             EEC-SSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEE
T ss_pred             ecc-CCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEE
Confidence            322 23568999999999999999999998775433322220                                      


Q ss_pred             ---------------e--ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCC-CCccc--ccCCceEE
Q psy14540        199 ---------------N--EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGP-FTFGE--LMEGVRTQ  258 (291)
Q Consensus       199 ---------------~--~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~--~~~g~~v~  258 (291)
                                     .  .....+.|.++.+.+.|.|+|.|.|..|....+..+.+...+...+ .+...  ...+..+.
T Consensus       231 ~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~~~~~~~~~~~v~  310 (389)
T 2jll_A          231 QVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFK  310 (389)
T ss_dssp             EEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCCEEEEEETTTEEE
T ss_pred             EEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCccccccCcCCEEE
Confidence                           0  0125688889999999999999999987654444444433221111 11111  34667888


Q ss_pred             EEEEe
Q psy14540        259 VACVV  263 (291)
Q Consensus       259 l~C~~  263 (291)
                      |.+..
T Consensus       311 l~W~~  315 (389)
T 2jll_A          311 LSITK  315 (389)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            88864

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=3.3e-29  Score=192.94  Aligned_cols=220  Identities=18%  Similarity=0.305  Sum_probs=157.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.|...+....+.+|+.++|.|.+.+    .+.|++++....  ..       ........|.|.+++..|+|.|+|.+
T Consensus         4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~--~~-------~~~~~~~~L~i~~~~~~d~G~Y~C~~   70 (289)
T 3ejj_X            4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW--TL-------DPESPGSTLTTRNATFKNTGTYRCTE   70 (289)
T ss_dssp             CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS--EE-------CCCSSCCEEEESSCCGGGCEEEEEEC
T ss_pred             CcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE--EE-------eccCCccEEEEeeeccccCEEEEEEE
Confidence            677777888889999999999999876    499998764322  00       11122256999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeE-CCEeccCCCceEEecc
Q psy14540         82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLK-NGLPILSDAEITIRSS  159 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~-~~~~~~~~~~~~~~~~  159 (291)
                      .+..+.....+.|.|..++..      ....+....+.+|+.+.|.|.+ .+.+.+ .+.|++ ++..+....+..... 
T Consensus        71 ~~~~~~~~~~~~l~V~~~~~~------~~~~~~~~~v~~g~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-  142 (289)
T 3ejj_X           71 LEDPMAGSTTIHLYVKDPAHS------WNLLAQEVTVVEGQEAVLPCLI-TDPALKDSVSLMREGGRQVLRKTVYFFSP-  142 (289)
T ss_dssp             CC-----CEEEEEEECCSSCS------EEESCSEEEEETTSCEEECEEE-SCGGGGGSEEEEEGGGEECCTTCCEEEET-
T ss_pred             eccCCcceeEEEEEEeCCCcc------eecccceEEEecCCceEeEEEc-cCCCcceEEEEEecCCeecCCCccEEECC-
Confidence            887777788888888765422      1233356788899999999999 465555 499987 565554433322211 


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEee-eCCccCCceeEEEEe
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS-NTVASDNHSSNLRVN  238 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~-~~~~~~~~~~~l~v~  238 (291)
                                                                ...|.|.++..+|+|.|+|.+. +..+..+..+.|.|.
T Consensus       143 ------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~  180 (289)
T 3ejj_X          143 ------------------------------------------WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN  180 (289)
T ss_dssp             ------------------------------------------TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ------------------------------------------CCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEE
Confidence                                                      2347777788888888888888 444666777888887


Q ss_pred             ----cCCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        239 ----VPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       239 ----~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                          .+|.+...+... +.+|+.++|.|.+.++.|.+.+.|+++|..+...
T Consensus       181 ~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~  231 (289)
T 3ejj_X          181 RVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP  231 (289)
T ss_dssp             SSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCC
T ss_pred             ECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeecc
Confidence                456665555544 6799999999999444889999999999988654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=1.8e-29  Score=194.54  Aligned_cols=209  Identities=18%  Similarity=0.254  Sum_probs=155.0

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .||.|...+....+.+|++++|.|.+.+    .+.|++++..+.   .     ....+   ..|.|.+++..|+|.|+|.
T Consensus        11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~---~-----~~~~~---~~L~i~~~~~~d~G~Y~C~   75 (290)
T 2o26_X           11 SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE---M-----VENKK---NEWIQEKAEATRTGTYTCS   75 (290)
T ss_dssp             -CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC---E-----EEECS---SEEEETTCCGGGCEEEEEE
T ss_pred             CCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee---e-----ecCCC---ceEEEeccCHHhCeEEEEE
Confidence            3688888888889999999999999986    899999988661   0     01111   5699999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEe-ECCEeccCCCceEEec
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWL-KNGLPILSDAEITIRS  158 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~-~~~~~~~~~~~~~~~~  158 (291)
                      +.+  +. ...+.|.|..++...       .......+.+|+.+.|.|.+ .+ |. +.+.|+ ++|..+....+.....
T Consensus        76 ~~n--g~-~~~~~l~V~~~~~~~-------~~~~~~~~~~g~~v~l~C~~-~~-p~~~~v~W~~~~g~~l~~~~~~~~~~  143 (290)
T 2o26_X           76 NSN--GL-TSSIYVFVRDPAKLF-------LVGLPLFGKEDSDALVRCPL-TD-PQVSQYSLIECDGKSLPTDLTFVPNP  143 (290)
T ss_dssp             ESS--SC-EEEEEEEEECSSCCB-------CCCCCEEEETTSCEEECCCB-SC-CSCEEEEEEETTSCCCCTTCEEEEET
T ss_pred             eeC--Cc-cEEEEEEEeCCCccc-------ccccceEEecCCeEEEeCcC-CC-CCCceEEEEeCCCcCCCCCCceeeCC
Confidence            998  43 677788887654221       23345677899999999999 45 76 999995 5776664433222111


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCe-eEEEEeeeCCcc-CCceeEEE
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSG-NYTCVASNTVAS-DNHSSNLR  236 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~~~-~~~~~~l~  236 (291)
                                                                 ...|.|.++..+|+| .|+|.|.|..+. .+..+.|.
T Consensus       144 -------------------------------------------~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~  180 (290)
T 2o26_X          144 -------------------------------------------KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLK  180 (290)
T ss_dssp             -------------------------------------------TTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEE
T ss_pred             -------------------------------------------CCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEE
Confidence                                                       225677777888888 888888887544 34456777


Q ss_pred             Ee----cCCCCCCCCccc-ccCCceEEEEEEeecCCCCce-EEEEECCEE
Q psy14540        237 VN----VPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLS-LQWYKNGLA  280 (291)
Q Consensus       237 v~----~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~-v~W~~~~~~  280 (291)
                      |.    .+|.+...+... +.+|+.++|.|.+ .+.|.|. +.|+++|..
T Consensus       181 V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~-~g~p~p~~i~W~~~~~~  229 (290)
T 2o26_X          181 VREAIKAIPVVSVPETSHLLKKGDTFTVVCTI-KDVSTSVNSMWLKMNPQ  229 (290)
T ss_dssp             EECCCCSCCEEECSCSBCCCCTTCCEEEEEEE-EESSTTCEEEEEEESSS
T ss_pred             EEeCCCCCCccccCCCcceEecCCcEEEEEEE-ecCCcceeEEEecCCCC
Confidence            76    567665554444 8999999999999 6888886 999999877

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=1.7e-30  Score=204.62  Aligned_cols=227  Identities=22%  Similarity=0.291  Sum_probs=165.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEec-------CCCCCeeEEEECCeecC--CC-eeEeceEEeeccceEEEEEEeecCC
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIAT-------GNPTPHISWKLDGYPLA--GD-RFVMGQYMSLHGDVISHVNISSVRV   71 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~-------~~~~~~v~W~~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~i~~~~~   71 (291)
                      .|.|...|....+.+|+.+.|.|.+.       +.|.+.+.|++++..+.  .. ....   ... +   ..|.|.+++.
T Consensus        18 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~---~~~-~---~~L~i~~v~~   90 (339)
T 3o4o_C           18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM---WAQ-D---GALWLLPALQ   90 (339)
T ss_dssp             CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCE---EEE-T---TEEEESSBCT
T ss_pred             hHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccE---Eee-C---CeEEECCCCc
Confidence            57888999999999999999999997       78888999999988743  21 1111   111 1   3599999999


Q ss_pred             CCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEe----eCCCCCceeEEeECCEe
Q psy14540         72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV----TKGDPPLTISWLKNGLP  147 (291)
Q Consensus        72 ~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~~~W~~~~~~  147 (291)
                      .|+|.|+|.+.+..+.....+.|.|...+.....     .......+.+|+.+.|.|.+    ..+.|.+.+.|++++..
T Consensus        91 ~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~-----~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~  165 (339)
T 3o4o_C           91 EDSGTYVCTTRNASYCDKMSIELRVFENTDAFLP-----FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLL  165 (339)
T ss_dssp             TCCEEEECCEEETTEEEEEEEEEEEECSCGGGHH-----HHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCB
T ss_pred             ccCEEEEEEEECCcceEEEEEEEEEEcCCCcccc-----ccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCee
Confidence            9999999999988887888888888876522100     11122467899999999993    26888999999999988


Q ss_pred             ccCCCc-eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        148 ILSDAE-ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       148 ~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                      +..... ....                                          .....|.|.++..+|+|.|+|.|.|..
T Consensus       166 ~~~~~~~~~~~------------------------------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~  203 (339)
T 3o4o_C          166 LDKDNEKFLSV------------------------------------------RGTTHLLVHDVALEDAGYYRCVLTFAH  203 (339)
T ss_dssp             CCTTCSSEEEC------------------------------------------TTSSEEEESSCCGGGCEEEEEEEECCB
T ss_pred             CCCCCceeEEc------------------------------------------CCcceEEEcccCHhhCeEEEEEEEECC
Confidence            754421 1111                                          012357777777788888888888766


Q ss_pred             cc----CCceeEEEEec-----CCCCCCCCccc-ccCCceEEEEEEee--cCCC-CceEEEEECCEEcc
Q psy14540        227 AS----DNHSSNLRVNV-----PPHIGPFTFGE-LMEGVRTQVACVVQ--SGDL-PLSLQWYKNGLAIS  282 (291)
Q Consensus       227 ~~----~~~~~~l~v~~-----~p~~~~~~~~~-~~~g~~v~l~C~~~--~~~p-~~~v~W~~~~~~l~  282 (291)
                      +.    .+..+.|.|..     +|.+...+... +.+|+.++|.|.+.  .|.| ++.+.|++||..+.
T Consensus       204 g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~  272 (339)
T 3o4o_C          204 EGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE  272 (339)
T ss_dssp             TTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSS
T ss_pred             CCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecc
Confidence            52    34566677763     44555444433 89999999999984  4666 88999999998764

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.97  E-value=8.5e-30  Score=210.65  Aligned_cols=213  Identities=20%  Similarity=0.243  Sum_probs=150.1

Q ss_pred             ecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCC-eeEeceEEeec-cceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          8 KFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGD-RFVMGQYMSLH-GDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      .|....+.+|+.+.|.|.+. +.|.+.+.|++++..+... ........... .....+|.|.+++.+|+|.|+|.+.+.
T Consensus       233 ~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~  312 (527)
T 3qs9_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (527)
T ss_dssp             SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE
T ss_pred             CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC
Confidence            45677899999999999997 7899999999999877632 22211111000 122356999999999999999999876


Q ss_pred             CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceE
Q psy14540         85 VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS  164 (291)
Q Consensus        85 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~  164 (291)
                         ....+.|.|...+.     ...........+.+|+.+.|.|.+ .+.|.|.+.|+++|..+....+...        
T Consensus       313 ---~~~~~~L~V~~~p~-----i~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~--------  375 (527)
T 3qs9_E          313 ---PSQSALVTIVEKGF-----INATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSFPCEQKGLD--------  375 (527)
T ss_dssp             ---EEEEEEEEEC--CE-----EECCCSCCEECCCTTCCCCEEEEE-EEESCCEEEEEETTEEEECBCCBCS--------
T ss_pred             ---CCceEEEEEEccCc-----cccccCcccEEEcCCCeEEEEEEE-EecCCCEEEEEECCEECcCCccccc--------
Confidence               66677788876541     111112234677899999999999 6899999999999988754322100        


Q ss_pred             EEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCC
Q psy14540        165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIG  244 (291)
Q Consensus       165 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~  244 (291)
                                                          ....|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|.+.
T Consensus       376 ------------------------------------~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~  419 (527)
T 3qs9_E          376 ------------------------------------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVL  419 (527)
T ss_dssp             ------------------------------------SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEE
T ss_pred             ------------------------------------CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEE
Confidence                                                12357777888888888889999888888888889998888775


Q ss_pred             CCCcccccCCceEEEEEEeecCCCCceEEEEECCEEc
Q psy14540        245 PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI  281 (291)
Q Consensus       245 ~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l  281 (291)
                      ...     .|  ..|.|.+ .|.|.|.|.|++++...
T Consensus       420 ~~~-----~~--~~l~C~a-~g~P~p~i~W~~~~~~~  448 (527)
T 3qs9_E          420 AEA-----SA--SQASCFS-DGYPLPSWTWKKCSDKS  448 (527)
T ss_dssp             ECC-----CC--E---EEE-ECSSCCEEEEECCC---
T ss_pred             EeC-----CC--CEEEEEE-EEEcCCeEEEEECCCCc
Confidence            543     22  3579999 89999999999886543

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.97  E-value=6.4e-29  Score=192.78  Aligned_cols=222  Identities=19%  Similarity=0.301  Sum_probs=170.4

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      .||.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+...  ++..    .....+.+.|.|.+++.+|+|.|+
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~d~G~Y~   78 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRI----QEFKGGYHQLIIASVTDDDATVYQ   78 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEE----EEETTTEEEEEESSCCGGGCSEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEE----EECCCCEEEEEEccCChhhCeEEE
Confidence            4899999999999999999999999998888999999999987632  2222    112334567999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      |.+.+..+.....+.|.|...+.....  ..........+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....
T Consensus        79 C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~  155 (305)
T 2nzi_A           79 VRATNQGGSVSGTASLEVEVPAKIHLP--KTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGHYQVIV  155 (305)
T ss_dssp             EEEEETTEEEEEEEEEEECEEEEECCC--HHHHSSCCEEEETTCCEEEEEEE-EEESCCEEEEEESSSBCCSSSSCEEEE
T ss_pred             EEEEcCCCCccceEEEEEecCCccCCC--ccccccccEEecCCCEEEEEEEE-CCCCCCEEEEEECCEECCCCCcEEEEE
Confidence            999988888778888888654421100  01122344677899999999999 688999999999999887766655543


Q ss_pred             cCCceEEEEEee-CCCCCceeEEEEEEecCCCCCCceEEEEec-------------------------------------
Q psy14540        159 SGEYTSSLSIAT-LSTGHSGNYTCVASNTVASDNHSSNLRVNE-------------------------------------  200 (291)
Q Consensus       159 ~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~-------------------------------------  200 (291)
                      .. ....|.+.. +...|.|.|+|.+.|..|.......+.+..                                     
T Consensus       156 ~~-~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~  234 (305)
T 2nzi_A          156 TR-SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYI  234 (305)
T ss_dssp             CS-SEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEE
T ss_pred             cC-CceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEE
Confidence            32 356788988 999999999999999887655444443110                                     


Q ss_pred             -----------------cceEEEEeeeecCCCeeEEEEeeeCCccCC
Q psy14540        201 -----------------YTSSLSIATLSTGHSGNYTCVASNTVASDN  230 (291)
Q Consensus       201 -----------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~  230 (291)
                                       ....+.|.++...+.|.|+|.|.|..|...
T Consensus       235 v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~  281 (305)
T 2nzi_A          235 VEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSK  281 (305)
T ss_dssp             EEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECC
T ss_pred             EEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccC
Confidence                             045678889999999999999999986544

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=3.5e-31  Score=208.14  Aligned_cols=224  Identities=26%  Similarity=0.410  Sum_probs=95.5

Q ss_pred             ecceeeeecCCcEEEEEEecCC-CCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV   85 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   85 (291)
                      .+....+.+|+.+.|.|.+.+. |.+.+.|++++..+.. .++..         ....|.|.+++.+|+|.|+|.+.+. 
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~n~-   83 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV---------GPQRLQVLNASHEDSGAYSCRQRLT-   83 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe---------ccceEEEeecccccCEEEEEEEEeC-
Confidence            4778889999999999999875 5789999999987762 22221         1246999999999999999999987 


Q ss_pred             CceeeeeeEEEEcCCCC-------------------CcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCE
Q psy14540         86 GSQTHSADMRVYDAPGQ-------------------PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL  146 (291)
Q Consensus        86 ~~~~~~~~l~v~~~~~~-------------------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~  146 (291)
                      +.....+.|.|...+..                   |..............+.+|+.+.|.|.+ .+.|.+.+.|++++.
T Consensus        84 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~~~  162 (334)
T 1ry7_B           84 QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA-AGNPTPSISWLKNGR  162 (334)
T ss_dssp             -----------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCC-CCSSCCEEECCBTTB
T ss_pred             CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEc-cCCCCCeEEEEECCE
Confidence            66666777777654321                   1000000011233567899999999998 688999999999998


Q ss_pred             eccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        147 PILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                      .+....+.....                                       .......|.|.++..+|+|.|+|.+.|..
T Consensus       163 ~~~~~~~~~~~~---------------------------------------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  203 (334)
T 1ry7_B          163 EFRGEHRIGGIK---------------------------------------LRHQQWSLVMESVVPSDRGNYTCVVENKF  203 (334)
T ss_dssp             CCCTTSSTTCCC---------------------------------------CCTTTTEEEECSCCGGGCCCEEEEEEETT
T ss_pred             ECccccccccee---------------------------------------cccceEEEEECCCCcccCEEEEEEEEeCC
Confidence            775443210000                                       00113467888888888888999998888


Q ss_pred             ccCCceeEEEEecC----CCCCCC--CcccccCCceEEEEEEeecCCCCceEEEEE----CCEEcc
Q psy14540        227 ASDNHSSNLRVNVP----PHIGPF--TFGELMEGVRTQVACVVQSGDLPLSLQWYK----NGLAIS  282 (291)
Q Consensus       227 ~~~~~~~~l~v~~~----p~~~~~--~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~----~~~~l~  282 (291)
                      +.....+.|.|...    |.+...  ....+.+|+.++|.|.+ .+.|.+.|.|++    ||..+.
T Consensus       204 g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~g~~~~  268 (334)
T 1ry7_B          204 GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVG  268 (334)
T ss_dssp             EEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCC-BCSSCEEEEEEECCCGGGCSBC
T ss_pred             CCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEE-ecCCCCeEEEEECCcCCCcccc
Confidence            77777778888652    333322  22238899999999999 889999999999    777664

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=1.9e-29  Score=199.45  Aligned_cols=225  Identities=16%  Similarity=0.153  Sum_probs=144.3

Q ss_pred             cceeeeecCCcEEEEEEecCCCC-----------CeeEEEECCeecCCC-eeE---eceEEeeccceEEEEEEeecCCCC
Q psy14540          9 FIQQTLQPGPPVSLKCIATGNPT-----------PHISWKLDGYPLAGD-RFV---MGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~~~-----------~~v~W~~~~~~~~~~-~~~---~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      .....+.+|+.+.|.|.+.+.|.           +.+.|++++...... ...   ........+   ..|.|.+++.+|
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D   90 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK---DVLWFRPTLLND   90 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEET---TEEEESSCCGGG
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecC---CEEEEccCChhh
Confidence            35567999999999999987554           899999987422100 000   000111111   359999999999


Q ss_pred             CeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEe----eCCCCCceeEEeECCEecc
Q psy14540         74 SGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV----TKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus        74 ~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~~~W~~~~~~~~  149 (291)
                      +|.|+|.+.+..+.....+.|.|...+....   .....+....+.+|+.+.|.|.+    ..+.|.+.+.|++++..+.
T Consensus        91 ~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~  167 (349)
T 4dep_C           91 TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFN---SPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ  167 (349)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECCCTTSC---CSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECC
T ss_pred             CEEEEEEEecCCceEEEEEEEEEecCCcccC---cccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECC
Confidence            9999999999888888888888887553221   11122334577899999999974    1467899999999998875


Q ss_pred             CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-cc
Q psy14540        150 SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-AS  228 (291)
Q Consensus       150 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~  228 (291)
                      ........                                            ...|.|.++..+|+|.|+|.|.|.. +.
T Consensus       168 ~~~~~~~~--------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~n~~~g~  203 (349)
T 4dep_C          168 NFNNVIPE--------------------------------------------GMNLSFLIALISNNGNYTCVVTYPENGR  203 (349)
T ss_dssp             SCSSEEEE--------------------------------------------TTEEEEESCCGGGCEEEEEEEEEEETTE
T ss_pred             Cccceeec--------------------------------------------CCEEEEeeeeecCCcEEEEEEEEeeCCE
Confidence            43222111                                            2356677777777777777777765 33


Q ss_pred             C---CceeEEEEec------CCCCCCCCcc---cccCCceEEEEEEeec---CCCCceEEEEECCEEccC
Q psy14540        229 D---NHSSNLRVNV------PPHIGPFTFG---ELMEGVRTQVACVVQS---GDLPLSLQWYKNGLAISQ  283 (291)
Q Consensus       229 ~---~~~~~l~v~~------~p~~~~~~~~---~~~~g~~v~l~C~~~~---~~p~~~v~W~~~~~~l~~  283 (291)
                      .   +..+.|.|..      +|.+......   .+.+|+.++|.|.+..   +.|.+.+.|++||..+..
T Consensus       204 ~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~  273 (349)
T 4dep_C          204 TFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDD  273 (349)
T ss_dssp             EEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC----
T ss_pred             EEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccc
Confidence            2   5666677765      4555544432   4789999999999933   578899999999998865

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=5.6e-30  Score=199.63  Aligned_cols=221  Identities=21%  Similarity=0.268  Sum_probs=152.0

Q ss_pred             ecceeeeecCCcEEEEEEecCCC-CCeeEEEECCeecC-----CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLA-----GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ......+.+|+.+.|.|.+.+.+ .+.+.|++++..+.     ..++..      .+   ..|.|.+++.+|+|.|+|.+
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~------~~---~~L~i~~v~~~D~G~Y~C~a   81 (315)
T 1itb_B           11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ------HK---EKLWFVPAKVEDSGHYYCVV   81 (315)
T ss_dssp             CCCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEE------CS---SBEECTTCCGGGCSCCEECC
T ss_pred             CceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEec------cC---CeEEECCCChhhCEEEEEEE
Confidence            34456899999999999998866 78999999986543     111111      11   25999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee-----CCCCCceeEEeECCEeccCCCceEE
Q psy14540         82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT-----KGDPPLTISWLKNGLPILSDAEITI  156 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~~p~~~~~W~~~~~~~~~~~~~~~  156 (291)
                      .+..+.....+.+.+...+...   ...........+..|+.+.|.|.+.     .+.|.+.+.|++++..+........
T Consensus        82 ~n~~g~~~~~~~v~v~~~~p~~---~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~  158 (315)
T 1itb_B           82 RNSSYCLRIKISAKFVENEPNL---CYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFS  158 (315)
T ss_dssp             CSSSCCCCEECCCEEECCCTTS---SSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEE
T ss_pred             eCCceEEEEEEEEEEeCCCCCc---ccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEe
Confidence            9887776666666665433111   0000111235678899999999873     6889999999999988854322111


Q ss_pred             eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEee-eCCccC---Cce
Q psy14540        157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS-NTVASD---NHS  232 (291)
Q Consensus       157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~-~~~~~~---~~~  232 (291)
                      .                                           ....|.|.++..+|+|.|+|.|. |..+..   ...
T Consensus       159 ~-------------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~  195 (315)
T 1itb_B          159 G-------------------------------------------VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRV  195 (315)
T ss_dssp             E-------------------------------------------ETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred             e-------------------------------------------cCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEE
Confidence            1                                           02245666666666666666666 444433   333


Q ss_pred             eEEEEe-----cCCCCCCCCcc--cccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        233 SNLRVN-----VPPHIGPFTFG--ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       233 ~~l~v~-----~~p~~~~~~~~--~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      +.+.+.     .+|.+...+..  .+.+|+.++|.|.+ .|.|.|.+.|++||..+...
T Consensus       196 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~i~~~  253 (315)
T 1itb_B          196 IEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDED  253 (315)
T ss_dssp             EEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEE-EECTTSEEEEEETTEECCTT
T ss_pred             EEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEE-ecCCCCeeEEEECCEECCcc
Confidence            334333     45666655543  38999999999999 88999999999999999764

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.97  E-value=2.1e-29  Score=203.05  Aligned_cols=231  Identities=26%  Similarity=0.402  Sum_probs=172.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ||.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..........  ....  ..|.|.+++.+|+|.|+|.+
T Consensus       121 p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~--~~L~i~~~~~~d~G~Y~C~~  196 (403)
T 3laf_A          121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVV--VLPS--GALQISRLQPGDSGVYRCSA  196 (403)
T ss_dssp             CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEE--ECTT--SCEEECSCCGGGCEEEEEEE
T ss_pred             CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEE--EcCC--ceEEEcccccccCEEEEEEE
Confidence            5667777778889999999999999888888999999998774111000000  1111  25899999999999999999


Q ss_pred             eCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540         82 TNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        82 ~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      .+..+. ......+.|...+..+... .....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+........... 
T Consensus       197 ~n~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~-  273 (403)
T 3laf_A          197 RNPASTRTGNEAEVRILSDPGLHRQL-YFLQRPSNVIAIEGKDAVLECCV-SGYPPPSFTWLRGEEVIQLRSKKYSLLG-  273 (403)
T ss_dssp             ECSSCCCBCCCEEEEEECCCCCCEEE-EEEECCCCEEEETTSCEEECCEE-EEESCCEEEEEETTEECCCSSSSEEEET-
T ss_pred             EcCCCceeccceeEEEecCCCcccCc-eEecCCCceEecCCCcEEEEEEc-CCCCCCeEEEEECCeeccCCCceEEECC-
Confidence            987665 3456777887766443222 22234455678899999999999 5888899999999998865443222211 


Q ss_pred             CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe-----------------------------------------
Q psy14540        161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN-----------------------------------------  199 (291)
Q Consensus       161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~-----------------------------------------  199 (291)
                        ...|.|..+..+|.|.|+|.+.|..+.......+.+.                                         
T Consensus       274 --~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~  351 (403)
T 3laf_A          274 --GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGD  351 (403)
T ss_dssp             --TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTE
T ss_pred             --ccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCE
Confidence              2469999999999999999999988766555444411                                         


Q ss_pred             ----------ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        200 ----------EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       200 ----------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                                .....|.|..+..+|+|.|+|.|.|..|.....+.|.|..||
T Consensus       352 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          352 VVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             ECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             ECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence                      114679999999999999999999999999999999887765

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.97  E-value=3.2e-28  Score=178.85  Aligned_cols=198  Identities=27%  Similarity=0.446  Sum_probs=142.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeec-CCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV-RVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~C~   80 (291)
                      ||.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+........   .......+.|.|.++ +..|+|.|+|.
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~~d~G~Y~C~   82 (212)
T 2yd6_A            6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVI---EFDDGSGSVLRIQPLRTPRDEAIYECV   82 (212)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEE---EEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred             CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEE---EEcCCCceEEEEeccCCCCCCeEEEEE
Confidence            78999999999999999999999999888899999999998875433221   112233467999999 59999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC---ceEEe
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA---EITIR  157 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~---~~~~~  157 (291)
                      +.+..+.....+.|.|...+..+.........+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....   +....
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~g~~l~~~~~~~~~~~~  161 (212)
T 2yd6_A           83 ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDTSNNNGRIKQL  161 (212)
T ss_dssp             EEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEEC------CCEEEE
T ss_pred             EEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEe-cCCCCCeEEEEECCccccCcCCCceEEEE
Confidence            99888888888888888654332222233334455678899999999999 688999999999998875431   11100


Q ss_pred             ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEE
Q psy14540        158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLR  236 (291)
Q Consensus       158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~  236 (291)
                                                              .......|.|.++..+|+|.|+|.|.|..|. .+....|.
T Consensus       162 ----------------------------------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~  201 (212)
T 2yd6_A          162 ----------------------------------------RSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLY  201 (212)
T ss_dssp             ----------------------------------------EETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ----------------------------------------ecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEE
Confidence                                                    0011356777888888888888888888765 35566777


Q ss_pred             EecCCCC
Q psy14540        237 VNVPPHI  243 (291)
Q Consensus       237 v~~~p~~  243 (291)
                      |..++.+
T Consensus       202 ~~~~~~~  208 (212)
T 2yd6_A          202 VRGTKHH  208 (212)
T ss_dssp             EEC----
T ss_pred             EEecccc
Confidence            7776654

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=8.9e-29  Score=192.56  Aligned_cols=220  Identities=16%  Similarity=0.248  Sum_probs=147.6

Q ss_pred             cceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540          9 FIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      +....+.+|+.+.|.|.... .|.+.+.|++++..+. ..++...     .......|.|.+++.+|+|.|+|.+.+..|
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~-----~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g   82 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVE-----SKGNKTKMTFKDLGMDDLGIYSCDVTDTDG   82 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEE-----EETTEEEEEESSCCGGGCEEEEEEESSSCC
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEE-----EeCCEEEEEECcCCccCCEEEEEEEEeCCC
Confidence            34567889999999998864 7888999999999887 4443332     233446799999999999999999998776


Q ss_pred             ceeeeeeEEEEc------------CCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCce
Q psy14540         87 SQTHSADMRVYD------------APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI  154 (291)
Q Consensus        87 ~~~~~~~l~v~~------------~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~  154 (291)
                      ... ...+.|..            .|..+   .   .......+.+|+.+.|.|.+..+.|.+.+.|++++..+....+.
T Consensus        83 ~~~-s~~l~v~~~~~~~~~~~~~~~p~~~---~---~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~  155 (312)
T 2y23_A           83 IAS-SYLIDEEELKRLLALSHEHKFPTVP---V---KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKY  155 (312)
T ss_dssp             CCE-EEEECHHHHHHHHHHHHHHHSCBCC---E---EEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSC
T ss_pred             cEE-EEEEEEeeeeeeecccccCCCCccc---c---ccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcE
Confidence            433 44454432            22111   1   11125678899999999999448899999999999998776554


Q ss_pred             EEeccC-CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCcee
Q psy14540        155 TIRSSG-EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  233 (291)
Q Consensus       155 ~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  233 (291)
                      .+.... .....                                       |.|.++..+|+|.|+|.+.+.....  ..
T Consensus       156 ~~~~~~~~~~~~---------------------------------------L~i~~~~~~d~G~Y~C~~~~~~~~~--~~  194 (312)
T 2y23_A          156 KMHIDRNTGIIE---------------------------------------MFMEKLQDEDEGTYTFQLQDGKATN--HS  194 (312)
T ss_dssp             EEEEETTTTEEE---------------------------------------EEESCCCGGGCEEEEEEEESSSCEE--EE
T ss_pred             EEEEccCCCEEE---------------------------------------EEEccCCcccCEeEEEEEEeCCceE--EE
Confidence            433221 22233                                       4455555555555555554332211  11


Q ss_pred             EEEE---------------------ecCCCCCCCCcccccCCceEEEEEEeecCCCCc-eEEEEECCEEcc
Q psy14540        234 NLRV---------------------NVPPHIGPFTFGELMEGVRTQVACVVQSGDLPL-SLQWYKNGLAIS  282 (291)
Q Consensus       234 ~l~v---------------------~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~-~v~W~~~~~~l~  282 (291)
                      .+.+                     ..+|.+.......+.+|+.+.|.|.+ .+.|++ .+.|+++|..+.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~g~~~~  264 (312)
T 2y23_A          195 TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREIS  264 (312)
T ss_dssp             EEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEE-ESCCSSCEEEEEETTEEEE
T ss_pred             EEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEE-cCCCCCCEEEEeeCCEECC
Confidence            1221                     11243332223348899999999999 777777 999999999987

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.96  E-value=7.4e-28  Score=176.92  Aligned_cols=146  Identities=27%  Similarity=0.506  Sum_probs=116.7

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC--CCeeEeceEEeeccceEEEEEEeecCC-CCCeEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDVISHVNISSVRV-EDSGIY   77 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y   77 (291)
                      .||.|...|....+.+|+.++|.|.+.+.|.+.+.|++++..+.  ..++...    ....+.+.|.|.+++. .|+|.|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~~d~G~Y   80 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVL----EQPGGISILRIEPVRAGRDDAPY   80 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEE----EETTTEEEEEESSCCTTTTCSEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEE----EcCCCeEEEEEEecCCCCcCceE
Confidence            48999999999999999999999999988888999999999886  2333221    1233447899999999 999999


Q ss_pred             EEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540         78 QCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD  151 (291)
Q Consensus        78 ~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~  151 (291)
                      +|.+.+..+. ....+.|.|...+..+.........+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus        81 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~  154 (212)
T 2yd1_A           81 ECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKA-IGNPTPNIYWIKNQTKVDMS  154 (212)
T ss_dssp             EEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEE-ECSSCCEEEEEETTEECCTT
T ss_pred             EEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEe-ccCCCCeEEEEECCeEcccC
Confidence            9999988887 7788889998765443222233344455778899999999999 68899999999999888653

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.96  E-value=3e-28  Score=198.64  Aligned_cols=269  Identities=17%  Similarity=0.239  Sum_probs=169.3

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISH   63 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~   63 (291)
                      +..|....+.+|++++|.|.+.+.+  .+.+.|+++.  ..+.                  ..++...   .......++
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~   80 (444)
T 1igt_B            4 LQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTIS---RDNAKNTLY   80 (444)
T ss_dssp             EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEE---EETTTTEEE
T ss_pred             EecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEE---EeCCCCeEE
Confidence            4456778899999999999998753  5779999852  2210                  0111111   011234578


Q ss_pred             EEEeecCCCCCeEEEEEEeCCCCc---eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-ee
Q psy14540         64 VNISSVRVEDSGIYQCTATNRVGS---QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TI  139 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~  139 (291)
                      |.|.+++.+|+|.|+|.+.+..+.   ....+.|.|......++  ......+ ...+.+|+.++|.|.+.+..|.+ .+
T Consensus        81 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v  157 (444)
T 1igt_B           81 LQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAP--SVYPLAP-VCGDTTGSSVTLGCLVKGYFPEPVTL  157 (444)
T ss_dssp             EEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCC--EEEEECC-CSSCCCSSCEEEEEEEEEEBSSCCEE
T ss_pred             EEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCC--ceeEecc-cccCCCCCcEEEEEEEcceeCCCcEE
Confidence            999999999999999999876543   22345677764221111  1111111 12347899999999995445776 99


Q ss_pred             EEeECCEeccCCCceEEeccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCC-------------------------
Q psy14540        140 SWLKNGLPILSDAEITIRSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNH-------------------------  192 (291)
Q Consensus       140 ~W~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-------------------------  192 (291)
                      .|++++..+...........+.+  ...|.|..+..+| |.|+|.|.|..+....                         
T Consensus       158 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  236 (444)
T 1igt_B          158 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLL  236 (444)
T ss_dssp             EEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCC
T ss_pred             EEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccC
Confidence            99998876421110000011111  3468888888889 9999999998764200                         


Q ss_pred             -ceE--EE----------------------E---ec------------------------------cceEEEEeeeecCC
Q psy14540        193 -SSN--LR----------------------V---NE------------------------------YTSSLSIATLSTGH  214 (291)
Q Consensus       193 -~~~--~~----------------------~---~~------------------------------~~~~l~i~~~~~~~  214 (291)
                       ...  +.                      .   ..                              ..+.|.|.++..+|
T Consensus       237 ~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d  316 (444)
T 1igt_B          237 GGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMS  316 (444)
T ss_dssp             CCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHT
T ss_pred             CCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhcc
Confidence             011  11                      1   00                              01257777778889


Q ss_pred             CeeEEEEeeeCCccCCceeEE----EEecCCCCCCCCccc--ccCCceEEEEEEeecCCCCc-eEEEEECCEEcc
Q psy14540        215 SGNYTCVASNTVASDNHSSNL----RVNVPPHIGPFTFGE--LMEGVRTQVACVVQSGDLPL-SLQWYKNGLAIS  282 (291)
Q Consensus       215 ~g~y~C~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~--~~~g~~v~l~C~~~~~~p~~-~v~W~~~~~~l~  282 (291)
                      +|.|+|.|.|..+.......+    .+..+|.+...+...  +..| .++|.|.+.+.+|++ .|.|+|||.++.
T Consensus       317 ~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~  390 (444)
T 1igt_B          317 GKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTEL  390 (444)
T ss_dssp             TCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             CCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEcc
Confidence            999999999988765333333    334567665443332  4455 599999994336665 999999999884

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.96  E-value=2.8e-28  Score=190.06  Aligned_cols=223  Identities=16%  Similarity=0.165  Sum_probs=151.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.|...|. ..+.+|++++|.|.+.+. .+.+.|+|+|..+.....        .......|.|.+++.+|+|.|+|.+
T Consensus        24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~--------~~~~~~~L~I~~v~~~D~G~Y~C~a   93 (316)
T 3vh8_G           24 KPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH--------GRIFQESFNMSPVTTAHAGNYTCRG   93 (316)
T ss_dssp             CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH--------HCCBSSCEEECSCCGGGCEEEEEEE
T ss_pred             CCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeec--------CCcceEEEEECCCCcccCeEEEEEE
Confidence            788888887 578899999999999876 678999999986542110        0111245889999999999999998


Q ss_pred             eCCC-----CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540         82 TNRV-----GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI  156 (291)
Q Consensus        82 ~~~~-----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~  156 (291)
                      .+..     +..+..+.|.|...+..|.    ....+. ..+.+|+.++|.|.+ . .+.+.+.|++++..+........
T Consensus        94 ~~~~~~~~~~~~s~~~~l~V~~~~~~p~----~~~~~~-~~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~  166 (316)
T 3vh8_G           94 SHPHSPTGWSAPSNPVVIMVTGNHRKPS----LLAHPG-PLVKSGERVILQCWS-D-IMFEHFFLHKEGISKDPSRLVGQ  166 (316)
T ss_dssp             BCSSSSSSBCCCCCCEEEEEECSSCCCE----EEEESC-SEEETTCCEEEEEEE-S-SCCSEEEEEETTCCSCCEEEECE
T ss_pred             EcCCCCcceecCCCcEEEEEecCCCCCe----EEecCC-CccCCCCeEEEEEcC-C-CCCcEEEEEECCCccccceeeee
Confidence            7532     2344556777765443221    111222 237899999999998 3 45678999999877643211100


Q ss_pred             eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-----CCc
Q psy14540        157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-----DNH  231 (291)
Q Consensus       157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-----~~~  231 (291)
                      .....                                       ....|.|.++..+|+|.|+|.|.|..+.     .+.
T Consensus       167 ~~~~~---------------------------------------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~  207 (316)
T 3vh8_G          167 IHDGV---------------------------------------SKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSD  207 (316)
T ss_dssp             EETTE---------------------------------------EEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCC
T ss_pred             ecCCC---------------------------------------ceEEEEECCCChhhCceEEEEEecCCCCccccCCCC
Confidence            00000                                       1345667777777778888888776543     255


Q ss_pred             eeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCceEEEEECCEEcc
Q psy14540        232 SSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS  282 (291)
Q Consensus       232 ~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~  282 (291)
                      .+.|.|..   +|.+...+...+.+|+.++|.|.+ . .|.+.+.|+|+|..+.
T Consensus       208 ~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~-~~~~~~~W~k~g~~~~  259 (316)
T 3vh8_G          208 PLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSS-R-SSYDMYHLSREGGAHE  259 (316)
T ss_dssp             CEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEE-S-SCCSEEEEEETTSSCC
T ss_pred             CEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEEC-C-CCCcEEEEEECCCcCC
Confidence            66676653   344544444458899999999999 5 4678999999998765

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.96  E-value=2e-27  Score=195.23  Aligned_cols=274  Identities=17%  Similarity=0.284  Sum_probs=173.2

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC-------CCe-e-----EeceEEee--ccceEEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA-------GDR-F-----VMGQYMSL--HGDVISHVN   65 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-------~~~-~-----~~~~~~~~--~~~~~~~l~   65 (291)
                      .+..|..+.+.+|++++|.|.+.+.+  ...+.|++..  ....       ... .     ...+....  .....++|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   83 (475)
T 1iga_A            4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG   83 (475)
T ss_pred             eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence            45567888999999999999998643  5679999853  2110       000 0     00111111  123457899


Q ss_pred             EeecCCCCCeEEEEEEeCCCCc------eeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-c
Q psy14540         66 ISSVRVEDSGIYQCTATNRVGS------QTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-L  137 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~~~~------~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~  137 (291)
                      |.+++.+|+|.|.|.+.+..+.      ....+.|.|.... ..|  .... ..+  ..+.+|+.++|.|.+.+.+|. +
T Consensus        84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~i~~-~~~--~~~~~g~~v~L~C~~~g~~P~~p  158 (475)
T 1iga_A           84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSP--KVFP-LSL--CSTQPDGNVVIACLVQGFFPQEP  158 (475)
T ss_pred             ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCC--eEEe-cCc--cccCCCCeEEEEEEEeeecCCCc
Confidence            9999999999999999876541      2344567776422 112  1111 111  123689999999999544466 4


Q ss_pred             -eeEEeECCEeccCCCceEE--eccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCC-CCce-----------------
Q psy14540        138 -TISWLKNGLPILSDAEITI--RSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASD-NHSS-----------------  194 (291)
Q Consensus       138 -~~~W~~~~~~~~~~~~~~~--~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~-----------------  194 (291)
                       .+.|++++...........  ..++..  ...|.|..+..+|.|.|+|.|.|..+.. ...+                 
T Consensus       159 ~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~  238 (475)
T 1iga_A          159 LSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPP  238 (475)
T ss_pred             eEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccc
Confidence             9999998753221110001  111111  2357787888889999999999986531 0000                 


Q ss_pred             ---------EE--E------------------Eec---------------------------------cceEEEEeeeec
Q psy14540        195 ---------NL--R------------------VNE---------------------------------YTSSLSIATLST  212 (291)
Q Consensus       195 ---------~~--~------------------~~~---------------------------------~~~~l~i~~~~~  212 (291)
                               .+  .                  +..                                 ..+.|.|..+..
T Consensus       239 ~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~  318 (475)
T 1iga_A          239 TPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW  318 (475)
T ss_pred             cCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEECCCCcCCccccCceECCCCCEEEEEEEEEchHHh
Confidence                     01  0                  000                                 012477888888


Q ss_pred             CCCeeEEEEeeeCCccCCceeEEEE---ecCCCCCCCCccc--ccCCceEEEEEEeecC-CCC-ceEEEEECCEEccCC
Q psy14540        213 GHSGNYTCVASNTVASDNHSSNLRV---NVPPHIGPFTFGE--LMEGVRTQVACVVQSG-DLP-LSLQWYKNGLAISQP  284 (291)
Q Consensus       213 ~~~g~y~C~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~--~~~g~~v~l~C~~~~~-~p~-~~v~W~~~~~~l~~~  284 (291)
                      +|+|.|+|.|.|..+.......|.+   ..+|.+...+...  +.+|+.+.|.|.+ .| +|+ +.|.|+|||.+|...
T Consensus       319 ~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~-~g~~P~~~~v~W~k~g~~l~~~  396 (475)
T 1iga_A          319 NHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLA-RGFSPKDVLVRWLQGSQELPRE  396 (475)
T ss_pred             ccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEE-eeeECCCCEEEEEECCEECCCC
Confidence            9999999999998877655445532   4567665544432  6789999999999 55 443 599999999998654

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=2.6e-29  Score=197.26  Aligned_cols=234  Identities=16%  Similarity=0.285  Sum_probs=159.6

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCC----CCCeeEEEECC--eecC----------------CCeeEeceEEeeccce
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGN----PTPHISWKLDG--YPLA----------------GDRFVMGQYMSLHGDV   60 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~~--~~~~----------------~~~~~~~~~~~~~~~~   60 (291)
                      +.++..+..+.+.+|++++|.|.+.+.    +.+.+.|++++  ....                ..++...    .....
T Consensus        15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~----~~~~~   90 (331)
T 3u83_A           15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFL----RPSFT   90 (331)
T ss_dssp             ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEES----SCSSS
T ss_pred             cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEec----ccCCC
Confidence            455666777899999999999998875    44569999954  1110                1111111    11222


Q ss_pred             EEEEEEeecCCCCCeEEEEEEe-CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCC---CceEEEEEeeCCCCC
Q psy14540         61 ISHVNISSVRVEDSGIYQCTAT-NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG---DRAGVQCLVTKGDPP  136 (291)
Q Consensus        61 ~~~l~i~~~~~~d~G~y~C~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~l~C~~~~~~p~  136 (291)
                      ..+|.|.+++.+|+|.|+|.+. +..+.....+.|.|...|..     ..........+.+|   +.+.|.|.+..+.|.
T Consensus        91 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~-----~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~  165 (331)
T 3u83_A           91 DGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN-----WIEGTQAVLRAKKGQDDKVLVATCTSANGKPP  165 (331)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEE-----EEEECSSCEEECTTCCCCEEEEEEEEEEEBSC
T ss_pred             CceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcc-----eeecCCCceeecCCCccceEEEEEEecCCcCC
Confidence            3569999999999999999854 55566777888888875521     12223445667788   779999984478999


Q ss_pred             ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCe
Q psy14540        137 LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSG  216 (291)
Q Consensus       137 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g  216 (291)
                      +.+.|++++......              ...    ....|.+.-                    ...|.|..+..+|+|
T Consensus       166 ~~i~W~~~~~~~~~~--------------~~~----~~~~~~~~~--------------------~~~L~i~~~~~~d~G  207 (331)
T 3u83_A          166 SVVSWETRLKGEAEY--------------QEI----RNPNGTVTV--------------------ISRYRLVPSREAHQQ  207 (331)
T ss_dssp             CEEEEEESSCCEEEE--------------EEE----ECTTSCEEE--------------------EEEEEECCCGGGTTC
T ss_pred             ceEEEEcCCCCcccc--------------cee----ECCCCcEEE--------------------EEEEEEEeccccCCC
Confidence            999999963221100              000    011122211                    246788888999999


Q ss_pred             eEEEEeeeCCccCCceeEEEEecCCCCCCCCcc--cccCCceEEEEEEeecCCCCce-EEEEECCEEccCC
Q psy14540        217 NYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG--ELMEGVRTQVACVVQSGDLPLS-LQWYKNGLAISQP  284 (291)
Q Consensus       217 ~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~--~~~~g~~v~l~C~~~~~~p~~~-v~W~~~~~~l~~~  284 (291)
                      .|+|.|.|..+..+.++.|.|..+|.+...+..  .+.+|+.++|.|.+ .+.|.+. +.|+++|..+...
T Consensus       208 ~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~i~W~~~~~~~~~~  277 (331)
T 3u83_A          208 SLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA-DANPPATEYHWTTLNGSLPKG  277 (331)
T ss_dssp             EEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEE-EEESCCCEEEEEETTBSCCTT
T ss_pred             EEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeC-cCCCCCCEEEEEECCCccccc
Confidence            999999999888888888888887766543332  28899999999999 8888887 9999999887553

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.96  E-value=1.8e-29  Score=196.18  Aligned_cols=229  Identities=18%  Similarity=0.263  Sum_probs=156.1

Q ss_pred             ceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCC------e--eEe------ceEEeeccceEEEEEEeecCCCCC
Q psy14540         10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGD------R--FVM------GQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~------~--~~~------~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      ..+++.+|++++|.|.+.+ .+.+.+.|+|++......      .  ...      ...........++|.|.+++.+|+
T Consensus         7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   86 (308)
T 4fom_A            7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS   86 (308)
T ss_dssp             CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred             CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence            3578899999999999865 445679999965322100      0  000      000011112235699999999999


Q ss_pred             eEEEEEEeCC-CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCc
Q psy14540         75 GIYQCTATNR-VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE  153 (291)
Q Consensus        75 G~y~C~~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~  153 (291)
                      |.|+|.+.+. .+.......+.+...+..     .....+.......|+.+.|.|.+..+.|.+.+.|++++..+.....
T Consensus        87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~  161 (308)
T 4fom_A           87 GKYICKAVTFPLGNAQSSTTVTVLVEPTV-----SLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT  161 (308)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEEBCCEE-----EEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE
T ss_pred             EEEEEEEeeCCCcceeeeeEEEeeecccc-----ccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc
Confidence            9999999865 445666667777665421     1223334455667899999998767899999999999887653321


Q ss_pred             eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE-----------------------------------
Q psy14540        154 ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV-----------------------------------  198 (291)
Q Consensus       154 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~-----------------------------------  198 (291)
                      ............|.|..+..+|.|.|+|.|.|..+.......+.+                                   
T Consensus       162 ~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~  241 (308)
T 4fom_A          162 SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPP  241 (308)
T ss_dssp             ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESC
T ss_pred             eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCC
Confidence            111111112356899999999999999999998776544333220                                   


Q ss_pred             ------------------eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540        199 ------------------NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI  243 (291)
Q Consensus       199 ------------------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~  243 (291)
                                        ......+.|.++..+|+|.|+|.|.|..|..+.++.|.|.++|.-
T Consensus       242 p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~~  304 (308)
T 4fom_A          242 PFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPHH  304 (308)
T ss_dssp             EEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC--
T ss_pred             CcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCCC
Confidence                              001344557788999999999999999999999999999998863

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.96  E-value=3.7e-28  Score=176.03  Aligned_cols=186  Identities=25%  Similarity=0.399  Sum_probs=137.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC---eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD---RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      ||.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+...   ++..     ......+.|.|.+++..|+|.|+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~   79 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQI-----SFSDGRAKLTIPAVTKANSGRYS   79 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEE-----EEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEE-----EeCCCEEEEEECCCCcccCEEEE
Confidence            788999999999999999999999988888899999999887632   2211     11233477999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      |.+.+..+.......+.|......|    .....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....
T Consensus        80 C~~~n~~~~~~~~~~l~v~~~~~~p----~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~  154 (194)
T 2a38_A           80 LKATNGSGQATSTAELLVKAETAPP----NFVQRLQSMTVRQGSQVRLQVRV-TGIPTPVVKFYRDGAEIQSSLDFQISQ  154 (194)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCEEE----EEEECCCCEEECTTEEEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEE
T ss_pred             EEEEcCCceEeEEEEEEEccCCCCC----EEEeCCccEEEcCCCEEEEEEEE-EEecCCeEEEEECCEECCCCCcEEEEE
Confidence            9999888777777788887543222    22233445678899999999999 688999999999999887655443322


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                      .+.                                        ...|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus       155 ~~~----------------------------------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          155 EGD----------------------------------------LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             ETT----------------------------------------EEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCC----------------------------------------EEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence            211                                        224666666666777777777776666555555554

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.96  E-value=1.7e-28  Score=192.32  Aligned_cols=211  Identities=18%  Similarity=0.225  Sum_probs=146.3

Q ss_pred             cceeeeecCCcEEEEEEecCC---------CCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCe-EE
Q psy14540          9 FIQQTLQPGPPVSLKCIATGN---------PTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSG-IY   77 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~---------~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y   77 (291)
                      .....+.+|+.+.|.|.+.+.         |.+.+.|++++..+.. .+.          .....|.|.+++.+|+| .|
T Consensus        36 ~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~----------~~~~~L~i~~v~~~D~Gs~Y  105 (329)
T 3oq3_B           36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR----------VKNGDLWIANYTSNDSHRRY  105 (329)
T ss_dssp             EEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT----------EETTEEEESSCCGGGGGCCE
T ss_pred             cceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce----------eecceEEEcCCChHhCCCcE
Confidence            355679999999999998873         5578999999876541 111          01235899999999999 99


Q ss_pred             EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCC-ceE
Q psy14540         78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDA-EIT  155 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~-~~~  155 (291)
                      +|.+.+..|.......+.+...+  |. ..   .......+.+|+.+.|.|.+ .+.| .+.+.|++++..+.... ++.
T Consensus       106 ~C~a~n~~g~~~~~~~~~v~~~~--p~-~~---~~~~~~~~~~G~~v~L~C~~-~g~p~~~~i~W~k~~~~l~~~~~~~~  178 (329)
T 3oq3_B          106 LCTVTTKNGDCVQGIVRSHIRKP--PS-CI---PETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELIIDGTKYS  178 (329)
T ss_dssp             EEEEECTTSCEEEEEEEEEECCC--CS-CE---EEEEETTSSTTTCEEEECCC-CSCCCCCEEEEEETTEECCCSSSSEE
T ss_pred             EEEEEeCCCceeeEEEEEEEcCC--Cc-Ee---ccccceEEeCCCcEEEEecc-CCCCCCceEEEEECCccCCCCCceEe
Confidence            99999887765444443444433  11 11   11112345689999999998 6888 89999999998874322 111


Q ss_pred             EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC--CccCCce-
Q psy14540        156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT--VASDNHS-  232 (291)
Q Consensus       156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~--~~~~~~~-  232 (291)
                      ..                                            ...|.|.++..+|+|.|+|.|.|.  .+..... 
T Consensus       179 ~~--------------------------------------------~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~  214 (329)
T 3oq3_B          179 QS--------------------------------------------GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV  214 (329)
T ss_dssp             EE--------------------------------------------TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEE
T ss_pred             cC--------------------------------------------CCEEEEeecChhhCEEEEEEEEecccCCCceeEE
Confidence            11                                            235777777777888888888876  4443333 


Q ss_pred             ---eEEEEecCCC----CCCCCcccccCCceEEEEEEeecCCC---Cc-eEEEEECCEEc
Q psy14540        233 ---SNLRVNVPPH----IGPFTFGELMEGVRTQVACVVQSGDL---PL-SLQWYKNGLAI  281 (291)
Q Consensus       233 ---~~l~v~~~p~----~~~~~~~~~~~g~~v~l~C~~~~~~p---~~-~v~W~~~~~~l  281 (291)
                         +.|.|..+|.    +..+....+.+|+.++|.|.+ .+.|   ++ .+.|+++|..+
T Consensus       215 s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~~~i~v~W~~~g~~i  273 (329)
T 3oq3_B          215 SRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTA-VSTSLLVDDVLIDWENPSGWI  273 (329)
T ss_dssp             EEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEE-EETTCCTTCCEEEEECTTSCB
T ss_pred             EeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEE-EECCCCCCCcEEEEEECCeee
Confidence               6677776652    222233338999999999999 6665   67 89999999885

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.96  E-value=4.6e-28  Score=176.00  Aligned_cols=182  Identities=20%  Similarity=0.316  Sum_probs=131.5

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      .||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...  ++..    .....+.+.|.|.+++..|+|.|+
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~   78 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRI----QEFKGGYHQLIIASVTDDDATVYQ   78 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEE----EEETTTEEEEEECSCCGGGCSEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEE----EEcCCCEEEEEECcCCHHhCEEEE
Confidence            4899999999999999999999999998888999999999887732  2222    122344568999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      |.+.+..+.....+.|.|...+.....  .....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....
T Consensus        79 C~~~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~  155 (197)
T 2j8h_A           79 VRATNQGGSVSGTASLEVEVPAKIHLP--KTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGHYQVIV  155 (197)
T ss_dssp             EEEEETTEEEEEEEEEEEEEEEEECCS--SCBTTBEEEEEETTCCCEEEEEE-EEESCCEEEEEESSCEECSSSSCEEEE
T ss_pred             EEEEECCCceeEEEEEEEcCCCcCCCC--ccccccCeEEEeCCCEEEEEEEE-EecCCCcEEEEECCEEeecCCCEEEEE
Confidence            999988887788888888765422110  11122344678899999999999 588999999999999887665554432


Q ss_pred             cCCceEEEEEee-CCCCCceeEEEEEEecCCCC
Q psy14540        159 SGEYTSSLSIAT-LSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       159 ~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~  190 (291)
                      .. ....|.|.. +..+|.|.|+|.|.|..|..
T Consensus       156 ~~-~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~  187 (197)
T 2j8h_A          156 TR-SFTSLVFPNGVERKDAGFYVVCAKNRFGID  187 (197)
T ss_dssp             CS-SEEEEECTTCCCGGGCEEEEEEEEETTEEE
T ss_pred             cC-CceEEEEeCCCCcccCEeEEEEEEeCCCcE
Confidence            22 234455555 55555555555555554443

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.96  E-value=1e-29  Score=206.68  Aligned_cols=270  Identities=17%  Similarity=0.263  Sum_probs=171.8

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISH   63 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~   63 (291)
                      +..+....+.+|++++|.|.+.+.+  .+.+.|++++  ..+.                  ..++....   ......++
T Consensus         3 l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~   79 (434)
T 1igy_B            3 LQESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTR---DRSSNTAN   79 (434)
T ss_dssp             EECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCB---CGGGCBBC
T ss_pred             eECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEE---ECCCCEEE
Confidence            3456677899999999999998753  6779999863  2110                  01111100   01123457


Q ss_pred             EEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEE
Q psy14540         64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISW  141 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W  141 (291)
                      |.|.+++.+|+|.|+|.+.+..+.......|.|.... ..|  .... ..+ ...+.+|+.++|.|.+.+..|.+ .+.|
T Consensus        80 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P--~i~~-~~~-~~~~~~G~~v~L~C~~~g~~P~p~~v~W  155 (434)
T 1igy_B           80 IHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPP--SVYP-LAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTW  155 (434)
T ss_dssp             EEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCC--CEEE-ECC-CCCCCCTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCC--eEEE-cCC-ccccCCCCcEEEEEEEeeecCCCeEEEE
Confidence            9999999999999999998754444455667776422 112  1111 111 12347899999999995445776 9999


Q ss_pred             eECCEeccCCCceEEeccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCC----------------------ceEEE
Q psy14540        142 LKNGLPILSDAEITIRSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNH----------------------SSNLR  197 (291)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~----------------------~~~~~  197 (291)
                      ++++..+...........+.+  ...|.|..+..+| |.|+|.|.|..+....                      .+.+.
T Consensus       156 ~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~  234 (434)
T 1igy_B          156 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIF  234 (434)
T ss_dssp             TTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEE
T ss_pred             eeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEe
Confidence            999875321100000111111  3468888888888 9999999998775321                      11111


Q ss_pred             -------------------Eec------------------------------------cceEEEEeeeecCCCeeEEEEe
Q psy14540        198 -------------------VNE------------------------------------YTSSLSIATLSTGHSGNYTCVA  222 (291)
Q Consensus       198 -------------------~~~------------------------------------~~~~l~i~~~~~~~~g~y~C~~  222 (291)
                                         +..                                    ..+.|.|..+..+|+|.|+|.|
T Consensus       235 ~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  314 (434)
T 1igy_B          235 PPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRV  314 (434)
T ss_dssp             CCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCB
T ss_pred             CCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEE
Confidence                               000                                    0124677777888999999999


Q ss_pred             eeCCccCC--ceeEE--EEecCCCCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEECCEEccC
Q psy14540        223 SNTVASDN--HSSNL--RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYKNGLAISQ  283 (291)
Q Consensus       223 ~~~~~~~~--~~~~l--~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~~  283 (291)
                      .|..+...  ..+.+  .+..+|.+...+... ...|+.++|.|.+.+.+|+ ++|+|+|||.++..
T Consensus       315 ~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~  381 (434)
T 1igy_B          315 NSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPEN  381 (434)
T ss_dssp             CCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSC
T ss_pred             ECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCC
Confidence            99887543  33333  345577776554433 4467789999999443554 59999999998853

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=189.02  Aligned_cols=217  Identities=19%  Similarity=0.325  Sum_probs=154.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ||.|...+....+.+|++++|.|.+.+.    +.|++++....    ..     ......+.|.|.+++..|+|.|+|.+
T Consensus         4 ~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~----~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~~   70 (292)
T 4dkd_C            4 IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHW----TL-----YSDGSSSILSTNNATFQNTGTYRCTE   70 (292)
T ss_dssp             CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSSC----EE-----CCBTTEEEEEESSCCGGGCSCEEECC
T ss_pred             CceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCce----EE-----eccCceEEEEEcccccccCEEEEEEE
Confidence            7899999989999999999999999863    99997653211    11     11223467999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--ceeEEeEC-CEeccCCCceEEec
Q psy14540         82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LTISWLKN-GLPILSDAEITIRS  158 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~-~~~~~~~~~~~~~~  158 (291)
                      .+..+.....+.|.|..++..      ....+....+.+|+.+.|.|.+. + |.  +.+.|+++ +..+....+.... 
T Consensus        71 ~n~~~~~~~~~~l~V~~~~~~------~~~~~~~~~v~~g~~v~l~C~~~-~-~~~~~~v~W~~~~~~~~~~~~~~~~~-  141 (292)
T 4dkd_C           71 PGDPLGGSAAIHLYVKDPARP------WNVLAQEVVVFEDQDALLPCLLT-D-PVLEAGVSLVRVRGRPLMRHTNYSFS-  141 (292)
T ss_dssp             CC----CCEEECCEECCSSCC------EEESCSEEEEETTSCEECCEEES-S-GGGGSSEEEEEGGGCCCCSSCCEECC-
T ss_pred             ccCCCCcceEEEEEEcCcccc------ccccCCeEEEcCCCcEEEeeeCC-C-CCcceeEEEEecCCCccccCCccccc-
Confidence            987777788888888765421      12234457788999999999994 4 43  78999997 4444332222111 


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEE
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRV  237 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v  237 (291)
                                                                ....|.|.++..+|+|.|+|.+.|..+. .+..+.|.|
T Consensus       142 ------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V  179 (292)
T 4dkd_C          142 ------------------------------------------PWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKV  179 (292)
T ss_dssp             ------------------------------------------SSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEE
T ss_pred             ------------------------------------------CCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEE
Confidence                                                      0123667777788888888888876643 355778888


Q ss_pred             ec----CCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEcc
Q psy14540        238 NV----PPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS  282 (291)
Q Consensus       238 ~~----~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~  282 (291)
                      ..    +|.+...+... +.+|+.+.|.|.+.+..+++.+.|++++..+.
T Consensus       180 ~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~  229 (292)
T 4dkd_C          180 QKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLA  229 (292)
T ss_dssp             ECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCC
T ss_pred             eCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccc
Confidence            76    67666655554 68999999999995444457899999988765

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.96  E-value=3e-27  Score=193.40  Aligned_cols=269  Identities=20%  Similarity=0.348  Sum_probs=163.4

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC------------------CCeeEeceEEeeccceEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA------------------GDRFVMGQYMSLHGDVISH   63 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~   63 (291)
                      ...|....+.+|++++|.|.+.+.+  .+.+.|+|+  +....                  ..++...   .......++
T Consensus         4 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~   80 (457)
T 1hzh_H            4 LVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFT---ADTSANTAY   80 (457)
T ss_dssp             EEECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEE---EETTTTEEE
T ss_pred             EecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEE---EeCCCCEEE
Confidence            3456678899999999999998765  678999984  22110                  0111110   011234578


Q ss_pred             EEEeecCCCCCeEEEEEEeCCCC------------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee
Q psy14540         64 VNISSVRVEDSGIYQCTATNRVG------------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT  131 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~~~~~~------------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  131 (291)
                      |.|.+++.+|+|.|+|.+.+..+            .......|.|...+..++  ..... .....+.+|+.++|.|.+.
T Consensus        81 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~i~~~-~~~~~~~~g~~v~L~C~~~  157 (457)
T 1hzh_H           81 MELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGP--SVFPL-APSSKSTSGGTAALGCLVK  157 (457)
T ss_dssp             EEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCC--EEEEE-CCCSCCCTTCCEEEEEEEE
T ss_pred             EEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCC--eEEec-CccccccCCCcEEEEEEEe
Confidence            99999999999999999987654            223455677765321111  11111 1123457899999999996


Q ss_pred             CCCCC-ceeEEeECCEeccCCCceEE-eccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCC---------------
Q psy14540        132 KGDPP-LTISWLKNGLPILSDAEITI-RSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNH---------------  192 (291)
Q Consensus       132 ~~~p~-~~~~W~~~~~~~~~~~~~~~-~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~---------------  192 (291)
                      ...|. +.+.|++++..+........ ...+..  ...|.|..+..+| |.|+|.|.|..+....               
T Consensus       158 g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~  236 (457)
T 1hzh_H          158 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTC  236 (457)
T ss_dssp             SBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSC
T ss_pred             EEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCccccc
Confidence            44474 89999999865432111111 111211  2468888888889 9999999997653110               


Q ss_pred             ----------ceEE--E-------------------Eecc------------------------------ceEEEEeee-
Q psy14540        193 ----------SSNL--R-------------------VNEY------------------------------TSSLSIATL-  210 (291)
Q Consensus       193 ----------~~~~--~-------------------~~~~------------------------------~~~l~i~~~-  210 (291)
                                ...+  .                   +...                              ...+.+... 
T Consensus       237 ~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l  316 (457)
T 1hzh_H          237 PPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVL  316 (457)
T ss_dssp             CSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEE
Confidence                      0111  1                   0000                              011222221 


Q ss_pred             --ecCC---CeeEEEEeeeCCccCCceeEEE----EecCCCCCCCCccc--ccCCceEEEEEEeecC-CCC-ceEEEEEC
Q psy14540        211 --STGH---SGNYTCVASNTVASDNHSSNLR----VNVPPHIGPFTFGE--LMEGVRTQVACVVQSG-DLP-LSLQWYKN  277 (291)
Q Consensus       211 --~~~~---~g~y~C~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~--~~~g~~v~l~C~~~~~-~p~-~~v~W~~~  277 (291)
                        ...|   +|.|+|.|.|..+.......+.    +..+|.+...+...  +..|+ ++|.|.+ .| +|+ +.|.|+||
T Consensus       317 ~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~-~g~~p~~~~v~W~k~  394 (457)
T 1hzh_H          317 TVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLV-KGFYPSDIAVEWESN  394 (457)
T ss_dssp             CCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEE-EEEBSSCCEEEEEET
T ss_pred             EECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEE-EeEECCCCEEEEEEC
Confidence              1334   9999999998765443333332    34566655443332  55566 9999999 55 443 49999999


Q ss_pred             CEEccC
Q psy14540        278 GLAISQ  283 (291)
Q Consensus       278 ~~~l~~  283 (291)
                      |.+|.+
T Consensus       395 g~~l~~  400 (457)
T 1hzh_H          395 GQPENN  400 (457)
T ss_dssp             TEECCC
T ss_pred             CEECcc
Confidence            999854

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.96  E-value=1.6e-27  Score=181.08  Aligned_cols=200  Identities=21%  Similarity=0.306  Sum_probs=143.4

Q ss_pred             eeeecCCcEEEEEEecC-CCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCe--EEEEEEeCCCC
Q psy14540         12 QTLQPGPPVSLKCIATG-NPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG--IYQCTATNRVG   86 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G--~y~C~~~~~~~   86 (291)
                      ..+.+|+.++|.|.+.+ .|.+  .+.|++++..+....       ...+.......+.+++..|+|  .|+|.+.+..+
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~-------~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~   85 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-------TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ   85 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEE-------EECSSEEEEEEEEEECGGGCEEEEEEEEEEETTE
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceE-------eeCCCeEEEEeecccccccCCcceEEEEEecCCC
Confidence            47899999999999998 7766  899999998876411       111222111222244778888  49999999888


Q ss_pred             ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEE
Q psy14540         87 SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSL  166 (291)
Q Consensus        87 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l  166 (291)
                      .....+.|.|...+. |  ...    .....+.+|+.+.|.|.+ .  |.+.+.|  +|..+....         .    
T Consensus        86 ~~~~~~~l~V~~~p~-p--~~~----~~~~~v~~G~~v~l~C~~-~--p~~~i~W--~g~~~~~~~---------~----  140 (265)
T 2oz4_A           86 SQETLQTVTIYSFPA-P--NVI----LTKPEVSEGTEVTVKCEA-H--PRAKVTL--NGVPAQPLG---------P----  140 (265)
T ss_dssp             EEEEEEEEEEECCCC-C--EEE----ESCSEEETTCEEEEEEEC-C--TTSEEEE--SSCSSSCCS---------S----
T ss_pred             CcEEEEEEEEeCCCC-c--eee----cCCceecCCCcEEEEEEc-c--CCCEEEE--CCEEccCCC---------C----
Confidence            888888899887553 1  111    123457789999999998 3  8899999  776652110         0    


Q ss_pred             EEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCC---ceeEEEEecCCC
Q psy14540        167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDN---HSSNLRVNVPPH  242 (291)
Q Consensus       167 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~---~~~~l~v~~~p~  242 (291)
                                                         ...|.|..+..+|+|.|+|.|.|.. |...   ..+.|.|..+|.
T Consensus       141 -----------------------------------~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~  185 (265)
T 2oz4_A          141 -----------------------------------RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR  185 (265)
T ss_dssp             -----------------------------------EECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEE
T ss_pred             -----------------------------------cEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCc
Confidence                                               1245566777778888888887544 4433   667788888777


Q ss_pred             CCCCCc--c-cccCCceEEEEEEeecCCCCceEEEEECCE
Q psy14540        243 IGPFTF--G-ELMEGVRTQVACVVQSGDLPLSLQWYKNGL  279 (291)
Q Consensus       243 ~~~~~~--~-~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~  279 (291)
                      +.....  . .+.+|+.++|.|.+ .|.|.|.+.|+|+|.
T Consensus       186 ~~~~~~p~~~~v~~g~~~~l~C~~-~g~P~p~i~W~~~~~  224 (265)
T 2oz4_A          186 LDERDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGT  224 (265)
T ss_dssp             CCGGGSCSEEEEETTCEECCCCCC-EEESCCEEEEEETTT
T ss_pred             cccccCCCccEEcCCCeEEEEeEC-ccCCCCeEEEEECCc
Confidence            655432  2 38899999999999 899999999999987

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.96  E-value=3.7e-28  Score=189.91  Aligned_cols=243  Identities=18%  Similarity=0.264  Sum_probs=146.5

Q ss_pred             CCcceeecceeeeecC--CcEEEEEEecCC-C-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCe
Q psy14540          2 HPQLIYKFIQQTLQPG--PPVSLKCIATGN-P-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSG   75 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g--~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G   75 (291)
                      ||.+.+.+.......|  +.+.|.|.+.+. | .+.|.|+++|..+........... ..+  ...+.|.|.+....|+|
T Consensus         7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~-~~g~~~~~s~l~i~~~~~~d~g   85 (323)
T 2wqr_A            7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQ-EGELASTQSELTLSQKHWLSDR   85 (323)
T ss_dssp             CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEE-ETTEEEEEEEEEEEHHHHHTTC
T ss_pred             CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCc-cCCcEEEEEEEEEcHHHcCCCC
Confidence            6777665544434444  699999999873 4 478999999998873321111111 111  12356888888888999


Q ss_pred             EEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc---eeEEeECC-EeccCC
Q psy14540         76 IYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL---TISWLKNG-LPILSD  151 (291)
Q Consensus        76 ~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~~-~~~~~~  151 (291)
                      .|+|.+.+..+.....+.+.+...   ..........+....+.+|+.++|.|.+....|.+   .+.|++++ ..+...
T Consensus        86 ~Y~C~a~n~~~~~~~~~~~~~~~~---~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~  162 (323)
T 2wqr_A           86 TYTCQVTYQGHTFEDSTKKCADSN---PRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS  162 (323)
T ss_dssp             CEEEEEEETTEEEEEEECCCCCSS---GGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCC
T ss_pred             cEEEEEEeCCCCcceeeecCCCCC---CCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccc
Confidence            999999986654333322111111   11111222334445577899999999985445655   99999975 333211


Q ss_pred             CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCc
Q psy14540        152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  231 (291)
Q Consensus       152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  231 (291)
                      .....                ....|.|.                    ..+.|.|.++..+|+|.|+|.|.|.......
T Consensus       163 ~~~~~----------------~~~~g~~~--------------------~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~  206 (323)
T 2wqr_A          163 TRKEE----------------KQRNGTLT--------------------VTSTLPVGTRDWIEGETYQCRVTHPHLPRAL  206 (323)
T ss_dssp             CCEEE----------------ECTTSCEE--------------------EEEEEECCHHHHHTTCCEEEEEECTTSSSCE
T ss_pred             cCCCc----------------cCCCCCEE--------------------EEEEEEECHHHccCCCCEEEEEECCCCCCCe
Confidence            11100                01112222                    1346888888889999999999887643322


Q ss_pred             eeEEEE----ecCCCCCCCCcc-cccCCceEEEEEEeecCCCC-ceEEEEECCEEccCC
Q psy14540        232 SSNLRV----NVPPHIGPFTFG-ELMEGVRTQVACVVQSGDLP-LSLQWYKNGLAISQP  284 (291)
Q Consensus       232 ~~~l~v----~~~p~~~~~~~~-~~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~~~  284 (291)
                      ...+.+    ..+|.+...+.. ....|+.++|.|.+.+.+|+ +.|.|+|||..|...
T Consensus       207 ~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~  265 (323)
T 2wqr_A          207 MRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDA  265 (323)
T ss_dssp             EEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGG
T ss_pred             eeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCC
Confidence            333321    234544433222 22349999999999433554 489999999998654

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.95  E-value=4.4e-27  Score=170.73  Aligned_cols=178  Identities=21%  Similarity=0.370  Sum_probs=128.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...+..     ......++|.|.+++.+|+|.|+|.
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKM-----SSDGRTHTLTVMTEEQEDEGVYTCI   81 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEE-----EESSSEEEEEEECCSGGGCEEEEEE
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEE-----EeCCCEEEEEEecCCccCCEEEEEE
Confidence            6888899999999999999999999888888999999998876 333222     2233456799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      +.+..+.......+.|...+....    .........+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.......
T Consensus        82 ~~n~~~~~~~~~~l~v~~~p~~~~----~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~~~~~  156 (197)
T 3lcy_A           82 ATNEVGEVETSSKLLLQATPQFHP----GYPLKEKYYGAVGSTLRLHVMY-IGRPVPAMTWFHGQKLLQNSENITIENTE  156 (197)
T ss_dssp             EECSSCEEEEEEEEEEEEEEEECT----TSCCCSEEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEECS
T ss_pred             EECCCCceeEEEEEEEEcCCCCCC----CccCCcceeecCCCeEEEEEEE-eeeeCCeeEEeECCEECCCCCceEEEEcC
Confidence            998888877888888876542210    0112244567899999999999 68899999999999998766655544322


Q ss_pred             CceEEEEEeeCCC-CCceeEEEEEEecCCCC
Q psy14540        161 EYTSSLSIATLST-GHSGNYTCVASNTVASD  190 (291)
Q Consensus       161 ~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~  190 (291)
                      . ...|.|..+.. +|.|.|+|.|.|..|..
T Consensus       157 ~-~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~  186 (197)
T 3lcy_A          157 H-YTHLVMKNVQRKTHAGKYKVQLSNVFGTV  186 (197)
T ss_dssp             S-EEEEEESSCCHHHHCEEEEEEEECSSCEE
T ss_pred             C-EEEEEEccccchhhCceEEEEEEcCcCce
Confidence            1 24455555442 44455555444444433

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.95  E-value=2.6e-26  Score=166.39  Aligned_cols=172  Identities=20%  Similarity=0.331  Sum_probs=120.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeecc---c--eEEEEEEeecCCCCCe
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHG---D--VISHVNISSVRVEDSG   75 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~--~~~~l~i~~~~~~d~G   75 (291)
                      +|.|+..|....+.+|+++.|.|.+. +.|.+.+.|++++..+...............   .  ....|.|.+++..|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            78999999999999999999999999 8888899999999988743211101111111   0  1468999999999999


Q ss_pred             EEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCc
Q psy14540         76 IYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAE  153 (291)
Q Consensus        76 ~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~  153 (291)
                      .|+|.+.+..+.. ...+.|.|...|       .....+....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+.....
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p-------~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~~  153 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGLP-------YFLEEPEDRTVAANTPFNLSCQA-QGPPEPVDLLWLQDAVPLATAPG  153 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCSC-------EEEECCCCEEECTTCCEEEEEEE-ECSSCCCEEEEEESSCBSSSSTT
T ss_pred             EEEEEEEeCCCceecccEEEEEecCC-------eEEcCCCcEEEcCCCEEEEEeEC-CCCCCCCEEEEEECCEeccCCCC
Confidence            9999999866543 334677776554       11233445778899999999999 688988 9999999988765433


Q ss_pred             eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        154 ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       154 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      .      .....|.|..+.  |+|.|+|.|.|..|.
T Consensus       154 ~------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~  181 (195)
T 2c5d_C          154 H------GPQRSLHVPGLN--KTSSFSCEAHNAKGV  181 (195)
T ss_dssp             S------SCCEEEEECCCS--SCEEEEEEEEETTEE
T ss_pred             c------CCCCeEEEcccc--cCceEEEEEEcCCCc
Confidence            2      123345555443  445555555554443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.95  E-value=2e-27  Score=187.27  Aligned_cols=255  Identities=20%  Similarity=0.322  Sum_probs=134.3

Q ss_pred             eecceeeeecCCcEEEEEEecCC--CCCeeEEEEC--CeecC------------------CCeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLA------------------GDRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~l   64 (291)
                      ..|....+.+|++++|.|.+.+.  +.+.+.|+|+  +..+.                  ..++...   ........+|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~L   81 (344)
T 1za6_B            5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLT---ADTSASTAYV   81 (344)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEE---EETTTTEEEE
T ss_pred             eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEE---EecCCCEEEE
Confidence            45667789999999999999875  3678999996  33221                  0111110   0112345789


Q ss_pred             EEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeE
Q psy14540         65 NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLK  143 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~  143 (291)
                      .|.+++.+|+|.|+|.+.+..+.......|.|...+..++  ..... .....+.+|+.++|.|.+.+..|. +.+.|++
T Consensus        82 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P--~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k  158 (344)
T 1za6_B           82 ELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGP--SVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSWNS  158 (344)
T ss_dssp             EECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCC--EEEEE-CCSCTTTSSSEEEEEEEEEEEBSSCCCEEETT
T ss_pred             EECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCC--eEEEc-cccccccCCCcEEEEEEEeeEECCCeEEEEec
Confidence            9999999999999999988554455566778774321111  11111 112345789999999999544465 7999999


Q ss_pred             CCEeccCCCc-eEEeccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEE
Q psy14540        144 NGLPILSDAE-ITIRSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC  220 (291)
Q Consensus       144 ~~~~~~~~~~-~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C  220 (291)
                      ++..+..... ......+..  ...|.|..+..+| |.|+|.|.|..+.......+.+...   +.          .+.|
T Consensus       159 ~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~---~~----------~~~~  224 (344)
T 1za6_B          159 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSC---DK----------THTC  224 (344)
T ss_dssp             TTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC-------------------
T ss_pred             CCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeeccccc---cc----------cccc
Confidence            9876421100 000111110  1234444444444 5555555544432111111000000   00          0111


Q ss_pred             EeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC-CceEEEEECCEEccC
Q psy14540        221 VASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL-PLSLQWYKNGLAISQ  283 (291)
Q Consensus       221 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p-~~~v~W~~~~~~l~~  283 (291)
                      .........  .....+..+|.+....... ...|+.++|.|.+.+.+| .+.|.|+|||..+..
T Consensus       225 ~~~~~~~~l--~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~  287 (344)
T 1za6_B          225 PPCGGGSSG--GGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN  287 (344)
T ss_dssp             ----------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCS
T ss_pred             CCCCCCccc--cccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCC
Confidence            110000000  0000112345444332222 334667999999933345 369999999988753

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.95  E-value=4.5e-27  Score=170.02  Aligned_cols=182  Identities=25%  Similarity=0.458  Sum_probs=133.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+..  .++..     ....  ..|.|.+++..|+|.|+|
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~-----~~~~--~~L~i~~~~~~d~G~Y~C   79 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSI-----RENG--QLLTILSVEDSDDGIYCC   79 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEE-----EGGG--TEEEESSCCGGGCEEEEE
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEE-----cCCc--cEEEEcCCCcccCeEEEE
Confidence            68888888888999999999999998888889999999988762  22222     1111  258999999999999999


Q ss_pred             EEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540         80 TATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        80 ~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      .+.+..+. ......+.|...+.       ....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....
T Consensus        80 ~~~~~~~~~~~~~~~l~v~~~p~-------~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~  151 (192)
T 2iep_A           80 TANNGVGGAVESCGALQVKMKPK-------ITRPPINVKIIEGLKAVLPCTT-MGNPKPSVSWIKGDSALRENSRIAVLE  151 (192)
T ss_dssp             EEECSSSCCEEEEEEEEEEEEEE-------EEECCCCEEEETTSCEEECCEE-EEESCCEEEEEETTEECCCCSSEEECT
T ss_pred             EEEcCCCceeEeEEEEEEEeCCc-------cccCCcceEEeCCCcEEEEEEE-eccCCceEEEEeCCEEccCCCcEEEec
Confidence            99987766 45556677765431       1123345678899999999998 688889999999998886554433221


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEE
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRV  237 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v  237 (291)
                                                                 ...|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       152 -------------------------------------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  188 (192)
T 2iep_A          152 -------------------------------------------SGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV  188 (192)
T ss_dssp             -------------------------------------------TSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -------------------------------------------CCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEE
Confidence                                                       1246677777777788888888777655 55677777


Q ss_pred             ecCC
Q psy14540        238 NVPP  241 (291)
Q Consensus       238 ~~~p  241 (291)
                      .++|
T Consensus       189 ~~pp  192 (192)
T 2iep_A          189 EVFA  192 (192)
T ss_dssp             EC--
T ss_pred             EeCC
Confidence            7654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.95  E-value=7.1e-26  Score=163.44  Aligned_cols=129  Identities=26%  Similarity=0.373  Sum_probs=101.5

Q ss_pred             CCcceeecceeeeec-CCcEEEEEEecCCCC--CeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQP-GPPVSLKCIATGNPT--PHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~-g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      ||.|.. +....+.+ |+.+.|.|.+.+.+.  +.+.|++++..+.......         ....|.|.+++.+|+|.|+
T Consensus         3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y~   72 (190)
T 2wv3_A            3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA---------SNMEYRINKPRAEDSGEYH   72 (190)
T ss_dssp             CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC---------SEEEEEESSCCGGGCEEEE
T ss_pred             CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe---------ccEEEEEecCCcccCEEEE
Confidence            678776 44456666 999999999988765  7899999999887433221         2367999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE--CCEecc
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK--NGLPIL  149 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~~~~~~  149 (291)
                      |.+.+. +.....+.|.|...|.       ....+....+.+|+.+.|.|.+ .+.|.+.+.|++  ++..+.
T Consensus        73 C~~~n~-~~~~~~~~l~V~~~p~-------~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~g~~~~  136 (190)
T 2wv3_A           73 CVYHFV-SAPKANATIEVKAAPD-------ITGHKRSENKNEGQDAMMYCKS-VGYPHPEWMWRKKENGVFEE  136 (190)
T ss_dssp             EEEEET-TEEEEEEEEEEECCCE-------EEEECSEEEEETTSCEEEEEEE-ECSSCCEEEEEEEETTEEEE
T ss_pred             EEEEeC-CcccccEEEEEecCCc-------ccccCCcceeeCCCcEEEEEEe-CccCCCceEEEEcCCCceee
Confidence            999988 7788888888887552       1122345678899999999999 689999999999  676653

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.95  E-value=1.8e-26  Score=177.68  Aligned_cols=216  Identities=13%  Similarity=0.187  Sum_probs=138.5

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      |.|........+.+|++++|.|.+.+.    +.|++++..+.. ...    ....+.....|.|.+++.+|+|.|+|.+.
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~-~~~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   71 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ-EMA----KAQDGTFSSVLTLTNLTGLDTGEYFCTHN   71 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE-EEE----ECTTSCEEEEEEECSCCGGGCEEEEEECC
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc-cee----ccCCCceeEEEEEccCChhhCEEEEEEEc
Confidence            667777777889999999999999864    999999987641 111    11122234789999999999999999999


Q ss_pred             CCCCc-eeeeeeEEEEcC-CCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540         83 NRVGS-QTHSADMRVYDA-PGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        83 ~~~~~-~~~~~~l~v~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      +..|. ......+.|... +..+  ............+.+|+.+.|.|.+.  .|.+.+.|++++.........  .  .
T Consensus        72 n~~g~~~~~~~~~~v~v~~p~~~--~~~~~~~~~~~~v~~G~~v~l~C~~~--~p~~~v~w~~~~~~~~~~~~~--~--~  143 (289)
T 3mjg_X           72 DSRGLETDERKRLYIFVPDPTVG--FLPNDAEELFIFLTEITEITIPCRVT--DPQLVVTLHEKKGDVALPVPY--D--H  143 (289)
T ss_dssp             C------CCCEEEEEECCCTTCC--BCCCCHHHHEEEESSCCCEEECCCBS--CTTSCEEEEESSCCSCCCCCE--E--T
T ss_pred             ccCCCCcCcEEeEEEEEECCCcC--cccCCCCcceEEeecCCeEEEEeEcC--CCCceEEEEeCCCCCccceee--c--C
Confidence            87765 223334444433 2111  10000001115688999999999994  677889998865222111000  0  0


Q ss_pred             CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEEec
Q psy14540        161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVNV  239 (291)
Q Consensus       161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v~~  239 (291)
                                    .                          .. +    +...|+|.|+|.|.|.. ...+..+.|.|..
T Consensus       144 --------------~--------------------------~~-~----~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~  178 (289)
T 3mjg_X          144 --------------Q--------------------------RG-F----SGIFEDRSYICKTTIGDREVDSDAYYVYRLQ  178 (289)
T ss_dssp             --------------T--------------------------TE-E----EECCCSSEEEEEEEETTEEEECCCEEEEECC
T ss_pred             --------------C--------------------------cC-e----eeeccCcEEEEEEEeCCceeeeeeEEEEecC
Confidence                          0                          00 0    02457888888888665 3344555677665


Q ss_pred             --CCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEc
Q psy14540        240 --PPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAI  281 (291)
Q Consensus       240 --~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l  281 (291)
                        +|.+...+... +.+|+.++|.|.+ .+.|.+.|.|+++++..
T Consensus       179 ~~~p~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~v~W~~~~~~~  222 (289)
T 3mjg_X          179 VSSINVSVNAVQTVVRQGENITLMCIV-IGNEVVNFEWTYPRKES  222 (289)
T ss_dssp             CCCCCCEEEESCSEEETTSCEEEEEEE-ESCSSBEEEEECTTSSS
T ss_pred             CCCCCcEEeCCcceeEcCCCEEEEEEE-CCCCCcceEEEcCCccC
Confidence              56655554434 8999999999999 88999999999877654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.95  E-value=1.9e-25  Score=160.09  Aligned_cols=168  Identities=23%  Similarity=0.340  Sum_probs=118.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+.......  .........+.|.|.+++..|+|.|+|.+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   79 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLY--IPVSEQHWIGFLSLKSVERSDAGRYWCQV   79 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEE--EEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceE--EEecCCCceEEEEEeecCcccCeEEEEEE
Confidence            6889999999999999999999999988888999999999887432111  11112233578999999999999999999


Q ss_pred             eCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEecc
Q psy14540         82 TNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        82 ~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      .+..+. ....+.|.|..+|.       ....+....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+.....      
T Consensus        80 ~~~~~~~~~~~~~l~V~~~p~-------~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~~------  145 (182)
T 1rhf_A           80 EDGGETEISQPVWLTVEGVPF-------FTVEPKDLAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGPAP------  145 (182)
T ss_dssp             SSCTTCEECCCEEEEEECSCE-------EEECCCCEEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCSEE------
T ss_pred             EcCCCcEEEEEEEEEEecCCe-------EEecCcceEecCCCEEEEEeEe-cCCCCCCEEEEEcCCeECCCCCC------
Confidence            987654 45677888876541       2223445778899999999999 688888 9999999988754321      


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                        ....|.|..+  +|.|.|+|.|.|..|.
T Consensus       146 --~~~~L~i~~~--~d~G~Y~C~a~N~~g~  171 (182)
T 1rhf_A          146 --SPSVLNVTGV--TQSTMFSCEAHNLKGL  171 (182)
T ss_dssp             --SSEEEEECCC--SSCEEEEEEEEETTEE
T ss_pred             --CceEEEEecc--ccCeEEEEEEECCCCC
Confidence              1334555544  3555555555555543

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.95  E-value=2.1e-27  Score=206.30  Aligned_cols=257  Identities=20%  Similarity=0.299  Sum_probs=111.1

Q ss_pred             cceeeeecC--CcEEEEEEecCCCCCeeEEEEC--CeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          9 FIQQTLQPG--PPVSLKCIATGNPTPHISWKLD--GYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         9 ~~~~~v~~g--~~v~l~C~~~~~~~~~v~W~~~--~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      +....+.+|  +.++|.|.+.+ |.+.+.|+++  +..+. ......    ...   ...|.|.+++.+|+|.|+|.+.+
T Consensus       133 ~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~----~~~---~~~l~i~~~~~~d~G~Y~C~~~~  204 (772)
T 3v2a_R          133 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRIS----WDS---KKGFTIPSYMISYAGMVFCEAKI  204 (772)
T ss_dssp             EEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCE----EET---TTEEEEEGGGTTTCSEEEEEEEE
T ss_pred             ceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceee----cCC---CCCeEecCCChhhCeEEEEEEEE
Confidence            455678889  88999999975 6789999997  55443 221110    011   13488999999999999999986


Q ss_pred             CCCceee-eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEe----
Q psy14540         84 RVGSQTH-SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIR----  157 (291)
Q Consensus        84 ~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~----  157 (291)
                      ....... ...+.+...+    .............+.+|+.++|.|.+... .+.+.+.|++++..+.........    
T Consensus       205 ~~~~~~s~~~~~~v~~~~----~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  280 (772)
T 3v2a_R          205 NDESYQSIMYIVVVVGYR----IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ  280 (772)
T ss_dssp             TTEEEECCEEEEEEECCC----EEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC---
T ss_pred             CCceEEEEEEEEEEecCc----cceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeecccccc
Confidence            4332221 1233333221    11122233344678899999999999532 556789999998876543322211    


Q ss_pred             ---ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec----------------------------------
Q psy14540        158 ---SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE----------------------------------  200 (291)
Q Consensus       158 ---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~----------------------------------  200 (291)
                         ........|.|..+..+|+|.|+|.+.|..+.......+.+..                                  
T Consensus       281 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~  360 (772)
T 3v2a_R          281 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP  360 (772)
T ss_dssp             --CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-------------------------------
T ss_pred             ccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCC
Confidence               1112356899999999999999999998776544333333110                                  


Q ss_pred             ------------------cceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEEEEecCCCCCCCCc----ccccCCce
Q psy14540        201 ------------------YTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNLRVNVPPHIGPFTF----GELMEGVR  256 (291)
Q Consensus       201 ------------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~----~~~~~g~~  256 (291)
                                        ....|.|.++..+|+|.|+|.|.|..+..  +..+.|.|..+|.+.....    ..+.+|+.
T Consensus       361 ~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~  440 (772)
T 3v2a_R          361 EIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTT  440 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEEEECCEeCCCCceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCc
Confidence                              02788899999999999999999988654  5567778888887754321    23789999


Q ss_pred             EEEEEEeecCCCCce-EEEEECC
Q psy14540        257 TQVACVVQSGDLPLS-LQWYKNG  278 (291)
Q Consensus       257 v~l~C~~~~~~p~~~-v~W~~~~  278 (291)
                      ++|.|.+ .+.|.|. +.|++++
T Consensus       441 ~~l~C~~-~g~p~p~~v~W~~~~  462 (772)
T 3v2a_R          441 QTLTCTV-YAIPPPHHIHWYWQL  462 (772)
T ss_dssp             -----------------------
T ss_pred             EEEEeEe-ccCCCCcEEEEEEcC
Confidence            9999999 8888886 9999974

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.95  E-value=7.8e-27  Score=172.08  Aligned_cols=185  Identities=25%  Similarity=0.476  Sum_probs=125.3

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .||.|+..|....+.+|+++.|.|.+.+.|.+.+.|++++..+..............+.....|.|.+++..|+|.|+|.
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~   87 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV   87 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence            47999999999999999999999999988888999999999887331111111222334445567899999999999999


Q ss_pred             EeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540         81 ATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        81 ~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      +.+..+.. .....+.|...+..      ....+....+.+|+.+.|.|.+..+.|.+.+.|++++..+...........
T Consensus        88 ~~n~~g~~~~~~~~l~v~~~~~~------~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~  161 (217)
T 2vr9_A           88 AKNRVGQAVSRHASLQIAVLRDD------FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS  161 (217)
T ss_dssp             EEETTEEEECCCEEEEECEECCS------CSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CC
T ss_pred             EecCCCccccccceEEEEEeCCC------cEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccC
Confidence            99876654 33556666543211      112234567889999999999856889999999999998874322211111


Q ss_pred             CC----ceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        160 GE----YTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       160 ~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ..    ....|.|..+..+|.|.|+|.|.|..|...
T Consensus       162 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~  197 (217)
T 2vr9_A          162 SRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE  197 (217)
T ss_dssp             CSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred             CcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceec
Confidence            00    112466666666666666666666555433

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.94  E-value=3.9e-27  Score=173.08  Aligned_cols=197  Identities=26%  Similarity=0.440  Sum_probs=134.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeE--eceEEeeccc-eEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFV--MGQYMSLHGD-VISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~   78 (291)
                      ||.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+......  ........+. ....|.|.+++..|+|.|+
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   88 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV   88 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEE
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEE
Confidence            788999999999999999999999988888899999999887622110  0011111111 1233556788999999999


Q ss_pred             EEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe
Q psy14540         79 CTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR  157 (291)
Q Consensus        79 C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  157 (291)
                      |.+.+..+.. ...+.+.|...+..      ....+....+.+|+.+.|.|.+..+.|.+.+.|++++..+.........
T Consensus        89 C~~~n~~g~~~~~~~~l~V~~~~~~------~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~  162 (212)
T 2v9r_A           89 CVARNYLGEAVSHDASLEVAILRDD------FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI  162 (212)
T ss_dssp             EEEEETTEEEECCCEEEEECEECSS------CSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEE
T ss_pred             EEEECCCCceeecceEEEEEecccc------ceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEc
Confidence            9999876654 44566666553311      1123345678899999999997568899999999999887543221100


Q ss_pred             ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEE
Q psy14540        158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLR  236 (291)
Q Consensus       158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~  236 (291)
                                                                 ....|.|.++..+|+|.|+|.|.|..|.. +..+.|.
T Consensus       163 -------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~  199 (212)
T 2v9r_A          163 -------------------------------------------RGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELT  199 (212)
T ss_dssp             -------------------------------------------ETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             -------------------------------------------cCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEE
Confidence                                                       02357788888888999999999988764 4458899


Q ss_pred             EecCCCCCCCC
Q psy14540        237 VNVPPHIGPFT  247 (291)
Q Consensus       237 v~~~p~~~~~~  247 (291)
                      |..+|.+...+
T Consensus       200 V~~~P~~~~~P  210 (212)
T 2v9r_A          200 VLERPSFVKAA  210 (212)
T ss_dssp             EEC--------
T ss_pred             EEeCchHhhhc
Confidence            99888876544

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.94  E-value=3.1e-25  Score=170.26  Aligned_cols=174  Identities=26%  Similarity=0.512  Sum_probs=124.1

Q ss_pred             CCcceeec-ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKF-IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~-~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ....     ........|.|.+++..|+|.|+|
T Consensus        98 ~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C  172 (284)
T 2rik_A           98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM-----SFVESVAVLEMYNLSVEDSGDYTC  172 (284)
T ss_dssp             CCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEE-----EEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEE-----EEcCCEEEEEECCCCcccCEEEEE
Confidence            45555443 3456899999999999998899999999999988732 2222     112234679999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540         80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      .+.+..+.....+.|.|..+|...       ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+......
T Consensus       173 ~a~n~~g~~~~~~~l~V~~~p~~~-------~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~  244 (284)
T 2rik_A          173 EAHNAAGSASSSTSLKVKEPPVFR-------KKPHPVETLKGADVHLECEL-QGTPPFQVSWHKDKRELRSGKKYKIMSE  244 (284)
T ss_dssp             EEECSSCEEEEEEEEEEECCCBCC-------SCCCCEEECTTCCEEEEEEC-BSSSCCEEEEEETTEEECBTTTEEEEEE
T ss_pred             EEEcCCCceeEEEEEEEecCCcce-------eCCCcceecCCCeEEEEEEE-EecCCCEEEEEECCEECcCCCCEEEEEc
Confidence            999998888888889998765321       23345678899999999999 6889999999999998876655544322


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      + ....|.|..+..+|.|.|+|.|.|..|.
T Consensus       245 ~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  273 (284)
T 2rik_A          245 N-FLTSIHILNVDSADIGEYQCKASNDVGS  273 (284)
T ss_dssp             T-TEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             C-CEEEEEEcCCCcccCEEEEEEEEeCCCc
Confidence            1 1234444444444444444444444443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.94  E-value=4.3e-26  Score=166.03  Aligned_cols=168  Identities=16%  Similarity=0.208  Sum_probs=126.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCe-eEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...|....+.+|++++|.|.+.+.+.+. +.|++++..+....              ..|.|.+++.+|+|.|+|.
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~--------------~~L~i~~v~~~D~G~Y~C~   72 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------SSYFIDAATVDDSGEYRCQ   72 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS--------------SEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc--------------cEEEEecccccCCEEEEEE
Confidence            57888888888999999999999999876655 99999998776332              4588999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      +.+  +..+..+.|.|...+.       ....+ ...+.+|+.++|.|.+..+.|.+.+.|+++|..+....        
T Consensus        73 a~n--~~~s~~~~l~V~~~p~-------~~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~--------  134 (204)
T 3sgj_C           73 TQL--STLSDPVQLEVHIGWL-------LLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH--------  134 (204)
T ss_dssp             ETT--SBCCCCEEEEEECSSE-------EEECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE--------
T ss_pred             eCC--CcccccEEEEEecCce-------EecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc--------
Confidence            986  3455566777775431       11222 25677999999999996566778999999997742100        


Q ss_pred             CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC-CccCCceeEEEEec
Q psy14540        161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT-VASDNHSSNLRVNV  239 (291)
Q Consensus       161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~-~~~~~~~~~l~v~~  239 (291)
                                                              ....|.|.++..+|+|.|+|.|.|. .+..+..+.|.|..
T Consensus       135 ----------------------------------------~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (204)
T 3sgj_C          135 ----------------------------------------HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ  174 (204)
T ss_dssp             ----------------------------------------ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ----------------------------------------CCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeC
Confidence                                                    0235777888888888888888884 46677788888876


Q ss_pred             CC
Q psy14540        240 PP  241 (291)
Q Consensus       240 ~p  241 (291)
                      +|
T Consensus       175 ~~  176 (204)
T 3sgj_C          175 GL  176 (204)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.94  E-value=1.6e-26  Score=183.63  Aligned_cols=200  Identities=14%  Similarity=0.179  Sum_probs=148.0

Q ss_pred             eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS   91 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   91 (291)
                      ..+.+|++++|.|.+.+.|.+.+.|++++..+.              .....|.|.+++.+|+|.|+|.+.+..+.....
T Consensus       106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~--------------~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~  171 (363)
T 1wio_A          106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK  171 (363)
T ss_dssp             SSEESBSCEEEEEECCTTCCCCEEEECSSSCEE--------------EESSEEEECSBCGGGCEECEEEEEETTEEEEEC
T ss_pred             eEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc--------------ccceEEEEeeCChhcCCEEEEEEecCCCeEEEE
Confidence            468899999999999888899999999875431              012458999999999999999999876666666


Q ss_pred             eeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC-----CCCceeEEeECCEeccC--------CCceEEec
Q psy14540         92 ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG-----DPPLTISWLKNGLPILS--------DAEITIRS  158 (291)
Q Consensus        92 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~~~~~~~--------~~~~~~~~  158 (291)
                      +.+.|...+..          +....+.+|+.+.|.|.+ .+     .|.+.+.|+++|..+..        ........
T Consensus       172 ~~l~v~~~p~~----------~~~~~~~~G~~v~l~C~~-~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~  240 (363)
T 1wio_A          172 IDIVVLAFQKA----------SSIVYKKEGEQVEFSFPL-AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKR  240 (363)
T ss_dssp             CEECEECCSCS----------EEEEEEETBCCEEEECCC-CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEE
T ss_pred             EEEEEecCCCC----------CCceEEecCCEEEEEEEE-ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccc
Confidence            77777755421          134667899999999988 45     77899999999988765        33333321


Q ss_pred             ---------cCCceEEEEEeeCCCCCceeEEEEEEec--CCCCCCceEEEEec---------------------------
Q psy14540        159 ---------SGEYTSSLSIATLSTGHSGNYTCVASNT--VASDNHSSNLRVNE---------------------------  200 (291)
Q Consensus       159 ---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~~~~~~~~---------------------------  200 (291)
                               ...+...|.|.++..+|.|.|+|.|.|.  .|.....+.+.+..                           
T Consensus       241 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~g~~~~l~C~~~g~p~p~~~i~W~~~  320 (363)
T 1wio_A          241 VTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLE  320 (363)
T ss_dssp             EECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEECCCSSSEEEEEESSCCTTCCEEEECS
T ss_pred             cccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEecCCCeeEEEEEccccCCCccEEEEeC
Confidence                     1222448999999999999999999999  77655444443110                           


Q ss_pred             -----cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        201 -----YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       201 -----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                           ....|.|..+..+|+|.|+|.|.+. +....+..|.|
T Consensus       321 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          321 NKEAKVSKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             SSSCSEEESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred             CCceeeeeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence                 0455778899999999999999964 34444445544

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.94  E-value=7e-26  Score=163.59  Aligned_cols=171  Identities=20%  Similarity=0.359  Sum_probs=123.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEE-CCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKL-DGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      |+.|...|.+..+.+|+.++|.|.+.+.+ .+.+.|++ ++..+..  .++...    ........|.|.+++.+|+|.|
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y   77 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV----WNDDDSSTLTIYNANIDDAGIY   77 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEE----EEETTEEEEEECSCCGGGCEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEE----ECCCCceEEEEccCCcccCEEE
Confidence            67889999999999999999999999865 78999999 8877662  222221    1123446799999999999999


Q ss_pred             EEEEeCCC-CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ce
Q psy14540         78 QCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EI  154 (291)
Q Consensus        78 ~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~  154 (291)
                      +|.+.+.. +.....+.+.|..++.       ....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....  +.
T Consensus        78 ~C~~~~~~~~~~~~~~~l~v~~~p~-------~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~  149 (191)
T 1epf_A           78 KCVVTAEDGTQSEATVNVKIFQKLM-------FKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRF  149 (191)
T ss_dssp             EEEEEETTTEEEEEEEEEEEECCSE-------EEECCSSEECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTE
T ss_pred             EEEEEcCCCcceEEEEEEEeecCce-------EecCCCcEeecCCCeEEEEEEE-CCCCCCEEEEEECCEEeeccCCceE
Confidence            99999876 4556667777765441       2233445678899999999999 589999999999999886432  22


Q ss_pred             EEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       155 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      .....    ..|.|..+..+|.|.|+|.|.|..+
T Consensus       150 ~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~~  179 (191)
T 1epf_A          150 IVLSN----NYLQIRGIKKTDEGTYRCEGRILAR  179 (191)
T ss_dssp             EECTT----SCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred             EEecC----CeEEECCCChhhCEEEEEEEEEecc
Confidence            22211    2466666666666666666666553

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.94  E-value=1.2e-25  Score=163.78  Aligned_cols=178  Identities=16%  Similarity=0.191  Sum_probs=117.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +|.|.. +....+.+|+.+.|.|.+.. .|.+.+.|++||..+. ..++.+.   .....+..+|.|.+++.+|+|.|+|
T Consensus         3 ~p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~---~~~~~g~~~L~I~~v~~~D~G~Y~C   78 (207)
T 3rbs_A            3 DPFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMH---IDRNTGIIEMFMEKLQDEDEGTYTF   78 (207)
T ss_dssp             ---CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEE---ECTTTCEEEEEESCCCGGGCEEEEE
T ss_pred             CCeeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEE---EeCCCCEEEEEECCCChhhCEEEEE
Confidence            466665 44678999999999999975 7899999999999987 3333321   1222456789999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEcCC------------------CCCcccceeccCCcceeecCCCceEEEEEeeCCC-CCceeE
Q psy14540         80 TATNRVGSQTHSADMRVYDAP------------------GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD-PPLTIS  140 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~------------------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-p~~~~~  140 (291)
                      .+.|  +.......+.+....                  ..|    ...... ...+.+|+.+.|.|.+ .|. |.+.+.
T Consensus        79 ~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P----~~~~~~-~~~v~~g~~v~l~C~v-~g~~P~p~i~  150 (207)
T 3rbs_A           79 QLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP----HFVEYL-SWEVTGECNVLLKCKV-ANIKKETHIV  150 (207)
T ss_dssp             EEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSS----EEEEEE-EEEEETTTEEEEEEEE-ESCCTTCEEE
T ss_pred             EEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCC----ceEecC-CcEEcCCCcEEEEEEE-eCCCCCCEEE
Confidence            9987  444433333221100                  011    111111 2567899999999999 576 899999


Q ss_pred             EeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        141 WLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       141 W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      |++++.++....+..   ...+...|.|.++..+|.|.|+|.|.|..|......
T Consensus       151 W~k~g~~l~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~  201 (207)
T 3rbs_A          151 WYKDEREISVDEKHD---FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL  201 (207)
T ss_dssp             EEETTEEECCCCCCC---CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEECCEECCCCCceE---cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEE
Confidence            999999986654321   122234566666666666666666666665444333

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.94  E-value=3.8e-26  Score=164.70  Aligned_cols=182  Identities=23%  Similarity=0.448  Sum_probs=124.4

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      |+|.|...|.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+..   .++..     . ..  .+|.|.+++.+|+|.|
T Consensus         1 s~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-----~-~~--~~L~i~~~~~~d~G~Y   72 (189)
T 2v5t_A            1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM-----L-AN--NNLQILNINKSDEGIY   72 (189)
T ss_dssp             CCCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEE-----C-TT--SCEEETTCCGGGCEEE
T ss_pred             CCceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEE-----e-cC--CCEEEeeCCHhHCcEE
Confidence            689999999999999999999999999888889999999877651   22221     1 11  2489999999999999


Q ss_pred             EEEEeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceE
Q psy14540         78 QCTATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEIT  155 (291)
Q Consensus        78 ~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~  155 (291)
                      +|.+.+..+..  ...+.+.+..++.     ...........+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+..
T Consensus        73 ~C~~~~~~~~~~~~~~~~l~v~~~p~-----~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~  146 (189)
T 2v5t_A           73 RCEGRVEARGEIDFRDIIVIVNVPPA-----ISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENEKYI  146 (189)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEEEEEE-----EECSCCEEEEETTSCCCEEEECEE-EEESCCEEEEEETTEECCCSSSEE
T ss_pred             EEEEEEcCCCceEEEEEEEEecCCCC-----cccccccccccccCCCcEEEEEEE-ccCCCCeEEEEECCEECcCCCcEE
Confidence            99998766443  2344555554331     111111224567789999999999 678999999999999886654433


Q ss_pred             EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEE
Q psy14540        156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  235 (291)
Q Consensus       156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l  235 (291)
                      ....                                          ...|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus       147 ~~~~------------------------------------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  184 (189)
T 2v5t_A          147 LKGS------------------------------------------NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL  184 (189)
T ss_dssp             EETT------------------------------------------TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EecC------------------------------------------CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEE
Confidence            2211                                          2346666666666777777777766666666666


Q ss_pred             EEe
Q psy14540        236 RVN  238 (291)
Q Consensus       236 ~v~  238 (291)
                      .|.
T Consensus       185 ~V~  187 (189)
T 2v5t_A          185 QVF  187 (189)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.94  E-value=2.6e-25  Score=163.92  Aligned_cols=178  Identities=22%  Similarity=0.393  Sum_probs=130.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      .+.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+....             ...|.|.+++..|+|.|+|.+
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~   84 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------------TSELIFNAVHVKDAGFYVCRV   84 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC-------------SSEEEETTCCGGGCEEEEEEE
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC-------------CCEEEEccCChhhCeEeEEEE
Confidence            4688899999999999999999999988889999999998876321             135899999999999999999


Q ss_pred             eCCCCce-eeeeeEEEEcCCCC--------CcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC
Q psy14540         82 TNRVGSQ-THSADMRVYDAPGQ--------PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA  152 (291)
Q Consensus        82 ~~~~~~~-~~~~~l~v~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~  152 (291)
                      .+..+.. +..+.+.|...+..        +.........+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....
T Consensus        85 ~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~~~~~~~~~  163 (218)
T 3k0w_A           85 NNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHET  163 (218)
T ss_dssp             ECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEE-EBSSCCEEEEEETTEECTTCC
T ss_pred             EcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEe-cccCCCeEEEEECCEECCCCC
Confidence            9876643 55677788765311        0001122234455778899999999999 688999999999998875431


Q ss_pred             ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCc
Q psy14540        153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNH  231 (291)
Q Consensus       153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~  231 (291)
                                                                       ...|.|.++..+|+|.|+|.|.|..+. .+.
T Consensus       164 -------------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~  194 (218)
T 3k0w_A          164 -------------------------------------------------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK  194 (218)
T ss_dssp             -------------------------------------------------SSEEEESSCCGGGCEEEEEEEECSSCEEECC
T ss_pred             -------------------------------------------------CCEEEEeecChhcCEEEEEEEEcCCCCceee
Confidence                                                             124666666777777777777776544 566


Q ss_pred             eeEEEEecCCC
Q psy14540        232 SSNLRVNVPPH  242 (291)
Q Consensus       232 ~~~l~v~~~p~  242 (291)
                      .+.|.|...+.
T Consensus       195 ~~~l~V~~~~~  205 (218)
T 3k0w_A          195 KVEIIIDELNN  205 (218)
T ss_dssp             CEEEEECC---
T ss_pred             eEEEEEeCCcc
Confidence            66777765433

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.94  E-value=2.2e-26  Score=184.49  Aligned_cols=226  Identities=19%  Similarity=0.317  Sum_probs=155.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCC---CCeeEEEECCeecCCCeeE-eceEEeeccceEEEEEEeecCCCCC-eE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRFV-MGQYMSLHGDVISHVNISSVRVEDS-GI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~-G~   76 (291)
                      +|.+...+....+.+|+.++|.|.+.+.+   .+.+.|++++..+...... ....... ..  ..|.|.+++.+|+ |.
T Consensus       103 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~--~~L~i~~v~~~d~~G~  179 (388)
T 2v5m_A          103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL-PS--GELHIREVGPEDGYKS  179 (388)
T ss_dssp             CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC-TT--SCEEESSCCGGGGGCC
T ss_pred             ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEc-cC--CcEEEecCCccccCee
Confidence            45566667778899999999999998743   3789999988765311100 0111111 11  2589999999999 99


Q ss_pred             EEEEEeCCCCcee-e---eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc---
Q psy14540         77 YQCTATNRVGSQT-H---SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL---  149 (291)
Q Consensus        77 y~C~~~~~~~~~~-~---~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~---  149 (291)
                      |+|.+.+..+... .   ...+.|..+.....+ ...........+.+|+.+.|.|.+ .+.|.+.+.|++++..+.   
T Consensus       180 Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p-~~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~  257 (388)
T 2v5m_A          180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAP-RTPALVQKPLELMVAHTISLLCPA-QGFPAPSFRWYKFIEGTTRKQ  257 (388)
T ss_dssp             EEEEEEETTTCCEEECSSCBCEEEECCCSCEEE-ECCSSCCCCEEEETTSCEEECCCC-EEESCCEEEEEEECTTSSCEE
T ss_pred             EEEEeccCCCCceeeccccceEEEecCCcCCCC-cCccccCCceEEeeCCcEEEEEEC-CCCCCCEEEEEecCCCCcccc
Confidence            9999987654322 1   235666554211100 011112233567889999999998 688999999999754322   


Q ss_pred             ---CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE----------------------------
Q psy14540        150 ---SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV----------------------------  198 (291)
Q Consensus       150 ---~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~----------------------------  198 (291)
                         ...+....     ...|.|..+..+|.|.|+|.+.|..|.......+.+                            
T Consensus       258 ~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~  332 (388)
T 2v5m_A          258 AVVLNDRVKQV-----SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT  332 (388)
T ss_dssp             ECCCSSSEEEE-----TTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEE
T ss_pred             cccccCceecc-----cCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEec
Confidence               12222211     347999999999999999999999887655444441                            


Q ss_pred             ----------------eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        199 ----------------NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       199 ----------------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                                      ......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       333 g~p~p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          333 GNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             cccCCeEEEEECCEECccCCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence                            112678999999999999999999999998888887765

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.94  E-value=3e-26  Score=166.10  Aligned_cols=170  Identities=17%  Similarity=0.178  Sum_probs=109.7

Q ss_pred             eeeeecCCcEEEEEEe---cCCCCCeeEEEECCeecCC--------CeeEe-----ceEEeeccceEEEEEEeecCCCCC
Q psy14540         11 QQTLQPGPPVSLKCIA---TGNPTPHISWKLDGYPLAG--------DRFVM-----GQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~---~~~~~~~v~W~~~~~~~~~--------~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      .+++..|+.++|.|.+   .+.|.+.|+|+|+|.....        .....     ...........+.|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            4678999999999964   4578899999998753321        00000     011112233457899999999999


Q ss_pred             eEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC----
Q psy14540         75 GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS----  150 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~----  150 (291)
                      |.|+|.+.+..+.....+.|.|..++       .....+....+.+|+.++|.|.+ .|.|.|.+.|++++..+..    
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~-------~~~~~~~~~~v~~g~~~~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~  153 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPL-------TLSVHSERSQFPDFSVLTVTCTV-NAFPHPHVQWLMPEGVEPAPTAA  153 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEE-------EEEEEEEECCSSCSCCEEEEEEE-EEESCCEEEECCC----------
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCc-------eeeecceeEEEcCCCEEEEEEEc-CCCCCCEEEEEECCeeecCcccc
Confidence            99999999988888888888887543       12233445677899999999999 6899999999987655432    


Q ss_pred             CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        151 DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       151 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+.....++. ...+.+..+..+|.|.|+|.|.|..|.
T Consensus       154 ~~r~~~~~~g~-l~il~i~~v~~~D~G~YtC~A~N~~G~  191 (203)
T 4fa8_A          154 NGGVMKEKDGS-LSVAVDLSLPKPWHLPVTCVGKNDKEE  191 (203)
T ss_dssp             --CCEECTTSC-EEEEEEEEECSSCCCCEEEEEESSSCE
T ss_pred             cceEEEeCCCC-EEEEEECCCCHHHCEEEEEEEEcCCCE
Confidence            22222222221 223344455556666666666665554

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.94  E-value=1.9e-25  Score=179.97  Aligned_cols=217  Identities=23%  Similarity=0.364  Sum_probs=156.5

Q ss_pred             cceeeeecCCcEEEEEEe-cCCCCCeeEEEECCeecC--CCeeEeceEEeeccceEEEEEEeecCCCC-CeEEEEEEeCC
Q psy14540          9 FIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDVISHVNISSVRVED-SGIYQCTATNR   84 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~   84 (291)
                      +....+.+|+.++|.|.+ .+.|.+.+.|++++....  ..+...     . ..  ..|.|.+++..| +|.|+|.+.+.
T Consensus       123 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~-----~-~~--~~l~i~~v~~~d~~G~Y~C~a~n~  194 (404)
T 3p3y_A          123 LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQ-----G-HN--GDLYFSNVMLQDMQTDYSCNARFH  194 (404)
T ss_dssp             CCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEE-----C-TT--SCEEESSCCSGGGSSCBEEEEECT
T ss_pred             CCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEE-----c-CC--CcEEEEeeeeccCCcceEEEEEec
Confidence            345688999999999998 668888999999875433  222211     1 11  248899999999 59999999987


Q ss_pred             CCce---eeeeeEEEEcCCCCC---cccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540         85 VGSQ---THSADMRVYDAPGQP---QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        85 ~~~~---~~~~~l~v~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      .+..   .....+.+...+...   +.............+.+|+.+.|.|.+ .+.|.+.+.|++++..+......... 
T Consensus       195 ~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~-  272 (404)
T 3p3y_A          195 FTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA-SGVPTPDIAWYKKGGDLPSDKAKFEN-  272 (404)
T ss_dssp             TTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCB-CCSSCCEEEEEETTBCCCTTTEEEEG-
T ss_pred             cccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEE-CCCCCCcEEEEECCEECCCCcccccc-
Confidence            6653   233556665433211   111111111234568899999999998 78899999999999888655432221 


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec--------------------------------------
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE--------------------------------------  200 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~--------------------------------------  200 (291)
                         ....|.|..+..+|.|.|+|.+.|..|.......+.+..                                      
T Consensus       273 ---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~  349 (404)
T 3p3y_A          273 ---FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVN  349 (404)
T ss_dssp             ---GGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEET
T ss_pred             ---cCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEEC
Confidence               134799999999999999999999888765555444110                                      


Q ss_pred             ---------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        201 ---------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       201 ---------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                                     ....|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       350 g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          350 GEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             TEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence                           14579999999999999999999999998888888775

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.94  E-value=3.4e-25  Score=165.94  Aligned_cols=207  Identities=25%  Similarity=0.339  Sum_probs=139.8

Q ss_pred             CCcceee----cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYK----FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~----~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.|+..    +....+.+|+++.|.|.+.+.|.+.+.|++++..+.......... .  .....+|.|.+++..|+|.|
T Consensus        11 ~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~--~~~~~~L~i~~v~~~d~G~Y   87 (241)
T 3grw_A           11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK-L--RHQQWSLVMESVVPSDRGNY   87 (241)
T ss_dssp             CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCE-E--EGGGTEEEECSCCGGGCEEE
T ss_pred             CceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCccccee-e--eccceEEEEEeCCcccCEEE
Confidence            5555543    346789999999999999988888999999999876221110000 0  11124599999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE----CCEeccCCCc
Q psy14540         78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK----NGLPILSDAE  153 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~~~~~~~~~~  153 (291)
                      +|.+.+..+.......+.|...+..+  .......+....+.+|+.+.|.|.+ .+.|.+.+.|++    ++..+.....
T Consensus        88 ~C~~~~~~~~~~~~~~l~V~~~~~~~--~~~~~~~~~~~~~~~g~~v~L~C~~-~~~p~p~v~W~~~~~~~g~~~~~~~~  164 (241)
T 3grw_A           88 TCVVENKFGSIRQTYTLDVLERSPHR--PILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGPDGT  164 (241)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCCCC--CEEEECTTCSEECCTTCCEEEEEEE-ECSSCCEEEEEEECCSSSCSSCTTTC
T ss_pred             EEEEeecCCceEEEEEEEEeccCCCC--ceeecCCCccceecCCCEEEEEEEE-ecCCCCEEEEEEcccCCCcccCCCCc
Confidence            99999888888888888887654222  2222234455678899999999999 688999999999    7766654332


Q ss_pred             eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCcee
Q psy14540        154 ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  233 (291)
Q Consensus       154 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  233 (291)
                      .....       ..... .  +                      .......|.|.++..+|+|.|+|.|.|..|....++
T Consensus       165 ~~~~~-------~~~~~-~--~----------------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~  212 (241)
T 3grw_A          165 PYVTV-------LKSWI-S--E----------------------SVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAF  212 (241)
T ss_dssp             CCEEE-------EEEEE-C--S----------------------BSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eeeee-------eeEee-e--e----------------------ecCCceEEEECcCCcccCcEEEEEEecCcceEEEEE
Confidence            11100       00000 0  0                      001145788899999999999999999999888899


Q ss_pred             EEEEecCCCCCCC
Q psy14540        234 NLRVNVPPHIGPF  246 (291)
Q Consensus       234 ~l~v~~~p~~~~~  246 (291)
                      .|.|..+|.....
T Consensus       213 ~l~V~~~p~~~~~  225 (241)
T 3grw_A          213 WLSVHGPRAAEEE  225 (241)
T ss_dssp             EEEC---------
T ss_pred             EEEecCCCCCCcc
Confidence            9999887765443

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.94  E-value=1.4e-25  Score=159.73  Aligned_cols=170  Identities=19%  Similarity=0.256  Sum_probs=124.7

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .+|.|...|....+.+|++++|.|.+.+.+.+ .+.|++++..+...              ...|.|.+++.+|+|.|+|
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C   68 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET--------------NSSLNIVNAKFEDSGEYKC   68 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC--------------SSEEEECSCCGGGCEEEEE
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC--------------ceEEEEeccceecCEEEEE
Confidence            37899999998899999999999999886664 69999999877632              1358899999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540         80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      .+.+..+  +..+.+.|...+      ... . .....+.+|+.+.|.|.+..+.|.+.+.|+++|..+....       
T Consensus        69 ~~~~~~~--s~~~~l~V~~~~------~~~-~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-------  131 (176)
T 1f2q_A           69 QHQQVNE--SEPVYLEVFSDW------LLL-Q-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-------  131 (176)
T ss_dssp             ECTTSSC--CCCEEEEEECSS------EEE-E-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------
T ss_pred             EcCCccc--cccEEEEEeCcc------eee-c-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-------
Confidence            9986443  445566666222      111 1 1224677999999999996577788999999998763210       


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEEe
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVN  238 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v~  238 (291)
                                                               ....|.|.++..+|+|.|+|.|.|.. +..+..+.|.|.
T Consensus       132 -----------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  170 (176)
T 1f2q_A          132 -----------------------------------------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI  170 (176)
T ss_dssp             -----------------------------------------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             -----------------------------------------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEe
Confidence                                                     02357777777788888888888754 456677788888


Q ss_pred             cCCC
Q psy14540        239 VPPH  242 (291)
Q Consensus       239 ~~p~  242 (291)
                      .+|.
T Consensus       171 ~~p~  174 (176)
T 1f2q_A          171 KAPR  174 (176)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            7764

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.94  E-value=3.1e-25  Score=165.06  Aligned_cols=202  Identities=22%  Similarity=0.340  Sum_probs=143.5

Q ss_pred             CCcceeec----ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeE
Q psy14540          2 HPQLIYKF----IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~~~~----~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   76 (291)
                      +|.|...+    ....+.+|+++.|.|.+.+.|.+.+.|++++..+... ......  .  ......|.|.+++..|+|.
T Consensus        15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~--~~~~~~L~i~~~~~~d~G~   90 (231)
T 3ojm_B           15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK--V--RNQHWSLIMESVVPSDKGN   90 (231)
T ss_dssp             EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCE--E--EGGGTEEEECSCCGGGCEE
T ss_pred             CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCcccccccccccee--e--ecCcceEEEecCCcccCEE
Confidence            56666555    6778999999999999998888899999999987622 111100  1  1122469999999999999


Q ss_pred             EEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE----CCEeccCCC
Q psy14540         77 YQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK----NGLPILSDA  152 (291)
Q Consensus        77 y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~~~~~~~~~  152 (291)
                      |+|.+.+..+.......+.|...+..+.  ......+....+.+|+.+.|.|.+ .+.|.+.+.|++    +|..+....
T Consensus        91 Y~C~~~n~~~~~~~~~~l~V~~~~~~~p--~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~g~~~~~~~  167 (231)
T 3ojm_B           91 YTCVVENEYGSINHTYHLDVVERSRHRP--ILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDG  167 (231)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECCCCCCC--EECTTCSCCEEEETTCCEEEECCE-ECSSCCEEEEEEECCBTTBSBCTTS
T ss_pred             EEEEEecccCcccccEEEEEEcCCCCCC--ceeeccCCceEEEeCCcEEEEEEE-ecCCCCEEEEEECCCCCCccccCCC
Confidence            9999998888888888888887553221  222233455778899999999999 688999999999    666654332


Q ss_pred             ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCce
Q psy14540        153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  232 (291)
Q Consensus       153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  232 (291)
                      .....       .........                          .....|.|.++..+|+|.|+|.|.|..|.....
T Consensus       168 ~~~~~-------~~~~~~~~~--------------------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  214 (231)
T 3ojm_B          168 LPYLK-------VLKHSGINS--------------------------SNAEVLALFNVTEADAGEYICKVSNYIGQANQS  214 (231)
T ss_dssp             CBCEE-------EEEECSTTC--------------------------SCTTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             cceEe-------Eeccccccc--------------------------CCccEEEEecCCHHHCeEEEEEEEeccceEeeE
Confidence            21100       000000000                          113568899999999999999999999888888


Q ss_pred             eEEEEecCCCC
Q psy14540        233 SNLRVNVPPHI  243 (291)
Q Consensus       233 ~~l~v~~~p~~  243 (291)
                      +.|.|..+|..
T Consensus       215 ~~l~V~~~p~~  225 (231)
T 3ojm_B          215 AWLTVLPKQQA  225 (231)
T ss_dssp             EEEEEECCC--
T ss_pred             EEEEEecCCCC
Confidence            99998877653

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.94  E-value=4.8e-25  Score=159.80  Aligned_cols=173  Identities=18%  Similarity=0.227  Sum_probs=114.9

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..+......     .........|.|.+++.+|+|.|+|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~   76 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQN-----PLEPKNKARFSIPSMTEDYAGRYRCY   76 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEEC-----CCSSSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccc-----cccCCceEEEEeccCCcccCceEEEE
Confidence            36888888877 8999999999999987 67799999999876532111     11122346799999999999999999


Q ss_pred             EeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540         81 ATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        81 ~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      +.+..+  ..+..+.|.|...+..|.  ..  ..+. ..+.+|+.++|.|.+. + +.+.+.|++++..+..........
T Consensus        77 a~n~~g~~~~s~~~~l~V~~~~~~p~--~~--~~~~-~~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~~~~~~~~~  149 (196)
T 3p2t_A           77 YRSPVGWSQPSDPLELVMTGAYSKPT--LS--ALPS-PLVTSGKSVTLLCQSR-S-PMDTFLLCKERAAHPLLCLRSEHG  149 (196)
T ss_dssp             EEETTEEBCCCCCEEEEEECSSCCCE--EE--EESC-SEECTTCCEEEEEEEE-E-EEEEEEEEETTCCCGGGSEEEEEE
T ss_pred             EeCCCcccCCCccEEEEecCCCCCCE--EE--eCCc-ceecCCCeEEEEEecC-C-CCCEEEEEeCCCcccceeeccccc
Confidence            998776  345566777765443221  11  1112 2578999999999984 4 456899999998765433221111


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      .......|.|.++..+|.|.|+|.+.|..
T Consensus       150 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~  178 (196)
T 3p2t_A          150 AQQHQAEFPMSPVTSVHGGTYRCFSSHGF  178 (196)
T ss_dssp             EEEEEEEEEECSCCGGGCEEEEEEEECGG
T ss_pred             ccCcceEEEeCCCcccCCCeEEEEEEcCC
Confidence            11123445555555555555555555544

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.93  E-value=4.1e-25  Score=178.18  Aligned_cols=210  Identities=14%  Similarity=0.187  Sum_probs=133.0

Q ss_pred             eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceee-
Q psy14540         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTH-   90 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~-   90 (291)
                      ..+..|+.+.|.|.+.|.|.+.|+|++++..+...............        .-+...|+|.|+|.+.|..|.... 
T Consensus       149 ~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~--------~~l~~~d~G~Y~C~A~N~~G~~~~~  220 (423)
T 3qs7_E          149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE--------KVLHELFGTDIRCCARNELGRECTR  220 (423)
T ss_dssp             EEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECC--------SEECCCCSSCEEEEEECSSCEEEEE
T ss_pred             cEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccc--------eEEecccCeEEEEEEEcCCCCccee
Confidence            34667889999999999999999999988754311100000000000        012578999999999998876543 


Q ss_pred             eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec--c---CCceEE
Q psy14540         91 SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS--S---GEYTSS  165 (291)
Q Consensus        91 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--~---~~~~~~  165 (291)
                      .+.|.|...+..         .+....+.+|+.+.|.|.+....|.+.+.|++++..+..........  .   ......
T Consensus       221 ~~~l~V~~~p~~---------~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~  291 (423)
T 3qs7_E          221 LFTIDLNQTPQT---------TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF  291 (423)
T ss_dssp             CEEEESSSCCCS---------STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEE
T ss_pred             eEEEEEecCCcc---------CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEE
Confidence            345555443322         12246788999999999995337789999999998875543221110  0   112357


Q ss_pred             EEEeeCCCCCceeEEEEEEecCCCCCCceEEEEecc---------------------------------------c----
Q psy14540        166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY---------------------------------------T----  202 (291)
Q Consensus       166 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~---------------------------------------~----  202 (291)
                      |.|..+..+|+|.|+|.|.|.   ....+.+.+...                                       .    
T Consensus       292 L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~  368 (423)
T 3qs7_E          292 AFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFP  368 (423)
T ss_dssp             EEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEE
T ss_pred             EEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECC
Confidence            999999999999999999987   222222221000                                       0    


Q ss_pred             -------eEEEE--eeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        203 -------SSLSI--ATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       203 -------~~l~i--~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                             ..+.+  ......|+|.|+|.|.|..|..+.++.|.|...|
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p  416 (423)
T 3qs7_E          369 CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT  416 (423)
T ss_dssp             CBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----
T ss_pred             CccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCC
Confidence                   12233  5566789999999999999999999999887755

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=1.7e-25  Score=164.32  Aligned_cols=195  Identities=22%  Similarity=0.400  Sum_probs=128.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-----CeeEe--ceEEeeccceEEEEEEeecCCCCC
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-----DRFVM--GQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      |+.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..     .....  ........   ..|.|.+++..|+
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~L~i~~v~~~D~   77 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS---SGITFSSVTRKDN   77 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET---TEEEESCCCGGGC
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec---eeEEEcccCcccC
Confidence            45677888889999999999999999888899999997755210     00000  00000011   5699999999999


Q ss_pred             eEEEEEEeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCE-eccCC
Q psy14540         75 GIYQCTATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL-PILSD  151 (291)
Q Consensus        75 G~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~-~~~~~  151 (291)
                      |.|+|.+.+..+  .....+.|.|..+|..+..       .....+.+|+.+.|.|.+..+.|.+.+.|++++. .+...
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~-------~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~  150 (212)
T 1f97_A           78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTI-------SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD  150 (212)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEE-------ECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC--
T ss_pred             eEEEEEEEccCCCcccEEEEEEEEEcCCCCccc-------CCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccc
Confidence            999999998765  4566778888876644311       1224678999999999944799999999999998 77543


Q ss_pred             CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC--
Q psy14540        152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD--  229 (291)
Q Consensus       152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--  229 (291)
                      .......                ..+.|                 ........|.|.++..+|+|.|+|.|.|..|..  
T Consensus       151 ~~~~~~~----------------~~~~~-----------------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  197 (212)
T 1f97_A          151 AKKTRAF----------------MNSSF-----------------TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR  197 (212)
T ss_dssp             ---CBSC----------------SSSCE-----------------EECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEE
T ss_pred             ccccccc----------------cCcee-----------------EecCCCceEEEEecChhhCcEEEEEEccccCCccc
Confidence            3210000                00000                 111223456666777777777777777776655  


Q ss_pred             CceeEEEEec
Q psy14540        230 NHSSNLRVNV  239 (291)
Q Consensus       230 ~~~~~l~v~~  239 (291)
                      +..+.|.|..
T Consensus       198 s~~~~l~V~~  207 (212)
T 1f97_A          198 SEAAHMDAVE  207 (212)
T ss_dssp             CCCEEEEEES
T ss_pred             cceEEEEEEE
Confidence            6666666654

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.93  E-value=3.5e-25  Score=157.56  Aligned_cols=124  Identities=18%  Similarity=0.248  Sum_probs=94.3

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCe-eEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .+|.|...|....+.+|++++|.|.+.+.+.+. +.|++++..+...              ...|.|.+++.+|+|.|+|
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~--------------~~~L~i~~~~~~d~G~Y~C   71 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ--------------ASSYFIDAATVNDSGEYRC   71 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS--------------CSEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC--------------ceEEEEeCCCcccCEEEEE
Confidence            368888899888999999999999998876555 8999999876521              1358899999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540         80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI  148 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~  148 (291)
                      .+.+..+  +..+.+.|...+      ... .. ....+.+|+.+.|.|.+..+.|.+.+.|+++|..+
T Consensus        72 ~~~n~~~--s~~~~l~V~~~~------~~~-~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~  130 (175)
T 1fnl_A           72 QTNLSTL--SDPVQLEVHIGW------LLL-QA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR  130 (175)
T ss_dssp             ECSSSCC--CCCEEEEEECSS------EEE-EC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEE
T ss_pred             EeeCCcc--cccEEEEEeCCC------cee-eC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEc
Confidence            9986443  455666776322      111 11 23567799999999999444455699999999876

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.93  E-value=1.6e-25  Score=179.07  Aligned_cols=215  Identities=20%  Similarity=0.303  Sum_probs=153.0

Q ss_pred             cceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC---CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          9 FIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA---GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      +....+.+|+.+.|.|.+.. .|.+.+.|++++..+.   ..+...     ...  ...|.|.+++.+|+|.|+|.+.+.
T Consensus       108 ~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-----~~~--~~~L~i~~~~~~d~G~Y~C~~~n~  180 (382)
T 1cs6_A          108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV-----SQT--TGNLYIAKTEASDLGNYSCFATSH  180 (382)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE-----CTT--TCCEEESSCCGGGCEEEEEEEEEE
T ss_pred             CCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEE-----ecC--ceEEEEEeeCcccCeeEEEEEEEc
Confidence            44567899999999998653 6778999999987643   111111     111  135899999999999999999876


Q ss_pred             CCcee-----eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540         85 VGSQT-----HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        85 ~~~~~-----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      .+...     ....+.+................+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...       .
T Consensus       181 ~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~-------~  252 (382)
T 1cs6_A          181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA-FGNPVPQIKWRKLDGSQTSK-------W  252 (382)
T ss_dssp             ETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEE-EEESCCEEEEEECCSCCSCC-------C
T ss_pred             cccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEE-ccCCCCEEEEEECCcccccE-------E
Confidence            54322     22344544321111111222223446778899999999998 68899999999988765431       1


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec---------------------------------------
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE---------------------------------------  200 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~---------------------------------------  200 (291)
                      ......|.|..+..+|.|.|+|.+.|..|.......+.+..                                       
T Consensus       253 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g  332 (382)
T 1cs6_A          253 LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDG  332 (382)
T ss_dssp             SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETT
T ss_pred             ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECC
Confidence            12345799999999999999999999887655444443110                                       


Q ss_pred             -----------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        201 -----------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       201 -----------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                                 ....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       333 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          333 QPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence                       13579999999999999999999999998888888875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.93  E-value=6.6e-25  Score=161.15  Aligned_cols=168  Identities=19%  Similarity=0.299  Sum_probs=109.7

Q ss_pred             ecCCcEEEEEEecC-CCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeee
Q psy14540         15 QPGPPVSLKCIATG-NPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSA   92 (291)
Q Consensus        15 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~   92 (291)
                      ..++.+.|.|.+.+ .|.+.+.|++++..+.. .++..     ........|.|.+++.+|+|.|+|.+.+..+.....+
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~   89 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT-----GVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV   89 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEE-----EEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEE-----EEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEE
Confidence            46777888888877 45889999999998873 33332     1223356799999999999999999998777666555


Q ss_pred             eEEEEcCC--------------CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540         93 DMRVYDAP--------------GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        93 ~l~v~~~~--------------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      .+.|....              ............+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....
T Consensus        90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~  168 (212)
T 2r15_A           90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALAQTDHCNLKF  168 (212)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEE
T ss_pred             EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE-cCCCCceEEEEECCeECccCCCEEEEE
Confidence            55443200              000001122233445778899999999999 689999999999999987766555443


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      .......|.|..+..+|.|.|+|.|.|..|
T Consensus       169 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g  198 (212)
T 2r15_A          169 EAGRTAYFTINGVSTADSGKYGLVVKNKYG  198 (212)
T ss_dssp             ETTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             cCCCEEEEEEcCcchHHCeEEEEEEEcCCC
Confidence            322233444444444444444444444333

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.93  E-value=4.5e-25  Score=177.26  Aligned_cols=226  Identities=23%  Similarity=0.295  Sum_probs=154.1

Q ss_pred             ecceeeeecCCcEEEEEEe-cCCCCCeeEEEECCe---ecCCCeeEeceEEeeccceEEEEEEeecCCCCCe---EEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGY---PLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG---IYQCT   80 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~   80 (291)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++.   ............... ..  ..|.|.+++..|+|   .|+|.
T Consensus       106 ~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~--~~L~i~~v~~~d~G~~~~Y~C~  182 (395)
T 1bih_A          106 KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG-PD--GNLYFTIVTKEDVSDIYKYVCT  182 (395)
T ss_dssp             EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC-TT--SCEEEEEECGGGCCSSEEEEEE
T ss_pred             CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEc-CC--CcEEEEEEeeccCCCceEEEEE
Confidence            3456678899999999996 567889999999862   111100000011111 11  24889999999999   99999


Q ss_pred             EeCCCCceeeeeeEEEEcC---CCCCc-ccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540         81 ATNRVGSQTHSADMRVYDA---PGQPQ-DVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI  156 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~---~~~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~  156 (291)
                      +.+..+.............   ...+. ....+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+........
T Consensus       183 a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~  261 (395)
T 1bih_A          183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY-GSNPMGYPNYFKNGKDVNGNPEDRI  261 (395)
T ss_dssp             EECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEE-ECSSCCCCEEEETTEECCCCTTSSE
T ss_pred             EEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEe-ccCCCCeEEEEECCEEcCCCCceeE
Confidence            9988776444333222211   11000 00011112345678899999999999 6889999999999998865433222


Q ss_pred             ecc-CCceEEEEEeeCCCCCceeEEEEEEecCCCCCC-ceEEEEe-----------------------------------
Q psy14540        157 RSS-GEYTSSLSIATLSTGHSGNYTCVASNTVASDNH-SSNLRVN-----------------------------------  199 (291)
Q Consensus       157 ~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~~~~~-----------------------------------  199 (291)
                      ... ......|.|..+..+|.|.|+|.+.|..|.... .+.+.+.                                   
T Consensus       262 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v  341 (395)
T 1bih_A          262 TRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNV  341 (395)
T ss_dssp             ESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCC
T ss_pred             EEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCee
Confidence            221 122347999999999999999999999887544 3333310                                   


Q ss_pred             ---------------ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        200 ---------------EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       200 ---------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                                     .....|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus       342 ~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          342 VWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence                           01347999999999999999999999998888888776

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.93  E-value=1.2e-24  Score=157.71  Aligned_cols=172  Identities=19%  Similarity=0.225  Sum_probs=103.3

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .+|.|...|.. .+.+|++++|.|.+.+.+. .+.|+|++..+......     .........|.|.+++.+|+|.|+|.
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~   76 (196)
T 2d3v_A            4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQN-----PLEPKNKARFSIPSMTEHHAGRYRCY   76 (196)
T ss_dssp             CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEEC-----CCSSTTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccccc-----ccCCccccEEEeccCChhHCeEEEEE
Confidence            37888888874 8999999999999987655 89999999876532110     01122346799999999999999999


Q ss_pred             EeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCce-EEe
Q psy14540         81 ATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI-TIR  157 (291)
Q Consensus        81 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~~  157 (291)
                      +.+..+.  .+..+.|.|......|    ..... ....+.+|+.++|.|.+ .+.| +.+.|++++..+...... ...
T Consensus        77 a~n~~g~~~~s~~~~l~V~~~~~~p----~i~~~-~~~~v~~G~~v~L~C~~-~~~p-~~~~W~k~g~~~~~~~~~~~~~  149 (196)
T 2d3v_A           77 YYSPAGWSEPSDPLELVVTGFYNKP----TLSAL-PSPVVTSGENVTLQCGS-RLRF-DRFILTEEGDHKLSWTLDSQLT  149 (196)
T ss_dssp             EEETTEECBCCCCEEEEEECSSCCC----EEEC------------CEEEEEE-SSCC-SEEEEEEC---CCEEEEECEEC
T ss_pred             EeCCCCcCCcCccEEEEecCCCCCC----eEEcc-CCccccCCCcEEEEEEc-CCCC-CEEEEEccCCcccccccccccc
Confidence            9876543  2455677777643222    11112 22467899999999999 6777 899999999876422111 011


Q ss_pred             ccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        158 SSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      ..+.....|.|.++..+|.|.|+|.+.|.
T Consensus       150 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~  178 (196)
T 2d3v_A          150 PSGQFQALFPVGPVTPSHRWMLRCYGSRR  178 (196)
T ss_dssp             TTSCEEEEEECCCCBTTBCEEEEEEEEET
T ss_pred             cCCCceeEEEeeecCcccCeeEEEEEEcc
Confidence            11122345555555555555555555543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.93  E-value=3.5e-24  Score=160.83  Aligned_cols=222  Identities=13%  Similarity=0.174  Sum_probs=122.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.|...|. ..+.+|++++|.|.+.. +.+.+.|+|+|..+...... .  ..........|.|.+++.+|+|.|+|.+
T Consensus         7 kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~--~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   81 (257)
T 1b6u_A            7 KPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLI-G--EHHDGVSKANFSIGPMMQDLAGTYRCYG   81 (257)
T ss_dssp             CCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEE-C--BCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred             CCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceee-e--eccCCCceEEEEeecCCcccCEEEEEeE
Confidence            678887776 67899999999999974 56789999998754311110 0  0011233467999999999999999999


Q ss_pred             eCCC-----CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540         82 TNRV-----GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI  156 (291)
Q Consensus        82 ~~~~-----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~  156 (291)
                      .+..     ...+..+.|.|......|    .....+. ..+.+|+.++|.|.+ .+. .+.+.|+|+|..+........
T Consensus        82 ~~~~~~~~~s~~S~~~~L~V~~~~~~P----~l~~~p~-~~V~~G~~vtL~C~~-~~~-~~~~~w~k~g~~~~~~~~~~~  154 (257)
T 1b6u_A           82 SVTHSPYQLSAPSDPLDIVITGLYEKP----SLSAQPG-PTVLAGESVTLSCSS-RSS-YDMYHLSREGEAHERRFSAGP  154 (257)
T ss_dssp             ECSSCTTSCCCCCCCEEEEEECSSCCC----EEECSSC-TTCBTTCEEEEEEEC-SSC-CSEEEEEETTSSCEECCBCBC
T ss_pred             eccCCCccccccCCCEEEecccCCCCc----ceEccCC-CccCCCCEEEEEEeC-CCC-CcEEEEEECCcccCccccccc
Confidence            7532     123556677787644322    1111222 357899999999998 454 468999999876543211100


Q ss_pred             eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-----ccCCc
Q psy14540        157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-----ASDNH  231 (291)
Q Consensus       157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-----~~~~~  231 (291)
                      ...+.                                       ....|.|.+++  |+|.|+|.+.+..     ...+.
T Consensus       155 ~~~~~---------------------------------------~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~  193 (257)
T 1b6u_A          155 KVNGT---------------------------------------FQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSD  193 (257)
T ss_dssp             CSSSC---------------------------------------CBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCC
T ss_pred             ccCCc---------------------------------------eeEEEEecccc--cCEEEEEEEEcCCCCcccccCCC
Confidence            00000                                       13456667776  8888888887642     34567


Q ss_pred             eeEEEEecCCCCCCCCcc--cccCCceEEEEEEeecCCCCceEEEEECC
Q psy14540        232 SSNLRVNVPPHIGPFTFG--ELMEGVRTQVACVVQSGDLPLSLQWYKNG  278 (291)
Q Consensus       232 ~~~l~v~~~p~~~~~~~~--~~~~g~~v~l~C~~~~~~p~~~v~W~~~~  278 (291)
                      .+.|.|..+|.+..+...  ....|..+.|.|.+  |.+...+.|..-+
T Consensus       194 pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~--~~~~~~~~~~~~~  240 (257)
T 1b6u_A          194 PLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA--EQKLISEEDLNLD  240 (257)
T ss_dssp             CEEECCBCCC---------------------------------------
T ss_pred             CEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE--cchHHHHHHhhhh
Confidence            788888888776532221  26789999999987  7778899997654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.93  E-value=2.6e-24  Score=156.38  Aligned_cols=188  Identities=21%  Similarity=0.306  Sum_probs=126.4

Q ss_pred             cceeecceeee-ecCCcEEEEEEecCCCCCeeEEEECC-eecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          4 QLIYKFIQQTL-QPGPPVSLKCIATGNPTPHISWKLDG-YPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         4 ~~~~~~~~~~v-~~g~~v~l~C~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      .+.+.|....+ .+|++++|.|.+.+.|.+.+.|++.. ..+. ....      .. .....|.|.+++.+|+|.|+|.+
T Consensus         2 ~v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~-~~~~------~~-~~~~~L~I~~v~~~D~G~Y~C~a   73 (202)
T 1vca_A            2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVT------NE-GTTSTLTMNPVSFGNEHSYLCTA   73 (202)
T ss_dssp             EEEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS-SEEE------EE-TTEEEEEESSCCGGGCSEEEEEE
T ss_pred             eEEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc-ceEE------Ec-CCccEEEECcCCHHHCEEEEEEE
Confidence            34566666544 59999999999998888999999843 2221 1111      11 12345999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--ceeEEeECCEeccCCCceEEecc
Q psy14540         82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      .+..+.....+.|.|...|..+   ...  . . ..+.+|+.++|.|.+..+.|.  +.+.|++++..+.....   ...
T Consensus        74 ~n~~~~~~~~~~l~V~~~p~~~---~~~--~-~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~---~~~  143 (202)
T 1vca_A           74 TCESRKLEKGIQVEIYSFPKDP---EIH--L-S-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEF---LED  143 (202)
T ss_dssp             EETTEEEEEEEEEEEEBCCSCC---EEE--E-S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEEC---CSC
T ss_pred             EECCceEeeEEEEEEEeCCCCC---EeC--C-c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccc---ccc
Confidence            9888777788889998766432   111  1 1 457899999999999544554  47999999987632100   000


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-------CCce
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-------DNHS  232 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-------~~~~  232 (291)
                                   ....+.+                    .....|.|.....+|+|.|+|.|.|..+.       ...+
T Consensus       144 -------------~~~~~~~--------------------~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~  190 (202)
T 1vca_A          144 -------------ADRKSLE--------------------TKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAV  190 (202)
T ss_dssp             -------------CSSCCCE--------------------EEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEE
T ss_pred             -------------cCcCcce--------------------EEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeE
Confidence                         0000000                    01234667777788889999999987754       3457


Q ss_pred             eEEEEecCCC
Q psy14540        233 SNLRVNVPPH  242 (291)
Q Consensus       233 ~~l~v~~~p~  242 (291)
                      +.|.|.++|.
T Consensus       191 ~~L~V~y~P~  200 (202)
T 1vca_A          191 KELQVYISPK  200 (202)
T ss_dssp             EECCEECCC-
T ss_pred             EEEEEecCCC
Confidence            7888888885

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.92  E-value=1e-24  Score=174.35  Aligned_cols=131  Identities=30%  Similarity=0.530  Sum_probs=101.5

Q ss_pred             cceeeeecCCcEEEEEEecCCCCCeeEEEEC-CeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      +....+.+|+.+.|.|.+.+.|.+.+.|+++ +..+.......      ..  ...|.|.+++.+|+|.|+|.+.|..|.
T Consensus       212 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~------~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~  283 (384)
T 3kld_A          212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH------KS--NGILEIPNFQQEDAGSYECVAENSRGK  283 (384)
T ss_dssp             CSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEEC------TT--SCEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceec------CC--CcEEEECCCChhhCEEEEEEEEcCCCe
Confidence            4456788999999999999999999999994 44444221111      11  135999999999999999999999998


Q ss_pred             eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceE
Q psy14540         88 QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEIT  155 (291)
Q Consensus        88 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~  155 (291)
                      ......|.|...|.       .........+.+|+.+.|.|.+ .|.|.+.+.|+++|..+....+..
T Consensus       284 ~~~~~~l~v~~~P~-------~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~  343 (384)
T 3kld_A          284 NVAKGQLTFYAQPN-------WVQIINDIHVAMEESVFWECKA-NGRPKPTYRWLKNGDPLLTRDRIQ  343 (384)
T ss_dssp             EEEEEEEEEEEEEE-------EEECCCCEEECTTCCEEEECEE-EEESCCEEEEEETTEECCCBTTEE
T ss_pred             EEEEEEEEEecCCc-------cccCCCceEecCCCCEEEEeEC-CccCCCeEEEEECCEECCCCccEE
Confidence            88888888876541       1233445778899999999999 689999999999999886655443

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.92  E-value=5.3e-24  Score=150.78  Aligned_cols=124  Identities=16%  Similarity=0.284  Sum_probs=94.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...|....+.+|+.+.|.|.+.+.+ .+.+.|++++..+....              ..+.|.+++.+|+|.|+|.
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~--------------~~~~~~~~~~~d~G~Y~C~   69 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT--------------QPSYRFKANNNDSGEYTCQ   69 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC--------------SSEEEEECCGGGCEEEEEE
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc--------------cceEEEecccccCeEEEEE
Confidence            46777788877899999999999998865 67899999999877321              1245778999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      +.+..  ....+.+.|...+      ... . .....+.+|+.+.|.|.+..+.|.+.+.|++++..+.
T Consensus        70 ~~~~~--~s~~~~l~v~~~~------~~~-~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~  128 (170)
T 3ry4_A           70 TGQTS--LSDPVHLTVLFEW------LVL-Q-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK  128 (170)
T ss_dssp             ETTSB--CCCCEEEEEECCS------EEE-E-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEE
T ss_pred             EeCCC--ceEeEEEEEECCc------eEe-c-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcc
Confidence            98543  3445667776533      111 1 2235678899999999996677779999999987753

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.92  E-value=4e-25  Score=161.88  Aligned_cols=141  Identities=21%  Similarity=0.446  Sum_probs=101.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-----CCeeEe--ceEEeeccceEEEEEEeecCCCCC
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-----GDRFVM--GQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      ++.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.     ......  ........   ..|.|.+++..|+
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~L~i~~~~~~d~   80 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP---TGITFKSVTREDT   80 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET---TEEECSCCCTTSC
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec---cEEEEeeCCHHHC
Confidence            4567777888899999999999999988889999999775421     000000  00000001   5699999999999


Q ss_pred             eEEEEEEeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC
Q psy14540         75 GIYQCTATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA  152 (291)
Q Consensus        75 G~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~  152 (291)
                      |.|+|.+.+..+  .....+.|.|...|..+..       .....+.+|+.+.|.|.+..+.|.+.+.|++++..+....
T Consensus        81 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~-------~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~  153 (209)
T 1nbq_A           81 GTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTV-------NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP  153 (209)
T ss_dssp             SEEEEEEEETTSSCEECCEEECCEEBCCCCCCC-------CCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCS
T ss_pred             cEEEEEEecCCCCccceEEEEEEEecCCcCCCc-------ccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcc
Confidence            999999997754  3455667777776644311       1234578999999999965789999999999998876543

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.92  E-value=1.9e-23  Score=152.92  Aligned_cols=187  Identities=18%  Similarity=0.262  Sum_probs=124.4

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEe--------------ceEEeeccceEEEEEEeecC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVM--------------GQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~i~~~~   70 (291)
                      +.+.+.+..+.+|++++|.|...+.+.+.+.|++++..........              ..+.....+  .+|.|.+++
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~--~~L~i~~v~   79 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN--GSLLFQMIT   79 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTT--SCEEECSCC
T ss_pred             ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecC--CeEEEcccc
Confidence            5566777889999999999997777888999999764322111100              000000111  359999999


Q ss_pred             CCCCeEEEEEEeCCC-CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540         71 VEDSGIYQCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus        71 ~~d~G~y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      ..|+|.|+|.+.+.. +.....+.|.|...+..|.   .. .....  +.+|+.+.|.|.+ .+.| +.+.|++++..+.
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~---i~-~~~~~--~~~g~~v~l~C~~-~~~p-p~i~W~~~g~~l~  151 (208)
T 3r4d_A           80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPF---LQ-VTNTT--VKELDSVTLTCLS-NDIG-ANIQWLFNSQSLQ  151 (208)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCE---EE-ESCSS--CCTTCCEEEEEEC-SCTT-CEEEEEETTEECC
T ss_pred             ccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCE---Ee-cCCce--EeeCCCEEEEEEC-CCCC-CceEEEECCEeCC
Confidence            999999999999774 4566677788876654331   11 11222  7889999999998 5655 7999999999886


Q ss_pred             CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-
Q psy14540        150 SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-  228 (291)
Q Consensus       150 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-  228 (291)
                      ...+......                                          ...|.|.++..+|+|.|+|.|.|..|. 
T Consensus       152 ~~~~~~~~~~------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  189 (208)
T 3r4d_A          152 LTERMTLSQN------------------------------------------NSILRIDPIKREDAGEYQCEISNPVSVR  189 (208)
T ss_dssp             CCSSEEEETT------------------------------------------TTEEEESSCCGGGCEEEEEEEECTTCCE
T ss_pred             CCCCeEEcCC------------------------------------------CCEEEEeccCHHhCeEEEEEEecCCCcc
Confidence            5544332211                                          245777777777788888888877744 


Q ss_pred             CCceeEEEEecCCCC
Q psy14540        229 DNHSSNLRVNVPPHI  243 (291)
Q Consensus       229 ~~~~~~l~v~~~p~~  243 (291)
                      .+..+.|.|..+|..
T Consensus       190 ~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          190 RSNSIKLDIIFDPHH  204 (208)
T ss_dssp             ECCCEEECCC-----
T ss_pred             cCCceeeeEEeCCcc
Confidence            566777777666543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.92  E-value=4.6e-25  Score=162.18  Aligned_cols=185  Identities=20%  Similarity=0.271  Sum_probs=123.1

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCC----CCeeEEEECC----------------eecC------CCeeEeceEEeecc
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDG----------------YPLA------GDRFVMGQYMSLHG   58 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~----------------~~~~------~~~~~~~~~~~~~~   58 (291)
                      |...+....+.+|+++.|.|.+.+.+    .+.+.|++++                ..+.      ..+.....  ....
T Consensus         3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~   80 (214)
T 3jz7_A            3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS--NDVK   80 (214)
T ss_dssp             ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESC--SCGG
T ss_pred             eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEec--cCcc
Confidence            44556778899999999999998755    4689999843                2221      01111100  0011


Q ss_pred             ceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce
Q psy14540         59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT  138 (291)
Q Consensus        59 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  138 (291)
                      ....+|.|.+++.+|+|.|+|.+.+..+.....+.|.|...+..+..       .....+.+|+.+.|.|.+..+.|.+.
T Consensus        81 ~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~-------~~~~~~~~g~~v~l~C~~~~g~p~~~  153 (214)
T 3jz7_A           81 SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRC-------FVDGSEEIGNDFKLKCEPKEGSLPLQ  153 (214)
T ss_dssp             GTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEE-------EEESCCBTTCCEEEEEECSBCCSSCE
T ss_pred             CCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCcee-------eeecceecCCcEEEEecCCCCCCCCE
Confidence            23466999999999999999999988887888889999887643311       11234678999999999866899999


Q ss_pred             eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeE
Q psy14540        139 ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNY  218 (291)
Q Consensus       139 ~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y  218 (291)
                      +.|++++...........                                          ......|.|.++..+|+|.|
T Consensus       154 v~W~~~~~~~~~~~~~~~------------------------------------------~~~~~~L~i~~~~~~d~G~Y  191 (214)
T 3jz7_A          154 FEWQKLSDSQTMPTPWLA------------------------------------------EMTSPVISVKNASSEYSGTY  191 (214)
T ss_dssp             EEEEECSTTCCCCGGGGG------------------------------------------GTTSSEEEECSCCGGGCEEE
T ss_pred             EEEEECCCCCccCcccee------------------------------------------ccCCCEEEEecCCHHHCEEE
Confidence            999995432211110000                                          00123577777777778888


Q ss_pred             EEEeeeCCccCCceeEEEEecC
Q psy14540        219 TCVASNTVASDNHSSNLRVNVP  240 (291)
Q Consensus       219 ~C~~~~~~~~~~~~~~l~v~~~  240 (291)
                      +|.|.|..|.....+.|.|..|
T Consensus       192 ~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          192 SCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             EEEEECSSCEEEEEEEECCBCC
T ss_pred             EEEEEcCCCcEEEEEEEEEeCC
Confidence            8888887777777777766644

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.92  E-value=2.2e-24  Score=156.59  Aligned_cols=174  Identities=18%  Similarity=0.180  Sum_probs=110.6

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .+|.|...|. ..+.+|++++|.|.+.+.+. .+.|+|++..+.......     ........|.|.+++.+|+|.|+|.
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C~   76 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP-----QELVKKGQFPIPSITWEHTGRYRCY   76 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC-----HHHHTTTEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc-----ccCCcccEEEECCCCHHHCeEEEEE
Confidence            3788888886 48999999999999987654 799999998664110000     0011124588999999999999999


Q ss_pred             EeCCC-C--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCce-EE
Q psy14540         81 ATNRV-G--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI-TI  156 (291)
Q Consensus        81 ~~~~~-~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~  156 (291)
                      +.+.. +  ..+..+.|.|...+..|  ...  .. ....+.+|+.++|.|.+ .+. .+.+.|++++..+...... ..
T Consensus        77 a~n~~~g~~~~s~~~~l~V~~~~~~p--~i~--~~-~~~~v~~G~~v~L~C~~-~~~-~~~v~W~k~g~~~~~~~~~~~~  149 (198)
T 1ugn_A           77 YGSDTAGRSESSDPLELVVTGAYIKP--TLS--AQ-PSPVVNSGGNVTLQCDS-QVA-FDGFILCKEGEDEHPQCLNSQP  149 (198)
T ss_dssp             EEETTTEECCCCCCEEEEEECSSCCC--EEE--EE-SCSEEETTCCEEEEEEC-SSC-CSEEEEEEC------CEEEC--
T ss_pred             EECCCCCcccCCccEEEEEcccccCC--ccc--cC-CccccCCCCcEEEEEec-CCC-CcEEEEEECCCccCCccccccc
Confidence            98766 4  34566777777643222  111  11 22567899999999999 565 6799999999876432111 11


Q ss_pred             eccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ...+.....|.|.++..+|.|.|+|.|.|..+
T Consensus       150 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          150 HARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             ----CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            11112245666777777777777776666543

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.92  E-value=3.5e-24  Score=156.07  Aligned_cols=133  Identities=19%  Similarity=0.213  Sum_probs=95.2

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCC-----CeeEEEE-CCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPT-----PHISWKL-DGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~-----~~v~W~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      +...+....+.+|+++.|.|.+.+.+.     +.+.|++ ++.... ..+......  .......+|.|.+++.+|+|.|
T Consensus         5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y   82 (202)
T 3bp6_B            5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEE--QLPLGKALFHIPSVQVRDSGQY   82 (202)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGG--GGGGTEEEEEECSCCGGGCEEE
T ss_pred             EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeec--cccCCeeEEEECCCCHHHCcEE
Confidence            444556788999999999999988765     7899999 443332 223222110  0112446799999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540         78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI  148 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~  148 (291)
                      +|.+.+..+.....+.|.|...+..|...        ...+.+|+.+.|.|.+ .|.|.+.+.|++++..+
T Consensus        83 ~C~~~~~~~~~~~~~~l~V~~~~~~p~~~--------~~~~~~g~~v~l~C~~-~g~P~p~v~W~~~~~~~  144 (202)
T 3bp6_B           83 RCLVICGAAWDYKYLTVKVKASYMRIDTR--------ILEVPGTGEVQLTCQA-RGYPLAEVSWQNVSVPA  144 (202)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBCCCCEEEE--------EEECTTTCCEEEEEEE-EEBSCCEEEETTCCSCC
T ss_pred             EEEEEeCCCcceEEEEEEecCCCCcccEE--------EEecCCCCeEEEEEEc-cccCCceEEEEeCCCCc
Confidence            99999887777788888888765332111        1245689999999999 68999999999977654

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.92  E-value=2.8e-24  Score=166.54  Aligned_cols=186  Identities=23%  Similarity=0.398  Sum_probs=124.0

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      |.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... ..... ..  ..|.|.+++..|+|.|+|.+.
T Consensus       109 p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~-~~~~~-~~--~~L~i~~~~~~d~G~Y~C~a~  184 (304)
T 2yd9_A          109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNG-RIKQL-RS--GALQIESSEETDQGKYECVAT  184 (304)
T ss_dssp             CEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTT-SEEEC-TT--SCEEECSCCGGGCEEEEEEEE
T ss_pred             CeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcc-eEEeC-CC--eEEEEccCCcccCEEEEEEEE
Confidence            677777888889999999999999998899999999998876321100 00011 11  259999999999999999999


Q ss_pred             CCCCceeee-eeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCC
Q psy14540         83 NRVGSQTHS-ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE  161 (291)
Q Consensus        83 ~~~~~~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~  161 (291)
                      +..+..... ..+.|......|    .....+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+.......     .
T Consensus       185 n~~g~~~~~~~~l~v~~~~~~P----~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~l~~~~~~~-----~  254 (304)
T 2yd9_A          185 NSAGVRYSSPANLYVRVQNVAP----RFSILPMSHEIMPGGNVNITCVA-VGSPMPYVKWMQGAEDLTPEDDMP-----V  254 (304)
T ss_dssp             ETTEEEECCCEEEEEECCCEEE----EEEECCCCBCCCTTCCEEEEEEE-EEESCCEEEEEETTEECSCSSSCC-----B
T ss_pred             eCCCCEEeccEEEEEEeeccCC----cEEecCCceEEcCCCeEEEEEEE-eeeCCCEEEEEECCEECCCccccc-----C
Confidence            887754432 455665432212    12223344668899999999999 688999999999998875543210     0


Q ss_pred             ceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       162 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                      ..                                       ..|.+.++  +|+|.|+|.|.|..|.....+.|.|..++
T Consensus       255 ~~---------------------------------------~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  293 (304)
T 2yd9_A          255 GR---------------------------------------NVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP  293 (304)
T ss_dssp             SE---------------------------------------EEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred             Cc---------------------------------------EEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence            01                                       12333332  46777777777777777777777776655


Q ss_pred             CC
Q psy14540        242 HI  243 (291)
Q Consensus       242 ~~  243 (291)
                      .+
T Consensus       294 ~~  295 (304)
T 2yd9_A          294 KA  295 (304)
T ss_dssp             --
T ss_pred             cc
Confidence            43

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.92  E-value=8.3e-24  Score=157.35  Aligned_cols=200  Identities=20%  Similarity=0.336  Sum_probs=134.8

Q ss_pred             eeecceeeeecCCcEEEEEEecCCCC-CeeEEEECCeecCCCeeE--------eceEEe----------eccceEEEEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLDGYPLAGDRFV--------MGQYMS----------LHGDVISHVNI   66 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~--------~~~~~~----------~~~~~~~~l~i   66 (291)
                      +..|....+.+|+++.|.|.+.+.+. +.+.|++++.......+.        ......          ....  ..|.|
T Consensus         4 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~~L~i   81 (231)
T 2pet_A            4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ--GRLVL   81 (231)
T ss_dssp             CCCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT--CCEEE
T ss_pred             ccCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC--ceEEE
Confidence            44677789999999999999998774 889999865432100000        001111          1111  23999


Q ss_pred             eecCCCCCeEEEEEEeCCC-CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCce-EEEEEeeCCCCCceeEEeEC
Q psy14540         67 SSVRVEDSGIYQCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRA-GVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~C~~~~~~p~~~~~W~~~  144 (291)
                      .+++.+|+|.|+|.+.+.. +.....+.|.|...+..|    .....+....+.+|+.+ .|.|.+..+.|.+.+.|+++
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~----~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~  157 (231)
T 2pet_A           82 AEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEAT----EVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRN  157 (231)
T ss_dssp             SSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCC----EEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEET
T ss_pred             cccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCc----EEecCCcceeecCCCceEEEEEEeECcccCCEEEEEEC
Confidence            9999999999999999876 777888889998876543    22233344566789888 99999866889999999999


Q ss_pred             CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      +..+.......       ............+.|.|.+.                    +.|.|.....+|.|.|+|.|.|
T Consensus       158 ~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~--------------------~~L~i~~~~~dd~g~Y~C~a~n  210 (231)
T 2pet_A          158 GQRLEVPVEMN-------PEGYMTSRTVREASGLLSLT--------------------STLYLRLRKDDRDASFHCAAHY  210 (231)
T ss_dssp             TEECCCCSSCC-------SSEEEEEEEEECTTSCEEEE--------------------EEEEEECCGGGGGCEEEEEEEE
T ss_pred             CccCccccccc-------cceeecceeEecCCCeEEEE--------------------EEEEEecchhhCCceEEEEEEc
Confidence            99886654100       00111222233456677663                    4677776666779999999999


Q ss_pred             C-----Ccc-CCceeEEEEe
Q psy14540        225 T-----VAS-DNHSSNLRVN  238 (291)
Q Consensus       225 ~-----~~~-~~~~~~l~v~  238 (291)
                      .     .+. .+..+.|.|+
T Consensus       211 ~~~~~~~~~~~s~~~~l~V~  230 (231)
T 2pet_A          211 SLPEGRHGRLDSPTFHLTLH  230 (231)
T ss_dssp             ECGGGCEEEEECCCEECCCC
T ss_pred             CCcccccccccccceEEEEe
Confidence            4     344 5555555553

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.92  E-value=1.5e-23  Score=150.21  Aligned_cols=159  Identities=18%  Similarity=0.223  Sum_probs=108.6

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++....              .....|.|.+++.+|+|.|+|.
T Consensus         7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~--------------~~~~~L~i~~v~~~D~G~Y~C~   70 (184)
T 2gi7_A            7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY--------------QDQAVLFIPAMKRSLAGRYRCS   70 (184)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCE--------------ESSSEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcccc--------------CcccEEEECcCChhhCceEEEE
Confidence            36888888775 8999999999999886 678999999986510              0113488999999999999999


Q ss_pred             EeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540         81 ATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        81 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      +.+..+.  .+..+.|.|......|.  ..  ..+ ...+.+|+.++|.|.+ .+.+ +.+.|+++|..+.......   
T Consensus        71 a~n~~g~~~~s~~~~l~V~~~~~~p~--i~--~~p-~~~v~~G~~v~l~C~~-~~~~-~~~~w~k~g~~~~~~~~~~---  140 (184)
T 2gi7_A           71 YQNGSLWSLPSDQLELVATGVFAKPS--LS--AQP-GPAVSSGGDVTLQCQT-RYGF-DQFALYKEGDPAPYKNPER---  140 (184)
T ss_dssp             EEETTEEBCCCCCEEEEEESSSCCCE--EE--EEC-CCSSCCTTCEEEEEEC-SSCC-CEEEEEECCCCTTSCCCCE---
T ss_pred             EEcCCCccCCCCCEEEEecCcCCCCE--EE--eCC-CceecCCCcEEEEEEc-CCCC-cEEEEEECCCcCcceecCC---
Confidence            9876642  34456677755432221  11  112 3456789999999997 4544 6999999998775422111   


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                        .....|.|.++..+|.|.|+|.+.|..
T Consensus       141 --~~~~~L~i~~v~~~D~G~Y~C~a~n~~  167 (184)
T 2gi7_A          141 --WYRASFPIITVTAAHSGTYRCYSFSSR  167 (184)
T ss_dssp             --EEEESSSEEEETTCCSEEEEEEEECTT
T ss_pred             --CceEEEEEccCCccCCeEEEEEEEeCC
Confidence              113345566666666666666666643

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.91  E-value=7e-24  Score=155.79  Aligned_cols=190  Identities=16%  Similarity=0.272  Sum_probs=120.5

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----CCee---EeceEEeeccceEEEEEEeecCCC
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----GDRF---VMGQYMSLHGDVISHVNISSVRVE   72 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~~~~---~~~~~~~~~~~~~~~l~i~~~~~~   72 (291)
                      |.+...| ...+.+|++++|.|.+.+.+.+.+.|+|.  +....     ....   ...+.........++|.|.+++.+
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   80 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG   80 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence            6677777 88999999999999999888899999982  22110     0000   000111111334577999999999


Q ss_pred             CCeEEEEEEeCCCC---ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEec
Q psy14540         73 DSGIYQCTATNRVG---SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPI  148 (291)
Q Consensus        73 d~G~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~  148 (291)
                      |+|.|+|.+.+..+   .....+.|.|...+..++  . ....+....+.+|+.++|.|.+....|+ +.+.|+++|..+
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~-i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  157 (213)
T 3mj8_L           81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAP--S-VTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPI  157 (213)
T ss_dssp             GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCC--E-EEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCC--e-EEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCccc
Confidence            99999999998776   345667788875432111  1 1111222334489999999999544454 499999999988


Q ss_pred             cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540        149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS  228 (291)
Q Consensus       149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  228 (291)
                      .........              .. ..|.|..                    ...|.|..+..+|+|.|+|.|.|..+.
T Consensus       158 ~~~~~~~~~--------------~~-~~~~~~~--------------------~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3mj8_L          158 TQGVKTTQP--------------SK-SDSKYMA--------------------TSYLTMTADAWKSRNTFICKVTHGGNT  202 (213)
T ss_dssp             CTTEEECCC--------------EE-ETTEEEE--------------------EEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred             CCCcccCCc--------------Cc-cCCcEEE--------------------EEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence            543110000              00 1122221                    245777777777888888888877654


Q ss_pred             CCc
Q psy14540        229 DNH  231 (291)
Q Consensus       229 ~~~  231 (291)
                      ...
T Consensus       203 ~~~  205 (213)
T 3mj8_L          203 VEK  205 (213)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            433

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.91  E-value=3.2e-24  Score=156.08  Aligned_cols=139  Identities=17%  Similarity=0.252  Sum_probs=93.9

Q ss_pred             ceeecceeeeecCCcEEEEEE-ecCCCC-CeeEEEECCeecC---CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCI-ATGNPT-PHISWKLDGYPLA---GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~-~~~~~~-~~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ....+....+.+|+.+.|.|. +.+.|. +.+.|++++..+.   ......     ...  ...|.|.+++.+|+|.|+|
T Consensus        11 ~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~-----~~~--~~~L~i~~v~~~d~G~Y~C   83 (201)
T 3s97_C           11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFV-----SQT--NGNLYIANVEASDKGNYSC   83 (201)
T ss_dssp             CSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEE-----CTT--TCCEEESSCCGGGCEEEEE
T ss_pred             CcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEE-----EcC--CCeEEECcCCcccCeEEEE
Confidence            334557788999999999999 777777 8999999987664   111111     111  1459999999999999999


Q ss_pred             EEeCCCCceee---eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540         80 TATNRVGSQTH---SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD  151 (291)
Q Consensus        80 ~~~~~~~~~~~---~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~  151 (291)
                      .+.+..+....   .+.+.+.....................+.+|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~  157 (201)
T 3s97_C           84 FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA-LGNPVPDIRWRKVLEPMPST  157 (201)
T ss_dssp             EEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEE-EEESCCEEEEEETTBCCCTT
T ss_pred             EEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEc-cCCCCCceEEEeCCCcCCCc
Confidence            99875544332   2333333221111111111122235778899999999999 68899999999999876543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=162.27  Aligned_cols=184  Identities=22%  Similarity=0.442  Sum_probs=125.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..   .++..     .. .  ..|.|.+++..|+|.|+
T Consensus        98 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-----~~-~--~~L~i~~v~~~d~G~Y~  169 (291)
T 2wim_A           98 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM-----LA-N--NNLQILNINKSDEGIYR  169 (291)
T ss_dssp             CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEE-----CT-T--SCEEETTCCGGGCEEEE
T ss_pred             CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEE-----cc-C--CCEEEEecchhhCEEEE
Confidence            45666667777899999999999999888899999999877652   22211     11 1  24899999999999999


Q ss_pred             EEEeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540         79 CTATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI  156 (291)
Q Consensus        79 C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~  156 (291)
                      |.+.+..+..  ...+.+.+..+|...     .........+.+|+.+.|.|.+ .+.|.+.+.|+++|..+....+...
T Consensus       170 C~~~n~~~~~~~~~~~~~~v~~~p~~~-----~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~  243 (291)
T 2wim_A          170 CEGRVEARGEIDFRDIIVIVNVPPAIS-----MPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENEKYIL  243 (291)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEBCCCCB-----CSCSEEECCSSSCCEEEEECBC-CCBSCCEEEEEETTEECCCTTTEEE
T ss_pred             EEEEECCCCeeEEeeEEEEeccCCccc-----cCcccccceecCCCeEEEEEEe-ecCCCCeEEEEECCEECcCCccEEE
Confidence            9998776443  345566666654221     1111113467789999999999 7889999999999998866544332


Q ss_pred             eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEE
Q psy14540        157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR  236 (291)
Q Consensus       157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~  236 (291)
                      ..                                          ....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus       244 ~~------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~  281 (291)
T 2wim_A          244 KG------------------------------------------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ  281 (291)
T ss_dssp             CS------------------------------------------TTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred             cC------------------------------------------CccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEE
Confidence            21                                          123566677777777777777777777777777777


Q ss_pred             EecCC
Q psy14540        237 VNVPP  241 (291)
Q Consensus       237 v~~~p  241 (291)
                      |..++
T Consensus       282 v~~~~  286 (291)
T 2wim_A          282 VFVQH  286 (291)
T ss_dssp             C----
T ss_pred             EEEec
Confidence            76554

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.91  E-value=4.1e-23  Score=148.54  Aligned_cols=135  Identities=16%  Similarity=0.144  Sum_probs=94.1

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .+|.|...|.. .+.+|++++|.|.+.+ +...+.|+|++..+......     .........|.|.+++.+|+|.|+|.
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-----~~~~~~~~~L~I~~v~~~D~G~Y~C~   75 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK-----PPERINKVKFYIPDMNSRMAGQYSCI   75 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS-----SCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc-----cCCCcceeEEEeCcCCcccCeEEEEE
Confidence            36888888877 8999999999999875 45689999999865410000     01122346699999999999999999


Q ss_pred             EeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540         81 ATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus        81 ~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      +.+..+  ..+..+.|.|......|  ...  ..+ ...+.+|+.++|.|.+ .+ +.+.+.|+++|..+.
T Consensus        76 ~~~~~~~~~~s~~~~l~V~~~~~~p--~i~--~~p-~~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~  139 (188)
T 1oll_A           76 YRVGELWSEPSNLLDLVVTEMYDTP--TLS--VHP-GPEVISGEKVTFYCRL-DT-ATSMFLLLKEGRSSH  139 (188)
T ss_dssp             EEETTEECCCCCCEEEEEESCSCCC--EEE--EES-CSEEETTCEEEEEEEC-SS-SCSEEEEEEESSSCE
T ss_pred             ecCCCCCCCCCCceEEEecccCCCC--eEE--ECC-CCccccCCEEEEEEEc-CC-CCCEEEEEECCcccc
Confidence            986543  23455677776543222  111  112 2457899999999997 44 456899999987653

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.91  E-value=5.6e-24  Score=165.83  Aligned_cols=174  Identities=20%  Similarity=0.325  Sum_probs=116.6

Q ss_pred             cceeeeecCCcEEEEEEecC----------CCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          9 FIQQTLQPGPPVSLKCIATG----------NPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~----------~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      +....+.+|+.+.|.|.+.+          .|.+.+.|++++..+.. .++..     ......+.|.|.+++..|+|.|
T Consensus       105 ~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y  179 (317)
T 2y25_A          105 VCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT-----GVTGEQIWLQINEPTPNDKGKY  179 (317)
T ss_dssp             HHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEE-----EECSSEEEEEEESCCGGGCEEE
T ss_pred             CCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEE-----eccCCEEEEEECcCCcccCeeE
Confidence            34455678888888888766          68899999999988773 33222     2233456799999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEEEcC---------------CCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEe
Q psy14540         78 QCTATNRVGSQTHSADMRVYDA---------------PGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWL  142 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~  142 (291)
                      +|.+.+..+.....+.+.+...               ... .........+....+.+|+.+.|.|.+ .+.|.+.+.|+
T Consensus       180 ~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~  257 (317)
T 2y25_A          180 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK-NRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWL  257 (317)
T ss_dssp             EEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTT-TSCEEEEBCCSEEEEETTSBBCEEEEE-ECSSCCEEEEE
T ss_pred             EEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcC-CCCcccccCCccEEEEcCCEEEEEEEE-ecCCCCEEEEE
Confidence            9999998887776666654310               000 001122223445678899999999999 68999999999


Q ss_pred             ECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        143 KNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      +++..+....+..+.........|.|..+..+|.|.|+|.|.|..|.
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  304 (317)
T 2y25_A          258 KNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS  304 (317)
T ss_dssp             ESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEE
T ss_pred             ECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCe
Confidence            99998877666555433223344555555555554444444444443

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.91  E-value=7.3e-23  Score=150.31  Aligned_cols=187  Identities=19%  Similarity=0.264  Sum_probs=125.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC-------------CCeeEeceEEeeccceEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA-------------GDRFVMGQYMSLHGDVISHVNI   66 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~l~i   66 (291)
                      .|.|...|....+.+|++++|.|.+.+.+.+.+.|+|..  ....             ..++..     ......++|.|
T Consensus         1 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I   75 (213)
T 3r06_A            1 DIQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSG-----SGSGRDSSFTI   75 (213)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EEETTEEEEEE
T ss_pred             CCeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEE-----eccCCEEEEEE
Confidence            367778888899999999999999998888899999832  1110             111111     12334568999


Q ss_pred             eecCCCCCeEEEEEEeCCCC-ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeEC
Q psy14540         67 SSVRVEDSGIYQCTATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKN  144 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~  144 (291)
                      .+++.+|+|.|+|.+.+..+ .......|.|......|   ... ..+....+..|+.++|.|.+..+.| .+.+.|+++
T Consensus        76 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p---~v~-~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~  151 (213)
T 3r06_A           76 SSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKP---TVS-IFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVD  151 (213)
T ss_dssp             SSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCC---EEE-EECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCc---eee-eeCCCceecCCCCcEEEEEEeeecCCceEEEEEEC
Confidence            99999999999999987643 23445567774333222   111 1122233456888999999954444 458999999


Q ss_pred             CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      |..+....             +........+.|.|.+                    ...|.|.....+|+|.|+|.|.|
T Consensus       152 g~~l~~~~-------------~~~~~~~~~~~g~~~~--------------------~s~l~i~~~~~~d~g~YtC~v~n  198 (213)
T 3r06_A          152 GSEKRDGV-------------LQSVTDQDSKDSTYSL--------------------SSTLSLTKADYERHNLYTCEVTH  198 (213)
T ss_dssp             TEEECTTE-------------EEEECCCCTTTCCEEE--------------------EEEEEEEHHHHHTCCEEEEEEEE
T ss_pred             CcccCCce-------------EeccCceeCCCCcEEE--------------------EEEEEeCHHHhccCCeEEEEEEe
Confidence            98875421             1222233445566665                    34677888888899999999998


Q ss_pred             CCccCC
Q psy14540        225 TVASDN  230 (291)
Q Consensus       225 ~~~~~~  230 (291)
                      ......
T Consensus       199 ~~~~~~  204 (213)
T 3r06_A          199 KTSTAA  204 (213)
T ss_dssp             TTCSSC
T ss_pred             cccCcc
Confidence            764433

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.91  E-value=1.5e-23  Score=154.03  Aligned_cols=166  Identities=17%  Similarity=0.187  Sum_probs=108.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEE--EEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS--HVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C   79 (291)
                      +|.|...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+.......     .......  .|.|.+++.+|+|.|+|
T Consensus         9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C   81 (218)
T 1uct_A            9 MPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRR-----LKFWNETDPEFVIDHMDANKAGRYQC   81 (218)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEE-----CC----CCCEEEECSCCGGGCEEEEE
T ss_pred             CCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccccc-----CCCCcceeeEEEEcccccccCEEEEE
Confidence            678888777 57999999999999876 678899999886543111000     0011113  69999999999999999


Q ss_pred             EEeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe
Q psy14540         80 TATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR  157 (291)
Q Consensus        80 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  157 (291)
                      .+.+..+.  .+..+.|.|......|  .  ....+ ...+.+|+.++|.|.. .+.|.+.+.|+|+|..+...  ..  
T Consensus        82 ~a~n~~~~~~~s~~~~l~V~~~~~~P--~--i~~~p-~~~v~~G~~v~L~C~~-~~~~~~~~~W~k~g~~~~~~--~~--  151 (218)
T 1uct_A           82 QYRIGHYRFRYSDTLELVVTGLYGKP--F--LSADR-GLVLMPGENISLTCSS-AHIPFDRFSLAKEGELSLPQ--HQ--  151 (218)
T ss_dssp             EEEETTTEEEECCCEEEEEECSSCCC--E--EEESS-CSEECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCCS--EE--
T ss_pred             EEEcCCCceeecCCEEEEEcCcccCC--E--EEeCC-CCccCCCCCEEEEEeC-CCCCCCEEEEEECCCccccc--cc--
Confidence            99986543  3345667776533222  1  11122 3467899999999966 56677899999999876431  11  


Q ss_pred             ccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540        158 SSGEYTSSLSIATLSTGHSGNYTCVASN  185 (291)
Q Consensus       158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~  185 (291)
                       .......|.|.++..+|+|.|+|.+.|
T Consensus       152 -~~~~~~~L~I~~v~~~D~G~Y~C~a~n  178 (218)
T 1uct_A          152 -SGEHPANFSLGPVDLNVSGIYRCYGWY  178 (218)
T ss_dssp             -ECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred             -CCCccCEEEEccCCcccCEEEEEEEEc
Confidence             111234455555555555555555554

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.91  E-value=1.7e-23  Score=155.16  Aligned_cols=183  Identities=13%  Similarity=0.151  Sum_probs=110.4

Q ss_pred             ceeeeecCCcEEEEEEecCCCC---CeeEEEECCeecC-----CCe---------eEece--EEeeccceEEEEEEeecC
Q psy14540         10 IQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLA-----GDR---------FVMGQ--YMSLHGDVISHVNISSVR   70 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~-----~~~---------~~~~~--~~~~~~~~~~~l~i~~~~   70 (291)
                      .++.+.+|++++|.|.+.+.+.   ..|.|+|++....     ++.         +....  .......+.++|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            4477899999999999976443   3699999764211     100         00000  001112345789999999


Q ss_pred             CCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540         71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  150 (291)
Q Consensus        71 ~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~  150 (291)
                      .+|+|.|+|.+.+..+.....+.+.+.....         .......+.+|+.+.|.|.+..+.|.|.+.|++++..+..
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~  162 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAALGS---------DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP  162 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEBCCC---------CCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeecccee---------cccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence            9999999999998776665555555443321         1122356778999999999965579999999986544322


Q ss_pred             CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC
Q psy14540        151 DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN  230 (291)
Q Consensus       151 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~  230 (291)
                      ........               +..|.|.                       .+.+..+..+|+|.|+|.|.|..+...
T Consensus       163 ~~~~~~~~---------------~~~g~~~-----------------------v~s~l~v~~~d~G~YtC~a~N~~g~~~  204 (226)
T 4f80_A          163 TVEAPVVA---------------DGVGLYA-----------------------VAASVIMRGSSGEGVSCTIRSSLLGLE  204 (226)
T ss_dssp             CEECCCEE---------------CTTSCEE-----------------------EEEEEEECC----CEEEEEEETTTTEE
T ss_pred             CCceEEEE---------------CCCCcEE-----------------------EEEEEEechhcCcEEEEEEEeCCCCeE
Confidence            21111111               1112221                       122334456677777777777777777


Q ss_pred             ceeEEEEec
Q psy14540        231 HSSNLRVNV  239 (291)
Q Consensus       231 ~~~~l~v~~  239 (291)
                      .+..|.|..
T Consensus       205 ~~~~v~v~e  213 (226)
T 4f80_A          205 KTASISIAD  213 (226)
T ss_dssp             EEEEECCCT
T ss_pred             EEEEEEECC
Confidence            777777754

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.91  E-value=1.4e-22  Score=167.65  Aligned_cols=229  Identities=15%  Similarity=0.239  Sum_probs=136.7

Q ss_pred             cCCcEEEEEEecCC-CCC-eeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540         16 PGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTATNRVGSQTHS   91 (291)
Q Consensus        16 ~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~   91 (291)
                      .|+.++|.|.+.+. |.+ .|+|++++.....  ..........+  ...+.|.|...... .|.|+|.+.+..+.....
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~--~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~  225 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQ--RTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKE  225 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCcccCce--EecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEE
Confidence            46899999999884 654 8999996543210  00000000111  23356889888877 899999999887764443


Q ss_pred             e-----------eEEEEcCCC----------------------------------------------CCcccceeccCCc
Q psy14540         92 A-----------DMRVYDAPG----------------------------------------------QPQDVKLVTSNSR  114 (291)
Q Consensus        92 ~-----------~l~v~~~~~----------------------------------------------~~~~~~~~~~~~~  114 (291)
                      .           .+.+..+|.                                              ...........+.
T Consensus       226 ~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~  305 (512)
T 1zvo_C          226 IFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPA  305 (512)
T ss_pred             EecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCC
Confidence            3           233332221                                              0000111122223


Q ss_pred             ceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      ...+.+|+.++|.|.+.+.+| ...++|+++|..+.....              ......+..|.|..            
T Consensus       306 ~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~--------------~~~~~~~~~gt~~~------------  359 (512)
T 1zvo_C          306 VQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVE--------------EGLLERHSNGSQSQ------------  359 (512)
T ss_pred             hHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCcee--------------ccceecCCCCeEEE------------
Confidence            334567999999999954445 359999999987541100              00111123344432            


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE------ecCCCCCCCCcccccCCceEE-EEEEeecC
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV------NVPPHIGPFTFGELMEGVRTQ-VACVVQSG  266 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v------~~~p~~~~~~~~~~~~g~~v~-l~C~~~~~  266 (291)
                              .+.|.|.....+|+|.|+|.|.|..+... ...+..      ..+|.+...+...  .|+.+. |.|.+.+.
T Consensus       360 --------~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~--~~~~~~~L~C~~~g~  428 (512)
T 1zvo_C          360 --------HSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQAPVKLSLNLLASSD--PPEAASWLLCEVSGF  428 (512)
T ss_pred             --------EEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCCCCCCCEEEEEccCc--CCCCceEEEEEEeee
Confidence                    34688888888899999999998875443 222222      2345443332222  789999 99999333


Q ss_pred             CCC-ceEEEEECCEEccCC
Q psy14540        267 DLP-LSLQWYKNGLAISQP  284 (291)
Q Consensus       267 ~p~-~~v~W~~~~~~l~~~  284 (291)
                      +|+ ..|.|+|||.++...
T Consensus       429 ~P~~i~v~W~k~g~~~~~~  447 (512)
T 1zvo_C          429 SPPNILLMWLEDQREVNTS  447 (512)
T ss_pred             CCCCcEEEEEECCeECcCc
Confidence            554 479999999998654

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.91  E-value=7.7e-24  Score=172.34  Aligned_cols=178  Identities=16%  Similarity=0.254  Sum_probs=116.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CCCC-eeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTP-HISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~   76 (291)
                      +|.+...+....+.+|+.+.|.|.+.+ .|.+ .+.|+++|..+..............+.   ..+.|.|.+++.+|+|.
T Consensus       116 ~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  195 (438)
T 1qgc_4          116 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS  195 (438)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCe
Confidence            455555443334456889999999987 6666 899999999887541111111101111   23679999999999999


Q ss_pred             EEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEEeEC--CEecc---
Q psy14540         77 YQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWLKN--GLPIL---  149 (291)
Q Consensus        77 y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~~---  149 (291)
                      |+|.+.+..+....  .+.+......    ... ..+....+.+|+.++|.|.+ .+.|  .+.+.|+++  +..+.   
T Consensus       196 Y~C~a~n~~~~~~~--~~~~~~~~~~----~~~-~~~~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~~~~~  267 (438)
T 1qgc_4          196 YTCEATHKTSTSPI--VKSFNRNECE----VML-VESGGGLVKPGGSLKLSCTA-SGFIFNRCAMSWVRQTPEKRLEWVA  267 (438)
T ss_dssp             EEEEEEETTCSSCE--EEEEETTC-C----CEE-EEECCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEEETTTEEEEEE
T ss_pred             EEEEEEecccCCce--ecccccccce----eEE-ecCCceEEecCCcEEEEEEE-cccccCCcEEEEEECCCCCCcEEEE
Confidence            99999987766432  3333322111    111 12344678899999999999 5766  679999996  43221   


Q ss_pred             --------------CCCceEEecc-CCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        150 --------------SDAEITIRSS-GEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       150 --------------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                                    ...++..... ......|.|.++..+|+|.|+|.+.|..
T Consensus       268 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  320 (438)
T 1qgc_4          268 TISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDG  320 (438)
T ss_dssp             EECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSS
T ss_pred             EEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccC
Confidence                          1233333322 2335689999999999999999999843

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.91  E-value=1.4e-22  Score=147.37  Aligned_cols=137  Identities=15%  Similarity=0.212  Sum_probs=95.1

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .+|.|...|. ..+.+|++++|.|.+. .+.+.+.|+|+|..+...... .  ..........|.|.+++.+|+|.|+|.
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~-~--~~~~~~~~~~l~I~~v~~~D~G~Y~C~   81 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLI-G--EHHDGVSKANFSISRMTQDLAGTYRCY   81 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEE-C--EEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceee-e--ecCCCCceEEEEeccCCcccCeEEEEe
Confidence            3678887776 6789999999999997 467789999998765421110 0  001123346799999999999999999


Q ss_pred             EeCCC-----CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540         81 ATNRV-----GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus        81 ~~~~~-----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      +.+..     ...+..+.|.|......|.  ..  ..+. ..+.+|+.++|.|.+ .+ +.+.+.|+|+|..+.
T Consensus        82 a~~~~~~~~~~~~s~~~~l~V~~~~~~p~--i~--~~p~-~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~  148 (201)
T 1nkr_A           82 GSVTHSPYQVSAPSDPLDIVIIGLYEKPS--LS--AQPG-PTVLAGENVTLSCSS-RS-SYDMYHLSREGEAHE  148 (201)
T ss_dssp             EEBTTBTTCCCCCCCCEEEEEECSSCCCE--EE--EESC-SEECTTCEEEEEEEE-SS-CCSEEEEEETTCSSC
T ss_pred             EecCCCCccccCCCCCEEEEeeccCCCCc--ee--cCCC-CccCCCCeEEEEEeC-CC-CCceEEEEECCcccC
Confidence            97542     2234566777776542221  11  1122 367899999999998 44 567899999997664

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.91  E-value=1.7e-23  Score=161.07  Aligned_cols=181  Identities=22%  Similarity=0.393  Sum_probs=127.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC---eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD---RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...   ++..     .. .  ..|.|.+++..|+|.|+
T Consensus       100 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-----~~-~--~~L~i~~~~~~d~G~Y~  171 (291)
T 1qz1_A          100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV-----LS-N--NYLQIRGIKKTDEGTYR  171 (291)
T ss_dssp             CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEE-----CT-T--SCEEETTCCGGGCEEEE
T ss_pred             cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEE-----cc-C--CcEEEccCccccCeEEE
Confidence            566777777888999999999999999888999999999876521   1111     11 1  24899999999999999


Q ss_pred             EEEeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC----
Q psy14540         79 CTATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA----  152 (291)
Q Consensus        79 C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~----  152 (291)
                      |.+.+..+.  ....+.+.|..+|.     ...........+.+|+.+.|.|.+ .+.|.+.+.|++++..+....    
T Consensus       172 C~a~n~~~~~~~~~~~~l~v~~~p~-----~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~  245 (291)
T 1qz1_A          172 CEGRILARGEINFKDIQVIVNVPPT-----VQARQSIVNATANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIENEEEDDE  245 (291)
T ss_dssp             EEEEEGGGTEEEEEEEEEEEEEEEE-----EEESCSEEEEETTSCCCEEEEEEE-EEESCCEEEEEETTEECCCC--CCS
T ss_pred             EEEEecCCCceeeEEEEEEEecCCc-----ccccccccccccccCceEEEEEEE-EEeCCCcEEEEECCEECcCCCCCCc
Confidence            999875433  23455666654431     111112234567899999999999 688999999999998876543    


Q ss_pred             ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCce
Q psy14540        153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  232 (291)
Q Consensus       153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  232 (291)
                      +....                                          .....|.|.++..+|+|.|+|.|.|..|..+..
T Consensus       246 ~~~~~------------------------------------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  283 (291)
T 1qz1_A          246 KHIFS------------------------------------------DDSSELTIRNVDKNDEAEYVCIAENKAGEQDAS  283 (291)
T ss_dssp             SEEEC------------------------------------------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ceEEc------------------------------------------CCCcEEEEEecChhcCEEEEEEEEeCCCceEEE
Confidence            11111                                          113456777777777777777777777776666


Q ss_pred             eEEEEe
Q psy14540        233 SNLRVN  238 (291)
Q Consensus       233 ~~l~v~  238 (291)
                      +.|.|.
T Consensus       284 ~~l~V~  289 (291)
T 1qz1_A          284 IHLKVF  289 (291)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666664

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.91  E-value=1.8e-23  Score=153.63  Aligned_cols=191  Identities=19%  Similarity=0.274  Sum_probs=121.4

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eec----------C---CCeeEeceEEeeccceEEEEEEee
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPL----------A---GDRFVMGQYMSLHGDVISHVNISS   68 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~----------~---~~~~~~~~~~~~~~~~~~~l~i~~   68 (291)
                      .++..|..+.+.+|+++.|.|.+.+.+.+.+.|++++  ..+          .   ..++..     ......++|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~~   77 (213)
T 3d9a_L            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSG-----SGSGTDFTLSINS   77 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-----EEETTEEEEEESS
T ss_pred             eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEE-----EcCCCEEEEEECC
Confidence            3566688889999999999999998888889999853  211          0   112211     1233446899999


Q ss_pred             cCCCCCeEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCE
Q psy14540         69 VRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGL  146 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~  146 (291)
                      ++.+|+|.|+|.+.+..+.. .....+.|......|   ......+. ....+|+.++|.|.+..+.|.+ .+.|+++|.
T Consensus        78 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p---~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~  153 (213)
T 3d9a_L           78 VETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAP---TVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  153 (213)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCC---EEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             CChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCc---eeEeECCC-hhhcCCCcEEEEEEEeeecCCceEEEEEcCCC
Confidence            99999999999999776542 334467775533222   11111122 2234788999999995446665 899999999


Q ss_pred             eccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        147 PILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                      .+.......             ........|.|..                    .+.|.|.++..+|+|.|+|.|.|..
T Consensus       154 ~~~~~~~~~-------------~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~G~Y~C~a~n~~  200 (213)
T 3d9a_L          154 ERQNGVLNS-------------WTDQDSKDSTYSM--------------------SSTLTLTKDEYERHNSYTCEATHKT  200 (213)
T ss_dssp             EECTTEEEE-------------ECCCCTTTCCEEE--------------------EEEEEEEHHHHHHCCEEEEEEECTT
T ss_pred             cCcceeeec-------------CCCccCCCCCEEE--------------------EEEEEEeccccCCCCEEEEEEEEcc
Confidence            876441111             1111222333322                    2467777777777777777777776


Q ss_pred             ccCCceeEEE
Q psy14540        227 ASDNHSSNLR  236 (291)
Q Consensus       227 ~~~~~~~~l~  236 (291)
                      ........+.
T Consensus       201 ~~~~~~~~i~  210 (213)
T 3d9a_L          201 STSPIVKSFN  210 (213)
T ss_dssp             CSSCEEEEEE
T ss_pred             CCCceEEEec
Confidence            5545444443

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.91  E-value=1.9e-22  Score=150.59  Aligned_cols=188  Identities=16%  Similarity=0.226  Sum_probs=126.2

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC-------------CCeeEeceEEeeccceEEEEEEe
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA-------------GDRFVMGQYMSLHGDVISHVNIS   67 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~   67 (291)
                      +.+...|....+.+|++++|.|.+.+.+.+.+.|++..  ....             ..++..     ......++|.|.
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~   99 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSG-----SGSGTDFTLTIS   99 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EEETTEEEEEES
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEE-----EcCCCEEEEEEC
Confidence            45666788889999999999999998888899999842  1110             112211     123345779999


Q ss_pred             ecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeECC
Q psy14540         68 SVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNG  145 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~  145 (291)
                      +++.+|+|.|+|.+.+..+. ......+.|...+..|   ... ..+....+.+|+.++|.|.+..+.| .+.+.|+++|
T Consensus       100 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p---~v~-~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g  175 (237)
T 3sob_L          100 SLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAP---SVF-IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDN  175 (237)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCC---EEE-EECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             CCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCC---ceE-EeCCChhhccCCceEEEEEEcccCCCceEEEEEECC
Confidence            99999999999999865542 3344567776533222   111 1112223346888999999965466 6899999999


Q ss_pred             EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540        146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT  225 (291)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  225 (291)
                      ..+....             +..........|.|.+                    .+.|.|.....+|+|.|+|.|.|.
T Consensus       176 ~~~~~~~-------------~~~~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~  222 (237)
T 3sob_L          176 ALQSGNS-------------QESVTEQDSKDSTYSL--------------------SSTLTLSKADYEKHKVYACEVTHQ  222 (237)
T ss_dssp             EECCSSE-------------EEEECCCCTTTCCEEE--------------------EEEEEEEHHHHTTCCEEEEEEECT
T ss_pred             CCCCCce-------------eecccccccCCCcEEE--------------------EEEEEEcHHHccCCCcEEEEEeeC
Confidence            8875431             1222333445566655                    346788888888999999999988


Q ss_pred             CccCCce
Q psy14540        226 VASDNHS  232 (291)
Q Consensus       226 ~~~~~~~  232 (291)
                      .......
T Consensus       223 ~~~~~~~  229 (237)
T 3sob_L          223 GLSSPVT  229 (237)
T ss_dssp             TCSSCEE
T ss_pred             CCCCcee
Confidence            7544433

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.91  E-value=2.1e-22  Score=147.49  Aligned_cols=183  Identities=19%  Similarity=0.272  Sum_probs=117.8

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-------------CCeeEeceEEeeccceEEEEEEee
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-------------GDRFVMGQYMSLHGDVISHVNISS   68 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~   68 (291)
                      .|.. |....+.+|++++|.|.+.+.+.+.+.|+++  +..+.             ..++..     ......+.|.|.+
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~~   76 (210)
T 1lk3_L            3 VLTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSG-----SGSGTDFTLTIDP   76 (210)
T ss_dssp             CEEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EEETTEEEEEESS
T ss_pred             cEEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEE-----EecCCEEEEEECC
Confidence            3455 8888999999999999999887788999984  22220             111111     1123446899999


Q ss_pred             cCCCCCeEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCE
Q psy14540         69 VRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGL  146 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~  146 (291)
                      ++.+|+|.|+|.+.+..+.. .....|.|......|   ......+. ..+.+|+.++|.|.+.+..|.+ .+.|+++|.
T Consensus        77 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P---~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~  152 (210)
T 1lk3_L           77 VEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAP---TVSIFPPS-TEQLATGGASVVCLMNNFYPRDISVKWKIDGT  152 (210)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCC---EEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             CCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCC---eEEEECCc-hhhccCCcEEEEEEEEeEeCCceEEEEEeCCc
Confidence            99999999999998766532 234466775533222   11111121 2234799999999995445654 899999999


Q ss_pred             eccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        147 PILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                      .+......             .........|.|..                    .+.|.|..+..+|+|.|+|.|.|..
T Consensus       153 ~~~~~~~~-------------~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~G~Y~C~a~n~~  199 (210)
T 1lk3_L          153 ERRDGVLD-------------SVTDQDSKDSTYSM--------------------SSTLSLTKADYESHNLYTCEVVHKT  199 (210)
T ss_dssp             ECCTTEEE-------------EECCCCTTTCCEEE--------------------EEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCCCceE-------------ccCCccCCCCCEEE--------------------EEEEEEChHHhccCCcEEEEEEecC
Confidence            87543111             01112223344432                    2467788888888888888888876


Q ss_pred             ccC
Q psy14540        227 ASD  229 (291)
Q Consensus       227 ~~~  229 (291)
                      ...
T Consensus       200 ~~~  202 (210)
T 1lk3_L          200 SSS  202 (210)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.91  E-value=3.5e-24  Score=168.91  Aligned_cols=189  Identities=19%  Similarity=0.219  Sum_probs=137.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCe-EEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG-IYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~   80 (291)
                      +|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....      ........+|.|.+++..|+| .|+|.
T Consensus       158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~~Y~C~  231 (347)
T 2ifg_A          158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM------KSGGLPSLGLTLANVTSDLNRKNVTCW  231 (347)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC------CCCCSSEEEEEEESCCSTTTTCCEEEC
T ss_pred             CCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc------cceecccceEEEeeCChHHCCCeEEEE
Confidence            78899899999999999999999999988999999998875441110      012233467999999999999 99999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      +.+..|.....+.+.|..+|.      .     ......+|+.++|.|.+ .|.|.|.+.|+++|..+............
T Consensus       232 a~n~~g~~~~~~~l~V~~~P~------i-----~~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~  299 (347)
T 2ifg_A          232 AENDVGRAEVSVQVNVSFPAS------V-----QLHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLE  299 (347)
T ss_dssp             CEETTEECCEEECCCCBEEEE------E-----EECCCEESSSEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEECC
T ss_pred             EEcCCCCEEEEEEEEEcCCCe------e-----eeccCccCceEEEEEEe-eecCCCcEEEEeCCEECCCCcceeeEEEe
Confidence            998887777777776654331      0     11234578999999999 68899999999999988754432211100


Q ss_pred             CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC
Q psy14540        161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP  240 (291)
Q Consensus       161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~  240 (291)
                                   .+.+.                    .....+|.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus       300 -------------~~~~~--------------------~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~  346 (347)
T 2ifg_A          300 -------------PAANE--------------------TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN  346 (347)
T ss_dssp             -------------CCTTC--------------------CCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCC
T ss_pred             -------------ecCCC--------------------cccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCC
Confidence                         00000                    011456777777888888888888888888888888887766


Q ss_pred             C
Q psy14540        241 P  241 (291)
Q Consensus       241 p  241 (291)
                      |
T Consensus       347 P  347 (347)
T 2ifg_A          347 P  347 (347)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.91  E-value=2.9e-24  Score=161.75  Aligned_cols=142  Identities=16%  Similarity=0.254  Sum_probs=98.2

Q ss_pred             ceeecceeeeecCCcEEEEEEecC---CCCCeeEEEECCeecCCC-eeE------------------------eceEEee
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPLAGD-RFV------------------------MGQYMSL   56 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~~~-~~~------------------------~~~~~~~   56 (291)
                      +...+..+.+.+|++++|.|.+.+   .+.+.+.|++++...... .+.                        ...+...
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            344556788999999999999986   678889999987543100 000                        0000000


Q ss_pred             ccceEEEEEEeecCCCCCeEEEEEEeCCCCce-----eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee
Q psy14540         57 HGDVISHVNISSVRVEDSGIYQCTATNRVGSQ-----THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT  131 (291)
Q Consensus        57 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  131 (291)
                      ...+..+|.|.+++.+|+|.|+|.+.+..+..     ...+.|.|...+..+.   .....+....+.+|+.+.|.|.+ 
T Consensus        85 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~---~~~~~~~~~~v~~g~~v~L~C~~-  160 (250)
T 2fbo_J           85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNN---VHVSTAEVVQVDEGNDITMTCPC-  160 (250)
T ss_dssp             SCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSC---CEECCCSEEECCTTCCEEECCCE-
T ss_pred             ccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCe---EEEecCceEEecCCCcEEEEEEe-
Confidence            01112469999999999999999999766542     4477788876543321   12234455777889999999999 


Q ss_pred             CCCCCceeEEeECCEeccC
Q psy14540        132 KGDPPLTISWLKNGLPILS  150 (291)
Q Consensus       132 ~~~p~~~~~W~~~~~~~~~  150 (291)
                      .+.|.|.+.|++++..+..
T Consensus       161 ~g~p~p~v~W~k~~~~~~~  179 (250)
T 2fbo_J          161 TDCANANVTWYTGPTFFEN  179 (250)
T ss_dssp             ESCTTCEEEEEEEEECSSC
T ss_pred             cCCCCCeeEEEeCCCcccc
Confidence            6878889999999987754

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.90  E-value=2.3e-22  Score=148.61  Aligned_cols=193  Identities=13%  Similarity=0.227  Sum_probs=122.5

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC-----CCeeEEEECCeecC---CCe---------eEeceEEee--ccceEEEEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDGYPLA---GDR---------FVMGQYMSL--HGDVISHVNI   66 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~---~~~---------~~~~~~~~~--~~~~~~~l~i   66 (291)
                      ...+....+.+|+++.|.|.+.+.|     ...+.|++++..+.   ...         +........  ......+|.|
T Consensus         5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I   84 (222)
T 3sbw_C            5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQI   84 (222)
T ss_dssp             BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEE
T ss_pred             ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEE
Confidence            4455667899999999999987644     34799999764332   100         000000000  0223467999


Q ss_pred             eecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeEC-C
Q psy14540         67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN-G  145 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~  145 (291)
                      .+++.+|+|.|+|.+.+ .+.....+.|.|..++..+...       ....+.+|+.+.|.|.+ .|.|.+.+.|+++ +
T Consensus        85 ~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~-------~~~~~~~g~~v~L~C~~-~g~P~p~i~W~~~~g  155 (222)
T 3sbw_C           85 TDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQR-------ILVVDPVTSEHELTCQA-EGYPKAEVIWTSSDH  155 (222)
T ss_dssp             SSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEE-------EEEEETTTTEEEEEEEE-EEBSCCEEEEEETTC
T ss_pred             cCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCce-------eeeeecCCCcEEEEEEe-cCCCCCeEEEEECCC
Confidence            99999999999999998 5666777888888665332111       11256789999999999 5799999999998 5


Q ss_pred             EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540        146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT  225 (291)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  225 (291)
                      ..+........               .....|.|.-                       .....+...|.|.|+|.|.|.
T Consensus       156 ~~~~~~~~~~~---------------~~~~~~~~~~-----------------------~~~l~v~~~d~g~Y~C~a~n~  197 (222)
T 3sbw_C          156 QVLSGKTTTTN---------------SKREEKLFNV-----------------------TSTLRINTTTNEIFYCTFRRL  197 (222)
T ss_dssp             CEECCEEEEEE---------------CC----CEEE-----------------------EEEEEEECCTTCEEEEEEEET
T ss_pred             ceecCccceEE---------------EcCCCCCEEE-----------------------EEEEEEeccCCcEEEEEEEeC
Confidence            44432211100               1112222211                       122234568899999999999


Q ss_pred             CccCCceeEEEEecCCCCCC
Q psy14540        226 VASDNHSSNLRVNVPPHIGP  245 (291)
Q Consensus       226 ~~~~~~~~~l~v~~~p~~~~  245 (291)
                      .+.......|.|..+|...+
T Consensus       198 ~g~~~~~~~l~v~~~p~~~~  217 (222)
T 3sbw_C          198 DPEENHTAELVIPELPLAHP  217 (222)
T ss_dssp             TTTEEEEEEEECCCC-----
T ss_pred             ccceeeEEEEEecCCcccCC
Confidence            98888888888877665443

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=154.54  Aligned_cols=186  Identities=15%  Similarity=0.216  Sum_probs=115.0

Q ss_pred             eecceeeeecCCcEEEEEEecCCCCC---eeEEEECCeecCCCeeEe---------c-----eEE---eeccceEEEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRFVM---------G-----QYM---SLHGDVISHVNI   66 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~---------~-----~~~---~~~~~~~~~l~i   66 (291)
                      ..|..+++.+|++++|.|.+.+.+.+   .|.|+|++..+.......         .     +..   .......++|.|
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            45677889999999999999886654   489999876543111100         0     000   000112356999


Q ss_pred             eecCCCCCeEEEEEEeCCCCceee-eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540         67 SSVRVEDSGIYQCTATNRVGSQTH-SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~  145 (291)
                      .+++.+|+|.|.|.+.+..+.... ...+.+...+..      .........+..|+.+.+.|.+ .+.|.+.+.|++++
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~c~~-~g~p~p~i~W~~~~  156 (218)
T 4frw_A           84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLP------SLNPGPALEEGQGLTLAASCTA-EGSPAPSVTWDTEV  156 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCC------EEEECSCEETTCCSEEEEEEEE-EEBSCCEEEEEESS
T ss_pred             eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccc------eeeeeeeeeeeeccccceeeec-cCCcCceEEEEECC
Confidence            999999999999998865544333 333344333211      1122334567789999999998 68899999999998


Q ss_pred             EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540        146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT  225 (291)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  225 (291)
                      ..+..............                                       .+.|.|.++..+|+|.|+|.|.|.
T Consensus       157 ~~~~~~~~~~~~~~~~~---------------------------------------~s~L~i~~~~~~d~g~YtC~a~N~  197 (218)
T 4frw_A          157 KGTTSSRSFKHSRSAAV---------------------------------------TSEFHLVPSRSMNGQPLTCVVSHP  197 (218)
T ss_dssp             CCEEEEEEEECSSSEEE---------------------------------------EEEEEECCCGGGTTCEEEEEEECT
T ss_pred             cccccCceEecCCcEEE---------------------------------------EEEEEEeeCCHHhCeEEEEEEEeC
Confidence            76643222111100000                                       235666666667777777777776


Q ss_pred             CccCCceeEEEEe
Q psy14540        226 VASDNHSSNLRVN  238 (291)
Q Consensus       226 ~~~~~~~~~l~v~  238 (291)
                      .+..+..+.+.|.
T Consensus       198 ~g~~~~~~t~~v~  210 (218)
T 4frw_A          198 GLLQDQRITHILH  210 (218)
T ss_dssp             TCSSCEEEEEECC
T ss_pred             CCCeEEEEEEEEE
Confidence            6665555555443

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.90  E-value=2.7e-22  Score=143.81  Aligned_cols=110  Identities=18%  Similarity=0.330  Sum_probs=81.2

Q ss_pred             eeeecCCcEEEEEEecCCCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCcee
Q psy14540         12 QTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQT   89 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   89 (291)
                      ..+.+|+.++|.|.+.+.+.+  .+.|++++..+......         .....|.|.  +..|+|.|+|.+.+   ...
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~---------~~~~~l~i~--~~~d~G~Y~C~~~n---~~~   73 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---------GQKTEFKVD--SDDQWGEYSCVFLP---EPM   73 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---------CSEEEEEEC--GGGCCEEEEEEEES---TTS
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc---------CCcEEEEEe--chhhCeEEEEEEEC---CcC
Confidence            457899999999999876655  89999999877633211         112345565  68899999999997   234


Q ss_pred             eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeE
Q psy14540         90 HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLK  143 (291)
Q Consensus        90 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~  143 (291)
                      ..+.|.|...|...       ..+....+.+|+.+.|.|.+ .+.| .+.+.|++
T Consensus        74 ~~~~l~V~~~P~~~-------~~~~~~~~~~g~~~~l~C~~-~g~p~~~~i~W~~  120 (184)
T 3b5h_A           74 GTANIQLHGPPRVK-------AVKSSEHINEGETAMLVCKS-ESVPPVTDWAWYK  120 (184)
T ss_dssp             CEEEEEECCSCCCE-------ESCSEEEECTTSCEEEEEEC-CCSSCCCEEEEEE
T ss_pred             cEEEEEEecCCcee-------ecCCCcEEcCCCcEEEEEEE-CCCCCCCeEEEEE
Confidence            56677787655221       22344578899999999999 6888 79999999

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.90  E-value=7.7e-23  Score=153.60  Aligned_cols=195  Identities=16%  Similarity=0.232  Sum_probs=125.0

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE----------------CCeecCC----CeeEeceEEeeccceEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL----------------DGYPLAG----DRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~----------------~~~~~~~----~~~~~~~~~~~~~~~~~   62 (291)
                      +.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|                ++.....    .++...    ......+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~   77 (246)
T 4dzb_B            2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLIN----HASLTLS   77 (246)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEE----EEETTEE
T ss_pred             CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEE----ecCCCEE
Confidence            456778888999999999999999988888999998                2221111    122211    1123457


Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCC----ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVG----SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-  137 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-  137 (291)
                      +|.|.+++.+|+|.|.|.+.+..+    .....+.|.|......+.........+....+.+|+.++|.|.+....|.+ 
T Consensus        78 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~  157 (246)
T 4dzb_B           78 TLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  157 (246)
T ss_dssp             EEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCce
Confidence            899999999999999999986432    233455677765211111111222233334466799999999985434433 


Q ss_pred             eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-Ce
Q psy14540        138 TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SG  216 (291)
Q Consensus       138 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g  216 (291)
                      .+.|+++|..+.......         ...+.....++.|.|..                    .+.|.|.....+| +|
T Consensus       158 ~v~W~k~g~~l~~~~~~~---------~~~~~~~~~~~~g~~~~--------------------~s~l~i~~~~~~d~~g  208 (246)
T 4dzb_B          158 ELSWWVNGKEVHSGVCTD---------PQPLKEQPALNDSRYAL--------------------SSRLRVSATFWQNPRN  208 (246)
T ss_dssp             EEEEEETTEEECTTEEEC---------SSCEESSTTSTTCCEEE--------------------EEEEEEEHHHHTCTTC
T ss_pred             EEEEEECCEECCCCcccc---------cccccccccCCCCCEEE--------------------EEEEEECHHHhccCCC
Confidence            899999998886432110         00111222334566655                    2457788887777 99


Q ss_pred             eEEEEeeeCCccCC
Q psy14540        217 NYTCVASNTVASDN  230 (291)
Q Consensus       217 ~y~C~~~~~~~~~~  230 (291)
                      .|+|.|.|......
T Consensus       209 ~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          209 HFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEEEEEEECCBCTT
T ss_pred             eEEEEEEecCCCCc
Confidence            99999999875444

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.90  E-value=1.6e-23  Score=159.33  Aligned_cols=225  Identities=16%  Similarity=0.224  Sum_probs=124.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEec---CCCCCeeEEEECCeecCCCeeEe--------------ceEEe--eccceEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIAT---GNPTPHISWKLDGYPLAGDRFVM--------------GQYMS--LHGDVIS   62 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~---~~~~~~v~W~~~~~~~~~~~~~~--------------~~~~~--~~~~~~~   62 (291)
                      .|.+...+....+.+|++++|.|.+.   +.+.+.+.|++++..........              .+...  .......
T Consensus         5 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   84 (268)
T 3mj6_A            5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG   84 (268)
T ss_dssp             -------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred             ccccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence            35677888889999999999999987   56677899999654332111100              00000  0111226


Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee--CCCCCce
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT--KGDPPLT  138 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~  138 (291)
                      +|.|.+++.+|+|.|+|.+.+..+..  ...+.|.|.  +.          .+....+.+|+.++|.|.+.  .+.|.+.
T Consensus        85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~----------~p~~~~v~~G~~v~L~C~~~~~~~~p~~~  152 (268)
T 3mj6_A           85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PE----------EPRDLRVRVGDTTQMRCSIQSTEEKRVTK  152 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CC----------CCSEEEEETTCCEEECCBCEESSSSCCCE
T ss_pred             EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--cc----------CCCccccccCCcEEEEEEecCCCCCCccc
Confidence            69999999999999999998765443  344455554  21          22346788999999999983  5778899


Q ss_pred             eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE--EeccceEEEEeeeecCCCe
Q psy14540        139 ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR--VNEYTSSLSIATLSTGHSG  216 (291)
Q Consensus       139 ~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~~g  216 (291)
                      +.|++++........           .+....-.  .. .|.    ...+.......+.  .......|.|.++..+|+|
T Consensus       153 v~W~~~~~~~~~~~~-----------~~~~~~~~--~~-~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G  214 (268)
T 3mj6_A          153 VNWMFSSGSHTEEET-----------VLSYDSNM--RS-GKF----QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQG  214 (268)
T ss_dssp             EEEEEECTTCSSCEE-----------EEEEETTS--SS-CEE----ECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCE
T ss_pred             eEEEecCCCCCccee-----------EEEecCCC--Cc-ccc----ccccccccceEeeccCCCCeEEEEECcCChhhCe
Confidence            999995332211110           01110000  00 000    0000000011110  1123568999999999999


Q ss_pred             eEEEEeeeCCccCCceeEEEEe-cCCCCCCCCccc-ccCCce
Q psy14540        217 NYTCVASNTVASDNHSSNLRVN-VPPHIGPFTFGE-LMEGVR  256 (291)
Q Consensus       217 ~y~C~~~~~~~~~~~~~~l~v~-~~p~~~~~~~~~-~~~g~~  256 (291)
                      .|+|.|.|..+.....+.|.|. .+|.+...+... +.+|+.
T Consensus       215 ~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~p~~~~~~~~q~  256 (268)
T 3mj6_A          215 IYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQG  256 (268)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECC------------------
T ss_pred             EEEEEEEcCCceEEEEEEEEEEcCCCeeeeCCCCCCCCccee
Confidence            9999999988888888888884 455555544433 444443

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.90  E-value=2.8e-23  Score=163.05  Aligned_cols=194  Identities=25%  Similarity=0.390  Sum_probs=134.6

Q ss_pred             eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceee
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTH   90 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   90 (291)
                      ...+.+|+.+.|.|.+.+.|.+.+.|++++..+....... .  ........+|.|.+++..|+|.|+|.+.+..+....
T Consensus       132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~-~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  208 (334)
T 1ry7_B          132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG-G--IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ  208 (334)
T ss_dssp             EEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTT-C--CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEE
T ss_pred             eEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccccc-c--eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEE
Confidence            4578899999999999988889999999998776321100 0  001122346999999999999999999998888888


Q ss_pred             eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE----CCEeccCCCceEEeccCCceEEE
Q psy14540         91 SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK----NGLPILSDAEITIRSSGEYTSSL  166 (291)
Q Consensus        91 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~~~~~~~~~~~~~~~~~~~~~~l  166 (291)
                      .+.|.|...+..+  .......+....+.+|+.+.|.|.+ .+.|.+.+.|++    +|..+...........       
T Consensus       209 ~~~l~V~~~~~~~--p~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~-------  278 (334)
T 1ry7_B          209 TYTLDVLERSPHR--PILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVL-------  278 (334)
T ss_dssp             EEEEEEECCCCSS--CBCCTTCSCCEEEESSCCEEECCCC-BCSSCEEEEEEECCCGGGCSBCTTSSBCCCCC-------
T ss_pred             EEEEEEecCCCCC--CceEecCCCceEEeCCCCEEEEEEE-ecCCCCeEEEEECCcCCCccccCCCCeeEEEe-------
Confidence            8888888654221  1111123355678899999999999 689999999999    6665543322110000       


Q ss_pred             EEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       167 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                             .+.|.           ..      .......|.|.++..+|+|.|+|.|.|..|....++.|.|...|
T Consensus       279 -------~~~~~-----------~~------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  329 (334)
T 1ry7_B          279 -------KTAGA-----------NT------TDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE  329 (334)
T ss_dssp             -------CCSSC-----------SC------SCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSC
T ss_pred             -------ecCcc-----------cc------ccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECC
Confidence                   00000           00      00112468888888888899999999988888888888887654

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.90  E-value=1.6e-22  Score=157.22  Aligned_cols=183  Identities=14%  Similarity=0.149  Sum_probs=116.0

Q ss_pred             CCcceeecc-eeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFI-QQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~-~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +|.+...+. ...+.+|+.+.|.|.+. +.|.+.+.|++++..+.. .++...   .......++|.|.+++.+|+|.|+
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~  182 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMH---IDRNTGIIEMFMEKLQDEDEGTYT  182 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEE---EETTTTEEEEEESCCCGGGCEEEE
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEE---EccCCCEEEEEEccCCcccCEeEE
Confidence            566655554 78899999999999999 788999999999998873 332221   122244577999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCCC-----------C---cccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeE
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPGQ-----------P---QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLK  143 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~~-----------~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~  143 (291)
                      |.+.+...  .....+.+......           +   ....... .+....+.+|+.+.|.|.+ .+.|.+ .+.|++
T Consensus       183 C~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~  258 (312)
T 2y23_A          183 FQLQDGKA--TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV-EYLSWEVTGECNVLLKCKV-ANIKKETHIVWYK  258 (312)
T ss_dssp             EEEESSSC--EEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEE-EEEEEEEETTTEEEEEEEE-ESCCSSCEEEEEE
T ss_pred             EEEEeCCc--eEEEEEEEcchhhhhhcccccccccchhhccCCcee-ecceEEEeCCCEEEEEEEE-cCCCCCCEEEEee
Confidence            99975333  33333333110000           0   0000000 1112578899999999999 577777 999999


Q ss_pred             CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        144 NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      ++..+....+....   .+...|.|.++..+|.|.|+|.|.|..|.....+
T Consensus       259 ~g~~~~~~~~~~~~---~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~  306 (312)
T 2y23_A          259 DEREISVDEKHDFK---DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL  306 (312)
T ss_dssp             TTEEEEEECCC-------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEE
T ss_pred             CCEECCCCCcEEEE---CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeee
Confidence            99988654443322   1234566666666666666665555555444433

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.90  E-value=5.2e-23  Score=160.06  Aligned_cols=186  Identities=18%  Similarity=0.251  Sum_probs=128.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.+...+....+..|+.+.+.|.+. +.|.+.+.|++++..+......... ........+.|.|.+....|.|.|+|.
T Consensus       117 ~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~s~l~i~~~~~~d~g~Y~C~  195 (313)
T 4fqp_A          117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGF-LSGTVTVTSLWILVPSSQVDGKNVTCK  195 (313)
T ss_dssp             CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECS-STTCEEEEEEEEECCCGGGTTCEEEEE
T ss_pred             CCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeee-cccccccceeeeecccccccCeeEEEE
Confidence            46666666667788899999999876 4788999999998766522111100 000011235688999999999999999


Q ss_pred             EeCCCCceeee--eeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEe
Q psy14540         81 ATNRVGSQTHS--ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIR  157 (291)
Q Consensus        81 ~~~~~~~~~~~--~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~  157 (291)
                      +.+..+.....  +.|.|..+|      ...........+.+|+.++|.|.+ .|.|.| .+.|++++..+......   
T Consensus       196 a~n~~~~~~~~~~~~l~V~~~P------~v~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~~v~W~~~~~~l~~~~~~---  265 (313)
T 4fqp_A          196 VEHESFEKPQLLTVNLTVYYPP------EVSISGYDNNWYLGQNEATLTCDA-RSNPEPTGYNWSTTMGPLPPFAVA---  265 (313)
T ss_dssp             EECTTSSSCEEEEEECCBCEEE------EEEEECCCSCEETTCCCEEEEEEE-EEESCCCEEEEEETTBSCCTTEEE---
T ss_pred             EEccCcCccceeeeecccccCC------ccccccccceeecCCCeEEEEEEe-cCCCCCcEEEEEECCEECCCceEE---
Confidence            99876654433  344443322      111223334556788999999999 688888 69999999877432100   


Q ss_pred             ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                                                                 ...+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus       266 -------------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  302 (313)
T 4fqp_A          266 -------------------------------------------QGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV  302 (313)
T ss_dssp             -------------------------------------------ETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEE
T ss_pred             -------------------------------------------eCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEE
Confidence                                                       0235777888888888888888888888888888888


Q ss_pred             ecCC
Q psy14540        238 NVPP  241 (291)
Q Consensus       238 ~~~p  241 (291)
                      .++|
T Consensus       303 ~~~P  306 (313)
T 4fqp_A          303 KEGP  306 (313)
T ss_dssp             ECCC
T ss_pred             EeCC
Confidence            7654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.90  E-value=3.2e-23  Score=147.25  Aligned_cols=154  Identities=16%  Similarity=0.264  Sum_probs=101.6

Q ss_pred             eeeeecCCcEEEEEEecC--CCCCeeEEEECCeecC---C--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540         11 QQTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLA---G--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~---~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      .+.+.+|++++|.|....  .+.+.|.|+|++..+.   .  .......+.....+  .+|.|.+++.+|+|.|+|.+.+
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~--gsL~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN--GDLKIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT--SCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCC--CcEEEcccccccCEEEEEEEEe
Confidence            456889999999995433  4567899999986542   0  00000000111112  2399999999999999999998


Q ss_pred             CCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCC
Q psy14540         84 RVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE  161 (291)
Q Consensus        84 ~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~  161 (291)
                      ..+..  ...+.|.|...+..|            .....+..+.|.|.+ .+.|.+.+.|+++|..+....+        
T Consensus        83 ~~g~~~~~~~~~l~V~~~~~~p------------~i~~~~~~v~L~C~~-~g~p~p~i~W~~~g~~l~~~~~--------  141 (176)
T 1hng_A           83 TNGTRILNKALDLRILEMVSKP------------MIYWECSNATLTCEV-LEGTDVELKLYQGKEHLRSLRQ--------  141 (176)
T ss_dssp             TTCCEEEEEEEEEEEECCCCCC------------EEEEETTTTEEEEEC-SSCSSCEEEEEETTEEEEEESS--------
T ss_pred             CCCCEEEEEEEEEEEeCCCCCC------------EEEecCCcEEEEEEe-cCCCCcEEEEEECCEECCCCCc--------
Confidence            88875  666778887654322            111234569999998 6888899999999988754322        


Q ss_pred             ceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        162 YTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       162 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                          +.+..+..+|.|.|+|.|.|..|...
T Consensus       142 ----~~i~~~~~~d~G~Y~C~a~N~~g~~~  167 (176)
T 1hng_A          142 ----KTMSYQWTNLRAPFKCKAVNRVSQES  167 (176)
T ss_dssp             ----SEEEEECSCCSSCEEEEEEETTEEEE
T ss_pred             ----EEEEEEEccCCeEEEEEEEecCCCce
Confidence                23334556666666666666665443

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.90  E-value=1.1e-22  Score=158.44  Aligned_cols=190  Identities=21%  Similarity=0.312  Sum_probs=122.8

Q ss_pred             eeeecCCcEEEEEEe------cCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe-CC
Q psy14540         12 QTLQPGPPVSLKCIA------TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT-NR   84 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~-~~   84 (291)
                      ..+.+|+++.|.|.+      .+.|.+.+.|++++..+.......   ....    ..|.|.+++.+|+|.|+|.+. +.
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~---~~~~----~~L~i~~v~~~d~G~Y~C~a~~n~  185 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF---SGVK----DRLIVMNVAEKHRGNYTCHASYTY  185 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSE---EEET----TEEEESSCCGGGCEEEEEEEEEEE
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceE---eecC----ceEEEEeceehhCcEEEEEEEcCC
Confidence            568899999999998      678889999999999886322111   1111    258999999999999999999 66


Q ss_pred             CCce---eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCC
Q psy14540         85 VGSQ---THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE  161 (291)
Q Consensus        85 ~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~  161 (291)
                      .|..   ...+.+.+....... .+...........+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..........   
T Consensus       186 ~g~~~~~~~~~~~~~~~~~~~~-~P~~~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~i~~~~~~~~~~---  260 (315)
T 1itb_B          186 LGKQYPITRVIEFITLEENKPT-RPVIVSPANETMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDDPVLGED---  260 (315)
T ss_dssp             TTEEEEEEEEEEEEEECCCCCC-CCEECSCCSEEEECCSSSCEEEEEEE-EECTTSEEEEEETTEECCTTCSSEEEE---
T ss_pred             CCcEEEEEEEEEEEEecCCCCC-CCEEecCCCCcEEEeCCCcEEEEEEE-ecCCCCeeEEEECCEECCccccccccc---
Confidence            6654   334444444322111 11111122223578899999999999 689999999999999887654322110   


Q ss_pred             ceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-CeeEEEEeeeCCccCCceeEEEEe
Q psy14540        162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       162 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                         ...+..  ..+....                    .....|.|.++..+| +|.|+|.|.|..|.....+.|.|.
T Consensus       261 ---~~~~~~--~~~~~~~--------------------~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          261 ---YYSVEN--PANKRRS--------------------TLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             ---EEEECC--SSCGGGE--------------------EEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             ---ceeeec--cCCCcee--------------------EEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence               000000  0000000                    013457777777777 777777777777777777777664

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.90  E-value=1.7e-22  Score=148.32  Aligned_cols=192  Identities=17%  Similarity=0.192  Sum_probs=119.5

Q ss_pred             ecceeeeecC--CcEEEEEEecCCCCCeeEEEEC---CeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          8 KFIQQTLQPG--PPVSLKCIATGNPTPHISWKLD---GYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         8 ~~~~~~v~~g--~~v~l~C~~~~~~~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      .|..+.+.+|  ++++|.|.+.+ |.+.+.|++.   +..+......    .....   ..|.|.+++.+|+|.|+|.+.
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~----~~~~~---~~l~I~~v~~~D~G~Y~C~a~   84 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRI----SWDSK---KGFTIPSYMISYAGMVFCEAK   84 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSC----EEETT---TEEEEEGGGTTTCSEEEEEEC
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcc----cccCC---ccEEEccCChhcCceEEEEEE
Confidence            3467889999  99999999976 6689999884   6555532110    00111   238899999999999999998


Q ss_pred             CCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEecc
Q psy14540         83 NRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        83 ~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      +..+.. +..+.+.|.... .   ............+.+|+.++|.|.+. +.|  .+.+.|++++..+..... .    
T Consensus        85 n~~~~~~s~~~~l~v~~~~-~---p~~~~~~~~~~~v~~G~~v~L~C~~~-g~p~~~~~i~W~~~g~~~~~~~~-~----  154 (213)
T 2x1w_L           85 INDESYQSIMYIVVVVGYR-I---YDVVLSPSHGIELSVGEKLVLNCTAR-TELNVGIDFNWEYPSSKHQHKKL-V----  154 (213)
T ss_dssp             ----CEECCCEEEEECBCC-E---EEEEEESCSCEEEETTCCEEEEEEEE-ECTTBCCEEEEECSCSSCCSEEE-E----
T ss_pred             ECCeeEEEEEEEEEEeCCc-c---cceEEcCCCCeEEcCCCCEEEEEEEE-CCCCCceEEEEEecCCccceEEE-e----
Confidence            743332 222555554311 1   11222333445788999999999994 533  457999998876432100 0    


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV  239 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~  239 (291)
                            ......... ...+                    .....|.|.++..+|+|.|+|.|.|..|..+..+.|.|..
T Consensus       155 ------~~~~~~~~~-~~~~--------------------~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~  207 (213)
T 2x1w_L          155 ------NRDLKTQSG-SEMK--------------------KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE  207 (213)
T ss_dssp             ------EEEECCCSS-CSCE--------------------EEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ------ccccccccC-ccce--------------------eeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence                  000000000 0000                    0134789999999999999999999998888999999988


Q ss_pred             CCCCC
Q psy14540        240 PPHIG  244 (291)
Q Consensus       240 ~p~~~  244 (291)
                      +|.|.
T Consensus       208 ~p~i~  212 (213)
T 2x1w_L          208 DPIEG  212 (213)
T ss_dssp             -----
T ss_pred             ccccC
Confidence            87653

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.90  E-value=1.7e-22  Score=158.23  Aligned_cols=135  Identities=18%  Similarity=0.163  Sum_probs=97.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+.......   ...    ...|.|.+++.+|+|.|+|.
T Consensus       128 ~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~---~~~----~~~L~I~~v~~~D~G~Y~C~  200 (329)
T 3oq3_B          128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY---SQS----GQNLIIHNPELEDSGRYDCY  200 (329)
T ss_dssp             CCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSE---EEE----TTEEEECSCCGGGCEEEEEE
T ss_pred             CCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceE---ecC----CCEEEEeecChhhCEEEEEE
Confidence            45555555555678899999999999988 89999999999885221111   111    14589999999999999999


Q ss_pred             EeCC--CCceee----eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC---Cc-eeEEeECCEec
Q psy14540         81 ATNR--VGSQTH----SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP---PL-TISWLKNGLPI  148 (291)
Q Consensus        81 ~~~~--~~~~~~----~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~-~~~W~~~~~~~  148 (291)
                      +.+.  .+....    .+.|.|...+....   ... .+....+.+|+.+.|.|.+ .+.|   .+ .+.|++++..+
T Consensus       201 a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~---~~~-~~~~~~v~~G~~~~l~C~~-~g~p~~~~~i~v~W~~~g~~i  273 (329)
T 3oq3_B          201 VHYDDVRIKNDIVVSRCKILTVIPSQDHRF---KLI-LDPKINVTIGEPANITCTA-VSTSLLVDDVLIDWENPSGWI  273 (329)
T ss_dssp             EEECCTTSSSCEEEEEEEEEEEECCCCCCE---EEE-CCSEEEECTTSCEEEEEEE-EETTCCTTCCEEEEECTTSCB
T ss_pred             EEecccCCCceeEEEeeEEEEEECCCCCCC---cee-cCCeeEEecCCCEEEEEEE-EECCCCCCCcEEEEEECCeee
Confidence            9976  444332    36677776553221   111 3455788899999999999 4665   66 88999998874

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.90  E-value=1.2e-23  Score=150.80  Aligned_cols=166  Identities=16%  Similarity=0.211  Sum_probs=114.5

Q ss_pred             eeeeecCCcEEEEEEecCCCCCeeEEEECCee--cC--CCeeE------eceEEeec---cceEEEEEEeecCCCCCeEE
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYP--LA--GDRFV------MGQYMSLH---GDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~~--~~~~~------~~~~~~~~---~~~~~~l~i~~~~~~d~G~y   77 (291)
                      .+.+.+|++++|.|.+.+.+.+.+.|++++..  +.  .....      ..+.....   ..+.++|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            45789999999999998888889999998752  21  00000      00000010   22346699999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe
Q psy14540         78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR  157 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  157 (291)
                      +|.+.+..    ..+.+.|....          . +....+.+|+.++|.|.+ .+.|.+.+.|++++..+..       
T Consensus        84 ~C~~~~~~----~~~~l~V~~~~----------~-~~~~~v~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~-------  140 (184)
T 2ny1_B           84 ICEVEDQK----EEVQLLVFGLT----------A-NSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQ-------  140 (184)
T ss_dssp             EEEETTEE----EEEEEEEEEEE----------E-SSCSEEETTCCEEEEEEC-CTTCCCEEEEECTTSCEEE-------
T ss_pred             EEEEEcCC----CcEEEEEEEec----------C-CCCceeecCCCEEEEEEc-CCCCCCEEEEEeCCCcccc-------
Confidence            99998653    34556665321          1 223467899999999999 5779999999998754310       


Q ss_pred             ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                                                                 ....|.|.++..+|+|.|+|.|.|..+..+..+.|.|
T Consensus       141 -------------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V  177 (184)
T 2ny1_B          141 -------------------------------------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV  177 (184)
T ss_dssp             -------------------------------------------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             -------------------------------------------CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEE
Confidence                                                       1345777777777778888888777777777777777


Q ss_pred             ecCCC
Q psy14540        238 NVPPH  242 (291)
Q Consensus       238 ~~~p~  242 (291)
                      ...|.
T Consensus       178 ~~~p~  182 (184)
T 2ny1_B          178 LAFQK  182 (184)
T ss_dssp             ECCCC
T ss_pred             EecCC
Confidence            66553

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.90  E-value=2.9e-23  Score=153.02  Aligned_cols=144  Identities=20%  Similarity=0.321  Sum_probs=94.4

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCC-CCCeeEEEECC--eecC-----CC----eeE---eceEEeeccceEEEEEEe
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDG--YPLA-----GD----RFV---MGQYMSLHGDVISHVNIS   67 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~--~~~~-----~~----~~~---~~~~~~~~~~~~~~l~i~   67 (291)
                      |.+...| ...+.+|++++|.|.+.+. +.+.+.|+|..  ....     ..    ...   ..+.........++|.|.
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   80 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS   80 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence            5677777 8899999999999999987 88899999832  1110     00    000   001111113345779999


Q ss_pred             ecCCCCCeEEEEEEeCCCC-----ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEE
Q psy14540         68 SVRVEDSGIYQCTATNRVG-----SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISW  141 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W  141 (291)
                      +++.+|+|.|+|.+.+..+     .....+.|.|...+..++  ... ..+....+..|+.++|.|.+..+.|.+ .+.|
T Consensus        81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~~~-~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W  157 (218)
T 3s96_B           81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTP--TLT-VFPPSSEELKENKATLVCLISNFSPSGVTVAW  157 (218)
T ss_dssp             SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCC--EEE-EECCCHHHHHTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCc--eEE-eeCCCcccccCCcEEEEEEECcccCCCeEEEE
Confidence            9999999999999987665     334456778875442211  111 111223344678999999996446766 8999


Q ss_pred             eECCEeccC
Q psy14540        142 LKNGLPILS  150 (291)
Q Consensus       142 ~~~~~~~~~  150 (291)
                      +++|..+..
T Consensus       158 ~k~g~~l~~  166 (218)
T 3s96_B          158 KANGTPITQ  166 (218)
T ss_dssp             EETTEEC--
T ss_pred             EECCEECcC
Confidence            999998864

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.89  E-value=1.9e-21  Score=160.81  Aligned_cols=184  Identities=20%  Similarity=0.297  Sum_probs=106.5

Q ss_pred             eecceeeeecCCcEEEEEEecCCCC----CeeEEEEC--CeecC------C-Ce--e---EeceEEee--ccceEEEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNPT----PHISWKLD--GYPLA------G-DR--F---VMGQYMSL--HGDVISHVNI   66 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~--~~~~~------~-~~--~---~~~~~~~~--~~~~~~~l~i   66 (291)
                      ..|..+.+.+|++++|.|.+.+.+.    ..+.||+.  ++.+.      . ..  .   ...+....  .....++|.|
T Consensus         5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (512)
T 1zvo_C            5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNL   84 (512)
T ss_pred             ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEE
Confidence            3467788999999999999986432    67999985  32110      0 00  0   00111111  1234578999


Q ss_pred             eecCCCCCeEEEEEEeCCCC-------------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC
Q psy14540         67 SSVRVEDSGIYQCTATNRVG-------------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG  133 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~~~-------------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  133 (291)
                      .+++.+|+|.|.|.+.+..+             .....+.|.|...+..++ .... ..+.......|+.++|.|.+..+
T Consensus        85 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P-~i~~-~~~~~~~~~~~~~v~L~C~~~g~  162 (512)
T 1zvo_C           85 RSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAP-DVFP-IISGCRHPKDNSPVVLACLITGY  162 (512)
T ss_pred             CcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCC-eEEe-ccCCcccccCCCeEEEEEEEEee
Confidence            99999999999999986532             122445677764321111 1111 11111101246899999999655


Q ss_pred             CCCc-eeEEeECCEeccCC-CceEEeccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        134 DPPL-TISWLKNGLPILSD-AEITIRSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       134 ~p~~-~~~W~~~~~~~~~~-~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      .|.+ .+.|++++...... ........+.+  ...|.|.....+ .|.|+|.|.|..+.....
T Consensus       163 ~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~  225 (512)
T 1zvo_C          163 HPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKE  225 (512)
T ss_pred             ecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEE
Confidence            5765 89999965432100 00011111211  234677666666 888999998887765443

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.89  E-value=9.5e-23  Score=149.49  Aligned_cols=184  Identities=18%  Similarity=0.336  Sum_probs=117.6

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-------------CCeeEeceEEeeccceEEEEEEe
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-------------GDRFVMGQYMSLHGDVISHVNIS   67 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~   67 (291)
                      |.+...+ ...+.+|++++|.|.+.  +.+.+.|+++  +..+.             ..++..     ......++|.|.
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~   73 (211)
T 3tv3_L            2 SALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSG-----SKSGNTASLTVS   73 (211)
T ss_dssp             -CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEE-----EEETTEEEEEEE
T ss_pred             ceEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEE-----EccCCEEEEEEC
Confidence            4566666 88999999999999998  7889999994  22211             112211     113345789999


Q ss_pred             ecCCCCCeEEEEEEeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeEC
Q psy14540         68 SVRVEDSGIYQCTATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKN  144 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~  144 (291)
                      +++.+|+|.|+|.+.+..+  .....+.|.|...+..++  ... ..+....+.+|+.++|.|.+.+..| .+.+.|+++
T Consensus        74 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P--~v~-~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~  150 (211)
T 3tv3_L           74 GLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAP--SVT-LFPPSSEELQANKATLVCLISDFYPGAVTVAWKAD  150 (211)
T ss_dssp             SCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCC--EEE-EECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEET
T ss_pred             CCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCC--eeE-ecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEEC
Confidence            9999999999999998776  355566777764321111  111 1122223347999999999953333 689999999


Q ss_pred             CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      |..+......              ........|.|..                    ...|.|..+..+|+|.|+|.|.|
T Consensus       151 g~~l~~~~~~--------------~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~g~Y~C~v~~  196 (211)
T 3tv3_L          151 SSPVKAGVET--------------TTPSKQSNNKYAA--------------------SSYLSLTPEQWKSHRSYSCQVTH  196 (211)
T ss_dssp             TEEECTTEEE--------------CCCEECTTSSEEE--------------------EEEEEECHHHHHHSSCEEEEEEE
T ss_pred             CeecCCCccc--------------CCceECCCCCEEE--------------------EEEEEEcHHHhCCCCeEEEEEEE
Confidence            9887542110              0011122334432                    24577777777788888888888


Q ss_pred             CCccCCc
Q psy14540        225 TVASDNH  231 (291)
Q Consensus       225 ~~~~~~~  231 (291)
                      ..+...+
T Consensus       197 ~~~~~~~  203 (211)
T 3tv3_L          197 EGSTVEK  203 (211)
T ss_dssp             TTEEEEE
T ss_pred             CCCCEEe
Confidence            7654433

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.89  E-value=2.3e-22  Score=147.52  Aligned_cols=187  Identities=18%  Similarity=0.283  Sum_probs=113.2

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCC---CCeeEEEECC--eecC-----CCee---EeceEEeeccceEEEEEEeecC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDG--YPLA-----GDRF---VMGQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~--~~~~-----~~~~---~~~~~~~~~~~~~~~l~i~~~~   70 (291)
                      .++. |....+.+|++++|.|.+.+.+   .+.+.|++++  ..+.     ....   ...+.........++|.|.+++
T Consensus         3 ~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   81 (212)
T 1q0x_L            3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ   81 (212)
T ss_dssp             CEEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCC
Confidence            3455 8888999999999999998866   4789999853  2210     0000   0011111112344679999999


Q ss_pred             CCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEec
Q psy14540         71 VEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPI  148 (291)
Q Consensus        71 ~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~  148 (291)
                      .+|+|.|.|.+.+..+. ......+.|...+..++  ......+ ...+..|+.++|.|.+.+..|.+ .+.|+++|..+
T Consensus        82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P--~v~~~~~-~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l  158 (212)
T 1q0x_L           82 TEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSP--TVTLFPP-SSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPV  158 (212)
T ss_dssp             GGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCC--EEEEECC-CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             ccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCC--eeEEeCC-CHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeC
Confidence            99999999999876543 22344566643321111  1111111 12234689999999995445554 89999999887


Q ss_pred             cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540        149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS  228 (291)
Q Consensus       149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  228 (291)
                      ......              ........|.|..                    .+.|.|..+..+|+|.|+|.|.|....
T Consensus       159 ~~~~~~--------------~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (212)
T 1q0x_L          159 TAGMET--------------TQPSKQSNNKYMA--------------------SSYLTLTARAWERHSSYSCQVTHEGHS  204 (212)
T ss_dssp             CTTEEE--------------CCCEECTTSCEEE--------------------EEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred             CCCeec--------------CCceeCCCCCEEE--------------------EEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence            543110              0001122233332                    235677777777888888888776543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.89  E-value=9.3e-23  Score=146.27  Aligned_cols=151  Identities=21%  Similarity=0.341  Sum_probs=100.2

Q ss_pred             eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEee-cCCCCCeEEEEEEeCCCCceee
Q psy14540         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISS-VRVEDSGIYQCTATNRVGSQTH   90 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~   90 (291)
                      ..+.+|+++.|.|.+.+ + +.+.|+|+|..+....           +  .+|.|.+ ++.+|+|.|+|.+.+..|....
T Consensus         9 ~v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~~-----------~--~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~   73 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-D-ENLKWEKNGQELPQKH-----------D--KHLVLQDFSEVEDSGYYVCYTPASNKNTYL   73 (186)
T ss_dssp             EEEEETTEEEEECSSCC-C-TTCEEEETTEEECSCC-----------C--SEEEEESCCTTTSCEEEEEECSSCCCCCCE
T ss_pred             EEEeCCcEEEEEEeCCC-C-CceEEEECCEECCCCC-----------C--CEEEECCCCccccCEEEEEEEEeCCCcEEE
Confidence            34578999999999886 3 3499999999877421           0  1489999 9999999999999988777555


Q ss_pred             eeeEEEEcCCCCCccc-------------ce--eccCCcc---eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC
Q psy14540         91 SADMRVYDAPGQPQDV-------------KL--VTSNSRS---IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA  152 (291)
Q Consensus        91 ~~~l~v~~~~~~~~~~-------------~~--~~~~~~~---~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~  152 (291)
                      ...+.|..........             ..  .......   ..+.+|+.+.|.|.+    |.+.+.|+++|..+....
T Consensus        74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~----p~p~i~W~k~g~~i~~~~  149 (186)
T 1jbj_A           74 YLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL----TDKTIKWLKDGSIISPLN  149 (186)
T ss_dssp             EECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS----SCSCEEEEETTEECCCSS
T ss_pred             EEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC----CCCeEEEEECCEECcccC
Confidence            5555444322111000             00  0000001   234499999999987    778999999999876332


Q ss_pred             ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      .        ....|.|..+..+|.|.|+|.|.|..|.
T Consensus       150 ~--------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          150 A--------TKNTWNLGNNAKDPRGTYQCQGAKETSN  178 (186)
T ss_dssp             C--------CSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred             C--------CcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence            1        2334666666666666666666665543

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.89  E-value=5.5e-22  Score=150.49  Aligned_cols=216  Identities=15%  Similarity=0.192  Sum_probs=109.6

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      +.+.|....|.+|+++.|.|.+.......+.|.-.  +..+.           ..+.....+.|.+++.+  |.|+|++.
T Consensus         2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~-----------~~g~~~~~~~l~~v~~~--~~y~C~~~   68 (291)
T 1mq8_A            2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELL-----------LPGNNRKVYELSNVQED--SQPMCYSN   68 (291)
T ss_dssp             EEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCC-----------CSCSSEEEEEEESCCSC--CCCEEEEE
T ss_pred             eEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccc-----------cCCCceEEEEEEecccC--CeEEEEEE
Confidence            45678888999999999999997433334888531  11110           01112234678887743  56999997


Q ss_pred             CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc--eeEEeECCEeccCCCceEEeccC
Q psy14540         83 NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL--TISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      .........+.+.|..+|..+...      .....+.+|+.++|.|.+.++.|..  .|+|+++++.+.....    ...
T Consensus        69 ~~~~~~~~~v~l~V~~~P~~v~I~------~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~----~~~  138 (291)
T 1mq8_A           69 CPDGQSTAKTFLTVYWTPERVELA------PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA----VGE  138 (291)
T ss_dssp             CSSCEEEEECEEEECBCCSCCCBC------CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC----CBT
T ss_pred             cCCccEEEEEEEEEecCCCCCEEe------cCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC----CCC
Confidence            554456777788988877543211      1113477899999999997777765  5899999977642210    000


Q ss_pred             CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc--------cCCce
Q psy14540        161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA--------SDNHS  232 (291)
Q Consensus       161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--------~~~~~  232 (291)
                      .                                       ...++.+...+.+|++.|+|+|.+..+        ..+..
T Consensus       139 ~---------------------------------------~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~  179 (291)
T 1mq8_A          139 P---------------------------------------AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAP  179 (291)
T ss_dssp             T---------------------------------------EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCC
T ss_pred             C---------------------------------------ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccc
Confidence            0                                       022355555666777788888887543        25677


Q ss_pred             eEEEEecCCCCCC--CCcccccCCceEEEEEEeecCC-CCc--eEEEEECCEEccC
Q psy14540        233 SNLRVNVPPHIGP--FTFGELMEGVRTQVACVVQSGD-LPL--SLQWYKNGLAISQ  283 (291)
Q Consensus       233 ~~l~v~~~p~~~~--~~~~~~~~g~~v~l~C~~~~~~-p~~--~v~W~~~~~~l~~  283 (291)
                      ..|.|+++|...+  .....+.+|+.++|+|.+ .|. |++  .+.|++||+.+..
T Consensus       180 ~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~-~g~~P~~~~~v~w~~~g~~l~~  234 (291)
T 1mq8_A          180 YQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL-DGLFPVSEAQVHLALGDQRLNP  234 (291)
T ss_dssp             EECBC---------------------------------------------------
T ss_pred             eEEEEEecCCCCceecCCcCccCCCeEEEEEEc-CCCCCCcccEEEEEECCEecCc
Confidence            7888888753321  111248899999999999 655 443  6999999998863

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=1.9e-21  Score=144.93  Aligned_cols=204  Identities=16%  Similarity=0.163  Sum_probs=119.8

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .+|.|...|.. .+.+|++|+|.|.+.+ +...+.|+|++..+......     .........|.|.+++.+|+|.|+|.
T Consensus         6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~-----~~~~~~~~~L~I~~v~~~DsG~Y~C~   78 (242)
T 1p6f_A            6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK-----PPERINKVKFYIPDMNSRMAGQYSCI   78 (242)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS-----SCTTCCEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccccccc-----ccCCcceeEEEecCCCcccCeEEEEE
Confidence            36888888877 8999999999999864 45689999999765410000     01112335699999999999999999


Q ss_pred             EeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540         81 ATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        81 ~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      +.+..+  ..+..+.|.|......|  ...  ..+ ...+.+|+.++|.|.+ .+ +.+.+.|+|+|..+...    .. 
T Consensus        79 ~~~~~~~s~~S~~~~L~V~~~~~~P--~i~--~~p-~~~v~~G~~vtL~C~~-~~-~~~~~~w~k~g~~~~~~----~~-  146 (242)
T 1p6f_A           79 YRVGELWSEPSNLLDLVVTEMYDTP--TLS--VHP-GPEVISGEKVTFYCRL-DT-ATSMFLLLKEGRSSHVQ----RG-  146 (242)
T ss_dssp             EEETTEECCCCCCEEEEEECCSCCC--EEE--EES-CSEEETTCEEEEEEEC-TT-SCSEEEEEECSSSCEEE----EE-
T ss_pred             EecCCccccCCcceEEEeecccCCC--ceE--ccC-CCccCCCCcEEEEEec-CC-CCCEEEEEECCCccCcc----cc-
Confidence            976433  23455677776543222  111  112 2457899999999998 34 34699999998765320    00 


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC---ccCCceeEE
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV---ASDNHSSNL  235 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~---~~~~~~~~l  235 (291)
                      ...                                       ....|.|.++..+|+|.|+|.+.|..   ...+..+.|
T Consensus       147 ~~~---------------------------------------~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l  187 (242)
T 1p6f_A          147 YGK---------------------------------------VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKL  187 (242)
T ss_dssp             ECS---------------------------------------SEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEE
T ss_pred             CCC---------------------------------------ceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEE
Confidence            001                                       13456666777777777777776642   466777778


Q ss_pred             EEecC---CCCCCCCcccccCCceEEEEEE
Q psy14540        236 RVNVP---PHIGPFTFGELMEGVRTQVACV  262 (291)
Q Consensus       236 ~v~~~---p~~~~~~~~~~~~g~~v~l~C~  262 (291)
                      .|..+   |.+.+........+..+.|.+.
T Consensus       188 ~V~~~~~~P~l~~~~~~~~~~~~~~~~~~~  217 (242)
T 1p6f_A          188 LVTGDIENTSLAPEDPTFPADTWGTYLLTT  217 (242)
T ss_dssp             EEEC--------------------------
T ss_pred             EEeccCCCCcccCcCCCccccccccccccc
Confidence            87753   4444333322333444555444

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.89  E-value=1.8e-23  Score=157.20  Aligned_cols=204  Identities=13%  Similarity=0.167  Sum_probs=118.8

Q ss_pred             Ccce-eecceeeeecCCcEEEEEEecCCCCCe-----eEEEECCeecCCCeeEe----ceEEe----------eccceEE
Q psy14540          3 PQLI-YKFIQQTLQPGPPVSLKCIATGNPTPH-----ISWKLDGYPLAGDRFVM----GQYMS----------LHGDVIS   62 (291)
Q Consensus         3 p~~~-~~~~~~~v~~g~~v~l~C~~~~~~~~~-----v~W~~~~~~~~~~~~~~----~~~~~----------~~~~~~~   62 (291)
                      |.+. ..|..+.+.+|++++|.|.+.+.|.+.     +.|++++..........    .....          ......+
T Consensus         3 ~~v~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (248)
T 3pv7_A            3 LKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDA   82 (248)
T ss_dssp             EEEECSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBC
T ss_pred             eEEEEeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcE
Confidence            4443 455667899999999999997765554     99999643221100000    00000          0112235


Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEE
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISW  141 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W  141 (291)
                      +|.|.+++.+|+|.|+|.+.+..+.....+.|.|...|..     .. . +. ..+..|+.+.|.|.+..++|.+ .+.|
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v-----~~-~-~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W  154 (248)
T 3pv7_A           83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPAS-----RL-L-LD-QVGMKENEDKYMCESSGFYPEAINITW  154 (248)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEE-----EE-E-CC---------CEEEEEEEEEBSSCCEEEE
T ss_pred             EEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCce-----EE-e-cC-CccccCCCcEEEEEEccEECCCeEEEE
Confidence            6999999999999999999987777777888888875421     11 1 11 2344678889999995448888 9999


Q ss_pred             eECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEE
Q psy14540        142 LKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV  221 (291)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~  221 (291)
                      ++++..+......  ..   .   ...........|.|.+                    ...|.+.....+|+|.|+|.
T Consensus       155 ~k~g~~l~~~~~~--~~---~---~~~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~g~YtC~  206 (248)
T 3pv7_A          155 EKQTQKFPHPIEI--SE---D---VITGPTIKNMDGTFNV--------------------TSCLKLNSSQEDPGTVYQCV  206 (248)
T ss_dssp             EEECSSSCSCEEE--CT---T---EEEEEEEECTTSCEEE--------------------EEEEECC--CCCTTCEEEEE
T ss_pred             EECCccCCCcccc--cc---c---eeecccEECCCCCEEE--------------------EEEEEEcCccccCCCEEEEE
Confidence            9999766432110  00   0   0001111223355544                    34677888888999999999


Q ss_pred             eeeCCccCC--ceeEEEEecCCCC
Q psy14540        222 ASNTVASDN--HSSNLRVNVPPHI  243 (291)
Q Consensus       222 ~~~~~~~~~--~~~~l~v~~~p~~  243 (291)
                      |.|..+...  ..+.|.| ..|.+
T Consensus       207 a~n~~~~~~~~~~v~l~V-~~p~~  229 (248)
T 3pv7_A          207 VRHASLHTPLRSNFTLTA-ARHSL  229 (248)
T ss_dssp             EECTTCSSCEEEEECC--------
T ss_pred             EECCCCCCCcEEEEEEEE-cCCCC
Confidence            999886544  4555555 33444

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.89  E-value=4.4e-22  Score=150.20  Aligned_cols=141  Identities=18%  Similarity=0.311  Sum_probs=93.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCC-----CCeeEEEECC--eecC-------------CCeeEeceEEeeccceE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDG--YPLA-------------GDRFVMGQYMSLHGDVI   61 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~   61 (291)
                      +|.+...|....+.+|++++|.|.+.+.+     .+.+.|++++  ..+.             ..++..     ......
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~  112 (254)
T 2c1o_A           38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTG-----SGSGTD  112 (254)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EEETTE
T ss_pred             ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEE-----ecCCCE
Confidence            46677778889999999999999998866     4889999843  2211             112211     123345


Q ss_pred             EEEEEeecCCCCCeEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-cee
Q psy14540         62 SHVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTI  139 (291)
Q Consensus        62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~  139 (291)
                      ++|.|.+++.+|+|.|+|.+.+..+.. .....+.|......|   ......+. .....|+.++|.|.+.+..|. +.+
T Consensus       113 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P---~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v  188 (254)
T 2c1o_A          113 FTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAP---TVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINV  188 (254)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCC---EEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCC---eeEeecCC-hhhccCCcEEEEEEEecccCCCcEE
Confidence            689999999999999999998765432 233456665433222   11111111 223357899999999543554 579


Q ss_pred             EEeECCEeccCC
Q psy14540        140 SWLKNGLPILSD  151 (291)
Q Consensus       140 ~W~~~~~~~~~~  151 (291)
                      .|+++|..+...
T Consensus       189 ~W~k~g~~l~~~  200 (254)
T 2c1o_A          189 KWKIDGSERQNG  200 (254)
T ss_dssp             EEEESSSEECTT
T ss_pred             EEEECCCcccCc
Confidence            999999887543

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.89  E-value=5e-22  Score=146.17  Aligned_cols=193  Identities=13%  Similarity=0.221  Sum_probs=114.9

Q ss_pred             cceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECC--eecC-----C----CeeEeceEEeeccceEEEEEEeecC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDG--YPLA-----G----DRFVMGQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~--~~~~-----~----~~~~~~~~~~~~~~~~~~l~i~~~~   70 (291)
                      .+.. |....+.+|++++|.|.+.+ .+ .+.+.|++++  ..+.     .    ... ..+.........++|.|.+++
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~L~I~~v~   80 (216)
T 2xzc_L            3 VLTQ-PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGI-PDRFSGSKSGTSATLGITGLQ   80 (216)
T ss_dssp             CBBC-CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTC-CTTEEEEEETTEEEEEECSCC
T ss_pred             cEEC-CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCC-CCceEEeccCCEEEEEECCCC
Confidence            3444 77889999999999999543 32 5789999953  2110     0    000 011111123345689999999


Q ss_pred             CCCCeEEEEEEeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEe
Q psy14540         71 VEDSGIYQCTATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLP  147 (291)
Q Consensus        71 ~~d~G~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~  147 (291)
                      .+|+|.|+|.+.+..+  .......|.|...+..|   ......+. .....|+.++|.|.+.++.|.+ .+.|+++|..
T Consensus        81 ~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P---~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  156 (216)
T 2xzc_L           81 TGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAP---SVFIFPPS-DEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL  156 (216)
T ss_dssp             GGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCC---EEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             cccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCC---ceEEeCCC-hhhccCCcEEEEEEEEeEcCCceEEEEEECCee
Confidence            9999999999998765  22334566775432222   11111111 1223588999999995446664 8999999998


Q ss_pred             ccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540        148 ILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA  227 (291)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  227 (291)
                      +.......             ........|.|..                    .+.|.|..+..+|+|.|+|.|.|...
T Consensus       157 ~~~~~~~~-------------~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (216)
T 2xzc_L          157 QSGNSQES-------------VTEQDSKDSTYSL--------------------SSTLTLSKADYEKHKVYACEVTHQGL  203 (216)
T ss_dssp             CCSSEEEE-------------ECCCCTTTCCEEE--------------------EEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             cCCCeeEe-------------cCcccCCCCCEEE--------------------EEEEEECHHHhCCCCcEEEEEEcCCC
Confidence            75431110             1111223344432                    23566777777777777777777664


Q ss_pred             cCCceeEE
Q psy14540        228 SDNHSSNL  235 (291)
Q Consensus       228 ~~~~~~~l  235 (291)
                      .......+
T Consensus       204 ~~~~~~~i  211 (216)
T 2xzc_L          204 SSPVTKSF  211 (216)
T ss_dssp             SSCEEEEE
T ss_pred             CCceEEec
Confidence            44444443

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.89  E-value=7.6e-22  Score=148.64  Aligned_cols=190  Identities=16%  Similarity=0.233  Sum_probs=118.5

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCC-----CCeeEEEECCe--ecC-----CCeeE---eceEEeeccceEEEEEEe
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDGY--PLA-----GDRFV---MGQYMSLHGDVISHVNIS   67 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~--~~~-----~~~~~---~~~~~~~~~~~~~~l~i~   67 (291)
                      +.+...|..+.+.+|++++|.|.+.+.+     .+.+.|+|++.  .+.     .....   ..+.........++|.|.
T Consensus        35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~  114 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRIS  114 (252)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEEC
Confidence            4556668888999999999999998866     58899999541  110     00000   011111122344689999


Q ss_pred             ecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECC
Q psy14540         68 SVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNG  145 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~  145 (291)
                      +++.+|+|.|+|.+.+..+. ......+.|......|   ......+. ..+.+|+.++|.|.+....|.+ .+.|+++|
T Consensus       115 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P---~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g  190 (252)
T 3bkj_L          115 RVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAP---TVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDG  190 (252)
T ss_dssp             SCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCC---EEEEECCC-HHHHHHTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred             CCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCc---EEEEeCCC-hhhcCCCcEEEEEEEeeEeCCCcEEEEEECC
Confidence            99999999999999876442 2233466775433222   11111111 2234689999999995446654 89999999


Q ss_pred             EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540        146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT  225 (291)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  225 (291)
                      ..+.....             ..........|.|..                    .+.|.|..+..+|+|.|+|.|.|.
T Consensus       191 ~~~~~~~~-------------~~~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~  237 (252)
T 3bkj_L          191 SERQNGVL-------------NSWTDQDSKDSTYSM--------------------SSTLTLTKDEYERHNSYTCEATHK  237 (252)
T ss_dssp             EEECSSEE-------------EEECCCCTTTCCEEE--------------------EEEEEEEHHHHHHCCEEEEEEECT
T ss_pred             eecCCCee-------------eecCcccCCCCCEEE--------------------EEEEEEcchhccCCCeEEEEEEeC
Confidence            88753311             011122233344433                    346788888888889999998887


Q ss_pred             CccC
Q psy14540        226 VASD  229 (291)
Q Consensus       226 ~~~~  229 (291)
                      ....
T Consensus       238 ~~~~  241 (252)
T 3bkj_L          238 TSTS  241 (252)
T ss_dssp             TCSS
T ss_pred             CCCC
Confidence            6443

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.89  E-value=9.6e-22  Score=151.16  Aligned_cols=188  Identities=18%  Similarity=0.250  Sum_probs=124.6

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCe-eEEEE-CCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKL-DGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+. ..++..     .. .  ..|.|.+++.+|+|.|+|.+
T Consensus        92 ~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-----~~-~--~~L~i~~v~~~d~G~Y~C~a  163 (289)
T 3ejj_X           92 WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFF-----SP-W--RGFIIRKAKVLDSNTYVCKT  163 (289)
T ss_dssp             EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEE-----ET-T--TEEEESSCCGGGCEEEEEEE
T ss_pred             eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEE-----CC-C--CCEEEeecccccCEEEEEEE
Confidence            45566778899999999999999855554 99987 666655 222222     11 1  23889999999999999999


Q ss_pred             e-CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540         82 T-NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        82 ~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      . +..+.....+.|.|......++   .....+....+.+|+.+.|.|.+..+.|.+.+.|++++..+............
T Consensus       164 ~~~~~~~~~~~~~l~V~~~~~~~p---~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  240 (289)
T 3ejj_X          164 MVNGRESTSTGIWLKVNRVHPEPP---QIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNY  240 (289)
T ss_dssp             EETTEEEECCCEEEEEESSCCCCC---EEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSS
T ss_pred             EeCCCccccccEEEEEEECCCCCC---eEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccce
Confidence            8 4445566777888875432221   12222344566789999999999544889999999999887543221110000


Q ss_pred             CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC
Q psy14540        161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP  240 (291)
Q Consensus       161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~  240 (291)
                                        +                    .....|.|.++..+|+|.|+|.|.|..|....++.|.+..+
T Consensus       241 ------------------~--------------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~  282 (289)
T 3ejj_X          241 ------------------Y--------------------KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES  282 (289)
T ss_dssp             ------------------E--------------------EEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC--
T ss_pred             ------------------E--------------------EeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEec
Confidence                              0                    01345666777777777777777777777777777776654


Q ss_pred             C
Q psy14540        241 P  241 (291)
Q Consensus       241 p  241 (291)
                      +
T Consensus       283 ~  283 (289)
T 3ejj_X          283 H  283 (289)
T ss_dssp             -
T ss_pred             c
Confidence            4

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.89  E-value=5.9e-23  Score=151.82  Aligned_cols=193  Identities=17%  Similarity=0.336  Sum_probs=119.4

Q ss_pred             ceeeeecCCcEEEEEEecCCCC-----CeeEEEECCeecC-----CCeeE----eceEEeec---cceEEEEEEeecCCC
Q psy14540         10 IQQTLQPGPPVSLKCIATGNPT-----PHISWKLDGYPLA-----GDRFV----MGQYMSLH---GDVISHVNISSVRVE   72 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~~-----~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~   72 (291)
                      .++.+.+|++++|.|.+.+.+.     +.+.|++++....     .....    ..+.....   ..+..+|.|.+++.+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            3467899999999999887543     6799999764331     00000    00000000   112466999999999


Q ss_pred             CCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE-CCEeccCC
Q psy14540         73 DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILSD  151 (291)
Q Consensus        73 d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~  151 (291)
                      |+|.|+|.+.+. +.....+.|.|...+..|.    ... .....+.+|+.++|.|.+..+.|.+.+.|++ ++..+...
T Consensus        83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~----i~~-~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~  156 (222)
T 4i0k_A           83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPS----MTL-EPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGN  156 (222)
T ss_dssp             GCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCE----EEC-CC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSE
T ss_pred             cCEEEEEEEEeC-CCceEEEEEEEEcCCCCCc----EEe-CCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCC
Confidence            999999999864 3445556666665543331    111 1223567899999999996688999999998 44444221


Q ss_pred             CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCc
Q psy14540        152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  231 (291)
Q Consensus       152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  231 (291)
                      ......               ....|.|                       ..|.|.++..+|.|.|+|.|.|..+....
T Consensus       157 ~~~~~~---------------~~~~~~~-----------------------~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~  198 (222)
T 4i0k_A          157 VTTSQM---------------ANERGLF-----------------------DVHSVLRVVLGANGTYSCLVRNPVLQQDA  198 (222)
T ss_dssp             EEEEEE---------------ECTTSCE-----------------------EEEEEEEEECCTTCEEEEEEEETTTTEEE
T ss_pred             cceeEE---------------cCCCCeE-----------------------EEEEEEEEEeCCCCEEEEEEECCCCCCce
Confidence            111000               0111222                       24678888899999999999999998888


Q ss_pred             eeEEEEecCCCCCCC
Q psy14540        232 SSNLRVNVPPHIGPF  246 (291)
Q Consensus       232 ~~~l~v~~~p~~~~~  246 (291)
                      ++.|.|..+|.....
T Consensus       199 ~~~l~V~~~p~~~~~  213 (222)
T 4i0k_A          199 HGSVTITGQPLTFPP  213 (222)
T ss_dssp             EEEEECCC-------
T ss_pred             EEEEEEeCCccccCC
Confidence            899998877755443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.88  E-value=3.4e-22  Score=145.38  Aligned_cols=133  Identities=16%  Similarity=0.222  Sum_probs=89.9

Q ss_pred             eeeeecCCcEEEEEEecC----CCCCeeEEEECCeecC---CCeeEe-c---eEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540         11 QQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLA---GDRFVM-G---QYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~----~~~~~v~W~~~~~~~~---~~~~~~-~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ++.+.+|++++|.|.+..    .+.+.+.|++++..+.   ...... .   .+.........+|.|.+++.+|+|.|+|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            467899999999999863    3567899999987653   111000 0   0000001123469999999999999999


Q ss_pred             EEeCCCCce-----eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540         80 TATNRVGSQ-----THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD  151 (291)
Q Consensus        80 ~~~~~~~~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~  151 (291)
                      .+.+..+..     ...+.|.|...+..|.  ...      .....|+.+.|.|.+..++|.|.+.|+++|..+...
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~--~~~------~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~  151 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPS--ISD------FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAI  151 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCE--EEE------EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCS
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCc--eEe------ccCCCCCeEEEEEecCCccCCCEEEEEECCEECccc
Confidence            999866543     3466777766543221  111      112458899999999558999999999999887643

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.88  E-value=2.3e-22  Score=149.83  Aligned_cols=144  Identities=17%  Similarity=0.284  Sum_probs=89.8

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCC-CC-eeEEEECC--eecC---------CCeeEeceEEeeccceEEEEEEeec
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-TP-HISWKLDG--YPLA---------GDRFVMGQYMSLHGDVISHVNISSV   69 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~-~v~W~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~   69 (291)
                      +.+.. |....+.+|++++|.|.+.+.+ .+ .+.|++++  ..+.         ...+ ..+.........++|.|.++
T Consensus        21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~L~I~~v   98 (234)
T 2j6e_L           21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGV-PDRFSGSKSGTSASLAISGL   98 (234)
T ss_dssp             CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSS-CTTEEEEEETTEEEEEEESC
T ss_pred             cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCc-cccEEEEecCCeEEEEECCC
Confidence            34455 7778899999999999998743 34 69999863  2210         0000 01111111234468999999


Q ss_pred             CCCCCeEEEEEEeCCCC---ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECC
Q psy14540         70 RVEDSGIYQCTATNRVG---SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNG  145 (291)
Q Consensus        70 ~~~d~G~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~  145 (291)
                      +.+|+|.|+|.+.+..+   .....+.+.|...+..++... . ..+. ....+|+.++|.|.+.+..|. +.+.|+++|
T Consensus        99 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~-~-~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g  175 (234)
T 2j6e_L           99 RSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVT-L-FPPS-SEELQANKATLVCLISDFFPGAVTVAWKADG  175 (234)
T ss_dssp             CSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCC-E-ECCC-HHHHTTSCCCEEECCCBCSSCCCEEEEEETT
T ss_pred             CHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCccc-c-cCCC-hhHhcCCceEEEEEEEEEcCCceEEEEEECC
Confidence            99999999999997766   223345566643321111111 1 1111 223468899999999544554 489999999


Q ss_pred             EeccCC
Q psy14540        146 LPILSD  151 (291)
Q Consensus       146 ~~~~~~  151 (291)
                      ..+...
T Consensus       176 ~~l~~~  181 (234)
T 2j6e_L          176 APVKAG  181 (234)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            987543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.88  E-value=1e-21  Score=147.36  Aligned_cols=195  Identities=17%  Similarity=0.253  Sum_probs=123.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--Cee------------cCC-----CeeEeceEEeeccceEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYP------------LAG-----DRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~------------~~~-----~~~~~~~~~~~~~~~~~   62 (291)
                      .+.++..|..+.+.+|++++|.| ..+.+.+.+.|+|.  +..            ...     .++..    .......+
T Consensus         2 ~~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~----~~~~~~~~   76 (245)
T 4ei6_B            2 GPKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSV----ERPDGSYF   76 (245)
T ss_dssp             CCCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEE----ECCTTSCE
T ss_pred             CcceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEE----EeccCceE
Confidence            36778888889999999999999 55677889999981  111            110     12211    11123457


Q ss_pred             EEEEeecCCCCCeEEEEEEeCC----CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-
Q psy14540         63 HVNISSVRVEDSGIYQCTATNR----VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-  137 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~----~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-  137 (291)
                      +|.|.+++.+|+|.|.|.+.+.    .........+.|................+....+.+|+.++|.|.+.+..|.+ 
T Consensus        77 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~  156 (245)
T 4ei6_B           77 TLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  156 (245)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCe
Confidence            8999999999999999999842    22334455677764211101111222233334456799999999985446655 


Q ss_pred             eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-Ce
Q psy14540        138 TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SG  216 (291)
Q Consensus       138 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g  216 (291)
                      .+.|+++|..+.......         ...+.....++.|.|.+                    .+.|.|.....+| +|
T Consensus       157 ~v~W~~~g~~l~~~~~~~---------~~~~~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~~g  207 (245)
T 4ei6_B          157 ELSWWVNGKEVHSGVCTD---------PQPLKEQPALNDSRYAL--------------------SSRLRVSATFWQNPRN  207 (245)
T ss_dssp             EEEEEETTEEECTTEEEC---------SSCEESSTTSTTCCEEE--------------------EEEEEEEHHHHSCTTC
T ss_pred             EEEEEECCEECCCCcccc---------cccccccccCCCCCEEE--------------------EEEEEEcHHHhccCCC
Confidence            899999998886432110         00111222334566655                    2457788887777 99


Q ss_pred             eEEEEeeeCCccCC
Q psy14540        217 NYTCVASNTVASDN  230 (291)
Q Consensus       217 ~y~C~~~~~~~~~~  230 (291)
                      .|+|.|.|......
T Consensus       208 ~ytC~v~~~~l~~~  221 (245)
T 4ei6_B          208 HFRCQVQFYGLSEN  221 (245)
T ss_dssp             EEEEEEEECCBCTT
T ss_pred             eEEEEEEECCCCCc
Confidence            99999998764433

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.88  E-value=1.2e-21  Score=146.56  Aligned_cols=189  Identities=18%  Similarity=0.269  Sum_probs=119.1

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eec------------C----CCeeEeceEEeeccceEEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPL------------A----GDRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~------------~----~~~~~~~~~~~~~~~~~~~l   64 (291)
                      +.+...|..+.+.+|++++|.|.+.+ +.+.+.|+|..  ...            .    ..++..    .......++|
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~----~~~~~~~~sL   77 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSV----QQFDDYHSEM   77 (240)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEE----EECTTSCEEE
T ss_pred             cccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEE----EeCCCCEEEE
Confidence            56777888899999999999999875 67789999821  110            0    011111    1113345789


Q ss_pred             EEeecCCCCCeEEEEEEeCC---CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeE
Q psy14540         65 NISSVRVEDSGIYQCTATNR---VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TIS  140 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~~~---~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~  140 (291)
                      .|.+++.+|+|.|.|.+.+.   .........+.|......+.........+....+.+|+.++|.|.+...+|.+ .+.
T Consensus        78 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~  157 (240)
T 3q5y_A           78 NMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELS  157 (240)
T ss_dssp             EECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             EECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEE
Confidence            99999999999999999732   22234455677764211111111222233334556789999999995446766 899


Q ss_pred             EeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-CeeEE
Q psy14540        141 WLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SGNYT  219 (291)
Q Consensus       141 W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~  219 (291)
                      |+++|..+.......             ..+.....|.|.+                    .+.|.|.....+| +|.|+
T Consensus       158 W~~~g~~l~~~~~~~-------------~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~~g~Yt  204 (240)
T 3q5y_A          158 WWVNGKEVHSGVSTD-------------PQAYKESNYSYSL--------------------SSRLRVSATFWHNPRNHFR  204 (240)
T ss_dssp             EEETTEEECTTEEEC-------------SSCEEEETTEEEE--------------------EEEEEEEHHHHSCTTCEEE
T ss_pred             EEECCEECcCcEecC-------------CceeeCCCCCEEE--------------------EEEEEECHHHhccCCCEEE
Confidence            999999875432110             0001112344544                    2457788887777 77899


Q ss_pred             EEeeeCCccC
Q psy14540        220 CVASNTVASD  229 (291)
Q Consensus       220 C~~~~~~~~~  229 (291)
                      |.|.|.....
T Consensus       205 C~v~~~~~~~  214 (240)
T 3q5y_A          205 CQVQFHGLSE  214 (240)
T ss_dssp             EEEEECCBCT
T ss_pred             EEEEcCCCCC
Confidence            9998876443

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.88  E-value=8.7e-22  Score=149.71  Aligned_cols=193  Identities=16%  Similarity=0.228  Sum_probs=123.3

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC------------C-----CeeEeceEEeeccceEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA------------G-----DRFVMGQYMSLHGDVISH   63 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~------------~-----~~~~~~~~~~~~~~~~~~   63 (291)
                      +.++..|....+.+|++++|.|.+. .+.+.+.|+|  .+....            .     +++..    .......++
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~----~~~~~~~~s  101 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFA----VRPEGSVST  101 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEE----ECTTSSSEE
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEE----EecCCCEEE
Confidence            4566777888999999999999986 5678899998  222111            0     11111    111234578


Q ss_pred             EEEeecCCCCCeEEEEEEeCC--CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeE
Q psy14540         64 VNISSVRVEDSGIYQCTATNR--VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TIS  140 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~~~~--~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~  140 (291)
                      |.|.+++.+|+|.|+|.+.+.  .........+.|................+....+.+|+.++|.|.+....|.+ .+.
T Consensus       102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  181 (268)
T 3pl6_D          102 LKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS  181 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             EEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEE
Confidence            999999999999999999863  33344455677765221111111122233334556799999999995445544 899


Q ss_pred             EeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-CeeEE
Q psy14540        141 WLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SGNYT  219 (291)
Q Consensus       141 W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~  219 (291)
                      |+++|..+.......         .........++.|.|.+                    .+.|.|.....+| +|.|+
T Consensus       182 W~~~g~~l~~~~~~~---------~~~~~~~~~~~~~~~~~--------------------~s~l~i~~~~~~d~~g~Yt  232 (268)
T 3pl6_D          182 WWVNGKEVHSGVCTD---------PQPLKEQPALNDSRYSL--------------------SSRLRVSATFWQNPRNHFR  232 (268)
T ss_dssp             EEESSSEECTTEEEC---------SSCEESSTTCTTCCEEE--------------------EEEEEEEHHHHSCTTCEEE
T ss_pred             EEECCEECCCCeEec---------cccccccccCCCCcEEE--------------------EEEEEEcHHHhccCCCEEE
Confidence            999998875431100         01112233445666765                    2457777777777 99999


Q ss_pred             EEeeeCCccC
Q psy14540        220 CVASNTVASD  229 (291)
Q Consensus       220 C~~~~~~~~~  229 (291)
                      |.|.|.....
T Consensus       233 C~v~~~~l~~  242 (268)
T 3pl6_D          233 CQVQFYGLSE  242 (268)
T ss_dssp             EEEEECCBCT
T ss_pred             EEEEcCCCCC
Confidence            9999887443

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.88  E-value=1.8e-22  Score=150.35  Aligned_cols=184  Identities=16%  Similarity=0.255  Sum_probs=97.4

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC-------------CCeeEeceEEeeccceEEEEEEe
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA-------------GDRFVMGQYMSLHGDVISHVNIS   67 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~   67 (291)
                      +.+...|....+.+|++++|.|.+.+.+.+.+.|++++  ..+.             ..++..     ......++|.|.
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~   98 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSS-----SGYGTDFVFTIE   98 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCC-----CEEEEEEEEC--
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEe-----eccCCEEEEEEC
Confidence            45566688888999999999999988666789999853  2110             111111     112344679999


Q ss_pred             ecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECC
Q psy14540         68 SVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNG  145 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~  145 (291)
                      +++.+|+|.|.|.+.+..+. ......+.|...+..|   ......+. ....+|+.++|.|.+.+..|.+ .+.|+++|
T Consensus        99 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p---~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g  174 (233)
T 3bqu_C           99 NMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAP---TVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDG  174 (233)
T ss_dssp             ---CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCC---EEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-
T ss_pred             CCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCC---EEEEeCCC-HHhhcCCceEEEEEEccccCCceEEEEEECC
Confidence            99999999999999876543 2233456665433222   11111111 2233699999999995445554 79999999


Q ss_pred             EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540        146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT  225 (291)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  225 (291)
                      ..+.....             .......+..|.|..                    .+.|.|..+..+|+|.|+|.|.|.
T Consensus       175 ~~~~~~~~-------------~~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~  221 (233)
T 3bqu_C          175 SERQNGVL-------------NSWTDQDSKDSTYSM--------------------SSTLTLTKDEYERHNSYTCEATHK  221 (233)
T ss_dssp             ----CCEE-------------EEECCCCTTTCCEEE--------------------EEEEEEEHHHHHTCCCEEEEEEEC
T ss_pred             eeCCCCce-------------EecCCccCCCCCEEE--------------------EEEEEECHHHhCCCCCEEEEEEeC
Confidence            87653311             111122223344543                    245777777788888888888887


Q ss_pred             Ccc
Q psy14540        226 VAS  228 (291)
Q Consensus       226 ~~~  228 (291)
                      ...
T Consensus       222 ~~~  224 (233)
T 3bqu_C          222 TST  224 (233)
T ss_dssp             ---
T ss_pred             CCC
Confidence            643

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.88  E-value=3.5e-21  Score=146.92  Aligned_cols=143  Identities=16%  Similarity=0.241  Sum_probs=91.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCe-----ecC--CCee---EeceEEeeccceEEEEEEeecCC
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY-----PLA--GDRF---VMGQYMSLHGDVISHVNISSVRV   71 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-----~~~--~~~~---~~~~~~~~~~~~~~~l~i~~~~~   71 (291)
                      .+.|...|..+.+.+|++++|.|.+.+.+.+.+.|++++.     .+.  ....   ...+.........++|.|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            3567778888899999999999999988888999998542     110  0000   00011111223446799999999


Q ss_pred             CCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCC-------cccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEE
Q psy14540         72 EDSGIYQCTATNRVGS-QTHSADMRVYDAPGQP-------QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISW  141 (291)
Q Consensus        72 ~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W  141 (291)
                      +|+|.|.|.+.+..+. ......|.|...+...       .........+....+.+|+.++|.|.+. +.+  .+.+.|
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~-g~~~~~~~v~W  170 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAAS-GFTISDYWIHW  170 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEE-SSCGGGSEEEE
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEec-CccCCCCEEEE
Confidence            9999999999876443 3334566666543100       0001111223457788999999999994 544  589999


Q ss_pred             eECC
Q psy14540        142 LKNG  145 (291)
Q Consensus       142 ~~~~  145 (291)
                      ++++
T Consensus       171 ~k~~  174 (276)
T 3auv_A          171 VRQA  174 (276)
T ss_dssp             EEEC
T ss_pred             EEcC
Confidence            9964

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.87  E-value=7.9e-22  Score=142.28  Aligned_cols=164  Identities=18%  Similarity=0.297  Sum_probs=107.5

Q ss_pred             eecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC---CCe-----eEe-c----eEEeeccceEEEEEEeecCCC
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA---GDR-----FVM-G----QYMSLHGDVISHVNISSVRVE   72 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~---~~~-----~~~-~----~~~~~~~~~~~~l~i~~~~~~   72 (291)
                      ..|..+.+.+|++++|.|.+.+ .+.+.|.|++++..+.   ...     ... .    .+.....  ..+|+|.+++.+
T Consensus         3 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~sL~I~~v~~~   80 (193)
T 2if7_A            3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ--SYSLQLSNLKME   80 (193)
T ss_dssp             CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECT--TCCEEECSCCGG
T ss_pred             CCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECC--CeEEEECCCCcc
Confidence            3466788999999999999875 4556899999876442   100     000 0    0001111  256999999999


Q ss_pred             CCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCC-ceEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540         73 DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD-RAGVQCLVTKGDPPLTISWLKNGLPILSD  151 (291)
Q Consensus        73 d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~~p~~~~~W~~~~~~~~~~  151 (291)
                      |+|.|+|.+.+..+.....+.|.|...+..|    ......  .....|. .++|.|.+..+.|.+.+.|+++|..+...
T Consensus        81 D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p----~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~  154 (193)
T 2if7_A           81 DTGSYRAQISTKTSAKLSSYTLRILRQLRNI----QVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ  154 (193)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEECCCEEE----EEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESS
T ss_pred             cCceEEEEEEecCCCeEEEEEEEEEccCCCC----eEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCC
Confidence            9999999999877766667788887654222    111111  1233455 89999999544668999999998765322


Q ss_pred             CceEEeccCCceEEEEEeeCCCC-CceeEEEEEEecCCCC
Q psy14540        152 AEITIRSSGEYTSSLSIATLSTG-HSGNYTCVASNTVASD  190 (291)
Q Consensus       152 ~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~~  190 (291)
                                  ..|.+.....+ |.|.|+|.|.|..+..
T Consensus       155 ------------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          155 ------------PNLTVSWDPRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             ------------SEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred             ------------CeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence                        23555443443 7888888888877654

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.87  E-value=5.4e-22  Score=155.54  Aligned_cols=177  Identities=16%  Similarity=0.262  Sum_probs=122.1

Q ss_pred             ecceeeeecC---CcEEEEEE-ecCCCCCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEE
Q psy14540          8 KFIQQTLQPG---PPVSLKCI-ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         8 ~~~~~~v~~g---~~v~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      .+....+.+|   +.+.|.|. ..+.|.+.+.|++++.......    ......+  ...+.|.|.+++..|+|.|+|.+
T Consensus       138 ~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  213 (331)
T 3u83_A          138 TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ----EIRNPNGTVTVISRYRLVPSREAHQQSLACIV  213 (331)
T ss_dssp             CSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEE----EEECTTSCEEEEEEEEECCCGGGTTCEEEEEE
T ss_pred             CCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccc----eeECCCCcEEEEEEEEEEeccccCCCEEEEEE
Confidence            3455667888   77999998 6678889999999633211000    0000111  12356889999999999999999


Q ss_pred             eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce-eEEeECCEeccCCCceEEeccC
Q psy14540         82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPILSDAEITIRSSG  160 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~  160 (291)
                      .+..+.....+.|.|...|.      ..........+.+|+.+.|.|.+ .+.|.+. +.|++++..+......      
T Consensus       214 ~n~~~~~~~~~~l~V~~~P~------~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~i~W~~~~~~~~~~~~~------  280 (331)
T 3u83_A          214 NYHMDRFKESLTLNVQYEPE------VTIEGFDGNWYLQRMDVKLTCKA-DANPPATEYHWTTLNGSLPKGVEA------  280 (331)
T ss_dssp             EETTEEEEEEEECCEEEEEE------EEEECCCSCCBTTCCCEEEEEEE-EEESCCCEEEEEETTBSCCTTEEE------
T ss_pred             ecCCCcceeeEEEEEecCCe------EEEecCCCceEeCCCeEEEEEeC-cCCCCCCEEEEEECCCccccccee------
Confidence            98888777777787765441      12223344567889999999999 6888887 9999998876433110      


Q ss_pred             CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEe-eeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540        161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIA-TLSTGHSGNYTCVASNTVASDNHSSNLRVNV  239 (291)
Q Consensus       161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~  239 (291)
                                                              ....|.|. ++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       281 ----------------------------------------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  320 (331)
T 3u83_A          281 ----------------------------------------QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE  320 (331)
T ss_dssp             ----------------------------------------ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC
T ss_pred             ----------------------------------------cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEec
Confidence                                                    02356677 6777778888888888877777777777765


Q ss_pred             CC
Q psy14540        240 PP  241 (291)
Q Consensus       240 ~p  241 (291)
                      .+
T Consensus       321 ~~  322 (331)
T 3u83_A          321 AA  322 (331)
T ss_dssp             --
T ss_pred             cc
Confidence            44

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.87  E-value=6.6e-21  Score=142.50  Aligned_cols=140  Identities=14%  Similarity=0.185  Sum_probs=93.8

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCC----CCeeEEEECC--eecC----C-CeeE---eceEEeeccceEEEEEEee
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDG--YPLA----G-DRFV---MGQYMSLHGDVISHVNISS   68 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~--~~~~----~-~~~~---~~~~~~~~~~~~~~l~i~~   68 (291)
                      ..|...|....+.+|++++|.|.+.+.+    .+.+.|+|+.  ..+.    . ....   ..+.........++|.|.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (240)
T 1moe_A            2 IVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDP   81 (240)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             CceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcC
Confidence            3567788889999999999999999876    7789999952  2110    0 0000   0011111123456799999


Q ss_pred             cCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540         69 VRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ++.+|+|.|+|.+.+..+. ......|.|...+....... ....+....+.+|+.++|.|.+ .+.|  .+.+.|+++
T Consensus        82 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~-~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           82 VEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEV-QLQQSGAELVEPGASVKLSCTA-SGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             CCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCC-EEEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEE
T ss_pred             CChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceE-EEeCCCceEEeCCCcEEEEEEE-cCccCCCCEEEEEEE
Confidence            9999999999999876543 34456777766542111111 1122445678899999999999 4655  469999996

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.87  E-value=2.4e-21  Score=142.30  Aligned_cols=165  Identities=22%  Similarity=0.286  Sum_probs=103.0

Q ss_pred             eeecceeeeecCCcEEEEEEecCC-------CCCeeEEEECCeecC------------------CCeeEeceEEeeccce
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGN-------PTPHISWKLDGYPLA------------------GDRFVMGQYMSLHGDV   60 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~~------------------~~~~~~~~~~~~~~~~   60 (291)
                      +..|..+.+.+|++++|.|.+...       +.+.+.|+|++....                  ..++....   .....
T Consensus         4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~   80 (214)
T 2zg1_A            4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLG---DVQKK   80 (214)
T ss_dssp             EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECS---CGGGT
T ss_pred             eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEec---cCCCC
Confidence            345777899999999999998753       467899999765210                  01111100   01123


Q ss_pred             EEEEEEeecCCCCCeEEEEEEeCCCCce----eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC---
Q psy14540         61 ISHVNISSVRVEDSGIYQCTATNRVGSQ----THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG---  133 (291)
Q Consensus        61 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~---  133 (291)
                      .++|.|.+++.+|+|.|.|.+.+..+..    ...+.|.|...+..|...    . +  ..+.+|+.++|.|.+...   
T Consensus        81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~----~-~--~~~~~G~~v~L~C~~~~~~~~  153 (214)
T 2zg1_A           81 NCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIH----F-L--EPLESGRPTRLSCSLPGSCEA  153 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---------CCCCTTCCEEEEEECTTCCSC
T ss_pred             eEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCcee----c-C--ccccCCCeEEEEEEeccCCCC
Confidence            4579999999999999999998765321    246778888765433211    1 1  126689999999998432   


Q ss_pred             CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        134 DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       134 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      .|.+.+.|++++.......       ......|.|..+..+|.|.|+|.|.|..
T Consensus       154 ~p~p~v~W~~~~~~~~~~~-------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~  200 (214)
T 2zg1_A          154 GPPLTFSWTGNALSPLDPE-------TTRSSELTLTPRPEDHGTNLTCQMKRQG  200 (214)
T ss_dssp             SSCCEEEEESSTTSSSCSS-------CCCSSEEEECCCTTCCSCEEEEEEECC-
T ss_pred             CCCceEEEeCCCCccCCCC-------ceeEEEEEEecccHHcCcEEEEEEEeCC
Confidence            4789999999885432110       0112345555555555555555555543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.87  E-value=2.7e-21  Score=144.43  Aligned_cols=136  Identities=15%  Similarity=0.238  Sum_probs=90.4

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC----------------CCeeEeceEEeeccceEEEEE
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA----------------GDRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~l~   65 (291)
                      .|...|..+.+.+|++++|.|. .+.+.+.+.|+|+  +....                ..++..    .......++|+
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~----~~~~~~~~~L~   76 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKA----SRPSQENFSLI   76 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEE----ECCSSSBCEEE
T ss_pred             cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEE----EccCCceEEEE
Confidence            5677888899999999999999 5677889999995  21110                111111    11123346799


Q ss_pred             EeecCCCCCeEEEEEEeCCCCc-----eeeeeeEEEEcCCCCCcc-----cceeccCCcceeecCCCceEEEEEeeCCCC
Q psy14540         66 ISSVRVEDSGIYQCTATNRVGS-----QTHSADMRVYDAPGQPQD-----VKLVTSNSRSIKVHSGDRAGVQCLVTKGDP  135 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p  135 (291)
                      |.+++.+|+|.|+|.+.+..+.     ......|.|...+..+.+     .......+....+.+|+.++|.|.+ .+.|
T Consensus        77 I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-~~~p  155 (238)
T 2p1y_A           77 LELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSY-ENSA  155 (238)
T ss_dssp             ESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEEC-CCTT
T ss_pred             EecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEE-ecCC
Confidence            9999999999999999876542     123456777654310000     0011223445678899999999999 6888


Q ss_pred             CceeEEeECC
Q psy14540        136 PLTISWLKNG  145 (291)
Q Consensus       136 ~~~~~W~~~~  145 (291)
                      .+.+.|++++
T Consensus       156 ~~~i~W~k~~  165 (238)
T 2p1y_A          156 FDYFPWYQQF  165 (238)
T ss_dssp             CCEEEEEEEC
T ss_pred             CCcEEEEEEC
Confidence            8999999964

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.87  E-value=7.8e-22  Score=151.78  Aligned_cols=190  Identities=22%  Similarity=0.237  Sum_probs=122.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCC-CeeEEE-ECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCe-EE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWK-LDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSG-IY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y   77 (291)
                      +|.+...+....+.+|+.+.|.|.+.+ |. +.+.|+ ++|..+... ++..     ...   ..|.|.+++.+|+| .|
T Consensus        91 ~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~-----~~~---~~L~i~~v~~~d~G~~Y  161 (290)
T 2o26_X           91 PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVP-----NPK---AGITIKNVKRAYHRLCV  161 (290)
T ss_dssp             SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEE-----ETT---TEEEEESCCGGGTTCEE
T ss_pred             CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceee-----CCC---CCEEEecccHHHCCCEE
Confidence            454455666778899999999999985 66 899995 688777632 2211     111   24899999999999 99


Q ss_pred             EEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce-eEEeECCEec----cCC
Q psy14540         78 QCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPI----LSD  151 (291)
Q Consensus        78 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~----~~~  151 (291)
                      +|.+.+..+.. +..+.+.|...+..++   .....+....+.+|+.++|.|.+ .+.|.+. +.|++++..+    ...
T Consensus       162 ~C~a~n~~~~~~s~~~~l~V~~~~~~~P---~i~~~~~~~~v~~G~~v~l~C~~-~g~p~p~~i~W~~~~~~~~~~~~~~  237 (290)
T 2o26_X          162 RCAAQRDGTWLHSDKFTLKVREAIKAIP---VVSVPETSHLLKKGDTFTVVCTI-KDVSTSVNSMWLKMNPQPQHIAQVK  237 (290)
T ss_dssp             EEEEEETTEEEECCCEEEEEECCCCSCC---EEECSCSBCCCCTTCCEEEEEEE-EESSTTCEEEEEEESSSEEECCCEE
T ss_pred             EEEEEECCceEEeEEEEEEEEeCCCCCC---ccccCCCcceEecCCcEEEEEEE-ecCCcceeEEEecCCCCCccceeec
Confidence            99999874442 3356777764332221   12233344578899999999999 5888886 9999998763    221


Q ss_pred             CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCc
Q psy14540        152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  231 (291)
Q Consensus       152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  231 (291)
                      .........                                     .......|.|.++..+|+|.|+|.|.|..|..+.
T Consensus       238 ~~~~~~~~~-------------------------------------~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~  280 (290)
T 2o26_X          238 HNSWHRGDF-------------------------------------NYERQETLTISSARVDDSGVFMCYANNTFGSANV  280 (290)
T ss_dssp             CCEEEEETT-------------------------------------EEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEE
T ss_pred             ccccccCce-------------------------------------eeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEE
Confidence            111111000                                     0001245677777777777777777777777777


Q ss_pred             eeEEEEecCC
Q psy14540        232 SSNLRVNVPP  241 (291)
Q Consensus       232 ~~~l~v~~~p  241 (291)
                      .+.|.|..+|
T Consensus       281 ~~~l~V~~~P  290 (290)
T 2o26_X          281 TTTLKVVEKG  290 (290)
T ss_dssp             EEEECC----
T ss_pred             EEEEEEEeCC
Confidence            7777776554

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.87  E-value=1.7e-22  Score=148.26  Aligned_cols=138  Identities=21%  Similarity=0.320  Sum_probs=90.8

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-------------CCeeEeceEEeeccceEEEEEEeec
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-------------GDRFVMGQYMSLHGDVISHVNISSV   69 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~   69 (291)
                      +.. |....+.+|++++|.|.+.+.+.+.+.|+++  +..+.             ..++..     ......++|.|.++
T Consensus         3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~~v   76 (212)
T 1nfd_E            3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSG-----STSGTTATLTISGA   76 (212)
T ss_dssp             EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEE-----EEETTEEEEEETTC
T ss_pred             eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEE-----EeeCCEEEEEECcC
Confidence            445 8888999999999999988776778999984  32221             112111     12334567999999


Q ss_pred             CCCCCeEEEEEEeCCCC-c--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECC
Q psy14540         70 RVEDSGIYQCTATNRVG-S--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNG  145 (291)
Q Consensus        70 ~~~d~G~y~C~~~~~~~-~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~  145 (291)
                      +.+|+|.|+|.+.+... .  ......+.|...+..++  ... .......+.+|+.++|.|.+....|. +.+.|+++|
T Consensus        77 ~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p--~v~-~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g  153 (212)
T 1nfd_E           77 QPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSP--KVT-VFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANG  153 (212)
T ss_dssp             CGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCC--EEE-CCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETT
T ss_pred             CcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCC--EEE-eeCCchHhccCCceEEEEEEEeeECCccEEEEEECC
Confidence            99999999999985222 1  23345566654332111  111 11222234579999999999544455 799999999


Q ss_pred             EeccCC
Q psy14540        146 LPILSD  151 (291)
Q Consensus       146 ~~~~~~  151 (291)
                      ..+...
T Consensus       154 ~~~~~~  159 (212)
T 1nfd_E          154 ATINDG  159 (212)
T ss_dssp             EEECSS
T ss_pred             eEcCCC
Confidence            887644

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.87  E-value=1e-21  Score=160.14  Aligned_cols=185  Identities=16%  Similarity=0.206  Sum_probs=114.6

Q ss_pred             CcceeecceeeeecCCcEEEEEEecC-CCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATG-NPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      |.+...+....+.+|+.++|.|.+.+ .|.+ .+.|++++..+....... ..........+.|.|.++...| |.|+|.
T Consensus       124 P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~  201 (444)
T 1igt_B          124 PSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA-VLQSDLYTLSSSVTVTSSTWPS-QSITCN  201 (444)
T ss_dssp             CEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EEETTEEEEEEEEEECSTTTTT-SCCEEE
T ss_pred             CceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCc-cccCCcEEEEEEEEEchhhcCC-CeEEEE
Confidence            44443333334579999999999987 4665 999999987643100000 0000001123568999999999 999999


Q ss_pred             EeCCCCceeeeeeEEEEcC------------CCCCcccceeccCCccee-ecCCCceEEEEEeeCCC---C-CceeEEeE
Q psy14540         81 ATNRVGSQTHSADMRVYDA------------PGQPQDVKLVTSNSRSIK-VHSGDRAGVQCLVTKGD---P-PLTISWLK  143 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~------------~~~~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~---p-~~~~~W~~  143 (291)
                      +.+..+.......+.+...            .............+.... +.+|+.++|.|.+. +.   | .+.+.|++
T Consensus       202 a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~-g~~~~p~~~~v~W~k  280 (444)
T 1igt_B          202 VAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVV-DVSEDDPDVQISWFV  280 (444)
T ss_dssp             EEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEE-EECTTCCCCEEEEEE
T ss_pred             EEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEe-ecccCCCCeEEEEEE
Confidence            9988776543333322100            000000111112222222 57899999999995 55   3 46999999


Q ss_pred             CCEeccCCCce--EEeccC--CceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        144 NGLPILSDAEI--TIRSSG--EYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       144 ~~~~~~~~~~~--~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ++..+......  .....+  .....|.|..+..+|.|.|+|.|.|..+..
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~  331 (444)
T 1igt_B          281 NNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA  331 (444)
T ss_dssp             TTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred             CCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence            99887543221  111111  124579999999999999999999987765

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.87  E-value=7e-21  Score=143.73  Aligned_cols=139  Identities=17%  Similarity=0.340  Sum_probs=93.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC------------------CCeeEeceEEeeccc
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGD   59 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~   59 (291)
                      +|.+...+..+++.+|++++|.|.+.+.  +.+.+.|++..  ....                  ..++...   .....
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~   82 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFT---ADTSA   82 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEE---EETTT
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEE---EecCC
Confidence            5677788888999999999999999873  56789999832  2111                  0111110   01223


Q ss_pred             eEEEEEEeecCCCCCeEEEEEEeCC------------CCceeeeeeEEEEcCCCCCcc--------cceeccCCcceeec
Q psy14540         60 VISHVNISSVRVEDSGIYQCTATNR------------VGSQTHSADMRVYDAPGQPQD--------VKLVTSNSRSIKVH  119 (291)
Q Consensus        60 ~~~~l~i~~~~~~d~G~y~C~~~~~------------~~~~~~~~~l~v~~~~~~~~~--------~~~~~~~~~~~~~~  119 (291)
                      ..++|+|.+++.+|+|.|.|.+.+.            .........|.|...+.....        .......+....+.
T Consensus        83 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  162 (256)
T 3juy_B           83 NTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLS  162 (256)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEEC
T ss_pred             CEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEe
Confidence            4578999999999999999999875            233444566777664321000        11222345567888


Q ss_pred             CCCceEEEEEeeCCCCC-ceeEEeEC
Q psy14540        120 SGDRAGVQCLVTKGDPP-LTISWLKN  144 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~-~~~~W~~~  144 (291)
                      +|+.++|.|.+ .+.+. +.+.|++.
T Consensus       163 ~G~~v~L~C~~-~~~~~~~~v~W~k~  187 (256)
T 3juy_B          163 PGERATFSCRS-SHSIRSRRVAWYQH  187 (256)
T ss_dssp             TTSCEEEEEEE-SSCCTTCCEEEEEE
T ss_pred             CCCCEEEEEEE-CCCcCCeeEEEEEE
Confidence            99999999999 55664 89999983

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.87  E-value=1.2e-20  Score=141.72  Aligned_cols=136  Identities=20%  Similarity=0.369  Sum_probs=89.1

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccce
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDV   60 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~   60 (291)
                      +.+. .|....+.+|++++|.|.+.+.|  .+.+.|+++.  ....                  ..++...   ......
T Consensus         4 ~~v~-~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~   79 (247)
T 2ghw_B            4 VQLV-QSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTIS---RDNSKN   79 (247)
T ss_dssp             CEEE-EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEE---EETTTT
T ss_pred             eEEE-ecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEE---EeCCCC
Confidence            3444 45668899999999999998866  5789999842  1110                  1122111   111234


Q ss_pred             EEEEEEeecCCCCCeEEEEEEeCCCCc--eeeeeeEEEEcCCCCC--------cccceeccCCcceeecCCCceEEEEEe
Q psy14540         61 ISHVNISSVRVEDSGIYQCTATNRVGS--QTHSADMRVYDAPGQP--------QDVKLVTSNSRSIKVHSGDRAGVQCLV  130 (291)
Q Consensus        61 ~~~l~i~~~~~~d~G~y~C~~~~~~~~--~~~~~~l~v~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~l~C~~  130 (291)
                      .++|.|.+++.+|+|.|+|.+.+..+.  ....+.|.|...+...        .........+....+.+|+.++|.|.+
T Consensus        80 ~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~  159 (247)
T 2ghw_B           80 TLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRA  159 (247)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEE
T ss_pred             EEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEe
Confidence            577999999999999999999876221  2334567776542100        001112223445678899999999999


Q ss_pred             eCCCCCceeEEeE
Q psy14540        131 TKGDPPLTISWLK  143 (291)
Q Consensus       131 ~~~~p~~~~~W~~  143 (291)
                       .+.|.+.+.|++
T Consensus       160 -~~~~~~~v~W~k  171 (247)
T 2ghw_B          160 -SQSVRSNLAWYQ  171 (247)
T ss_dssp             -SSCCTTCEEEEE
T ss_pred             -CCCccceEEEEE
Confidence             677888999999

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.87  E-value=3.7e-22  Score=157.64  Aligned_cols=190  Identities=16%  Similarity=0.274  Sum_probs=101.9

Q ss_pred             cceeeeecCCcEEEEEEe-----cCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          9 FIQQTLQPGPPVSLKCIA-----TGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      +....+.+|+.+.|.|.+     .+.|.+.+.|++++..+... .+..      .+   ..|.|.+++.+|+|.|+|.+.
T Consensus       127 ~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~------~~---~~L~i~~v~~~d~G~Y~C~a~  197 (349)
T 4dep_C          127 PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP------EG---MNLSFLIALISNNGNYTCVVT  197 (349)
T ss_dssp             CEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEE------ET---TEEEEESCCGGGCEEEEEEEE
T ss_pred             CcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceee------cC---CEEEEeeeeecCCcEEEEEEE
Confidence            445678899999999985     56788999999999988632 1111      11   458999999999999999999


Q ss_pred             CCC-Cce---eeeeeEEEEcCCCCCcccceeccCCc-c-eeecCCCceEEEEEeeC---CCCCceeEEeECCEeccC-CC
Q psy14540         83 NRV-GSQ---THSADMRVYDAPGQPQDVKLVTSNSR-S-IKVHSGDRAGVQCLVTK---GDPPLTISWLKNGLPILS-DA  152 (291)
Q Consensus        83 ~~~-~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~-~-~~~~~g~~~~l~C~~~~---~~p~~~~~W~~~~~~~~~-~~  152 (291)
                      +.. +..   ...+.+.|...+....... ...... . ..+.+|+.++|.|.+..   +.|.+.+.|++++..+.. ..
T Consensus       198 n~~~g~~~~~~~~~~l~v~~~~~~~~~p~-i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~  276 (349)
T 4dep_C          198 YPENGRTFHLTRTLTVKVVGSPKNAVPPV-IHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITI  276 (349)
T ss_dssp             EEETTEEEEEEEEEEEEEECCGGGCCSCE-EC----------------CCCEEEEECCCTTCCCEEEEESSCC-------
T ss_pred             EeeCCEEEEEEEEEEEEEEccCCCCCCCe-EecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCC
Confidence            865 443   5666777765432110111 111121 1 26789999999999943   578899999999987754 11


Q ss_pred             ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCC-eeEEEEeeeCCccCCc
Q psy14540        153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHS-GNYTCVASNTVASDNH  231 (291)
Q Consensus       153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~-g~y~C~~~~~~~~~~~  231 (291)
                      +....       ...   ......+.+                     ....|.|.++..+|. |.|+|.|.|..|....
T Consensus       277 ~~~~~-------~~~---~~~~~~~~~---------------------~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~  325 (349)
T 4dep_C          277 DVTIN-------ESI---SHSRTEDET---------------------RTQILSIKKVTSEDLKRSYVCHARSAKGEVAK  325 (349)
T ss_dssp             -CCCC-------EEE---ECCTTCCEE---------------------EEECC-------------CEEEEECSSCEEEE
T ss_pred             ccccc-------cce---eeecCCCcE---------------------EEEEEEEeeccHHHcCCcEEEEEEcCCCcEEE
Confidence            11100       000   000011100                     134688899999999 9999999999998888


Q ss_pred             eeEEEEec
Q psy14540        232 SSNLRVNV  239 (291)
Q Consensus       232 ~~~l~v~~  239 (291)
                      .+.|.|..
T Consensus       326 ~~~l~v~~  333 (349)
T 4dep_C          326 AAKVKQKV  333 (349)
T ss_dssp             ECC-----
T ss_pred             EEEEeeec
Confidence            88888865

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.87  E-value=7.6e-21  Score=143.48  Aligned_cols=138  Identities=18%  Similarity=0.265  Sum_probs=91.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC--------------CCeeEeceEEeeccceEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA--------------GDRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~l~   65 (291)
                      +..|...|..+.+.+|++++|.|.+.+.+.+.+.|++..  ....              ..++..   ........++|.
T Consensus         3 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~sL~   79 (256)
T 3tf7_C            3 AQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEA---EFSKSDSSFHLR   79 (256)
T ss_dssp             -CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEE---EEETTTTEEEEE
T ss_pred             ccEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEE---EEcCCCCEEEEE
Confidence            356778888899999999999999988888999999832  1110              011111   001234457899


Q ss_pred             EeecCCCCCeEEEEEEeCCCCc----eeeeeeEEEEcCCC-------------CCcccceeccCCcceeecCCCceEEEE
Q psy14540         66 ISSVRVEDSGIYQCTATNRVGS----QTHSADMRVYDAPG-------------QPQDVKLVTSNSRSIKVHSGDRAGVQC  128 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~~~~----~~~~~~l~v~~~~~-------------~~~~~~~~~~~~~~~~~~~g~~~~l~C  128 (291)
                      |.+++.+|+|.|.|.+.+..+.    ....+.|.|.....             ...........+....+.+|+.++|.|
T Consensus        80 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C  159 (256)
T 3tf7_C           80 KASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSC  159 (256)
T ss_dssp             ESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECE
T ss_pred             ECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEE
Confidence            9999999999999999876442    23345677765100             000111222445556788999999999


Q ss_pred             EeeCCCCCceeEEeEC
Q psy14540        129 LVTKGDPPLTISWLKN  144 (291)
Q Consensus       129 ~~~~~~p~~~~~W~~~  144 (291)
                      .+ .+. .+.+.|++.
T Consensus       160 ~~-~~~-~~~v~W~k~  173 (256)
T 3tf7_C          160 RQ-TNS-HNYMYWYRQ  173 (256)
T ss_dssp             EE-CSC-CSEEEEEEE
T ss_pred             Ec-CCC-ceEEEEEEE
Confidence            99 454 679999984

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.87  E-value=2.8e-20  Score=144.87  Aligned_cols=136  Identities=17%  Similarity=0.222  Sum_probs=94.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...+... +.+|++++|.|.+. .+.+.+.|++++..+.......   ..........|.|.+++.+|+|.|+|.+
T Consensus       119 ~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a  193 (316)
T 3vh8_G          119 KPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVG---QIHDGVSKANFSIGPMMLALAGTYRCYG  193 (316)
T ss_dssp             CCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEEC---EEETTEEEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeee---eecCCCceEEEEECCCChhhCceEEEEE
Confidence            45566555544 88999999999995 4567899999988765221111   1112234467999999999999999999


Q ss_pred             eCCCCc-----eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540         82 TNRVGS-----QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus        82 ~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      .+..+.     .+....+.|...+..|.  ..  ..+. ..+.+|+.++|.|.+ . .|.+.+.|+++|..+.
T Consensus       194 ~n~~g~~~~s~~s~~~~l~V~~~~~~p~--i~--~~~~-~~v~~G~~v~L~C~~-~-~~~~~~~W~k~g~~~~  259 (316)
T 3vh8_G          194 SVTHTPYQLSAPSDPLDIVVTGPYEKPS--LS--AQPG-PKVQAGESVTLSCSS-R-SSYDMYHLSREGGAHE  259 (316)
T ss_dssp             ECTTCTTBCCCCCCCEEEEEECSSCCCE--EE--EESC-SCCCTTSCCEEEEEE-S-SCCSEEEEEETTSSCC
T ss_pred             ecCCCCccccCCCCCEEEEecCCCCCCe--EE--eCCC-CeecCCCcEEEEEEC-C-CCCcEEEEEECCCcCC
Confidence            987663     24556677765443331  11  1111 256789999999998 3 4778999999997664

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.87  E-value=1.7e-20  Score=141.57  Aligned_cols=133  Identities=18%  Similarity=0.293  Sum_probs=88.1

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC-----------------CCeeEeceEEeeccceEEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA-----------------GDRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~   65 (291)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+++  +..+.                 ..++...   .......++|+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~L~   81 (257)
T 1f3r_B            5 LESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSIS---RDTSKNQVFLK   81 (257)
T ss_dssp             EEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEE---EETTTTEEEEE
T ss_pred             ECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEE---EECCCCEEEEE
Confidence            455667899999999999998764  688999985  22110                 0111110   01123457899


Q ss_pred             EeecCCCCCeEEEEEEeCCCC-------c--eeeeeeEEEEcCCCCC--------cccceeccCCcceeecCCCceEEEE
Q psy14540         66 ISSVRVEDSGIYQCTATNRVG-------S--QTHSADMRVYDAPGQP--------QDVKLVTSNSRSIKVHSGDRAGVQC  128 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~~~-------~--~~~~~~l~v~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~l~C  128 (291)
                      |.+++.+|+|.|.|.+.+..|       .  ....+.|.|...+...        .........+....+.+|+.++|.|
T Consensus        82 I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C  161 (257)
T 1f3r_B           82 MNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSC  161 (257)
T ss_dssp             EESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEE
T ss_pred             ECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEE
Confidence            999999999999999997643       1  1234567776543100        0011112234456788999999999


Q ss_pred             EeeCCCCCceeEEeE
Q psy14540        129 LVTKGDPPLTISWLK  143 (291)
Q Consensus       129 ~~~~~~p~~~~~W~~  143 (291)
                      .+ .+.|.+.+.|++
T Consensus       162 ~~-~~~~~~~v~W~k  175 (257)
T 1f3r_B          162 KG-SQNINNYLAWYQ  175 (257)
T ss_dssp             EC-SSCCBTCEEEEE
T ss_pred             EE-CCcCCCcEEEEE
Confidence            98 677778999999

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.87  E-value=3e-21  Score=146.90  Aligned_cols=198  Identities=15%  Similarity=0.213  Sum_probs=123.8

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC------CCee-Eec-----eEE-eeccceEEEEEEe
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA------GDRF-VMG-----QYM-SLHGDVISHVNIS   67 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~------~~~~-~~~-----~~~-~~~~~~~~~l~i~   67 (291)
                      +.+...|..+.+.+|++++|.|.+.+ +.+.+.|+|.  +....      .... ...     +.. .......++|.|.
T Consensus        28 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~  106 (270)
T 3qib_D           28 MKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQ  106 (270)
T ss_dssp             CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEES
T ss_pred             eeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEEC
Confidence            45677788889999999999999865 6678999982  21110      0000 000     111 1112345789999


Q ss_pred             ecCCCCCeEEEEEEeCCC----CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEe
Q psy14540         68 SVRVEDSGIYQCTATNRV----GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWL  142 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~  142 (291)
                      +++.+|+|.|.|.+.+..    ......+.+.|.........+......+....+..|+.++|.|.+....|.+ .+.|+
T Consensus       107 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  186 (270)
T 3qib_D          107 SSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  186 (270)
T ss_dssp             SCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEE
Confidence            999999999999998532    2233445677775322111111121222333455699999999995447766 89999


Q ss_pred             ECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-CeeEEEE
Q psy14540        143 KNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SGNYTCV  221 (291)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~  221 (291)
                      ++|..+.......         ...+..+..++.|.|..                    .+.|.|.....+| +|.|+|.
T Consensus       187 k~g~~l~~~~~~~---------~~~~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~~g~YtC~  237 (270)
T 3qib_D          187 VNGKEVHSGVCTD---------PQPLKEQPALNDSRYAL--------------------SSRLRVSATFWQNPRNHFRCQ  237 (270)
T ss_dssp             ETTEEECTTEEEC---------SSCEESCTTSSSCCEEE--------------------EEEEEEEHHHHHSTTCEEEEE
T ss_pred             ECCEECCCCcccc---------cccccccccCCCCCEEE--------------------EEEEEEcHHHhccCCCeEEEE
Confidence            9998886432110         01112234445666765                    2457778777777 9999999


Q ss_pred             eeeCCccCC
Q psy14540        222 ASNTVASDN  230 (291)
Q Consensus       222 ~~~~~~~~~  230 (291)
                      |.|......
T Consensus       238 v~~~~l~~~  246 (270)
T 3qib_D          238 VQFYGLSEN  246 (270)
T ss_dssp             EEECCBCTT
T ss_pred             EEecCCCCc
Confidence            998875443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.87  E-value=2e-20  Score=140.96  Aligned_cols=209  Identities=19%  Similarity=0.252  Sum_probs=123.4

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC------------------CCeeEeceEEeeccceE
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA------------------GDRFVMGQYMSLHGDVI   61 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~------------------~~~~~~~~~~~~~~~~~   61 (291)
                      +++..|....+.+|++++|.|.+.+.+  .+.+.|+|.  +..+.                  ..++..   ........
T Consensus         3 ~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~   79 (253)
T 3uzq_A            3 KLLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATI---TADTSSNT   79 (253)
T ss_dssp             CCEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEE---EEETTTTE
T ss_pred             eeEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEE---EeecCCCe
Confidence            356778888999999999999998743  678999982  22111                  011111   11122345


Q ss_pred             EEEEEeecCCCCCeEEEEEEeCCCCce-eeeeeEEEEcCCC--------CCcccceeccCCcceeecCCCceEEEEEeeC
Q psy14540         62 SHVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPG--------QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTK  132 (291)
Q Consensus        62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~l~v~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~  132 (291)
                      ++|.|.+++.+|+|.|.|.+.+..+.. .....|.|...+.        .+.........+....+.+|+.++|.|.+ .
T Consensus        80 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-~  158 (253)
T 3uzq_A           80 AYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRA-S  158 (253)
T ss_dssp             EEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEE-S
T ss_pred             EEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEe-c
Confidence            779999999999999999998755443 3456677764200        00001122233455788899999999999 5


Q ss_pred             CCCCc----eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEe
Q psy14540        133 GDPPL----TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIA  208 (291)
Q Consensus       133 ~~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~  208 (291)
                      +.+.+    .+.|++++...  ...            +.+....     .+      . ......+..........|.|.
T Consensus       159 ~~~~~~~~~~v~W~r~~~~~--~~~------------~~~~~~~-----~~------~-~~~~~r~~~~~~~~~~~L~I~  212 (253)
T 3uzq_A          159 ENVDRYGNSFMHWYQQKAGQ--PPK------------LLIYRAS-----NL------E-SGIPARFSGSGSRTDFTLTIN  212 (253)
T ss_dssp             SCCEETTEECEEEEEECTTS--CCE------------EEEETTT-----EE------C-TTCCTTEEEEEETTEEEEEES
T ss_pred             CccccCCCcEEEEEEECCCC--CCE------------EEEEEcc-----cc------C-CccCCceEEeCCCCEEEEEEC
Confidence            66665    99999853110  000            0000000     00      0 000011222222335678999


Q ss_pred             eeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCC
Q psy14540        209 TLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPH  242 (291)
Q Consensus       209 ~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~  242 (291)
                      ++..+|+|.|.|.+.|.... -..-..|.|...+.
T Consensus       213 ~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~  247 (253)
T 3uzq_A          213 PVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPLE  247 (253)
T ss_dssp             SCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC--
T ss_pred             CCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCCC
Confidence            99999999999999876522 23344566665443

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.87  E-value=1.3e-20  Score=142.71  Aligned_cols=158  Identities=16%  Similarity=0.263  Sum_probs=113.0

Q ss_pred             ceeecceeeeecCCcEEEEEEe-cCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      +...+....+.+|+.+.|.|.+ .+.+.+.+.|++++..+...            .....|.|.+++..|+|.|+|.+.+
T Consensus        85 ~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~~~n  152 (262)
T 3rjd_A           85 LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF------------HWNSNLTILKTNISHNGTYHCSGMG  152 (262)
T ss_dssp             EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE------------EECCCEEESSCCGGGCEEEEEEEES
T ss_pred             eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc------------CCCCeEEEEECChhhCEEEEEEEeC
Confidence            4455666778999999999999 55778899999999876411            0113588999999999999999998


Q ss_pred             CCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-c----eeEEeECCEeccCCCceEEec
Q psy14540         84 RVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-L----TISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        84 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~----~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      ..+.....+.+.|......|    .....+ ...+.+|+.+.|.|.+ .+.|. +    .+.|++++..+...       
T Consensus       153 ~~~~~~~~~~l~V~~~~~~p----~~~~~~-~~~~~~g~~~~l~C~~-~~~p~~p~~~~~~~w~~~~~~~~~~-------  219 (262)
T 3rjd_A          153 KHRYTSAGISVTVKELFPAP----VLNASV-TSPLLEGNLVTLSCET-KLLLQRPGLQLYFSFYMGSKTLRGR-------  219 (262)
T ss_dssp             SSEEEEECEEEEEECSSCCC----EEEESS-CSSEETTCCEEEEEEC-CCCCC-----EEEEEEETTEEEEEE-------
T ss_pred             CCCccccceEEEeccCCCCC----eEeecC-ceeecCCCeEEEEeEc-ccCCCCCCccEEEEEEeCCcEeccc-------
Confidence            88777777888887653222    111112 3567899999999999 56654 4    37899998876421       


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                        .....|.|..+..+|.|.|+|.|.|..|.
T Consensus       220 --~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~  248 (262)
T 3rjd_A          220 --NTSSEYQILTARREDSGLYWCEAATEDGN  248 (262)
T ss_dssp             --ESCCEEEESSCCGGGCEEEEEEEEETTSS
T ss_pred             --CCCceEEEEEechhhCeEEEEEEEcccCc
Confidence              11345667777777777777777766664

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.86  E-value=3e-20  Score=140.07  Aligned_cols=127  Identities=22%  Similarity=0.364  Sum_probs=86.9

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC------------------CCeeEeceEEeeccceEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA------------------GDRFVMGQYMSLHGDVISH   63 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~   63 (291)
                      +..|....+.+|++++|.|.+.+.+  .+.+.|+++  +..+.                  ..++...   .......++
T Consensus         4 l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~   80 (256)
T 1nqb_A            4 LQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLT---VDKPSSTAY   80 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEE---EETTTTEEE
T ss_pred             EECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEE---EecCCCEEE
Confidence            4567778999999999999998764  678999994  22210                  0111110   011234578


Q ss_pred             EEEeecCCCCCeEEEEEEeCCCCc-----eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-
Q psy14540         64 VNISSVRVEDSGIYQCTATNRVGS-----QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-  137 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-  137 (291)
                      |.|.+++.+|+|.|.|.+.+..+.     ....+.|.|...+       .....+....+.+|+.++|.|.+ .+.|.+ 
T Consensus        81 L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~-------~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~  152 (256)
T 1nqb_A           81 MQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDI-------ELTQTPLSLPVSLGDQASISCRS-SQSIVHS  152 (256)
T ss_dssp             EEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCC-------CEEEECSEEEECTTCCEEEEEEE-SSCCBCT
T ss_pred             EEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccc-------cEEecCcEEEEecCCcEEEEeEe-cCccccc
Confidence            999999999999999999977542     2234566665332       11123445678899999999999 566654 


Q ss_pred             ----eeEEeE
Q psy14540        138 ----TISWLK  143 (291)
Q Consensus       138 ----~~~W~~  143 (291)
                          .+.|++
T Consensus       153 ~~~~~v~W~k  162 (256)
T 1nqb_A          153 NGNTYLEWYL  162 (256)
T ss_dssp             TSCBCEEEEE
T ss_pred             ccceEEEEEE
Confidence                999999

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.86  E-value=1.8e-20  Score=140.26  Aligned_cols=140  Identities=18%  Similarity=0.219  Sum_probs=89.6

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC-----CCeeE---eceEEeeccceEEEEEEeecCCC
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA-----GDRFV---MGQYMSLHGDVISHVNISSVRVE   72 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-----~~~~~---~~~~~~~~~~~~~~l~i~~~~~~   72 (291)
                      +.|...|..+.+.+|++++|.|.+.+.+.+.+.|+++.  ....     .....   ..+.........++|.|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE   81 (242)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH
Confidence            46778888899999999999999998888899999953  1110     00000   00111111234567999999999


Q ss_pred             CCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCC-------cccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEEe
Q psy14540         73 DSGIYQCTATNRVGS-QTHSADMRVYDAPGQP-------QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWL  142 (291)
Q Consensus        73 d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~  142 (291)
                      |+|.|.|.+.+..+. ....+.|.|...+..+       ...... ..+....+.+|+.++|.|.+ .+.|  .+.+.|+
T Consensus        82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~  159 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQL-QESGPSLVKPSQTLSLTCSV-TGDSITSDYXSXI  159 (242)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEE-EEECCSEECTTSCEEEEEEE-ESSCGGGSCEEEE
T ss_pred             HCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceee-ecCCcceecCCCeEEEEEEE-EccccCCcceeeE
Confidence            999999999876432 2334567776544200       001111 11222458899999999999 4554  5789999


Q ss_pred             EC
Q psy14540        143 KN  144 (291)
Q Consensus       143 ~~  144 (291)
                      ++
T Consensus       160 k~  161 (242)
T 2znx_A          160 RK  161 (242)
T ss_dssp             EE
T ss_pred             ee
Confidence            85

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.86  E-value=5.2e-21  Score=141.04  Aligned_cols=136  Identities=19%  Similarity=0.308  Sum_probs=90.1

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC------------------CCeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA------------------GDRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~l   64 (291)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+|+  +..+.                  ..++...   .......++|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~L   81 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFF---LETSATTAYL   81 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEE---EEGGGTEEEE
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEE---EecCCCEEEE
Confidence            456677899999999999998754  678999996  33221                  0111110   0112335789


Q ss_pred             EEeecCCCCCeEEEEEEeCCCCc----eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-ee
Q psy14540         65 NISSVRVEDSGIYQCTATNRVGS----QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TI  139 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~  139 (291)
                      .|.+++.+|+|.|+|.+.+..+.    ....+.|.|...+..+  ....... ....+.+|+.++|.|.+.++.|.+ .+
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~--P~i~~~~-~~~~~~~g~~v~L~C~~~g~~P~p~~v  158 (219)
T 1c1e_H           82 QINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTP--PSVYPLA-PGSAAQTNSMVTLGCLVKGYFPEPVTV  158 (219)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBC--CEEEEEC-CCSSSCCSSEEEEEEEEEEEBSSCCEE
T ss_pred             EECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCC--CeEEEec-CccccccCCeEEEEEEcccccCCCeEE
Confidence            99999999999999999876531    2235567776532111  1111111 122456899999999995438888 99


Q ss_pred             EEeECCEec
Q psy14540        140 SWLKNGLPI  148 (291)
Q Consensus       140 ~W~~~~~~~  148 (291)
                      .|++++..+
T Consensus       159 ~W~~~g~~~  167 (219)
T 1c1e_H          159 TWNSGSLSS  167 (219)
T ss_dssp             EEGGGTBCT
T ss_pred             EEEeCCccc
Confidence            999998764

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.86  E-value=4.2e-21  Score=145.16  Aligned_cols=144  Identities=19%  Similarity=0.249  Sum_probs=83.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecCC-CeeE-------e------ceE-EeeccceEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAG-DRFV-------M------GQY-MSLHGDVISHV   64 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~-~~~~-------~------~~~-~~~~~~~~~~l   64 (291)
                      +|.|...|..+.+.+|++++|.|.+.+.+.+.+.|++.  +..... ....       .      ... ........++|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            57888889999999999999999998877889999982  211100 0000       0      000 01112234679


Q ss_pred             EEeecCCCCCeEEEEEEeCCCC---ceeeeeeEEEEcCCCCCcc----------cceeccCCcceeecCCCceEEEEEee
Q psy14540         65 NISSVRVEDSGIYQCTATNRVG---SQTHSADMRVYDAPGQPQD----------VKLVTSNSRSIKVHSGDRAGVQCLVT  131 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~l~C~~~  131 (291)
                      .|.+++.+|+|.|.|.+.+..+   .......|.|......+..          .......+....+.+|+.++|.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            9999999999999999987655   3444566777764322210          11233445567889999999999885


Q ss_pred             CCCCCceeEEeECC
Q psy14540        132 KGDPPLTISWLKNG  145 (291)
Q Consensus       132 ~~~p~~~~~W~~~~  145 (291)
                      ...+.+.+.|++++
T Consensus       162 ~~~~~~~v~W~k~~  175 (259)
T 3omz_A          162 TSWWSYYIFWYKRL  175 (259)
T ss_dssp             CCCSSCEEEEEEEC
T ss_pred             CccCCceEEEeeeC
Confidence            44578899999853

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.86  E-value=1.9e-20  Score=140.55  Aligned_cols=141  Identities=15%  Similarity=0.235  Sum_probs=89.2

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCC-----CCeeEEEECC--eecC-----CCeeE---eceEEeeccceEEEEEEe
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDG--YPLA-----GDRFV---MGQYMSLHGDVISHVNIS   67 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~~-----~~~~~---~~~~~~~~~~~~~~l~i~   67 (291)
                      ..+...|..+.+.+|++++|.|.+.+.+     .+.+.|+++.  ..+.     .....   ..+.........++|.|.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~   81 (247)
T 1svz_A            2 ILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS   81 (247)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred             CcEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEEC
Confidence            3567778889999999999999998866     6889999842  2110     00000   011111122345679999


Q ss_pred             ecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCC-------CcccceeccCCcceeecCCCceEEEEEeeCCCC--Cc
Q psy14540         68 SVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQ-------PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PL  137 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~  137 (291)
                      +++.+|+|.|.|.+.+..+. ......|.|...+..       +........ +....+.+|+.++|.|.+. +.+  .+
T Consensus        82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~-~~~~~~~  159 (247)
T 1svz_A           82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQ-SGPELKKPGETVKISCKAT-NYAFTDY  159 (247)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEE-CCCEEECTTCCEEEEEEEE-SSCGGGS
T ss_pred             CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeC-CCceeecCCCcEEEEEEEc-CcccCCc
Confidence            99999999999999876443 233456777654310       001111112 2234588999999999994 543  57


Q ss_pred             eeEEeECC
Q psy14540        138 TISWLKNG  145 (291)
Q Consensus       138 ~~~W~~~~  145 (291)
                      .+.|++++
T Consensus       160 ~v~W~k~~  167 (247)
T 1svz_A          160 SMHWVKQA  167 (247)
T ss_dssp             CEEEEEEC
T ss_pred             EEEEEEeC
Confidence            89999963

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.86  E-value=2.5e-20  Score=140.22  Aligned_cols=141  Identities=18%  Similarity=0.271  Sum_probs=90.6

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCe-----ecC--CCee---EeceEEeeccceEEEEEEeecCCC
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY-----PLA--GDRF---VMGQYMSLHGDVISHVNISSVRVE   72 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-----~~~--~~~~---~~~~~~~~~~~~~~~l~i~~~~~~   72 (291)
                      +.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|+..     .+.  ....   ...+.........++|.|.+++.+
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            456677888889999999999999998888999998531     100  0000   001111122334568999999999


Q ss_pred             CCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCC------------cccceeccCCcceeecCCCceEEEEEeeCCCC--Cc
Q psy14540         73 DSGIYQCTATNRVGS-QTHSADMRVYDAPGQP------------QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PL  137 (291)
Q Consensus        73 d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~  137 (291)
                      |+|.|.|.+.+..+. ......|.|...+...            .........+....+.+|+.++|.|.+ .+.+  .+
T Consensus        85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~  163 (250)
T 3esu_F           85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKD-SGYAFSSS  163 (250)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEEC-CSTTGGGS
T ss_pred             hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEe-cCCcccCC
Confidence            999999999876543 2334456665431000            000111122344678899999999998 5655  78


Q ss_pred             eeEEeEC
Q psy14540        138 TISWLKN  144 (291)
Q Consensus       138 ~~~W~~~  144 (291)
                      .+.|+++
T Consensus       164 ~v~W~k~  170 (250)
T 3esu_F          164 WMNWVKQ  170 (250)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999996

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.86  E-value=4.4e-21  Score=146.61  Aligned_cols=200  Identities=15%  Similarity=0.182  Sum_probs=119.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC--------------CCeeEeceEEeeccceEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA--------------GDRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~l~   65 (291)
                      .+.+...|..+.+.+|++++|.|.+.+.+.+.+.|++++  ....              ...+.............++|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            356677788899999999999999987777889999853  1110              000000001111123457899


Q ss_pred             EeecCCCCCeEEEEEEeCCCC------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ce
Q psy14540         66 ISSVRVEDSGIYQCTATNRVG------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LT  138 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~  138 (291)
                      |.+++.+|+|.|+|.+.+..+      .....+.|.|......+.........+....+.+|+.++|.|.+...+|. +.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  183 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE  183 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred             EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence            999999999999999987321      11234567776532100011111112222334578999999999544464 79


Q ss_pred             eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecC-CCee
Q psy14540        139 ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTG-HSGN  217 (291)
Q Consensus       139 ~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-~~g~  217 (291)
                      +.|++++..+........         ..+..+.....|.|..                    .+.|.|...... ++|.
T Consensus       184 v~W~k~g~~l~~~~~~~~---------~~~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~~~~  234 (279)
T 2wbj_D          184 LSWWVNGKEVHSGVSTDP---------QPLKEQPALNDSRYSL--------------------SSRLRVSATFWQNPRNH  234 (279)
T ss_dssp             EEEEETTEECCTTEEECS---------SCEESSTTSTTCCEEE--------------------EEEEECCSTTTTCTTCE
T ss_pred             EEEEECCEECCCCccccc---------ccccccccCCCCcEEE--------------------EEEEEEChHHhccCCCE
Confidence            999999988754321000         0011122234455544                    234666665554 4678


Q ss_pred             EEEEeeeCCccCC
Q psy14540        218 YTCVASNTVASDN  230 (291)
Q Consensus       218 y~C~~~~~~~~~~  230 (291)
                      |+|.|.|......
T Consensus       235 YtC~v~n~~~~~~  247 (279)
T 2wbj_D          235 FRCQVQFYGLSEN  247 (279)
T ss_dssp             EEEEEEECCBCTT
T ss_pred             EEEEEEeCCCCCC
Confidence            9999888765443

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.86  E-value=7.7e-21  Score=140.40  Aligned_cols=137  Identities=20%  Similarity=0.273  Sum_probs=88.7

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC--------------------CCeeEeceEEeeccceEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA--------------------GDRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~   62 (291)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+++.  ....                    ..++...   .......+
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~   81 (222)
T 1q9r_B            5 VESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTIS---RDNSQSIL   81 (222)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEE---EETTTTEE
T ss_pred             ecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEE---EECCCCeE
Confidence            346667899999999999998754  6789999843  2110                    0111110   01113356


Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCC-----ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVG-----SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL  137 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~  137 (291)
                      +|+|.+++.+|+|.|.|.+.+..+     .....+.|.|...+..+  +......+ ...+.+|+.++|.|.+.+.+|.+
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~--P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p  158 (222)
T 1q9r_B           82 YLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTP--PSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEP  158 (222)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBC--CEEEEECC-CSCCCCSSEEEEEEEEEEEBSSC
T ss_pred             EEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCC--CeEEEccc-cccccCCCcEEEEEEEccEECCC
Confidence            899999999999999999987653     22344567776532111  11111111 12356799999999995445877


Q ss_pred             -eeEEeECCEecc
Q psy14540        138 -TISWLKNGLPIL  149 (291)
Q Consensus       138 -~~~W~~~~~~~~  149 (291)
                       .+.|+++|..+.
T Consensus       159 ~~v~W~~~g~~~~  171 (222)
T 1q9r_B          159 VTVTWNSGSLSSG  171 (222)
T ss_dssp             CEEEEGGGTBCTT
T ss_pred             CEEEEecCCeEcc
Confidence             999999987653

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.86  E-value=3.7e-21  Score=142.20  Aligned_cols=188  Identities=19%  Similarity=0.270  Sum_probs=114.8

Q ss_pred             ecceeeeecCCcEEEEEEecCCCCC---eeEEEECCeecC-----C------------CeeEec--eEEeeccceEEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNPTP---HISWKLDGYPLA-----G------------DRFVMG--QYMSLHGDVISHVN   65 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~-----~------------~~~~~~--~~~~~~~~~~~~l~   65 (291)
                      .|..+.+..|++++|.|.+.+.+.+   .|.|+|++..+.     .            .+....  ..........++|.
T Consensus         7 vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~   86 (225)
T 4fmk_A            7 VLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLA   86 (225)
T ss_dssp             CCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEE
T ss_pred             eCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEE
Confidence            3556788999999999999875554   489999764321     0            000000  00011122336799


Q ss_pred             EeecCCCCCeEEEEEEeCCCCceee-eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540         66 ISSVRVEDSGIYQCTATNRVGSQTH-SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |.+++.+|+|.|+|.+.+..+.... ...+.+...+..       ...+.......++.+.+.|.+..+.|.+.+.|+++
T Consensus        87 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~  159 (225)
T 4fmk_A           87 FRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPEN-------HAEAQEVTIGPQSVAVARCVSTGGRPPARITWISS  159 (225)
T ss_dssp             ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEE-------EEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECS
T ss_pred             EccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCce-------eecccceeecceeeeeeeeeecCCCCCCEEEEEEC
Confidence            9999999999999999876554333 333444433311       11122234556778888888767889999999998


Q ss_pred             CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      +..+.......                 ....|.|.-                    .+.|.|.++..+|+|.|+|.|.|
T Consensus       160 ~~~~~~~~~~~-----------------~~~~~~~~~--------------------~s~L~i~~~~~~d~g~YtC~a~N  202 (225)
T 4fmk_A          160 LGGEAKDTQEP-----------------GIQAGTVTI--------------------ISRYSLVPVGRADGVKVTCRVEH  202 (225)
T ss_dssp             SCCEEEEEEEE-----------------CSSTTCEEE--------------------EEEEEECCCGGGTTCEEEEEEEC
T ss_pred             CccccCCcceE-----------------EecCCCEEE--------------------EEEEEEeeCCHHHCCEEEEEEEc
Confidence            76543211111                 111222221                    34688888888888888888888


Q ss_pred             CCccCCc--eeEEEEec
Q psy14540        225 TVASDNH--SSNLRVNV  239 (291)
Q Consensus       225 ~~~~~~~--~~~l~v~~  239 (291)
                      ..+....  ++.|.|.+
T Consensus       203 ~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          203 ESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             TTCSSCEEEEEECCBTT
T ss_pred             CCCCeEEEEEEEEEEEE
Confidence            7765544  44455544

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.86  E-value=2.4e-20  Score=140.78  Aligned_cols=137  Identities=15%  Similarity=0.286  Sum_probs=86.0

Q ss_pred             eeecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC-----CCee---EeceEEeeccceEEEEEEeecCCCC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA-----GDRF---VMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~-----~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      +..|....+.+|++++|.|.+.+.  +.+.+.|+|..  ....     ....   ...+.........++|.|.+++.+|
T Consensus         6 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   85 (256)
T 3ux9_B            6 LTQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSED   85 (256)
T ss_dssp             CBCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             EecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhh
Confidence            345666889999999999999875  67889999842  1110     0000   0011111122345789999999999


Q ss_pred             CeEEEEEEeCCCCc---eeeeeeEEEEcCCCCCc--------------ccceeccCCcceeecCCCceEEEEEeeCCCC-
Q psy14540         74 SGIYQCTATNRVGS---QTHSADMRVYDAPGQPQ--------------DVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-  135 (291)
Q Consensus        74 ~G~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~--------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-  135 (291)
                      +|.|.|.+.+..+.   ....+.|.|...+....              ..... ..+....+.+|+.++|.|.+ .+.+ 
T Consensus        86 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~G~~v~L~C~~-~~~~~  163 (256)
T 3ux9_B           86 EADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQL-VESGGGLVQPGGSLRLSCAA-SGFTF  163 (256)
T ss_dssp             CEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEE-EEECCEEECTTCCEEEEEEE-ESSCG
T ss_pred             CEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeE-EcCCCeEEcCCCeEEEEEEE-eCCcc
Confidence            99999999875432   33445677765442110              00011 22233558899999999999 4545 


Q ss_pred             -CceeEEeEC
Q psy14540        136 -PLTISWLKN  144 (291)
Q Consensus       136 -~~~~~W~~~  144 (291)
                       .+.+.|+++
T Consensus       164 ~~~~v~W~r~  173 (256)
T 3ux9_B          164 SSYAMSWVRQ  173 (256)
T ss_dssp             GGSEEEEEEE
T ss_pred             cccEEEEEEE
Confidence             789999986

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.86  E-value=2.8e-20  Score=140.47  Aligned_cols=137  Identities=16%  Similarity=0.254  Sum_probs=89.0

Q ss_pred             cceeecceeeeecCCcEEEEEEecC--CCCCeeEEEECC--eecC-----------------CCeeEeceEEeeccceEE
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YPLA-----------------GDRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~   62 (291)
                      ..+..|....+.+|++++|.|.+.+  .+.+.+.|++..  ....                 ..++...   .......+
T Consensus        10 v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~   86 (257)
T 3gkz_A           10 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISIT---RDTSKNQV   86 (257)
T ss_dssp             EEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEE---EEGGGTEE
T ss_pred             EEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEE---EecCCceE
Confidence            3456677788999999999999987  347789999832  1100                 0111110   11123456


Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCC----ceeeeeeEEEEcCCC-------CCcccceeccCCcceeecCCCceEEEEEee
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVG----SQTHSADMRVYDAPG-------QPQDVKLVTSNSRSIKVHSGDRAGVQCLVT  131 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~----~~~~~~~l~v~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  131 (291)
                      +|.|.+++.+|+|.|.|.+.+..+    .....+.|.|...+.       ...........+....+.+|+.++|.|.+ 
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~-  165 (257)
T 3gkz_A           87 YLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSA-  165 (257)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEE-
T ss_pred             EEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEE-
Confidence            899999999999999999987521    123445677765411       00011123344555788999999999999 


Q ss_pred             CCCCCc-eeEEeEC
Q psy14540        132 KGDPPL-TISWLKN  144 (291)
Q Consensus       132 ~~~p~~-~~~W~~~  144 (291)
                      .+.+.+ .+.|+++
T Consensus       166 ~~~~~~~~v~W~k~  179 (257)
T 3gkz_A          166 SSSVSSSHLYWYQQ  179 (257)
T ss_dssp             SSCCCGGGEEEEEE
T ss_pred             ccCccceEEEEEEE
Confidence            566766 9999984

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.86  E-value=6.9e-22  Score=153.40  Aligned_cols=175  Identities=15%  Similarity=0.205  Sum_probs=122.1

Q ss_pred             ecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540          8 KFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      .+....+..|+.+.|.|... +.|.+.+.|++++..+........   .......+.|.|.++...|.|.|+|.+.+..+
T Consensus       120 ~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~---~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~  196 (308)
T 4fom_A          120 GPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFP---NETATIISQYKLFPTRFARGRRITCVVKHPAL  196 (308)
T ss_dssp             CSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECT---TSCEEEEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred             ccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceee---eecccccccceEEeeeecCCccEEEEEEccCC
Confidence            34445566789999999864 588999999999987763222111   11122346799999999999999999998776


Q ss_pred             ceeee--eeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCce
Q psy14540         87 SQTHS--ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYT  163 (291)
Q Consensus        87 ~~~~~--~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~  163 (291)
                      .....  +.|.|...|      ...........+..|+.++|.|.+ .|.|.+ .+.|++++..+......      ...
T Consensus       197 ~~~~~~~~~l~V~~~P------~~~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~~v~W~k~~~~~~~~~~~------~~~  263 (308)
T 4fom_A          197 EKDIRYSFILDIQYAP------EVSVTGYDGNWFVGRKGVNLKCNA-DANPPPFKSVWSRLDGQWPDGLLA------SDN  263 (308)
T ss_dssp             SSCEEEEEECCCCEEE------EECCBCCCSCEETTCCSCEEECCE-EEESCEEEEECCBSSSCCCSSCBC------STT
T ss_pred             CCceEEeEEEEEecCC------eeEEcccceeeeeccccEEEEEEE-ecCCCCcEEEEEECCeECCCcEEE------cCC
Confidence            54443  344443332      111223334566788999999999 688877 69999998877543211      123


Q ss_pred             EEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540        164 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  198 (291)
Q Consensus       164 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~  198 (291)
                      ..+.|..+..+|+|.|+|.|.|..|.....+.|.+
T Consensus       264 ~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V  298 (308)
T 4fom_A          264 TLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYI  298 (308)
T ss_dssp             EEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCE
T ss_pred             eEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEE
Confidence            45778889999999999999999987666555443

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.86  E-value=4.8e-20  Score=141.01  Aligned_cols=134  Identities=16%  Similarity=0.346  Sum_probs=88.6

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~   62 (291)
                      +...|....+.+|++++|.|.+.+.+  .+.+.|++++  ..+.                  ..++..   ........+
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~  105 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATF---TTDTSSNTA  105 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEE---EEETTTTEE
T ss_pred             EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEE---EEecCCCeE
Confidence            35667788999999999999998754  5789999953  1110                  011111   001123457


Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCC---c--eeeeeeEEEEcCCCCC--------cccceeccCCcceeecCCCceEEEEE
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVG---S--QTHSADMRVYDAPGQP--------QDVKLVTSNSRSIKVHSGDRAGVQCL  129 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~---~--~~~~~~l~v~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~l~C~  129 (291)
                      +|.|.+++.+|+|.|.|.+.+..+   .  ....+.|.|...+...        .........+....+.+|+.++|.|.
T Consensus       106 sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  185 (282)
T 1qok_A          106 YLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCS  185 (282)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEE
T ss_pred             EEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEE
Confidence            899999999999999999997754   1  2234567777654200        00111222344567889999999999


Q ss_pred             eeCCCCCceeEEeE
Q psy14540        130 VTKGDPPLTISWLK  143 (291)
Q Consensus       130 ~~~~~p~~~~~W~~  143 (291)
                      + .+.+ +.+.|++
T Consensus       186 ~-~~~~-~~v~W~k  197 (282)
T 1qok_A          186 A-SSSV-SYMHWFQ  197 (282)
T ss_dssp             E-SSCC-SCCEEEE
T ss_pred             e-cCCC-ceEEEEE
Confidence            9 6777 8999999

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.85  E-value=7.3e-20  Score=138.59  Aligned_cols=137  Identities=18%  Similarity=0.275  Sum_probs=91.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCC------CCeeEEEEC--CeecC-------------CCeeEeceEEeeccce
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP------TPHISWKLD--GYPLA-------------GDRFVMGQYMSLHGDV   60 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~------~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~   60 (291)
                      .+.+...|..+.+.+|++++|.|.+.+.+      .+.+.|+++  +..+.             ..++..     .....
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~-----~~~~~   79 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTG-----SGSGT   79 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-----EEETT
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEE-----ecCCC
Confidence            46778888889999999999999998766      678999984  22111             112211     11234


Q ss_pred             EEEEEEeecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCC-------------CCcccceeccCCcceeecCCCceEE
Q psy14540         61 ISHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPG-------------QPQDVKLVTSNSRSIKVHSGDRAGV  126 (291)
Q Consensus        61 ~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~-------------~~~~~~~~~~~~~~~~~~~g~~~~l  126 (291)
                      .++|.|.+++.+|+|.|.|.+.+..+. ....+.|.|...+.             .+........ +....+.+|+.++|
T Consensus        80 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L  158 (264)
T 2gjj_A           80 DFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQ-SGPEVVKTGASVKI  158 (264)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEE-CCCEEECTTCCEEE
T ss_pred             EEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeC-CCCEEEcCCCcEEE
Confidence            578999999999999999999876432 23345777876531             0001111112 22346889999999


Q ss_pred             EEEeeCCCC--CceeEEeECC
Q psy14540        127 QCLVTKGDP--PLTISWLKNG  145 (291)
Q Consensus       127 ~C~~~~~~p--~~~~~W~~~~  145 (291)
                      .|.+. +.+  .+.+.|+++.
T Consensus       159 ~C~~~-~~~~~~~~v~W~r~~  178 (264)
T 2gjj_A          159 SCKAS-GYSFTGYFINWVKKN  178 (264)
T ss_dssp             EEEEE-SSCGGGSEEEEEEEC
T ss_pred             EEEEe-CCccCCeEEEEEEEC
Confidence            99994 554  3799999963

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.85  E-value=8.7e-21  Score=138.89  Aligned_cols=135  Identities=20%  Similarity=0.283  Sum_probs=87.7

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC-----------------CCeeEeceEEeeccceEEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA-----------------GDRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~   65 (291)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+|+  +....                 ..++...   .......++|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~   81 (210)
T 3d9a_H            5 QESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISIT---RDTSKNQYYLD   81 (210)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEE---EEGGGTEEEEE
T ss_pred             ecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEE---ecCCCCEEEEE
Confidence            346777899999999999998754  478999985  22110                 1111110   01122356899


Q ss_pred             EeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeEC
Q psy14540         66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKN  144 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~  144 (291)
                      |.+++.+|+|.|.|.+.+.. .......|.|...+..+  ....... ....+.+|+.++|.|.+.+.+|.+ .+.|+++
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~--P~v~~~~-~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  157 (210)
T 3d9a_H           82 LNSVTTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTP--PSVYPLA-PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG  157 (210)
T ss_dssp             ECSCCGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBC--CEEEEEC-CTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ECCCCcccCEEEEEEEecCc-ccccceEEEeccCCCCC--CEEEEec-CCcccccCCcEEEEEEEeeEecCCcEEEEeeC
Confidence            99999999999999998753 22334566776422111  1111111 123456899999999995445877 9999998


Q ss_pred             CEec
Q psy14540        145 GLPI  148 (291)
Q Consensus       145 ~~~~  148 (291)
                      +..+
T Consensus       158 ~~~~  161 (210)
T 3d9a_H          158 SLSS  161 (210)
T ss_dssp             TBCT
T ss_pred             Cccc
Confidence            8754

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.85  E-value=2.4e-21  Score=141.45  Aligned_cols=185  Identities=14%  Similarity=0.236  Sum_probs=108.9

Q ss_pred             Ccc-eeecceee-eecCCcEEEEEEecCCC----CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCC
Q psy14540          3 PQL-IYKFIQQT-LQPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDS   74 (291)
Q Consensus         3 p~~-~~~~~~~~-v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~   74 (291)
                      |.+ +..|.... +.+|++++|.|.+.+.+    ...|.|++++..+.......... ...+  ...+.|.|.+++.+|+
T Consensus         2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~-~~~~~~~~~~~L~I~~~~~~D~   80 (207)
T 2vol_A            2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREE-QFNSTFRSVSELPIMHQDWLNG   80 (207)
T ss_dssp             CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCE-ETTTEEEEEEEEECCHHHHHTT
T ss_pred             CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcC-cCCCcEEEEEEEEEehhHcCCC
Confidence            444 44455444 89999999999998753    34899999987665321111100 0001  1235799999999999


Q ss_pred             eEEEEEEeCCCCceeeeeeEEEE-cCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCC
Q psy14540         75 GIYQCTATNRVGSQTHSADMRVY-DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDA  152 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~~~~l~v~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~  152 (291)
                      |.|+|.+.+..+.......+.+. .....|  .... ..... ....|+.++|.|.+.+.+|. +.+.|+++|..+....
T Consensus        81 G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P--~v~~-~~~~~-~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~  156 (207)
T 2vol_A           81 KEFKCRVNSAAFPAPIEKTISKTKGRPKAP--QVYT-LPPPK-EQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYK  156 (207)
T ss_dssp             CCEEEEEECTTCSSCEEEEECCCCCCCBCC--EEEE-ECCCT-GGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEE
T ss_pred             CEEEEEEEccCCCCceEEEeccCCCCCcCC--eEEE-eCCCH-HHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcc
Confidence            99999999877643222222110 111111  1111 11111 12358999999999544665 4999999998864211


Q ss_pred             ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540        153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA  227 (291)
Q Consensus       153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  227 (291)
                      ..               .......|.|..                    .+.|.+.....+|.|.|+|.|.|...
T Consensus       157 ~~---------------~~~~~~~g~~~~--------------------~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          157 NT---------------QPIMDTDGSYFV--------------------YSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EC---------------CCEECTTSCEEE--------------------EEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             cC---------------CceECCCCCEEE--------------------EEEEEECHHHcCCCCEEEEEEECCCC
Confidence            00               000122334432                    23456666666778888888888763

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.85  E-value=6.1e-20  Score=138.56  Aligned_cols=206  Identities=17%  Similarity=0.268  Sum_probs=117.9

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISH   63 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~   63 (291)
                      +..+....+.+|++++|.|.+.+.+  .+.+.|++..  ..+.                  ..++..   ........++
T Consensus         6 v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~   82 (256)
T 3umt_A            6 LQQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAIL---TVDKSSSTAY   82 (256)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEE---EEEGGGTEEE
T ss_pred             EEccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEE---EEecCCCEEE
Confidence            3445567799999999999998755  6789999832  1110                  011111   0111234577


Q ss_pred             EEEeecCCCCCeEEEEEEeCC----CCceeeeeeEEEEcCCC---------CCcccceeccCCcceeecCCCceEEEEEe
Q psy14540         64 VNISSVRVEDSGIYQCTATNR----VGSQTHSADMRVYDAPG---------QPQDVKLVTSNSRSIKVHSGDRAGVQCLV  130 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~~~~----~~~~~~~~~l~v~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~  130 (291)
                      |.|.+++.+|+|.|.|.+.+.    .+.....+.|.|...+.         ...........+....+.+|+.++|.|.+
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~  162 (256)
T 3umt_A           83 LELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRA  162 (256)
T ss_dssp             EEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEE
T ss_pred             EEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEE
Confidence            999999999999999999876    23334456677765311         00001122233455788899999999999


Q ss_pred             eCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeee
Q psy14540        131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATL  210 (291)
Q Consensus       131 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  210 (291)
                       .+.|.+.+.|+++....    ...          +.+.....            ........+.+........|.|.++
T Consensus       163 -~~~~~~~v~W~k~~~~~----~~~----------~~~~~~~~------------~~~~~~~r~~~~~~~~~~~L~I~~v  215 (256)
T 3umt_A          163 -SQDIGSNLNWLQQKPDG----TIK----------RLIYATSS------------LDSGVPKRFSGSRSGSDYSLTISSL  215 (256)
T ss_dssp             -SSCCTTCEEEEEECTTC----CEE----------EEEETTTE------------ECTTSCTTEEEEEETTEEEEEECSC
T ss_pred             -ecCCCcEEEEEEECCCC----CcE----------EEEEeccc------------cCCccCCCEEEecCCCEEEEEECCC
Confidence             67777899999843100    000          00000000            0000001112222334567888888


Q ss_pred             ecCCCeeEEEEeeeCCc-cCCceeEEEEecCC
Q psy14540        211 STGHSGNYTCVASNTVA-SDNHSSNLRVNVPP  241 (291)
Q Consensus       211 ~~~~~g~y~C~~~~~~~-~~~~~~~l~v~~~p  241 (291)
                      ..+|+|.|.|.+.+... .-.....|.|..++
T Consensus       216 ~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          216 ESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             CGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             ChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence            88888888888877542 23344566666543

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.85  E-value=2e-21  Score=142.96  Aligned_cols=142  Identities=14%  Similarity=0.176  Sum_probs=89.5

Q ss_pred             CCcceeecceee--eecCCcEEEEEEecCC---C-CCeeEEEECCeecCCCeeEeceEEeecc---ceEEEEEEeecCCC
Q psy14540          2 HPQLIYKFIQQT--LQPGPPVSLKCIATGN---P-TPHISWKLDGYPLAGDRFVMGQYMSLHG---DVISHVNISSVRVE   72 (291)
Q Consensus         2 ~p~~~~~~~~~~--v~~g~~v~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~   72 (291)
                      +|.+.+.|....  +.+|++++|.|.+.+.   + .+.|.|+|++..+.......  .....+   ...+.|.|.+++.+
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~   86 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT--HREDYNSTIRVVSTLPIQHQDWM   86 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEE--EEETTTTEEEEEEEEECCHHHHH
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCccccc--ccccCCCeEEEEEEEEEcHHHcC
Confidence            566766665555  8899999999999875   3 37899999998765322111  000111   13467999999999


Q ss_pred             CCeEEEEEEeCCCCceeeeeeEEE-EcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEecc
Q psy14540         73 DSGIYQCTATNRVGSQTHSADMRV-YDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPIL  149 (291)
Q Consensus        73 d~G~y~C~~~~~~~~~~~~~~l~v-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~  149 (291)
                      |+|.|+|.+.+..+.......+.. ......|   ........... .+|+.++|.|.+.+.+|.+ .+.|+++|..+.
T Consensus        87 D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P---~v~~~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~  161 (218)
T 2rgs_A           87 SGKEFKCKVNNKDLPSPIERTISKIKGLVRAP---QVYILPPPAEQ-LSRKDVSLTCLVVGFNPGDISVEWTSNGHTEE  161 (218)
T ss_dssp             TTCCEEEEEEETTCSSCEEEEECCCCCCCBCC---EEEEECCCGGG-TTSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCCeEEEEEECCcCCCcceEEEeecCCCCCCC---EEEEECCChHH-hcCCceEEEEEEEeeeCCCcEEEEEECCEecc
Confidence            999999999987654311111111 1111111   11111112122 3599999999995446765 999999998763

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=148.07  Aligned_cols=133  Identities=19%  Similarity=0.251  Sum_probs=83.5

Q ss_pred             eeeeecCCcEEEEEEecCCCCC--eeEEEECCeecCCCeeEeceE-EeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQY-MSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      ...+.+|+.+.|.|.+.+.+.+  .+.|+++|..+.......... ........+.|.|.....+|.|.|+|.+.+..+.
T Consensus       126 ~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~  205 (327)
T 2wng_A          126 AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ  205 (327)
T ss_dssp             SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred             ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence            3568899999999999885544  899999999887433211100 0001112356888877777789999999987665


Q ss_pred             e---eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccC
Q psy14540         88 Q---THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILS  150 (291)
Q Consensus        88 ~---~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~  150 (291)
                      .   .....+.+.. ...|.  ... . +  ..+.+|+.++|.|.+...+|.+ .+.|+++|..+..
T Consensus       206 ~~~~~~~~~~~~~v-~~~P~--i~~-~-~--~~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  265 (327)
T 2wng_A          206 GDPLRGTANLSETI-RVPPT--LEV-T-Q--QPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRT  265 (327)
T ss_dssp             SCCEEEEEEGGGTB-CBCCE--EEE-E-E--ECCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEE
T ss_pred             CCcccceEEecccc-CCCCE--EEE-e-c--CCcCCCCcEEEEEEEccccCCCcEEEEEECCeEccC
Confidence            2   2222221111 11111  111 1 1  1167899999999995324544 8999999988753

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.85  E-value=2.5e-21  Score=152.23  Aligned_cols=130  Identities=26%  Similarity=0.450  Sum_probs=96.3

Q ss_pred             eeeecCCcEEEEEE-----ecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540         12 QTLQPGPPVSLKCI-----ATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus        12 ~~v~~g~~v~l~C~-----~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      ..+.+|+.+.|.|.     +.+.|.+.+.|++++..+...  ++..     ..+.  ..|.|.+++..|+|.|+|.+.+.
T Consensus       130 ~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~-----~~~~--~~L~i~~v~~~d~G~Y~C~a~n~  202 (339)
T 3o4o_C          130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS-----VRGT--THLLVHDVALEDAGYYRCVLTFA  202 (339)
T ss_dssp             EEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEE-----CTTS--SEEEESSCCGGGCEEEEEEEECC
T ss_pred             eEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEE-----cCCc--ceEEEcccCHhhCeEEEEEEEEC
Confidence            46899999999999     677888999999999887632  2221     1111  36999999999999999999987


Q ss_pred             CC----ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee--CCCC-CceeEEeECCEeccC
Q psy14540         85 VG----SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT--KGDP-PLTISWLKNGLPILS  150 (291)
Q Consensus        85 ~~----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p-~~~~~W~~~~~~~~~  150 (291)
                      .+    .....+.|.|...+....  ......+....+.+|+.+.|.|.+.  .+.| .+.+.|++++..+..
T Consensus       203 ~g~~~~~~~~~~~l~V~~~~~~~~--P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~  273 (339)
T 3o4o_C          203 HEGQQYNITRSIELRIKKKKEETI--PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIES  273 (339)
T ss_dssp             BTTBCCEEEEEEEEEEECCCCCCC--CEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSS
T ss_pred             CCCeEEEEEEEEEEEEEcCCCCCC--CEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeeccc
Confidence            66    346677788876542111  1222335556788999999999983  4777 889999999887643

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.85  E-value=1.7e-20  Score=144.34  Aligned_cols=186  Identities=20%  Similarity=0.250  Sum_probs=117.6

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCC--CeeEEEEC-CeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD-GYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~--~~v~W~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +...+....+.+|+.+.|.|.+.+ +.  +.+.|+++ +..+.. ..+...     ..   ..|.|.+++..|+|.|+|.
T Consensus        92 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~-----~~---~~L~i~~~~~~d~G~Y~C~  162 (292)
T 4dkd_C           92 WNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFS-----PW---HGFTIHRAKFIQSQDYQCS  162 (292)
T ss_dssp             EEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECC-----SS---SCCEETTCCGGGCSEEEEE
T ss_pred             ccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCccccc-----CC---ceEEECCCCHHHCeEEEEE
Confidence            345566778999999999999987 43  68999997 444442 222211     11   1288999999999999999


Q ss_pred             EeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540         81 ATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        81 ~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      +.+..+.. +..+.|.|......++   .....+....+.+|+.+.|.|.+....+.+.+.|++++..+...........
T Consensus       163 a~n~~~~~~s~~~~l~V~~~~~~~p---~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  239 (292)
T 4dkd_C          163 ALMGGRKVMSISIRLKVQKVIPGPP---ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN  239 (292)
T ss_dssp             ECSTTSCEECCCEEEEEECCCCSSC---EEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETT
T ss_pred             EEeCCCceeEEEEEEEEeCCCCCCC---eEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccc
Confidence            99776644 4477788876332111   1122233445679999999999964344567888898876644332221111


Q ss_pred             CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540        160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV  239 (291)
Q Consensus       160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~  239 (291)
                      .                  |.                    ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus       240 ~------------------~~--------------------~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  281 (292)
T 4dkd_C          240 R------------------YQ--------------------KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE  281 (292)
T ss_dssp             E------------------EE--------------------EEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred             e------------------ee--------------------eEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence            0                  00                    123566666666666666666766666666666666655


Q ss_pred             C
Q psy14540        240 P  240 (291)
Q Consensus       240 ~  240 (291)
                      .
T Consensus       282 ~  282 (292)
T 4dkd_C          282 S  282 (292)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.84  E-value=1.2e-20  Score=133.11  Aligned_cols=153  Identities=17%  Similarity=0.175  Sum_probs=100.5

Q ss_pred             ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC---CCeeEe----ceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA---GDRFVM----GQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      ..+.+.+|++|+|.|.+. .+.+.|.|++++..+.   ......    ..+... .....+|.|.+++..|+|.|+|.+.
T Consensus         3 ~~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL-DTVSGSLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE-CTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             cEEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEE-eCCCCeEEECCCChhhCceEEEEEe
Confidence            346789999999999985 4788999999886543   111110    000011 0112469999999999999999998


Q ss_pred             CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCc
Q psy14540         83 NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY  162 (291)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~  162 (291)
                      +..+  ...+.|.|..++..|...           .. +....|.|.+ .+.|.+.+.|++++..+......        
T Consensus        81 n~~~--~~~~~L~V~~~~~~p~i~-----------~~-~~~~~L~C~~-~~~p~p~i~W~~~~~~l~~~~~~--------  137 (171)
T 1ccz_A           81 NITD--TMKFFLYVLEMVSKPMIY-----------WE-CSNATLTCEV-LEGTDVELKLYQGKEHLRSLRQK--------  137 (171)
T ss_dssp             TCCS--CEEEEEEEECCCCCCEEE-----------EE-TTTTEEEEEC-SSCSSCEEEEEETTEEEEEESSS--------
T ss_pred             CCCC--cEEEEEEEECcCCCCEEE-----------Ee-cCCcEEEEEe-CCCCCcEEEEEECCEECcCCcce--------
Confidence            7766  677788888765333111           11 1113799999 57788999999999887532211        


Q ss_pred             eEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        163 TSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       163 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                        .+.+.  ...|.|.|+|.|.|..+...
T Consensus       138 --~l~~~--~~~~~g~Y~C~a~N~~~~~~  162 (171)
T 1ccz_A          138 --TMSYQ--WTNLRAPFKCKAVNRVSQES  162 (171)
T ss_dssp             --EEEEE--CSCCSSCEEEEEEETTEEEE
T ss_pred             --EEEEe--ccCCCceEEEEEEcccCccc
Confidence              22222  25677778887777766543

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.84  E-value=1.7e-20  Score=153.35  Aligned_cols=185  Identities=14%  Similarity=0.232  Sum_probs=106.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCC-CC-CeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.+...+....+.+|+.++|.|.+.+. |. +.+.|++++..+......  ......+  ...+.|.|.++..+| |.|
T Consensus       132 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~--~~~~~~~~~~~~s~L~i~~~~~~d-G~Y  208 (457)
T 1hzh_H          132 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP--AVLQSSGLYSLSSVVTVPSSSLGT-QTY  208 (457)
T ss_dssp             CCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEE--EEECTTSCEEEEEEEEECSGGGGT-SCC
T ss_pred             CCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcC--ceECCCCCEEEEEEEEecccccCC-ceE
Confidence            4555544444457899999999999884 64 789999998755411111  0011111  123579999999999 999


Q ss_pred             EEEEeCCCCceeeeeeEEEEcCC---------C--CCcccceeccCCcce-eecCCCceEEEEEeeCCCC-Cc---eeEE
Q psy14540         78 QCTATNRVGSQTHSADMRVYDAP---------G--QPQDVKLVTSNSRSI-KVHSGDRAGVQCLVTKGDP-PL---TISW  141 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~~~---------~--~~~~~~~~~~~~~~~-~~~~g~~~~l~C~~~~~~p-~~---~~~W  141 (291)
                      +|.+.+..+.......+.+...+         .  ...........+... .+.+|+.++|.|.+. +.| .+   .+.|
T Consensus       209 ~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~-g~~p~p~~~~i~W  287 (457)
T 1hzh_H          209 ICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVV-DVSHEDPEVKFNW  287 (457)
T ss_dssp             EEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEE-CCCTTCCCCEEEE
T ss_pred             EEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEE-cccCCCCceEEEE
Confidence            99999866554333333222110         0  000011111122222 256799999999995 654 32   9999


Q ss_pred             eECCEeccCCCceEEeccCCceEE-EEEeeCCCCC---ceeEEEEEEecCCCC
Q psy14540        142 LKNGLPILSDAEITIRSSGEYTSS-LSIATLSTGH---SGNYTCVASNTVASD  190 (291)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~~~~~d---~g~y~C~~~~~~~~~  190 (291)
                      ++++..+.............+... .....+...|   .|.|+|.|.|..+..
T Consensus       288 ~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~  340 (457)
T 1hzh_H          288 YVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA  340 (457)
T ss_dssp             EETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSS
T ss_pred             EeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCC
Confidence            999988754322211111111111 1112234445   999999999865443

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.84  E-value=1.7e-20  Score=141.30  Aligned_cols=195  Identities=15%  Similarity=0.230  Sum_probs=116.8

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----CC--eeEe----c-eEEeeccceEEEEEEeec
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----GD--RFVM----G-QYMSLHGDVISHVNISSV   69 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~~--~~~~----~-~~~~~~~~~~~~l~i~~~   69 (291)
                      .+...|..+.+.+|++++|.|.+.+.+.+.+.|+|.  +....     ..  ....    . +.......... |.|.++
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v   81 (253)
T 3to4_D            3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVA   81 (253)
T ss_dssp             CCEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEE
T ss_pred             EEEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccC
Confidence            345667788999999999999988877889999982  21110     00  0000    0 11111111112 999999


Q ss_pred             CCCCCeEEEEEEeCCCC------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEe
Q psy14540         70 RVEDSGIYQCTATNRVG------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWL  142 (291)
Q Consensus        70 ~~~d~G~y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~  142 (291)
                      +.+|+|.|.|.+.+..+      .......+.|.........+......+....+..|+.++|.|.+...+|.+ .+.|+
T Consensus        82 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~  161 (253)
T 3to4_D           82 NMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (253)
T ss_dssp             SCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             ChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEE
Confidence            99999999999985433      123344677764321111111111222223344578999999996557766 89999


Q ss_pred             ECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-CeeEEEE
Q psy14540        143 KNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SGNYTCV  221 (291)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~  221 (291)
                      ++|..+.......         ...+.....+..|.|..                    .+.|.|.....+| +|.|+|.
T Consensus       162 k~g~~l~~~~~~~---------~~~~~~~~~~~~g~~~~--------------------~s~l~i~~~~~~d~~~~ytC~  212 (253)
T 3to4_D          162 VNGKEVHSGVSTD---------PQPLKEQPALNDSRYAL--------------------SSRLRVSATFWQNPRNHFRCQ  212 (253)
T ss_dssp             ETTEEECTTEEEC---------SSCEESSTTCTTCCEEE--------------------EEEEEEEHHHHTCTTCEEEEE
T ss_pred             ECCEECCCceecc---------cccccccccCCCCCEEE--------------------EEEEEECHHHhccCCCEEEEE
Confidence            9998875432110         00111122224456654                    2457777777777 7899999


Q ss_pred             eeeCCcc
Q psy14540        222 ASNTVAS  228 (291)
Q Consensus       222 ~~~~~~~  228 (291)
                      |.|....
T Consensus       213 v~h~~l~  219 (253)
T 3to4_D          213 VQFYGLS  219 (253)
T ss_dssp             EEECCBC
T ss_pred             EEeCCCC
Confidence            9987643

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.84  E-value=2.8e-20  Score=156.63  Aligned_cols=180  Identities=23%  Similarity=0.416  Sum_probs=123.2

Q ss_pred             ceeeeecCCcEEEEEEe-cCCCCCeeEEEECCeecCCCee-------EeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540         10 IQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRF-------VMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ....+.+|++++|.|.+ .+.+.+.+.|++++..+.....       ....+.....+  .+|.|.+++.+|+|.|+|.+
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~L~i~~v~~~D~G~Y~C~~  451 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPN--GSLFLPAVGIQDEGIFRCQA  451 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTT--SCEEESSCCGGGCEEEEEEE
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCC--ceEEEeccccccCeEEEEEE
Confidence            34678999999999998 6678889999998763321100       00000011111  25999999999999999999


Q ss_pred             eCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCc-eEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540         82 TNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR-AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS  159 (291)
Q Consensus        82 ~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~  159 (291)
                      .+..+.. ...+.|.|...+..|.    ... .... +.+|+. +.|.|.+..++|.+.+.|+++|..+......     
T Consensus       452 ~n~~~~~~~~~~~l~V~~~~~~p~----i~~-~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~-----  520 (581)
T 3o3u_N          452 MNRNGKETKSNYRVRVYQIPGKPE----IVD-SASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKG-----  520 (581)
T ss_dssp             ECTTSCEEEEEEEEEEEBCCCCCE----EES-CCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTT-----
T ss_pred             EcCCCceeEEEEEEEEEcCCCCCE----EEc-CCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCe-----
Confidence            9888776 7788899988665431    111 1112 444544 4679999555799999999999988653221     


Q ss_pred             CCceEEEEEeeCC-CCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeee-cCCCeeEEEEeeeCCc
Q psy14540        160 GEYTSSLSIATLS-TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLS-TGHSGNYTCVASNTVA  227 (291)
Q Consensus       160 ~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~~  227 (291)
                           .+...... ..+.|.|+|.                    ++|.|..+. .++.|.|+|.|+|...
T Consensus       521 -----~~~~~~~~~~~~~g~y~~~--------------------s~L~i~~~~~~d~~~~y~C~~~n~~~  565 (581)
T 3o3u_N          521 -----VSVKEQTRRHPETGLFTLQ--------------------SELMVTPARGGDPRPTFSCSFSPGLP  565 (581)
T ss_dssp             -----EEEEEEEEECTTTCCEEEE--------------------EEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred             -----EEEEeeeEEcCCCceEEEE--------------------EEEEEEeccccCCCceEEEEEeccCC
Confidence                 11112222 3388999994                    578999988 5668999999999863

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.84  E-value=1.8e-20  Score=136.30  Aligned_cols=160  Identities=23%  Similarity=0.326  Sum_probs=98.2

Q ss_pred             eecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeee
Q psy14540         14 LQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD   93 (291)
Q Consensus        14 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   93 (291)
                      +.+|++++|.|.+   +.+.+.|+|+|..+....           ....+|.|.+++.+|+|.|+|.+.+..   +..+.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~-----------~~~~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~   77 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLT-----------EDKKKWNLGSNAKDPRGMYQCKGSQNK---SKPLQ   77 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEEE-----------SSCCCEEEEEGGGCCEEEEEEESSSSC---CCCEE
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCCC-----------CCCCeEEeCCCCcCCCEEEEEEecCCC---CeeEE
Confidence            4689999999998   678999999998765210           012358899999999999999965422   22234


Q ss_pred             EEEEcCC------C-----------------C-CcccceeccCCcceeec-CCCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540         94 MRVYDAP------G-----------------Q-PQDVKLVTSNSRSIKVH-SGDRAGVQCLVTKGDPPLTISWLKNGLPI  148 (291)
Q Consensus        94 l~v~~~~------~-----------------~-~~~~~~~~~~~~~~~~~-~g~~~~l~C~~~~~~p~~~~~W~~~~~~~  148 (291)
                      +.+....      .                 . ..........+  ..+. +|+.++|.|.   +.|.+.+.|++++..+
T Consensus        78 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~v~~~G~~v~L~C~---g~p~p~i~W~k~~~~l  152 (204)
T 1sy6_A           78 VYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP--YKVSISGTTVILTCP---QYPGSEILWQHNDKNI  152 (204)
T ss_dssp             EEEEC------------------------------------CCC--CEEEEETTEEEEECS---CCCSSCEEEEETTEEE
T ss_pred             EEEEEeccccccccccccccccccccccccccccccccceecCC--ceeeecCCcEEEEcC---CCCCCceEEEECCEEC
Confidence            4443000      0                 0 00000011111  2233 8999999998   5788899999999877


Q ss_pred             cCCCce-EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeee-ecCCCeeEEEEeeeCC
Q psy14540        149 LSDAEI-TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATL-STGHSGNYTCVASNTV  226 (291)
Q Consensus       149 ~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~~~~~~  226 (291)
                      ...... .+.                                          .....|.|.++ ..+|+|.|+|.|.|..
T Consensus       153 ~~~~~~~~~~------------------------------------------~~~~~L~I~~v~~~~D~G~Y~C~A~N~~  190 (204)
T 1sy6_A          153 GGDEDDKNIG------------------------------------------SDEDHLSLKEFSELEQSGYYVCYPRGSK  190 (204)
T ss_dssp             SCCTTCTTEE------------------------------------------EETTEEEETTCCHHHHCEEEEEEETTSC
T ss_pred             CCccCCceEe------------------------------------------cCCCEEEEeeCCccccCEEEEEEeccCC
Confidence            532110 000                                          01345777777 7777777777777777


Q ss_pred             cc-CCceeEEEE
Q psy14540        227 AS-DNHSSNLRV  237 (291)
Q Consensus       227 ~~-~~~~~~l~v  237 (291)
                      +. .+..+.|.+
T Consensus       191 g~~~s~~l~l~~  202 (204)
T 1sy6_A          191 PEDANFYLYLRA  202 (204)
T ss_dssp             GGGSSCEEEEEE
T ss_pred             CCceeEEEEEEE
Confidence            64 344444444

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.84  E-value=1.1e-19  Score=137.98  Aligned_cols=142  Identities=13%  Similarity=0.256  Sum_probs=87.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCC-----CCeeEEEECC--eecC-----CCeeE---eceEEeeccceEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDG--YPLA-----GDRFV---MGQYMSLHGDVISHVNI   66 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~~-----~~~~~---~~~~~~~~~~~~~~l~i   66 (291)
                      .+.+...|..+.+.+|++++|.|.+.+.+     .+.+.|+++.  ..+.     .....   ..+.........++|+|
T Consensus        15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I   94 (268)
T 1x9q_A           15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI   94 (268)
T ss_dssp             CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred             cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence            45677788888999999999999998765     4789999853  2110     00000   01111111234568999


Q ss_pred             eecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCC-----Ccc-c----------ceeccCCcceeecCCCceEEEEE
Q psy14540         67 SSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQ-----PQD-V----------KLVTSNSRSIKVHSGDRAGVQCL  129 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~-----~~~-~----------~~~~~~~~~~~~~~g~~~~l~C~  129 (291)
                      .+++.+|+|.|.|.+.+..+. ......|.|...+..     |+. .          ......+....+.+|+.++|.|.
T Consensus        95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~  174 (268)
T 1x9q_A           95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCV  174 (268)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEE
T ss_pred             CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEE
Confidence            999999999999999876432 233456666554320     000 0          00112233467889999999999


Q ss_pred             eeCCCC--CceeEEeEC
Q psy14540        130 VTKGDP--PLTISWLKN  144 (291)
Q Consensus       130 ~~~~~p--~~~~~W~~~  144 (291)
                      +. +.+  .+.+.|+++
T Consensus       175 ~~-~~~~~~~~v~W~k~  190 (268)
T 1x9q_A          175 TS-GFTFGHYWMNWVRQ  190 (268)
T ss_dssp             EE-SSCGGGCEEEEEEE
T ss_pred             ec-CccccccEEEEEEe
Confidence            94 544  378999985

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.84  E-value=8.5e-20  Score=131.13  Aligned_cols=128  Identities=20%  Similarity=0.291  Sum_probs=94.1

Q ss_pred             ceeecce--eeeecCCcEEEEEEecCCCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          5 LIYKFIQ--QTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         5 ~~~~~~~--~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      |.+.|..  +.|..|++++|.|.+ +.|.+  .|+|++.+..+.  +..       .......|.|.+++.+|+|.|.|.
T Consensus         8 ~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~--~~~-------~~~~~~~L~I~~v~~~d~G~Y~C~   77 (210)
T 1gsm_A            8 LQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLG--AVQ-------SDTGRSVLTVRNASLSAAGTRVCV   77 (210)
T ss_dssp             EEEESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC--CEE-------EESSEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEeCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeecccccC--cEE-------ecCCccEEEECccCcccCceEEEE
Confidence            3344443  489999999999999 77666  999998554431  111       012336699999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC----ceeEEeECCEeccCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP----LTISWLKNGLPILSD  151 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~----~~~~W~~~~~~~~~~  151 (291)
                      +.+..+.....+.|.|..+|..+   . . . +  ..+.+|+.+ |.|.+.+.+|.    +++.|++++.++...
T Consensus        78 a~n~~~~~~~~~~ltV~~~P~~~---~-i-~-~--~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~  143 (210)
T 1gsm_A           78 GSCGGRTFQHTVQLLVYAFPNQL---T-V-S-P--AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGA  143 (210)
T ss_dssp             EEETTEEEEEEEEEEEEBCCSEE---E-E-E-S--SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTC
T ss_pred             EEeCCCceEEEEEEEEEecCCCc---E-E-c-c--ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccc
Confidence            99887777888999999876322   1 1 1 1  155678888 99999655674    589999999998543

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.84  E-value=9.2e-21  Score=143.84  Aligned_cols=116  Identities=19%  Similarity=0.353  Sum_probs=87.8

Q ss_pred             cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC-Cc
Q psy14540          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV-GS   87 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-~~   87 (291)
                      +....+.+|+.++|.|.+.  |.+.+.|  +|..+....            ....|.|..+..+|.|.|+|.+.+.. |.
T Consensus       105 ~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~------------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~  168 (265)
T 2oz4_A          105 LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG------------PRAQLLLKATPEDNGRSFSCSATLEVAGQ  168 (265)
T ss_dssp             ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS------------SEECCEEECCGGGTTEEEEEEEEEECSSS
T ss_pred             cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC------------CcEEEEEccccccCCceEEEEEEcCCCCC
Confidence            4556788999999999997  8889999  777664211            12457888999999999999997543 55


Q ss_pred             ee---eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCE
Q psy14540         88 QT---HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL  146 (291)
Q Consensus        88 ~~---~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~  146 (291)
                      ..   ..+.|.|...|...     ....+....+.+|+.++|.|.+ .|.|.+.+.|++++.
T Consensus       169 ~~~~s~~~~l~V~~~p~~~-----~~~~p~~~~v~~g~~~~l~C~~-~g~P~p~i~W~~~~~  224 (265)
T 2oz4_A          169 LIHKNQTRELRVLYGPRLD-----ERDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGT  224 (265)
T ss_dssp             EEEEEEEEEEEEEEEEECC-----GGGSCSEEEEETTCEECCCCCC-EEESCCEEEEEETTT
T ss_pred             cccccccEEEEEEeCCccc-----cccCCCccEEcCCCeEEEEeEC-ccCCCCeEEEEECCc
Confidence            44   66778887655321     1122345678899999999998 799999999999986

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.84  E-value=1.9e-19  Score=132.88  Aligned_cols=140  Identities=21%  Similarity=0.301  Sum_probs=88.8

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------CC---eeE----eceEEe--eccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------GD---RFV----MGQYMS--LHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------~~---~~~----~~~~~~--~~~~~~~~l~i~   67 (291)
                      ..|..+.+.+|++++|.|.+.+.+  .+.+.|+|..  ....      ..   ...    ..+...  ......++|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (223)
T 1dee_B            5 VESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMN   84 (223)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             EcCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEEC
Confidence            345678899999999999998754  4789999843  1110      00   000    011111  112345789999


Q ss_pred             ecCCCCCeEEEEEEeCCCC------ceeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-ee
Q psy14540         68 SVRVEDSGIYQCTATNRVG------SQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TI  139 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~------~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~  139 (291)
                      +++.+|+|.|.|.+.+..+      .....+.|.|...+ ..|  .+.. ..+. ..+.+|+.++|.|.+...+|.+ .+
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P--~i~~-~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v  160 (223)
T 1dee_B           85 SLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAP--TLFP-LVSC-ENSNPSSTVAVGCLAQDFLPDSITF  160 (223)
T ss_dssp             SCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCC--EEEE-EECT-TCCCSSSEEEEEEEEEEEBSSCCEE
T ss_pred             CCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCC--EEEE-ecCC-cccCCCCcEEEEEEEEEEeCCCeEE
Confidence            9999999999999987542      12234577776422 122  1111 1111 2346899999999996555776 99


Q ss_pred             EEeE-CCEeccC
Q psy14540        140 SWLK-NGLPILS  150 (291)
Q Consensus       140 ~W~~-~~~~~~~  150 (291)
                      .|++ +|..+..
T Consensus       161 ~W~~~~g~~l~~  172 (223)
T 1dee_B          161 SWKYKNNSDISS  172 (223)
T ss_dssp             EEEETTSCBCSC
T ss_pred             EeEccCCCccce
Confidence            9999 8887743

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.84  E-value=1.7e-19  Score=132.95  Aligned_cols=135  Identities=21%  Similarity=0.340  Sum_probs=88.6

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--ee---cC---------------CCeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YP---LA---------------GDRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~---------------~~~~~~~~~~~~~~~~~~~l   64 (291)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+|..  ..   +.               ..++...   .......++|
T Consensus         5 ~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~L   81 (220)
T 2fbj_H            5 LESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIIS---RDNAKNSLYL   81 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEE---ECSSSCEEEE
T ss_pred             ecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEE---eeCCCCEEEE
Confidence            345668899999999999998754  5789999843  21   10               0111110   0112345789


Q ss_pred             EEeecCCCCCeEEEEEEeCCCCc---eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--cee
Q psy14540         65 NISSVRVEDSGIYQCTATNRVGS---QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LTI  139 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~  139 (291)
                      +|.+++.+|+|.|.|.+.+..+.   ....+.|.|...+..++ .... ..  ...+.+|+.++|.|.+...+|.  +.+
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P-~v~~-~~--~~~~~~g~~v~L~C~~~g~~P~~~~~v  157 (220)
T 2fbj_H           82 QMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNP-TIYP-LT--LPPALSSDPVIIGCLIHDYFPSGTMNV  157 (220)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCC-EEEE-EC--CCSSSCCSSEEEEEEEEEEBSCCCEEE
T ss_pred             EECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCC-EEEE-ee--cccccCCCcEEEEEEEEeEECCCcEEE
Confidence            99999999999999999875442   23345777765332111 1111 11  2245689999999999655576  799


Q ss_pred             EEeECCEec
Q psy14540        140 SWLKNGLPI  148 (291)
Q Consensus       140 ~W~~~~~~~  148 (291)
                      .|++++..+
T Consensus       158 ~W~~~~~~~  166 (220)
T 2fbj_H          158 TWGKSGKDI  166 (220)
T ss_dssp             EESCCCSSC
T ss_pred             EEecCCEec
Confidence            999998765

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.84  E-value=2.9e-20  Score=132.29  Aligned_cols=154  Identities=18%  Similarity=0.272  Sum_probs=99.0

Q ss_pred             ceeeeecCCcEEEEEEecC-CCCCeeEEEEC-CeecC---CC-ee-Ee-c---eEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540         10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLD-GYPLA---GD-RF-VM-G---QYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~-~~~~~---~~-~~-~~-~---~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      ....+.+|++++|.|.+.. .+.+.|.|+++ +..+.   .. .. .. .   .+... .....+|.|.+++.+|+|.|+
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l-~~~~~sL~I~~v~~~D~G~Y~   85 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL-DKTNGALRIYNVSKEDRGDYY   85 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE-CTTTCCEEECSCCGGGCEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE-eCCCccEEEcCCCHHHCeEEE
Confidence            4567999999999999854 34678999994 33221   10 00 00 0   00111 112246999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS  158 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  158 (291)
                      |.+.+.. .....+.|.|..++..|.           +. ..+..++|.|.+..+ |.+.+.|++++..+...       
T Consensus        86 C~v~~~~-~~~~~~~L~V~~~~~~P~-----------i~-~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~-------  144 (180)
T 2dru_A           86 MRMLHET-EDQWKITMEVYEMVSKPM-----------IY-WECSNATLTCEVLEG-TDVELKLYQGKEHLRSL-------  144 (180)
T ss_dssp             EEEESSS-EEEEEEEEEEECCCCCCE-----------EE-EEGGGTEEEEECSSC-TTCEEEEEETTEEEEEE-------
T ss_pred             EEEEcCC-eEEEEEEEEEECCCCCCE-----------EE-ecCCCEEEEEEeCCC-CCCEEEEEECCeECcCC-------
Confidence            9998655 566677888876543321           11 134569999998556 89999999999877410       


Q ss_pred             cCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                         ....+.+..  .+|.|.|+|.|.|..+..
T Consensus       145 ---~~~~l~~~~--~~d~g~Y~C~a~N~~~~~  171 (180)
T 2dru_A          145 ---RQKTMSYQW--TNLRAPFKCKAVNRVSQE  171 (180)
T ss_dssp             ---SSSEEEEEC--SCCSSCEEEEEEETTEEE
T ss_pred             ---CCCEEEEEE--hhcCccEEEEEecCcCcc
Confidence               012333322  567777777777766543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.84  E-value=2.6e-20  Score=137.91  Aligned_cols=193  Identities=19%  Similarity=0.240  Sum_probs=110.5

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC--------CCeeE-----eceEEee--ccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA--------GDRFV-----MGQYMSL--HGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~--------~~~~~-----~~~~~~~--~~~~~~~l~i~   67 (291)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+|++  ..+.        .....     ..+....  .....++|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (227)
T 1mju_H            5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (227)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence            456678899999999999998765  6789999853  2110        00000     0111111  12345789999


Q ss_pred             ecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeEC
Q psy14540         68 SVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKN  144 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~  144 (291)
                      +++.+|+|.|.|.+.+.... ....+.|.|...+ ..|   ......+. ..+.+|+.++|.|.+.+.+|.+ .+.|+++
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P---~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  160 (227)
T 1mju_H           85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAP---SVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSG  160 (227)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCC---EEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCC---EEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEEecC
Confidence            99999999999999864321 2234567776522 111   11111111 2356799999999995445766 9999998


Q ss_pred             CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      +..+......         . . +     .. |.|.-                    .+.|.|..+..+| |.|+|.|.|
T Consensus       161 g~~~~~~~~~---------~-~-~-----~~-g~~~~--------------------~s~L~i~~~~~~~-g~Y~C~a~n  202 (227)
T 1mju_H          161 SLSSGVHTFP---------A-V-L-----QS-DLYTL--------------------SSSVTVTSSTWPS-QSITCNVAH  202 (227)
T ss_dssp             TBCTTEEECC---------C-E-E-----ET-TEEEE--------------------EEEEEECTTTTTT-SCCEEEEEE
T ss_pred             CCcCCcEECC---------c-e-e-----cC-CeEEE--------------------EEEEEEchhhcCC-CeEEEEEEE
Confidence            8764211000         0 0 0     01 33321                    3457777777767 888998888


Q ss_pred             CCccCCceeEEEEecCC
Q psy14540        225 TVASDNHSSNLRVNVPP  241 (291)
Q Consensus       225 ~~~~~~~~~~l~v~~~p  241 (291)
                      ..........+.+..+|
T Consensus       203 ~~~~~~~~~~~~~~~~p  219 (227)
T 1mju_H          203 PASSTKVDKKIEPRGPT  219 (227)
T ss_dssp             GGGTEEEEEECCCCCC-
T ss_pred             CCCCcceEEEeCCCCCC
Confidence            76554444444444443

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.84  E-value=2.5e-20  Score=137.42  Aligned_cols=134  Identities=25%  Similarity=0.388  Sum_probs=88.0

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--ee---cC---C--------------CeeEeceEEeeccceEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YP---LA---G--------------DRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~---~--------------~~~~~~~~~~~~~~~~~   62 (291)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+|++  ..   +.   .              .++...   .......+
T Consensus         5 ~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~   81 (220)
T 1pz5_B            5 EESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTIS---RDDSKSSV   81 (220)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEE---EEGGGTEE
T ss_pred             eccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEE---EeCCCCeE
Confidence            456778899999999999998755  6789999853  21   10   0              111110   01123456


Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCCc---eeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVGS---QTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-  137 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~~---~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-  137 (291)
                      +|.|.+++.+|+|.|.|.+.+..+.   ....+.|.|...+ ..|   ...... ....+.+|+.++|.|.+.+.+|.+ 
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P---~i~~~~-~~~~~~~g~~v~L~C~~~g~~P~p~  157 (220)
T 1pz5_B           82 YLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAP---SVYPLV-PGCSDTSGSSVTLGCLVKGYFPEPV  157 (220)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCC---EEEEEC-CCSCCSCSSSEEEEEEEEEEBSSCC
T ss_pred             EEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCC---eEEEcc-cccccCCCCcEEEEEEEEEEeCCCe
Confidence            8999999999999999999876432   1234567776432 111   111111 122356899999999995445888 


Q ss_pred             eeEEeECCEe
Q psy14540        138 TISWLKNGLP  147 (291)
Q Consensus       138 ~~~W~~~~~~  147 (291)
                      .+.|++++..
T Consensus       158 ~v~W~~~~~~  167 (220)
T 1pz5_B          158 TVKWNYGALS  167 (220)
T ss_dssp             EEEEGGGTCC
T ss_pred             EEEEecCCcc
Confidence            9999998764

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.83  E-value=2.1e-19  Score=134.41  Aligned_cols=144  Identities=16%  Similarity=0.227  Sum_probs=93.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC-----C--Cee------EeceEEe--eccceEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA-----G--DRF------VMGQYMS--LHGDVIS   62 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~-----~--~~~------~~~~~~~--~~~~~~~   62 (291)
                      ++.+...|..+.+.+|++++|.|.+.+.  +...+.|+|..  ..+.     .  ...      ...+...  ..+...+
T Consensus         1 ~~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   80 (242)
T 1hxm_B            1 AGHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTS   80 (242)
T ss_dssp             CCEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEE
T ss_pred             CCccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEE
Confidence            3566777888999999999999999874  56789999843  2110     0  000      0011111  1122457


Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCC-------ceeeeeeEEEEcCCC----CCcccceeccCCcceeecCCCceEEEEEee
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVG-------SQTHSADMRVYDAPG----QPQDVKLVTSNSRSIKVHSGDRAGVQCLVT  131 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~-------~~~~~~~l~v~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  131 (291)
                      +|.|.+++.+|+|.|.|.+.+...       .....+.|.|...+.    .|....   ..+....+.+|+.++|.|.+.
T Consensus        81 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v---~~p~~~~~~~g~~v~L~C~~~  157 (242)
T 1hxm_B           81 TLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTI---FLPSIAETKLQKAGTYLCLLE  157 (242)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCC---CCCCGGGGGSSSCEEEEEEEE
T ss_pred             EEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceE---ECCChhhcccCCCceEEEEEe
Confidence            899999999999999999986421       122346788876432    111111   112334466799999999996


Q ss_pred             CCCCC-ceeEEeECCE-ec
Q psy14540        132 KGDPP-LTISWLKNGL-PI  148 (291)
Q Consensus       132 ~~~p~-~~~~W~~~~~-~~  148 (291)
                      +.+|. +.+.|++++. .+
T Consensus       158 g~~P~~~~v~W~~~~~~~l  176 (242)
T 1hxm_B          158 KFFPDVIKIHWEEKKSNTI  176 (242)
T ss_dssp             EESSCCEEEEEEESSSCCC
T ss_pred             eEECCCeEEEEEcCCCEee
Confidence            44575 7999999986 45

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.83  E-value=8.8e-22  Score=159.99  Aligned_cols=185  Identities=14%  Similarity=0.209  Sum_probs=112.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCC-CCC-eeEEEECCeecCCCeeEeceEEe-eccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRFVMGQYMS-LHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..+...  ....... ......+.|.|.+++.+| |.|+
T Consensus       119 ~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~  195 (434)
T 1igy_B          119 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH--TFPAVLQSDLYTLSSSVTVPSSPRPS-ETVT  195 (434)
T ss_dssp             CCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEE--ECCCEECSSCEEEEEEEEEETTTTTS-SCCE
T ss_pred             CCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeE--ecCceecCCcEEEEEEEEEcchhcCC-CcEE
Confidence            3555443333456799999999999874 665 89999998753210  0000000 011123568999999989 9999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCC------CCCcccceeccCCccee-ecCCCceEEEEEeeCCCC----CceeEEeECCEe
Q psy14540         79 CTATNRVGSQTHSADMRVYDAP------GQPQDVKLVTSNSRSIK-VHSGDRAGVQCLVTKGDP----PLTISWLKNGLP  147 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~------~~~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~p----~~~~~W~~~~~~  147 (291)
                      |.+.+..+.......+.+....      ..+.........+.... +.+|+.++|.|.+. +.+    .+.+.|++++..
T Consensus       196 C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~-g~~p~P~~~~i~W~k~~~~  274 (434)
T 1igy_B          196 CNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVV-DISKDDPEVQFSWFVDNVE  274 (434)
T ss_dssp             EEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEEC-CCCSSCCCCCBCBBSSSCC
T ss_pred             EEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEe-ccccCCCCeEEEEEeCCcc
Confidence            9999888764433333221100      00000111112222122 77899999999995 653    458999999977


Q ss_pred             ccCCCceEEe--ccC--CceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        148 ILSDAEITIR--SSG--EYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       148 ~~~~~~~~~~--~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      +.........  ..+  .....|.|..+..+|.|.|+|.|.|..+..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  321 (434)
T 1igy_B          275 VHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA  321 (434)
T ss_dssp             BCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred             cCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence            6533211111  111  123468888999999999999999987753

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.83  E-value=8.2e-20  Score=135.08  Aligned_cols=135  Identities=21%  Similarity=0.285  Sum_probs=88.5

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~l   64 (291)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|++..  ..+.                  ..++...   .......++|
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~sL   81 (225)
T 1op3_H            5 VESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVS---RDDLEDFVYL   81 (225)
T ss_dssp             EEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEE---EETTTTEEEE
T ss_pred             EcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEE---ecCCCCEEEE
Confidence            346677899999999999998755  6789999853  2110                  0111110   0112345789


Q ss_pred             EEeecCCCCCeEEEEEEeCCCC-----c---eeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCC
Q psy14540         65 NISSVRVEDSGIYQCTATNRVG-----S---QTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP  135 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~~~~~-----~---~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p  135 (291)
                      .|.+++.+|+|.|.|.+.+..+     .   ....+.|.|...+ ..|   ......+. ..+.+|+.++|.|.+...+|
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P---~v~~~~~~-~~~~~g~~v~L~C~~~g~~P  157 (225)
T 1op3_H           82 QMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGP---SVFPLAPS-SKSTSGGTAALGCLVKDYFP  157 (225)
T ss_dssp             EECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCC---EEEEECCC-TTCCCCCEEEEEEEEEEEBS
T ss_pred             EECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCC---eEEEeccc-ccccCCCcEEEEEEEEeEEC
Confidence            9999999999999999987653     1   2234677887632 112   11111111 12467999999999964457


Q ss_pred             Cc-eeEEeECCEec
Q psy14540        136 PL-TISWLKNGLPI  148 (291)
Q Consensus       136 ~~-~~~W~~~~~~~  148 (291)
                      .+ .+.|++++..+
T Consensus       158 ~p~~v~W~~~~~~~  171 (225)
T 1op3_H          158 EPVTVSWNSGALTS  171 (225)
T ss_dssp             SCCEEECCTTSCCT
T ss_pred             CCeEEEEecCCCcC
Confidence            66 99999988653

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.83  E-value=5.3e-19  Score=130.41  Aligned_cols=136  Identities=19%  Similarity=0.341  Sum_probs=87.4

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC--------------------CCeeEeceEEeeccceE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA--------------------GDRFVMGQYMSLHGDVI   61 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~   61 (291)
                      +..|....+.+|++++|.|.+.+.+  ...+.|++..  ....                    .+++...   .......
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~   80 (221)
T 3m8o_H            4 LVESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTIS---RDDSKNT   80 (221)
T ss_dssp             EEEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEE---EEGGGTE
T ss_pred             EEccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEE---ecCCCCE
Confidence            3456678899999999999998633  5789999832  1110                    0111110   1112345


Q ss_pred             EEEEEeecCCCCCeEEEEEEeCCC--CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--c
Q psy14540         62 SHVNISSVRVEDSGIYQCTATNRV--GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--L  137 (291)
Q Consensus        62 ~~l~i~~~~~~d~G~y~C~~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~  137 (291)
                      ++|.|.+++.+|+|.|.|.+.+..  ......+.+.|...+..++ ...... +...  .+|+.++|.|.+..+.|.  +
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p-~v~~~~-~~~~--~~g~~v~L~C~~~~~~P~~~~  156 (221)
T 3m8o_H           81 AFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSP-KVFPLS-LCST--QPDGNVVIACLVQGFFPQEPL  156 (221)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCC-EEEEEE-CCSC--CCTTEEEEEEEEEEEBSSCSE
T ss_pred             EEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCC-eEEEec-Cccc--ccCCCEEEEEEEEeeECCCCE
Confidence            789999999999999999998753  2334455677763321111 111111 1111  689999999999654776  5


Q ss_pred             eeEEeECCEec
Q psy14540        138 TISWLKNGLPI  148 (291)
Q Consensus       138 ~~~W~~~~~~~  148 (291)
                      .+.|+++|..+
T Consensus       157 ~v~W~~~g~~~  167 (221)
T 3m8o_H          157 SVTWSESGQGV  167 (221)
T ss_dssp             EEEESCCSTTC
T ss_pred             EEEEEECCEEC
Confidence            99999988766

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.83  E-value=4.7e-20  Score=131.04  Aligned_cols=159  Identities=16%  Similarity=0.297  Sum_probs=102.1

Q ss_pred             cceeeeecCCcEEEEEEecC--CCCCeeEEEE--CCeecCC--C---eeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          9 FIQQTLQPGPPVSLKCIATG--NPTPHISWKL--DGYPLAG--D---RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~--~~~~~~~--~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +..+...+|++++|.|....  .+.+.|.|++  ++..+..  .   .+....+.....+  .+|.|.+++..|+|.|+|
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~n--gsL~I~~v~~~DsG~Y~c   83 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN--GTLKIKHLKTDDQDIYKV   83 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTT--SCEEECSCCGGGCEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCC--CCEEECCCChhhCEEEEE
Confidence            45567889999999995432  4567899999  8876520  0   0000111111122  269999999999999999


Q ss_pred             EEeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe
Q psy14540         80 TATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR  157 (291)
Q Consensus        80 ~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~  157 (291)
                      .+.+..+..  ...+.|.|......|.           +.. .+..++|.|.+ .+.|.+.+.|+++|..+ ...     
T Consensus        84 ~~~n~~g~~~~~~~~~L~V~~~~~~P~-----------i~~-~~~~v~L~C~~-~~~p~~~~~W~~~g~~l-~~~-----  144 (182)
T 1hnf_A           84 SIYDTKGKNVLEKIFDLKIQERVSKPK-----------ISW-TCINTTLTCEV-MNGTDPELNLYQDGKHL-KLS-----  144 (182)
T ss_dssp             EEEETTSCEEEEEEEEEEEECCCCCCE-----------EEE-ETTTTEEEEEC-SSCSSCEEEEEESSCEE-EEE-----
T ss_pred             EEEeCCCceeEEEEEEEEEcCcCCCCE-----------EEE-ccCcEEEEeEc-cCCCCCEEEEEECCEEC-CCC-----
Confidence            999877764  3456778876432221           111 23479999999 57778999999999877 110     


Q ss_pred             ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                           ...+.+. ...+|.|.|+|.|.|..+......
T Consensus       145 -----~~~i~~~-~~~~d~G~Y~C~a~N~~~~~~s~~  175 (182)
T 1hnf_A          145 -----QRVITHK-WTTSLSAKFKCTAGNKVSKESSVE  175 (182)
T ss_dssp             -----SSCEEEE-CCSCEEEEEEEEEECSSCEEEEEE
T ss_pred             -----CcEEEEe-cccCCCcEEEEEEEeCCCCcEEcc
Confidence                 1112222 245677788888877776554443

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.83  E-value=3.4e-19  Score=130.87  Aligned_cols=133  Identities=25%  Similarity=0.332  Sum_probs=95.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ||.| ..|....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......  ...........|.|.+++..|+|.|+|.+
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN--IKIYNTPSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCS--EEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCcc--EEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence            5666 56777889999999999999998889999999999887332110  01111223477999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee---CCCCCc--eeEEeECCE
Q psy14540         82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT---KGDPPL--TISWLKNGL  146 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~---~~~p~~--~~~W~~~~~  146 (291)
                      .|..|.....+.+.|...|..|....         ....+..+.|.|...   .+.|..  .+.|.+++.
T Consensus        96 ~n~~g~~~~~~~l~v~~~P~~p~~~~---------~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~  156 (215)
T 3mtr_A           96 VNRIGQESLEFILVQADTPSSPSIDQ---------VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE  156 (215)
T ss_dssp             ECSSCEEEEEEEEEECCCCCCCEEEE---------EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTC
T ss_pred             EECCCceEEEEEEEECCCCCCCcceE---------EEEecceEEEEEecCCccCCCceEEEEEEEEECCC
Confidence            99999988888888887775542111         123456788888732   233333  477777664

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.83  E-value=2.9e-19  Score=127.73  Aligned_cols=134  Identities=19%  Similarity=0.337  Sum_probs=103.1

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.......              +               
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~--------------~---------------   56 (182)
T 1rhf_A            7 GAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSE--------------Q---------------   56 (182)
T ss_dssp             CCCEEEEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEET--------------T---------------
T ss_pred             eCCcceEEeCCCcEEEEEEE-eCCCCCeEEEEECCeecCCCCceEEEecC--------------C---------------
Confidence            34455788999999999999 57888999999999887654322211110              0               


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL  268 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p  268 (291)
                               .....|.|.++..+|+|.|+|.+.+..+. .+..+.|.|..+|.+...+... +.+|+.+.|.|.+ .+.|
T Consensus        57 ---------~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p  126 (182)
T 1rhf_A           57 ---------HWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA-VGPP  126 (182)
T ss_dssp             ---------EEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEE-ECSS
T ss_pred             ---------CceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEe-cCCC
Confidence                     01356888888888999999999887643 5677888998888877665555 8999999999999 8889


Q ss_pred             Cc-eEEEEECCEEccCC
Q psy14540        269 PL-SLQWYKNGLAISQP  284 (291)
Q Consensus       269 ~~-~v~W~~~~~~l~~~  284 (291)
                      .| .+.|+++|..+...
T Consensus       127 ~p~~v~W~~~~~~~~~~  143 (182)
T 1rhf_A          127 EPVTIVWWRGTTKIGGP  143 (182)
T ss_dssp             SCCEEEEEETTEECSCS
T ss_pred             CCCEEEEEcCCeECCCC
Confidence            88 99999999998653

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.83  E-value=9.9e-20  Score=134.91  Aligned_cols=138  Identities=21%  Similarity=0.287  Sum_probs=85.9

Q ss_pred             eecceeeeecCCcEEEEEEecCCCC----CeeEEEEC--CeecC------C-CeeE-----eceEEee--ccceEEEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNPT----PHISWKLD--GYPLA------G-DRFV-----MGQYMSL--HGDVISHVNI   66 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~--~~~~~------~-~~~~-----~~~~~~~--~~~~~~~l~i   66 (291)
                      ..|....+.+|++++|.|.+.+.+.    +.+.|+|.  +..+.      . ....     ..+....  .....++|.|
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (228)
T 3bae_H            5 KESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI   84 (228)
T ss_dssp             EEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred             eCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence            3467788999999999999987653    78999984  22210      0 0000     0111111  1223478999


Q ss_pred             eecCCCCCeEEEEEEeCCCC------c---eeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCC
Q psy14540         67 SSVRVEDSGIYQCTATNRVG------S---QTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP  136 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~~~------~---~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~  136 (291)
                      .+++.+|+|.|.|.+.+..+      .   ....+.|.|...+ ..|   ......+ ...+.+|+.++|.|.+...+|.
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P---~i~~~~~-~~~~~~g~~~~l~C~~~g~~P~  160 (228)
T 3bae_H           85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAP---SVYPLAP-VCGDTTGSSVTLGCLVKGYFPE  160 (228)
T ss_dssp             CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCC---EEEEECC------CCSEEEEEEEEEEEBSS
T ss_pred             cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCC---EEEEecc-cccccCCCCEEEEEEEccEeCC
Confidence            99999999999999987543      1   1234677776422 111   1111111 1235689999999999544577


Q ss_pred             c-eeEEeECCEec
Q psy14540        137 L-TISWLKNGLPI  148 (291)
Q Consensus       137 ~-~~~W~~~~~~~  148 (291)
                      + .+.|++++..+
T Consensus       161 p~~v~W~~~~~~~  173 (228)
T 3bae_H          161 PVTLTWNSGSLSS  173 (228)
T ss_dssp             CCEEEEGGGTCCT
T ss_pred             CEEEEEeeCCccc
Confidence            7 99999988654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.82  E-value=2.8e-19  Score=131.01  Aligned_cols=133  Identities=24%  Similarity=0.387  Sum_probs=95.6

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC-CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS-DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. ..+........+                           
T Consensus        11 ~~p~~~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---------------------------   62 (212)
T 2yd1_A           11 RKPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG---------------------------   62 (212)
T ss_dssp             ECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCTTSTTEEEEEETTT---------------------------
T ss_pred             cCCCceEEecCCEEEEEEEE-ccCCCCeEEEEECCEECCCCcceeEEEEcCCC---------------------------
Confidence            34456788999999999999 6888899999999988752 233322211111                           


Q ss_pred             CCCceEEEEeccceEEEEeeeec-CCCeeEEEEeeeCCcc-CCceeEEEEecC-------CCCCCCCccc-ccCCceEEE
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLST-GHSGNYTCVASNTVAS-DNHSSNLRVNVP-------PHIGPFTFGE-LMEGVRTQV  259 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~~~~~~-~~~~~~l~v~~~-------p~~~~~~~~~-~~~g~~v~l  259 (291)
                                  ...|.|.++.. +|+|.|+|.+.|..+. .+..+.|.|..+       |.+...+... +.+|+.++|
T Consensus        63 ------------~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l  130 (212)
T 2yd1_A           63 ------------ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM  130 (212)
T ss_dssp             ------------EEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEE
T ss_pred             ------------eEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEE
Confidence                        23566666666 7777777777776665 566677777654       3443333333 788999999


Q ss_pred             EEEeecCCCCceEEEEECCEEccCC
Q psy14540        260 ACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       260 ~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      .|.+ .+.|.+.|.|+++|..+...
T Consensus       131 ~C~~-~g~p~p~i~W~~~~~~~~~~  154 (212)
T 2yd1_A          131 TCKA-IGNPTPNIYWIKNQTKVDMS  154 (212)
T ss_dssp             CCEE-ECSSCCEEEEEETTEECCTT
T ss_pred             EEEe-ccCCCCeEEEEECCeEcccC
Confidence            9999 88999999999999998653

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.82  E-value=8.1e-19  Score=126.85  Aligned_cols=142  Identities=15%  Similarity=0.310  Sum_probs=103.0

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+..+.|.+.+.|++++..+.......          ..+. ...+..+.|..         
T Consensus         7 ~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~----------~~~~-~~~~~~~~~~~---------   66 (195)
T 2c5d_C            7 GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQ----------TQVP-LGEDEQDDWIV---------   66 (195)
T ss_dssp             ECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEE----------EEEE-CSSSTTSEEEE---------
T ss_pred             cChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCc----------eEEE-Eccccccceee---------
Confidence            345567889999999999994378889999999998876542111          1111 11111111211         


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL  268 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p  268 (291)
                                 ...|.|.++..+|+|.|+|.+.+..+. .+..+.|.|..+|.+...+... +.+|+.++|.|.+ .+.|
T Consensus        67 -----------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p  134 (195)
T 2c5d_C           67 -----------VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQA-QGPP  134 (195)
T ss_dssp             -----------EEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEE-ECSS
T ss_pred             -----------ccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeEC-CCCC
Confidence                       346888888888899999999887654 3455788888888776655544 8899999999999 8889


Q ss_pred             Cc-eEEEEECCEEccCC
Q psy14540        269 PL-SLQWYKNGLAISQP  284 (291)
Q Consensus       269 ~~-~v~W~~~~~~l~~~  284 (291)
                      .| .|.|+++|..+...
T Consensus       135 ~p~~v~W~~~~~~~~~~  151 (195)
T 2c5d_C          135 EPVDLLWLQDAVPLATA  151 (195)
T ss_dssp             CCCEEEEEESSCBSSSS
T ss_pred             CCCEEEEEECCEeccCC
Confidence            88 99999999988653

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.82  E-value=1.6e-20  Score=136.04  Aligned_cols=142  Identities=16%  Similarity=0.166  Sum_probs=98.2

Q ss_pred             eeecCCCceEEEEEee--CCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        116 IKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      +.+..|+.++|.|...  .+.|.+.+.|+|+|.............     ......                  +.....
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~-----~~~~~~------------------~~~~~~   59 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHH-----DVIFIE------------------WPFRGF   59 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEET-----TEEEEC------------------GGGBTT
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCC-----ceEEee------------------ccccce
Confidence            5678999999999531  578899999999875432110000000     000000                  000111


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCCceE
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSL  272 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v  272 (291)
                      ..+........|.|.++..+|+|.|+|.|.|..+.....+.|.|..||.+...+... +.+|+.++|.|.+ .|.|.|.|
T Consensus        60 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~-~G~P~P~v  138 (203)
T 4fa8_A           60 FDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV-NAFPHPHV  138 (203)
T ss_dssp             EEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEE-EEESCCEE
T ss_pred             EEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEc-CCCCCCEE
Confidence            122223345689999999999999999999999888888999998888777665555 8999999999999 89999999


Q ss_pred             EEEECCEEc
Q psy14540        273 QWYKNGLAI  281 (291)
Q Consensus       273 ~W~~~~~~l  281 (291)
                      +|++++..+
T Consensus       139 ~W~~~~~~~  147 (203)
T 4fa8_A          139 QWLMPEGVE  147 (203)
T ss_dssp             EECCC----
T ss_pred             EEEECCeee
Confidence            999876544

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.82  E-value=3.2e-20  Score=144.91  Aligned_cols=182  Identities=15%  Similarity=0.257  Sum_probs=107.8

Q ss_pred             eeecceeeeecCCcEEEEEEecC-CCCC---eeEEEECC-eecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATG-NPTP---HISWKLDG-YPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~---~v~W~~~~-~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +..|....+.+|+.++|.|.+.+ .|.+   .|.|++++ ..+........  ....+  ...+.|.|.+++.+|+|.|+
T Consensus       117 ~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~--~~~~g~~~~~~~L~I~~~~~~D~G~Y~  194 (323)
T 2wqr_A          117 LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE--KQRNGTLTVTSTLPVGTRDWIEGETYQ  194 (323)
T ss_dssp             ECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE--ECTTSCEEEEEEEECCHHHHHTTCCEE
T ss_pred             EcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc--cCCCCCEEEEEEEEECHHHccCCCCEE
Confidence            34445556789999999999987 4555   89999964 44432111100  00011  13467999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcC---CCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCce
Q psy14540         79 CTATNRVGSQTHSADMRVYDA---PGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEI  154 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~  154 (291)
                      |.+.+..+..  ...+.|...   ...|  .... ...... ...|+.++|.|.+.+.+|. ..+.|+++|..+..... 
T Consensus       195 C~a~n~~~~~--~~~~~v~~~~~~~~~P--~v~~-~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~-  267 (323)
T 2wqr_A          195 CRVTHPHLPR--ALMRSTTKTSGPRAAP--EVYA-FATPEW-PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARH-  267 (323)
T ss_dssp             EEEECTTSSS--CEEEEECCCCSCCBCC--EEEE-EECCCC-TTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGE-
T ss_pred             EEEECCCCCC--CeeeEEEccCCCCCCC--EEEE-eCCChH-HhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCce-
Confidence            9999865432  223444321   1111  1111 111111 1239999999999543554 48999999998754321 


Q ss_pred             EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540        155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS  228 (291)
Q Consensus       155 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  228 (291)
                      ...            .......|.|..                    .+.|.|..+..+|+|.|+|.|.|....
T Consensus       268 ~~~------------~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          268 STT------------QPRKTKGSGFFV--------------------FSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEC------------CCEECSSSSEEE--------------------EEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             eec------------CcccCCCCcEEE--------------------EEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            100            001111233332                    245777777778888888888887654

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.82  E-value=9.7e-20  Score=137.31  Aligned_cols=179  Identities=17%  Similarity=0.218  Sum_probs=90.0

Q ss_pred             cCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-----CceeEEeE
Q psy14540         69 VRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-----PLTISWLK  143 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~  143 (291)
                      ++..|+|.|+|.+.   |.......+.+...+       .....+..+.+.+|+.++|.|.+ .+.|     .+.+.|++
T Consensus        11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~~-------~~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k   79 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSFTNYWMNWLREL-------VMTQSPLTLSVTIGQPASISCKS-SQSLLYSNGKTYLNWLL   79 (254)
T ss_dssp             ------------------------------CC-------CEEEECSEEEECTTSCEEEEEEE-SSCCBCSSSCBCEEEEE
T ss_pred             ecCCccEEEEEcCc---hhhhhhhhhheeece-------eEEeCCceEEecCCCcEEEEeec-cCcccccCCCCceEEEE
Confidence            78899999999997   333333333332211       12233456789999999999999 5666     48999998


Q ss_pred             CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEee
Q psy14540        144 NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS  223 (291)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~  223 (291)
                      ++....  ..            +.+.....           ... .....+.+........|.|.++..+|+|.|.|.|.
T Consensus        80 ~~~g~~--~~------------~~~~~~~~-----------~~~-~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  133 (254)
T 2c1o_A           80 QRPGQS--PK------------RLIYLVSK-----------LDS-GDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQG  133 (254)
T ss_dssp             ECTTSC--CE------------EEEETTTE-----------ECT-TCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             eCCCCC--ce------------EEEEeccc-----------cCC-CccceEEEecCCCEEEEEECcCCcccCEEEEEEEE
Confidence            431100  00            00000000           000 00011222222335579999999999999999998


Q ss_pred             eCCcc-CCceeEEEEec---CCCCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEECCEEccCC
Q psy14540        224 NTVAS-DNHSSNLRVNV---PPHIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYKNGLAISQP  284 (291)
Q Consensus       224 ~~~~~-~~~~~~l~v~~---~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~~~  284 (291)
                      |..+. ......+.|..   +|.+....... ...|+.++|.|.+.+.+|+ +.|.|+|||.++...
T Consensus       134 n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  200 (254)
T 2c1o_A          134 SHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG  200 (254)
T ss_dssp             SSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTT
T ss_pred             cCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCc
Confidence            87532 22233555553   45555433322 4468899999999443555 579999999988665

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.82  E-value=3.5e-20  Score=137.52  Aligned_cols=195  Identities=17%  Similarity=0.243  Sum_probs=113.7

Q ss_pred             CCcce-eecceeeeecCCcEEEEEEecC-CCC--CeeEEEECCeec-CCCeeEeceEEeecc--ceEEEEEEeecCCCCC
Q psy14540          2 HPQLI-YKFIQQTLQPGPPVSLKCIATG-NPT--PHISWKLDGYPL-AGDRFVMGQYMSLHG--DVISHVNISSVRVEDS   74 (291)
Q Consensus         2 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~~~--~~v~W~~~~~~~-~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~   74 (291)
                      +|.+. ..|....+.+|+.++|.|.+.+ .|.  ..+.|+++|..+ .......  .....+  ...+.|.|.+++.+|.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~--~~~~~g~~~~~s~L~I~~~~~~D~   89 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVL--QEHFNGTYSASSAVPVSTQDWLSG   89 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEE--EECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccc--eECCCCcEEEEEEEEecchhccCC
Confidence            45554 5666667889999999999987 463  499999999876 3211100  000111  1346799999999999


Q ss_pred             eEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCc
Q psy14540         75 GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAE  153 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~  153 (291)
                      |.|+|.+.+..+..  ...+.|................+....+ .+..++|.|.+.+.+| .+.+.|+++|..+.....
T Consensus        90 g~Y~C~~~~~~~~~--~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~  166 (231)
T 2w59_A           90 ERFTCTVQHEELPL--PLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEF  166 (231)
T ss_dssp             CCEEEEEECTTCSS--CEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGC
T ss_pred             CEEEEEEEcCCCCC--ceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCccc
Confidence            99999999876542  3334443221000001111111111222 3557999999954455 479999999998865431


Q ss_pred             eEEeccCCceEEEEEeeCCC----CCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC
Q psy14540        154 ITIRSSGEYTSSLSIATLST----GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD  229 (291)
Q Consensus       154 ~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  229 (291)
                      ....        ........    .|.|.|..                    .+.|.|.....+|+|.|+|.|.|.....
T Consensus       167 ~~~~--------~~~~~~~~~~~~~d~gt~~~--------------------~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          167 VTTA--------VLPEERTANGAGGDGDTFFV--------------------YSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             EECC--------CEECCTTSCC---CCCCEEE--------------------EEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             ccCc--------cccCcccccccCCCCCeEEE--------------------EEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence            1100        00000000    12244433                    2457777777778888888888776443

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.82  E-value=5e-20  Score=137.09  Aligned_cols=186  Identities=14%  Similarity=0.213  Sum_probs=108.7

Q ss_pred             CCcceeecceee--eecCCcEEEEEEecCC---CCC-eeEEEECCeecCCCeeEeceEEeec--cceEEEEEEeecCCCC
Q psy14540          2 HPQLIYKFIQQT--LQPGPPVSLKCIATGN---PTP-HISWKLDGYPLAGDRFVMGQYMSLH--GDVISHVNISSVRVED   73 (291)
Q Consensus         2 ~p~~~~~~~~~~--v~~g~~v~l~C~~~~~---~~~-~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d   73 (291)
                      +|.+...+....  +.+|++++|.|.+.+.   |.+ .|.|++++..+........ .....  ....+.|.|.+++.+|
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~-~~~~~~~~~~~s~L~I~~~~~~D   93 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAP-EKQSNSTLRSVSELPIVERDWLN   93 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCC-EECTTSCEEEEEEEECCHHHHHT
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccc-eEcCCCcEEEEEEEEEEhhHccC
Confidence            355544444444  7899999999999875   655 8999998866542211100 00011  1234679999999999


Q ss_pred             CeEEEEEEeCCCCceeeeeeEEE-EcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCC
Q psy14540         74 SGIYQCTATNRVGSQTHSADMRV-YDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD  151 (291)
Q Consensus        74 ~G~y~C~~~~~~~~~~~~~~l~v-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~  151 (291)
                      +|.|+|.+.+..+.......+.. ......|   .......... ...|+.++|.|.+.+.+|. ..+.|+++|..+...
T Consensus        94 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P---~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  169 (239)
T 1i1c_A           94 GKTFKCKVNSGAFPAPIEKSISKPEGTPRGP---QVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENY  169 (239)
T ss_dssp             TCCEEEEEECSSSSSCEEEEECCCSSCCBCC---EEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE
T ss_pred             CCeEEEEEecccCCCCcEEEEecCCCCCcCC---EEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCc
Confidence            99999999987664322212211 0111111   1111111111 2347889999999544665 589999999887421


Q ss_pred             CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540        152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA  227 (291)
Q Consensus       152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  227 (291)
                      ..               ........|.|..                    .+.|.+.....+++|.|+|.|.|...
T Consensus       170 ~~---------------~~~~~~~dgt~~~--------------------~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          170 KN---------------TPPTMDTDGSYFL--------------------YSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             EE---------------CCCEECTTSCEEE--------------------EEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ee---------------cCceECCCCCEEE--------------------EEEEEEChhhcCCCCEEEEEEECCCC
Confidence            10               0011123344543                    23455655556678999999988764

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.82  E-value=4.5e-19  Score=130.14  Aligned_cols=138  Identities=20%  Similarity=0.284  Sum_probs=87.8

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------C-Cee-----EeceEEee--ccceEEEEEEee
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------G-DRF-----VMGQYMSL--HGDVISHVNISS   68 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------~-~~~-----~~~~~~~~--~~~~~~~l~i~~   68 (291)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|+++.  ....      . ...     ...+....  .....++|.|.+
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (215)
T 1c5d_H            5 LESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNS   84 (215)
T ss_dssp             EEECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESS
T ss_pred             EcCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECC
Confidence            346778899999999999998743  5789999853  2110      0 000     00111111  123457899999


Q ss_pred             cCCCCCeEEEEEEeCCCC---ceeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeE
Q psy14540         69 VRVEDSGIYQCTATNRVG---SQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLK  143 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~~~~---~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~  143 (291)
                      ++.+|+|.|.|.+.+..+   .....+.|.|...+ ..|   ......+. ..+.+|+.++|.|.+...+|.+ .+.|++
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P---~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  160 (215)
T 1c5d_H           85 LQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAP---SVYPLAPG-CGDTTSSTVTLGCLVKGYFPEPVTVTWNS  160 (215)
T ss_dssp             CCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCC---CEEEECCC-SSCCCCSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCC---eEEeccCC-hhhccCCcEEEEEEEeeeEcCCcEEEEcc
Confidence            999999999999987542   12334677776422 112   11111111 2346899999999996445877 999999


Q ss_pred             CCEec
Q psy14540        144 NGLPI  148 (291)
Q Consensus       144 ~~~~~  148 (291)
                      ++..+
T Consensus       161 ~g~~~  165 (215)
T 1c5d_H          161 GALSS  165 (215)
T ss_dssp             GTTCC
T ss_pred             CCccC
Confidence            88654

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.82  E-value=7.7e-20  Score=118.06  Aligned_cols=95  Identities=25%  Similarity=0.487  Sum_probs=80.5

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +||.|+..|.++.+.+|+.+.|.|.+.+.|.+.|.|+|+|..+. ..++.+.     .....++|.|.+++.+|+|.|+|
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C   86 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFP-----ADGAEHGLLLTAALPTDAGVYVC   86 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECC-----EETTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEe-----ecCceEEEEEecCChhhCEEEEE
Confidence            37899999999999999999999999999999999999999987 4444332     23345779999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEcCC
Q psy14540         80 TATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      .+.|..|.....+.|.|..+|
T Consensus        87 ~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           87 RARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             EEEETTEEEEEEEEEEEEC--
T ss_pred             EEEECCCEEEEEEEEEEEcCC
Confidence            999999998888899887643

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.81  E-value=3.6e-20  Score=135.22  Aligned_cols=185  Identities=14%  Similarity=0.255  Sum_probs=102.2

Q ss_pred             Ccceeecceeee--ecCCcEEEEEEecCCC----CCeeEEEECCeecCCCeeEeceEEeeccc--eEEEEEEeecCCCCC
Q psy14540          3 PQLIYKFIQQTL--QPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRFVMGQYMSLHGD--VISHVNISSVRVEDS   74 (291)
Q Consensus         3 p~~~~~~~~~~v--~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~   74 (291)
                      |.+...|....+  .+|++++|.|.+.+.+    ...|.|+|++..+....... ......+.  ....|.|......|+
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~-~~~~~~g~~~~~~~l~i~~~d~~d~   80 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP-REEQYNSTYRVVSVLTVLHQDWLNG   80 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECC-CEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCC-ceeccCCcEEEEEEEEEEHHHccCC
Confidence            555555544434  7999999999998743    35899999998765322111 01111111  123344444445569


Q ss_pred             eEEEEEEeCCCCceeeeeeEEEE-cCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCC
Q psy14540         75 GIYQCTATNRVGSQTHSADMRVY-DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDA  152 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~~~~l~v~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~  152 (291)
                      |.|+|.+.+..+.......+.+. .....|   ......+....+ .|..++|.|.+.+.+|. +.+.|+++|..+....
T Consensus        81 g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P---~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  156 (207)
T 1l6x_A           81 KEYKCKVSNKALPAPIEKTISKAKGQPREP---QVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK  156 (207)
T ss_dssp             CCEEEEEECTTSSSCEEEEECCCCSCCBCC---EEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred             ceEEEEEEcCcCCcceEEEeccCCCCCcCC---EEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEECCeeccCcc
Confidence            99999999876653222222110 111111   111112221223 45669999999544565 4999999998764211


Q ss_pred             ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540        153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA  227 (291)
Q Consensus       153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  227 (291)
                      .               ........|.|..                    ...|.+.....+|+|.|+|.|.|...
T Consensus       157 ~---------------~~~~~~~~gt~~~--------------------~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          157 T---------------TPPVLDSDGSFFL--------------------YSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             E---------------CCCEECTTSCEEE--------------------EEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             c---------------cCceECCCCCEEE--------------------EEEEEECHHHcCCCCEEEEEEEcCCc
Confidence            0               0011122334432                    23455555556678888888888763

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.81  E-value=1.2e-18  Score=133.72  Aligned_cols=134  Identities=18%  Similarity=0.335  Sum_probs=86.4

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISH   63 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~   63 (291)
                      ...|....+.+|++++|.|.+.+.+  .+.+.|+++.  ..+.                  ..++..   ........++
T Consensus        26 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~s  102 (291)
T 2gki_A           26 LQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATL---TSDKSSSTAY  102 (291)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCE---EEEGGGTEEE
T ss_pred             EEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEE---EEeCCCCEEE
Confidence            3456678899999999999998755  5789999953  1110                  011110   0111234578


Q ss_pred             EEEeecCCCCCeEEEEEEeCCC-Cc----eeeeeeEEEEcC-----------CCCCcccceeccCCcceeecCCCceEEE
Q psy14540         64 VNISSVRVEDSGIYQCTATNRV-GS----QTHSADMRVYDA-----------PGQPQDVKLVTSNSRSIKVHSGDRAGVQ  127 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~~~~~-~~----~~~~~~l~v~~~-----------~~~~~~~~~~~~~~~~~~~~~g~~~~l~  127 (291)
                      |+|.+++.+|+|.|.|.+.+.. +.    ....+.|.|...           +..  ........+....+.+|+.++|.
T Consensus       103 L~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~--~~~~v~~~p~~~~v~~G~~v~L~  180 (291)
T 2gki_A          103 MELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGG--SDLVMSQSPSSLAVSAGEKVTMS  180 (291)
T ss_dssp             EEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC------------------CCCEECSCSEEEEETTSCEEEE
T ss_pred             EEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCC--ccceEEcCCCEEEEcCCCcEEEE
Confidence            9999999999999999998653 11    122346666651           100  01112233445678899999999


Q ss_pred             EEeeCCCCCc------eeEEeECC
Q psy14540        128 CLVTKGDPPL------TISWLKNG  145 (291)
Q Consensus       128 C~~~~~~p~~------~~~W~~~~  145 (291)
                      |.+ .+.+.+      .+.|+++.
T Consensus       181 C~~-~~~~~~~~~~~~~v~W~k~~  203 (291)
T 2gki_A          181 CKS-SQSLFNSRTRKNYLAWYQQK  203 (291)
T ss_dssp             EEE-SSCCEETTTTEECEEEEEEC
T ss_pred             EEc-CCccccccccceeEEEEEEC
Confidence            999 566654      89999963

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.81  E-value=1.1e-18  Score=129.54  Aligned_cols=140  Identities=21%  Similarity=0.217  Sum_probs=84.7

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------C-CeeE-----eceEEee--ccceEEEEEEee
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------G-DRFV-----MGQYMSL--HGDVISHVNISS   68 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------~-~~~~-----~~~~~~~--~~~~~~~l~i~~   68 (291)
                      ..|....+.+|++++|.|.+.+.+  ...+.|++..  ....      . ....     ..+....  .....++|.|.+
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   84 (232)
T 1dn0_B            5 QQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSS   84 (232)
T ss_dssp             EEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECC
Confidence            446667899999999999998653  5789999842  2110      0 0000     0111111  123457899999


Q ss_pred             cCCCCCeEEEEEEeCCCC------ceeeeeeEEEEcCC-CCCcccceeccCCcceeecCC-CceEEEEEeeCCCCCc-ee
Q psy14540         69 VRVEDSGIYQCTATNRVG------SQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSG-DRAGVQCLVTKGDPPL-TI  139 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~~~~------~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g-~~~~l~C~~~~~~p~~-~~  139 (291)
                      ++.+|+|.|.|.+.+..+      .....+.|.|...+ ..|  .... ..+. ..+..| +.++|.|.+...+|.+ .+
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P--~v~~-~~p~-~~~~~g~~~v~L~C~~~g~~P~p~~v  160 (232)
T 1dn0_B           85 VTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAP--TLFP-LVSC-ENSPSDTSSVAVGCLAQDFLPDSITF  160 (232)
T ss_dssp             CCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCC--EEEE-EECC-------CCSEEEEEEEEEEBSSCCEE
T ss_pred             CCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCC--ceEE-eccc-cccCCCCCcEEEEEEEEEEeCCCeEE
Confidence            999999999999983211      12234577777532 112  1111 1111 224478 9999999996555776 99


Q ss_pred             EEeE-CCEeccC
Q psy14540        140 SWLK-NGLPILS  150 (291)
Q Consensus       140 ~W~~-~~~~~~~  150 (291)
                      .|++ +|..+..
T Consensus       161 ~W~~~~g~~l~~  172 (232)
T 1dn0_B          161 SWKYKNNSDISS  172 (232)
T ss_dssp             EEEETTSCEECC
T ss_pred             EEEcCCCCceee
Confidence            9999 8877643

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.81  E-value=3e-19  Score=134.74  Aligned_cols=140  Identities=19%  Similarity=0.277  Sum_probs=87.6

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC-----C---CeeE-----eceEEee--ccceEEEEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA-----G---DRFV-----MGQYMSL--HGDVISHVNI   66 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----~---~~~~-----~~~~~~~--~~~~~~~l~i   66 (291)
                      ...|....+.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.     .   ....     ..+....  ......+|+|
T Consensus        10 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   89 (261)
T 2xqy_G           10 LQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQL   89 (261)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             EECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEE
Confidence            3456778899999999999998755  5789999863  2110     0   0000     0011111  1234578999


Q ss_pred             eecCCCCCeEEEEEEeCCCC---ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEe
Q psy14540         67 SSVRVEDSGIYQCTATNRVG---SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWL  142 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~  142 (291)
                      .+++.+|+|.|.|.+.+..+   .....+.|.|...+..++  ......+. ..+.+|+.++|.|.+...+|.+ .+.|+
T Consensus        90 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P--~v~~~~p~-~~v~~g~~v~L~C~~~g~~P~~i~v~W~  166 (261)
T 2xqy_G           90 SSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAP--SVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWN  166 (261)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCC--EEEEECCC-CC--CCSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             cCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCC--eEEEeCCC-ccccCCCcEEEEEEEEeEeCCCCEEEEe
Confidence            99999999999999987532   122345677765221111  11111111 2356799999999995445766 99999


Q ss_pred             ECCEec
Q psy14540        143 KNGLPI  148 (291)
Q Consensus       143 ~~~~~~  148 (291)
                      +++..+
T Consensus       167 k~g~~~  172 (261)
T 2xqy_G          167 SGSLSS  172 (261)
T ss_dssp             GGTCCT
T ss_pred             cCCCcC
Confidence            998764

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.81  E-value=1.9e-19  Score=135.55  Aligned_cols=135  Identities=20%  Similarity=0.306  Sum_probs=84.3

Q ss_pred             eecceeeeecCCcEEEEEEecC--CCCCeeEEEECC--ee---c---C------------CCeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YP---L---A------------GDRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~---~---~------------~~~~~~~~~~~~~~~~~~~l   64 (291)
                      ..|..+.+.+|++++|.|.+.+  .+...+.|+|..  ..   +   .            .+++..   ........++|
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~sL   81 (253)
T 3liz_H            5 VESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTI---SRDNAKNTLFL   81 (253)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEE---EEEGGGTEEEE
T ss_pred             EcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEE---EEeCCCCEEEE
Confidence            4566788999999999999976  235679999842  11   1   0            011111   11122356779


Q ss_pred             EEeecCCCCCeEEEEEEeCCC----CceeeeeeEEEEc-CCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-e
Q psy14540         65 NISSVRVEDSGIYQCTATNRV----GSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-T  138 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~~~~----~~~~~~~~l~v~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~  138 (291)
                      +|.+++.+|+|.|.|.+.+..    ......+.|.|.. ....|   ... .......+..|+.++|.|.+.+++|.+ .
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P---~i~-~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  157 (253)
T 3liz_H           82 QMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPP---SVY-PLAPGSAAQTNSMVTLGCLVKGYFPEPVT  157 (253)
T ss_dssp             EECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCC---EEE-EECC------CCEEEEEEEEEEEBSSCCE
T ss_pred             EECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCC---eEE-EecCCcccCCCCcEEEEEEEeeEeCCCeE
Confidence            999999999999999998642    2234445677763 22222   111 111223455799999999996547766 8


Q ss_pred             eEEeECCEec
Q psy14540        139 ISWLKNGLPI  148 (291)
Q Consensus       139 ~~W~~~~~~~  148 (291)
                      +.|++++..+
T Consensus       158 v~W~~~~~~~  167 (253)
T 3liz_H          158 VTWNSGSLSS  167 (253)
T ss_dssp             EEEGGGTBCT
T ss_pred             EEEEeCCeec
Confidence            9999988643

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.81  E-value=1.8e-18  Score=132.06  Aligned_cols=137  Identities=18%  Similarity=0.281  Sum_probs=87.2

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC-----C-------------CeeEeceEEeeccce
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA-----G-------------DRFVMGQYMSLHGDV   60 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~-----~-------------~~~~~~~~~~~~~~~   60 (291)
                      +.+.. |....+.+|++++|.|.+.+.  +.+.+.|++..  ....     .             .++..   .......
T Consensus         2 ~~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~   77 (280)
T 3fku_X            2 VQLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTI---TADQSTR   77 (280)
T ss_dssp             CCEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEE---EEETTTT
T ss_pred             CeEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEE---EEeCCCC
Confidence            44556 888899999999999999864  56789999842  1111     0             01111   0112334


Q ss_pred             EEEEEEeecCCCCCeEEEEEEeCC---------CCceeeeeeEEEEc-CCCC-------CcccceeccCCcceeecCCCc
Q psy14540         61 ISHVNISSVRVEDSGIYQCTATNR---------VGSQTHSADMRVYD-APGQ-------PQDVKLVTSNSRSIKVHSGDR  123 (291)
Q Consensus        61 ~~~l~i~~~~~~d~G~y~C~~~~~---------~~~~~~~~~l~v~~-~~~~-------~~~~~~~~~~~~~~~~~~g~~  123 (291)
                      .++|.|.+++.+|+|.|.|.+.+.         .........|.|.. ....       ..........+. ..+.+|+.
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~  156 (280)
T 3fku_X           78 TAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQT  156 (280)
T ss_dssp             EEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCC
T ss_pred             EEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCC
Confidence            578999999999999999999875         12233445666655 1100       000111223333 78899999


Q ss_pred             eEEEEEeeCCCC-CceeEEeEC
Q psy14540        124 AGVQCLVTKGDP-PLTISWLKN  144 (291)
Q Consensus       124 ~~l~C~~~~~~p-~~~~~W~~~  144 (291)
                      ++|.|.+....+ .+.+.|++.
T Consensus       157 v~L~C~~~~~~~~~~~v~W~r~  178 (280)
T 3fku_X          157 ATLTCTGNSNNVGNQGAAWLQQ  178 (280)
T ss_dssp             EEEEEECCCCCCCTTCCEEEEE
T ss_pred             EEEEEEecCCCCCCceEEEEEE
Confidence            999999943244 479999983

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.81  E-value=3.8e-19  Score=128.72  Aligned_cols=131  Identities=21%  Similarity=0.403  Sum_probs=98.2

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+......+                               
T Consensus        13 ~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~-------------------------------   60 (197)
T 3lcy_A           13 EMKDVTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKELIQSRKYKMSSDG-------------------------------   60 (197)
T ss_dssp             CCCCEEEETTSEEEEEEEE-EEESCCEEEEEETTEEECCCSSEEEEESS-------------------------------
T ss_pred             cCCceEEeCCCcEEEEEEE-ecCCCCEEEEEECCEECCCCccEEEEeCC-------------------------------
Confidence            3455788899999999999 57888999999999888655444332211                               


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCC----CcccccCCceEEEEEEeecCC
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPF----TFGELMEGVRTQVACVVQSGD  267 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~----~~~~~~~g~~v~l~C~~~~~~  267 (291)
                               ....|.|.++..+|+|.|+|.+.|..+.......|.|..+|.+...    ....+.+|+.+.|.|.+ .+.
T Consensus        61 ---------~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~  130 (197)
T 3lcy_A           61 ---------RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY-IGR  130 (197)
T ss_dssp             ---------SEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEE-EEE
T ss_pred             ---------CEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEE-eee
Confidence                     1235777777778888888888877777667777777765544432    22227899999999999 889


Q ss_pred             CCceEEEEECCEEccCC
Q psy14540        268 LPLSLQWYKNGLAISQP  284 (291)
Q Consensus       268 p~~~v~W~~~~~~l~~~  284 (291)
                      |.+.+.|+++|..+...
T Consensus       131 p~p~v~W~~~~~~~~~~  147 (197)
T 3lcy_A          131 PVPAMTWFHGQKLLQNS  147 (197)
T ss_dssp             SCCEEEEEETTEECCCC
T ss_pred             eCCeeEEeECCEECCCC
Confidence            99999999999998654

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.81  E-value=9.9e-19  Score=130.39  Aligned_cols=146  Identities=16%  Similarity=0.221  Sum_probs=92.6

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC-------CCeeE----eceEEee-ccceEEEEEEeecC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA-------GDRFV----MGQYMSL-HGDVISHVNISSVR   70 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-------~~~~~----~~~~~~~-~~~~~~~l~i~~~~   70 (291)
                      ++..|..+.+.+|++++|.|.+. .+.+.+.|+|++  ....       .....    ..+.... .....++|.|.+++
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   80 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT   80 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred             cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence            56678888999999999999985 457889999853  1110       00000    0011111 12345789999999


Q ss_pred             CCCCeEEEEEEeCCCC-----ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeEC
Q psy14540         71 VEDSGIYQCTATNRVG-----SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKN  144 (291)
Q Consensus        71 ~~d~G~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~  144 (291)
                      .+|+|.|.|.+.+..+     .......|.|......+.........+....+.+|+.++|.|.+.+.+|. +.+.|+++
T Consensus        81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  160 (238)
T 1bec_A           81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  160 (238)
T ss_dssp             GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred             cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence            9999999999987532     12234567776532111111122222333445689999999999544575 49999999


Q ss_pred             CEeccCC
Q psy14540        145 GLPILSD  151 (291)
Q Consensus       145 ~~~~~~~  151 (291)
                      |..+...
T Consensus       161 g~~~~~~  167 (238)
T 1bec_A          161 GKEVHSG  167 (238)
T ss_dssp             TEEECTT
T ss_pred             CEECCCc
Confidence            9887543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.81  E-value=6.6e-19  Score=129.04  Aligned_cols=132  Identities=26%  Similarity=0.341  Sum_probs=91.7

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..............                             
T Consensus        12 ~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~-----------------------------   61 (212)
T 2yd6_A           12 TPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS-----------------------------   61 (212)
T ss_dssp             CCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCTTEEEEEEGGGT-----------------------------
T ss_pred             CcceeEEecCCeEEEEEEE-eeCCCCEEEEEECCcCCCCCceeEEEEcCCC-----------------------------
Confidence            3455778899999999999 5888899999999988764332221111111                             


Q ss_pred             CceEEEEeccceEEEEeee-ecCCCeeEEEEeeeCCccCCceeEEEEecC-------CCCCCCCccc-ccCCceEEEEEE
Q psy14540        192 HSSNLRVNEYTSSLSIATL-STGHSGNYTCVASNTVASDNHSSNLRVNVP-------PHIGPFTFGE-LMEGVRTQVACV  262 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~-~~~g~~v~l~C~  262 (291)
                                ...|.|.++ ..+|+|.|+|.+.|..+.....+.|.|..+       |.+...+... +.+|+.++|.|.
T Consensus        62 ----------~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~  131 (212)
T 2yd6_A           62 ----------GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCA  131 (212)
T ss_dssp             ----------EEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEE
T ss_pred             ----------ceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEE
Confidence                      234666666 366777777777777666666667777543       3333333333 788999999999


Q ss_pred             eecCCCCceEEEEECCEEccCC
Q psy14540        263 VQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       263 ~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      + .|.|.+.+.|+++|..+...
T Consensus       132 ~-~g~p~p~v~W~~~g~~l~~~  152 (212)
T 2yd6_A          132 A-SGNPDPEITWFKDFLPVDTS  152 (212)
T ss_dssp             E-ECSSCCEEEEEETTEEC---
T ss_pred             e-cCCCCCeEEEEECCccccCc
Confidence            9 88999999999999998654

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.80  E-value=2.4e-19  Score=129.52  Aligned_cols=131  Identities=21%  Similarity=0.398  Sum_probs=96.6

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      .+....+.+|+.++|.|.+ .+.|.+.+.|++++..+....  +....                                
T Consensus        11 ~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~--------------------------------   57 (194)
T 2a38_A           11 PLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQIS--------------------------------   57 (194)
T ss_dssp             CCCCEEEETTSCEEEEEEE-EEESCCEEEEEESSSBCCTTTSTTCEEE--------------------------------
T ss_pred             cCCceEEECCCEEEEEEEE-EecCCCEEEEEECCEEcccccCCceEEE--------------------------------
Confidence            3455788899999999998 688888999999998775442  11111                                


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe---cCCCCCCCCccc-ccCCceEEEEEEeec
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN---VPPHIGPFTFGE-LMEGVRTQVACVVQS  265 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~-~~~g~~v~l~C~~~~  265 (291)
                              .......|.|.++..+|+|.|+|.+.|..+.......|.|.   .+|.+...+... +.+|+.+.|.|.+ .
T Consensus        58 --------~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~  128 (194)
T 2a38_A           58 --------FSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRV-T  128 (194)
T ss_dssp             --------EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEE-E
T ss_pred             --------eCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEE-E
Confidence                    11123467777777788888888888777666666677776   345544444333 8899999999999 8


Q ss_pred             CCCCceEEEEECCEEccCC
Q psy14540        266 GDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       266 ~~p~~~v~W~~~~~~l~~~  284 (291)
                      +.|.+.+.|+++|..+...
T Consensus       129 g~p~~~v~W~~~~~~~~~~  147 (194)
T 2a38_A          129 GIPTPVVKFYRDGAEIQSS  147 (194)
T ss_dssp             EESCCEEEEEETTEECCCS
T ss_pred             EecCCeEEEEECCEECCCC
Confidence            8899999999999998654

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.80  E-value=5.9e-19  Score=132.75  Aligned_cols=198  Identities=14%  Similarity=0.182  Sum_probs=116.3

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--ee---cC---C-Ce-e---EeceEEeec-cceEEEEEEee
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YP---LA---G-DR-F---VMGQYMSLH-GDVISHVNISS   68 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~---~~---~-~~-~---~~~~~~~~~-~~~~~~l~i~~   68 (291)
                      +.+...|..+.+.+|++++|.|.+. .+.+.+.|++..  ..   +.   . .. .   ...+..... ....++|.|.+
T Consensus         4 ~~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~   82 (252)
T 1oga_E            4 GGITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTS   82 (252)
T ss_dssp             -CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECS
T ss_pred             ccceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECc
Confidence            3566778888999999999999985 457889999853  11   10   0 00 0   001111111 12345799999


Q ss_pred             cCCCCCeEEEEEEeCCC---CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeEC
Q psy14540         69 VRVEDSGIYQCTATNRV---GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKN  144 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~  144 (291)
                      ++.+|+|.|.|.+.+..   ........|.|......+.........+....+.+|+.++|.|.+...+|. +.+.|+++
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  162 (252)
T 1oga_E           83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  162 (252)
T ss_dssp             CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence            99999999999998751   122234457776421100011111122223345578999999999544575 59999999


Q ss_pred             CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecC-CCeeEEEEee
Q psy14540        145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTG-HSGNYTCVAS  223 (291)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-~~g~y~C~~~  223 (291)
                      |..+........         .....+.....|.|..                    .+.|.|...... ++|.|+|.+.
T Consensus       163 g~~l~~~~~~~~---------~~~~~~~~~~~gt~~~--------------------~s~L~i~~~~~~d~~~~ytC~v~  213 (252)
T 1oga_E          163 GKEVHSGVSTDP---------QPLKEQPALNDSRYSL--------------------SSRLRVSATFWQNPRNHFRCQVQ  213 (252)
T ss_dssp             TEEECSSEEECS---------SCEESCTTSTTCCEEE--------------------EEEEEEEHHHHTCTTCEEEEEEE
T ss_pred             CEECCCCccccc---------ccccccccCCCCCEEE--------------------EEEEEECHHHhccCCCEEEEEEE
Confidence            988754311000         0001122234455543                    235667666553 6788999999


Q ss_pred             eCCccCC
Q psy14540        224 NTVASDN  230 (291)
Q Consensus       224 ~~~~~~~  230 (291)
                      |......
T Consensus       214 ~~~l~~~  220 (252)
T 1oga_E          214 FYGLSEN  220 (252)
T ss_dssp             ECCBCTT
T ss_pred             cCCCCCC
Confidence            9875444

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.80  E-value=1.5e-18  Score=133.31  Aligned_cols=176  Identities=15%  Similarity=0.171  Sum_probs=106.4

Q ss_pred             eeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce-e
Q psy14540         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ-T   89 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~   89 (291)
                      ..+.+|+.+.|.|.+. .|.+.+.|++++.... .....       ...+   +    +...|+|.|+|.+.+..+.. +
T Consensus       105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~-------~~~~---~----~~~~d~G~Y~C~a~n~~~~~~s  169 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYD-------HQRG---F----SGIFEDRSYICKTTIGDREVDS  169 (289)
T ss_dssp             EEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEE-------TTTE---E----EECCCSSEEEEEEEETTEEEEC
T ss_pred             EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeec-------CCcC---e----eeeccCcEEEEEEEeCCceeee
Confidence            5689999999999998 6778899998653222 11111       1111   1    13579999999998655432 3


Q ss_pred             eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEe
Q psy14540         90 HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIA  169 (291)
Q Consensus        90 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~  169 (291)
                      ....+.|... ..|.  ..  ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++................        
T Consensus       170 ~~~~l~v~~~-~~p~--i~--~~~~~~~v~~G~~v~L~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~--------  235 (289)
T 3mjg_X          170 DAYYVYRLQV-SSIN--VS--VNAVQTVVRQGENITLMCIV-IGNEVVNFEWTYPRKESGRLVEPVTDFLLD--------  235 (289)
T ss_dssp             CCEEEEECCC-CCCC--CE--EEESCSEEETTSCEEEEEEE-ESCSSBEEEEECTTSSSSCCCCCEEEESCT--------
T ss_pred             eeEEEEecCC-CCCC--cE--EeCCcceeEcCCCEEEEEEE-CCCCCcceEEEcCCccCCCcccccccccCC--------
Confidence            3345565543 1121  11  11223568899999999999 579999999998776543221111100000        


Q ss_pred             eCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540        170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI  243 (291)
Q Consensus       170 ~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~  243 (291)
                         ...                        .....|.|.++..+|+|.|+|.|.|..|....+..|.|...|.+
T Consensus       236 ---~~~------------------------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  282 (289)
T 3mjg_X          236 ---MPY------------------------HIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG  282 (289)
T ss_dssp             ---TTT------------------------EEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC--
T ss_pred             ---cce------------------------EEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecC
Confidence               000                        01345667777777777777777777777777777777665543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.80  E-value=6.5e-19  Score=128.21  Aligned_cols=127  Identities=15%  Similarity=0.214  Sum_probs=84.9

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC-CceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG-EYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      ...+.+|+.+.|.|.+..+.|.+.+.|++||.++....+..+..+. .+...|.|.++..+|+|.|+|.+.|        
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--------   82 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--------   82 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--------
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--------
Confidence            4678899999999999656899999999999999776665544322 2334455555555555555555554        


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE---------------------ecCCCCCCCCccccc
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV---------------------NVPPHIGPFTFGELM  252 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v---------------------~~~p~~~~~~~~~~~  252 (291)
                                                     ...  .....+.+                     ..+|.+.......+.
T Consensus        83 -------------------------------g~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~  129 (207)
T 3rbs_A           83 -------------------------------GKA--TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT  129 (207)
T ss_dssp             -------------------------------TTE--EEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEE
T ss_pred             -------------------------------CCe--EEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEc
Confidence                                           111  11111110                     013444333323378


Q ss_pred             CCceEEEEEEeecCC-CCceEEEEECCEEccC
Q psy14540        253 EGVRTQVACVVQSGD-LPLSLQWYKNGLAISQ  283 (291)
Q Consensus       253 ~g~~v~l~C~~~~~~-p~~~v~W~~~~~~l~~  283 (291)
                      +|+.+.|.|.+ .|. |.|.|+|+|||.+|..
T Consensus       130 ~g~~v~l~C~v-~g~~P~p~i~W~k~g~~l~~  160 (207)
T 3rbs_A          130 GECNVLLKCKV-ANIKKETHIVWYKDEREISV  160 (207)
T ss_dssp             TTTEEEEEEEE-ESCCTTCEEEEEETTEEECC
T ss_pred             CCCcEEEEEEE-eCCCCCCEEEEEECCEECCC
Confidence            99999999999 777 8999999999999854

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.80  E-value=9.5e-19  Score=126.66  Aligned_cols=132  Identities=23%  Similarity=0.331  Sum_probs=97.5

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... +........                             
T Consensus        10 ~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~-----------------------------   59 (197)
T 2j8h_A           10 ELRNLNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIADGLKYRIQEFKG-----------------------------   59 (197)
T ss_dssp             CCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCCCSSSEEEEEETT-----------------------------
T ss_pred             cCCccEEcCCCEEEEEEEE-eecCCCEEEEEECCEECccCCCcEEEEEcCC-----------------------------
Confidence            3456788999999999999 588899999999998876432 222111111                             


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc------ccccCCceEEEEEEee
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF------GELMEGVRTQVACVVQ  264 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~------~~~~~g~~v~l~C~~~  264 (291)
                                ....|.|.++..+|+|.|+|.+.|..+.....+.|.|..+|.+.....      ..+.+|+.++|.|.+ 
T Consensus        60 ----------~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~-  128 (197)
T 2j8h_A           60 ----------GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF-  128 (197)
T ss_dssp             ----------TEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE-
T ss_pred             ----------CEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE-
Confidence                      123677777788888888888888777777777788776655433321      227889999999999 


Q ss_pred             cCCCCceEEEEECCEEccCC
Q psy14540        265 SGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       265 ~~~p~~~v~W~~~~~~l~~~  284 (291)
                      .+.|.+.+.|+++|..+...
T Consensus       129 ~g~p~p~i~W~~~~~~~~~~  148 (197)
T 2j8h_A          129 SGKPDPVITWQKGQDLIDNN  148 (197)
T ss_dssp             EEESCCEEEEEESSCEECSS
T ss_pred             EecCCCcEEEEECCEEeecC
Confidence            78899999999999988643

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.79  E-value=8.8e-19  Score=131.65  Aligned_cols=176  Identities=24%  Similarity=0.368  Sum_probs=91.1

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------C--CeeE-----eceEEee--ccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------G--DRFV-----MGQYMSL--HGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------~--~~~~-----~~~~~~~--~~~~~~~l~i~   67 (291)
                      ..|....+.+|++++|.|.+.+.+  .+.+.|++..  ..+.      .  ....     ..+....  .....++|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (257)
T 3bn9_D            5 VQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMS   84 (257)
T ss_dssp             EEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEE
T ss_pred             EccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEEC
Confidence            345667899999999999998754  5789999843  1110      0  0000     0111111  12345789999


Q ss_pred             ecCCCCCeEEEEEEeCCCC-------------ceeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCC
Q psy14540         68 SVRVEDSGIYQCTATNRVG-------------SQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG  133 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~-------------~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~  133 (291)
                      +++.+|+|.|.|.+.+..+             .....+.|.|...+ ..|   ......+ ...+.+|+.++|.|.+...
T Consensus        85 ~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P---~v~~~~p-~~~~~~g~~v~L~C~~~g~  160 (257)
T 3bn9_D           85 SLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGP---SVFPLAP-SSKSTSGGTAALGCLVKDY  160 (257)
T ss_dssp             SCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCC---EECCCCC------------CCCEEEEE
T ss_pred             CCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCC---cEEEecC-cccccCCCcEEEEEEEeeE
Confidence            9999999999999987653             11234577776522 112   1111111 1235679999999999644


Q ss_pred             CCCc-eeEEeECCEeccCCCc-eEEeccCCc--eEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        134 DPPL-TISWLKNGLPILSDAE-ITIRSSGEY--TSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       134 ~p~~-~~~W~~~~~~~~~~~~-~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      +|.+ .+.|++++..+..... .....++.+  ...|.|.....+| |.|+|.|.|..
T Consensus       161 ~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~  217 (257)
T 3bn9_D          161 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP  217 (257)
T ss_dssp             BSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGG
T ss_pred             ECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecC
Confidence            5776 9999999876421100 011111111  1234444444445 66666666643

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.79  E-value=2e-18  Score=124.38  Aligned_cols=129  Identities=21%  Similarity=0.397  Sum_probs=97.0

Q ss_pred             CcceeecCCCceEEEEEeeCCCC-CceeEEeE-CCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP-PLTISWLK-NGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~-~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      +....+.+|+.+.|.|.+ .+.+ .+.+.|++ ++..+... .+......                              
T Consensus         9 p~~~~v~~G~~v~l~C~~-~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~------------------------------   57 (191)
T 1epf_A            9 PSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSPNQQRISVVWN------------------------------   57 (191)
T ss_dssp             SSSEEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEECCBSSSEEEEEE------------------------------
T ss_pred             CCCcEEcCCCCEEEEEEC-CCCCCCceEEEEeCCCccccCCCCeEEEEEC------------------------------
Confidence            345678899999999999 5655 88999999 87766532 22221111                              


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGD  267 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~  267 (291)
                               ......|.|.++..+|+|.|+|.+.+.. +..+..+.|.|..+|.+...+... +.+|+.+.|.|.+ .+.
T Consensus        58 ---------~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~  127 (191)
T 1epf_A           58 ---------DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV-VSS  127 (191)
T ss_dssp             ---------ETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEE-ECS
T ss_pred             ---------CCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEE-CCC
Confidence                     1124567777788888888888888876 556677788888888776655544 8999999999999 799


Q ss_pred             CCceEEEEECCEEcc
Q psy14540        268 LPLSLQWYKNGLAIS  282 (291)
Q Consensus       268 p~~~v~W~~~~~~l~  282 (291)
                      |.+.+.|+++|..+.
T Consensus       128 p~~~v~W~~~~~~~~  142 (191)
T 1epf_A          128 LPPTIIWKHKGRDVI  142 (191)
T ss_dssp             SCCEEEEEETTEEGG
T ss_pred             CCCEEEEEECCEEee
Confidence            999999999999885

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.78  E-value=1.5e-18  Score=126.07  Aligned_cols=116  Identities=19%  Similarity=0.217  Sum_probs=88.4

Q ss_pred             cceeecCCCceEEEEEeeCCCCCce-eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ....+.+|+.++|.|.+ .+.|.+. +.|++++..+....                                        
T Consensus        15 ~~~~v~~G~~v~L~C~~-~~~p~~~~v~W~k~g~~l~~~~----------------------------------------   53 (204)
T 3sgj_C           15 QWYRVLEKDSVTLKCQG-AYSPEDQSTQWFHNESLISSQA----------------------------------------   53 (204)
T ss_dssp             CCSEEETTCCEEEEEEC-CSSSSCCCEEEEETTEEESCCS----------------------------------------
T ss_pred             CCeEEECCCCEEEEEcC-CCCCCCcEEEEEECCEEcccCc----------------------------------------
Confidence            33678899999999999 5766654 99999998764321                                        


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceE
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSL  272 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v  272 (291)
                                ..|.|.++..+|+|.|+|.+.|.  ..+..+.|.|..+|.+...+...+.+|+.++|.|.+..+.|.+.|
T Consensus        54 ----------~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v  121 (204)
T 3sgj_C           54 ----------SSYFIDAATVDDSGEYRCQTQLS--TLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKV  121 (204)
T ss_dssp             ----------SEEEESSCCGGGCEEEEEEETTS--BCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEE
T ss_pred             ----------cEEEEecccccCCEEEEEEeCCC--cccccEEEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceE
Confidence                      34667777777778888887763  445567778877776655555558899999999999556677899


Q ss_pred             EEEECCEEcc
Q psy14540        273 QWYKNGLAIS  282 (291)
Q Consensus       273 ~W~~~~~~l~  282 (291)
                      .|+|||..+.
T Consensus       122 ~W~k~g~~~~  131 (204)
T 3sgj_C          122 TYLQNGKGRK  131 (204)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEECCcEee
Confidence            9999999874

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.78  E-value=8.3e-20  Score=133.94  Aligned_cols=191  Identities=15%  Similarity=0.194  Sum_probs=110.4

Q ss_pred             CCcce-eecceeeeecCCcEEEEEEecCCCC---CeeEEEECCeecCCCeeEece-EEeeccceEEEEEEeecCCCCCeE
Q psy14540          2 HPQLI-YKFIQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLAGDRFVMGQ-YMSLHGDVISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~   76 (291)
                      +|.+. ..|....+.+|++++|.|.+.+.+.   +.|.|  ++..+......... .........+.|.|.+++..|+|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~   80 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT   80 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence            56664 4477788899999999999988543   68999  44333321100000 000001144678899999999999


Q ss_pred             EEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceE
Q psy14540         77 YQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEIT  155 (291)
Q Consensus        77 y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~  155 (291)
                      |+|.+.+..+.......+.+......|   ......+....+..|+.++|.|.+.+.+|. +.+.|+++|..+.......
T Consensus        81 Y~C~~~~~~~~~~~~~~i~~~~~~~~P---~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~  157 (214)
T 1ow0_A           81 FTCTAAYPESKTPLTATLSKSGNTFRP---EVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT  157 (214)
T ss_dssp             EEEEECCSSCSSCEEEEEECCSSCCCC---EEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE
T ss_pred             EEEEEecCCCCCceeEeeccCCCCCCC---EEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee
Confidence            999999766543222222211112122   111122222346688999999999544664 5999999998876442111


Q ss_pred             EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540        156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA  227 (291)
Q Consensus       156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  227 (291)
                      ..        . ..+ .....|.|...                    +.|.+.....+++|.|+|.|.|...
T Consensus       158 ~~--------~-~~~-~~~~dgt~~~~--------------------s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          158 WA--------S-RQE-PSQGTTTFAVT--------------------SILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             CC--------C-EEC-SCSSSCCEEEE--------------------EEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             cC--------C-ccc-ccCCCCcEEEE--------------------EEEEECHHHccCCCEEEEEEECCCC
Confidence            00        0 000 01134455442                    3455555555668888888888764

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.78  E-value=6.2e-17  Score=117.44  Aligned_cols=158  Identities=15%  Similarity=0.280  Sum_probs=115.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC---CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP---TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      ++.+.+.|+...+..|+.++|.|.+.+ .|   ...++|+|++..+....              ..|.|..++..|+|.|
T Consensus         2 ~~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT--------------~tLti~s~t~sdSG~Y   67 (304)
T 3shs_A            2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT--------------ATLTVADATSENAGSY   67 (304)
T ss_dssp             CEEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS--------------SEEEESSCCGGGCEEE
T ss_pred             ccEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCc--------------ceEEeeeccccCCeEE
Confidence            356778898899999999999999875 55   45799999998766221              2377888999999999


Q ss_pred             EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEe--eCCCC-----CceeEEeECCEeccC
Q psy14540         78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV--TKGDP-----PLTISWLKNGLPILS  150 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~~~p-----~~~~~W~~~~~~~~~  150 (291)
                      +|.+.+..+.......+.|.....    .......+....+..|..+.|.+.+  ..|.|     ..++.|++++..+..
T Consensus        68 qCvVTDa~Gcs~tSs~VtVT~~a~----l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg  143 (304)
T 3shs_A           68 KVTVQDTDTMTSVESEVFLMEEAE----LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT  143 (304)
T ss_dssp             EEEEEETTTCCEEECCCEEECBCC----EEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES
T ss_pred             EEEEEECCCCeeeeeeEEEeccCc----eeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC
Confidence            999998776654444444443321    1122233455566678889998876  55555     569999999987743


Q ss_pred             CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        151 DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       151 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      .            ..+.+......+.|.|+|.+.+..+.
T Consensus       144 A------------q~lT~sS~TateaG~YtV~VTn~~~~  170 (304)
T 3shs_A          144 T------------QDITIQEFTADKNGVYTVKVWGESED  170 (304)
T ss_dssp             S------------SEEEECSCCGGGCEEEEEEEESSSGG
T ss_pred             c------------cccceeeEEecCCeEEEEEEEcCCCC
Confidence            2            24666777888999999999998663

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.78  E-value=2.6e-18  Score=123.65  Aligned_cols=119  Identities=20%  Similarity=0.320  Sum_probs=93.6

Q ss_pred             eeecC-CCceEEEEEeeCCCCC--ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        116 IKVHS-GDRAGVQCLVTKGDPP--LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       116 ~~~~~-g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ..+.+ |+.+.|.|.+ .+.|.  +.+.|++++..+.......                                     
T Consensus        12 ~~v~~~G~~v~l~C~~-~~~~~~~~~v~W~~~~~~~~~~~~~~-------------------------------------   53 (190)
T 2wv3_A           12 VIIRDSLLPVTLQCNL-TSSSHTLMYSYWTKNGVELTATRKNA-------------------------------------   53 (190)
T ss_dssp             EECCCSSSCEEEEEEE-EECSSCEEEEEEEETTEECTTCCBCC-------------------------------------
T ss_pred             EEEccCCceEEEEEEe-ccCCCCceEEEEEECCEECcccceEe-------------------------------------
Confidence            45556 9999999998 46665  8999999998875432110                                     


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCCce
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLS  271 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~  271 (291)
                              ....|.|.++..+|+|.|+|.+.|. +..+..+.|.|..+|.+...+... +.+|+.+.|.|.+ .|.|.+.
T Consensus        54 --------~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~  123 (190)
T 2wv3_A           54 --------SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS-VGYPHPE  123 (190)
T ss_dssp             --------SEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEE-ECSSCCE
T ss_pred             --------ccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEe-CccCCCc
Confidence                    1346777778888888888888888 777778888898888877655544 8999999999999 8899999


Q ss_pred             EEEEE--CCEEcc
Q psy14540        272 LQWYK--NGLAIS  282 (291)
Q Consensus       272 v~W~~--~~~~l~  282 (291)
                      +.|++  +|..+.
T Consensus       124 i~W~~~~~g~~~~  136 (190)
T 2wv3_A          124 WMWRKKENGVFEE  136 (190)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             eEEEEcCCCceee
Confidence            99999  788763

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.78  E-value=1e-18  Score=111.39  Aligned_cols=95  Identities=21%  Similarity=0.470  Sum_probs=78.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ||.|...|.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.....  ...........++|.|.+++.+|+|.|+|.+
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ--GRFHIENTDDLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGG--GTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeecc--ceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence            78999999999999999999999999999999999999998873210  0111123344578999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEc
Q psy14540         82 TNRVGSQTHSADMRVYD   98 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~   98 (291)
                      .|..|.....+.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           83 GNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999888888888864

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.78  E-value=8.3e-19  Score=126.43  Aligned_cols=130  Identities=25%  Similarity=0.434  Sum_probs=96.5

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... +....                                
T Consensus        12 ~~~~~~~~~~G~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~--------------------------------   58 (192)
T 2iep_A           12 TPLETVDALVEEVATFMCAV-ESYPQPEISWTRNKILIKLFDTRYSIR--------------------------------   58 (192)
T ss_dssp             SCCCEEEEETTSCEEEECCE-EEESCCEEEEEETTEECCTTCTTEEEE--------------------------------
T ss_pred             cCccceeeeCCCcEEEEeeC-CCCCCCeEEEEECCEEccccCccEEEc--------------------------------
Confidence            34455778899999999998 578888999999998775421 22111                                


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGD  267 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~  267 (291)
                                .....|.|.++..+|+|.|+|.+.|..+. ......|.|..+|.+...+... +.+|+.++|.|.+ .+.
T Consensus        59 ----------~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~  127 (192)
T 2iep_A           59 ----------ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT-MGN  127 (192)
T ss_dssp             ----------GGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEE-EEE
T ss_pred             ----------CCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEE-ecc
Confidence                      11235777777777888888888776655 3455667777777666554444 8899999999999 888


Q ss_pred             CCceEEEEECCEEccCC
Q psy14540        268 LPLSLQWYKNGLAISQP  284 (291)
Q Consensus       268 p~~~v~W~~~~~~l~~~  284 (291)
                      |.+.+.|+++|..+...
T Consensus       128 p~~~v~W~~~~~~~~~~  144 (192)
T 2iep_A          128 PKPSVSWIKGDSALREN  144 (192)
T ss_dssp             SCCEEEEEETTEECCCC
T ss_pred             CCceEEEEeCCEEccCC
Confidence            88999999999988654

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.78  E-value=8.3e-18  Score=124.65  Aligned_cols=142  Identities=16%  Similarity=0.183  Sum_probs=89.9

Q ss_pred             ceeecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC------CCe--e----EeceEEee--ccceEEEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA------GDR--F----VMGQYMSL--HGDVISHVNI   66 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~------~~~--~----~~~~~~~~--~~~~~~~l~i   66 (291)
                      +...|..+.+.+|++++|.|.+.+.  +...+.|++..  ..+.      ...  .    ...+....  .+...++|.|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            4566788899999999999999863  56789999842  2110      000  0    00111111  1225578999


Q ss_pred             eecCCCCCeEEEEEEeCC--CC--ceeeeeeEEEEcCC------CCCcccceeccCCcceeecCCCceEEEEEeeCCCCC
Q psy14540         67 SSVRVEDSGIYQCTATNR--VG--SQTHSADMRVYDAP------GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP  136 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~--~~--~~~~~~~l~v~~~~------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~  136 (291)
                      .+++.+|+|.|.|.+.+.  ..  .....+.|.|....      ..|.. ..  ..+....+.+|+.++|.|.+...+|.
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~-~v--~~p~~~~v~~g~~~~L~C~~~g~~P~  160 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKP-TI--FLPSVAETNLHKTGTYLCLLEAFFPD  160 (230)
T ss_dssp             CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCC-CE--ECCCHHHHHHHSCEEEEEEEEEESSC
T ss_pred             CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCc-eE--ECCCchhhccCCcceEEEEEeeecCC
Confidence            999999999999999864  11  12344577776211      01111 11  11233345678999999999655575


Q ss_pred             -ceeEEeE-CCEecc
Q psy14540        137 -LTISWLK-NGLPIL  149 (291)
Q Consensus       137 -~~~~W~~-~~~~~~  149 (291)
                       +.+.|++ +|..+.
T Consensus       161 ~~~v~W~~~~g~~l~  175 (230)
T 1ypz_F          161 VIRVYWKEKDGNTIL  175 (230)
T ss_dssp             CCEEEEECTTSSCBC
T ss_pred             CeEEEEEccCCeEcc
Confidence             6999999 776664

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.78  E-value=4.2e-18  Score=126.51  Aligned_cols=185  Identities=22%  Similarity=0.317  Sum_probs=104.3

Q ss_pred             eecceeeeecCCcEEEEEEecCC--CCCee--EEEECC--ee---c-----CC------------CeeEeceEEeeccce
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHI--SWKLDG--YP---L-----AG------------DRFVMGQYMSLHGDV   60 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v--~W~~~~--~~---~-----~~------------~~~~~~~~~~~~~~~   60 (291)
                      ..|....+.+|++++|.|.+.+.  +...+  .|++..  ..   +     ..            +++..   .......
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~   81 (232)
T 3qhz_H            5 RESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTI---SKDTSKS   81 (232)
T ss_dssp             EEECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEE---EEETTTT
T ss_pred             EcCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEE---EeccCCC
Confidence            34556789999999999999753  22345  999832  11   1     00            11111   1111235


Q ss_pred             EEEEEEeecCCCCCeEEEEEEeCCC--------CceeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEee
Q psy14540         61 ISHVNISSVRVEDSGIYQCTATNRV--------GSQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT  131 (291)
Q Consensus        61 ~~~l~i~~~~~~d~G~y~C~~~~~~--------~~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~  131 (291)
                      .++|.|.+++.+|+|.|.|.+.+..        ........+.|.... ..|   ..... .....+..|+.++|.|.+.
T Consensus        82 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P---~v~~~-~~~~~~~~g~~v~L~C~~~  157 (232)
T 3qhz_H           82 QVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGP---SVFPL-APSSKSTSGGTAALGCLVK  157 (232)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCC---EEEEE-CC-------CEEEEEEEEE
T ss_pred             EEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCC---EEEEe-cccccccCCCcEEEEEEEe
Confidence            5789999999999999999998652        223344566775322 111   11111 1223455799999999996


Q ss_pred             CCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeee
Q psy14540        132 KGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATL  210 (291)
Q Consensus       132 ~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  210 (291)
                      .++| ...+.|++++..+......                ......|.|..                    .+.|.|...
T Consensus       158 ~~~P~~~~v~W~~~g~~~~~~~~~----------------~~~~~~g~~~~--------------------~s~L~i~~~  201 (232)
T 3qhz_H          158 DYFPEPVTVSWNSGALTSGVHTFP----------------AVLQSSGLYSL--------------------SSVVTVPSS  201 (232)
T ss_dssp             EEBSSCCEEEEGGGTBCTTEEECC----------------CEECTTSCEEE--------------------EEEEEEEGG
T ss_pred             eEeCCCeEEEEEECCEecceeecc----------------ceeCCCCCEEE--------------------EEEEEEchh
Confidence            5555 4578899988643211000                00112234432                    245677777


Q ss_pred             ecCCCeeEEEEeeeCCccCCceeEE
Q psy14540        211 STGHSGNYTCVASNTVASDNHSSNL  235 (291)
Q Consensus       211 ~~~~~g~y~C~~~~~~~~~~~~~~l  235 (291)
                      ..+| |.|+|.|.|..+.......|
T Consensus       202 ~~~~-g~ytC~v~~~~~~~~~~~~l  225 (232)
T 3qhz_H          202 SLGT-QTYICNVNHKPSNTKVDKRV  225 (232)
T ss_dssp             GGGT-CCCEEEEEEGGGTEEEEEEC
T ss_pred             hcCC-CEEEEEEEeCCCCccEEEEe
Confidence            7777 88888888876554444433

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.78  E-value=4.4e-18  Score=126.86  Aligned_cols=139  Identities=19%  Similarity=0.227  Sum_probs=82.6

Q ss_pred             eecceeeeecCCcEEEEEEecCCC----CCeeEEEECC--eecCCC-eeE-----------------eceEE--eeccce
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDG--YPLAGD-RFV-----------------MGQYM--SLHGDV   60 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~--~~~~~~-~~~-----------------~~~~~--~~~~~~   60 (291)
                      ..|..+.+.+|++++|.|.+.+.+    ...+.|++..  .....- ...                 ..+..  ......
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   84 (239)
T 3tv3_H            5 QESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKN   84 (239)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGT
T ss_pred             ecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCC
Confidence            446678899999999999998644    4479999832  111000 000                 01111  111234


Q ss_pred             EEEEEEeecCCCCCeEEEEEEeCCCC-------------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEE
Q psy14540         61 ISHVNISSVRVEDSGIYQCTATNRVG-------------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ  127 (291)
Q Consensus        61 ~~~l~i~~~~~~d~G~y~C~~~~~~~-------------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~  127 (291)
                      .++|.|.+++.+|+|.|.|.+.+..+             .......+.|...+..+  +... ..+....+..|+.++|.
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~--P~v~-~~~~~~~~~~g~~v~l~  161 (239)
T 3tv3_H           85 LVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKG--PSVF-PLAPSSKSTSGGTAALG  161 (239)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBC--CEEE-EECCCCCC--TTEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcC--CEEE-EECCChhhccCCcEEEE
Confidence            57899999999999999999875421             12233456665322111  1111 11122334579999999


Q ss_pred             EEeeCCCCCc-eeEEeECCEec
Q psy14540        128 CLVTKGDPPL-TISWLKNGLPI  148 (291)
Q Consensus       128 C~~~~~~p~~-~~~W~~~~~~~  148 (291)
                      |.+..++|.+ .+.|++++..+
T Consensus       162 C~~~~~~p~~~~v~W~~~g~~~  183 (239)
T 3tv3_H          162 CLVKDYFPEPVTVSWNSGALTS  183 (239)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCT
T ss_pred             EEEeeEeCCCeEEEEEECCccC
Confidence            9996556644 58999988643

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.77  E-value=4.2e-18  Score=120.83  Aligned_cols=117  Identities=18%  Similarity=0.209  Sum_probs=84.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCce-eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      +....+.+|+.++|.|.+ .+.|.+. +.|++++..+...                                        
T Consensus        14 p~~~~v~~G~~v~L~C~~-~~~p~~~~~~W~~~~~~~~~~----------------------------------------   52 (175)
T 1fnl_A           14 PQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISSQ----------------------------------------   52 (175)
T ss_dssp             SCCSEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEESS----------------------------------------
T ss_pred             CCceeeeCCCcEEEEeeC-CCCCCCcceEEEECCEEccCC----------------------------------------
Confidence            344578899999999998 5766665 8999998766321                                        


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLS  271 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~  271 (291)
                                ...|.|.++..+|+|.|+|.+.|..+  +..+.|.|..++.+...+...+.+|+.++|.|.+.++.|++.
T Consensus        53 ----------~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~  120 (175)
T 1fnl_A           53 ----------ASSYFIDAATVNDSGEYRCQTNLSTL--SDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHK  120 (175)
T ss_dssp             ----------CSEEEESSCCGGGCEEEEEECSSSCC--CCCEEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEE
T ss_pred             ----------ceEEEEeCCCcccCEEEEEEeeCCcc--cccEEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceE
Confidence                      23567777777788888888876433  556677777555444333344889999999999934445569


Q ss_pred             EEEEECCEEcc
Q psy14540        272 LQWYKNGLAIS  282 (291)
Q Consensus       272 v~W~~~~~~l~  282 (291)
                      +.|+|+|..+.
T Consensus       121 ~~W~k~g~~~~  131 (175)
T 1fnl_A          121 VTYLQNGKDRK  131 (175)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCeEcc
Confidence            99999999884

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.77  E-value=2.9e-18  Score=125.52  Aligned_cols=139  Identities=17%  Similarity=0.364  Sum_probs=98.1

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...   ... .         ........+.+            
T Consensus         7 ~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~---~~~-~---------~~~~~~~~~r~------------   60 (212)
T 1f97_A            7 AQSDVQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTAL---VCY-N---------SQITAPYADRV------------   60 (212)
T ss_dssp             SCSEEEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEE---EEE-T---------TEECGGGTTTE------------
T ss_pred             cCCCeEEEcCCCEEEEeEe-CCCCCcEEEEEECCCceeeE---Eec-C---------CcccccccCcE------------
Confidence            3455788899999999999 57799999999977542100   000 0         00000000000            


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL  268 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p  268 (291)
                           ..  ....|.|.++..+|+|.|+|.+.+..+  ..+..+.|.|..+|.+....... +.+|+.++|.|.+..+.|
T Consensus        61 -----~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p  133 (212)
T 1f97_A           61 -----TF--SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP  133 (212)
T ss_dssp             -----EE--ETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBS
T ss_pred             -----Ee--eceeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcC
Confidence                 01  126788999999999999999998865  45667788888888776654444 889999999999338999


Q ss_pred             CceEEEEECCE-EccC
Q psy14540        269 PLSLQWYKNGL-AISQ  283 (291)
Q Consensus       269 ~~~v~W~~~~~-~l~~  283 (291)
                      .+.+.|+++|. .+..
T Consensus       134 ~~~i~W~~~~~~~l~~  149 (212)
T 1f97_A          134 PSEYSWFKDGISMLTA  149 (212)
T ss_dssp             CCEEEEEETTEESBC-
T ss_pred             CCEEEEEeCCcccccc
Confidence            99999999999 7764

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.77  E-value=5.5e-18  Score=124.68  Aligned_cols=123  Identities=26%  Similarity=0.374  Sum_probs=87.0

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....                                      
T Consensus        23 ~~p~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~--------------------------------------   63 (218)
T 3k0w_A           23 VNPESKAVLAGQFVKLCCRA-TGHPFVQYQWFKMNKEIPNGN--------------------------------------   63 (218)
T ss_dssp             ECCCCEEEETTSBEEEECEE-TTTTSSEEEEEETTEECTTCC--------------------------------------
T ss_pred             ECCCCeEEeCCCcEEEEeee-cCCCCCEEEEEECCEECCCCC--------------------------------------
Confidence            34456788899999999999 788999999999998775321                                      


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecC---------------CCCCCCCccc-ccC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVP---------------PHIGPFTFGE-LME  253 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~---------------p~~~~~~~~~-~~~  253 (291)
                                 ...|.|.++...|+|.|+|.+.+..+. .+..+.|.|...               |.+...+... +.+
T Consensus        64 -----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~  132 (218)
T 3k0w_A           64 -----------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMP  132 (218)
T ss_dssp             -----------SSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECT
T ss_pred             -----------CCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecC
Confidence                       123555555556666666666655432 244455555543               2333333333 889


Q ss_pred             CceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        254 GVRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       254 g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      |+.++|.|.+ .+.|.+.+.|+++|..+...
T Consensus       133 G~~v~L~C~~-~g~p~~~v~W~~~~~~~~~~  162 (218)
T 3k0w_A          133 GSTLVLQCVA-VGSPIPHYQWFKNELPLTHE  162 (218)
T ss_dssp             TCCEEEECEE-EBSSCCEEEEEETTEECTTC
T ss_pred             CCcEEEEEEe-cccCCCeEEEEECCEECCCC
Confidence            9999999999 88999999999999998654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.77  E-value=3.9e-18  Score=136.59  Aligned_cols=134  Identities=20%  Similarity=0.394  Sum_probs=102.6

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeEC--CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN--GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ....+.+|+.+.|.|.+ .|.|.+.+.|+++  |..+......                    ..+.|.           
T Consensus         8 ~~~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~g~~~~~~~~~--------------------~~~~~~-----------   55 (389)
T 2jll_A            8 KNETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKS--------------------LDGRIE-----------   55 (389)
T ss_dssp             CCEEEETTSEEEEEEEE-ECSSCCEEEEEETTTTEEECC--CC--------------------SSSSEE-----------
T ss_pred             CceEEeCCCeEEEEEEe-ecccCCeEEEEeCCCCceeccCcCC--------------------CCCeEE-----------
Confidence            34567789999999999 6899999999999  7776432100                    001110           


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCCc
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPL  270 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~  270 (291)
                          +........|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|.+...+... +.+|+.+.|.|.+ .|.|.+
T Consensus        56 ----~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~  130 (389)
T 2jll_A           56 ----VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV-KSNPPA  130 (389)
T ss_dssp             ----EEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECE-EEESCC
T ss_pred             ----EeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEE-EecCCC
Confidence                0011124578888899999999999999988888888899999888887765553 7899999999999 888999


Q ss_pred             eEEEEECCEEccCC
Q psy14540        271 SLQWYKNGLAISQP  284 (291)
Q Consensus       271 ~v~W~~~~~~l~~~  284 (291)
                      .+.|+++|..|...
T Consensus       131 ~i~W~~~g~~l~~~  144 (389)
T 2jll_A          131 SIHWRRDKLVLPAK  144 (389)
T ss_dssp             EEEEEETTEESSCT
T ss_pred             eEEEEECCccCCcc
Confidence            99999999998654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.76  E-value=8.6e-18  Score=123.05  Aligned_cols=127  Identities=20%  Similarity=0.295  Sum_probs=85.9

Q ss_pred             eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      ....++.+.|.|.+....|.+.+.|++++..+....+..+...+.                                   
T Consensus        13 l~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~-----------------------------------   57 (212)
T 2r15_A           13 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE-----------------------------------   57 (212)
T ss_dssp             EEECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETT-----------------------------------
T ss_pred             EEEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCC-----------------------------------
Confidence            344778889999984335689999999999887655544332211                                   


Q ss_pred             EEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec--------------------CCCCC-CCCcc-cccCC
Q psy14540        197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV--------------------PPHIG-PFTFG-ELMEG  254 (291)
Q Consensus       197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~--------------------~p~~~-~~~~~-~~~~g  254 (291)
                           ...|.|.++..+|+|.|+|.+.|..+.....+.|.+..                    .|.+. ..+.. .+.+|
T Consensus        58 -----~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g  132 (212)
T 2r15_A           58 -----QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG  132 (212)
T ss_dssp             -----EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETT
T ss_pred             -----EEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccC
Confidence                 23466666666677777777776555544444444331                    22222 22222 28899


Q ss_pred             ceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540        255 VRTQVACVVQSGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       255 ~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~  284 (291)
                      +.+.|.|.+ .+.|.|.+.|+++|.++...
T Consensus       133 ~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~  161 (212)
T 2r15_A          133 KALNLTCNV-WGDPPPEVSWLKNEKALAQT  161 (212)
T ss_dssp             CCEEEEEEE-ECSSCCEEEEEETTEEECCC
T ss_pred             CeEEEEEEE-cCCCCceEEEEECCeECccC
Confidence            999999999 89999999999999998754

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.76  E-value=1.8e-17  Score=136.15  Aligned_cols=137  Identities=16%  Similarity=0.194  Sum_probs=84.9

Q ss_pred             cceeeeecCCcEEEEEEecCCCC---CeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          9 FIQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      |....+.+|+.+.|.|.+.+.++   +.+.| . +..+....... ......+  ...+.|.|.+++..|+|.|+|.+.+
T Consensus       254 p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~-~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n  330 (475)
T 1iga_A          254 PALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGP-PERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAY  330 (475)
T ss_pred             CChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccC-ceECCCCCEEEEEEEEEchHHhccCCcEEEEEEc
Confidence            33334689999999999987533   68999 4 43333111000 0000011  2446799999999999999999998


Q ss_pred             CCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCC
Q psy14540         84 RVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSD  151 (291)
Q Consensus        84 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  151 (291)
                      ..+.......+.+......|   ......+....+.+|+.+.|.|.+.+.+| .+.+.|+++|..+...
T Consensus       331 ~~~~~~~~~~v~~~~~~~~P---~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~  396 (475)
T 1iga_A          331 PESKTPLTATLSKSGNTFRP---EVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE  396 (475)
T ss_pred             CCCCCceEEEeecCCCCCCC---eEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCC
Confidence            87765443344321112122   11112222234668999999999954345 3599999999988654

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.76  E-value=5.2e-18  Score=127.01  Aligned_cols=183  Identities=22%  Similarity=0.338  Sum_probs=106.0

Q ss_pred             eeecceeeeecCCcEEEEEEecC--CCCCeeEEEECC--ee---c---C------------CCeeEeceEEeeccceEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YP---L---A------------GDRFVMGQYMSLHGDVISH   63 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~---~---~------------~~~~~~~~~~~~~~~~~~~   63 (291)
                      +..|....+.+|++++|.|.+.+  .+...+.|++..  ..   +   .            .+++..   ........++
T Consensus         3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~s   79 (248)
T 3u2s_H            3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSI---SRDNSKDTLY   79 (248)
T ss_dssp             EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEE---EEEGGGTEEE
T ss_pred             eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEE---EecCCCCEEE
Confidence            45677789999999999999975  234679999832  11   1   0            011111   1111234678


Q ss_pred             EEEeecCCCCCeEEEEEEeCCC----------------------CceeeeeeEEEEcC-CCCCcccceeccCCcceeecC
Q psy14540         64 VNISSVRVEDSGIYQCTATNRV----------------------GSQTHSADMRVYDA-PGQPQDVKLVTSNSRSIKVHS  120 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~~~~~----------------------~~~~~~~~l~v~~~-~~~~~~~~~~~~~~~~~~~~~  120 (291)
                      |+|.+++.+|+|.|.|.+.+..                      ......+.+.|... +..|   ..... .....+..
T Consensus        80 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P---~v~~~-~~~~~~~~  155 (248)
T 3u2s_H           80 LQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGP---SVFPL-APSSKSTS  155 (248)
T ss_dssp             EEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCC---EEEEE-CCC-----
T ss_pred             EEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCC---EEEEe-CCCccccC
Confidence            9999999999999999987531                      11223456666532 2122   11111 12223456


Q ss_pred             CCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540        121 GDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  199 (291)
Q Consensus       121 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~  199 (291)
                      |+.++|.|.+...+| ...+.|++++..+......                ......|.|.-                  
T Consensus       156 g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~----------------~~~~~~g~~~~------------------  201 (248)
T 3u2s_H          156 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP----------------AVLQSSGLYSL------------------  201 (248)
T ss_dssp             -CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC----------------CEECTTSCEEE------------------
T ss_pred             CCcEEEEEEEeeEECCCeEEEEeECCccCceeecC----------------ceECCCCCEEE------------------
Confidence            999999999965566 5689999988643211000                00122344432                  


Q ss_pred             ccceEEEEeeeecCCCeeEEEEeeeCCccCCce
Q psy14540        200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  232 (291)
Q Consensus       200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  232 (291)
                        .+.|.|.....++ |.|+|.|.|..+.....
T Consensus       202 --~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~  231 (248)
T 3u2s_H          202 --SSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  231 (248)
T ss_dssp             --EEEEEEEGGGBTT-BCCEEEEEEGGGTEEEE
T ss_pred             --EEEEEEChhhcCC-CeEEEEEEECCCCcceE
Confidence              2356677777777 88888888876544333

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.76  E-value=1.9e-17  Score=108.64  Aligned_cols=97  Identities=24%  Similarity=0.346  Sum_probs=82.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++..     ........|.|.+++.+|+|.|+|.
T Consensus         7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (114)
T 2cqv_A            7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKV-----ENSENGSKLTILAARQEHCGCYTLL   81 (114)
T ss_dssp             CCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEE-----EECSSEEEEEETTCCTTTCEEEEEE
T ss_pred             CCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEE-----EEcCCEEEEEECCCChhcCEEEEEE
Confidence            78999999999999999999999999999999999999988873 33332     1223356799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQP  103 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~  103 (291)
                      +.|..|.....+.|.|...|..|
T Consensus        82 a~N~~g~~~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           82 VENKLGSRQAQVNLTVVDKPDPP  104 (114)
T ss_dssp             EECSSCEEECCEEEEEECSCSCC
T ss_pred             EEECCCcEEEEEEEEEECCCCCC
Confidence            99999988889999999877655

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.76  E-value=1.5e-17  Score=123.35  Aligned_cols=188  Identities=21%  Similarity=0.325  Sum_probs=109.2

Q ss_pred             eecceeeeecCCcEEEEEEecC--CCCCeeEEEECC--ee---cC---------------CCeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YP---LA---------------GDRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~---~~---------------~~~~~~~~~~~~~~~~~~~l   64 (291)
                      ..|....+.+|++++|.|.+.+  .....+.|++..  ..   +.               .+++..   ........++|
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~sL   81 (230)
T 3n9g_H            5 VQSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTM---TRDTSTSTVYM   81 (230)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEE---EEETTTTEEEE
T ss_pred             EecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEE---EecCCCCEEEE
Confidence            3455688999999999999975  234679999732  11   10               011111   11123355789


Q ss_pred             EEeecCCCCCeEEEEEEeCCC-----C---ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-
Q psy14540         65 NISSVRVEDSGIYQCTATNRV-----G---SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-  135 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~~~~-----~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-  135 (291)
                      .|.+++.+|+|.|.|.+.+..     +   .....+.|.|...+..++  ... .......+.+|+.++|.|.+...+| 
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~v~-~~~~~~~~~~g~~v~L~C~~~~~~P~  158 (230)
T 3n9g_H           82 ELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGP--SVF-PLAPSSKSTSGGTAALGCLVKDYFPE  158 (230)
T ss_dssp             EECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCC--EEE-EECCCCCCCTTCEEEEEEEEEEEBSS
T ss_pred             EECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCC--EEE-ecCCCccccCCCCEEEEEEEEeEECC
Confidence            999999999999999998643     1   122345667753322111  111 1112223458999999999965566 


Q ss_pred             CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCC
Q psy14540        136 PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHS  215 (291)
Q Consensus       136 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~  215 (291)
                      .+.+.|  ++..+......              ........|.|.-                    .+.|.|.....+| 
T Consensus       159 ~~~v~W--~~~~~~~~~~~--------------~~~~~~~~g~~~~--------------------~s~L~i~~~~~~~-  201 (230)
T 3n9g_H          159 PVTVSW--NSGALTSGVHT--------------FPAVLQSSGLYSL--------------------SSVVTVPSSSLGT-  201 (230)
T ss_dssp             CCEEEE--GGGTBCTTEEE--------------CCCEECTTSCEEE--------------------EEEEEEESTTBTT-
T ss_pred             CEEEEE--CCcccCCCeEe--------------CCceECCCCCEEE--------------------EEEEEECHHHcCC-
Confidence            567999  55544321100              0000122344432                    2457777777777 


Q ss_pred             eeEEEEeeeCCccCCceeEEEE
Q psy14540        216 GNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       216 g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                      |.|+|.|.|..+.......+.|
T Consensus       202 ~~ytC~v~h~~~~~~~~~~~~v  223 (230)
T 3n9g_H          202 QTYICNVNHKPSNTKVDKRVEP  223 (230)
T ss_dssp             BCCEEEEEEGGGTEEEEEECCC
T ss_pred             CeEEEEEEECCCCcceEEEccC
Confidence            8888888887655444444443

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.76  E-value=2.5e-18  Score=127.62  Aligned_cols=184  Identities=14%  Similarity=0.237  Sum_probs=104.2

Q ss_pred             cceeecceee-eecCCcEEEEEEecCC---C-CCeeEEEECCeecCCCeeEeceE-EeeccceEEEEEEeecCCCCCeEE
Q psy14540          4 QLIYKFIQQT-LQPGPPVSLKCIATGN---P-TPHISWKLDGYPLAGDRFVMGQY-MSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         4 ~~~~~~~~~~-v~~g~~v~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      .++..|.... +..|+.++|.|.+.+.   | ...|+|+++|..+.......... ........+.|.|......|.|.|
T Consensus        25 v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~Y  104 (240)
T 4acp_A           25 VFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY  104 (240)
T ss_dssp             EEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCE
T ss_pred             EEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEE
Confidence            3344555555 6679999999999984   3 44799999999876432111100 001112336788888888889999


Q ss_pred             EEEEeCCCCceeeeeeEEE-EcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceE
Q psy14540         78 QCTATNRVGSQTHSADMRV-YDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEIT  155 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~  155 (291)
                      +|.+.+..+.......+.. ......|   ......+... ...|+.++|.|.+.+.+|.+ .+.|+++|..+.....  
T Consensus       105 tC~v~h~~~~~~~~~~i~~~~~~~~~P---~V~v~~~~~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~--  178 (240)
T 4acp_A          105 KCKVSNKALPAPIEKTISKAKGQPREP---QVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKA--  178 (240)
T ss_dssp             EEEEECC----CEEEEECCCCSCCBCC---EEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE--
T ss_pred             EEEEEcCCCCccccccccccCCCCCCC---EEEEECCChH-HhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCc--
Confidence            9999987653222222211 1111111   1111222211 22488999999996556764 8999999987632110  


Q ss_pred             EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                                   .....+..|.|.-                    .+.|.+.....+++|.|+|.|.+..
T Consensus       179 -------------~~~~~~~dgt~~~--------------------~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          179 -------------TPPVLDSDGSFFL--------------------YSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             -------------CCCEECTTSCEEE--------------------EEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             -------------cCceECCCCCEEE--------------------EEEEEEChHHhCCCCEEEEEEEECC
Confidence                         0011122344432                    2346666666667888888888765

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.76  E-value=2.4e-16  Score=110.76  Aligned_cols=129  Identities=18%  Similarity=0.219  Sum_probs=88.5

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      +.+.|....|.+|+++.|.|.+....+..+.|.-.   +....  .    ...+.....|.|.+++. | |.|.|.+...
T Consensus         2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~---l~~~~--~----~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~   70 (185)
T 1iam_A            2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETP---LPKKE--L----LLPGNNRKVYELSNVQE-D-SQPMCYSNCP   70 (185)
T ss_dssp             EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECS---SCEEE--E----CSSSSSEEEEEEEEECS-C-BCCEEEEECS
T ss_pred             eEEECCCcEEeCCCCEEEEEEccCCCCccceEEee---CCCcc--E----eccCCceeEEEEEecCc-C-CEEEEEEECC
Confidence            45678888899999999999997433333777531   11000  0    01122335578999984 4 9999999765


Q ss_pred             CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc--eeEEeECCEeccC
Q psy14540         85 VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL--TISWLKNGLPILS  150 (291)
Q Consensus        85 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~  150 (291)
                      .....+.+.+.|+..|..+      ...+....+.+|+.++|.|.+.++.|..  .|+||+++..+..
T Consensus        71 ~~~~~~~~~l~V~~~P~~v------~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~  132 (185)
T 1iam_A           71 DGQSTAKTFLTVYWTPERV------ELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKR  132 (185)
T ss_dssp             SCEEEEECEEEEEBCCSEE------EECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred             CCceEEEEEEEEeCCCCCC------EEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccc
Confidence            5567888899999876321      1122223478999999999997778875  5899999988743

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.76  E-value=1.4e-17  Score=120.83  Aligned_cols=122  Identities=20%  Similarity=0.281  Sum_probs=88.4

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECC-EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNG-LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      ..+.+|+.++|.|.+ .|.|.+.+.|++.. .++.  ....                                       
T Consensus        11 ~~~~~G~~v~L~C~~-~g~P~p~i~W~~~~~~~~~--~~~~---------------------------------------   48 (202)
T 1vca_A           11 YLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPLN--GKVT---------------------------------------   48 (202)
T ss_dssp             EEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCCS--SEEE---------------------------------------
T ss_pred             EEEcCCCcEEEEEee-cCCCCCeEEEECCCCCCcc--ceEE---------------------------------------
Confidence            455699999999999 68899999998842 1110  0000                                       


Q ss_pred             EEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCC-CcccccCCceEEEEEEeecCCCC--ce
Q psy14540        195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPF-TFGELMEGVRTQVACVVQSGDLP--LS  271 (291)
Q Consensus       195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~g~~v~l~C~~~~~~p~--~~  271 (291)
                         .......|.|.++..+|+|.|.|.|.|..+..+..+.|.|..+|..... +...+.+|+.++|+|.+.++.|.  ++
T Consensus        49 ---~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~  125 (202)
T 1vca_A           49 ---NEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLE  125 (202)
T ss_dssp             ---EETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEE
T ss_pred             ---EcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeE
Confidence               0011345788888888999999999988877777888999877654332 22338999999999999544554  48


Q ss_pred             EEEEECCEEcc
Q psy14540        272 LQWYKNGLAIS  282 (291)
Q Consensus       272 v~W~~~~~~l~  282 (291)
                      |.|+|||..|.
T Consensus       126 i~W~k~~~~l~  136 (202)
T 1vca_A          126 IDLLKGDHLMK  136 (202)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEeCCeECc
Confidence            99999999874

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.75  E-value=3e-17  Score=115.88  Aligned_cols=117  Identities=21%  Similarity=0.279  Sum_probs=86.5

Q ss_pred             CcceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      +....+.+|+.+.|.|.+ .+.| .+.+.|++++..+....                                       
T Consensus        11 p~~~~v~~G~~v~l~C~~-~~~p~~~~~~W~~~g~~~~~~~---------------------------------------   50 (170)
T 3ry4_A           11 PPWINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPTHT---------------------------------------   50 (170)
T ss_dssp             SCCSEEETTCEEEEEEES-CCCSSSSCEEEEETTEECTTCC---------------------------------------
T ss_pred             CCCeEEECCCcEEEEEEe-cCCCCcceEEEEECCeEcccCc---------------------------------------
Confidence            344568899999999999 4555 67999999998875431                                       


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLS  271 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~  271 (291)
                                 ..+.+.++..+|+|.|+|.+.+..  .+..+.|.|..+|.+...+...+.+|+.+.|.|.+..+.|.+.
T Consensus        51 -----------~~~~~~~~~~~d~G~Y~C~~~~~~--~s~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  117 (170)
T 3ry4_A           51 -----------QPSYRFKANNNDSGEYTCQTGQTS--LSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVK  117 (170)
T ss_dssp             -----------SSEEEEECCGGGCEEEEEEETTSB--CCCCEEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEE
T ss_pred             -----------cceEEEecccccCeEEEEEEeCCC--ceEeEEEEEECCceEecCCCceeecCCeEEEEEECCCCCCCce
Confidence                       123344566777888888887643  3445677777766555444445889999999999966777799


Q ss_pred             EEEEECCEEcc
Q psy14540        272 LQWYKNGLAIS  282 (291)
Q Consensus       272 v~W~~~~~~l~  282 (291)
                      +.|+++|..+.
T Consensus       118 ~~W~~~g~~~~  128 (170)
T 3ry4_A          118 VTFFQNGKSQK  128 (170)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCeEcc
Confidence            99999999874

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.75  E-value=5.1e-18  Score=120.54  Aligned_cols=117  Identities=20%  Similarity=0.237  Sum_probs=85.2

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      +....+.+|+.++|.|.+ .+.+.+ .+.|++++..+...                                        
T Consensus        11 p~~~~v~~G~~v~L~C~~-~~~~~~~~i~W~~~~~~~~~~----------------------------------------   49 (176)
T 1f2q_A           11 PPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEET----------------------------------------   49 (176)
T ss_dssp             SSCSEEETTCCEEEECCT-TCC----CCEEEETTEECSCC----------------------------------------
T ss_pred             CCCcceecCCcEEEEEeC-CCCCCcceEEEEECCeECCCC----------------------------------------
Confidence            344678899999999998 566654 79999999876421                                        


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLS  271 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~  271 (291)
                                ...|.|.++..+|+|.|+|.+.|..+  +..+.|.|..++.+...+...+.+|+.++|.|.+..+.|.+.
T Consensus        50 ----------~~~L~i~~v~~~d~G~Y~C~~~~~~~--s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~  117 (176)
T 1f2q_A           50 ----------NSSLNIVNAKFEDSGEYKCQHQQVNE--SEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYK  117 (176)
T ss_dssp             ----------SSEEEECSCCGGGCEEEEEECTTSSC--CCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEE
T ss_pred             ----------ceEEEEeccceecCEEEEEEcCCccc--cccEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCceE
Confidence                      23567777777788888888876543  445666666554443334444889999999999966778889


Q ss_pred             EEEEECCEEcc
Q psy14540        272 LQWYKNGLAIS  282 (291)
Q Consensus       272 v~W~~~~~~l~  282 (291)
                      +.|++||..+.
T Consensus       118 ~~W~~~g~~~~  128 (176)
T 1f2q_A          118 VIYYKDGEALK  128 (176)
T ss_dssp             EEEEETTEECC
T ss_pred             EEEEECCEEEe
Confidence            99999999884

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.75  E-value=8.8e-18  Score=121.46  Aligned_cols=121  Identities=15%  Similarity=0.221  Sum_probs=75.5

Q ss_pred             eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      .+.+|+.++|.|.+ .+.|. .+.|++++..+.....  .....                                    
T Consensus        15 ~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~--~~~~~------------------------------------   54 (196)
T 2d3v_A           15 VISRGNSVTIRCQG-TLEAQ-EYRLVKEGSPEPWDTQ--NPLEP------------------------------------   54 (196)
T ss_dssp             EEETTCCEEEEEEC-CTTCC-EEEEEETTCSSCSEEE--CCCSS------------------------------------
T ss_pred             cccCCCeEEEEEeC-CCCCc-EEEEEECCCCCCcccc--cccCC------------------------------------
Confidence            67899999999998 56665 9999999976632100  00000                                    


Q ss_pred             EEeccceEEEEeeeecCCCeeEEEEeeeCCcc--CCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540        197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVAS--DNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLS  271 (291)
Q Consensus       197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~--~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~  271 (291)
                         .....|.|.++..+|+|.|+|.+.|..+.  .+..+.|.|..   +|.+...+...+.+|+.++|.|.+ .+.| +.
T Consensus        55 ---~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~~~p-~~  129 (196)
T 2d3v_A           55 ---KNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS-RLRF-DR  129 (196)
T ss_dssp             ---TTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEE-SSCC-SE
T ss_pred             ---ccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEc-CCCC-CE
Confidence               11345777777778888888888776642  35567777765   455544443348999999999999 7777 89


Q ss_pred             EEEEECCEEcc
Q psy14540        272 LQWYKNGLAIS  282 (291)
Q Consensus       272 v~W~~~~~~l~  282 (291)
                      +.|+|+|..+.
T Consensus       130 ~~W~k~g~~~~  140 (196)
T 2d3v_A          130 FILTEEGDHKL  140 (196)
T ss_dssp             EEEEEC---CC
T ss_pred             EEEEccCCccc
Confidence            99999998774

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.75  E-value=5.6e-18  Score=123.70  Aligned_cols=140  Identities=16%  Similarity=0.352  Sum_probs=98.6

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....     ..   .     .+.....+             
T Consensus         9 ~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~-----~~---~-----~~~~~~~~-------------   61 (209)
T 1nbq_A            9 SSEPEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVC-----YN---N-----KITASYED-------------   61 (209)
T ss_dssp             CSCSBCCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESE-----ET---T-----EECTTTTT-------------
T ss_pred             cCCCceEEEcCCCEEEEEEE-eCCCCcEEEEEEcCCceeEEEE-----ec---C-----ccCccccC-------------
Confidence            34455778899999999999 5778999999997754211000     00   0     00000000             


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGD  267 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~  267 (291)
                        ...  .  ....|.|.++..+|+|.|+|.+.+..+  ..+..+.|.|..+|.+....... +.+|+.++|.|.+..+.
T Consensus        62 --r~~--~--~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~  135 (209)
T 1nbq_A           62 --RVT--F--LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGS  135 (209)
T ss_dssp             --TCE--E--ETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCB
T ss_pred             --ceE--e--eccEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCC
Confidence              000  0  126788899999999999999998754  45567788888888776655544 89999999999965789


Q ss_pred             CCceEEEEECCEEccC
Q psy14540        268 LPLSLQWYKNGLAISQ  283 (291)
Q Consensus       268 p~~~v~W~~~~~~l~~  283 (291)
                      |.+.+.|+++|..+..
T Consensus       136 p~~~v~W~~~~~~~~~  151 (209)
T 1nbq_A          136 PPSEYTWFKDGIVMPT  151 (209)
T ss_dssp             SCCEEEEEETTCCCCS
T ss_pred             CCceeEEEECCeeCCC
Confidence            9999999999998865

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.75  E-value=3.7e-18  Score=122.70  Aligned_cols=128  Identities=23%  Similarity=0.408  Sum_probs=87.6

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....  +....                                
T Consensus         8 ~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~--------------------------------   54 (189)
T 2v5t_A            8 VVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAML--------------------------------   54 (189)
T ss_dssp             CCSSEEEETTSCEEECCEE-ECSSCCEEEEEC-----CBCCCTTEEEC--------------------------------
T ss_pred             cCCCEEEeCCCcEEEEEEE-cCCCCCEEEEEECCccceeccCCeEEEe--------------------------------
Confidence            3445788899999999999 578889999999987764321  11111                                


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc--CCceeEEEEecCCCCCCCCcc---cccCCceEEEEEEee
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS--DNHSSNLRVNVPPHIGPFTFG---ELMEGVRTQVACVVQ  264 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~--~~~~~~l~v~~~p~~~~~~~~---~~~~g~~v~l~C~~~  264 (291)
                                 ....|.|.++..+|+|.|+|.+.+..+.  ....+.+.+..+|.+......   .+.+|+.++|.|.+ 
T Consensus        55 -----------~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~-  122 (189)
T 2v5t_A           55 -----------ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-  122 (189)
T ss_dssp             -----------TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEE-
T ss_pred             -----------cCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEE-
Confidence                       1234667777777777777777776532  224455666666655544332   28899999999999 


Q ss_pred             cCCCCceEEEEECCEEccCC
Q psy14540        265 SGDLPLSLQWYKNGLAISQP  284 (291)
Q Consensus       265 ~~~p~~~v~W~~~~~~l~~~  284 (291)
                      .+.|.+.+.|+++|..+...
T Consensus       123 ~g~p~~~v~W~~~g~~~~~~  142 (189)
T 2v5t_A          123 SGSPEPAISWFRNGKLIEEN  142 (189)
T ss_dssp             EEESCCEEEEEETTEECCCS
T ss_pred             ccCCCCeEEEEECCEECcCC
Confidence            78899999999999998654

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.74  E-value=2.4e-17  Score=130.99  Aligned_cols=140  Identities=16%  Similarity=0.249  Sum_probs=84.6

Q ss_pred             eeecceee-eecCCcEEEEEEecCC---CC-CeeEEEECCeecCCCee-EeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          6 IYKFIQQT-LQPGPPVSLKCIATGN---PT-PHISWKLDGYPLAGDRF-VMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         6 ~~~~~~~~-v~~g~~v~l~C~~~~~---~~-~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +..|.... +..|++++|.|.+.+.   |. ..|.|++++..+..... .............+.|.|.+++.+|.|.|+|
T Consensus       171 ~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C  250 (376)
T 2aty_A          171 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKC  250 (376)
T ss_pred             EeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEE
Confidence            33444344 7899999999999875   32 36999998865531110 0000001111234679999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEE-cCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeECCEecc
Q psy14540         80 TATNRVGSQTHSADMRVY-DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPIL  149 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~  149 (291)
                      .+.+..+.......+.+. .....|   ..... +.......|+.++|.|.+.+.+| .+.|+|+++|..+.
T Consensus       251 ~~~~~~~~~~~~~~v~~~~~~~~~P---~v~v~-~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~  318 (376)
T 2aty_A          251 RVNSAAFPAPIEKTISKTKGRPKAP---QLYTI-PPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE  318 (376)
T ss_pred             EEecCCCCCceEEEEcCCCCCCcCC---eEEee-CCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECC
Confidence            998776543222222211 111111   11111 12222345889999999954455 56999999998874

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.74  E-value=5.2e-17  Score=125.70  Aligned_cols=156  Identities=21%  Similarity=0.332  Sum_probs=110.3

Q ss_pred             ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEee-cCCCCCeEEEEEEeCCCCc
Q psy14540         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISS-VRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~   87 (291)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ..++..     ........|.|.+ ++..|+|.|+|.+.|..|.
T Consensus       112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~  186 (305)
T 2nzi_A          112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV-----IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI  186 (305)
T ss_dssp             CCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEE-----EECSSEEEEEETTCCCSTTCEEEEEEEEETTEE
T ss_pred             ccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEE-----EEcCCceEEEEecCCccCccEEEEEEEEeCCCc
Confidence            45678899999999999998899999999998776 333222     1122346789999 9999999999999999999


Q ss_pred             eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee-------------CCCCCceeEEeECCEeccCCCce
Q psy14540         88 QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT-------------KGDPPLTISWLKNGLPILSDAEI  154 (291)
Q Consensus        88 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-------------~~~p~~~~~W~~~~~~~~~~~~~  154 (291)
                      ....+.+.|...|..|.....        ....+..+.|.|...             ...+.+...|.+.+...      
T Consensus       187 ~~~~~~l~v~~~P~~p~~~~~--------~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~------  252 (305)
T 2nzi_A          187 DQKTVELDVADVPDPPRGVKV--------SDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR------  252 (305)
T ss_dssp             EEEEEEEEEEBCCCCCEEEEE--------ESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEES------
T ss_pred             eeeEEEEEEecCCCCCCCcee--------eeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECcccc------
Confidence            888999999887755532211        112345556666531             12222333444332211      


Q ss_pred             EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       155 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                              ...+.|..+...+.|.|+|.|.|..|....
T Consensus       253 --------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~  282 (305)
T 2nzi_A          253 --------ETRYTVINLFGKTSYQFRVIAENKFGLSKP  282 (305)
T ss_dssp             --------SSEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred             --------CceEEecCCCCCCeEEEEEEEEeCCcccCC
Confidence                    346889999999999999999999886543

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.74  E-value=7.6e-17  Score=117.35  Aligned_cols=135  Identities=23%  Similarity=0.283  Sum_probs=84.1

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecCC------CeeEeceEEee---ccceEEEEEEeecCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAG------DRFVMGQYMSL---HGDVISHVNISSVRVE   72 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~------~~~~~~~~~~~---~~~~~~~l~i~~~~~~   72 (291)
                      .+...|..+.+.+|++++|.|.+.+.. ..+.|+|..  ..+..      ......+....   .....++|.|.+++.+
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~   81 (207)
T 1ypz_E            3 QVEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLE   81 (207)
T ss_dssp             SEEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGG
T ss_pred             ccEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHH
Confidence            356667888999999999999998643 479999843  21110      00011111111   1245578999999999


Q ss_pred             CCeEEEEEEeCCCC---------c--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeE
Q psy14540         73 DSGIYQCTATNRVG---------S--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTIS  140 (291)
Q Consensus        73 d~G~y~C~~~~~~~---------~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~  140 (291)
                      |+|.|.|.+.+..+         .  ....+.|.|......+.       .+ .+.+..+ .++|.|.+...+|. +.+.
T Consensus        82 D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~-------~P-~v~~~~~-~~~l~C~~~g~~P~~~~v~  152 (207)
T 1ypz_E           82 DSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPA-------KP-SVFIMKN-GTNVACLVKDFYPKEVTIS  152 (207)
T ss_dssp             GCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCC-------CC-EEEEEEE-TTEEEEEEEEESSSCCEEE
T ss_pred             HCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCC-------CC-eEEEeCC-CCeEEEEEeeEeCCCeEEE
Confidence            99999999986531         1  12345777775321110       11 1112122 37999999655665 7999


Q ss_pred             EeECCEecc
Q psy14540        141 WLKNGLPIL  149 (291)
Q Consensus       141 W~~~~~~~~  149 (291)
                      |+++ ..+.
T Consensus       153 W~~~-~~l~  160 (207)
T 1ypz_E          153 LRSS-KKIV  160 (207)
T ss_dssp             EECS-SEEE
T ss_pred             EecC-Cccc
Confidence            9998 6554

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.73  E-value=1.6e-18  Score=136.53  Aligned_cols=141  Identities=18%  Similarity=0.331  Sum_probs=83.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCC-CC-CeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.+...+....+.+|+.++|.|.+.+. |. +.+.|++++..+.....  .......+  ...+.|.|.+++.+| |.|
T Consensus       120 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~--~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y  196 (344)
T 1za6_B          120 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF--PAVLQSSGLYSLSSVVTVPSSSLGT-QTY  196 (344)
T ss_dssp             CCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEEC--CCEECTTSCEEEEEEEEEETTHHHH-BCE
T ss_pred             CCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeEC--CCeECCCCCEEEEEEEEEcHHHcCC-CcE
Confidence            3555544434456799999999999874 54 79999999876431100  00000011  123578999988888 999


Q ss_pred             EEEEeCCCCceeeeeeEE--E-------------------EcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-
Q psy14540         78 QCTATNRVGSQTHSADMR--V-------------------YDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-  135 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~--v-------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-  135 (291)
                      +|.+.+..+.......+.  +                   ......|   ......+... ..+|..++|.|.+.+.+| 
T Consensus       197 ~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P---~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~  272 (344)
T 1za6_B          197 ICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREP---QVYTLPPSRD-ELTKNQVSLTCLVKGFYPS  272 (344)
T ss_dssp             EEEEEEGGGTEEEEEEECCCCC--------------------CCBCC---EEEEECCCGG-GGGSSSEEEEEEEEEEBSS
T ss_pred             EEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCC---EEEEeCCChH-hccCCcEEEEEEEeeEECC
Confidence            999998766533222221  1                   0011111   1111111112 224667999999953355 


Q ss_pred             CceeEEeECCEecc
Q psy14540        136 PLTISWLKNGLPIL  149 (291)
Q Consensus       136 ~~~~~W~~~~~~~~  149 (291)
                      .+.+.|+++|..+.
T Consensus       273 ~~~v~W~k~g~~~~  286 (344)
T 1za6_B          273 DIAVEWESNGQPEN  286 (344)
T ss_dssp             CCEEEEESSSSCCC
T ss_pred             CeEEEEEECCeECC
Confidence            46899999998774

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.73  E-value=5.6e-17  Score=118.81  Aligned_cols=142  Identities=14%  Similarity=0.301  Sum_probs=94.3

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      .+.+.+|+.++|.|.+ .+.|.+.+.|++....-  ...........         ......+.|               
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~--~~~~~~~~~~~---------~~~~~~~r~---------------   61 (213)
T 3mj8_L            9 LVSVALGQKATITCSG-DKLSDVYVHWYQQKAGQ--APVLVIYEDNR---------RPSGIPDHF---------------   61 (213)
T ss_dssp             EEEEETTSCEEEEEEC-SSTTTSCEEEEEECTTS--CCEEEEBTTTB---------CCTTSCTTE---------------
T ss_pred             cEEEeCCCCEEEEEEc-CCCCCceEEEEEECCCC--CcEEEEEECCc---------cCCCccCcE---------------
Confidence            5788899999999999 58889999999832100  00000000000         000011112               


Q ss_pred             EEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEEeecC
Q psy14540        195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACVVQSG  266 (291)
Q Consensus       195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~~~~~  266 (291)
                      .+........|.|.++..+|+|.|.|.+.+..+   .......|.|.    .+|.+...+... +.+|+.++|.|.+.+.
T Consensus        62 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~  141 (213)
T 3mj8_L           62 SGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGF  141 (213)
T ss_dssp             EEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE
T ss_pred             EEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeece
Confidence            222233466899999999999999999998876   45666778887    566665544333 5589999999999444


Q ss_pred             CCC-ceEEEEECCEEccC
Q psy14540        267 DLP-LSLQWYKNGLAISQ  283 (291)
Q Consensus       267 ~p~-~~v~W~~~~~~l~~  283 (291)
                      .|+ +.|.|++||.++..
T Consensus       142 ~p~~~~v~W~k~g~~l~~  159 (213)
T 3mj8_L          142 YPADVAVTWEADGTPITQ  159 (213)
T ss_dssp             BSSCCEEEEEETTEEECT
T ss_pred             eCCCeEEEEEcCCcccCC
Confidence            454 49999999999865

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.73  E-value=2.6e-17  Score=120.94  Aligned_cols=135  Identities=21%  Similarity=0.403  Sum_probs=93.3

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.......        ..+.+     .+...            
T Consensus        14 ~~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~--------~~~~~-----~~~~~------------   67 (217)
T 2vr9_A           14 EHPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKS--------HRVQF-----KDGAL------------   67 (217)
T ss_dssp             ECCCCEEECTTSCEEECCEE-ECSSCCEEEEEETTEECCCSSSSS--------SEEEC-----TTSCE------------
T ss_pred             cCCCceEEeCCCcEEEEEEc-CCCCCCeEEEEECCcCccCCCccc--------eeEEe-----cCCce------------
Confidence            34456788999999999999 688889999999998876542110        00000     00000            


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEec-CCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNV-PPHIGPFTFGE-LMEGVRTQVACVVQSGD  267 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~-~p~~~~~~~~~-~~~g~~v~l~C~~~~~~  267 (291)
                                 ...+.|.++..+|+|.|+|.+.|..+.. +....|.|.. +|.+...+... +.+|+.++|.|.+..+.
T Consensus        68 -----------~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~  136 (217)
T 2vr9_A           68 -----------FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGI  136 (217)
T ss_dssp             -----------EESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEE
T ss_pred             -----------EEEEEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCC
Confidence                       0123456677788888888888877543 4455666654 45554444444 89999999999986788


Q ss_pred             CCceEEEEECCEEcc
Q psy14540        268 LPLSLQWYKNGLAIS  282 (291)
Q Consensus       268 p~~~v~W~~~~~~l~  282 (291)
                      |.+.+.|+++|..+.
T Consensus       137 p~~~v~W~~~g~~~~  151 (217)
T 2vr9_A          137 PEPTLIWIKDGVPLD  151 (217)
T ss_dssp             SCCEEEEEETTEEEC
T ss_pred             CCCeEEEEECCcCCC
Confidence            999999999999887

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.73  E-value=9.7e-17  Score=120.91  Aligned_cols=185  Identities=23%  Similarity=0.360  Sum_probs=103.8

Q ss_pred             ecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~l~   65 (291)
                      .+....+.+|++++|.|.+.+.  ....+.|++..  ....                  .+++..   ........++|+
T Consensus        29 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~sL~  105 (256)
T 3sob_H           29 ESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTI---SADTSKNTAYLQ  105 (256)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEE---EEEGGGTEEEEE
T ss_pred             ecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEE---EEeCCCCEEEEE
Confidence            3455779999999999999752  24679999732  1110                  011111   111233557899


Q ss_pred             EeecCCCCCeEEEEEEeCCCC-----------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCC
Q psy14540         66 ISSVRVEDSGIYQCTATNRVG-----------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD  134 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~~~-----------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~  134 (291)
                      |.+++.+|+|.|.|.+.+..+           .....+.+.|...+..+  +..... .....+.+|+.++|.|.+...+
T Consensus       106 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~--P~i~~~-~~~~~~~~g~~v~L~C~~~~~~  182 (256)
T 3sob_H          106 MNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKG--PSVFPL-APSSKSTSGGTAALGCLVKDYF  182 (256)
T ss_dssp             ECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBC--CEEEEE-CCC-----TTEEEEEEEEEEEB
T ss_pred             ECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCC--CEEEEE-CCCcccccCCcEEEEEEEEEEE
Confidence            999999999999999985431           12334466665432111  111111 1122456899999999996556


Q ss_pred             C-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecC
Q psy14540        135 P-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTG  213 (291)
Q Consensus       135 p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  213 (291)
                      | .+.+.|  ++..+......              .....+..|.|.-                    .+.|.|.....+
T Consensus       183 p~~~~v~W--~~~~~~~~~~~--------------~~~~~~~~g~~~~--------------------~s~L~i~~~~~~  226 (256)
T 3sob_H          183 PEPVTVSW--NSGALTSGVHT--------------FPAVLQSSGLYSL--------------------SSVVTVPSSSLG  226 (256)
T ss_dssp             SSCCEEEE--GGGTBCTTEEE--------------CCCEECTTSCEEE--------------------EEEEEEEGGGTT
T ss_pred             CCCeEEEE--CCcccCCCeEe--------------CCceeCCCCCEEE--------------------EEEEEECHHHcC
Confidence            6 567999  55444221100              0000122244432                    245677777777


Q ss_pred             CCeeEEEEeeeCCccCCceeEE
Q psy14540        214 HSGNYTCVASNTVASDNHSSNL  235 (291)
Q Consensus       214 ~~g~y~C~~~~~~~~~~~~~~l  235 (291)
                      | |.|+|.+.|..+.......+
T Consensus       227 d-~~ytC~v~~~~~~~~~~~~~  247 (256)
T 3sob_H          227 T-QTYICNVNHKPSNTKVDKKV  247 (256)
T ss_dssp             T-CCCEEEEEEGGGTEEEEEEC
T ss_pred             C-ceEEEEEEeCCCCcceEEEe
Confidence            7 88888887776544333333

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.73  E-value=5e-17  Score=120.12  Aligned_cols=132  Identities=22%  Similarity=0.305  Sum_probs=80.1

Q ss_pred             ecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC------C------------CeeEeceEEeeccceEEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA------G------------DRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~------~------------~~~~~~~~~~~~~~~~~~l~   65 (291)
                      .|..+.+.+|++++|.|.+.+.  +...+.|++..  ....      .            +++..   ........++|+
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~sL~   82 (226)
T 3mlr_H            6 ESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTM---SVDKSISTAYLQ   82 (226)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEE---EEEGGGTEEEEE
T ss_pred             cCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEE---EecCCCCEEEEE
Confidence            4456889999999999999652  34679999832  1110      0            11111   111223457899


Q ss_pred             EeecCCCCCeEEEEEEeCCCC---------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-
Q psy14540         66 ISSVRVEDSGIYQCTATNRVG---------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-  135 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~~~---------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-  135 (291)
                      |.+++.+|+|.|.|.+.+..+         .....+.|.|...+..++ ...  .......+.+|+.++|.|.+...+| 
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P-~i~--~~~~~~~~~~g~~~~l~C~~~~~~p~  159 (226)
T 3mlr_H           83 WTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGP-SVF--PLAPSSKSTSGGTAALGCLVKDYFPE  159 (226)
T ss_dssp             ESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCC-EEE--EEEEEECSTTSSEEEEEEEEEEEBSS
T ss_pred             ECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCC-cEE--EecCcccccCCCCEEEEEEEEEEECC
Confidence            999999999999999875320         112334566654322111 111  1111223458999999999966566 


Q ss_pred             CceeEEeECCEe
Q psy14540        136 PLTISWLKNGLP  147 (291)
Q Consensus       136 ~~~~~W~~~~~~  147 (291)
                      .+.+.|  ++..
T Consensus       160 ~~~v~W--~~~~  169 (226)
T 3mlr_H          160 PVTVSW--NSGA  169 (226)
T ss_dssp             CCEEEE--GGGT
T ss_pred             CeEEEE--CCcc
Confidence            568999  4443

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.73  E-value=2.9e-17  Score=119.31  Aligned_cols=130  Identities=15%  Similarity=0.165  Sum_probs=87.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCC-----ceeEEeE-CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPP-----LTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~-----~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      +..+.+.+|+.+.|.|.+ .+.|.     +.+.|++ ++.......+..+.....                         
T Consensus         9 ~~~v~v~~G~~v~L~C~~-~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~-------------------------   62 (202)
T 3bp6_B            9 KEVYTVDVGSSVSLECDF-DRRECTELEGIRASLQKVENDTSLQSERATLLEEQL-------------------------   62 (202)
T ss_dssp             CSEEEEETTSCEEEEEEE-CTTC---CTTEEEEEEECC--CCCBCSSCEECGGGG-------------------------
T ss_pred             CcCEEEeCCCcEEEEEEe-cCCCCCCccceEEEEEcCCCcccccCCceEEeeccc-------------------------
Confidence            345778899999999999 67765     8999999 443332222222211100                         


Q ss_pred             CCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecC
Q psy14540        187 VASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSG  266 (291)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~  266 (291)
                                  ......|.|.++..+|+|.|+|.+.+..+.....+.|.|..++.........+.+|+.+.|.|.+ .|
T Consensus        63 ------------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~-~g  129 (202)
T 3bp6_B           63 ------------PLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQA-RG  129 (202)
T ss_dssp             ------------GGTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEE-EE
T ss_pred             ------------cCCeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEc-cc
Confidence                        00134677777788888888888888776667777788876543211111126789999999999 88


Q ss_pred             CCCceEEEEECCEEc
Q psy14540        267 DLPLSLQWYKNGLAI  281 (291)
Q Consensus       267 ~p~~~v~W~~~~~~l  281 (291)
                      .|.|.+.|++++..+
T Consensus       130 ~P~p~v~W~~~~~~~  144 (202)
T 3bp6_B          130 YPLAEVSWQNVSVPA  144 (202)
T ss_dssp             BSCCEEEETTCCSCC
T ss_pred             cCCceEEEEeCCCCc
Confidence            999999999998765

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.72  E-value=9.9e-17  Score=115.21  Aligned_cols=122  Identities=19%  Similarity=0.265  Sum_probs=90.5

Q ss_pred             eeecCCCceEEEEEeeCCCCCc--eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPL--TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      +.+..|++++|.|.+  +.|.+  .|.|++.+..+   .+..                                      
T Consensus        17 v~v~~G~sv~L~C~a--~~p~P~~~i~W~~~~~~l---~~~~--------------------------------------   53 (210)
T 1gsm_A           17 VAVALGASRQLTCRL--ACADRGASVQWRGLDTSL---GAVQ--------------------------------------   53 (210)
T ss_dssp             EEEETTCCEEEEEEE--CCSSTTCEEEEESSTTTT---CCEE--------------------------------------
T ss_pred             eEEeCCCCEEEEEEC--CCCCCCcceEEeeccccc---CcEE--------------------------------------
Confidence            678899999999998  56666  99999854332   1110                                      


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCC----
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP----  269 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~----  269 (291)
                          .......|.|.+++.+|+|.|.|.+.+..+.....+.|.|..+|.........+..|+.+ |+|.+.+.+|.    
T Consensus        54 ----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~  128 (210)
T 1gsm_A           54 ----SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNA  128 (210)
T ss_dssp             ----EESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTT
T ss_pred             ----ecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCC
Confidence                011245688888888889999999998887777889999999886544333356678888 99999555674    


Q ss_pred             ceEEEEECCEEccCCe
Q psy14540        270 LSLQWYKNGLAISQPD  285 (291)
Q Consensus       270 ~~v~W~~~~~~l~~~~  285 (291)
                      ++|.|+|||++|...+
T Consensus       129 lti~Wlk~~~~L~~~~  144 (210)
T 1gsm_A          129 LSFSLLVGGQELEGAQ  144 (210)
T ss_dssp             EEEEEEETTEECTTCE
T ss_pred             cEEEEEECCEEccccc
Confidence            5999999999996543

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.71  E-value=1.5e-16  Score=104.49  Aligned_cols=97  Identities=27%  Similarity=0.428  Sum_probs=81.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +|.|+..|....+.+|+.++|.|.+.+.|.+.+.|++++..+..  .++..    ...+...++|.|.+++.+|+|.|+|
T Consensus        15 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~----~~~~~~~~~L~I~~v~~~D~G~Y~C   90 (116)
T 2kkq_A           15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISL----YQDNTGRVTLLIKDVNKKDAGWYTV   90 (116)
T ss_dssp             CCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEE----EECTTCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEE----EeCCCCeEEEEECCCCcccCEEEEE
Confidence            78999999999999999999999999988899999999988763  22222    1223345689999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEcCCCC
Q psy14540         80 TATNRVGSQTHSADMRVYDAPGQ  102 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~  102 (291)
                      .+.|..|.....+.|.|...|..
T Consensus        91 ~a~N~~G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           91 SAVNEAGVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             EEEETTEEEEEEEEEEEECCSCC
T ss_pred             EEEcCCCeEEEEEEEEEeCCCCC
Confidence            99999998888899999877643

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.71  E-value=3e-16  Score=102.84  Aligned_cols=101  Identities=18%  Similarity=0.234  Sum_probs=76.4

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCC---CCCeeEEEECCeec-C---CCeeEeceEEe-eccceEEEEEEeecCCCCC
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGYPL-A---GDRFVMGQYMS-LHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~-~---~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~   74 (291)
                      |.|+..|.++.+.+|++++|.|.+.+.   |.+.|.|||++... .   ..++.+..... ......+.|+|.+++..|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            578899999999999999999999764   78999999974211 1   12222211111 1112357899999999999


Q ss_pred             eEEEEEEeCCCCceeeeeeEEEEc-CCCCC
Q psy14540         75 GIYQCTATNRVGSQTHSADMRVYD-APGQP  103 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~~~~l~v~~-~~~~~  103 (291)
                      |.|+|++.+..+..+..+.|+|.. ++..|
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p  117 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHESTGTTP  117 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEecCCCCC
Confidence            999999999999999999999998 54333

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.6e-16  Score=103.48  Aligned_cols=99  Identities=24%  Similarity=0.451  Sum_probs=82.4

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      .+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  .++..    .......+.|.|.+++..|+|.|+
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~   82 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTI----QRDLDGTCSLHTTASTLDDDGNYT   82 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEE----EECTTCEEEEEESSCCTTTCSCCE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEE----EECCCcEEEEEECCCChhhCEEEE
Confidence            378999999999999999999999999989999999999988763  23322    122344578999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCCCC
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPGQP  103 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~~~  103 (291)
                      |.+.|..|.....+.|.|...+..|
T Consensus        83 C~a~N~~g~~~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           83 IMAANPQGRISCTGRLMVQAVNSGP  107 (110)
T ss_dssp             EEEECTTCCEEECCCEEEECCSCCS
T ss_pred             EEEEECCCeEEEEEEEEEECCCCCC
Confidence            9999999999889999998876443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.71  E-value=4.1e-17  Score=119.40  Aligned_cols=140  Identities=20%  Similarity=0.381  Sum_probs=94.0

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.......      ......+     .+...+           
T Consensus        14 ~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~-----------   70 (212)
T 2v9r_A           14 EHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDP------RSHRMLL-----PSGSLF-----------   70 (212)
T ss_dssp             ECCCCEEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCT------TCSEEEC-----TTSCEE-----------
T ss_pred             cCCCceEEeCCCcEEEEEEc-CCCCCCEEEEEECCEEeecccccc------ccceEEe-----cCCcEE-----------
Confidence            34455788899999999999 678889999999998875432100      0000000     000000           


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEec-CCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNV-PPHIGPFTFGE-LMEGVRTQVACVVQSGD  267 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~-~p~~~~~~~~~-~~~g~~v~l~C~~~~~~  267 (291)
                                 ...+.|.++...|+|.|+|.+.|..+.. +..+.|.|.. ++.+...+... +.+|+.++|.|.+..+.
T Consensus        71 -----------~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~  139 (212)
T 2v9r_A           71 -----------FLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGH  139 (212)
T ss_dssp             -----------ESSCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEE
T ss_pred             -----------EEEEEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCC
Confidence                       1123445667788888888888877543 5566777765 34444333333 89999999999975678


Q ss_pred             CCceEEEEECCEEccCC
Q psy14540        268 LPLSLQWYKNGLAISQP  284 (291)
Q Consensus       268 p~~~v~W~~~~~~l~~~  284 (291)
                      |.+.+.|+++|..+...
T Consensus       140 p~~~v~W~~~~~~l~~~  156 (212)
T 2v9r_A          140 PEPTISWKKDGSPLDDK  156 (212)
T ss_dssp             SCCEEEEEETTEEECTT
T ss_pred             CCCEEEEEECCccCCCC
Confidence            88999999999998754

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.71  E-value=1.3e-16  Score=116.90  Aligned_cols=145  Identities=16%  Similarity=0.209  Sum_probs=91.8

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.+.|.|.+ .+.|.+.+.|++++.....  .            +.+....     .      ...+ ...
T Consensus         8 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~--~------------~~~~~~~-----~------~~~~-~~~   60 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESP--R------------LLIKYAS-----Q------SISG-IPS   60 (213)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCC--E------------EEEETTT-----E------ECTT-SCT
T ss_pred             CccEEEeCCCcEEEEEEC-CCCCCCCEEEEEeCCCCCc--E------------EEEEEcc-----c------cccc-ccc
Confidence            345778899999999998 6888889999985321100  0            0000000     0      0000 001


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEec---CCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNV---PPHIGPFTFGE-LMEGVRTQVACVVQSGD  267 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~-~~~g~~v~l~C~~~~~~  267 (291)
                      .+.+........|.|.++..+|+|.|+|.+.+..+. ......|.|..   +|.+....... ...|+.++|.|.+.++.
T Consensus        61 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~  140 (213)
T 3d9a_L           61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFY  140 (213)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEB
T ss_pred             cEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeec
Confidence            111222233557999999999999999999887643 23334566654   55555433332 55799999999994446


Q ss_pred             CCc-eEEEEECCEEccCC
Q psy14540        268 LPL-SLQWYKNGLAISQP  284 (291)
Q Consensus       268 p~~-~v~W~~~~~~l~~~  284 (291)
                      |++ .|.|+|||.++...
T Consensus       141 p~~~~v~W~k~g~~~~~~  158 (213)
T 3d9a_L          141 PKDINVKWKIDGSERQNG  158 (213)
T ss_dssp             SSCCEEEEEETTEEECTT
T ss_pred             CCceEEEEEcCCCcCcce
Confidence            665 89999999998765

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.71  E-value=6e-17  Score=117.08  Aligned_cols=121  Identities=14%  Similarity=0.164  Sum_probs=84.6

Q ss_pred             eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      .+.+|+.++|.|.+ .+ +.+.+.|++++..+......  .....                                   
T Consensus        15 ~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~--~~~~~-----------------------------------   55 (196)
T 3p2t_A           15 VISWGNSVTIWCQG-TL-EAREYRLDKEESPAPWDRQN--PLEPK-----------------------------------   55 (196)
T ss_dssp             EEETTCCEEEEEEC-CT-TCCEEEEEETTSCSCSEEEC--CCSSS-----------------------------------
T ss_pred             cCCCCCcEEEEeeC-CC-CCCEEEEEECCCCCcccccc--cccCC-----------------------------------
Confidence            67899999999998 45 67899999998766431100  00000                                   


Q ss_pred             EEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540        197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLS  271 (291)
Q Consensus       197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~  271 (291)
                          ....|.|.++..+|+|.|+|.+.|..+  ..+..+.|.|..   +|.+...+...+.+|+.++|.|.+ .+ +++.
T Consensus        56 ----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~-~~-~~~~  129 (196)
T 3p2t_A           56 ----NKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS-RS-PMDT  129 (196)
T ss_dssp             ----SEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEE-EE-EEEE
T ss_pred             ----ceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEec-CC-CCCE
Confidence                134567777777888888888888775  446667777753   344444444348899999999999 55 4568


Q ss_pred             EEEEECCEEcc
Q psy14540        272 LQWYKNGLAIS  282 (291)
Q Consensus       272 v~W~~~~~~l~  282 (291)
                      +.|+|+|..+.
T Consensus       130 ~~w~k~g~~~~  140 (196)
T 3p2t_A          130 FLLCKERAAHP  140 (196)
T ss_dssp             EEEEETTCCCG
T ss_pred             EEEEeCCCccc
Confidence            99999998764

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.71  E-value=2.5e-17  Score=119.23  Aligned_cols=122  Identities=12%  Similarity=0.144  Sum_probs=81.5

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ..+.+|+.++|.|.+ .+.|. .+.|++++..+.........                                      
T Consensus        14 ~~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~--------------------------------------   53 (198)
T 1ugn_A           14 SVITQGSPVTLRCQG-GQETQ-EYRLYREKKTAPWITRIPQE--------------------------------------   53 (198)
T ss_dssp             SEEETTCCEEEEEEC-CTTCC-CEEEEESSSCCHHHHTSCHH--------------------------------------
T ss_pred             CcccCCCcEEEEEEe-cCCCc-EEEEEECCcccccccccccc--------------------------------------
Confidence            367899999999998 56665 79999998766321100000                                      


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCC-c--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCC
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTV-A--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLP  269 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~  269 (291)
                         ......|.|.++..+|+|.|+|.+.|.. +  ..+..+.|.|..   +|.+...+...+.+|+.++|.|.+ .+. +
T Consensus        54 ---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~~~-~  128 (198)
T 1ugn_A           54 ---LVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDS-QVA-F  128 (198)
T ss_dssp             ---HHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEC-SSC-C
T ss_pred             ---CCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEec-CCC-C
Confidence               0013457777777778888888887765 4  445667777776   344444333448899999999999 666 6


Q ss_pred             ceEEEEECCEEcc
Q psy14540        270 LSLQWYKNGLAIS  282 (291)
Q Consensus       270 ~~v~W~~~~~~l~  282 (291)
                      +.+.|+|+|..+.
T Consensus       129 ~~v~W~k~g~~~~  141 (198)
T 1ugn_A          129 DGFILCKEGEDEH  141 (198)
T ss_dssp             SEEEEEEC-----
T ss_pred             cEEEEEECCCccC
Confidence            7999999998774

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.71  E-value=7.4e-17  Score=117.08  Aligned_cols=140  Identities=16%  Similarity=0.197  Sum_probs=89.1

Q ss_pred             eeecCCCceEEEEEeeC---CCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        116 IKVHSGDRAGVQCLVTK---GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~---~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +.+.+|+.+.|.|.+..   +.|.+.+.|++++..+...........                 ..|           ..
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~-----------------~~~-----------~~   55 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIW-----------------PEY-----------KN   55 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEEC-----------------HHH-----------HT
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeec-----------------Ccc-----------cc
Confidence            56789999999999842   235678999998876521100000000                 000           00


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC-----ceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN-----HSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGD  267 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~-----~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~  267 (291)
                      ...+. .....+|.|.++..+|+|.|+|.+.+..+...     ..+.|.|..++............|+.++|.|.+..|.
T Consensus        56 r~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~g~  134 (201)
T 1dr9_A           56 RTIFD-ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGF  134 (201)
T ss_dssp             TEEEE-STTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEEES
T ss_pred             eeEEc-cCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCCcc
Confidence            00000 01245789999999999999999998765442     4666777665321111111146789999999995599


Q ss_pred             CCceEEEEECCEEccCC
Q psy14540        268 LPLSLQWYKNGLAISQP  284 (291)
Q Consensus       268 p~~~v~W~~~~~~l~~~  284 (291)
                      |.|.|+|++||..+...
T Consensus       135 P~p~i~W~k~g~~l~~~  151 (201)
T 1dr9_A          135 PEPHLSWLENGEELNAI  151 (201)
T ss_dssp             SCEEEEEEESSCEECCS
T ss_pred             CCCEEEEEECCEECccc
Confidence            99999999999988754

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.71  E-value=1.1e-16  Score=119.50  Aligned_cols=131  Identities=26%  Similarity=0.452  Sum_probs=95.1

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.........                                   
T Consensus        22 ~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~-----------------------------------   65 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEHRIGGI-----------------------------------   65 (241)
T ss_dssp             CCEEEEETTSEEEEECCE-ECSSCCEEEEEETTEECCGGGSTTCC-----------------------------------
T ss_pred             CcceEEcCCCeEEEEEEe-cCCCCceeEEEECCcccCCCCcccce-----------------------------------
Confidence            445788899999999999 58888999999999887543221000                                   


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC----CCCCC-CCcc-cccCCceEEEEEEeecC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP----PHIGP-FTFG-ELMEGVRTQVACVVQSG  266 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~----p~~~~-~~~~-~~~~g~~v~l~C~~~~~  266 (291)
                          ........|.|.++..+|+|.|+|.+.+..+.....+.|.|...    |.+.. .+.. .+.+|+.++|.|.+ .+
T Consensus        66 ----~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~-~~  140 (241)
T 3grw_A           66 ----KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YS  140 (241)
T ss_dssp             ----EEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEE-EC
T ss_pred             ----eeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEE-ec
Confidence                01112446778888888888888888888777777777777652    22211 1222 28899999999999 88


Q ss_pred             CCCceEEEEE----CCEEccCC
Q psy14540        267 DLPLSLQWYK----NGLAISQP  284 (291)
Q Consensus       267 ~p~~~v~W~~----~~~~l~~~  284 (291)
                      .|.+.+.|++    +|..+...
T Consensus       141 ~p~p~v~W~~~~~~~g~~~~~~  162 (241)
T 3grw_A          141 DAQPHIQWLKHVEVNGSKVGPD  162 (241)
T ss_dssp             SSCCEEEEEEECCSSSCSSCTT
T ss_pred             CCCCEEEEEEcccCCCcccCCC
Confidence            8999999999    88877543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.71  E-value=4.8e-17  Score=119.35  Aligned_cols=123  Identities=12%  Similarity=0.043  Sum_probs=84.7

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ..+.+|+.++|.|.+ .+ +.+.+.|+|+|..+...... .. ..                                   
T Consensus        18 ~~v~~G~~vtL~C~~-~~-~~~~~~W~k~g~~~~~~~~~-~~-~~-----------------------------------   58 (218)
T 1uct_A           18 PVIPLDGSVKIQCQA-IR-EAYLTQLMIIKNSTYREIGR-RL-KF-----------------------------------   58 (218)
T ss_dssp             SEEETTCCEEEEECC-CT-TCSEEEEEEEETTEEEECSE-EC-C------------------------------------
T ss_pred             CccCCCCCEEEEEEc-CC-CCCEEEEEECCCcccccccc-cC-CC-----------------------------------
Confidence            467899999999998 45 67899999987654321100 00 00                                   


Q ss_pred             EEEeccce--EEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCC
Q psy14540        196 LRVNEYTS--SLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDL  268 (291)
Q Consensus       196 ~~~~~~~~--~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p  268 (291)
                          ....  .|.|.++..+|+|.|+|.+.|..+  ..+..+.|.|..   +|.+...+...+.+|+.++|.|.+ .+.|
T Consensus        59 ----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~-~~~~  133 (218)
T 1uct_A           59 ----WNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSS-AHIP  133 (218)
T ss_dssp             -------CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEEC-SSSC
T ss_pred             ----CcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeC-CCCC
Confidence                0012  577777778888888888887653  345566777764   455544444458999999999977 6777


Q ss_pred             CceEEEEECCEEcc
Q psy14540        269 PLSLQWYKNGLAIS  282 (291)
Q Consensus       269 ~~~v~W~~~~~~l~  282 (291)
                      .+.+.|+|+|..+.
T Consensus       134 ~~~~~W~k~g~~~~  147 (218)
T 1uct_A          134 FDRFSLAKEGELSL  147 (218)
T ss_dssp             CSEEEEEETTCSSC
T ss_pred             CCEEEEEECCCccc
Confidence            88999999998775

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.71  E-value=5.7e-17  Score=123.22  Aligned_cols=179  Identities=18%  Similarity=0.285  Sum_probs=86.0

Q ss_pred             cCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540         69 VRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI  148 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~  148 (291)
                      .++.|.+.|.|.+.+..+.......+.|..             .+..+.+.+|+.++|.|.+ .+ +.+.+.|++....-
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~~-------------~p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~   67 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMKVIQ-------------TPRYLVKGQGQKAKMRCIP-EK-GHPVVFWYQQNKNN   67 (270)
T ss_dssp             -------------------------CCCEE-------------ECSEEEEETTSCEEEEEEC-CT-TCCEEEEEEECTTC
T ss_pred             chhhhHHHHHHHHhccCCccccccceeEEe-------------CCCeEEEcCCCCEEEEEEe-cC-CCceEEEEEECCCC
Confidence            456788999999987655443333222222             2344678899999999998 34 67899999832100


Q ss_pred             cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC--
Q psy14540        149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV--  226 (291)
Q Consensus       149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~--  226 (291)
                        ........... . .......   ..+.|.-..              ......+|.|.++..+|+|.|.|.+.+..  
T Consensus        68 --~~~~~~~~~~~-~-~~~~~~~---~~~r~~~~~--------------~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~  126 (270)
T 3qib_D           68 --EFKFLINFQNQ-E-VLQQIDM---TEKRFSAEC--------------PSNSPCSLEIQSSEAGDSALYLCASSLNWSQ  126 (270)
T ss_dssp             --CEEEEEEEETT-E-EEEECHH---HHHHEEEEC--------------CTTSCEEEEESSCCGGGCEEEEEEEESCTTC
T ss_pred             --CcEEEEEECCC-C-ceecCCc---cCCcEEEEe--------------CCCcEEEEEECCCCHhHCeEEEEEEecCCCc
Confidence              00000000000 0 0000000   000111100              01124678899999999999999998642  


Q ss_pred             --ccCCceeEEEEec------CCCCCCCCcc--cccCCceEEEEEEeecCCCCc-eEEEEECCEEccC
Q psy14540        227 --ASDNHSSNLRVNV------PPHIGPFTFG--ELMEGVRTQVACVVQSGDLPL-SLQWYKNGLAISQ  283 (291)
Q Consensus       227 --~~~~~~~~l~v~~------~p~~~~~~~~--~~~~g~~v~l~C~~~~~~p~~-~v~W~~~~~~l~~  283 (291)
                        ........|.|..      +|.+......  .+..|+.++|+|.+.+..|.+ .+.|++||.++..
T Consensus       127 ~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~  194 (270)
T 3qib_D          127 DTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS  194 (270)
T ss_dssp             CCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             cceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCC
Confidence              1223344566655      3433332221  155699999999994446766 8999999999865

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.71  E-value=1.4e-16  Score=113.92  Aligned_cols=113  Identities=14%  Similarity=0.111  Sum_probs=80.7

Q ss_pred             eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      .+.+|+.++|.|.+ .+ +.+.+.|++++...      .                                         
T Consensus        18 ~v~~G~~v~L~C~~-~~-~~~~~~W~k~g~~~------~-----------------------------------------   48 (184)
T 2gi7_A           18 LVPLEKPVTLRCQG-PP-GVDLYRLEKLSSSR------Y-----------------------------------------   48 (184)
T ss_dssp             EEETTCCEEEEEEC-ST-TCSEEEEEETTTCC------E-----------------------------------------
T ss_pred             cccCCCcEEEEEeC-CC-CCCEEEEEECCccc------c-----------------------------------------
Confidence            68899999999998 45 77899999987540      0                                         


Q ss_pred             EEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540        197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLS  271 (291)
Q Consensus       197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~  271 (291)
                         .....|.|.++..+|+|.|+|.+.|..+  ..+..+.|.|..   +|.+...+...+.+|+.++|.|.+ .+.| +.
T Consensus        49 ---~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~-~~~~-~~  123 (184)
T 2gi7_A           49 ---QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQT-RYGF-DQ  123 (184)
T ss_dssp             ---ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEEC-SSCC-CE
T ss_pred             ---CcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEc-CCCC-cE
Confidence               0123566666777777777777777653  334556666643   444544444448899999999998 6554 59


Q ss_pred             EEEEECCEEccC
Q psy14540        272 LQWYKNGLAISQ  283 (291)
Q Consensus       272 v~W~~~~~~l~~  283 (291)
                      +.|+|+|..+..
T Consensus       124 ~~w~k~g~~~~~  135 (184)
T 2gi7_A          124 FALYKEGDPAPY  135 (184)
T ss_dssp             EEEEECCCCTTS
T ss_pred             EEEEECCCcCcc
Confidence            999999988753

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.70  E-value=4e-18  Score=134.33  Aligned_cols=126  Identities=21%  Similarity=0.319  Sum_probs=96.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.......                                     
T Consensus       165 ~~~~~v~~G~~v~L~C~~-~g~p~p~i~W~~~~~~~~~~~~~~-------------------------------------  206 (347)
T 2ifg_A          165 VPNASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATVMKS-------------------------------------  206 (347)
T ss_dssp             CCSSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEECCC-------------------------------------
T ss_pred             CCceEEeCCCcEEEEEEE-ecCCCCEEEEEcCCceeecccccc-------------------------------------
Confidence            345678899999999999 688999999999886542110000                                     


Q ss_pred             ceEEEEeccceEEEEeeeecCCCe-eEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSG-NYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLS  271 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~  271 (291)
                           .......|.|.++..+|+| .|+|.|.|..+.....+.|.|..+|.+   ....+.+|+.++|.|.+ .|.|.|.
T Consensus       207 -----~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i---~~~~~~~g~~v~l~C~~-~g~P~p~  277 (347)
T 2ifg_A          207 -----GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV---QLHTAVEMHHWCIPFSV-DGQPAPS  277 (347)
T ss_dssp             -----CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE---EECCCEESSSEEEEEEE-EEESCCE
T ss_pred             -----eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee---eeccCccCceEEEEEEe-eecCCCc
Confidence                 0012456788888888888 899999988888888888888877775   11226789999999999 8889999


Q ss_pred             EEEEECCEEccCCe
Q psy14540        272 LQWYKNGLAISQPD  285 (291)
Q Consensus       272 v~W~~~~~~l~~~~  285 (291)
                      |.|+++|..+..+.
T Consensus       278 i~W~~~g~~l~~~~  291 (347)
T 2ifg_A          278 LRWLFNGSVLNETS  291 (347)
T ss_dssp             EEEEETTEECCCCS
T ss_pred             EEEEeCCEECCCCc
Confidence            99999999997553

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.70  E-value=1.8e-16  Score=115.90  Aligned_cols=145  Identities=14%  Similarity=0.196  Sum_probs=90.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +....+.+|+.++|.|.+ .+.|.+.+.|+++....  ...            +.+....     .      ...+ ...
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~g~--~~~------------~~~~~~~-----~------~~~~-~~~   59 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQ--QPK------------LLIYKAS-----N------LASG-VPA   59 (210)
T ss_dssp             CSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTS--CCE------------EEEETTT-----E------ECTT-CCT
T ss_pred             CCcEEEcCCCCEEEEeeC-CCccCCCEEEEEECCCC--CeE------------EEEEccc-----c------ccCC-ccc
Confidence            455788999999999998 67888899999853110  000            0000000     0      0000 001


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEec---CCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNV---PPHIGPFTFGE-LMEGVRTQVACVVQSGD  267 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~-~~~g~~v~l~C~~~~~~  267 (291)
                      .+.+........|.|.++..+|+|.|.|.+.+..+. ......|.|..   +|.+...+... +..|+.++|.|.+.+..
T Consensus        60 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~  139 (210)
T 1lk3_L           60 RFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFY  139 (210)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEB
T ss_pred             cEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEe
Confidence            111212233457899999999999999999887643 22334566654   45555433322 45899999999994445


Q ss_pred             CCc-eEEEEECCEEccCC
Q psy14540        268 LPL-SLQWYKNGLAISQP  284 (291)
Q Consensus       268 p~~-~v~W~~~~~~l~~~  284 (291)
                      |++ .|.|+|||.++...
T Consensus       140 p~~~~v~W~k~g~~~~~~  157 (210)
T 1lk3_L          140 PRDISVKWKIDGTERRDG  157 (210)
T ss_dssp             SSCCEEEEEETTEECCTT
T ss_pred             CCceEEEEEeCCccCCCC
Confidence            654 99999999998655

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.8e-16  Score=100.97  Aligned_cols=90  Identities=23%  Similarity=0.399  Sum_probs=74.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...+.+..+.+|+.+.|.|.+  .|.+.+.|+|+|..+. ..++.+     ......+.|.|.+++.+|+|.|+|.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i-----~~~~~~~~L~I~~v~~~D~G~Y~C~   79 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKV-----VQKGRIHKLVIANALTEDEGDYVFA   79 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEE-----EECSSEEEEEESSCCGGGCSEEEEE
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEE-----EEeCCEEEEEECCCChhhCEEEEEE
Confidence            6889999999999999999999999  6788999999999987 444433     2233457799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +.|.  .......|.|..+|
T Consensus        80 a~N~--~~~~~a~L~V~~~P   97 (100)
T 2yuz_A           80 PDAY--NVTLPAKVHVISGP   97 (100)
T ss_dssp             ESSS--CCCEEEEEEEECCS
T ss_pred             EcCC--CeeEEEEEEEeCCC
Confidence            9986  55677788888765

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.69  E-value=1.1e-16  Score=118.75  Aligned_cols=129  Identities=28%  Similarity=0.414  Sum_probs=94.4

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      ....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.........                                    
T Consensus        27 ~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~------------------------------------   69 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGY------------------------------------   69 (231)
T ss_dssp             SCEEEETTSCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCC------------------------------------
T ss_pred             eeEEEccCCCEEEEEec-ccCCCCeEEEEECCccccccccccce------------------------------------
Confidence            45778899999999999 57888899999999887543221000                                    


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC----CCCCC-Ccc-cccCCceEEEEEEeecCC
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP----HIGPF-TFG-ELMEGVRTQVACVVQSGD  267 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p----~~~~~-~~~-~~~~g~~v~l~C~~~~~~  267 (291)
                         ........|.|.++..+|+|.|+|.+.|..+.....+.|.|...+    .+... +.. .+.+|+.++|.|.+ .+.
T Consensus        70 ---~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~  145 (231)
T 3ojm_B           70 ---KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKV-YSD  145 (231)
T ss_dssp             ---EEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCE-ECS
T ss_pred             ---eeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEE-ecC
Confidence               011123467888888888888888888888777777778776532    22221 222 28899999999999 888


Q ss_pred             CCceEEEEE----CCEEccC
Q psy14540        268 LPLSLQWYK----NGLAISQ  283 (291)
Q Consensus       268 p~~~v~W~~----~~~~l~~  283 (291)
                      |.+.+.|++    +|..+..
T Consensus       146 p~p~v~W~~~~~~~g~~~~~  165 (231)
T 3ojm_B          146 AQPHIQWIKHVEKNGSKYGP  165 (231)
T ss_dssp             SCCEEEEEEECCBTTBSBCT
T ss_pred             CCCEEEEEECCCCCCccccC
Confidence            999999999    7777643

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.69  E-value=2e-16  Score=101.01  Aligned_cols=93  Identities=24%  Similarity=0.357  Sum_probs=77.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .+...    .......++|.|.+++.+|+|.|+|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~   80 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYW----YWPEDNVCELVIRDVTGEDSASIMVK   80 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEE----EEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEE----EEcCCCEEEEEECCCCcCCCEEEEEE
Confidence            78898999999999999999999999988999999999998873 22221    11223456799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEc
Q psy14540         81 ATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~   98 (291)
                      +.|..|.....+.|.|..
T Consensus        81 a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           81 AINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCcEEEEEEEEEec
Confidence            999998888888887764

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.69  E-value=2e-16  Score=101.79  Aligned_cols=93  Identities=18%  Similarity=0.343  Sum_probs=78.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++..     .......+|.|.+++.+|+|.|+|.
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~D~G~Y~C~   82 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHY-----TNTSGVLTLEILDCHTDDSGTYRAV   82 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEE-----EEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEE-----EECCCEEEEEEcCCCcccCEEEEEE
Confidence            68888889999999999999999999989999999999998873 33322     2233456799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcC
Q psy14540         81 ATNRVGSQTHSADMRVYDA   99 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~   99 (291)
                      +.|..|.......|.|...
T Consensus        83 a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           83 CTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             EEETTEEEEEEEEEEEECC
T ss_pred             EEeCCCcEEEEEEEEEECC
Confidence            9999998888888888653

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.69  E-value=3.2e-16  Score=114.62  Aligned_cols=140  Identities=15%  Similarity=0.214  Sum_probs=91.3

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      .+.+.+|+.++|.|.+.   |.+.+.|+++....  ...            +.+.......            ......+
T Consensus         9 ~~~v~~G~~v~L~C~~~---~~~~v~W~k~~~~~--~~~------------~~~~~~~~~~------------~~~~~r~   59 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT---SNNFVSWYQQHAGK--APK------------LVIYDVNKRP------------SGVPDRF   59 (211)
T ss_dssp             EEEECTTCEEEEEEECC---CSSCEEEEEECTTS--CCE------------EEEBTTTBCC------------TTSCTTE
T ss_pred             eEEEcCCCCEEEEEEEC---CCCeEEEEEECCCC--CCE------------EEEEEecccC------------CCCcCcE
Confidence            57888999999999983   88899999842110  000            0000000000            0001111


Q ss_pred             EEEEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540        195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACVVQSGD  267 (291)
Q Consensus       195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~  267 (291)
                      .+.......+|.|.++..+|+|.|.|.+.+..+  .......|.|.    .+|.+...+... +..|+.++|.|.+.+..
T Consensus        60 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~  139 (211)
T 3tv3_L           60 SGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFY  139 (211)
T ss_dssp             EEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEB
T ss_pred             EEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeec
Confidence            222233456899999999999999999998876  45566677777    456555544333 45799999999994333


Q ss_pred             C-CceEEEEECCEEccC
Q psy14540        268 L-PLSLQWYKNGLAISQ  283 (291)
Q Consensus       268 p-~~~v~W~~~~~~l~~  283 (291)
                      | .+.+.|++||.++..
T Consensus       140 p~~~~v~W~k~g~~l~~  156 (211)
T 3tv3_L          140 PGAVTVAWKADSSPVKA  156 (211)
T ss_dssp             SSCCEEEEEETTEEECT
T ss_pred             CCCeEEEEEECCeecCC
Confidence            3 589999999999865

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.69  E-value=1.7e-16  Score=112.51  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=86.2

Q ss_pred             eeecCCCceEEEEEee-CCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        116 IKVHSGDRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      +.+.+|+.++|.|... ...+.+.+.|++++..+.....      +.    ..+     ...+.|.              
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~------~~----~~~-----~~~~r~~--------------   56 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKR------KM----KPF-----LKSGAFE--------------   56 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEET------TS----CCE-----ESSTTEE--------------
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcC------CC----eec-----CCCCeEE--------------
Confidence            5677999999999431 2356679999999865421000      00    000     0011111              


Q ss_pred             EEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceE
Q psy14540        195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSL  272 (291)
Q Consensus       195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v  272 (291)
                         + ..+++|.|.++..+|+|.|+|.+.|..+..  ...+.|.|..++.-.    .....+..++|.|.+ .+.|+|.|
T Consensus        57 ---~-~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p----~i~~~~~~v~L~C~~-~g~p~p~i  127 (176)
T 1hng_A           57 ---I-LANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKP----MIYWECSNATLTCEV-LEGTDVEL  127 (176)
T ss_dssp             ---E-CTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCC----EEEEETTTTEEEEEC-SSCSSCEE
T ss_pred             ---E-CCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCC----EEEecCCcEEEEEEe-cCCCCcEE
Confidence               1 113458999999999999999999988775  666777777643211    112234569999999 88888999


Q ss_pred             EEEECCEEccCC
Q psy14540        273 QWYKNGLAISQP  284 (291)
Q Consensus       273 ~W~~~~~~l~~~  284 (291)
                      .|++||++|...
T Consensus       128 ~W~~~g~~l~~~  139 (176)
T 1hng_A          128 KLYQGKEHLRSL  139 (176)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EEEECCEECCCC
Confidence            999999988643

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.69  E-value=1.5e-16  Score=101.78  Aligned_cols=95  Identities=25%  Similarity=0.470  Sum_probs=77.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ||.|...|....+.+|+.++|.|.+.+.|.+.+.|++++..+......   .........+.|.|.+++..|+|.|+|.+
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLH---KMIVSEKGLHSLIFEVVRASDAGAYACVA   81 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSS---CEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcE---EEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence            688888899999999999999999998888999999999887732110   01122334467999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEcC
Q psy14540         82 TNRVGSQTHSADMRVYDA   99 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~   99 (291)
                      .|..|.....+.|.|...
T Consensus        82 ~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           82 KNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             EETTEEEEEEEEEEEECC
T ss_pred             EcCCCeEEEEEEEEEEec
Confidence            999998888888888753

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.69  E-value=9.6e-17  Score=117.93  Aligned_cols=130  Identities=15%  Similarity=0.223  Sum_probs=85.2

Q ss_pred             ecCCCceEEEEEeeCCC---C-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        118 VHSGDRAGVQCLVTKGD---P-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~~---p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      +.+|+.++|.|.+. +.   | .+.+.|++++..+......            ..   ...+.|.|.-            
T Consensus        23 v~~G~~v~L~C~~~-g~~~~p~~~~v~W~k~~~~~~~~~~~------------~~---~~~~~~~~~~------------   74 (218)
T 2rgs_A           23 LMISLTPKVTCVVV-DVSEDDPDVQISWFVNNVEVHTAQTQ------------TH---REDYNSTIRV------------   74 (218)
T ss_dssp             HCTTSCCEEEEEEE-EECTTSCCEEEEEEETTEEECCCEEE------------EE---EETTTTEEEE------------
T ss_pred             hccCCCeeEEEEEc-CCccCCCceEEEEEECCccccCcccc------------cc---cccCCCeEEE------------
Confidence            67899999999995 54   4 4799999999776432100            00   0011233321            


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEE--EEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNL--RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL  268 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l--~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p  268 (291)
                              ...|.|.++..+|+|.|+|.|.|..+..  ...+.+  .+..+|.+...+... ...|+.++|.|.+.+.+|
T Consensus        75 --------~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P  146 (218)
T 2rgs_A           75 --------VSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNP  146 (218)
T ss_dssp             --------EEEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBS
T ss_pred             --------EEEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeC
Confidence                    2468888888899999999999876543  222211  334566554433332 346999999999944367


Q ss_pred             Cc-eEEEEECCEEccC
Q psy14540        269 PL-SLQWYKNGLAISQ  283 (291)
Q Consensus       269 ~~-~v~W~~~~~~l~~  283 (291)
                      ++ .|+|+|||..+..
T Consensus       147 ~~~~v~W~k~g~~~~~  162 (218)
T 2rgs_A          147 GDISVEWTSNGHTEEN  162 (218)
T ss_dssp             SCCEEEEEETTEEECC
T ss_pred             CCcEEEEEECCEeccC
Confidence            65 9999999998743

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.69  E-value=2.7e-16  Score=100.39  Aligned_cols=94  Identities=22%  Similarity=0.444  Sum_probs=77.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ||.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+......   .........++|.|.+++..|+|.|+|.+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   81 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRR---FAEEAEGGLCRLRILAAERGDAGFYTCKA   81 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTE---EEEECGGGEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCE---EEEECCCCEEEEEEccCCcCCCEEEEEEE
Confidence            788999999999999999999999998888999999999988732111   11123344568999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEc
Q psy14540         82 TNRVGSQTHSADMRVYD   98 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~   98 (291)
                      .|..|.....+.|.|.+
T Consensus        82 ~N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           82 VNEYGARQCEARLEVRG   98 (99)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCceeEEEEEEEEC
Confidence            99988888888887753

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.69  E-value=3.9e-16  Score=114.33  Aligned_cols=145  Identities=17%  Similarity=0.288  Sum_probs=92.4

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.++|.|.+ .+.|.+.+.|++.....  ..........  .       ....               ...
T Consensus         8 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~--~~~~~~~~~~--~-------~~~~---------------~~~   60 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQA-SQDISNYLNWYQQKPGK--APKLLIYYTN--K-------LADG---------------VPS   60 (213)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTS--CCEEEEETTT--E-------ECTT---------------CCT
T ss_pred             CCEEEecCCCcEEEEEEe-CCCcCceEEEEEECCCC--CcEEEEEEcC--c-------CCCC---------------CCC
Confidence            445788899999999999 67788999999843110  0000000000  0       0000               011


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc-cCCceeEEEE---ecCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA-SDNHSSNLRV---NVPPHIGPFTFGE-LMEGVRTQVACVVQSGD  267 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-~~~~~~~l~v---~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~  267 (291)
                      .+.+........|.|.++..+|+|.|.|.+.+..+ .......|.|   ..+|.+...+... +..|+.++|.|.+.+++
T Consensus        61 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~  140 (213)
T 3r06_A           61 RFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFY  140 (213)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEB
T ss_pred             cEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeec
Confidence            12222223456899999999999999999988653 2344456777   4456665544333 56788899999994444


Q ss_pred             C-CceEEEEECCEEccCC
Q psy14540        268 L-PLSLQWYKNGLAISQP  284 (291)
Q Consensus       268 p-~~~v~W~~~~~~l~~~  284 (291)
                      | .+.|.|++||..+..+
T Consensus       141 p~~~~v~W~k~g~~l~~~  158 (213)
T 3r06_A          141 PKDINVKWKVDGSEKRDG  158 (213)
T ss_dssp             SSCEEEEEEETTEEECTT
T ss_pred             CCceEEEEEECCcccCCc
Confidence            4 4699999999998754

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.68  E-value=6.7e-17  Score=119.93  Aligned_cols=164  Identities=13%  Similarity=0.255  Sum_probs=84.7

Q ss_pred             eEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCccee-ecCCCceEEEEEeeCCC--C-CceeEEeECCEeccC
Q psy14540         75 GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK-VHSGDRAGVQCLVTKGD--P-PLTISWLKNGLPILS  150 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~--p-~~~~~W~~~~~~~~~  150 (291)
                      |.|.|.+.+..+.  .... .+...      ....+..+.... +..|+.++|.|.+.+.+  | ...++|+++|..+..
T Consensus         1 ~~~~~~~~~~~~~--c~~~-~~~~~------P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~   71 (240)
T 4acp_A            1 GTKSCDKTHTCPP--CPAP-ELLGG------PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN   71 (240)
T ss_dssp             -------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECC
T ss_pred             CceeeeeeecCCC--CCcc-ccCCC------CEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCC
Confidence            6799998876542  1000 00011      112223333344 55799999999996555  4 448999999988743


Q ss_pred             CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC
Q psy14540        151 DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN  230 (291)
Q Consensus       151 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~  230 (291)
                      ....               .......|.|.-                    .+.|.|.....+|+|.|+|.|.+..+...
T Consensus        72 ~~~~---------------~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~~~YtC~v~h~~~~~~  116 (240)
T 4acp_A           72 AKTK---------------PREEQYNSTYRV--------------------VSVLTVLHQDWLNGKEYKCKVSNKALPAP  116 (240)
T ss_dssp             CEEC---------------CCEEC---CEEE--------------------EEEEECCHHHHHHTCCEEEEEECC----C
T ss_pred             ceec---------------cceECCCCeEEE--------------------EEEEEEechhccCCCEEEEEEEcCCCCcc
Confidence            2100               000112234432                    24567777777788999999998775332


Q ss_pred             ceeEEE----EecCCCCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEECCEEcc
Q psy14540        231 HSSNLR----VNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYKNGLAIS  282 (291)
Q Consensus       231 ~~~~l~----v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~  282 (291)
                      ....+.    +..+|.+.+.+... ...|+.++|.|.+.+.+|+ ..|.|+|||.++.
T Consensus       117 ~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~  174 (240)
T 4acp_A          117 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN  174 (240)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             ccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECC
Confidence            222221    23456655544433 3358999999999444666 4899999999875

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.68  E-value=7.1e-16  Score=110.24  Aligned_cols=115  Identities=21%  Similarity=0.388  Sum_probs=85.2

Q ss_pred             eeecCCCceEEEEEeeCCCCCc--eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPL--TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      ..+.+|+.++|.|.+ .+.|.+  .+.|++++..+.......                                      
T Consensus         8 ~~v~~G~~v~l~C~~-~~~~~p~~~~~W~k~~~~l~~~~~~~--------------------------------------   48 (184)
T 3b5h_A            8 TVEDLGSKILLTCSL-NDSATEVTGHRWLKGGVVLKEDALPG--------------------------------------   48 (184)
T ss_dssp             EEEEETTEEEEEEEE-ESCSSCCCEEEEESSSEEEECTTCCC--------------------------------------
T ss_pred             EEEecCCCEEEEEEC-CCCCCCceEEEEEeCCEEeecccccC--------------------------------------
Confidence            456789999999998 455655  999999997764432110                                      


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC-Cce
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL-PLS  271 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p-~~~  271 (291)
                             ....|.|.  ..+|+|.|+|.+.|   .....+.|.|..+|.+...+... +.+|+.++|.|.+ .+.| .+.
T Consensus        49 -------~~~~l~i~--~~~d~G~Y~C~~~n---~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~  115 (184)
T 3b5h_A           49 -------QKTEFKVD--SDDQWGEYSCVFLP---EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKS-ESVPPVTD  115 (184)
T ss_dssp             -------SEEEEEEC--GGGCCEEEEEEEES---TTSCEEEEEECCSCCCEESCSEEEECTTSCEEEEEEC-CCSSCCCE
T ss_pred             -------CcEEEEEe--chhhCeEEEEEEEC---CcCcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEE-CCCCCCCe
Confidence                   01123333  57889999999987   34467788899989887776554 8999999999999 7888 799


Q ss_pred             EEEEE----CCEEcc
Q psy14540        272 LQWYK----NGLAIS  282 (291)
Q Consensus       272 v~W~~----~~~~l~  282 (291)
                      +.|++    ++..+.
T Consensus       116 i~W~~~~~~~~~~~~  130 (184)
T 3b5h_A          116 WAWYKITDSEDKALM  130 (184)
T ss_dssp             EEEEECCSSSCEECC
T ss_pred             EEEEEcCCCCCEEee
Confidence            99999    444553

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.68  E-value=4.2e-15  Score=109.59  Aligned_cols=133  Identities=19%  Similarity=0.268  Sum_probs=83.6

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--Cee---cC----------CCeeEeceEEeeccceEEEEEE
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYP---LA----------GDRFVMGQYMSLHGDVISHVNI   66 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~---~~----------~~~~~~~~~~~~~~~~~~~l~i   66 (291)
                      .+...|..+.+.+|++++|.|.+.+.+  ...+.|++.  +..   +.          ..++....   ......++|.|
T Consensus         3 ~v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I   79 (229)
T 1hxm_A            3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDI---DIAKNLAVLKI   79 (229)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEE---EGGGTEEEEEE
T ss_pred             ccEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEE---cCCCCEEEEEE
Confidence            355677888999999999999998533  467999984  221   10          11121110   12345578999


Q ss_pred             eecCCCCCeEEEEEEeCCC------C--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-
Q psy14540         67 SSVRVEDSGIYQCTATNRV------G--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-  137 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~~~------~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-  137 (291)
                      .+++.+|+|.|.|.+.+..      .  .....+.|.|......+.       .+. +.+.. ...+|.|.+...+|.+ 
T Consensus        80 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~-------~P~-v~~~~-~~~~L~C~~~g~~P~~i  150 (229)
T 1hxm_A           80 LAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHT-------KPS-VFVMK-NGTNVACLVKEFYPKDI  150 (229)
T ss_dssp             SSCCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCB-------CCE-EEEEE-ETTEEEEEEESCBSSCC
T ss_pred             CcCCHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCc-------CCc-EEEcC-CCCeEEEEEEEEeCCCE
Confidence            9999999999999998652      1  122345677765221110       111 11111 1358999996667764 


Q ss_pred             eeEEeECCEecc
Q psy14540        138 TISWLKNGLPIL  149 (291)
Q Consensus       138 ~~~W~~~~~~~~  149 (291)
                      .+.|+++ ..+.
T Consensus       151 ~v~W~~~-~~~~  161 (229)
T 1hxm_A          151 RINLVSS-KKIT  161 (229)
T ss_dssp             EEEEECS-SEEE
T ss_pred             EEEEecC-CEEe
Confidence            8999998 6553

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=1.3e-16  Score=103.97  Aligned_cols=98  Identities=33%  Similarity=0.589  Sum_probs=81.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...+....+.+|+.++|.|.+.+.|.+.+.|++++..+... ....    .......++|.|.+++.+|+|.|+|.
T Consensus         9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm3_A            9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKM----LVRENGVHSLIIEPVTSRDAGIYTCI   84 (110)
T ss_dssp             CCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEE----EECTTSCEEEEESSCCGGGCSBBCEE
T ss_pred             CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEE----EEecCCeEEEEEeeCCcccCEEEEEE
Confidence            789999999999999999999999999899999999999887632 2111    12233456799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQP  103 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~  103 (291)
                      +.|..|.....+.|.|...+..|
T Consensus        85 a~n~~g~~~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           85 ATNRAGQNSFSLELVVAAKESGP  107 (110)
T ss_dssp             EECSSCEEEECCEEEEECCCCSS
T ss_pred             EECCCCEEEEEEEEEEeCCCCCC
Confidence            99999998889999998877544

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.68  E-value=3.6e-16  Score=114.91  Aligned_cols=146  Identities=16%  Similarity=0.241  Sum_probs=91.0

Q ss_pred             ceeecCCCceEEEEEeeCCC-CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        115 SIKVHSGDRAGVQCLVTKGD-PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      .+.+.+|+.++|.|.+ .+. |.+.+.|++....-  ...........+.  ...                 ..+ ....
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~--~~~~~~~~~~~~~--~~~-----------------~~~-~~~r   65 (218)
T 3s96_B            9 SASFSLGASAKLTCTL-NSQHSTYTIEWYQQQPLK--PPKYVMELKKDGS--HST-----------------GDG-IPDR   65 (218)
T ss_dssp             EEEEETTSCEEEEEEE-CGGGTTCCEEEEEECTTS--CCEEEEEECTTSC--EEE-----------------CSS-CCTT
T ss_pred             cEEECCCCcEEEEEEC-CCCCCCcEEEEEEECCCC--CeEEEEEEcccCc--ccc-----------------CCC-cccc
Confidence            5788899999999999 577 88999999843110  0000000000000  000                 000 0111


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc-----cCCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEEe
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA-----SDNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACVV  263 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-----~~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~~  263 (291)
                      +.+.......+|.|.++..+|+|.|.|.+.+..+     .......|.|.    .+|.+....... ...|+.++|.|.+
T Consensus        66 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~  145 (218)
T 3s96_B           66 FSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLI  145 (218)
T ss_dssp             EEEEEETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEE
T ss_pred             eEEecCCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEE
Confidence            2222233467799999999999999999988765     34555677777    345554433322 5677999999999


Q ss_pred             ecCCCCc-eEEEEECCEEccC
Q psy14540        264 QSGDLPL-SLQWYKNGLAISQ  283 (291)
Q Consensus       264 ~~~~p~~-~v~W~~~~~~l~~  283 (291)
                      .++.|++ .|.|++||.++..
T Consensus       146 ~g~~p~~~~v~W~k~g~~l~~  166 (218)
T 3s96_B          146 SNFSPSGVTVAWKANGTPITQ  166 (218)
T ss_dssp             EEEBSSCCEEEEEETTEEC--
T ss_pred             CcccCCCeEEEEEECCEECcC
Confidence            4446766 9999999999865

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.68  E-value=7.7e-16  Score=110.83  Aligned_cols=146  Identities=16%  Similarity=0.250  Sum_probs=89.8

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.++|.|.+..+.+.+.+.|++++..+..     +.........+...     +. .|           ..
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~-----~~~~~~~~~~~~~~-----~~-~~-----------~~   62 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAF-----IVPHETKSPEIHVT-----NP-KQ-----------GK   62 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEE-----EECCSSSCCEEEEC-----CH-HH-----------HT
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEE-----EecccCCCCceeec-----Cc-cc-----------cc
Confidence            44577889999999999843355679999998754310     00000000000000     00 00           00


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC---CCCCCCcccccCCc-eEEEEEEeecCCC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP---HIGPFTFGELMEGV-RTQVACVVQSGDL  268 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~g~-~v~l~C~~~~~~p  268 (291)
                      .+.  +. .+.+|.|.+++.+|+|.|+|.+.+..+.....+.|.|..++   .+.... .....|. .++|+|.+.++.|
T Consensus        63 R~~--~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p  138 (193)
T 2if7_A           63 RLN--FT-QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVEDADD  138 (193)
T ss_dssp             TEE--EC-TTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEESCCT
T ss_pred             cEE--EC-CCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEecCCC
Confidence            001  11 25679999999999999999999888665567788887653   222221 1134465 8999999944466


Q ss_pred             CceEEEEECCEEccCC
Q psy14540        269 PLSLQWYKNGLAISQP  284 (291)
Q Consensus       269 ~~~v~W~~~~~~l~~~  284 (291)
                      .|.|.|+++|..+..+
T Consensus       139 ~p~i~W~~~g~~l~~~  154 (193)
T 2if7_A          139 NVSFRWEALGNTLSSQ  154 (193)
T ss_dssp             TCEEEEEETTEEEESS
T ss_pred             ceEEEEEeCCEEcCCC
Confidence            8999999999987544

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.68  E-value=3.4e-16  Score=112.01  Aligned_cols=129  Identities=17%  Similarity=0.277  Sum_probs=73.4

Q ss_pred             eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEee-CCCCCceeEEEEEEecCCCCCCceE
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT-LSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ...+|+.+.|.|.+ .+ +. .+.|+++|..+....          ...|.|.+ +..+|+|.|+|.|.|..|.....+.
T Consensus        10 v~~~G~~v~L~C~~-~~-~~-~i~W~k~g~~l~~~~----------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~   76 (186)
T 1jbj_A           10 VSISGTSVELTCPL-DS-DE-NLKWEKNGQELPQKH----------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK   76 (186)
T ss_dssp             EEEETTEEEEECSS-CC-CT-TCEEEETTEEECSCC----------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEEC
T ss_pred             EEeCCcEEEEEEeC-CC-CC-ceEEEECCEECCCCC----------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEE
Confidence            34679999999998 45 43 499999999886531          22477777 7777777777776666554222221


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc--------ccccCCceEEEEEEeecCC
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF--------GELMEGVRTQVACVVQSGD  267 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~--------~~~~~g~~v~l~C~~~~~~  267 (291)
                      +.+....        .....             ......+.+..+|.+.....        ..+.+|+.+.|.|.+    
T Consensus        77 ~~v~~~~--------~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~----  131 (186)
T 1jbj_A           77 ARVGSAD--------DAKKD-------------AAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL----  131 (186)
T ss_dssp             CCCCSCC--------CCCCC-------------CCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS----
T ss_pred             EEEeccc--------ccccc-------------cccccccccCCccccccccccccccccceecCCCCeEEEEeeC----
Confidence            1111000        00000             00000000111122211111        125599999999986    


Q ss_pred             CCceEEEEECCEEccC
Q psy14540        268 LPLSLQWYKNGLAISQ  283 (291)
Q Consensus       268 p~~~v~W~~~~~~l~~  283 (291)
                      |.|.|.|+|||.+|..
T Consensus       132 p~p~i~W~k~g~~i~~  147 (186)
T 1jbj_A          132 TDKTIKWLKDGSIISP  147 (186)
T ss_dssp             SCSCEEEEETTEECCC
T ss_pred             CCCeEEEEECCEECcc
Confidence            7889999999999863

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.68  E-value=2.2e-16  Score=101.76  Aligned_cols=90  Identities=26%  Similarity=0.530  Sum_probs=64.9

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+....++.+...+                              
T Consensus        18 ~~p~~~~v~~G~~~~l~C~~-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~------------------------------   66 (107)
T 3knb_B           18 RFPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLAASERLSFPADG------------------------------   66 (107)
T ss_dssp             ECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEECCEET------------------------------
T ss_pred             eCCCcEEEeCCCcEEEEEEE-EEecCCEEEEEECcccccceeeEEEeecC------------------------------
Confidence            34456788999999999999 69999999999999998766554433221                              


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                                ...+|.|.++..+|+|.|+|.|.|..|....++.|.|..+|
T Consensus        67 ----------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           67 ----------AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             ----------TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             ----------ceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence                      12356666677777777777777777777777777776654

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.67  E-value=2.2e-16  Score=99.44  Aligned_cols=89  Identities=19%  Similarity=0.335  Sum_probs=74.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++  ..+..... .     ........|.|.+++.+|+|.|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~-~-----~~~~~~~~L~i~~~~~~D~G~Y~C   75 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL-V-----DAKSSTTSIFFPSAKRADSGNYKL   75 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSE-E-----EEETTEEEEECTTBCGGGCEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEE-E-----EecCCEEEEEECCCChhcCEEEEE
Confidence            789988888899999999999999999999999999999  77763321 1     111334679999999999999999


Q ss_pred             EEeCCCCceeeeeeEEE
Q psy14540         80 TATNRVGSQTHSADMRV   96 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v   96 (291)
                      .+.|..|.....+.|.|
T Consensus        76 ~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           76 KVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEE
Confidence            99999998877777766

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.67  E-value=5.6e-16  Score=113.39  Aligned_cols=145  Identities=12%  Similarity=0.178  Sum_probs=89.1

Q ss_pred             CcceeecCCCceEEEEEeeCCCC---CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP---PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      +....+.+|+.++|.|.+ .+.|   .+.+.|++++...    ..          .+.+...     +.+      ..+ 
T Consensus         7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~----~~----------~~~~~~~-----~~~------~~~-   59 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRS-STGAVTTSNYANWVQEKPDH----LF----------TGLIGGT-----NNR------APG-   59 (212)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSSCCCGGGCCEEEEEETTT----EE----------EEEEETT-----TEE------CTT-
T ss_pred             CCeEeecCCCCEEEEEEe-cccccCCCCeEEEEEeCCCC----Cc----------eEEEEcC-----ccc------CCc-
Confidence            455778899999999999 5665   4789999853100    00          0000000     000      000 


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEEe
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACVV  263 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~~  263 (291)
                      ....+.+........|.|.++..+|+|.|.|.+.+..+. ......|.|.    .+|.+...+... +..|+.++|.|.+
T Consensus        60 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  139 (212)
T 1q0x_L           60 VPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTI  139 (212)
T ss_dssp             CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEE
T ss_pred             ccccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEE
Confidence            011122222233567999999999999999999887642 2334456663    355554433322 5579999999999


Q ss_pred             ecCCCCc-eEEEEECCEEccCC
Q psy14540        264 QSGDLPL-SLQWYKNGLAISQP  284 (291)
Q Consensus       264 ~~~~p~~-~v~W~~~~~~l~~~  284 (291)
                      .+.+|++ .|.|+|||+.+..+
T Consensus       140 ~g~~p~~~~v~W~k~g~~l~~~  161 (212)
T 1q0x_L          140 TDFYPGVVTVDWKVDGTPVTAG  161 (212)
T ss_dssp             EEEBSSCCEEEEEETTEEECTT
T ss_pred             EEEeCCCeEEEEEECCEeCCCC
Confidence            4445553 99999999988654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.67  E-value=2.6e-16  Score=116.68  Aligned_cols=153  Identities=16%  Similarity=0.313  Sum_probs=97.5

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      .+....+.+|+.+.|.|.+ .+.+. +.+.|++++...... .....         ..      ....|.-.+....+..
T Consensus         6 ~p~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~-~~~~~---------~~------~~~~~~~r~~~~~~~~   68 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTP-TGTHDHYMLEWFLTDRSGARP-RLASA---------EM------QGSELQVTMHDTRGRS   68 (231)
T ss_dssp             CCSEEEEETTCCEEECCCC-BSCCSEEEEEEEEECTTCCCC-EEEEE---------EE------ETTEEEEEECCCSCCS
T ss_pred             CCCcEEEEcCCCEEEeccc-CCCCCceEEEEEEeCCCceeE-EEEec---------cc------cCCccccccccccccc
Confidence            3456788999999999998 57774 899999865432100 00000         00      0001111111000000


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEEecCCCCCC---CCccc-ccCCceE-EEEEEee
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVNVPPHIGP---FTFGE-LMEGVRT-QVACVVQ  264 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v~~~p~~~~---~~~~~-~~~g~~v-~l~C~~~  264 (291)
                      . ..  .+. ....|.|.++..+|+|.|+|.+.+.. +.....+.|.|..+|....   .+... +.+|+.+ +|.|.+.
T Consensus        69 ~-~~--~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~  144 (231)
T 2pet_A           69 P-PY--QLD-SQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSR  144 (231)
T ss_dssp             S-CC--EEC-TTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEE
T ss_pred             c-cc--ccC-CCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeE
Confidence            0 00  011 12348999999999999999999887 7777888888887754322   22222 6789988 9999997


Q ss_pred             cCCCCceEEEEECCEEccCCe
Q psy14540        265 SGDLPLSLQWYKNGLAISQPD  285 (291)
Q Consensus       265 ~~~p~~~v~W~~~~~~l~~~~  285 (291)
                      .+.|.+.+.|+++|.++....
T Consensus       145 ~~~p~p~i~W~~~~~~~~~~~  165 (231)
T 2pet_A          145 NGNPAPKITWYRNGQRLEVPV  165 (231)
T ss_dssp             EEBSCCEEEEEETTEECCCCS
T ss_pred             CcccCCEEEEEECCccCcccc
Confidence            788999999999999986554

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.67  E-value=7.7e-16  Score=110.40  Aligned_cols=121  Identities=13%  Similarity=0.169  Sum_probs=82.2

Q ss_pred             eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      .+.+|+.++|.|.+ .+ +.+.+.|+|++..+......  ....                                    
T Consensus        14 ~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~--~~~~------------------------------------   53 (188)
T 1oll_A           14 MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPK--PPER------------------------------------   53 (188)
T ss_dssp             EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCS--SCTT------------------------------------
T ss_pred             cCCCCCCEEEEEec-CC-CCCEEEEEECCCcccccccc--cCCC------------------------------------
Confidence            67899999999998 44 45789999998765311000  0000                                    


Q ss_pred             EEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540        197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLS  271 (291)
Q Consensus       197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~  271 (291)
                         .....|.|.++..+|+|.|+|.+.|..+  ..+..+.|.|..   +|.+...+...+.+|+.++|.|.+ .+. ++.
T Consensus        54 ---~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~-~~~-~~~  128 (188)
T 1oll_A           54 ---INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTA-TSM  128 (188)
T ss_dssp             ---CCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEEC-SSS-CSE
T ss_pred             ---cceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEc-CCC-CCE
Confidence               0134567777777788888888877543  335667777764   455544444448899999999998 554 568


Q ss_pred             EEEEECCEEcc
Q psy14540        272 LQWYKNGLAIS  282 (291)
Q Consensus       272 v~W~~~~~~l~  282 (291)
                      +.|+|+|..+.
T Consensus       129 ~~w~k~g~~~~  139 (188)
T 1oll_A          129 FLLLKEGRSSH  139 (188)
T ss_dssp             EEEEEESSSCE
T ss_pred             EEEEECCcccc
Confidence            99999997664

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.67  E-value=5.5e-16  Score=113.50  Aligned_cols=147  Identities=22%  Similarity=0.332  Sum_probs=95.5

Q ss_pred             cceeecCCCceEEEEEeeCCCC----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+.+.+|+.+.|.|.+ .+.+    .+.+.|++++..............+.    ..+........+.+.....     
T Consensus         8 ~~v~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~~~~~-----   77 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGD----KIYDNYYPDLKGRVHFTSN-----   77 (214)
T ss_dssp             EEEEEETTSCEEECCBC-CCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETT----EEECCCCGGGTTTEEESCS-----
T ss_pred             ceEEEecCCCEEEEEEE-ecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCC----eEccccCCccccceEEecc-----
Confidence            45778899999999998 5555    46999998543221111111000000    0000000000011100000     


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL  268 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p  268 (291)
                             .......+|.|.++..+|+|.|+|.+.+..+.....+.|.|..+|.+....... +.+|+.++|.|.+..+.|
T Consensus        78 -------~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p  150 (214)
T 3jz7_A           78 -------DVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSL  150 (214)
T ss_dssp             -------CGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCS
T ss_pred             -------CccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCC
Confidence                   011235679999999999999999999988888888999999888776554443 889999999999977899


Q ss_pred             CceEEEEEC
Q psy14540        269 PLSLQWYKN  277 (291)
Q Consensus       269 ~~~v~W~~~  277 (291)
                      .+.+.|+++
T Consensus       151 ~~~v~W~~~  159 (214)
T 3jz7_A          151 PLQFEWQKL  159 (214)
T ss_dssp             SCEEEEEEC
T ss_pred             CCEEEEEEC
Confidence            999999994

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.67  E-value=1e-16  Score=114.62  Aligned_cols=138  Identities=13%  Similarity=0.127  Sum_probs=87.3

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC--CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS--DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      .+.+.+|+.++|.|.+ .+.|.+.+.|++++..+..  .......             ......+.+             
T Consensus         4 ~v~~~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~-------------~~~~~~~r~-------------   56 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTK-------------GPSKLNDRA-------------   56 (184)
T ss_dssp             EEEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEE-------------CSCTTGGGE-------------
T ss_pred             cEEEeCCCCEEEEEEE-cCCCceEEEEEeCCccceEEecCceEec-------------CChhhCCcc-------------
Confidence            3578899999999998 5888899999998753211  0000000             000000000             


Q ss_pred             ceEEEE---eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCC
Q psy14540        193 SSNLRV---NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP  269 (291)
Q Consensus       193 ~~~~~~---~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~  269 (291)
                        .+..   .....+|.|.++..+|+|.|+|.+.+..+    .+.|.|...+   ..+...+.+|+.++|.|.+ .+.|.
T Consensus        57 --~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~----~~~l~V~~~~---~~~~~~v~~g~~~~l~C~~-~~~p~  126 (184)
T 2ny1_B           57 --DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE----EVQLLVFGLT---ANSDTHLLQGQSLTLTLES-PPGSS  126 (184)
T ss_dssp             --ECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEEE----EEEEEEEEEE---ESSCSEEETTCCEEEEEEC-CTTCC
T ss_pred             --ccccccccCCeEEEEEecCCHHHCEEEEEEEEcCCC----cEEEEEEEec---CCCCceeecCCCEEEEEEc-CCCCC
Confidence              0000   11244588888888899999998887654    4455554321   2222347899999999999 77899


Q ss_pred             ceEEEEECCEEccCCeeeEe
Q psy14540        270 LSLQWYKNGLAISQPDISIT  289 (291)
Q Consensus       270 ~~v~W~~~~~~l~~~~~~~~  289 (291)
                      +.+.|+++|..+......+.
T Consensus       127 ~~v~W~~~~~~~~~~~~~L~  146 (184)
T 2ny1_B          127 PSVQCRSPRGKNIQGGKTLS  146 (184)
T ss_dssp             CEEEEECTTSCEEEESSEEE
T ss_pred             CEEEEEeCCCccccCceEEE
Confidence            99999999876644433333

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=7.8e-16  Score=101.53  Aligned_cols=94  Identities=20%  Similarity=0.303  Sum_probs=75.9

Q ss_pred             CCcceee---cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYK---FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~---~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +|.|...   +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...+...     ......+.|.|.+++..|+|.|+
T Consensus        21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~~~~~L~i~~~~~~D~G~Y~   95 (118)
T 2e7c_A           21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHV-----RTSDFDTVFFVRQAARSDSGEYE   95 (118)
T ss_dssp             EEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEE-----EECSSEEEEEESSCCTTTCEEEE
T ss_pred             CCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEE-----EECCCeEEEEECCCChhcCEEEE
Confidence            4556442   456789999999999999999999999999999887433332     12344567999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCC
Q psy14540         79 CTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      |.+.|..|.....+.|.|...|
T Consensus        96 C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           96 LSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEEECSSCEECCEEEEEEECCC
T ss_pred             EEEEeCCCeEEEEEEEEEEcCC
Confidence            9999999988888888888654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.67  E-value=2.5e-16  Score=118.25  Aligned_cols=156  Identities=18%  Similarity=0.290  Sum_probs=93.3

Q ss_pred             CcceeecCCCceEEEEEeeCC---CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCC--CceeEEEEEEecC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKG---DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG--HSGNYTCVASNTV  187 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~---~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--d~g~y~C~~~~~~  187 (291)
                      +..+.+.+|+.++|.|.+ .+   .|.+.+.|++++....   ...+...     .....+....  ....+. ..   .
T Consensus         9 ~~~v~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~---~   75 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSY-QLANDTQPPVISWLKGASPDR---STKVFKG-----NYNWQGEGLGFVESDSYK-ES---F   75 (250)
T ss_dssp             CSEEEECTTSCEEECCEE-EECSCCSCCEEEEEEEEETTE---EEEEEEE-----EECCCBTTBCCCTTSEEE-EE---C
T ss_pred             CCceEEecCCeEEEEEEe-EcCCCCCceEEEEEeCCCCCc---cEEEEee-----cccccccccccccccccc-cc---C
Confidence            345788899999999998 44   7788999999875421   0000000     0000000000  000000 00   0


Q ss_pred             CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-----CceeEEEEecC---CCCCCCCcc--cccCCceE
Q psy14540        188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-----NHSSNLRVNVP---PHIGPFTFG--ELMEGVRT  257 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-----~~~~~l~v~~~---p~~~~~~~~--~~~~g~~v  257 (291)
                      ........+ .......|.|.++..+|+|.|+|.+.+..+..     ...+.|.|..+   |.+......  .+.+|+.+
T Consensus        76 ~~~~~r~~~-~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v  154 (250)
T 2fbo_J           76 GDFLGRASV-ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDI  154 (250)
T ss_dssp             GGGTTTEEC-SCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCE
T ss_pred             CCcCceEEe-ccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcE
Confidence            000000000 00124579999999999999999999877543     34777888764   333332222  27789999


Q ss_pred             EEEEEeecCCCCceEEEEECCEEccC
Q psy14540        258 QVACVVQSGDLPLSLQWYKNGLAISQ  283 (291)
Q Consensus       258 ~l~C~~~~~~p~~~v~W~~~~~~l~~  283 (291)
                      +|.|.+ .+.|.|.|.|+|++..+..
T Consensus       155 ~L~C~~-~g~p~p~v~W~k~~~~~~~  179 (250)
T 2fbo_J          155 TMTCPC-TDCANANVTWYTGPTFFEN  179 (250)
T ss_dssp             EECCCE-ESCTTCEEEEEEEEECSSC
T ss_pred             EEEEEe-cCCCCCeeEEEeCCCcccc
Confidence            999999 8888889999999988754

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.67  E-value=5.7e-16  Score=98.85  Aligned_cols=92  Identities=24%  Similarity=0.475  Sum_probs=76.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ..++..     ......+.|.|.+++.+|+|.|+|.
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKL-----SEDKGGFFLEIHKTDTSDSGLYTCT   80 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEE-----EEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEE-----EEeCCEEEEEECCCCcccCEEEEEE
Confidence            6888889999999999999999999988889999999999887 333332     1223446799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEc
Q psy14540         81 ATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~   98 (291)
                      +.|..|.....+.|.|..
T Consensus        81 a~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           81 VKNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCcEeEEEEEEEEe
Confidence            999888888888777753

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.66  E-value=5.2e-16  Score=113.89  Aligned_cols=146  Identities=16%  Similarity=0.217  Sum_probs=88.4

Q ss_pred             CcceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      +....+.+|+.++|.|.+..+.+ .+.+.|++++....  ..            +.+......           ..+ ..
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~--~~------------~~~~~~~~~-----------~~~-~~   60 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTA--PK------------LLIYDNNKR-----------PSG-IP   60 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSC--CE------------EEEBTTTBC-----------CTT-CC
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCC--cE------------EEEEecCcc-----------CCC-CC
Confidence            34578889999999999534443 57999998542100  00            000000000           000 00


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEe---cCCCCCCCCcc-cccCCceEEEEEEeec
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVN---VPPHIGPFTFG-ELMEGVRTQVACVVQS  265 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~---~~p~~~~~~~~-~~~~g~~v~l~C~~~~  265 (291)
                      ..+.+........|.|.++..+|+|.|.|.+.|..+  .......|.|.   .+|.+...... ....|+.++|.|.+.+
T Consensus        61 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g  140 (216)
T 2xzc_L           61 DRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNN  140 (216)
T ss_dssp             TTEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred             CceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEe
Confidence            111222223356789999999999999999998764  22334456665   34555443222 2346899999999944


Q ss_pred             CCCCc-eEEEEECCEEccCC
Q psy14540        266 GDLPL-SLQWYKNGLAISQP  284 (291)
Q Consensus       266 ~~p~~-~v~W~~~~~~l~~~  284 (291)
                      +.|++ .|.|+|||.++..+
T Consensus       141 ~~P~~~~v~W~k~g~~~~~~  160 (216)
T 2xzc_L          141 FYPREAKVQWKVDNALQSGN  160 (216)
T ss_dssp             EBSSCCEEEEEETTEECCSS
T ss_pred             EcCCceEEEEEECCeecCCC
Confidence            46664 99999999998665

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.66  E-value=1.5e-15  Score=95.21  Aligned_cols=87  Identities=17%  Similarity=0.258  Sum_probs=68.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...+.+..+.+|++++|.|.+.+ +.+.+.|+|+|..+. ..++.+     .......+|.|.+++.+|+|.|+|.
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i-----~~~g~~~~L~I~~v~~~D~G~Y~C~   78 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEI-----IEDGKKHILILHNCQLGMTGEVSFQ   78 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEE-----EEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEE-----EEECCEEEEEECCCChhhCEEEEEE
Confidence            688999999999999999999999976 457899999999987 334332     1223446799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEc
Q psy14540         81 ATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~   98 (291)
                      +.|    ...+..|.|.+
T Consensus        79 a~n----~~~sa~L~V~~   92 (93)
T 1waa_A           79 AAN----TKSAANLKVKE   92 (93)
T ss_dssp             ETT----EEEEEEEEEEC
T ss_pred             ECC----CcEEEEEEEEc
Confidence            975    34556666653

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=2.3e-16  Score=115.48  Aligned_cols=143  Identities=18%  Similarity=0.246  Sum_probs=88.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      +....+.+|+.++|.|.+ .+.|.+.+.|++++  ..+.                +.+......           . ...
T Consensus         6 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~----------------~~~~~~~~~-----------~-~~~   56 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNIL----------------LLIYMDNKR-----------P-SGI   56 (212)
T ss_dssp             CSEEEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEE----------------EEEBTTTBC-----------C-TTS
T ss_pred             CCeEEEeCCCcEEEEEec-CCCCCCeEEEEEECCCCCcE----------------EEEEecccc-----------C-CCc
Confidence            445788899999999997 67777889999853  2110                000000000           0 000


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEE
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACV  262 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~  262 (291)
                      ...+.+........|.|.++..+|+|.|.|.+.|...   .......|.|.    .+|.+....... +.+|+.++|.|.
T Consensus        57 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~  136 (212)
T 1nfd_E           57 PERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCL  136 (212)
T ss_dssp             CTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEE
T ss_pred             cccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEE
Confidence            1112222223356788999999999999999986321   12333456663    345555433332 568999999999


Q ss_pred             eecCCCC-ceEEEEECCEEccCC
Q psy14540        263 VQSGDLP-LSLQWYKNGLAISQP  284 (291)
Q Consensus       263 ~~~~~p~-~~v~W~~~~~~l~~~  284 (291)
                      +.+..|+ +.|.|++||.++...
T Consensus       137 ~~g~~p~~~~v~W~k~g~~~~~~  159 (212)
T 1nfd_E          137 VNDFYPGSATVTWKANGATINDG  159 (212)
T ss_dssp             EEEEBSSCCEEEEEETTEEECSS
T ss_pred             EEeeECCccEEEEEECCeEcCCC
Confidence            9444465 899999999998654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.66  E-value=2.9e-16  Score=114.44  Aligned_cols=130  Identities=12%  Similarity=0.220  Sum_probs=85.9

Q ss_pred             ecCCCceEEEEEeeCCC---C-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        118 VHSGDRAGVQCLVTKGD---P-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~~---p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      +.+|+.++|.|.+. +.   | ...+.|++++..+..... .            .  ......|.|.-            
T Consensus        15 v~~G~~v~L~C~~~-g~~~~p~~~~v~W~k~~~~~~~~~~-~------------~--~~~~~~~~~~~------------   66 (207)
T 2vol_A           15 LTITLTPKVTCVVV-DISKDDPEVQFSWFVDDVEVHTAQT-K------------P--REEQFNSTFRS------------   66 (207)
T ss_dssp             HSTTSCCEEEEEEE-EECTTCCCCEEEEEETTEEECCCEE-E------------C--CCEETTTEEEE------------
T ss_pred             hccCCceEEEEEEe-CcccCCCceEEEEEECCcccccccc-C------------C--CcCcCCCcEEE------------
Confidence            77999999999995 55   3 358999999976642110 0            0  00011233321            


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCc--eeEE--EEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH--SSNL--RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL  268 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~--~~~l--~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p  268 (291)
                              ...|.|.++..+|+|.|+|.|.|..+....  .+.+  .+..+|.+...+... ...|+.++|.|.+.+.+|
T Consensus        67 --------~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P  138 (207)
T 2vol_A           67 --------VSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFP  138 (207)
T ss_dssp             --------EEEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBS
T ss_pred             --------EEEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEEC
Confidence                    246888888899999999999988765322  3322  344566655443332 346999999999944456


Q ss_pred             C-ceEEEEECCEEccC
Q psy14540        269 P-LSLQWYKNGLAISQ  283 (291)
Q Consensus       269 ~-~~v~W~~~~~~l~~  283 (291)
                      + +.|.|+|||.++.+
T Consensus       139 ~~~~v~W~k~g~~l~~  154 (207)
T 2vol_A          139 EDITVEWESNGQPAEN  154 (207)
T ss_dssp             SCCEEEEEETTEECSC
T ss_pred             CCCEEEEEECCEeccC
Confidence            5 49999999998854

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.66  E-value=9.8e-17  Score=116.32  Aligned_cols=129  Identities=19%  Similarity=0.314  Sum_probs=81.2

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCC--CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD--AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      .+....+.+|+.+.|.|....+.|. +.+.|++++..+...  .+.....                              
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~------------------------------   63 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ------------------------------   63 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECT------------------------------
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEc------------------------------
Confidence            3455788999999999993268888 999999998776421  1111111                              


Q ss_pred             CCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC---ceeEEEEe-------cCCCCCCCCcc-cccCCceE
Q psy14540        189 SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN---HSSNLRVN-------VPPHIGPFTFG-ELMEGVRT  257 (291)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~---~~~~l~v~-------~~p~~~~~~~~-~~~~g~~v  257 (291)
                                  ....|.|.++..+|+|.|+|.+.+..+...   ..+.+.+.       .+|.+...... .+.+|+.+
T Consensus        64 ------------~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~  131 (201)
T 3s97_C           64 ------------TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNV  131 (201)
T ss_dssp             ------------TTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCE
T ss_pred             ------------CCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcE
Confidence                        123355555555566666666655432211   12222221       12223222222 27899999


Q ss_pred             EEEEEeecCCCCceEEEEECCEEccC
Q psy14540        258 QVACVVQSGDLPLSLQWYKNGLAISQ  283 (291)
Q Consensus       258 ~l~C~~~~~~p~~~v~W~~~~~~l~~  283 (291)
                      +|.|.+ .+.|.+.+.|++++..+..
T Consensus       132 ~l~C~~-~g~p~p~v~W~~~~~~~~~  156 (201)
T 3s97_C          132 TLECFA-LGNPVPDIRWRKVLEPMPS  156 (201)
T ss_dssp             EEEEEE-EEESCCEEEEEETTBCCCT
T ss_pred             EEEEEc-cCCCCCceEEEeCCCcCCC
Confidence            999999 8889999999999998764

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=5.5e-16  Score=102.27  Aligned_cols=92  Identities=29%  Similarity=0.501  Sum_probs=77.2

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      .||.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+..  .++..     ...   .+|.|.+++.+|+|.|+
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~-----~~~---~~L~i~~v~~~D~G~Y~   78 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQ-----LEN---GVLQIRYAKLGDTGRYT   78 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEE-----EET---TEEEEESCCGGGCCCEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEE-----ccC---CEEEEccCCcCCCEEEE
Confidence            378999999999999999999999999989999999999988762  22221     111   25999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCC
Q psy14540         79 CTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      |.+.|..|.....+.|.|...+
T Consensus        79 C~a~n~~g~~~~~~~l~V~~~~  100 (118)
T 2eo9_A           79 CIASTPSGEATWSAYIEVQEFG  100 (118)
T ss_dssp             EEEECSSCEEEEECCEEEECCS
T ss_pred             EEEEcCCCcEEEEEEEEEEeCC
Confidence            9999999988888899998765

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.66  E-value=1.2e-15  Score=110.61  Aligned_cols=124  Identities=15%  Similarity=0.161  Sum_probs=83.5

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ..+.+|+.++|.|.+ . .+.+.+.|+|+|..+............                                   
T Consensus        17 ~~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~~~~~-----------------------------------   59 (201)
T 1nkr_A           17 PLVKSEETVILQCWS-D-VMFEHFLLHREGMFNDTLRLIGEHHDG-----------------------------------   59 (201)
T ss_dssp             SEEETTCCEEEEEEE-S-SCCSEEEEEEESSSCEEEEEECEEETT-----------------------------------
T ss_pred             CccCCCCcEEEEEec-c-CCCCEEEEEECCCcCCcceeeeecCCC-----------------------------------
Confidence            567899999999998 3 467899999998655321000000000                                   


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCC-----ccCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCC
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTV-----ASDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGD  267 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-----~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~  267 (291)
                          .....|.|.++..+|+|.|+|.+.+..     ...+..+.|.|..   +|.+...+...+.+|+.++|.|.+ .+ 
T Consensus        60 ----~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~-~~-  133 (201)
T 1nkr_A           60 ----VSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSS-RS-  133 (201)
T ss_dssp             ----EEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEE-SS-
T ss_pred             ----CceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeC-CC-
Confidence                013457777777888888888886542     2345566777764   345544444448999999999999 55 


Q ss_pred             CCceEEEEECCEEcc
Q psy14540        268 LPLSLQWYKNGLAIS  282 (291)
Q Consensus       268 p~~~v~W~~~~~~l~  282 (291)
                      +.+.+.|+|+|..+.
T Consensus       134 ~~~~~~w~k~g~~~~  148 (201)
T 1nkr_A          134 SYDMYHLSREGEAHE  148 (201)
T ss_dssp             CCSEEEEEETTCSSC
T ss_pred             CCceEEEEECCcccC
Confidence            567899999998774

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.66  E-value=7.3e-15  Score=104.03  Aligned_cols=131  Identities=11%  Similarity=0.089  Sum_probs=90.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +-.+.+.|....|.+|+++.|+|.........+.|.-.-.     ....     ..+.....+.|.+++ +|.+.|.|.+
T Consensus         2 ~f~v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~-----~~~~-----~~g~~~~~~~ls~vs-~d~~~~~C~~   70 (196)
T 3bn3_B            2 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLR-----RNGT-----QRGLRWLARQLVDIR-EPETQPVCFF   70 (196)
T ss_dssp             CSCEEEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSE-----EEEE-----EEETTEEEEEEEEEC-SSEECCEEEE
T ss_pred             CcEEEEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccC-----CeeE-----ccccCceEEEEEEEc-cCCCceEEEE
Confidence            3456778888899999999999999643232577753211     0000     111222347899998 8888899998


Q ss_pred             eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce--eEEeECCEecc
Q psy14540         82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT--ISWLKNGLPIL  149 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--~~W~~~~~~~~  149 (291)
                      ........+.+.+.|+..|..+   . +..  ....+.+|+.++|.|.+.+++|...  |.|+++++.+.
T Consensus        71 ~c~~~~~~~~v~l~Vy~~P~~v---~-i~~--~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~  134 (196)
T 3bn3_B           71 RCARRTLQARGLIRTFQRPDRV---E-LMP--LPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELI  134 (196)
T ss_dssp             EETTEEEEEECEEEEEBCCCCC---E-ECC--CCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEE
T ss_pred             ECCCCceEEEEEEEEecCCCcC---E-Ecc--CCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEee
Confidence            7655567888899999877443   1 111  1123679999999999977788655  89999998874

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.66  E-value=1.2e-15  Score=113.62  Aligned_cols=145  Identities=17%  Similarity=0.278  Sum_probs=91.1

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +....+.+|+.++|.|.+ .+.|.+.+.|+++....  .........+  .       ......+               
T Consensus        31 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~--~~~~~~~~~~--~-------~~~~~~~---------------   83 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGK--APKLLIYSAS--F-------LYSGVPS---------------   83 (237)
T ss_dssp             CSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTS--CCEEEEETTT--E-------ECTTCCT---------------
T ss_pred             CCeEEEeCCCcEEEEEec-CCCCCceEEEEEECCCC--CCEEEEEecc--c-------cCCCCCC---------------
Confidence            345778899999999999 67788999999843110  0000000000  0       0000011               


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEe---cCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVN---VPPHIGPFTFGE-LMEGVRTQVACVVQSGD  267 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~---~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~  267 (291)
                      .+.+.......+|.|.++..+|+|.|.|.+.+..+. ......+.|.   .+|.+....... +..|+.++|+|.+.++.
T Consensus        84 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~  163 (237)
T 3sob_L           84 RFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFY  163 (237)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEB
T ss_pred             cEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccC
Confidence            112222334668999999999999999999876632 2334456663   345554433332 55688999999995546


Q ss_pred             C-CceEEEEECCEEccCC
Q psy14540        268 L-PLSLQWYKNGLAISQP  284 (291)
Q Consensus       268 p-~~~v~W~~~~~~l~~~  284 (291)
                      | .+.|.|++||..+..+
T Consensus       164 p~~~~v~W~k~g~~~~~~  181 (237)
T 3sob_L          164 PREAKVQWKVDNALQSGN  181 (237)
T ss_dssp             SSCCEEEEEETTEECCSS
T ss_pred             CCceEEEEEECCCCCCCc
Confidence            6 6899999999998753

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.65  E-value=9.1e-16  Score=116.19  Aligned_cols=180  Identities=23%  Similarity=0.382  Sum_probs=101.6

Q ss_pred             ecceeeeecCCcEEEEEEecC--CCCCeeEEEEC--CeecC------C-C--eeE----eceEE--eeccceEEEEEEee
Q psy14540          8 KFIQQTLQPGPPVSLKCIATG--NPTPHISWKLD--GYPLA------G-D--RFV----MGQYM--SLHGDVISHVNISS   68 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~--~~~~~------~-~--~~~----~~~~~--~~~~~~~~~l~i~~   68 (291)
                      .+....+.+|++++|.|.+.+  .....+.|++.  +....      . .  ...    ..+..  .......++|+|.+
T Consensus        29 q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  108 (267)
T 3u1s_H           29 QSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRG  108 (267)
T ss_dssp             ECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECS
T ss_pred             eeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECC
Confidence            344578999999999999964  33567999983  21110      0 0  000    01111  11223557899999


Q ss_pred             cCCCCCeEEEEEEeC-------CC------------C------ceeeeeeEEEEcC-CCCCcccceeccCCcceeecCCC
Q psy14540         69 VRVEDSGIYQCTATN-------RV------------G------SQTHSADMRVYDA-PGQPQDVKLVTSNSRSIKVHSGD  122 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~-------~~------------~------~~~~~~~l~v~~~-~~~~~~~~~~~~~~~~~~~~~g~  122 (291)
                      ++.+|+|.|.|.+.+       ..            .      .....+.+.|... +..|  ...... +. ....+|+
T Consensus       109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P--~v~~~~-~~-~~~~~g~  184 (267)
T 3u1s_H          109 LTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGP--SVFPLA-PS-SKSTSGG  184 (267)
T ss_dssp             CCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCC--EEEEEC-CC-GGGEETT
T ss_pred             CChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCC--EEEEec-CC-cccCCCC
Confidence            999999999999851       10            0      0112345666532 2111  111111 11 2235789


Q ss_pred             ceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEecc
Q psy14540        123 RAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY  201 (291)
Q Consensus       123 ~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~  201 (291)
                      .++|.|.+...+| .+.+.|  ++..+......              .....+..|.|.-                    
T Consensus       185 ~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~--------------~~~~~~~~g~y~~--------------------  228 (267)
T 3u1s_H          185 TAALGCLVKDYFPEPVTVSW--NSGALTSGVHT--------------FPAVLQSSGLYSL--------------------  228 (267)
T ss_dssp             EEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEE--------------CCCEECTTSCEEE--------------------
T ss_pred             cEEEEEEEeEEECCCeEEEE--CCcccCCCEEe--------------CCceECCCCCEEE--------------------
Confidence            9999999966566 568999  65544321100              0000122344533                    


Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVAS  228 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~  228 (291)
                      .+.|.|.....+| +.|+|.+.+....
T Consensus       229 ~s~L~i~~~~~~~-~~ytC~v~h~~~~  254 (267)
T 3u1s_H          229 SSVVTVPSSSLGT-QTYICNVNHKPSN  254 (267)
T ss_dssp             EEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred             EEEEEECchhcCC-CEEEEEEEECCCC
Confidence            2457777777777 8888888877644

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.65  E-value=3.1e-15  Score=96.93  Aligned_cols=96  Identities=10%  Similarity=0.219  Sum_probs=72.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCC---CeeEEEECCeecC----CCeeEeceEEee-ccceEEEEEEeecCCCC
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLA----GDRFVMGQYMSL-HGDVISHVNISSVRVED   73 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~----~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d   73 (291)
                      .|.|+..|..+.+.+|++++|.|.+.+.|.   +.|.|+|++....    ..++........ .....+.|.|.+++.+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            578999999999999999999999998887   8999999873211    112222111111 11235789999999999


Q ss_pred             CeEEEEEEeCCCCceeeeeeEEEE
Q psy14540         74 SGIYQCTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        74 ~G~y~C~~~~~~~~~~~~~~l~v~   97 (291)
                      +|.|+|.+.|..|.....+.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999998888888875

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=4.8e-16  Score=99.19  Aligned_cols=88  Identities=28%  Similarity=0.507  Sum_probs=73.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ||.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.......       ......|.|.+++.+|+|.|+|.+
T Consensus        11 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a   83 (99)
T 2yr3_A           11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC-------EAGVAELHIQDALPEDHGTYTCLA   83 (99)
T ss_dssp             EEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE-------ETTEEEEEECSCCTTCCBCEEEEE
T ss_pred             CCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe-------eCCeEEEEECCCChhhCEEEEEEE
Confidence            6888888888999999999999999988889999999998876332111       122467999999999999999999


Q ss_pred             eCCCCceeeeeeEEE
Q psy14540         82 TNRVGSQTHSADMRV   96 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v   96 (291)
                      .|..|.....+.|.|
T Consensus        84 ~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           84 ENALGQVSCSAWVTV   98 (99)
T ss_dssp             ECSSCEEEEECCEEE
T ss_pred             EECCCeEEEEEEEEE
Confidence            999988877777766

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=8.5e-16  Score=98.19  Aligned_cols=91  Identities=33%  Similarity=0.607  Sum_probs=75.4

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      .||.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  .++..      ...  .+|.|.+++..|+|.|+
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~------~~~--~~L~i~~v~~~d~G~Y~   78 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI------QEQ--GTLQIKNLRISDTGTYT   78 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE------CTT--CCEEEESCCTTTCCEEE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE------cCC--CEEEEccCCcccCEEEE
Confidence            378899899999999999999999999999999999999987762  22211      111  25999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcC
Q psy14540         79 CTATNRVGSQTHSADMRVYDA   99 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~   99 (291)
                      |.+.|..|.....+.|.|.+.
T Consensus        79 C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           79 CVATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             EEEECSSCCCBCCEEEEEESC
T ss_pred             EEEEcCCCCEEEEEEEEEecC
Confidence            999999998888888888754

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.65  E-value=4e-16  Score=100.65  Aligned_cols=91  Identities=24%  Similarity=0.405  Sum_probs=76.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+. ..++...     ......+|.|.+++..|+|.|+|.
T Consensus        14 ~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~   88 (106)
T 1nct_A           14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT-----TTKYKSTFEISSVQASDEGNYSVV   88 (106)
T ss_dssp             CCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEE-----ECSSEEEEEECCCCSSCCSEEEEC
T ss_pred             CCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEE-----ECCCEEEEEECcCCchhCEEEEEE
Confidence            6889999999999999999999999998999999999998876 3333321     122346799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEE
Q psy14540         81 ATNRVGSQTHSADMRVY   97 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~   97 (291)
                      +.|..|.....+.|.|.
T Consensus        89 a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           89 VENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CBCSSCBCCEEEEEEEC
T ss_pred             EEeCCCeEEEEEEEEEE
Confidence            99999988888877764

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.65  E-value=9.8e-16  Score=112.89  Aligned_cols=146  Identities=14%  Similarity=0.167  Sum_probs=90.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCC-----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP-----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      ...+.+.+|+.+.|.|.+ .+.|     ...+.|++++..+..........          ........+.+.....   
T Consensus         8 ~~~v~~~~G~~v~L~C~~-~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~----------~~~~~~~~~r~~~~~~---   73 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKF-PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDL----------KVQHSSYRQRARLLKD---   73 (222)
T ss_dssp             CSEEEEETTSCEEEEEEC-CCCSSCCTTTCEEEEEETTEEEEEEETTEECS----------SSSCGGGSSSEEECHH---
T ss_pred             CccEEEEcCCcEEEEeEe-cCCCCCCCccEEEEEEECCcEEEEEeCCcccc----------ccccccccCceEEccc---
Confidence            345678899999999998 4555     34899999874331100000000          0000000000000000   


Q ss_pred             CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcc-cccCCceEEEEEEeecC
Q psy14540        188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG-ELMEGVRTQVACVVQSG  266 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~g~~v~l~C~~~~~  266 (291)
                               .+.....+|.|.++..+|+|.|+|.+.+ .+.....+.|.|..+|........ .+.+|+.++|.|.+ .|
T Consensus        74 ---------~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~-~g  142 (222)
T 3sbw_C           74 ---------QLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA-EG  142 (222)
T ss_dssp             ---------HHTTTEEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEE-EE
T ss_pred             ---------cccCCEEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEe-cC
Confidence                     0011245788999999999999999998 555566778888877654433221 36899999999999 77


Q ss_pred             CCCceEEEEEC-CEEccC
Q psy14540        267 DLPLSLQWYKN-GLAISQ  283 (291)
Q Consensus       267 ~p~~~v~W~~~-~~~l~~  283 (291)
                      .|.|.|.|+++ |..+..
T Consensus       143 ~P~p~i~W~~~~g~~~~~  160 (222)
T 3sbw_C          143 YPKAEVIWTSSDHQVLSG  160 (222)
T ss_dssp             BSCCEEEEEETTCCEECC
T ss_pred             CCCCeEEEEECCCceecC
Confidence            99999999999 666544

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.65  E-value=4.9e-16  Score=114.88  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=58.5

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECC-E
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNG-L  279 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~-~  279 (291)
                      ..+|.|.++..+|+|.|+|.|.|..+.....+.+.+..+  +....... +.+|+.+.|.|.+.++.|+|+|+|++++ .
T Consensus        82 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~--~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~  159 (226)
T 4f80_A           82 KAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAAL--GSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE  159 (226)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBC--CCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSC
T ss_pred             eEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccc--eecccceeeeccCCceeeEEEeccCCCCCEEEEEECCce
Confidence            457889999999999999999998776655555544433  22232233 8899999999999555799999999965 4


Q ss_pred             EccC
Q psy14540        280 AISQ  283 (291)
Q Consensus       280 ~l~~  283 (291)
                      .++.
T Consensus       160 ~~~~  163 (226)
T 4f80_A          160 NIPT  163 (226)
T ss_dssp             BCCC
T ss_pred             EcCC
Confidence            4433

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.65  E-value=2.8e-15  Score=109.26  Aligned_cols=141  Identities=13%  Similarity=0.149  Sum_probs=93.5

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ..+.+|+.++|.|.. .+.+.+.+.|++++................ .   ...  .....|.+..              
T Consensus         9 ~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~-~---~~~--~~~~~~r~~~--------------   67 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHN-LPLALGAFAWYKGNTTAIDKEIARFVPNSN-M---NFT--GQAYSGREII--------------   67 (208)
T ss_dssp             SEEETTCCEEEEEEC-CCSSCSEEEEEESSCCCGGGEEEEEEGGGT-E---EEE--CTTCCSSEEE--------------
T ss_pred             ceeecCCcEEEEEeC-CCCCceEEEeccCCCCCccceEEEEecCCC-c---ccc--CccccceeEE--------------
Confidence            567899999999996 678888999998765332211111110000 0   000  0011111110              


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEEecC---CCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVNVP---PHIGPFTFGELMEGVRTQVACVVQSGDLPLS  271 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~  271 (291)
                          ..+.+|.|.++..+|+|.|+|.+.+.. +.....+.|.|..+   |.+...... +.+|+.+.|.|.+ .+.| +.
T Consensus        68 ----~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~-~~~p-p~  140 (208)
T 3r4d_A           68 ----YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLS-NDIG-AN  140 (208)
T ss_dssp             ----CTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEEC-SCTT-CE
T ss_pred             ----ecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEEC-CCCC-Cc
Confidence                124569999999999999999999885 56667778888765   333333333 8899999999999 7766 79


Q ss_pred             EEEEECCEEccCC
Q psy14540        272 LQWYKNGLAISQP  284 (291)
Q Consensus       272 v~W~~~~~~l~~~  284 (291)
                      +.|+++|..+...
T Consensus       141 i~W~~~g~~l~~~  153 (208)
T 3r4d_A          141 IQWLFNSQSLQLT  153 (208)
T ss_dssp             EEEEETTEECCCC
T ss_pred             eEEEECCEeCCCC
Confidence            9999999998643

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.64  E-value=1e-15  Score=113.79  Aligned_cols=146  Identities=14%  Similarity=0.209  Sum_probs=87.2

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      +....+.+|+.++|.|.+....+.+ .+.|++++....  ..            +.+.......           .+ ..
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~--~~------------~~~~~~~~~~-----------~~-~~   79 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTA--PK------------LLIYRNNQRP-----------SG-VP   79 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSC--CE------------EEEBTTTBCC-----------SS-SC
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCC--cE------------EEEECccccC-----------CC-cc
Confidence            4456788999999999984333344 799998632100  00            0000000000           00 00


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEEe
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACVV  263 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~~  263 (291)
                      ..+.+........|.|.++..+|+|.|.|.+.+..+   .......|.|.    .+|.+...+... ...|+.++|.|.+
T Consensus        80 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~  159 (234)
T 2j6e_L           80 DRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLI  159 (234)
T ss_dssp             TTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECC
T ss_pred             ccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEE
Confidence            111122223356788999999999999999988765   22333455553    356665533332 4568899999999


Q ss_pred             ecCCCC-ceEEEEECCEEccCC
Q psy14540        264 QSGDLP-LSLQWYKNGLAISQP  284 (291)
Q Consensus       264 ~~~~p~-~~v~W~~~~~~l~~~  284 (291)
                      .+.+|+ +.|.|+|||+.+..+
T Consensus       160 ~g~~p~~~~v~W~k~g~~l~~~  181 (234)
T 2j6e_L          160 SDFFPGAVTVAWKADGAPVKAG  181 (234)
T ss_dssp             CBCSSCCCEEEEEETTEECCSS
T ss_pred             EEEcCCceEEEEEECCEECCCC
Confidence            444554 499999999998654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.64  E-value=1e-16  Score=120.27  Aligned_cols=146  Identities=15%  Similarity=0.188  Sum_probs=89.8

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCce-----eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLT-----ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      +....+.+|+.++|.|.+ .+.|.+.     +.|++++......  .           +.+....    +...   .. .
T Consensus        10 p~~~~v~~G~~v~L~C~~-~g~p~~~~~~~~v~W~k~~~~~~~~--~-----------~~~~~~~----~~~~---~~-~   67 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNI-FYSQPLNITSMGITWFWKSLTFDKE--V-----------KVFEFFG----DHQE---AF-R   67 (248)
T ss_dssp             TSEEEEETTSCEEECCEE-EESSCCCTTSCEEEEEEECSSCCCE--E-----------EEEEEES----SCEE---ES-S
T ss_pred             CCCeEEeCCCCEEEeeEE-ecCCCcCCCceEEEEEEEcCCCCcc--e-----------EEEEecC----Cccc---cc-C
Confidence            345678899999999999 4666554     9999965332110  0           0000000    0000   00 0


Q ss_pred             CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCC
Q psy14540        188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGD  267 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~  267 (291)
                      +..... .-.......+|.|.++..+|+|.|+|.+.+..+.....+.|.|..+|.+...+...+..|+.++|.|.+.++.
T Consensus        68 ~~~~~~-~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~  146 (248)
T 3pv7_A           68 PGAIVS-PWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFY  146 (248)
T ss_dssp             TTCBCC-HHHHTTTBCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEB
T ss_pred             CceEEE-eccCCCCcEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEE
Confidence            000000 0001122456999999999999999999998877777888999988887776665567888999999994448


Q ss_pred             CCc-eEEEEECCEEc
Q psy14540        268 LPL-SLQWYKNGLAI  281 (291)
Q Consensus       268 p~~-~v~W~~~~~~l  281 (291)
                      |.+ .|.|++||.++
T Consensus       147 P~pi~v~W~k~g~~l  161 (248)
T 3pv7_A          147 PEAINITWEKQTQKF  161 (248)
T ss_dssp             SSCCEEEEEEECSSS
T ss_pred             CCCeEEEEEECCccC
Confidence            888 99999999644

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.64  E-value=1.5e-15  Score=113.70  Aligned_cols=151  Identities=15%  Similarity=0.221  Sum_probs=87.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.++|.|.+ .+.+.+.+.|++....  ...............  ..  ......+.|.-..         
T Consensus         8 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~--~~~~~~~~~~~~~~~--~~--~~~~~~~r~~~~~---------   71 (246)
T 4dzb_B            8 PSWVISKSGTSVKIECRS-LDFQATTMFWYRQFPK--QSLMLMATSNEGSKA--TY--EQGVEKDKFLINH---------   71 (246)
T ss_dssp             CSEEEEETTSCEEEEEEE-SSSCCCSEEEEEECTT--SCCEEEEEECTTSCC--EE--CTTCCGGGEEEEE---------
T ss_pred             CcEEEEeCCCcEEEEeEe-cCCCceEEEEEEECCC--CCcEEEEEEccCCCc--ee--cCcccCCcEEEEe---------
Confidence            345778899999999998 6778899999983210  000000000000000  00  0000112222111         


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc----cCCceeEEEEec------CCCCCCCCcc--cccCCceEEEE
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA----SDNHSSNLRVNV------PPHIGPFTFG--ELMEGVRTQVA  260 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~----~~~~~~~l~v~~------~p~~~~~~~~--~~~~g~~v~l~  260 (291)
                           -.....+|.|.++..+|+|.|.|.+.+..+    .......|.|..      +|.+......  .+.+|+.++|.
T Consensus        72 -----~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~  146 (246)
T 4dzb_B           72 -----ASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLV  146 (246)
T ss_dssp             -----EETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEE
T ss_pred             -----cCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEE
Confidence                 012356799999999999999999987542    222444566653      4444332222  26679999999


Q ss_pred             EEeecCCCCc-eEEEEECCEEccCC
Q psy14540        261 CVVQSGDLPL-SLQWYKNGLAISQP  284 (291)
Q Consensus       261 C~~~~~~p~~-~v~W~~~~~~l~~~  284 (291)
                      |.+.+.+|++ .|.|++||..|...
T Consensus       147 C~~~g~~p~~~~v~W~k~g~~l~~~  171 (246)
T 4dzb_B          147 CLATGFYPDHVELSWWVNGKEVHSG  171 (246)
T ss_dssp             EEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             EEEccCcCCceEEEEEECCEECCCC
Confidence            9993334433 99999999998653

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.64  E-value=1.3e-13  Score=119.04  Aligned_cols=228  Identities=14%  Similarity=0.177  Sum_probs=135.7

Q ss_pred             CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCC-CeEEEEEEeCCCCceeeeeeEE
Q psy14540         17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVED-SGIYQCTATNRVGSQTHSADMR   95 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~~~~~l~   95 (291)
                      +..+.|.|.+.+.|.+.+.|.++|..+..-..             ..+.|..+...+ ++.|.|.+.+..|..... .+.
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~-------------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~  156 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWNR-------------AELAISTFWPNFYQVIFEVITSGHQGYLAID-EVK  156 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCEE-------------EEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBE
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCceeE-------------EEEEEeecCCCceEEEEEEEecCCceEEEEe-eEE
Confidence            45789999999999999999999976542111             123344332222 367777655555543221 122


Q ss_pred             EEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeE-Ee--ECCEeccCCCceEEeccCCceEEEEEeeCC
Q psy14540         96 VYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTIS-WL--KNGLPILSDAEITIRSSGEYTSSLSIATLS  172 (291)
Q Consensus        96 v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  172 (291)
                      +...+... ... . ..+....+.+|+.++|.|.+ .|.|.+.+. |+  ++|..+..... ...........|.|..+.
T Consensus       157 ~~~~~~~~-~p~-~-~~~~~~~v~~G~~v~l~C~~-~g~P~p~i~~W~~~~~g~~l~~~~~-~~~~~~~~~~~l~I~~~~  231 (731)
T 2v5y_A          157 VLGHPCTR-TPH-F-LRIQNVEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDAPLKEI-KVTSSRRFIASFNVVNTT  231 (731)
T ss_dssp             EESSCCSS-SCE-E-CCCCCEEEETTSCEEEEEEE-ESCCCTTCEEEEEESSSCCEEEEEE-EECCSSEEEEEEEECSCC
T ss_pred             eeeccccc-ccc-c-ccccceEEeCCCcEEEEEEe-CCCCCCceeEEEecCCCccccccce-EEeccccceEEEEEcccc
Confidence            32221111 111 1 13345788999999999999 699988888 77  57766543221 111122235789999999


Q ss_pred             CCCceeEEEEEEecCCC-CCCceEEEEec---------------------------------------------------
Q psy14540        173 TGHSGNYTCVASNTVAS-DNHSSNLRVNE---------------------------------------------------  200 (291)
Q Consensus       173 ~~d~g~y~C~~~~~~~~-~~~~~~~~~~~---------------------------------------------------  200 (291)
                      ..|.|.|+|.|.|..|. ......+.+..                                                   
T Consensus       232 ~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~  311 (731)
T 2v5y_A          232 KRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQ  311 (731)
T ss_dssp             TTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEE
T ss_pred             cccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEe
Confidence            99999999999999886 44433333110                                                   


Q ss_pred             --cceEEEEeeeecCCCeeEEEEee--eCCccCCceeEEEEecCCCCCCC-Cccc---ccCCceEEEEEEe
Q psy14540        201 --YTSSLSIATLSTGHSGNYTCVAS--NTVASDNHSSNLRVNVPPHIGPF-TFGE---LMEGVRTQVACVV  263 (291)
Q Consensus       201 --~~~~l~i~~~~~~~~g~y~C~~~--~~~~~~~~~~~l~v~~~p~~~~~-~~~~---~~~g~~v~l~C~~  263 (291)
                        ....+.|.++.+.+.+.|+|.|.  |..|....+..+.+...+...+. +...   ......+.|....
T Consensus       312 ~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~  382 (731)
T 2v5y_A          312 PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEP  382 (731)
T ss_dssp             ECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEEC
T ss_pred             ccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEEC
Confidence              12455666777777788888888  88766554433444332221111 1111   2344567777765

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.64  E-value=7.6e-16  Score=114.10  Aligned_cols=133  Identities=18%  Similarity=0.320  Sum_probs=84.8

Q ss_pred             cceeecCCCceEEEEEeeCCCCC-c-eeEEeECCEec-cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPP-L-TISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~-~-~~~W~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ....+.+|+.++|.|.+...+|. + .+.|+++|..+ .......           .     ....|.|.-         
T Consensus        21 ~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~-----------~-----~~~~g~~~~---------   75 (231)
T 2w59_A           21 SPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVL-----------Q-----EHFNGTYSA---------   75 (231)
T ss_dssp             CHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEE-----------E-----ECTTSCEEE---------
T ss_pred             ChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccc-----------e-----ECCCCcEEE---------
Confidence            34556799999999999544574 4 99999988766 2111100           0     112234421         


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe------cCCCCCCCCcc-cccCCceEEEEEEe
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN------VPPHIGPFTFG-ELMEGVRTQVACVV  263 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~------~~p~~~~~~~~-~~~~g~~v~l~C~~  263 (291)
                                 ...|.|..+..+|+|.|+|.+.|..+..  .+.+.|.      .+|.+...... ....|+.++|.|.+
T Consensus        76 -----------~s~L~I~~~~~~D~g~Y~C~~~~~~~~~--~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~  142 (231)
T 2w59_A           76 -----------SSAVPVSTQDWLSGERFTCTVQHEELPL--PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLV  142 (231)
T ss_dssp             -----------EEEEECCHHHHHTTCCEEEEEECTTCSS--CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEE
T ss_pred             -----------EEEEEecchhccCCCEEEEEEEcCCCCC--ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEE
Confidence                       3468888888889999999999876543  3334443      24444332222 12235579999999


Q ss_pred             ecCCCC-ceEEEEECCEEccCC
Q psy14540        264 QSGDLP-LSLQWYKNGLAISQP  284 (291)
Q Consensus       264 ~~~~p~-~~v~W~~~~~~l~~~  284 (291)
                      .+.+|+ +.|.|+|||..|...
T Consensus       143 ~g~~P~~~~v~W~k~g~~l~~~  164 (231)
T 2w59_A          143 RGFRPRDIEIRWLRDHRAVPAT  164 (231)
T ss_dssp             EEEBSSCCEEEEEETTEECCGG
T ss_pred             EeccCCCcEEEEEECCEECCCc
Confidence            444553 799999999998544

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.8e-15  Score=98.04  Aligned_cols=98  Identities=15%  Similarity=0.246  Sum_probs=73.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCC---CCCeeEEEECCe-ecCC---CeeEeceEEe-eccceEEEEEEeecCCCC
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGY-PLAG---DRFVMGQYMS-LHGDVISHVNISSVRVED   73 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~-~~~~---~~~~~~~~~~-~~~~~~~~l~i~~~~~~d   73 (291)
                      ++.|+..|.++.|.+|++++|.|.+.+.   |.|.|.|||+.. .+..   .++.+..... ......++|+|.+++..|
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            3568888999999999999999999864   789999999742 1221   1222211111 111235789999999999


Q ss_pred             CeEEEEEEeCCCCceeeeeeEEEEcC
Q psy14540         74 SGIYQCTATNRVGSQTHSADMRVYDA   99 (291)
Q Consensus        74 ~G~y~C~~~~~~~~~~~~~~l~v~~~   99 (291)
                      +|.|+|++.+..+..+..+.|.|..+
T Consensus        92 ~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             CSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            99999999999999999999998763

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.63  E-value=3.2e-15  Score=112.36  Aligned_cols=145  Identities=14%  Similarity=0.208  Sum_probs=89.1

Q ss_pred             CcceeecCCCceEEEEEeeCCCC-----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP-----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      +..+.+.+|+.++|.|.+ .+.+     .+.+.|++++..-  ....            .+....     .      ...
T Consensus        41 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~~~--~~~~------------~~~~~~-----~------~~~   94 (252)
T 3bkj_L           41 PLSLPVNLGEQASISCRS-SQSIVHSNGHTYLEWYLQRPGQ--SPKL------------LIYQVS-----T------RFS   94 (252)
T ss_dssp             CSEEEECTTSCEEEEEEE-SSCCBCTTSCBCEEEEEECTTS--CCEE------------EEETTT-----E------ECT
T ss_pred             CceEEEeCCCcEEEEEEc-CCCccccCCCCcEEEEEECCCC--CcEE------------EEEcCC-----c------ccC
Confidence            345678899999999998 5666     5899999964210  0000            000000     0      000


Q ss_pred             CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEec---CCCCCCCCccc-ccCCceEEEEEE
Q psy14540        188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNV---PPHIGPFTFGE-LMEGVRTQVACV  262 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~-~~~g~~v~l~C~  262 (291)
                      + ....+.+........|.|.++..+|+|.|.|.+.+..+. ......|.|..   +|.+...+... +.+|+.++|.|.
T Consensus        95 ~-~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~  173 (252)
T 3bkj_L           95 G-VPDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCF  173 (252)
T ss_dssp             T-CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEE
T ss_pred             C-cCCceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEE
Confidence            0 001112222233557999999999999999999886532 22334566653   45554433222 457999999999


Q ss_pred             eecCCCCc-eEEEEECCEEccCC
Q psy14540        263 VQSGDLPL-SLQWYKNGLAISQP  284 (291)
Q Consensus       263 ~~~~~p~~-~v~W~~~~~~l~~~  284 (291)
                      +.+.+|++ +|.|+|||..+..+
T Consensus       174 ~~g~~p~~~~v~W~k~g~~~~~~  196 (252)
T 3bkj_L          174 LNNFYPKDINVKWKIDGSERQNG  196 (252)
T ss_dssp             EEEEBSSCCEEEEEETTEEECSS
T ss_pred             EeeEeCCCcEEEEEECCeecCCC
Confidence            94445654 89999999988654

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.62  E-value=1.6e-15  Score=106.77  Aligned_cols=129  Identities=13%  Similarity=0.102  Sum_probs=85.1

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      +.+.+|+.++|.|.+ .+ |.+.+.|++++..+...     . .+  .  ...                  .+....  .
T Consensus         5 v~~~~G~~VtL~c~~-~~-~~~~i~W~~~~~~i~~~-----~-~~--~--~~~------------------~~~~~~--R   52 (171)
T 1ccz_A            5 IYGVVYGNVTFHVPS-NV-PLKEVLWKKQKDKVAEL-----E-NS--E--FRA------------------FSSFKN--R   52 (171)
T ss_dssp             EEEETTCCEEECCCC-SS-CCSCEEEEETTEEEEEE-----E-TT--E--EEE------------------CGGGTT--S
T ss_pred             EEEEcCCCEEEcCCC-CC-CcceEEEEeCCcEEEEE-----c-CC--C--ccc------------------ccccCC--c
Confidence            567799999999998 44 78899999987632110     0 00  0  000                  000000  1


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceEEEE
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWY  275 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~  275 (291)
                      +.+.....+|.|.+++..|+|.|+|.+.+..+  ...+.|.|..++.....   ..... ..+|+|.+ .+.|.|.+.|+
T Consensus        53 ~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~--~~~~~L~V~~~~~~p~i---~~~~~-~~~L~C~~-~~~p~p~i~W~  125 (171)
T 1ccz_A           53 VYLDTVSGSLTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVSKPMI---YWECS-NATLTCEV-LEGTDVELKLY  125 (171)
T ss_dssp             EEECTTTCCEEECSCCGGGCEEEEEECTTCCS--CEEEEEEEECCCCCCEE---EEETT-TTEEEEEC-SSCSSCEEEEE
T ss_pred             EEEeCCCCeEEECCCChhhCceEEEEEeCCCC--cEEEEEEEECcCCCCEE---EEecC-CcEEEEEe-CCCCCcEEEEE
Confidence            11223456899999999999999999998777  67788888765432111   11111 13799999 77788999999


Q ss_pred             ECCEEccC
Q psy14540        276 KNGLAISQ  283 (291)
Q Consensus       276 ~~~~~l~~  283 (291)
                      +||..|..
T Consensus       126 ~~~~~l~~  133 (171)
T 1ccz_A          126 QGKEHLRS  133 (171)
T ss_dssp             ETTEEEEE
T ss_pred             ECCEECcC
Confidence            99998853

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=112.01  Aligned_cols=150  Identities=21%  Similarity=0.264  Sum_probs=91.4

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCc---eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPL---TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      +..+.+.+|+.++|.|.+ .+.|.+   .+.|++++..+............  .  ..+   .....+.+.+...     
T Consensus         6 p~~vtv~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~--~--~~~---~~~~~~r~~~~~~-----   72 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFY-RGDSGEQVGQVAWARVDAGEGAQELALLHSKY--G--LHV---SPAYEGRVEQPPP-----   72 (218)
T ss_dssp             CSEEEEETTSCEEECCEE-CCCTTCEEEEEEEEEECSSSCEEEEEEEETTT--E--EEE---CGGGTTTEECCSS-----
T ss_pred             CCeEEEEcCCCEEEEEEE-EcCCCCCccEEEEEECCCCCCceeEEEecCCC--C--eEe---CccccceEEEecc-----
Confidence            345788899999999999 566654   48999987654322111111000  0  000   0001111111000     


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCCCCc--ccccCCceEEEEEEeecC
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGPFTF--GELMEGVRTQVACVVQSG  266 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~--~~~~~g~~v~l~C~~~~~  266 (291)
                             .......+|.|.++..+|+|.|.|.+.+..+. ......+.+..++.......  ..+..|+.+.+.|.+ .+
T Consensus        73 -------~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-~g  144 (218)
T 4frw_A           73 -------PRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTA-EG  144 (218)
T ss_dssp             -------CCCTTBCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEE-EE
T ss_pred             -------cccCCeEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeec-cC
Confidence                   01112457899999999999999999876533 33334444444443332222  227889999999999 89


Q ss_pred             CCCceEEEEECCEEccC
Q psy14540        267 DLPLSLQWYKNGLAISQ  283 (291)
Q Consensus       267 ~p~~~v~W~~~~~~l~~  283 (291)
                      .|+|.|+|++++..+..
T Consensus       145 ~p~p~i~W~~~~~~~~~  161 (218)
T 4frw_A          145 SPAPSVTWDTEVKGTTS  161 (218)
T ss_dssp             BSCCEEEEEESSCCEEE
T ss_pred             CcCceEEEEECCccccc
Confidence            99999999999887753

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=3e-15  Score=96.14  Aligned_cols=91  Identities=18%  Similarity=0.373  Sum_probs=73.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...+....+.+|+++.|.|.+.+ +.+.+.|++++..+. ..++...     .....+.|.|.+++.+|+|.|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2edf_A            8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVV-----CEGTMAMLVIRGASLKDAGEYTCE   81 (103)
T ss_dssp             CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEE-----EETTEEEEEESSCCTTTCSEEEEE
T ss_pred             CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEE-----ECCCEEEEEECCCCcccCEEEEEE
Confidence            678888888999999999999999986 777899999998886 3333321     223357799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQ  102 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~  102 (291)
                      +.+    ....+.|.|...+..
T Consensus        82 a~n----~~~~~~l~V~~~p~~   99 (103)
T 2edf_A           82 VEA----SKSTASLHVEEKASG   99 (103)
T ss_dssp             CSS----CEEEEEEEECCCSSS
T ss_pred             Ecc----CCcEEEEEEeCCCCC
Confidence            987    466778888776643

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.62  E-value=1.6e-15  Score=111.56  Aligned_cols=146  Identities=14%  Similarity=0.260  Sum_probs=85.8

Q ss_pred             cceeecCCCceEEEEEeeCCCC--CceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ....+.+|+.++|.|.+ .+.+  .+.+.|++++  ..+.    ........... ...   .....+.|.-...     
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~----~~~~~~~~~~~-~~~---~~~~~~R~~~~~~-----   73 (219)
T 1c1e_H            8 GPELKKPGETVKISCKA-SGYMFTNYGMNWVKQAPGKALK----LMGWINPYTGE-STF---ADDFKGRFAFFLE-----   73 (219)
T ss_dssp             CCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEE----EEEEECSSSCC-EEE---CGGGCSSEEEEEE-----
T ss_pred             CCeEecCCCcEEEEEEE-eCcccccceEEEEEeCCCCCcE----EEEEEecCCCc-eEe---CcccCCcEEEEEe-----
Confidence            34678899999999999 4554  6789999963  2110    00000000000 000   0000111111100     


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc----cCCceeEEEEecC----CCCCCCC-cccccCCceEEEE
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA----SDNHSSNLRVNVP----PHIGPFT-FGELMEGVRTQVA  260 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~----~~~~~~~l~v~~~----p~~~~~~-~~~~~~g~~v~l~  260 (291)
                              ......+|.|.++..+|+|.|.|.+.+..+    .......|.|...    |.+.... ...+.+|+.++|.
T Consensus        74 --------~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~  145 (219)
T 1c1e_H           74 --------TSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLG  145 (219)
T ss_dssp             --------GGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEE
T ss_pred             --------cCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEE
Confidence                    012246788999999999999999988752    2233456666653    4333222 2236789999999


Q ss_pred             EEeecCCCCc-eEEEEECCEEc
Q psy14540        261 CVVQSGDLPL-SLQWYKNGLAI  281 (291)
Q Consensus       261 C~~~~~~p~~-~v~W~~~~~~l  281 (291)
                      |.+.++.|.| .|.|+++|..+
T Consensus       146 C~~~g~~P~p~~v~W~~~g~~~  167 (219)
T 1c1e_H          146 CLVKGYFPEPVTVTWNSGSLSS  167 (219)
T ss_dssp             EEEEEEBSSCCEEEEGGGTBCT
T ss_pred             EEcccccCCCeEEEEEeCCccc
Confidence            9994338888 99999999865

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.62  E-value=9.7e-15  Score=92.66  Aligned_cols=90  Identities=16%  Similarity=0.343  Sum_probs=73.1

Q ss_pred             cceeecceeeeecCCcEEEEEEecCC-CCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      .+...|.+..+.+|+++.|.|.+.+. |.+.+.|++++..+. ..++...     .....+.|.|.+++..|+|.|+|.+
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a   77 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEIT-----YEDGVAILYVKDITKLDDGTYRCKV   77 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEE-----EETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEE-----EcCCeEEEEEecCChhhCeEEEEEE
Confidence            34566778899999999999999986 889999999999887 3333321     1234567999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEc
Q psy14540         82 TNRVGSQTHSADMRVYD   98 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~   98 (291)
                      .|..|.....+.|.|.+
T Consensus        78 ~n~~g~~~~~~~l~V~~   94 (97)
T 2bk8_A           78 VNDYGEDSSYAELFVKG   94 (97)
T ss_dssp             ECSSCEEEEEEEEEETT
T ss_pred             ECCCCeEeEEEEEEEEe
Confidence            99999888888887754

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.62  E-value=8.2e-15  Score=94.06  Aligned_cols=90  Identities=18%  Similarity=0.221  Sum_probs=71.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-C--eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-D--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      |+.|...+.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. .  ++..     ........|.|.+++.+|+|.|+
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~   80 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRI-----RVEGKKHILIIEGATKADAAEYS   80 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEE-----EEETTEEEEEEEEECTTTCSEEE
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEE-----EEcCCEEEEEECCCCcccCEEEE
Confidence            345888888899999999999999976 6689999999998873 2  2222     22234567999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCC
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPG  101 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~  101 (291)
                      |.+.+    ......|.|...+.
T Consensus        81 C~a~n----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           81 VMTTG----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             EEETT----EEEEEEEEEECCCS
T ss_pred             EEECC----CcEEEEEEEeCCCC
Confidence            99975    56677888887653

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.62  E-value=1.6e-15  Score=95.91  Aligned_cols=86  Identities=23%  Similarity=0.388  Sum_probs=70.9

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .||.|...+....+.+|+.+.|.|.+.+.| +.+.|++++..+. ..++...         ...|.|.+++.+|+|.|+|
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C   77 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT---------GEEVEVRDSIPADSGLYAC   77 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC---------SSEEEESSCCGGGSEEEEE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe---------CCEEEECCCChHHCEEEEE
Confidence            367888889999999999999999999876 7999999998876 3333221         1359999999999999999


Q ss_pred             EEeCCCCceeeeeeEEE
Q psy14540         80 TATNRVGSQTHSADMRV   96 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v   96 (291)
                      .+.+..|.....+.|.|
T Consensus        78 ~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           78 VTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EeccCCCcEEEEEEEEE
Confidence            99998888777776665

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.61  E-value=7.9e-15  Score=109.15  Aligned_cols=121  Identities=13%  Similarity=0.169  Sum_probs=82.3

Q ss_pred             eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      .+.+|+.++|.|.+ .+ +...+.|+|++..+......  ....                                    
T Consensus        17 ~v~~G~~VtL~C~~-~~-~~~~~~w~k~g~~~~~~~~~--~~~~------------------------------------   56 (242)
T 1p6f_A           17 MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPK--PPER------------------------------------   56 (242)
T ss_dssp             EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCS--SCTT------------------------------------
T ss_pred             ccCCCCcEEEEEee-CC-CCcEEEEEECCCcccccccc--ccCC------------------------------------
Confidence            67899999999998 33 45689999998765310000  0000                                    


Q ss_pred             EEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540        197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLS  271 (291)
Q Consensus       197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~  271 (291)
                         .....|.|.++..+|+|.|+|.+.+..+  ..+..+.|.|..   +|.+...+...+.+|+.|+|.|.+ .+. .+.
T Consensus        57 ---~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~-~~~-~~~  131 (242)
T 1p6f_A           57 ---INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTA-TSM  131 (242)
T ss_dssp             ---CCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEEC-TTS-CSE
T ss_pred             ---cceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEec-CCC-CCE
Confidence               0134567777777888888888876542  345667777764   455554444448899999999998 554 459


Q ss_pred             EEEEECCEEcc
Q psy14540        272 LQWYKNGLAIS  282 (291)
Q Consensus       272 v~W~~~~~~l~  282 (291)
                      +.|+|+|..+.
T Consensus       132 ~~w~k~g~~~~  142 (242)
T 1p6f_A          132 FLLLKEGRSSH  142 (242)
T ss_dssp             EEEEECSSSCE
T ss_pred             EEEEECCCccC
Confidence            99999997664

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.61  E-value=9.8e-15  Score=93.53  Aligned_cols=86  Identities=16%  Similarity=0.317  Sum_probs=67.5

Q ss_pred             ecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeE-eceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeee
Q psy14540         15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFV-MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD   93 (291)
Q Consensus        15 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~   93 (291)
                      ..|+.+.|.|.+.|.|.+.++|+++|..+...... ..............|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~   93 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS   93 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence            46888999999999999999999999988743221 11111112233466999999999999999999999999999998


Q ss_pred             EEEEcCC
Q psy14540         94 MRVYDAP  100 (291)
Q Consensus        94 l~v~~~~  100 (291)
                      |.|...|
T Consensus        94 l~V~~~P  100 (103)
T 1wwb_X           94 AHFMGWP  100 (103)
T ss_dssp             ECCSCCC
T ss_pred             EEECCCC
Confidence            8887665

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=5.8e-15  Score=95.01  Aligned_cols=91  Identities=21%  Similarity=0.331  Sum_probs=71.5

Q ss_pred             CCcceeecce---eeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQ---QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~---~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      ||.++..|..   ..+.+|+.++|.|.+.+.+.+ +.|++++..+. ..++..     ........|.|.+++.+|+|.|
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y   80 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVV-----KMDGRKHRLILPEAKVQDSGEF   80 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEE-----EEETTEEEEEESSCCTTTCEEE
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEE-----EeCCCEEEEEECCCChhhCEEE
Confidence            6888888877   789999999999999988877 99999999887 333322     1223456799999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEEEcCCCC
Q psy14540         78 QCTATNRVGSQTHSADMRVYDAPGQ  102 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~~~~~  102 (291)
                      +|.+.+..    ..+.|.|..+|..
T Consensus        81 ~C~a~n~~----~~~~l~V~~~P~p  101 (104)
T 2e6p_A           81 ECRTEGVS----AFFGVTVQDPSGP  101 (104)
T ss_dssp             EEECSSCC----CCEEEEEECCCCS
T ss_pred             EEEECCce----EEEEEEEcCCCCC
Confidence            99998753    3667788776643

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.61  E-value=1.1e-14  Score=109.33  Aligned_cols=124  Identities=15%  Similarity=0.169  Sum_probs=82.1

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ..+.+|++++|.|.+ .+ +.+.+.|+|+|..+.............                                  
T Consensus        16 ~~V~~G~~VtL~C~~-~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~----------------------------------   59 (257)
T 1b6u_A           16 PLVKSEETVILQCWS-DV-RFQHFLLHREGKFKDTLHLIGEHHDGV----------------------------------   59 (257)
T ss_dssp             SEEESSCCEEEEEEE-SS-CCSEEEEEEESTTCEEEEEECBCCTTC----------------------------------
T ss_pred             CEecCCCCEEEEEec-CC-CCcEEEEEECCCCCCcceeeeeccCCC----------------------------------
Confidence            567899999999998 33 467899999886542110000000000                                  


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCC-----ccCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCC
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTV-----ASDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGD  267 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-----~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~  267 (291)
                           ....|.|.+++.+|+|.|+|.+.+..     ...+..+.|.|..   +|.+...+...+.+|+.++|.|.+ .+.
T Consensus        60 -----~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~-~~~  133 (257)
T 1b6u_A           60 -----SKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSS-RSS  133 (257)
T ss_dssp             -----EEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEEC-SSC
T ss_pred             -----ceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeC-CCC
Confidence                 13456677777777777888776532     2345666777764   355555554458999999999998 655


Q ss_pred             CCceEEEEECCEEcc
Q psy14540        268 LPLSLQWYKNGLAIS  282 (291)
Q Consensus       268 p~~~v~W~~~~~~l~  282 (291)
                      + +.|.|+|||..+.
T Consensus       134 ~-~~~~w~k~g~~~~  147 (257)
T 1b6u_A          134 Y-DMYHLSREGEAHE  147 (257)
T ss_dssp             C-SEEEEEETTSSCE
T ss_pred             C-cEEEEEECCcccC
Confidence            4 6899999998764

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.61  E-value=3.9e-15  Score=94.71  Aligned_cols=78  Identities=24%  Similarity=0.416  Sum_probs=50.6

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ..+....+.+|+.+.|.|.+ .|.|.|.+.|+++|..+....  ++.+...+ ....|.|.++..+|+|.|+|.|.|..|
T Consensus        10 ~~p~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G   87 (100)
T 3knb_A           10 ALPSDISIDEGKVLTVACAF-TGEPTPEVTWSCGGRKIHSQEQGRFHIENTD-DLTTLIIMDVQKQDGGLYTLSLGNEFG   87 (100)
T ss_dssp             CCCSEEEEETTSEEEEEEEE-EEESCCEEEEEETTEECCTTGGGTEEEEECS-SEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             eCCCcEEEeCCCeEEEEEEE-EEecCCEEEEEECceEeeeeccceeeeeccc-ceEEEEEcCCCccCCEEEEEEEEECCC
Confidence            44566789999999999999 699999999999999986543  23222221 233455555554454444444444444


Q ss_pred             CC
Q psy14540        189 SD  190 (291)
Q Consensus       189 ~~  190 (291)
                      ..
T Consensus        88 ~~   89 (100)
T 3knb_A           88 SD   89 (100)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.61  E-value=4.8e-15  Score=102.52  Aligned_cols=95  Identities=23%  Similarity=0.456  Sum_probs=78.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. .++..    .........|.|.+++..|+|.|+|.
T Consensus        41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~----~~~~~~~~~L~I~~v~~~D~G~Y~C~  116 (154)
T 1fhg_A           41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI----DYDEEGNCSLTISEVCGDDDAKYTCK  116 (154)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEE----EECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEE----EECCCCeEEEEECCCChhcCEEEEEE
Confidence            67888888889999999999999999988999999999998873 33322    11223457899999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +.|..|.....+.|.|...+
T Consensus       117 a~N~~G~~~~~~~l~V~~~p  136 (154)
T 1fhg_A          117 AVNSLGEATCTAELLVETMG  136 (154)
T ss_dssp             EEETTEEEEEEEEEEEECC-
T ss_pred             EEECCCeEEEEEEEEEeCcC
Confidence            99999988888899998766

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.61  E-value=1.3e-15  Score=98.76  Aligned_cols=92  Identities=30%  Similarity=0.524  Sum_probs=67.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .....     ..+  ...|.|.+++.+|+|.|+|.
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~-----~~~--~~~L~i~~v~~~D~G~Y~C~   82 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-----KDG--NRNLTIRRVRKEDEGLYTCQ   82 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEE-----ETT--TTEEEECSCCGGGCEEEEEE
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEE-----eCC--CcEEEEeecCcccCEEEEEE
Confidence            78888889999999999999999999888899999999987762 22211     111  24599999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +.|..|.....+.|.|...+
T Consensus        83 a~n~~g~~~~~~~l~V~~~~  102 (108)
T 3kvq_A           83 ACSVLGCAKVEAFFIIEGAQ  102 (108)
T ss_dssp             EC----CEEEEEEEEEEC--
T ss_pred             EEeCCCceEEEEEEEEeCCC
Confidence            99999999889999998765

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.61  E-value=3.9e-15  Score=105.62  Aligned_cols=130  Identities=15%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             cceeecCCCceEEEEEee-CCCCCceeEEeE--CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVT-KGDPPLTISWLK--NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~-~~~p~~~~~W~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+...+|+.++|.|... .+.+.+.+.|++  ++..+.....      +.  ...       ...+.|           
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~------~~--~~~-------~~~~R~-----------   60 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRK------EK--ETF-------KEKDTY-----------   60 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECG------GG--CEE-------ESCTTE-----------
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeC------cc--CCC-------CCCCeE-----------
Confidence            446777999999999542 235577999999  7765421000      00  000       000111           


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDL  268 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p  268 (291)
                          .  +. .+++|.|.+++.+|+|.|+|.+.|..+..  ...+.|.|..+...   +. ....+..++|+|.+ .+.|
T Consensus        61 ----~--~~-~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~---P~-i~~~~~~v~L~C~~-~~~p  128 (182)
T 1hnf_A           61 ----K--LF-KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSK---PK-ISWTCINTTLTCEV-MNGT  128 (182)
T ss_dssp             ----E--EC-TTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCC---CE-EEEETTTTEEEEEC-SSCS
T ss_pred             ----E--EC-CCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCC---CE-EEEccCcEEEEeEc-cCCC
Confidence                1  11 24579999999999999999999877654  34567777653211   11 11133479999999 7778


Q ss_pred             CceEEEEECCEEc
Q psy14540        269 PLSLQWYKNGLAI  281 (291)
Q Consensus       269 ~~~v~W~~~~~~l  281 (291)
                      ++.|.|++||..|
T Consensus       129 ~~~~~W~~~g~~l  141 (182)
T 1hnf_A          129 DPELNLYQDGKHL  141 (182)
T ss_dssp             SCEEEEEESSCEE
T ss_pred             CCEEEEEECCEEC
Confidence            8999999999988

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.61  E-value=1.2e-14  Score=92.75  Aligned_cols=89  Identities=17%  Similarity=0.314  Sum_probs=71.0

Q ss_pred             CCcceeecce-eeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +|.|...+.+ ..+.+|+++.|.|.+. .|.+.+.|++++..+. ..++..     ........|.|.+++.+|+|.|+|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C   80 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIF-----EHKGCQRILFINNCQMTDDSEYYV   80 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEE-----EEETTEEEEEEEEECTTTCCEEEE
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEE-----EecCCEEEEEEcCCCcCcCEEEEE
Confidence            7888888876 5789999999999998 6888999999998876 333332     123334679999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEcCC
Q psy14540         80 TATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      .+    +.......|.|..+|
T Consensus        81 ~a----g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           81 TA----GDEKCSTELFVRSGP   97 (100)
T ss_dssp             EE----TTEEEEEEEEECCSC
T ss_pred             EE----CCceEEEEEEEecCC
Confidence            99    566777788887654

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.61  E-value=4.9e-15  Score=90.69  Aligned_cols=80  Identities=23%  Similarity=0.375  Sum_probs=61.7

Q ss_pred             cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      ..++.+.+|+.+.|.|.+.+ |.+.+.|+|||..+. ..++.+     ......++|.|.+++.+|+|.|+|.+.+    
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----   72 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQL-----EQAGARQVLRVQGARSGDAGEYLCDAPQ----   72 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEE-----EECSSCEEEEESSCSSTTCEEEEEECTT----
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEE-----eecCCeEEEEecCCCCcccEEEEEEECC----
Confidence            34678899999999999865 888999999999987 344333     2234457799999999999999998843    


Q ss_pred             eeeeeeEEEEc
Q psy14540         88 QTHSADMRVYD   98 (291)
Q Consensus        88 ~~~~~~l~v~~   98 (291)
                      ....+.|.|.+
T Consensus        73 ~~~~a~l~V~e   83 (84)
T 2lu7_A           73 DSRIFLVSVEE   83 (84)
T ss_dssp             TCEEEEEEECC
T ss_pred             EEEEEEEEEEC
Confidence            45566677653

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.61  E-value=4.7e-14  Score=110.29  Aligned_cols=132  Identities=17%  Similarity=0.223  Sum_probs=85.4

Q ss_pred             ecceeeeecCCcEEEEEEecCCC--------------CCeeEEEEC--Ce--ecC---CCe------eEec-e-EEee--
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNP--------------TPHISWKLD--GY--PLA---GDR------FVMG-Q-YMSL--   56 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~--------------~~~v~W~~~--~~--~~~---~~~------~~~~-~-~~~~--   56 (291)
                      .+..+.+.+|++++|.|.+...+              ...+.||+.  |+  .+.   .+.      +... . +...  
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            44567889999999999986422              356999972  32  111   110      0000 0 1000  


Q ss_pred             -----ccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCC-ceEEEEEe
Q psy14540         57 -----HGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD-RAGVQCLV  130 (291)
Q Consensus        57 -----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~  130 (291)
                           ...+.++|.|.+++.+|+|.|.|.+.+..+.....+.|.|...|.     ... .......+..|+ .++|.|.+
T Consensus       244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~-----V~v-~p~~~~~~~~G~~~vtL~C~a  317 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPK-----VSL-MPATLARAAPGEAPPELLCLV  317 (401)
T ss_dssp             CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCE-----EEE-ESSSCCCCCTTCCCCCEEEEE
T ss_pred             cccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCe-----Eee-ccCcceeecCCCccEEEEEEe
Confidence                 123568899999999999999999987766666777888876541     111 111112234676 79999999


Q ss_pred             eCCCCC--ceeEEe-ECC
Q psy14540        131 TKGDPP--LTISWL-KNG  145 (291)
Q Consensus       131 ~~~~p~--~~~~W~-~~~  145 (291)
                      ...+|.  +.+.|+ +++
T Consensus       318 ~GfyP~~~~~VtW~~rdg  335 (401)
T 3f8u_B          318 SHFYPSGGLEVEWELRGG  335 (401)
T ss_dssp             EEEBSSTTCEEEEEEESS
T ss_pred             cCCcCCCCcEEEEEecCC
Confidence            766776  799995 765

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.61  E-value=1.3e-15  Score=113.28  Aligned_cols=131  Identities=15%  Similarity=0.258  Sum_probs=84.9

Q ss_pred             ecCCCceEEEEEeeCCC--CCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        118 VHSGDRAGVQCLVTKGD--PPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~~--p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      +.+|+.++|.|.+.+..  |.+ .+.|++++..+......               .......|.|.-             
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~---------------~~~~~~~~~~~~-------------   80 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTH---------------APEKQSNSTLRS-------------   80 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEEC---------------CCEECTTSCEEE-------------
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccc---------------cceEcCCCcEEE-------------
Confidence            67999999999995332  765 89999988665321000               000012233321             


Q ss_pred             EEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEE----EEecCCCCCCCCccc-ccCCceEEEEEEeecCCCC
Q psy14540        195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL----RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP  269 (291)
Q Consensus       195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~  269 (291)
                             ...|.|..+..+|+|.|.|.+.+..+.......+    .+..+|.+...+... ...|+.++|.|.+.+.+|+
T Consensus        81 -------~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~  153 (239)
T 1i1c_A           81 -------VSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPP  153 (239)
T ss_dssp             -------EEEEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS
T ss_pred             -------EEEEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECC
Confidence                   3468888888899999999999887654332222    233456554443332 3458899999999444665


Q ss_pred             -ceEEEEECCEEccC
Q psy14540        270 -LSLQWYKNGLAISQ  283 (291)
Q Consensus       270 -~~v~W~~~~~~l~~  283 (291)
                       ..|.|+|||.++.+
T Consensus       154 ~~~v~W~k~g~~l~~  168 (239)
T 1i1c_A          154 DIYTEWKMNGQPQEN  168 (239)
T ss_dssp             CCEEEEEETTEECSS
T ss_pred             CeEEEEEECCEECCC
Confidence             58999999998854

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.61  E-value=9e-15  Score=110.95  Aligned_cols=148  Identities=18%  Similarity=0.291  Sum_probs=87.3

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+..+.+.+|+.++|.|.+.  .+.+.+.|++....  ............  ..  ...... ..+.|            
T Consensus        32 ~p~~v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~--~~~~~~~~~~~~--~~--~~~~~~-~~~R~------------   90 (268)
T 3pl6_D           32 TPSNKVTEKGKYVELRCDPI--SGHTALYWYRQSLG--QGPEFLIYFQGT--GA--ADDSGL-PNDRF------------   90 (268)
T ss_dssp             CCSEEEEETTCCEEEEEBCB--TTCCEEEEEEECTT--SCCEEEEEEETT--EE--EECTTC-CSTTE------------
T ss_pred             CCCEEEecCCCCEEEEEEeC--CCCceEEEEEECCC--CCcEEEEEECCC--Cc--cccCCC-ccCcE------------
Confidence            34557788999999999983  57789999983210  000000000000  00  000000 00111            


Q ss_pred             CceEEEE-eccceEEEEeeeecCCCeeEEEEeeeC--CccCCceeEEEEec------CCCCCCCCccc--ccCCceEEEE
Q psy14540        192 HSSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNT--VASDNHSSNLRVNV------PPHIGPFTFGE--LMEGVRTQVA  260 (291)
Q Consensus       192 ~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~--~~~~~~~~~l~v~~------~p~~~~~~~~~--~~~g~~v~l~  260 (291)
                         .+.. ......|.|.+++.+|+|.|.|.+.+.  .........|.|..      +|.+.......  +.+|+.++|.
T Consensus        91 ---~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~  167 (268)
T 3pl6_D           91 ---FAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLV  167 (268)
T ss_dssp             ---EEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEE
T ss_pred             ---EEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEE
Confidence               1111 122567999999999999999999874  23334445666664      44433322222  6679999999


Q ss_pred             EEeecCCCCc-eEEEEECCEEccC
Q psy14540        261 CVVQSGDLPL-SLQWYKNGLAISQ  283 (291)
Q Consensus       261 C~~~~~~p~~-~v~W~~~~~~l~~  283 (291)
                      |.+.+.+|++ .|.|++||..+..
T Consensus       168 C~~~g~~p~~~~v~W~~~g~~l~~  191 (268)
T 3pl6_D          168 CLATGFYPDHVELSWWVNGKEVHS  191 (268)
T ss_dssp             EEEEEEBSSCEEEEEEESSSEECT
T ss_pred             EEECcccCCCeEEEEEECCEECCC
Confidence            9994445544 9999999998854

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.60  E-value=4.4e-15  Score=92.39  Aligned_cols=76  Identities=17%  Similarity=0.274  Sum_probs=57.2

Q ss_pred             CCcceeeccee--eeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQ--TLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~--~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      ||.|...+.+.  .+.+|+.+.|.|.+.+ |.+.+.|+|||..+. ..++.+     ...+..++|.|.+++.+|+|.|+
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i-----~~~~~~~~L~I~~v~~~D~G~Y~   77 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVL-----ENEGPHRRLVLPATQPSDGGEFQ   77 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEE-----EEETTEEEEEESSCCGGGCSEEE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeE-----EecCCeEEEEeCCCChhhcEEEE
Confidence            45555544444  4468999999999865 778899999999887 344333     22334577999999999999999


Q ss_pred             EEEeC
Q psy14540         79 CTATN   83 (291)
Q Consensus        79 C~~~~   83 (291)
                      |.+.+
T Consensus        78 C~a~n   82 (91)
T 2lvc_A           78 CVAGD   82 (91)
T ss_dssp             EECSS
T ss_pred             EEEcc
Confidence            99854

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=5.7e-15  Score=94.77  Aligned_cols=90  Identities=14%  Similarity=0.255  Sum_probs=71.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCC-CeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.|...+.+..+.+|++++|.|.+.+.+. +.+.|+|+|..+. ..++.+     ......++|.|.+++.+|+|.|+|
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C   82 (104)
T 2eny_A            8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQA-----TRQGRKYILVVREAAPSDAGEVVF   82 (104)
T ss_dssp             CCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEE-----EEETTEEEEEECSCCTTTCSCEEE
T ss_pred             CCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEE-----EEcCCEEEEEECCCCHHHCEEEEE
Confidence            568888899999999999999999988664 4799999999887 334332     122335679999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEcCC
Q psy14540         80 TATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      .+.    .......|.|..+|
T Consensus        83 ~a~----~~~~~a~L~V~~~p   99 (104)
T 2eny_A           83 SVR----GLTSKASLIVRERS   99 (104)
T ss_dssp             EET----TEEEEECEEEECCC
T ss_pred             EEC----CeeEEEEEEEeCCC
Confidence            884    35677888888766

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.60  E-value=1.7e-15  Score=110.87  Aligned_cols=124  Identities=15%  Similarity=0.157  Sum_probs=75.4

Q ss_pred             CcceeecCC--CceEEEEEeeCCCCCceeEEeEC---CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        113 SRSIKVHSG--DRAGVQCLVTKGDPPLTISWLKN---GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       113 ~~~~~~~~g--~~~~l~C~~~~~~p~~~~~W~~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      +..+.+.+|  +.+.|.|.+ .+ |.+.+.|+++   +..+..........                             
T Consensus        14 p~~v~v~eG~~~~v~L~C~~-~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~-----------------------------   62 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRFVPDGNRISWDS-----------------------------   62 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCB-SS-TTCCEEEEEETTTEEECCCSSSCEEET-----------------------------
T ss_pred             ceEEEEecCCCccEEEeecc-CC-CCcEEEEEhhcCCCccccCCCcccccC-----------------------------
Confidence            456788899  999999998 45 6789999884   55554332222111                             


Q ss_pred             CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEec--CCCCCCCC-cc-cccCCceEEEEEE
Q psy14540        188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNV--PPHIGPFT-FG-ELMEGVRTQVACV  262 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~--~p~~~~~~-~~-~~~~g~~v~l~C~  262 (291)
                                    ...|.|.++..+|+|.|+|.|.|..+. .+..+.|.|..  +|.+...+ .. .+.+|+.++|.|.
T Consensus        63 --------------~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~  128 (213)
T 2x1w_L           63 --------------KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT  128 (213)
T ss_dssp             --------------TTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEE
T ss_pred             --------------CccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEE
Confidence                          123555666666666666666653322 22234555532  22222222 22 3889999999999


Q ss_pred             eecCCC--CceEEEEECCEEcc
Q psy14540        263 VQSGDL--PLSLQWYKNGLAIS  282 (291)
Q Consensus       263 ~~~~~p--~~~v~W~~~~~~l~  282 (291)
                      + .+.|  ++.+.|+++|..+.
T Consensus       129 ~-~g~p~~~~~i~W~~~g~~~~  149 (213)
T 2x1w_L          129 A-RTELNVGIDFNWEYPSSKHQ  149 (213)
T ss_dssp             E-EECTTBCCEEEEECSCSSCC
T ss_pred             E-ECCCCCceEEEEEecCCccc
Confidence            9 6543  45899999988653

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=1.8e-14  Score=92.53  Aligned_cols=91  Identities=14%  Similarity=0.296  Sum_probs=73.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...+....+.+|++++|.|.+ +.+.+.+.|++++..+. ..++.+     ......+.|.|.+++.+|+|.|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQP-----SQEGLTLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEE-----EEETTEEEEEEESCCTTTCSEEEEE
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEE-----EeCCCEEEEEECCCCcccCEEEEEE
Confidence            7889999999999999999999994 67888999999998887 333333     2233456799999999999999998


Q ss_pred             EeCCCCceeeeeeEEEEcCCCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPGQ  102 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~  102 (291)
                          .+.....+.|.|...+..
T Consensus        82 ----~g~~~~~~~l~V~~~p~~   99 (103)
T 2dku_A           82 ----IGQAQSRAQLLVQGRRSG   99 (103)
T ss_dssp             ----CSSCBCCEEEEEECSCCC
T ss_pred             ----eCCceEEEEEEEeCccCC
Confidence                456666788888877644

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.60  E-value=1.4e-14  Score=108.33  Aligned_cols=147  Identities=16%  Similarity=0.231  Sum_probs=85.2

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.++|.| . .+.+.+.+.|++....  ..........+  ...+.  ..... .+.|.            
T Consensus         9 p~~v~v~~G~~v~L~C-~-~~~~~~~v~W~r~~~~--~~~~~~~~~~~--~~~~~--~~~~~-~~r~~------------   67 (245)
T 4ei6_B            9 PSHQIIDMGQMVTLNC-D-PVSNHLYFYWYKQILG--QQMEFLVNFYN--GKVME--KSKLF-KDQFS------------   67 (245)
T ss_dssp             CSEEEEETTCCEEEEE-E-CCTTCCEEEEEEEETT--TEEEEEEEEET--TEEEE--ECTTC-CTTEE------------
T ss_pred             CceEEecCCCCEEEEE-E-cCCCCCEEEEEEECCC--CCcEEEEEECC--Cceec--cCCCc-cCCEE------------
Confidence            3457788999999999 4 4778889999983110  00000000000  00000  00000 01111            


Q ss_pred             ceEEEE-eccceEEEEeeeecCCCeeEEEEeeeCC----ccCCceeEEEEec------CCCCCCCCcc--cccCCceEEE
Q psy14540        193 SSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNTV----ASDNHSSNLRVNV------PPHIGPFTFG--ELMEGVRTQV  259 (291)
Q Consensus       193 ~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~----~~~~~~~~l~v~~------~p~~~~~~~~--~~~~g~~v~l  259 (291)
                         +.. ......|.|.++..+|+|.|.|.+.+..    ........|.|..      +|.+......  .+.+|+.++|
T Consensus        68 ---~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l  144 (245)
T 4ei6_B           68 ---VERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATL  144 (245)
T ss_dssp             ---EECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred             ---EEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEE
Confidence               111 1224578999999999999999998532    2233444566653      4444332222  2667999999


Q ss_pred             EEEeecCCCCc-eEEEEECCEEccC
Q psy14540        260 ACVVQSGDLPL-SLQWYKNGLAISQ  283 (291)
Q Consensus       260 ~C~~~~~~p~~-~v~W~~~~~~l~~  283 (291)
                      .|.+.+..|++ .+.|++||..|..
T Consensus       145 ~C~~~g~~p~~~~v~W~~~g~~l~~  169 (245)
T 4ei6_B          145 VCLATGFYPDHVELSWWVNGKEVHS  169 (245)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             EEEEeeEeCCCeEEEEEECCEECCC
Confidence            99994446655 8999999999865

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.60  E-value=2.5e-15  Score=109.43  Aligned_cols=130  Identities=14%  Similarity=0.268  Sum_probs=77.9

Q ss_pred             cCCCceEEEEEeeCCCC---CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        119 HSGDRAGVQCLVTKGDP---PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      .+|+.++|.|.+.+..|   ...+.|++++.++......               .......|.|..              
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~---------------~~~~~~~g~~~~--------------   66 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK---------------PREEQYNSTYRV--------------   66 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEEC---------------CCEECTTSCEEE--------------
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccC---------------CceeccCCcEEE--------------
Confidence            68999999999953332   3599999999876432100               000011233321              


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEE----EEecCCCCCCCCccc-ccCCceEEEEEEeecCCCC-
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL----RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP-  269 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-  269 (291)
                            ...|.|...+.+|+|.|+|.|.|..+.......+    .+..+|.+...+... ...|+.++|.|.+.+.+|+ 
T Consensus        67 ------~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~  140 (207)
T 1l6x_A           67 ------VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSD  140 (207)
T ss_dssp             ------EEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSC
T ss_pred             ------EEEEEEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCC
Confidence                  1223344444556999999999877654333223    233456544433322 2346669999999444565 


Q ss_pred             ceEEEEECCEEccC
Q psy14540        270 LSLQWYKNGLAISQ  283 (291)
Q Consensus       270 ~~v~W~~~~~~l~~  283 (291)
                      +.|.|+|||.++..
T Consensus       141 ~~v~W~k~g~~~~~  154 (207)
T 1l6x_A          141 IAVEWESNGQPENN  154 (207)
T ss_dssp             CEEEEEETTEEECC
T ss_pred             eEEEEEECCeeccC
Confidence            49999999998853

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.60  E-value=4.5e-15  Score=107.71  Aligned_cols=55  Identities=20%  Similarity=0.329  Sum_probs=39.5

Q ss_pred             ecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEE
Q psy14540        118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS  184 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  184 (291)
                      +.+|+.++|.|.+    |.+.+.|+|+|..+....        .....|.|..+..+|+|.|+|.+.
T Consensus        15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~~~~--------~~~~~L~i~~v~~~DsG~Y~C~~~   69 (204)
T 1sy6_A           15 YQEDGSVLLTCDA----EAKNITWFKDGKMIGFLT--------EDKKKWNLGSNAKDPRGMYQCKGS   69 (204)
T ss_dssp             CCSSSEEEEEECS----CSSEEEEEETTEEEEEEE--------SSCCCEEEEEGGGCCEEEEEEESS
T ss_pred             ecCCCeEEEEEcC----CCCEEEEEECCEECCCCC--------CCCCeEEeCCCCcCCCEEEEEEec
Confidence            4589999999987    678999999998774320        013356777777777777777643

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=2e-15  Score=96.62  Aligned_cols=93  Identities=17%  Similarity=0.220  Sum_probs=69.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ||.|...+.+..+.+|+.+.|.|.+.+.+ +.+.|++++..+.........+..........|.|.+++.+|+|.|+|.+
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   86 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT   86 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEEC
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEE
Confidence            67888888889999999999999999877 89999999988773211000011123344577999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEcC
Q psy14540         82 TNRVGSQTHSADMRVYDA   99 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~   99 (291)
                      .+    ......|.|...
T Consensus        87 ~n----~~~~~~l~V~~~  100 (101)
T 2edk_A           87 NG----GQCEAELIVEEK  100 (101)
T ss_dssp             SS----CEECCBEEEECC
T ss_pred             cC----CcEEEEEEEeCC
Confidence            75    345556777654

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.59  E-value=1.2e-13  Score=96.86  Aligned_cols=128  Identities=15%  Similarity=0.231  Sum_probs=90.0

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCe-eEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      ..+.+.|....|..|+++.|+|+... +.+. +.|.-   .+.  +..     ...+..-..|.|.+++  |.|.|.|.+
T Consensus         3 f~v~v~P~~~~V~~G~S~~l~Cs~~c-~~p~~~glet---~l~--~~~-----~~~g~~w~~l~l~~vs--~~g~~~C~~   69 (192)
T 1zxq_A            3 FEVHVRPKKLAVEPKGSLEVNCSTTC-NQPEVGGLET---SLN--KIL-----LDEQAQWKHYLVSNIS--HDTVLQCHF   69 (192)
T ss_dssp             CCEEEESSEEEECTTEEEEEEEEESC-SSCSEEEEEC---SSE--EEE-----EEEETTEEEEEEEEEC--SCEEEEEEE
T ss_pred             cEEEEeCCCcEEeCCCcEEEEEECCC-CCcccccccc---ccC--ceE-----EcCCCCeEEEEEeccc--cCCeeEEEE
Confidence            45677888899999999999999864 3343 44432   111  110     1123333568999998  789999999


Q ss_pred             eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce--eEEeECCEecc
Q psy14540         82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT--ISWLKNGLPIL  149 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--~~W~~~~~~~~  149 (291)
                      ........+.+.++|+..|..+....      ....+.+|+.++|.|.+.+++|...  +.|+++++.+.
T Consensus        70 ~c~~~~~~~~~~itVy~~P~~v~i~~------~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~  133 (192)
T 1zxq_A           70 TCSGKQESMNSNVSVYQPPRQVILTL------QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLH  133 (192)
T ss_dssp             EETTEEEEEEEEEEECBCCCCCEEEE------ESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEE
T ss_pred             ECCCcceEEEEEEEEEeCCCCceEcc------CCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEee
Confidence            86555667888999998775441111      1135778999999999988888665  79999988774

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.59  E-value=1.5e-14  Score=108.28  Aligned_cols=144  Identities=16%  Similarity=0.255  Sum_probs=83.0

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ...+.+|+.++|.|.+ .+.|  .+.+.|+++...    ...          .+.+........ .      +.......
T Consensus        11 ~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~~----~~~----------~~~~~~~~~~~~-~------~~~~~~~~   68 (247)
T 2ghw_B           11 GGVVQPGKSLRLSCAA-SGFAFSSYAMHWVRQAPG----KGL----------EWVAVISYDGSN-K------YYADSVKG   68 (247)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTT----SCE----------EEEEEECTTSSC-E------EECTTTTT
T ss_pred             CEEEecCCcEEEEEEe-ccccCCCceEEEEEeCCC----Cce----------EEEEEEecCCCc-e------eeCccccC
Confidence            4678899999999998 5665  578999984311    000          000000000000 0      00000001


Q ss_pred             ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCC--ccCCceeEEEEecC---------------CCCCCCCccc-cc
Q psy14540        193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTV--ASDNHSSNLRVNVP---------------PHIGPFTFGE-LM  252 (291)
Q Consensus       193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~--~~~~~~~~l~v~~~---------------p~~~~~~~~~-~~  252 (291)
                      .+.+..  .....+|.|.++..+|+|.|.|.+.|..  ........|.|..+               +.+...+... +.
T Consensus        69 r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  148 (247)
T 2ghw_B           69 RFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLS  148 (247)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEEC
T ss_pred             cEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEec
Confidence            111111  1224568888888888888888888762  22233456666643               2232223233 88


Q ss_pred             CCceEEEEEEeecCCCCceEEEEE--CCEEc
Q psy14540        253 EGVRTQVACVVQSGDLPLSLQWYK--NGLAI  281 (291)
Q Consensus       253 ~g~~v~l~C~~~~~~p~~~v~W~~--~~~~l  281 (291)
                      +|+.++|.|.+ .+.|++.+.|+|  +|..+
T Consensus       149 ~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~  178 (247)
T 2ghw_B          149 PGERATLSCRA-SQSVRSNLAWYQQKPGQAP  178 (247)
T ss_dssp             TTSCEEEEEEE-SSCCTTCEEEEEECTTSCC
T ss_pred             CCCcEEEEEEe-CCCccceEEEEEECCCCCc
Confidence            99999999999 888888999999  55543

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.59  E-value=8.3e-15  Score=91.74  Aligned_cols=84  Identities=29%  Similarity=0.512  Sum_probs=69.4

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +++.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....             ..|.|.+++.+|+|.|+|.
T Consensus         2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-------------~~L~i~~v~~~d~G~Y~C~   68 (91)
T 3bfo_A            2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-------------KLYMVPYVDLEHQGTYWCH   68 (91)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS-------------SEEEESSCCGGGCEEEEEE
T ss_pred             CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC-------------CeEEECCCCHHhCEEEEEE
Confidence            467888999999999999999999999989999999999988763210             2588999999999999999


Q ss_pred             EeCCCCcee-eeeeEEEE
Q psy14540         81 ATNRVGSQT-HSADMRVY   97 (291)
Q Consensus        81 ~~~~~~~~~-~~~~l~v~   97 (291)
                      +.+..|... ..+.+.|.
T Consensus        69 a~n~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           69 VYNDRDSQDSKKVEIIID   86 (91)
T ss_dssp             EECSSCEEECCCEEEEEC
T ss_pred             EEcCCCCEEeeeEEEEEe
Confidence            998887533 44566654

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.59  E-value=1.6e-14  Score=92.70  Aligned_cols=89  Identities=24%  Similarity=0.502  Sum_probs=72.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...+....+.+|++++|.|.+.+.+.+ +.|++++..+. ..++..     ......+.|.|.+++.+|+|.|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2e7b_A            8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSL-----RQEGAMLELVVRNLRPQDSGRYSCS   81 (103)
T ss_dssp             CCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEE-----EECSSEEEEEECSCCTTTCCCEEEE
T ss_pred             CCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEE-----EEcCCEEEEEEccCCcccCEEEEEE
Confidence            7888888999999999999999999988878 99999998876 333333     2234457799999999999999998


Q ss_pred             EeCCCCceeeeeeEEEEcCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~  100 (291)
                          .+.....+.|.|...|
T Consensus        82 ----~g~~~~~~~l~V~~~p   97 (103)
T 2e7b_A           82 ----FGDQTTSATLTVTALP   97 (103)
T ss_dssp             ----CSSCBCCBCEEEECCC
T ss_pred             ----ECCcEEEEEEEEEecc
Confidence                3556667788887765

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.59  E-value=5.4e-16  Score=115.17  Aligned_cols=145  Identities=14%  Similarity=0.236  Sum_probs=69.4

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.++|.|.+ .+.|.+.+.|++++....  ..            +.+........           + ...
T Consensus        30 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~--~~------------~~~~~~~~~~~-----------~-~~~   82 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCIT-STDIDDDMNWYQQKPGEP--PR------------LLISDGNTLRP-----------G-VPS   82 (233)
T ss_dssp             CSBC-------CCEEEEE-EEEESSCEEEEEECTTSC--CE------------EEECTTSCBCT-----------T-SCT
T ss_pred             CCeEEEecCCCEEEEEec-CCcCCCeEEEEEECCCCC--cE------------EEEEcCCccCC-----------C-CCc
Confidence            344678899999999998 566677899998532100  00            00000000000           0 000


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEec---CCCCCCCCcc-cccCCceEEEEEEeecCC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNV---PPHIGPFTFG-ELMEGVRTQVACVVQSGD  267 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~-~~~~g~~v~l~C~~~~~~  267 (291)
                      .+.+.......+|.|.++..+|+|.|.|.+.+..+. ......|.|..   +|.+...+.. ...+|+.++|.|.+.+..
T Consensus        83 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~  162 (233)
T 3bqu_C           83 RFSSSGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFY  162 (233)
T ss_dssp             TCCCCEEEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEB
T ss_pred             cEEeeccCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEcccc
Confidence            000001122447889999999999999999876542 22233455553   4555443322 245799999999994445


Q ss_pred             CCc-eEEEEECCEEccCC
Q psy14540        268 LPL-SLQWYKNGLAISQP  284 (291)
Q Consensus       268 p~~-~v~W~~~~~~l~~~  284 (291)
                      |++ .|.|+|||.++..+
T Consensus       163 p~~~~v~W~k~g~~~~~~  180 (233)
T 3bqu_C          163 PKDINVKWKIDGSERQNG  180 (233)
T ss_dssp             SSCEEEEEEEC-----CC
T ss_pred             CCceEEEEEECCeeCCCC
Confidence            553 89999999988654

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.59  E-value=1.4e-14  Score=94.87  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEe-ec-cceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMS-LH-GDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      ||.|.+..    ...+..+.|.|.+.|.|.|.|+|+|||..+... +........ .. ......|.|.+++..|+|.|+
T Consensus         4 pP~I~l~~----~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Yt   79 (126)
T 1he7_A            4 PASVQLHT----AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT   79 (126)
T ss_dssp             CCCCCCCC----CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEE
T ss_pred             CCEEEccC----CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEE
Confidence            67763322    336789999999999999999999999998843 322211110 01 112467999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEEcCCC
Q psy14540         79 CTATNRVGSQTHSADMRVYDAPG  101 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~~~~~  101 (291)
                      |.+.|..|.....+.+.|...|.
T Consensus        80 C~A~N~~G~~~~t~~l~v~~~P~  102 (126)
T 1he7_A           80 LLAANPFGQASASIMAAFMDNPF  102 (126)
T ss_dssp             EEEEETTEEEEEEEEECCCSCTT
T ss_pred             EEEEECCCeEEEEEEEEEEcCCC
Confidence            99999999999888888887664

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.59  E-value=1.6e-14  Score=108.67  Aligned_cols=143  Identities=16%  Similarity=0.253  Sum_probs=87.7

Q ss_pred             cceeecCCCceEEEEEeeCCCC--CceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ....+.+|+.++|.|.+ .+.|  .+.+.|++++  ..+.                +.+..........+       ...
T Consensus         8 ~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~----------------~l~~~~~~~~~~~~-------~~~   63 (256)
T 1nqb_A            8 GAELVKPGASVKLSCKA-SGYTFTSYWMHWVKQRPGRGLE----------------WIGRIDPNSGGTKY-------NEK   63 (256)
T ss_dssp             CCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEEETTTEEE----------------EEEEECTTTCCEEE-------CGG
T ss_pred             CCeeecCCCcEEEEEEe-ccccCCCceEEEEEECCCCCcE----------------EEEEEecCCCceee-------Ccc
Confidence            34678899999999998 5664  6799999842  1110                00000000000000       000


Q ss_pred             CCCceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCcc-----CCceeEEEEecCCCCCCCCccc-ccCCceEEEEE
Q psy14540        190 DNHSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVAS-----DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVAC  261 (291)
Q Consensus       190 ~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-----~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C  261 (291)
                      ....+.+..  .....+|.|.++..+|+|.|.|.+.+..+.     ......|.|..+|.+...+... +.+|+.++|.|
T Consensus        64 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C  143 (256)
T 1nqb_A           64 FKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISC  143 (256)
T ss_dssp             GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEE
T ss_pred             cCCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEe
Confidence            001111111  122467899999999999999999987542     2234577777777665544443 89999999999


Q ss_pred             EeecCCCCc-----eEEEEE--CCEEc
Q psy14540        262 VVQSGDLPL-----SLQWYK--NGLAI  281 (291)
Q Consensus       262 ~~~~~~p~~-----~v~W~~--~~~~l  281 (291)
                      .+ .+.|++     .|.|+|  +|..+
T Consensus       144 ~~-~~~~~~~~~~~~v~W~k~~~g~~~  169 (256)
T 1nqb_A          144 RS-SQSIVHSNGNTYLEWYLQKPGQSP  169 (256)
T ss_dssp             EE-SSCCBCTTSCBCEEEEEECTTSCE
T ss_pred             Ee-cCcccccccceEEEEEEECCCCCc
Confidence            99 776654     999999  55543

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.58  E-value=3.9e-14  Score=91.79  Aligned_cols=94  Identities=19%  Similarity=0.270  Sum_probs=71.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCe-ecC-C-------CeeEeceEEeeccceEEEEEEeecCCC
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY-PLA-G-------DRFVMGQYMSLHGDVISHVNISSVRVE   72 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~-~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~   72 (291)
                      +|.+...+....+.+|++++|.|.+.+.+.+.+.|++++. .+. .       .++..    ........+|.|.+++.+
T Consensus         6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~----~~~~~~~~~L~I~~v~~~   81 (108)
T 3m45_A            6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL----VRASWHELSISVSDVSLS   81 (108)
T ss_dssp             --CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEE----EEESSSEEEEEECSCCGG
T ss_pred             CCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEE----eecCCCcEEEEECCCChh
Confidence            5788888999999999999999999998888999999775 221 1       12221    111224578999999999


Q ss_pred             CCeEEEEEEeCCCCceeeeeeEEEEcCC
Q psy14540         73 DSGIYQCTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        73 d~G~y~C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      |+|.|+|.+.+ .+.....+.|.|..+|
T Consensus        82 D~G~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           82 DEGQYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             GCEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             HCeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            99999999998 7778888888887643

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.58  E-value=8.4e-15  Score=94.56  Aligned_cols=90  Identities=18%  Similarity=0.331  Sum_probs=71.2

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .||.|...+.+..+.+|+++.|.|.+.+.+.+ +.|++++..+. ..++.+.     .......|.|.+++.+|+|.|+|
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C   80 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITIS-----HVGRFHKLVIDDVRPEDEGDYTF   80 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEE-----EETTEEEEEESSCCTTTCSCEEE
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEE-----EeCCEEEEEECCCCcCCCEEEEE
Confidence            37889999999999999999999999987766 99999998876 3333321     22334679999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEc
Q psy14540         80 TATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~   98 (291)
                      .+.|.  .......|.|..
T Consensus        81 ~a~n~--~~~~~~~l~V~~   97 (106)
T 2dlt_A           81 VPDGY--ALSLSAKLNFLE   97 (106)
T ss_dssp             EEETS--CCCCCBCEEEEC
T ss_pred             EEccC--CceEEEEEEEEE
Confidence            99976  444556666664

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.58  E-value=2.4e-14  Score=106.72  Aligned_cols=148  Identities=18%  Similarity=0.325  Sum_probs=86.2

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.++|.|.+ .+ +.+.+.|++....  ..........+  ....  ..  ....+.|.-..         
T Consensus         9 p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~--~~~~~~~~~~~--~~~~--~~--~~~~~r~~~~~---------   69 (240)
T 3q5y_A            9 PRHIIKEKGGRSVLTCIP-IS-GHSNVVWYQQTLG--KELKFLIQHYE--KVER--DK--GFLPSRFSVQQ---------   69 (240)
T ss_dssp             CSEEEEETTCCEEEEEEC-CT-TCCEEEEEEECTT--SCCEEEEEEET--TEEE--EE--CSCCTTEEEEE---------
T ss_pred             cceeeecCCCcEEEEEEe-CC-CCceEEEEEECCC--CCCEEEEEEcC--Cccc--cC--cccCCeEEEEe---------
Confidence            345778899999999998 44 7789999983211  00000000000  0000  00  00011121110         


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC---ccCCceeEEEEe------cCCCCCCCCcc--cccCCceEEEEE
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV---ASDNHSSNLRVN------VPPHIGPFTFG--ELMEGVRTQVAC  261 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~---~~~~~~~~l~v~------~~p~~~~~~~~--~~~~g~~v~l~C  261 (291)
                           -.....+|.|.++..+|+|.|.|.+.+..   ........|.|.      .+|.+......  .+..|+.++|.|
T Consensus        70 -----~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C  144 (240)
T 3q5y_A           70 -----FDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVC  144 (240)
T ss_dssp             -----CTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEE
T ss_pred             -----CCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEE
Confidence                 01235679999999999999999997321   223344456665      24444332222  266799999999


Q ss_pred             EeecCCCCc-eEEEEECCEEccCC
Q psy14540        262 VVQSGDLPL-SLQWYKNGLAISQP  284 (291)
Q Consensus       262 ~~~~~~p~~-~v~W~~~~~~l~~~  284 (291)
                      .+.+++|++ .+.|++||.+|...
T Consensus       145 ~~~g~~P~~~~v~W~~~g~~l~~~  168 (240)
T 3q5y_A          145 LARGFFPDHVELSWWVNGKEVHSG  168 (240)
T ss_dssp             EEEEEBSSCEEEEEEETTEEECTT
T ss_pred             EEeeEECCCeEEEEEECCEECcCc
Confidence            994446665 89999999998653

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.58  E-value=2.3e-14  Score=90.49  Aligned_cols=86  Identities=16%  Similarity=0.307  Sum_probs=67.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...|....+.+|+.+.|.|.+ +.+.+.+.|++++..+. ..++..     ........|.|.+++.+|+|.|+|.
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGL-----ATEGTRHTLTVREVGPADQGSYAVI   81 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEE-----EEETTEEEEEESSCCTTCCSEEEEE
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEE-----EEcCCEEEEEEcCCCcccCEEEEEE
Confidence            4678888899999999999999999 67888999999998876 333332     1223356799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEE
Q psy14540         81 ATNRVGSQTHSADMRVY   97 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~   97 (291)
                      +    +.......|.|.
T Consensus        82 a----g~~~~~~~l~V~   94 (95)
T 2k1m_A           82 A----GSSKVKFDLKVI   94 (95)
T ss_dssp             E----TTEEEEEEEEEE
T ss_pred             E----CCceEEEEEEEe
Confidence            9    445556666664

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=4.8e-14  Score=92.29  Aligned_cols=92  Identities=27%  Similarity=0.392  Sum_probs=68.7

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....++.+...                               
T Consensus        12 ~~~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~-------------------------------   59 (114)
T 2cqv_A           12 QFPEDQKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVENS-------------------------------   59 (114)
T ss_dssp             CCCCSEEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEEC-------------------------------
T ss_pred             eCCCCeEEeCCCeEEEEEEE-EcCCCCEEEEEECCEECcCCCCEEEEEc-------------------------------
Confidence            34556788999999999999 6899999999999988765544332211                               


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI  243 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~  243 (291)
                               .....|.|.++..+|+|.|+|.|.|..+.....+.|.|...|..
T Consensus        60 ---------~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~  103 (114)
T 2cqv_A           60 ---------ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP  103 (114)
T ss_dssp             ---------SSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSC
T ss_pred             ---------CCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCCC
Confidence                     11345777777788888888888888887777888888766543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.58  E-value=2.5e-14  Score=107.81  Aligned_cols=139  Identities=18%  Similarity=0.227  Sum_probs=81.6

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ..+.+|+.++|.|.+ .+.|  .+.+.|++++  ...    ...          +...   ......|     .  ....
T Consensus        10 ~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~----~~~----------~~~~---~~~~~~~-----~--~~~~   64 (257)
T 1f3r_B           10 GLVRPSETLSLTCTV-SGFSLTSFSVSWVRHPSGKGP----EWM----------GRMW---YDGYTAY-----N--SALK   64 (257)
T ss_dssp             SEECTTSEEEEEEEE-ESSCTTTSCCEEEEEETTSCC----EEE----------EEEC---SSSCEEE-----C--SSSS
T ss_pred             ccccCCceEEEEEEE-ecccCCCccEEEEEeCCCCCc----EEE----------EEEe---cCCceee-----C--cccC
Confidence            568899999999999 4654  6899999853  111    000          0000   0000000     0  0000


Q ss_pred             CceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCc---------cCCceeEEEEecCC---------------CCCC
Q psy14540        192 HSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVA---------SDNHSSNLRVNVPP---------------HIGP  245 (291)
Q Consensus       192 ~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---------~~~~~~~l~v~~~p---------------~~~~  245 (291)
                      ..+.+..  .....+|.|.++..+|+|.|.|.+.|..+         .......|.|..+|               .+..
T Consensus        65 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~  144 (257)
T 1f3r_B           65 SRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQ  144 (257)
T ss_dssp             TTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCE
T ss_pred             CcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEc
Confidence            1111111  12245788888888888888888887643         11234466676543               2333


Q ss_pred             CCccc-ccCCceEEEEEEeecCCCCceEEEEE--CCEE
Q psy14540        246 FTFGE-LMEGVRTQVACVVQSGDLPLSLQWYK--NGLA  280 (291)
Q Consensus       246 ~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~--~~~~  280 (291)
                      .+... +.+|+.++|.|.+ .+.|++.+.|+|  +|..
T Consensus       145 ~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~  181 (257)
T 1f3r_B          145 SPSLLSASVGDRVTLSCKG-SQNINNYLAWYQQKLGEA  181 (257)
T ss_dssp             ETSEECCCTTCCEEEEEEC-SSCCBTCEEEEEECTTSC
T ss_pred             cCCEEEEcCCCCEEEEEEE-CCcCCCcEEEEEECCCCC
Confidence            23233 8899999999999 888888999999  5553

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=6.1e-14  Score=90.24  Aligned_cols=89  Identities=15%  Similarity=0.229  Sum_probs=71.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-----------eeEeceEEeeccceEEEEEEeecC
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-----------RFVMGQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~i~~~~   70 (291)
                      +|.|...+.+..+.+|+.+.|.|.+.+  .+.+.|+|||..+...           ++.+     ..+...++|+|.+++
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i-----~~~g~~~~L~I~~v~   80 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRI-----EQKGLQHRLILHAVK   80 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEE-----CCBTTEEEEEEESCC
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEE-----EeCCcEEEEEECCCC
Confidence            568889999999999999999999986  7789999999999733           3333     233446789999999


Q ss_pred             CCCCeEEEEEEeCCCCceeeeeeEEEEcCC
Q psy14540         71 VEDSGIYQCTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        71 ~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      .+|+|.|+|...+   ....+..|.|...|
T Consensus        81 ~~D~G~Y~~~~~~---~~~ssA~L~V~~~p  107 (112)
T 2e6q_A           81 HQDSGALVGFSCP---GVQDSAALTIQESS  107 (112)
T ss_dssp             STTCSEEEEEEET---TEEEEEEEEEECSS
T ss_pred             HHHCccEEEEEEC---CeeEEEEEEEeCCC
Confidence            9999999885542   34567889998765

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.58  E-value=3e-14  Score=104.27  Aligned_cols=145  Identities=23%  Similarity=0.406  Sum_probs=87.7

Q ss_pred             CcceeecCCCceEEEEEeeCC------CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKG------DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~------~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      +..+.+.+|+.++|.|.+...      .+.+.+.|++++............ ...       ........+.+.-..   
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~-~~~-------~~~~~~~~~r~~~~~---   75 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATN-NPD-------RRVKPETQGRFRLLG---   75 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEES-CTT-------SCBCTTTTTTEEECS---
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecC-Ccc-------cccCccccCceEEec---
Confidence            345778899999999998532      257899999987532111000000 000       000001111111000   


Q ss_pred             CCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc----CCceeEEEEecC---CCCCCCCcccccCCceEEE
Q psy14540        187 VASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS----DNHSSNLRVNVP---PHIGPFTFGELMEGVRTQV  259 (291)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~----~~~~~~l~v~~~---p~~~~~~~~~~~~g~~v~l  259 (291)
                                .......+|.|.++..+|+|.|.|.+.+..+.    ....+.|.|..+   |.+...  ..+.+|+.++|
T Consensus        76 ----------~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~--~~~~~G~~v~L  143 (214)
T 2zg1_A           76 ----------DVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL--EPLESGRPTRL  143 (214)
T ss_dssp             ----------CGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC----CCCCTTCCEEE
T ss_pred             ----------cCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC--ccccCCCeEEE
Confidence                      00112457999999999999999999887521    235677888764   344332  12779999999


Q ss_pred             EEEeecC----CCCceEEEEECCEEc
Q psy14540        260 ACVVQSG----DLPLSLQWYKNGLAI  281 (291)
Q Consensus       260 ~C~~~~~----~p~~~v~W~~~~~~l  281 (291)
                      .|.+ .+    .|+|.+.|++++..+
T Consensus       144 ~C~~-~~~~~~~p~p~v~W~~~~~~~  168 (214)
T 2zg1_A          144 SCSL-PGSCEAGPPLTFSWTGNALSP  168 (214)
T ss_dssp             EEEC-TTCCSCSSCCEEEEESSTTSS
T ss_pred             EEEe-ccCCCCCCCceEEEeCCCCcc
Confidence            9999 54    478999999998654

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.58  E-value=6.3e-15  Score=107.60  Aligned_cols=142  Identities=15%  Similarity=0.233  Sum_probs=84.4

Q ss_pred             cceeecCCCceEEEEEeeCCCC--CceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ....+.+|+.++|.|.+ .+.+  .+.+.|++++  ...                .+.+.... .....+     .. . 
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~----------------~~~~~~~~-~~~~~~-----~~-~-   62 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSV-TGDSITSDYWSWIRKFPGNRL----------------EYMGYVSY-SGSTYY-----NP-S-   62 (210)
T ss_dssp             SCSEECTTSCEEEEEEE-ESSCGGGSCEEEEEEETTTEE----------------EEEEEECT-TSCEEE-----CG-G-
T ss_pred             CCEEecCCCcEEEEEEE-ecccCCCCcEEEEEeCCCCCc----------------EEEEEEcC-CCCeEE-----Cc-c-
Confidence            34578899999999999 4554  4789999853  111                00000000 000000     00 0 


Q ss_pred             CCCceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec----CCCCCCCC-cccccCCceEEEEEE
Q psy14540        190 DNHSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVACV  262 (291)
Q Consensus       190 ~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C~  262 (291)
                      ....+.+..  .....+|.|.++..+|+|.|.|.+.+.. .......|.|..    +|.+...+ ...+.+|+.++|.|.
T Consensus        63 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~  141 (210)
T 3d9a_H           63 LKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCL  141 (210)
T ss_dssp             GTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEE
T ss_pred             cCceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEE
Confidence            001111211  1124579999999999999999998864 222335666653    34443322 223679999999999


Q ss_pred             eecCCCCc-eEEEEECCEEc
Q psy14540        263 VQSGDLPL-SLQWYKNGLAI  281 (291)
Q Consensus       263 ~~~~~p~~-~v~W~~~~~~l  281 (291)
                      +.+..|.| .|.|+++|..+
T Consensus       142 ~~g~~P~p~~v~W~~~~~~~  161 (210)
T 3d9a_H          142 VKGYFPEPVTVTWNSGSLSS  161 (210)
T ss_dssp             EEEEBSSCCEEEEGGGTBCT
T ss_pred             EeeEecCCcEEEEeeCCccc
Confidence            94444877 99999998764

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.57  E-value=5.2e-15  Score=108.99  Aligned_cols=142  Identities=18%  Similarity=0.314  Sum_probs=85.6

Q ss_pred             eeecCCCceEEEEEeeCCCCC-----ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPP-----LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~-----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      +.+.+|+.++|.|.+ .+.|.     +.+.|++++....    ......+  .. .     .....+.+...    ..  
T Consensus         5 v~~~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~----i~~~~~~--~~-~-----~~~~~~r~~~~----~~--   65 (222)
T 4i0k_A            5 VVALVDTDATLRCSF-SPEPGFSLAQLNLIWQLTDTKQL----VHSFTEG--RD-Q-----GSAYSNRTALF----PD--   65 (222)
T ss_dssp             CCCCTTSCEEECCBC-CCCTTCCTTTEEEEEEETTTCCE----EEEEETT--EE-E-----EESSCSCEECC----TT--
T ss_pred             EEEECCCCeEEEEEe-cCCCCCCCCceEEEEEECCCccE----EEEEcCC--cc-c-----ccceeCcEEEe----cc--
Confidence            567899999999998 45543     7899999764321    0000000  00 0     00000000000    00  


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC---CCCCCCCcccccCCceEEEEEEeecCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP---PHIGPFTFGELMEGVRTQVACVVQSGD  267 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~v~l~C~~~~~~  267 (291)
                            .......+|.|.++..+|+|.|+|.+.+.. ..+..+.|.|..+   |.+...+...+.+|+.++|.|.+..+.
T Consensus        66 ------~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~  138 (222)
T 4i0k_A           66 ------LLVQGNASLRLQRVRVTDEGSYTCFVSIQD-FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGY  138 (222)
T ss_dssp             ------TGGGTBCCEEECSCCGGGCSCEEEEEEECC-CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEB
T ss_pred             ------cccCCeEEEEECCcccccCEEEEEEEEeCC-CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEeccccc
Confidence                  001125679999999999999999999863 4455666666654   444444444478999999999997788


Q ss_pred             CCceEEEEE-CCEEccC
Q psy14540        268 LPLSLQWYK-NGLAISQ  283 (291)
Q Consensus       268 p~~~v~W~~-~~~~l~~  283 (291)
                      |.+.+.|++ ++..+..
T Consensus       139 P~~~v~W~~~~~~~~~~  155 (222)
T 4i0k_A          139 PEAEVFWKDGQGVPLTG  155 (222)
T ss_dssp             SCCEEEEECTTSCBCCS
T ss_pred             CCCeEEEEcCCCccCCC
Confidence            999999999 5555543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.57  E-value=4e-14  Score=106.21  Aligned_cols=138  Identities=18%  Similarity=0.286  Sum_probs=82.7

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+..+.+.+|+.++|.|.+ .+.|.+.+.|+++....  ..........  ..       .....+.|            
T Consensus        10 ~p~~~~v~~G~~v~L~C~~-~~~~~~~i~W~k~~~~~--~~~~l~~~~~--~~-------~~~~~~r~------------   65 (250)
T 3esu_F           10 STSSLSASLGDRVTISCRA-SQDIRNYLNWYQQKPDG--TVKLLIYYTS--RL-------QSGVPSRF------------   65 (250)
T ss_dssp             SCSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTS--CEEEEEETTT--EE-------CTTCCTTE------------
T ss_pred             cCCEEEeeCCCcEEEEEEe-cccCCceEEEEEECCCC--CCEEEEEEeC--CC-------CCCCCCCE------------
Confidence            3455778899999999999 68888899999853110  0000000000  00       00011112            


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecC--------------------CCCCCCCccc
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVP--------------------PHIGPFTFGE  250 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~--------------------p~~~~~~~~~  250 (291)
                         .+.......+|.|.++..+|+|.|.|.+.|..+. ......|.|..+                    +.+..+....
T Consensus        66 ---~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (250)
T 3esu_F           66 ---SGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEL  142 (250)
T ss_dssp             ---EEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEE
T ss_pred             ---EEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceE
Confidence               1222233457888888888888888888876532 223345556543                    1222223333


Q ss_pred             ccCCceEEEEEEeecCCC--CceEEEEEC
Q psy14540        251 LMEGVRTQVACVVQSGDL--PLSLQWYKN  277 (291)
Q Consensus       251 ~~~g~~v~l~C~~~~~~p--~~~v~W~~~  277 (291)
                      +.+|+.++|.|.+ .+.|  .+.+.|+|+
T Consensus       143 v~~G~~v~L~C~~-~~~~~~~~~v~W~k~  170 (250)
T 3esu_F          143 VKPGASVKISCKD-SGYAFSSSWMNWVKQ  170 (250)
T ss_dssp             ECTTCCEEEEEEC-CSTTGGGSEEEEEEE
T ss_pred             EcCCceEEEEEEe-cCCcccCCEEEEEEE
Confidence            8999999999999 7766  689999997

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.57  E-value=1.3e-14  Score=110.71  Aligned_cols=144  Identities=15%  Similarity=0.257  Sum_probs=87.3

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEee------CCCCCceeEEEEEEec
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT------LSTGHSGNYTCVASNT  186 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~------~~~~d~g~y~C~~~~~  186 (291)
                      +..+.+.+|+.++|.|.+ .+.+.+.+.|++++..-  .....          +....      ......+.|.      
T Consensus        31 p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~R~~------   91 (279)
T 2wbj_D           31 PSWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQ--SLMLM----------ATSNEGSKATYEQGVEKDKFL------   91 (279)
T ss_dssp             CSEEEEETTSCEEEEEEE-SSSCEEEEEEEEECSSS--CCEEE----------EEEESSSCCCCCSSSCSSSEE------
T ss_pred             CCeEEecCCCeEEEEEEe-CCCCCCeEEEEEeCCCC--CeEEE----------EEEecCCcceecCCccCCcEE------
Confidence            345778899999999999 57788899999864210  00000          00000      0000011121      


Q ss_pred             CCCCCCceEEEE-eccceEEEEeeeecCCCeeEEEEeeeCCc------cCCceeEEEEec------CCCCCCCCcc--cc
Q psy14540        187 VASDNHSSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNTVA------SDNHSSNLRVNV------PPHIGPFTFG--EL  251 (291)
Q Consensus       187 ~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~------~~~~~~~l~v~~------~p~~~~~~~~--~~  251 (291)
                               +.. .....+|.|.++..+|+|.|.|.+.+..+      .......|.|..      +|.+......  .+
T Consensus        92 ---------~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~  162 (279)
T 2wbj_D           92 ---------INHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEI  162 (279)
T ss_dssp             ---------EEECSSSEEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHH
T ss_pred             ---------EEeCCCCEEEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccc
Confidence                     111 12245788899999999999999988421      112334566654      4444332221  15


Q ss_pred             cCCceEEEEEEeecCCCC-ceEEEEECCEEccCC
Q psy14540        252 MEGVRTQVACVVQSGDLP-LSLQWYKNGLAISQP  284 (291)
Q Consensus       252 ~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~~~  284 (291)
                      .+|+.++|.|.+.+.+|+ +.|.|++||+++..+
T Consensus       163 ~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~  196 (279)
T 2wbj_D          163 SHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG  196 (279)
T ss_dssp             HHHSCCEEEEEEEEEBSSCEEEEEEETTEECCTT
T ss_pred             cCCCceEEEEEEeeEcCCCcEEEEEECCEECCCC
Confidence            579999999999444464 799999999988643

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.57  E-value=1.6e-14  Score=106.35  Aligned_cols=81  Identities=17%  Similarity=0.283  Sum_probs=57.7

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCc-----cCCceeEEEEec----CCCCCCCCc-ccccCCceEEEEEEeecCCCCc-
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVA-----SDNHSSNLRVNV----PPHIGPFTF-GELMEGVRTQVACVVQSGDLPL-  270 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~-----~~~~~~~l~v~~----~p~~~~~~~-~~~~~g~~v~l~C~~~~~~p~~-  270 (291)
                      ...|.|.++...|+|.|.|.+.+..+     .......|.|..    +|.+..... ..+.+|+.++|.|.+.+..|.| 
T Consensus        80 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~  159 (222)
T 1q9r_B           80 ILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPV  159 (222)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCC
T ss_pred             eEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCC
Confidence            45789999999999999999988653     222345666654    343333222 2267899999999994445877 


Q ss_pred             eEEEEECCEEcc
Q psy14540        271 SLQWYKNGLAIS  282 (291)
Q Consensus       271 ~v~W~~~~~~l~  282 (291)
                      .|.|+++|..+.
T Consensus       160 ~v~W~~~g~~~~  171 (222)
T 1q9r_B          160 TVTWNSGSLSSG  171 (222)
T ss_dssp             EEEEGGGTBCTT
T ss_pred             EEEEecCCeEcc
Confidence            999999998763

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.57  E-value=2.2e-14  Score=101.81  Aligned_cols=135  Identities=14%  Similarity=0.207  Sum_probs=85.4

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeEC-CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN-GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ..+.+.+|+.++|.|.+....+.+.+.|+++ +..+.     .+. .+. .  ...  ......+.+             
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~-----~~~-~~~-~--~~~--~~~~~~~R~-------------   62 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKIL-----EYF-PNG-K--KTV--FESVFKDRV-------------   62 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEE-----EEC-SSS-C--EEE--CSSTTTTTE-------------
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEE-----EEE-CCC-C--eeE--cchhcCCeE-------------
Confidence            3467889999999999733344689999985 22211     000 000 0  000  000000111             


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceE
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSL  272 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v  272 (291)
                          .+.....+|.|.+++..|+|.|+|.+.+.. .....+.|.|..++..   + .....+..++|+|.+..+ |.|.|
T Consensus        63 ----~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~~---P-~i~~~~~~v~L~C~~~~g-p~p~i  132 (180)
T 2dru_A           63 ----DLDKTNGALRIYNVSKEDRGDYYMRMLHET-EDQWKITMEVYEMVSK---P-MIYWECSNATLTCEVLEG-TDVEL  132 (180)
T ss_dssp             ----EECTTTCCEEECSCCGGGCEEEEEEEESSS-EEEEEEEEEEECCCCC---C-EEEEEGGGTEEEEECSSC-TTCEE
T ss_pred             ----EEeCCCccEEEcCCCHHHCeEEEEEEEcCC-eEEEEEEEEEECCCCC---C-EEEecCCCEEEEEEeCCC-CCCEE
Confidence                112345689999999999999999998766 5566777888764321   1 112245679999999555 88999


Q ss_pred             EEEECCEEcc
Q psy14540        273 QWYKNGLAIS  282 (291)
Q Consensus       273 ~W~~~~~~l~  282 (291)
                      .|+++|..|+
T Consensus       133 ~W~~~~~~l~  142 (180)
T 2dru_A          133 KLYQGKEHLR  142 (180)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEECCeECc
Confidence            9999999885

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.56  E-value=3.1e-14  Score=106.15  Aligned_cols=137  Identities=17%  Similarity=0.183  Sum_probs=85.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCC----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      +....+.+|+.++|.|.+ .+.|    .+.+.|+++....  ...            +.+....     .       ...
T Consensus         8 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~i~W~k~~~~~--~~~------------~~~~~~~-----~-------~~~   60 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRA-GESVDIFGVGFLHWYQQKPGQ--PPK------------LLIYRAS-----N-------LES   60 (240)
T ss_dssp             CSEEEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTS--CCE------------EEEETTT-----E-------ECT
T ss_pred             CCeEEecCCCCEEEEEeC-CCccccCCCceEEEEEECCCC--Cce------------EEEEEec-----c-------cCc
Confidence            345778899999999999 6776    7899999853110  000            0000000     0       000


Q ss_pred             CCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCC-----CCCC--CCcccccCCceEEEE
Q psy14540        189 SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPP-----HIGP--FTFGELMEGVRTQVA  260 (291)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p-----~~~~--~~~~~~~~g~~v~l~  260 (291)
                      .....+.+.......+|.|.++..+|+|.|.|.+.|..+. ......|.|..++     .+..  +....+.+|+.++|.
T Consensus        61 ~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~  140 (240)
T 1moe_A           61 GIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLS  140 (240)
T ss_dssp             TCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEE
T ss_pred             CCCccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEE
Confidence            0011122222233557999999999999999999987643 4455677776643     2211  122238899999999


Q ss_pred             EEeecCCC--CceEEEEEC
Q psy14540        261 CVVQSGDL--PLSLQWYKN  277 (291)
Q Consensus       261 C~~~~~~p--~~~v~W~~~  277 (291)
                      |.+ .+.|  .+.+.|+|+
T Consensus       141 C~~-~g~p~~~~~v~W~k~  158 (240)
T 1moe_A          141 CTA-SGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             EEE-ESSCGGGSCEEEEEE
T ss_pred             EEE-cCccCCCCEEEEEEE
Confidence            999 6666  369999996

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.56  E-value=6.7e-14  Score=91.41  Aligned_cols=88  Identities=22%  Similarity=0.376  Sum_probs=70.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...+....+.+|+++.|.|.+.+.  +.+.|++++..+. ..++.+.     .....+.|.|.+++.+|+|.|+|.
T Consensus        19 pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~   91 (113)
T 2edh_A           19 PIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLR-----QDGARCELQIRGLVAEDAGEYLCM   91 (113)
T ss_dssp             CCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEE-----EETTEEEEEECSCCSTTCEEEEEE
T ss_pred             CCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEE-----ECCCEEEEEECCCChhhCEEEEEE
Confidence            5688888888999999999999999764  6899999998887 3444332     223356799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +    +.......|.|...|
T Consensus        92 a----~~~~~~~~l~V~~~p  107 (113)
T 2edh_A           92 C----GKERTSAMLTVRAMP  107 (113)
T ss_dssp             E----TTEEEEEEEEECCCC
T ss_pred             e----CCCCEEEEEEEeCCC
Confidence            9    567777888887765

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=5e-14  Score=90.27  Aligned_cols=86  Identities=15%  Similarity=0.302  Sum_probs=66.0

Q ss_pred             CCcceeecce-eeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +|.|+..+.+ ..+.+|+++.|.|.+ +.|.+.+.|+++|..+..  .++...     .......|.|.+++.+|+|.|+
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~   88 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFE-----SIGAKRTLTISQCSLADDAAYQ   88 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEE-----EETTEEEEEECSCSSSSCEEEE
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEE-----ecCCEEEEEECCCCcccCEEEE
Confidence            6788887777 789999999999999 678888999999998873  333321     1233567999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEE
Q psy14540         79 CTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~   97 (291)
                      |.+.    .......|.|.
T Consensus        89 C~a~----~~~~~~~l~V~  103 (104)
T 1pd6_A           89 CVVG----GEKCSTELFVK  103 (104)
T ss_dssp             EEET----TEEECCEEEEE
T ss_pred             EEEC----CCcEEEEEEEe
Confidence            9994    34445555553

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.56  E-value=2.3e-15  Score=114.24  Aligned_cols=130  Identities=11%  Similarity=0.186  Sum_probs=54.9

Q ss_pred             eecceeeeecCCcEEEEEEecC-CCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATG-NPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      +.+....+.+|+.++|.|.+.+ .|..  .|+|+|+++.+.....       .......+|.+.....+|.+.|+|++.+
T Consensus        91 I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~-------~~~~~~~~l~~~~~~~D~g~~~~C~A~~  163 (291)
T 1mq8_A           91 LAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-------VGEPAEVTTTVLVRRDHHGANFSCRTEL  163 (291)
T ss_dssp             BCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC-------CBTTEEEEEECCCSSSCSSCEEEEEEEE
T ss_pred             EecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC-------CCCCceEEEEeeeeeccCCceEEEEEEe
Confidence            3344445889999999999987 4443  5899999987763221       1122335566666666666799999996


Q ss_pred             CCCc--------eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCC-CC--ceeEEeECCEeccC
Q psy14540         84 RVGS--------QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD-PP--LTISWLKNGLPILS  150 (291)
Q Consensus        84 ~~~~--------~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-p~--~~~~W~~~~~~~~~  150 (291)
                      ..+.        .+....|.|+..|...   ... ..+  ..+.+|+.++|.|.+ .|. |.  ..+.|+++|+.+..
T Consensus       164 ~l~~~g~~l~~~~s~~~~L~V~~~P~~~---~~~-~~p--~~l~eG~~v~l~C~~-~g~~P~~~~~v~w~~~g~~l~~  234 (291)
T 1mq8_A          164 DLRPQGLELFENTSAPYQLQTFVLPATP---PQL-VSP--RVLEVDTQGTVVCSL-DGLFPVSEAQVHLALGDQRLNP  234 (291)
T ss_dssp             ECGGGTSCEEEECCCCEECBC---------------------------------------------------------
T ss_pred             cCCccCCccccccccceEEEEEecCCCC---cee-cCC--cCccCCCeEEEEEEc-CCCCCCcccEEEEEECCEecCc
Confidence            5431        2445567777654221   111 111  257799999999999 554 54  26999999988754

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.55  E-value=3.8e-14  Score=105.79  Aligned_cols=137  Identities=14%  Similarity=0.153  Sum_probs=81.7

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.++|.|.+ .+.|.+.+.|+++....  ..........  .       ......+               
T Consensus         8 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~--~~~~~~~~~~--~-------~~~~~~~---------------   60 (242)
T 2znx_A            8 PATLSVTPGNSVSLSCRA-SQSIGNNLHXYQQKSHE--SPRLLIKYAS--Q-------SISGIPS---------------   60 (242)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTS--CCEEEEETTT--E-------ECTTSCT---------------
T ss_pred             CCeEEEcCCCcEEEEEEe-CCCCCceEEEEEeCCCC--CceEEEEecc--c-------cCCCCCC---------------
Confidence            345778899999999999 67888999999853110  0000000000  0       0000011               


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCC--------------CCCCCcccccCCceE
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPH--------------IGPFTFGELMEGVRT  257 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~--------------~~~~~~~~~~~g~~v  257 (291)
                      .+.+.......+|.|.++..+|+|.|.|.+.|..+. ......|.|..+|.              +..++...+.+|+.+
T Consensus        61 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v  140 (242)
T 2znx_A           61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTL  140 (242)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCE
T ss_pred             CEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeE
Confidence            112222233457888888888999999988876532 23345667766542              111222338999999


Q ss_pred             EEEEEeecCCC--CceEEEEEC
Q psy14540        258 QVACVVQSGDL--PLSLQWYKN  277 (291)
Q Consensus       258 ~l~C~~~~~~p--~~~v~W~~~  277 (291)
                      +|.|.+ .+.|  .+.+.|+|+
T Consensus       141 ~L~C~~-~g~~~~~~~v~W~k~  161 (242)
T 2znx_A          141 SLTCSV-TGDSITSDYXSXIRK  161 (242)
T ss_dssp             EEEEEE-ESSCGGGSCEEEEEE
T ss_pred             EEEEEE-EccccCCcceeeEee
Confidence            999999 6665  478999995

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.55  E-value=8.5e-14  Score=102.55  Aligned_cols=149  Identities=16%  Similarity=0.210  Sum_probs=85.7

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      .+.+.+|+.++|.|.+ .+.+  .+.+.|++.....  .............. ..   ......+.|.....        
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~--~~~~~~~~~~~~~~-~~---~~~~~~~R~~~~~~--------   73 (223)
T 1dee_B            9 GGVVQPGKSLRLSCAA-SGFTFSGYGMHWVRQAPGK--GLEWVALISYDESN-KY---YADSVKGRFTISRD--------   73 (223)
T ss_dssp             CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTS--CEEEEEEECTTSCC-EE---ECTTTBTTEEEEEE--------
T ss_pred             CEEEcCCCcEEEEEEe-cCcccCCceEEEEEECCCC--CcEEEEEEecCCCc-cc---cCcccCCeEEEEec--------
Confidence            4678899999999998 4544  4789999853100  00000000000000 00   00001111211100        


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc------cCCceeEEEEec----CCCCCCCC-cccccCCceEEEEE
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA------SDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVAC  261 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~------~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C  261 (291)
                           .......|.|.++..+|+|.|.|.+.+..+      .......|.|..    +|.+.... ...+.+|+.++|.|
T Consensus        74 -----~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C  148 (223)
T 1dee_B           74 -----NSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGC  148 (223)
T ss_dssp             -----TTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEE
T ss_pred             -----CCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEE
Confidence                 011246799999999999999999987642      112334677763    34443222 22367899999999


Q ss_pred             EeecCCCCc-eEEEEE-CCEEccC
Q psy14540        262 VVQSGDLPL-SLQWYK-NGLAISQ  283 (291)
Q Consensus       262 ~~~~~~p~~-~v~W~~-~~~~l~~  283 (291)
                      .+.+..|.+ .|.|++ ||..|..
T Consensus       149 ~~~g~~P~p~~v~W~~~~g~~l~~  172 (223)
T 1dee_B          149 LAQDFLPDSITFSWKYKNNSDISS  172 (223)
T ss_dssp             EEEEEBSSCCEEEEEETTSCBCSC
T ss_pred             EEEEEeCCCeEEEeEccCCCccce
Confidence            995455776 999999 9988754

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=8.1e-14  Score=88.59  Aligned_cols=87  Identities=21%  Similarity=0.377  Sum_probs=63.2

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+   .|.+.+.|+++|..+....++.+...+.                             
T Consensus        12 ~~~~~~~v~~G~~v~l~C~v---~p~p~v~W~k~g~~l~~~~r~~i~~~~~-----------------------------   59 (100)
T 2yuz_A           12 TPLTDQTVNLGKEICLKCEI---SENIPGKWTKNGLPVQESDRLKVVQKGR-----------------------------   59 (100)
T ss_dssp             BCCCCEEEETTSCCCEEEEC---SSCCCEEEEETTEECCCCSSEEEEECSS-----------------------------
T ss_pred             ccCCceEEcCCCCEEEEEEe---CCCCeEEEEECCEECCCCCcEEEEEeCC-----------------------------
Confidence            44556789999999999998   6778999999999987665554332211                             


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH  242 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~  242 (291)
                                 ...|.|.++..+|+|.|+|.|.|.  ..+.+..|.|..+|.
T Consensus        60 -----------~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           60 -----------IHKLVIANALTEDEGDYVFAPDAY--NVTLPAKVHVISGPS   98 (100)
T ss_dssp             -----------EEEEEESSCCGGGCSEEEEEESSS--CCCEEEEEEEECCSC
T ss_pred             -----------EEEEEECCCChhhCEEEEEEEcCC--CeeEEEEEEEeCCCC
Confidence                       235667777777778888888776  455667777777664

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.55  E-value=5.8e-14  Score=85.88  Aligned_cols=66  Identities=20%  Similarity=0.496  Sum_probs=45.3

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEE
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV  182 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  182 (291)
                      ..+.+.+|+.+.|.|.+ .+ |.+.+.|+|||.++....++.+...+. ...|.|.++..+|+|.|+|.
T Consensus         4 t~v~~~~G~~v~l~C~v-s~-p~p~v~W~k~g~~l~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~   69 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHL-SG-PGGPVRWYKDGERLASQGRVQLEQAGA-RQVLRVQGARSGDAGEYLCD   69 (84)
T ss_dssp             CCEEECTTSCEEEECCC-SC-CSTTCEEEETTEECCCCSSEEEEECSS-CEEEEESSCSSTTCEEEEEE
T ss_pred             eEEEEecCCCEEEEEEE-CC-CCcEEEEEECCEEccccccEEEeecCC-eEEEEecCCCCcccEEEEEE
Confidence            35778899999999998 55 888999999999998777665544322 23444444444444444443

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.55  E-value=4.2e-14  Score=105.30  Aligned_cols=147  Identities=13%  Similarity=0.230  Sum_probs=86.1

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.++|.|.+ . .+.+.+.|++++...  .....          +....-    ...     ..  +....
T Consensus         6 p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~--~~~~l----------~~~~~~----~~~-----~~--~~~~~   60 (238)
T 1bec_A            6 PRNKVAVTGGKVTLSCQQ-T-NNHNNMYWYRQDTGH--GLRLI----------HYSYGA----GST-----EK--GDIPD   60 (238)
T ss_dssp             CSEEEEETTCCEEEEEEE-S-SCCSEEEEEEECTTS--CEEEE----------EEEEET----TEE-----EE--CSCCT
T ss_pred             CCeeEEeCCCcEEEEEEe-C-CCCceEEEEEECCCC--CEEEE----------EEEeCC----Ccc-----cC--CCccc
Confidence            345778899999999998 3 357899999864110  00000          000000    000     00  00001


Q ss_pred             ceEEEE-eccceEEEEeeeecCCCeeEEEEeeeCCc-----cCCceeEEEEec------CCCCCCCCcc--cccCCceEE
Q psy14540        193 SSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNTVA-----SDNHSSNLRVNV------PPHIGPFTFG--ELMEGVRTQ  258 (291)
Q Consensus       193 ~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-----~~~~~~~l~v~~------~p~~~~~~~~--~~~~g~~v~  258 (291)
                      .+.+.. ......|.|.++..+|+|.|.|.+.+..+     .......|.|..      +|.+......  .+.+|+.++
T Consensus        61 R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~  140 (238)
T 1bec_A           61 GYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKAT  140 (238)
T ss_dssp             TCEEECCSSSEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCS
T ss_pred             eEEEEecCCCEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceE
Confidence            111111 12345789999999999999999987631     112334566654      4444332222  256899999


Q ss_pred             EEEEeecCCCC-ceEEEEECCEEccCC
Q psy14540        259 VACVVQSGDLP-LSLQWYKNGLAISQP  284 (291)
Q Consensus       259 l~C~~~~~~p~-~~v~W~~~~~~l~~~  284 (291)
                      |.|.+.+.+|+ +.|.|++||.++..+
T Consensus       141 L~C~~~g~~P~~~~v~W~~~g~~~~~~  167 (238)
T 1bec_A          141 LVCLARGFFPDHVELSWWVNGKEVHSG  167 (238)
T ss_dssp             EEEEEEEEBSCCEEEEEEETTEEECTT
T ss_pred             EEEEEeeEeCCCcEEEEEECCEECCCc
Confidence            99999444465 499999999988654

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.55  E-value=3.5e-14  Score=92.63  Aligned_cols=96  Identities=21%  Similarity=0.370  Sum_probs=71.0

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecC--CCCCeeEEEECCeecCCCeeEeceEEeec----cceEEEEEEeecCCCCC
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLAGDRFVMGQYMSLH----GDVISHVNISSVRVEDS   74 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~   74 (291)
                      .+|.|...|....+.+|++++|.|.+.+  .+.+.+.|++++..+..............    ......|.|.+++..|+
T Consensus         9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   88 (112)
T 3so5_A            9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE   88 (112)
T ss_dssp             CSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred             CCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccC
Confidence            3788999998899999999999999985  44678999999998874332111010000    01236799999999999


Q ss_pred             eEEEEEEeCCCCc-eeeeeeEEE
Q psy14540         75 GIYQCTATNRVGS-QTHSADMRV   96 (291)
Q Consensus        75 G~y~C~~~~~~~~-~~~~~~l~v   96 (291)
                      |.|+|.+.+..|. .+..+.|.|
T Consensus        89 G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           89 GXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999988776 446666655

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.54  E-value=6.4e-14  Score=106.67  Aligned_cols=137  Identities=17%  Similarity=0.261  Sum_probs=81.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.++|.|.+ .+.|.+.+.|++++....  .........  .       ....               ...
T Consensus        19 p~~~~v~~G~~v~L~C~~-~~~p~~~i~W~r~~~~~~--~~~~~~~~~--~-------~~~~---------------~~~   71 (276)
T 3auv_A           19 PSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKA--PKLLIYSAS--F-------LYSG---------------VPS   71 (276)
T ss_dssp             CSEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSC--CEEEEETTT--E-------ECTT---------------CCT
T ss_pred             CCeEEEcCCCCEEEEeEc-CCCCCCcEEEEEECCCCC--CEEEEEEcC--c-------cCCC---------------CCC
Confidence            445778899999999999 678888999998542100  000000000  0       0000               011


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCC-------------CCCC--CCcccccCCce
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPP-------------HIGP--FTFGELMEGVR  256 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p-------------~~~~--~~~~~~~~g~~  256 (291)
                      .+.+.......+|.|.++..+|+|.|.|.+.|..+. ......|.|..+|             .+..  +....+.+|+.
T Consensus        72 r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~  151 (276)
T 3auv_A           72 RFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGS  151 (276)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCC
T ss_pred             CEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCe
Confidence            112222233457888888889999999998876533 3334556665443             2211  12223889999


Q ss_pred             EEEEEEeecCCC--CceEEEEEC
Q psy14540        257 TQVACVVQSGDL--PLSLQWYKN  277 (291)
Q Consensus       257 v~l~C~~~~~~p--~~~v~W~~~  277 (291)
                      ++|.|.+ .+.|  .+.+.|+|+
T Consensus       152 v~L~C~~-~g~~~~~~~v~W~k~  173 (276)
T 3auv_A          152 LRLSCAA-SGFTISDYWIHWVRQ  173 (276)
T ss_dssp             EEEEEEE-ESSCGGGSEEEEEEE
T ss_pred             EEEEEEe-cCccCCCCEEEEEEc
Confidence            9999999 6655  589999996

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.54  E-value=9.5e-15  Score=93.29  Aligned_cols=92  Identities=24%  Similarity=0.396  Sum_probs=69.1

Q ss_pred             CCcceeec----ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKF----IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~----~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      ||.|...+    ....+.+|+.+.|.|.+.+.|.+.+.|++++..+......... ...  ....+|.|.+++..|+|.|
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~-~~~--~~~~~L~i~~v~~~D~G~Y   80 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY-KVR--NQHWSLIMESVVPSDKGNY   80 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCC-EEE--GGGTEEEECSCCGGGCEEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccE-EEe--cCeEEEEEccCCcCCCEEE
Confidence            67777554    4567899999999999998888999999999887632110000 011  1124599999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEE
Q psy14540         78 QCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v   96 (291)
                      +|.+.|..|.....+.|.|
T Consensus        81 ~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           81 TCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeCCCEEEEEEEEEE
Confidence            9999998888777777765

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.54  E-value=1.8e-14  Score=121.29  Aligned_cols=139  Identities=18%  Similarity=0.226  Sum_probs=91.1

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      ....+.+|+.++|.|.+..+.|.+.+.|++++..+...   ..... ..         .....+.+.             
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~---~~~~~-~~---------~~~~~~r~~-------------  427 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAW---KVLSP-QG---------GGPWDSVAR-------------  427 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSC---EECCS-CC---------SSGGGGTSE-------------
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEE---Eeccc-CC---------CCCcCCcEE-------------
Confidence            34678899999999998557888999999986532111   00000 00         000000000             


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEecCCCC---CCCCcccccCC-ceEEEEEEeecCCC
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNVPPHI---GPFTFGELMEG-VRTQVACVVQSGDL  268 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~~p~~---~~~~~~~~~~g-~~v~l~C~~~~~~p  268 (291)
                          + ....+|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..+|..   ...... +..| ..+.|+|.+.+++|
T Consensus       428 ----~-~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P  501 (581)
T 3o3u_N          428 ----V-LPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASE-LTAGVPNKVGTCVSEGSYP  501 (581)
T ss_dssp             ----E-CTTSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSE-ECTTSCEEEEEEEEEEEBS
T ss_pred             ----E-cCCceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcc-cccCCceeEEEEECCCCCC
Confidence                0 123468999999999999999999888765 67788888775432   222222 4444 44567999955579


Q ss_pred             CceEEEEECCEEccCC
Q psy14540        269 PLSLQWYKNGLAISQP  284 (291)
Q Consensus       269 ~~~v~W~~~~~~l~~~  284 (291)
                      .|.|+|++||++|...
T Consensus       502 ~~~i~W~~~g~~l~~~  517 (581)
T 3o3u_N          502 AGTLSWHLDGKPLVPN  517 (581)
T ss_dssp             CCEEEEEETTEECCTT
T ss_pred             CCeEEEEECCEECCCC
Confidence            9999999999998643

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.54  E-value=2.4e-14  Score=105.67  Aligned_cols=145  Identities=15%  Similarity=0.203  Sum_probs=83.9

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ...+.+|+.++|.|.+ .+.+  .+.+.|+++...-  .............. ..   ......+.|             
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~--~~~~~~~~~~~~~~-~~---~~~~~~~R~-------------   68 (225)
T 1op3_H            9 GGLVKAGGSLILSCGV-SNFRISAHTMNWVRRVPGG--GLEWVASISTSSTY-RD---YADAVKGRF-------------   68 (225)
T ss_dssp             CEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTS--CEEEEEEECGGGCC-EE---ECTTTTTTE-------------
T ss_pred             CeEecCCCCEEEEEEe-cCcccCCceEEEEEeCCCC--CcEEEEEEccCCCc-cc---cCcccCCce-------------
Confidence            3678899999999999 4555  6789999853100  00000000000000 00   000001111             


Q ss_pred             ceEEEEe--ccceEEEEeeeecCCCeeEEEEeeeCCc--------cCCceeEEEEec----CCCCCCC-CcccccCCceE
Q psy14540        193 SSNLRVN--EYTSSLSIATLSTGHSGNYTCVASNTVA--------SDNHSSNLRVNV----PPHIGPF-TFGELMEGVRT  257 (291)
Q Consensus       193 ~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~~~~~--------~~~~~~~l~v~~----~p~~~~~-~~~~~~~g~~v  257 (291)
                        .+...  .....|.|.++..+|+|.|.|.+.+..+        .......|.|..    +|.+... +...+.+|+.+
T Consensus        69 --~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v  146 (225)
T 1op3_H           69 --TVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTA  146 (225)
T ss_dssp             --EEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEE
T ss_pred             --EEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcE
Confidence              11111  2246788999999999999999988653        112345677764    2433322 22236789999


Q ss_pred             EEEEEeecCCCCc-eEEEEECCEEc
Q psy14540        258 QVACVVQSGDLPL-SLQWYKNGLAI  281 (291)
Q Consensus       258 ~l~C~~~~~~p~~-~v~W~~~~~~l  281 (291)
                      +|.|.+.+.+|.+ .|.|+++|..+
T Consensus       147 ~L~C~~~g~~P~p~~v~W~~~~~~~  171 (225)
T 1op3_H          147 ALGCLVKDYFPEPVTVSWNSGALTS  171 (225)
T ss_dssp             EEEEEEEEEBSSCCEEECCTTSCCT
T ss_pred             EEEEEEEeEECCCeEEEEecCCCcC
Confidence            9999995444766 99999998764

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.7e-14  Score=91.35  Aligned_cols=82  Identities=26%  Similarity=0.517  Sum_probs=66.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.|...|....+.+|+.++|.|.+.+.|.+.+.|++++..+....             ...|.|.+++..|+|.|+|.+
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a   76 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-------------SPVLILPEIGPQDQGTYSCVA   76 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC-------------CSEEEEESCCTTTCEEEECEE
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC-------------CCEEEECCCCcccCEEEEEEE
Confidence            6788889988899999999999999988888999999998776321             135889999999999999999


Q ss_pred             eCCCCce--eeeeeEEE
Q psy14540         82 TNRVGSQ--THSADMRV   96 (291)
Q Consensus        82 ~~~~~~~--~~~~~l~v   96 (291)
                      .+..+..  +..+.+.|
T Consensus        77 ~n~~~~~~~s~~~~v~V   93 (96)
T 2ens_A           77 THSSHGPQESRAVSISI   93 (96)
T ss_dssp             CCSSCCCEECCCEEEEE
T ss_pred             EeCCCCcEEEEEEEEEE
Confidence            9865543  33444444

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.54  E-value=3.8e-14  Score=90.28  Aligned_cols=77  Identities=23%  Similarity=0.273  Sum_probs=51.7

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      .+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....+............|.|.++..+|.|.|+|.+.|..|.
T Consensus        11 ~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~   87 (99)
T 1g1c_A           11 RIQSQTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGE   87 (99)
T ss_dssp             CCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cCcceEEcCCCcEEEEEEE-EEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCc
Confidence            3445778899999999999 5889999999999999876655443322233444555555555555555555554443

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.54  E-value=8e-14  Score=103.77  Aligned_cols=138  Identities=12%  Similarity=0.190  Sum_probs=82.0

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      +..+.+.+|+.++|.|..  +.|.+.+.|+++.  ...                .+.+....  ....+     .  +..
T Consensus         7 p~~~~v~~G~~v~L~C~~--~~~~~~i~W~k~~~~~~~----------------~~~~~~~~--~~~~~-----~--~~~   59 (238)
T 2p1y_A            7 PRNKVAVTGGKVTLSCNQ--TNNHNNMYWYRQDTGHGL----------------RLIHYSYG--AGSTE-----K--GDI   59 (238)
T ss_dssp             CSEEEEETTCCEEEEEEE--CSCCSEEEEEEEETTTEE----------------EEEEEESS--TTCCE-----E--CSS
T ss_pred             ccceEEeCCCEEEEEeec--CCCCccEEEEEECCCCCc----------------EEEEEEec--Cccee-----C--CCc
Confidence            345778899999999993  6788999999852  111                00000000  00000     0  000


Q ss_pred             CCceEEEE-eccceEEEEeeeecCCCeeEEEEeeeCCcc-----CCceeEEEEecCC------------CCCCCCccc-c
Q psy14540        191 NHSSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNTVAS-----DNHSSNLRVNVPP------------HIGPFTFGE-L  251 (291)
Q Consensus       191 ~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-----~~~~~~l~v~~~p------------~~~~~~~~~-~  251 (291)
                      ...+.+.. .....+|.|.++..+|+|.|.|.+.+..+.     ......|.|...+            .+...+... +
T Consensus        60 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v  139 (238)
T 2p1y_A           60 PDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTV  139 (238)
T ss_dssp             CTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEE
T ss_pred             cceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEE
Confidence            00111111 122457888888889999999998876532     1233456665543            343333333 8


Q ss_pred             cCCceEEEEEEeecCCCCceEEEEECC
Q psy14540        252 MEGVRTQVACVVQSGDLPLSLQWYKNG  278 (291)
Q Consensus       252 ~~g~~v~l~C~~~~~~p~~~v~W~~~~  278 (291)
                      .+|+.++|.|.+ .+.|.+.+.|+|++
T Consensus       140 ~~G~~v~L~C~~-~~~p~~~i~W~k~~  165 (238)
T 2p1y_A          140 WEGETAILNCSY-ENSAFDYFPWYQQF  165 (238)
T ss_dssp             ETTSCEEEEEEC-CCTTCCEEEEEEEC
T ss_pred             eCCCeEEEEEEE-ecCCCCcEEEEEEC
Confidence            999999999999 88888999999964

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.53  E-value=8.5e-14  Score=94.25  Aligned_cols=87  Identities=26%  Similarity=0.469  Sum_probs=67.8

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-----------eeEeceEEeeccceEEEEEEeec
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-----------RFVMGQYMSLHGDVISHVNISSV   69 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~i~~~   69 (291)
                      .||.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+...           +....  ..........|.|.++
T Consensus        20 ~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIH--ATYHQHAASTISIDTL   97 (137)
T ss_dssp             -CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEE--EEESSSEEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEe--cccccccceEEEECCC
Confidence            3799999999999999999999999999999999999987755421           11111  1112234478999999


Q ss_pred             CCCCCeEEEEEEeCCCCcee
Q psy14540         70 RVEDSGIYQCTATNRVGSQT   89 (291)
Q Consensus        70 ~~~d~G~y~C~~~~~~~~~~   89 (291)
                      +.+|+|.|+|.+.|..|...
T Consensus        98 ~~~D~G~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A           98 VEEDTGTYECRASNDPDRNH  117 (137)
T ss_dssp             CGGGCEEEEEEEECCTTSSS
T ss_pred             CcccCEEEEEEEEecCCccc
Confidence            99999999999999887653

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.53  E-value=2.9e-13  Score=101.02  Aligned_cols=151  Identities=15%  Similarity=0.155  Sum_probs=85.6

Q ss_pred             CcceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      +..+.+.+|+.++|.|.+... .+.+.+.|+++...-  .............  ....  .....+.|.-...       
T Consensus         8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~~--~~~~--~~~~~~R~~~~~~-------   74 (242)
T 1hxm_B            8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGE--VIQFLVSISYDGT--VRKE--SGIPSGKFEVDRI-------   74 (242)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTS--CCEEEEEECSSSC--EEEC--TTCCTTSEEEEEE-------
T ss_pred             CceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCC--CcEEEEEEecCCc--eecC--CcccCCeEEEEec-------
Confidence            455788899999999998432 256789999853110  0000000000000  0000  0001122221110       


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc-------cCCceeEEEEec-------CCCCCCCC-c-ccccCCc
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA-------SDNHSSNLRVNV-------PPHIGPFT-F-GELMEGV  255 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-------~~~~~~~l~v~~-------~p~~~~~~-~-~~~~~g~  255 (291)
                            ......+|.|.++..+|+|.|.|.+.+...       .......|.|..       +|...... . ..+.+|+
T Consensus        75 ------~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~  148 (242)
T 1hxm_B           75 ------PETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQK  148 (242)
T ss_dssp             ------TTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSS
T ss_pred             ------CCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCC
Confidence                  001256789999999999999999987531       112345677765       23332222 2 2266899


Q ss_pred             eEEEEEEeecCCCC-ceEEEEECCE-Ecc
Q psy14540        256 RTQVACVVQSGDLP-LSLQWYKNGL-AIS  282 (291)
Q Consensus       256 ~v~l~C~~~~~~p~-~~v~W~~~~~-~l~  282 (291)
                      .++|.|.+.+.+|. +.|.|+++|. .+.
T Consensus       149 ~v~L~C~~~g~~P~~~~v~W~~~~~~~l~  177 (242)
T 1hxm_B          149 AGTYLCLLEKFFPDVIKIHWEEKKSNTIL  177 (242)
T ss_dssp             CEEEEEEEEEESSCCEEEEEEESSSCCCC
T ss_pred             CceEEEEEeeEECCCeEEEEEcCCCEeec
Confidence            99999999544564 7999999987 564

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.53  E-value=8.2e-14  Score=90.22  Aligned_cols=89  Identities=20%  Similarity=0.416  Sum_probs=70.2

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .||.|...+....+.+|++++|.|.+.+.  +.+.|++++..+. ..++...     .....+.|.|.+++.+|+|.|+|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C   79 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLK-----QDGTRCELQIHDLSVADAGEYSC   79 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEE-----EETTEEEEEESSCCTTTCSEEEE
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEE-----ecCCEEEEEECCCCcccCEEEEE
Confidence            37899988999999999999999999764  6899999998876 3333321     22345779999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEcCC
Q psy14540         80 TATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      .+.    .......|.|...|
T Consensus        80 ~a~----n~~~~~~l~V~~~p   96 (108)
T 2dm7_A           80 MCG----QERTSATLTVRALP   96 (108)
T ss_dssp             EET----TEEEEEECEEECCC
T ss_pred             EEc----CCEEEEEEEEecCC
Confidence            994    35667777887654

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.53  E-value=7e-14  Score=102.78  Aligned_cols=145  Identities=14%  Similarity=0.246  Sum_probs=85.3

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ...+.+|+.++|.|.+ .+.+  .+.+.|++....-  .............. ..   ......+.|             
T Consensus         9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~--~~~~l~~~~~~~~~-~~---~~~~~~~R~-------------   68 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAA-SGFDFSKYWMSWVRQAPGK--GLEWIGEIHPDSGT-IN---YTPSLKDKF-------------   68 (220)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTS--CEEEEEEECTTSSC-EE---ECTTTTTTE-------------
T ss_pred             CeEecCCCcEEEEEEe-cCccCCCceEEEEEECCCC--CeEEEEEEccCCCc-ee---cCCccCCcE-------------
Confidence            4678899999999998 4544  5789999853100  00000000000000 00   000001112             


Q ss_pred             ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCcc---CCceeEEEEec----CCCCCCCCcccccCCceEEEEEEe
Q psy14540        193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVAS---DNHSSNLRVNV----PPHIGPFTFGELMEGVRTQVACVV  263 (291)
Q Consensus       193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~---~~~~~~l~v~~----~p~~~~~~~~~~~~g~~v~l~C~~  263 (291)
                        .+..  ......|.|.++..+|+|.|.|.+.+..+.   ......|.|..    +|.+...+...+..|+.++|.|.+
T Consensus        69 --~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~  146 (220)
T 2fbj_H           69 --IISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLI  146 (220)
T ss_dssp             --EEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEE
T ss_pred             --EEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEE
Confidence              1111  122457899999999999999999886432   23345677764    344433332236799999999999


Q ss_pred             ecCCCC--ceEEEEECCEEc
Q psy14540        264 QSGDLP--LSLQWYKNGLAI  281 (291)
Q Consensus       264 ~~~~p~--~~v~W~~~~~~l  281 (291)
                      .+.+|.  +.|.|+++|..+
T Consensus       147 ~g~~P~~~~~v~W~~~~~~~  166 (220)
T 2fbj_H          147 HDYFPSGTMNVTWGKSGKDI  166 (220)
T ss_dssp             EEEBSCCCEEEEESCCCSSC
T ss_pred             EeEECCCcEEEEEecCCEec
Confidence            544476  799999999765

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.53  E-value=2.6e-14  Score=105.19  Aligned_cols=77  Identities=13%  Similarity=0.301  Sum_probs=52.3

Q ss_pred             ceeecCCCceEEEEEeeCCCCCc---eeEEeECCEeccC----------------CCceEEec------cCCceEEEEEe
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPL---TISWLKNGLPILS----------------DAEITIRS------SGEYTSSLSIA  169 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~~~~~~~----------------~~~~~~~~------~~~~~~~l~i~  169 (291)
                      .+.+..|+.++|.|.+ .+.+.+   .+.|+|++..+..                ..+.....      .......|.|.
T Consensus        10 ~V~~~~G~~v~L~C~~-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHL-LPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             EEEEETTSCEEECCEE-CSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             EEEEecCCCEEEEEEE-ECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            4677899999999998 565554   4899997643311                01111110      11234579999


Q ss_pred             eCCCCCceeEEEEEEecCCCCCC
Q psy14540        170 TLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       170 ~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +++.+|+|.|+|.+.+..+....
T Consensus        89 ~v~~~D~G~Y~C~~~~~~~~~~~  111 (225)
T 4fmk_A           89 GLRVEDEGNYTCEFATFPNGTRR  111 (225)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEE
T ss_pred             cCCHHHCcceEEEEEeCCCccee
Confidence            99999999999999987665433

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=2.1e-13  Score=89.04  Aligned_cols=89  Identities=21%  Similarity=0.362  Sum_probs=68.6

Q ss_pred             CCcceeecce---eeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQ---QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~---~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      ||.++..|..   ..+.+|+.+.|.|.+. .|.+.+.|++++..+.. .++..     ........|.|.+++.+|+|.|
T Consensus        10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y   83 (113)
T 2cpc_A           10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLL-----QKEDTVRRLVLPAVQLEDSGEY   83 (113)
T ss_dssp             CSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEE-----EECSSEEEEEESSCCTTTCEEE
T ss_pred             CCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEE-----EECCCEEEEEECCCCcccCEEE
Confidence            5666666655   6788999999999996 78889999999998863 23222     1223346799999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEEEcCC
Q psy14540         78 QCTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +|.+.+    ....+.|.|...|
T Consensus        84 ~C~a~n----~~~~~~l~V~~~p  102 (113)
T 2cpc_A           84 LCEIDD----ESASFTVTVTEPP  102 (113)
T ss_dssp             EEESSS----CEEEEEEEEECCC
T ss_pred             EEEEec----CcEEEEEEEecCC
Confidence            999986    5567778887765

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.53  E-value=6.4e-14  Score=105.29  Aligned_cols=146  Identities=18%  Similarity=0.262  Sum_probs=84.3

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.++|.|.+ .+.+.+.+.|++....    ...          .+.+.....   +.+.-..      ...
T Consensus         8 p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~----~~~----------~~~~~~~~~---~~~~~~~------~~~   63 (253)
T 3to4_D            8 PRWRLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQ----KQL----------QWLFTLRSP---GDKEVKS------LPG   63 (253)
T ss_dssp             CSEEEEESSCCEEEEEEC-SCTTCCCEEEEEEETT----CCE----------EEEEEECST---TCEEEEE------ETT
T ss_pred             CCeEEEeCCCcEEEEEEe-CCCCcceEEEEEECCC----CCc----------EEEEEECCC---cceecCC------ccC
Confidence            345778899999999997 5778889999983210    000          000000000   0000000      000


Q ss_pred             -ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc------cCCceeEEEEec------CCCCCCCCccc--ccCCceE
Q psy14540        193 -SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA------SDNHSSNLRVNV------PPHIGPFTFGE--LMEGVRT  257 (291)
Q Consensus       193 -~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~------~~~~~~~l~v~~------~p~~~~~~~~~--~~~g~~v  257 (291)
                       .+.+....... |.|.++..+|+|.|.|.+.+..+      .......|.|..      +|.+.......  +..|+.+
T Consensus        64 ~R~~~~~~~~~~-L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~  142 (253)
T 3to4_D           64 ADYLATRVTDTE-LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKA  142 (253)
T ss_dssp             EEEEEECCSSSC-CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEE
T ss_pred             CcEEEEeCCCCe-EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCce
Confidence             11111111122 88999999999999999986542      122233556653      33333222111  3457899


Q ss_pred             EEEEEeecCCCCc-eEEEEECCEEccC
Q psy14540        258 QVACVVQSGDLPL-SLQWYKNGLAISQ  283 (291)
Q Consensus       258 ~l~C~~~~~~p~~-~v~W~~~~~~l~~  283 (291)
                      +|.|.+.+++|++ .+.|++||.++..
T Consensus       143 ~L~C~~~g~~P~~i~v~W~k~g~~l~~  169 (253)
T 3to4_D          143 TLVCLATGFYPDHVELSWWVNGKEVHS  169 (253)
T ss_dssp             EEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             EEEEEEceEECCcEEEEEEECCEECCC
Confidence            9999995547766 9999999999865

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.53  E-value=1.1e-13  Score=104.12  Aligned_cols=136  Identities=16%  Similarity=0.268  Sum_probs=80.0

Q ss_pred             cceeecCCCceEEEEEeeCCC--CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGD--PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ....+.+|+.++|.|.+ .+.  +.+.+.|+++....  ...........         ......+.|            
T Consensus        10 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~---------~~~~~~~r~------------   65 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSG-SSSNIGSNYVSWYQQLPGT--APKLLIYDNNQ---------RPSGVPDRF------------   65 (256)
T ss_dssp             SEEEECTTCCEEEEEEC-CTTTTTTSCCEEEEECTTS--CCEEEEBTTTB---------CCTTCCTTE------------
T ss_pred             CcEEEcCCCcEEEEEec-CCCCCCCceEEEEEECCCC--CCEEEEEecCC---------CCCCcCCcE------------
Confidence            34788899999999998 455  77899999853110  00000000000         000001111            


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEecCCC---------------------CCCCC
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVNVPPH---------------------IGPFT  247 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~~~p~---------------------~~~~~  247 (291)
                         .+........|.|.++..+|+|.|.|.+.+..+   .......|.|..++.                     +...+
T Consensus        66 ---~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (256)
T 3ux9_B           66 ---SGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESG  142 (256)
T ss_dssp             ---EEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEEC
T ss_pred             ---EEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCC
Confidence               222222345788888888888888888887542   233445666665431                     22222


Q ss_pred             cccccCCceEEEEEEeecCCC--CceEEEEEC
Q psy14540        248 FGELMEGVRTQVACVVQSGDL--PLSLQWYKN  277 (291)
Q Consensus       248 ~~~~~~g~~v~l~C~~~~~~p--~~~v~W~~~  277 (291)
                      ...+.+|+.++|.|.+ .+.+  .+.+.|+|+
T Consensus       143 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~  173 (256)
T 3ux9_B          143 GGLVQPGGSLRLSCAA-SGFTFSSYAMSWVRQ  173 (256)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEE
T ss_pred             CeEEcCCCeEEEEEEE-eCCcccccEEEEEEE
Confidence            2238899999999999 6655  689999997

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.53  E-value=2.7e-13  Score=88.86  Aligned_cols=94  Identities=22%  Similarity=0.360  Sum_probs=70.8

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .+......+.                            
T Consensus        20 ~~p~~~~v~~G~~v~L~C~~-~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~----------------------------   70 (116)
T 2kkq_A           20 YKPQSKKVLEGDSVKLECQI-SAIPPPKLFWKRNNEMVQFNTDRISLYQDNT----------------------------   70 (116)
T ss_dssp             SCCCCEEEETTEEEEEEEEB-CCBSCCEEEEEETTEECCCCBTTEEEEECTT----------------------------
T ss_pred             eCCCcEEEeCCCcEEEEEEE-eccCCCEEEEEECCEECcCCCCeEEEEeCCC----------------------------
Confidence            44566789999999999999 68999999999999887542 2222211111                            


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCC
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIG  244 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~  244 (291)
                                 ...+|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|...
T Consensus        71 -----------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           71 -----------GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             -----------CEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEECCSCCC
T ss_pred             -----------CeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeCCCCCC
Confidence                       02368888888899999999999988888888888888877543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.52  E-value=6.4e-14  Score=103.01  Aligned_cols=79  Identities=18%  Similarity=0.350  Sum_probs=55.5

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCcc---CCceeEEEEec----CCCCCCCCc-ccccCCceEEEEEEeecCCCCc-eE
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVAS---DNHSSNLRVNV----PPHIGPFTF-GELMEGVRTQVACVVQSGDLPL-SL  272 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~---~~~~~~l~v~~----~p~~~~~~~-~~~~~g~~v~l~C~~~~~~p~~-~v  272 (291)
                      ...|.|.++...|+|.|.|.+.+..+.   ......|.|..    +|.+...+. ..+.+|+.++|.|.+.+..|.| .|
T Consensus        80 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  159 (220)
T 1pz5_B           80 SVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTV  159 (220)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEE
T ss_pred             eEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEE
Confidence            457889999999999999999886421   12345666653    344333222 2367899999999994444888 99


Q ss_pred             EEEECCEE
Q psy14540        273 QWYKNGLA  280 (291)
Q Consensus       273 ~W~~~~~~  280 (291)
                      .|++++..
T Consensus       160 ~W~~~~~~  167 (220)
T 1pz5_B          160 KWNYGALS  167 (220)
T ss_dssp             EEGGGTCC
T ss_pred             EEecCCcc
Confidence            99999863

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.52  E-value=3.4e-14  Score=104.97  Aligned_cols=146  Identities=18%  Similarity=0.266  Sum_probs=79.6

Q ss_pred             cceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ....+.+|+.++|.|.+ .+.+  .+.+.|++++...    ....        .+.+..  ......|     ..  ...
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~----~~~~--------l~~~~~--~~~~~~~-----~~--~~~   65 (227)
T 1mju_H            8 GAELVKPGASVKLSCKA-SGYTFTNYWINWVKQRPGQ----GLEW--------IGNIYP--GSSYTHY-----NE--KFK   65 (227)
T ss_dssp             SEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTS----CEEE--------EEEEET--TTTEEEE-----CG--GGT
T ss_pred             CCeEEcCCCCEEEEEEe-cCCccccceEEEEEeCCCC----CcEE--------EEEEec--cCCceee-----CC--ccC
Confidence            44678899999999999 4555  6789999854110    0000        000000  0000000     00  000


Q ss_pred             CceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCc-cCCceeEEEEec----CCCCCCCC-cccccCCceEEEEEEe
Q psy14540        192 HSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVA-SDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVACVV  263 (291)
Q Consensus       192 ~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C~~  263 (291)
                      ..+.+..  ......|.|.++..+|+|.|.|.+.+... .......|.|..    +|.+.... ...+.+|+.++|.|.+
T Consensus        66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~  145 (227)
T 1mju_H           66 NKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLV  145 (227)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEE
T ss_pred             CcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEe
Confidence            1111111  12346788999999999999999987532 122334667764    23333222 2236789999999999


Q ss_pred             ecCCCCc-eEEEEECCEEc
Q psy14540        264 QSGDLPL-SLQWYKNGLAI  281 (291)
Q Consensus       264 ~~~~p~~-~v~W~~~~~~l  281 (291)
                      .+.+|.+ .|.|+++|..+
T Consensus       146 ~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H          146 KGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             EEEBSSCCEEEEGGGTBCT
T ss_pred             ecEeCCCeEEEEecCCCcC
Confidence            4445766 99999999865

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.52  E-value=1.3e-13  Score=103.81  Aligned_cols=141  Identities=15%  Similarity=0.178  Sum_probs=82.5

Q ss_pred             cceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ....+.+|+.++|.|.+... .+.+.+.|++....    ....        ..+.+..   .....+       ......
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~----~~~~--------~~~~~~~---~~~~~~-------~~~~~~   73 (257)
T 3gkz_A           16 GPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPG----NKLD--------YMGYISY---RGSTYY-------NPSLKS   73 (257)
T ss_dssp             CCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTT----SCEE--------EEEEEET---TCCEEE-------CTTTTT
T ss_pred             CCeEEcCCCcEEEEEEEEcccccceEEEEEEECCC----CCcE--------EEEEEec---CCcEEe-------cccccc
Confidence            34568899999999998432 35789999984211    0000        0000100   000000       000111


Q ss_pred             ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCC----ccCCceeEEEEecC--------------CCCCCCCccc-c
Q psy14540        193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTV----ASDNHSSNLRVNVP--------------PHIGPFTFGE-L  251 (291)
Q Consensus       193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~----~~~~~~~~l~v~~~--------------p~~~~~~~~~-~  251 (291)
                      .+.+..  .....+|.|.++..+|+|.|.|.+.+..    ........|.|..+              +.+...+... +
T Consensus        74 r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v  153 (257)
T 3gkz_A           74 RISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSA  153 (257)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEE
T ss_pred             cEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEE
Confidence            222221  1234579999999999999999998862    22334456666654              3443333333 8


Q ss_pred             cCCceEEEEEEeecCCCCc-eEEEEEC
Q psy14540        252 MEGVRTQVACVVQSGDLPL-SLQWYKN  277 (291)
Q Consensus       252 ~~g~~v~l~C~~~~~~p~~-~v~W~~~  277 (291)
                      .+|+.++|.|.+ .+.|.+ .+.|+|+
T Consensus       154 ~~G~~v~L~C~~-~~~~~~~~v~W~k~  179 (257)
T 3gkz_A          154 SPGEKVTLTCSA-SSSVSSSHLYWYQQ  179 (257)
T ss_dssp             CTTCCEEEEEEE-SSCCCGGGEEEEEE
T ss_pred             eCCCcEEEEEEE-ccCccceEEEEEEE
Confidence            999999999999 667766 9999983

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.52  E-value=9.3e-14  Score=104.04  Aligned_cols=137  Identities=15%  Similarity=0.188  Sum_probs=81.4

Q ss_pred             CcceeecCCCceEEEEEeeCCCC-----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP-----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      +..+.+.+|+.++|.|.+ .+.|     .+.+.|+++...-    ...          +.+....     .+      . 
T Consensus         8 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~----~~~----------~~~~~~~-----~~------~-   60 (247)
T 1svz_A            8 PLYLPVSLGDQASISCRS-SQTIVHNNGNTYLEWYLQKPGQ----SPQ----------LLIYKVS-----NR------F-   60 (247)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTS----CEE----------EEEETTT-----EE------C-
T ss_pred             CCeEEecCCCCEEEEEeC-CCcccccCCCceEEEEEECCCC----Cce----------EEEEEec-----cc------C-
Confidence            345788899999999999 5666     6899999843100    000          0000000     00      0 


Q ss_pred             CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCC------------C--CCCCCccccc
Q psy14540        188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPP------------H--IGPFTFGELM  252 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p------------~--~~~~~~~~~~  252 (291)
                      ......+.+........|.|.++..+|+|.|.|.+.|..+. ......|.|..++            .  +...+...+.
T Consensus        61 ~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  140 (247)
T 1svz_A           61 SGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKK  140 (247)
T ss_dssp             TTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEEC
T ss_pred             CCCCCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeec
Confidence            00011122222233457888889999999999998876532 2334566666542            1  1222223389


Q ss_pred             CCceEEEEEEeecCCC--CceEEEEEC
Q psy14540        253 EGVRTQVACVVQSGDL--PLSLQWYKN  277 (291)
Q Consensus       253 ~g~~v~l~C~~~~~~p--~~~v~W~~~  277 (291)
                      +|+.++|.|.+ .+.+  .+.+.|+|+
T Consensus       141 ~G~~v~L~C~~-~~~~~~~~~v~W~k~  166 (247)
T 1svz_A          141 PGETVKISCKA-TNYAFTDYSMHWVKQ  166 (247)
T ss_dssp             TTCCEEEEEEE-ESSCGGGSCEEEEEE
T ss_pred             CCCcEEEEEEE-cCcccCCcEEEEEEe
Confidence            99999999999 6654  579999996

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.52  E-value=1.7e-13  Score=93.71  Aligned_cols=95  Identities=20%  Similarity=0.292  Sum_probs=71.9

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE---------CCeecCCCeeEeceEEeeccceEEEEEEeecCCCC
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL---------DGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      +.+...|..+.+.+|++++|.|.+.+.+.+.+.|++         ++..+...++....    ......+|.|.+++.+|
T Consensus        39 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~D  114 (145)
T 1z9m_A           39 DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVT----STPHELSISISNVALAD  114 (145)
T ss_dssp             CTTCCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEE----ECSSEEEEEECSCCGGG
T ss_pred             cceecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEec----CCCCeEEEEECCCChhh
Confidence            345667788899999999999999988788999994         33333333332211    12235679999999999


Q ss_pred             CeEEEEEEeCCCCceeeeeeEEEEcCCCC
Q psy14540         74 SGIYQCTATNRVGSQTHSADMRVYDAPGQ  102 (291)
Q Consensus        74 ~G~y~C~~~~~~~~~~~~~~l~v~~~~~~  102 (291)
                      +|.|+|.+.+. +.....+.|.|..+|..
T Consensus       115 sG~Y~C~~~n~-~~~~~~~~L~V~~~P~~  142 (145)
T 1z9m_A          115 EGEYTCSIFTM-PVRTAKSLVTVLGIPQK  142 (145)
T ss_dssp             CEEEEEEECSS-SCEEEEEEEEEECCCC-
T ss_pred             CEEEEEEEEcC-CCceEEEEEEEEeCCCC
Confidence            99999999988 88888889999886643

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.52  E-value=2.6e-13  Score=102.20  Aligned_cols=140  Identities=18%  Similarity=0.274  Sum_probs=83.6

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ...+.+|+.++|.|.+ .+.+  .+.+.|++....    ....          +.+..........+       ......
T Consensus        11 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~----~~~~----------~~~~~~~~~~~~~~-------~~~~~~   68 (256)
T 3umt_A           11 LELVKPGASVKISCKT-SGYTFTEYTMHWVKQSHG----KSLE----------WIGGINPNNGGTSY-------NQKFKG   68 (256)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTT----SCEE----------EEEEECTTTCCEEE-------CGGGTT
T ss_pred             ceEEcCCCCEEEEEEE-ecccccccEEEEEEECCC----CCcE----------EEEEEeccCCcccc-------cccccc
Confidence            3568899999999998 4655  679999984211    0000          00000000000000       000001


Q ss_pred             ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeC----CccCCceeEEEEec----------------CCCCCCCCccc
Q psy14540        193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNT----VASDNHSSNLRVNV----------------PPHIGPFTFGE  250 (291)
Q Consensus       193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~----~~~~~~~~~l~v~~----------------~p~~~~~~~~~  250 (291)
                      .+.+..  ......|.|.++..+|+|.|.|.+.+.    .+.......|.|..                +|.+...+...
T Consensus        69 r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  148 (256)
T 3umt_A           69 KAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSL  148 (256)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEE
T ss_pred             eEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeE
Confidence            111111  123456888999999999999998876    23334455677764                44444444433


Q ss_pred             -ccCCceEEEEEEeecCCCCceEEEEEC
Q psy14540        251 -LMEGVRTQVACVVQSGDLPLSLQWYKN  277 (291)
Q Consensus       251 -~~~g~~v~l~C~~~~~~p~~~v~W~~~  277 (291)
                       +.+|+.++|.|.+ .+.|.+.+.|+|+
T Consensus       149 ~v~~G~~v~L~C~~-~~~~~~~v~W~k~  175 (256)
T 3umt_A          149 SASLGERVSITCRA-SQDIGSNLNWLQQ  175 (256)
T ss_dssp             EECTTCCEEEEEEE-SSCCTTCEEEEEE
T ss_pred             EEECCCCEEEEEEE-ecCCCcEEEEEEE
Confidence             8999999999999 7788889999994

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.52  E-value=2.5e-13  Score=99.41  Aligned_cols=147  Identities=14%  Similarity=0.192  Sum_probs=86.3

Q ss_pred             cceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ....+.+|+.++|.|.+ .+.+  .+.+.|+++....  ...........+.     ........+.|......      
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~--~~~~l~~~~~~~~-----~~~~~~~~~R~~~~~~~------   73 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQPPGK--GLEWIAAISSGGS-----PYYNSALKSRLSINRDT------   73 (215)
T ss_dssp             CCCEECTTCCEEEEEEE-CSSCTTSCCEEEEEECTTS--CCEEEEEECTTCC-----EECCTTTGGGEEEEEET------
T ss_pred             CCeeecCCCcEEEEEEE-CCCcCCCCeEEEEEECCCC--CcEEEEEEcCCCC-----cEECCcccCcEEEEeeC------
Confidence            34678899999999998 4543  5789999853110  0000000000000     00000111222211100      


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEec----CCCCCCCC-cccccCCceEEEEEEe
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVACVV  263 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C~~  263 (291)
                             ......|.|.++..+|+|.|.|.+.+..+   .......|.|..    +|.+.... ...+.+|+.++|.|.+
T Consensus        74 -------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~  146 (215)
T 1c5d_H           74 -------SKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLV  146 (215)
T ss_dssp             -------TTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEE
T ss_pred             -------CCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEE
Confidence                   11245799999999999999999988642   122345677763    34444322 2236789999999999


Q ss_pred             ecCCCCc-eEEEEECCEEc
Q psy14540        264 QSGDLPL-SLQWYKNGLAI  281 (291)
Q Consensus       264 ~~~~p~~-~v~W~~~~~~l  281 (291)
                      .+..|.+ .|.|+++|..+
T Consensus       147 ~g~~P~p~~v~W~~~g~~~  165 (215)
T 1c5d_H          147 KGYFPEPVTVTWNSGALSS  165 (215)
T ss_dssp             EEEBSSCCEEEEGGGTTCC
T ss_pred             eeeEcCCcEEEEccCCccC
Confidence            5444777 99999998764

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=93.38  Aligned_cols=91  Identities=22%  Similarity=0.364  Sum_probs=71.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      |+.|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+. ..++.+.    ........|.|.+++.+|+|.|+|.
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEID----AQPGGYHVLTLRQLALKDSGTIYFE   88 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBC----CBTTTBCCBEECSCCTTTCEEEEEE
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEE----EcCCCEEEEEEcCCChhhCEEEEEE
Confidence            3467778888999999999999999998888999999998877 3333221    1123345699999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +    +.....+.|.|...|
T Consensus        89 ~----g~~~~~~~L~V~~~p  104 (115)
T 2cr6_A           89 A----GDQRASAALRVTEKP  104 (115)
T ss_dssp             E----TTEECCEEEEEECCS
T ss_pred             E----CCeeEEEEEEEECCC
Confidence            4    556677888888765

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.51  E-value=5.4e-14  Score=103.97  Aligned_cols=145  Identities=14%  Similarity=0.225  Sum_probs=82.7

Q ss_pred             cceeecCCCceEEEEEeeCCCCC----ceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPP----LTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~----~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      ....+.+|+.++|.|.+ .+.|.    +.+.|+++.  ...    .........+.  ..   ......+.|......  
T Consensus         8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~r~~~g~~~----~~l~~~~~~~~--~~---~~~~~~~R~~~~~~~--   75 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSF-SGFSIRTSKVGVSWIRQPSGKGL----EWLAHIYWDDD--KR---YNPSLESRLTISKDT--   75 (228)
T ss_dssp             CCSEECTTCCEEEEEEE-ESSCHHHHCCEEEEEEEETTCCC----EEEEEECTTSC--EE---ECTTTGGGEEEEEET--
T ss_pred             CceeecCCCeEEEEEEE-eCcccCCCceeEEEEEECCCCCe----EEEEEEecCCc--ee---eCcccCCcEEEEEcC--
Confidence            34678899999999999 46653    789999853  111    00000000000  00   000011222211100  


Q ss_pred             CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---------cCCceeEEEEec----CCCCCCCC-cccccC
Q psy14540        188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---------SDNHSSNLRVNV----PPHIGPFT-FGELME  253 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---------~~~~~~~l~v~~----~p~~~~~~-~~~~~~  253 (291)
                                 ......|.|.++..+|+|.|.|.+.+..+         .......|.|..    +|.+.... ...+.+
T Consensus        76 -----------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~  144 (228)
T 3bae_H           76 -----------SRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTT  144 (228)
T ss_dssp             -----------TTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----C
T ss_pred             -----------CCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccC
Confidence                       11246789999999999999999987653         112335677763    34443322 223678


Q ss_pred             CceEEEEEEeecCCCCc-eEEEEECCEEc
Q psy14540        254 GVRTQVACVVQSGDLPL-SLQWYKNGLAI  281 (291)
Q Consensus       254 g~~v~l~C~~~~~~p~~-~v~W~~~~~~l  281 (291)
                      |+.++|.|.+.+.+|.+ .|.|+++|..+
T Consensus       145 g~~~~l~C~~~g~~P~p~~v~W~~~~~~~  173 (228)
T 3bae_H          145 GSSVTLGCLVKGYFPEPVTLTWNSGSLSS  173 (228)
T ss_dssp             CSEEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred             CCCEEEEEEEccEeCCCEEEEEeeCCccc
Confidence            99999999994445776 99999998764

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.51  E-value=1.4e-13  Score=103.46  Aligned_cols=75  Identities=17%  Similarity=0.338  Sum_probs=54.3

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEec---------------CCCCCCCCccc-ccCCceEEEEEEee
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNV---------------PPHIGPFTFGE-LMEGVRTQVACVVQ  264 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~---------------~p~~~~~~~~~-~~~g~~v~l~C~~~  264 (291)
                      ..+|.|.++..+|+|.|.|.+.+..+.. .....|.|..               +|.+...+... +.+|+.++|.|.+ 
T Consensus        79 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-  157 (253)
T 3uzq_A           79 TAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRA-  157 (253)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEE-
T ss_pred             eEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEe-
Confidence            4568888999999999999998855332 3455666664               34444434333 8999999999999 


Q ss_pred             cCCCCc----eEEEEEC
Q psy14540        265 SGDLPL----SLQWYKN  277 (291)
Q Consensus       265 ~~~p~~----~v~W~~~  277 (291)
                      .+.|.+    .+.|+|+
T Consensus       158 ~~~~~~~~~~~v~W~r~  174 (253)
T 3uzq_A          158 SENVDRYGNSFMHWYQQ  174 (253)
T ss_dssp             SSCCEETTEECEEEEEE
T ss_pred             cCccccCCCcEEEEEEE
Confidence            777766    9999994

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.51  E-value=9.5e-14  Score=88.40  Aligned_cols=76  Identities=26%  Similarity=0.410  Sum_probs=49.5

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.................|.|..+..+|.|.|+|.+.|..|.
T Consensus        12 ~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~   87 (99)
T 1u2h_A           12 LMDQSVREGQDVIMSIRV-QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGA   87 (99)
T ss_dssp             CCCEEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCceEecCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCc
Confidence            345678899999999999 6889899999999998866544332222222334555555555555555555554443

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.51  E-value=6.6e-14  Score=89.31  Aligned_cols=76  Identities=25%  Similarity=0.399  Sum_probs=47.2

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.............+...|.|..+...|.|.|+|.+.|..|
T Consensus        11 ~p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (100)
T 2kdg_A           11 VPENMSIDEGRFCRMDFKV-SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAG   86 (100)
T ss_dssp             CCCCEEEETTCCEEEEEEC-EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCCEEecCCCEEEEEEEE-EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence            3455778899999999999 588999999999998886654332222222223444444444444444444444333

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.50  E-value=1.8e-13  Score=104.56  Aligned_cols=144  Identities=13%  Similarity=0.228  Sum_probs=81.2

Q ss_pred             cceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ....+.+|+.++|.|.+ .+.+  .+.+.|++++..    ....          +.+..........      .. ....
T Consensus        34 ~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~----~~~~----------~l~~~~~~~~~~~------~~-~~~~   91 (282)
T 1qok_A           34 GAELVRSGTSVKLSCTA-SGFNIKDSYMHWLRQGPE----QGLE----------WIGWIDPENGDTE------YA-PKFQ   91 (282)
T ss_dssp             CCEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTT----CCEE----------EEEEEETTTTEEE------EC-GGGB
T ss_pred             CCEEEeCCCeEEEEEec-cCCCCCCceEEEEEeCCC----CCcE----------EEEEEecCCCccc------cC-chhc
Confidence            34678899999999998 4554  578999996411    0000          0000000000000      00 0000


Q ss_pred             CceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCcc-----CCceeEEEEecCC---------------CCCCCCcc
Q psy14540        192 HSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVAS-----DNHSSNLRVNVPP---------------HIGPFTFG  249 (291)
Q Consensus       192 ~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-----~~~~~~l~v~~~p---------------~~~~~~~~  249 (291)
                      ..+.+..  .....+|.|.++..+|+|.|.|.+.|..+.     ......|.|..+|               .+...+..
T Consensus        92 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~  171 (282)
T 1qok_A           92 GKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAI  171 (282)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSE
T ss_pred             CcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCE
Confidence            0111111  112457888888888888888888876541     1233456666543               22222323


Q ss_pred             c-ccCCceEEEEEEeecCCCCceEEEEE--CCEEc
Q psy14540        250 E-LMEGVRTQVACVVQSGDLPLSLQWYK--NGLAI  281 (291)
Q Consensus       250 ~-~~~g~~v~l~C~~~~~~p~~~v~W~~--~~~~l  281 (291)
                      . +.+|+.++|.|.+ .+.| +.+.|+|  +|..+
T Consensus       172 ~~v~~G~~v~L~C~~-~~~~-~~v~W~k~~~g~~~  204 (282)
T 1qok_A          172 MSASPGEKVTITCSA-SSSV-SYMHWFQQKPGTSP  204 (282)
T ss_dssp             EEECTTCCEEEEEEE-SSCC-SCCEEEEECTTSCC
T ss_pred             EEEcCCCcEEEEEEe-cCCC-ceEEEEEECCCCCc
Confidence            3 8899999999999 7777 8999999  55544

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.50  E-value=7.6e-14  Score=92.51  Aligned_cols=96  Identities=23%  Similarity=0.343  Sum_probs=68.4

Q ss_pred             ceeecce-eeeecCCcEEEEEEecC--CCCCeeEEEECCeecCCC----eeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          5 LIYKFIQ-QTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLAGD----RFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         5 ~~~~~~~-~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      +.+.|.. +.+.+|+++.|.|.+.+  .+.+.+.|++++..+...    ...............+.|.|.+++.+|+|.|
T Consensus        10 v~i~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y   89 (122)
T 3s35_X           10 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY   89 (122)
T ss_dssp             EEEESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEE
T ss_pred             EEEcCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEE
Confidence            3444544 48999999999999987  445789999988744310    0000000000012346799999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEEEcCC
Q psy14540         78 QCTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +|.+.|..|.....+.|.|...|
T Consensus        90 ~C~a~n~~g~~~~~~~l~V~~~p  112 (122)
T 3s35_X           90 TCAASSGLMTKKNSTFVRVHEKP  112 (122)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEE
T ss_pred             EEEEccCCCceEEEEEEEEeccC
Confidence            99999999988889999998765

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=5.9e-14  Score=89.28  Aligned_cols=87  Identities=26%  Similarity=0.408  Sum_probs=68.4

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      .....|....+.+|+.++|.|.+.+.| +.+.|++++..+. ..++...         ...|.|.+++..|+|.|+|.+.
T Consensus         5 ~~~~~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~   74 (99)
T 2cr3_A            5 SSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT---------GEEVEVQDSVPADSGLYACVTS   74 (99)
T ss_dssp             SCSCCEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC---------SSEEEETTCCTTTCEEEEEEEE
T ss_pred             CCCCCCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE---------CCEEEEccCCHHHCEEEEEEEE
Confidence            334567778899999999999998876 6999999998776 2332221         1359999999999999999999


Q ss_pred             CCCCceeeeeeEEEEcCC
Q psy14540         83 NRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~  100 (291)
                      +..+.....+.|.|...+
T Consensus        75 n~~g~~~~~~~l~V~~~~   92 (99)
T 2cr3_A           75 SPSGSDTTYFSVNVSDAL   92 (99)
T ss_dssp             ETTEEEEEEEEECBCSCC
T ss_pred             eCCceEEEEEEEEEecCC
Confidence            988887777777776544

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.50  E-value=8.3e-14  Score=105.58  Aligned_cols=139  Identities=21%  Similarity=0.256  Sum_probs=84.0

Q ss_pred             CcceeecCCCceEEEEEeeC--CCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTK--GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~--~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      +..+.+.+|+.+.|.|.+..  +.+.+.+.|++++...............  .   ....                 +..
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~--~---~~~~-----------------~~~   69 (268)
T 3mj6_A           12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN--L---SVPT-----------------GRF   69 (268)
T ss_dssp             CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETT--E---EEEC-----------------GGG
T ss_pred             CCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCC--C---cccC-----------------ccc
Confidence            34577889999999999831  5677889999966433222111100000  0   0000                 000


Q ss_pred             CCceEE--EEeccceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEEEEecCCCCCCCCcccccCCceEEEEEEee--
Q psy14540        191 NHSSNL--RVNEYTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQ--  264 (291)
Q Consensus       191 ~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~--  264 (291)
                      .....+  .......+|.|.++..+|+|.|+|.+.+..+..  ...+.|.|.  |.  .+....+.+|+.++|.|.+.  
T Consensus        70 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~--~p~~~~v~~G~~v~L~C~~~~~  145 (268)
T 3mj6_A           70 QNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PE--EPRDLRVRVGDTTQMRCSIQST  145 (268)
T ss_dssp             TTTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CC--CCSEEEEETTCCEEECCBCEES
T ss_pred             cCceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--cc--CCCccccccCCcEEEEEEecCC
Confidence            000000  011224679999999999999999999876443  334444443  22  11223388999999999983  


Q ss_pred             cCCCCceEEEEEC
Q psy14540        265 SGDLPLSLQWYKN  277 (291)
Q Consensus       265 ~~~p~~~v~W~~~  277 (291)
                      .+.|.+.+.|+++
T Consensus       146 ~~~p~~~v~W~~~  158 (268)
T 3mj6_A          146 EEKRVTKVNWMFS  158 (268)
T ss_dssp             SSSCCCEEEEEEE
T ss_pred             CCCCccceEEEec
Confidence            4668899999994

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.50  E-value=2.1e-14  Score=94.43  Aligned_cols=97  Identities=27%  Similarity=0.477  Sum_probs=67.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCee-EeceEEeeccceEEE--EEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRF-VMGQYMSLHGDVISH--VNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~--l~i~~~~~~d~G~y~   78 (291)
                      ||.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ...............  |.+.+++..|+|.|+
T Consensus         9 pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~   88 (117)
T 2v9t_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV   88 (117)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEE
T ss_pred             CCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEE
Confidence            78899889899999999999999999999999999999988763210 000111112222222  223366899999999


Q ss_pred             EEEeCCCCce-eeeeeEEEEc
Q psy14540         79 CTATNRVGSQ-THSADMRVYD   98 (291)
Q Consensus        79 C~~~~~~~~~-~~~~~l~v~~   98 (291)
                      |.+.|..|.. ...+.+.+..
T Consensus        89 C~a~N~~G~~~s~~~~l~~~~  109 (117)
T 2v9t_A           89 CVARNYLGEAVSHDASLEVAA  109 (117)
T ss_dssp             EEEEETTEEEECCCEEEEEC-
T ss_pred             EEEEeCccceEeeeEEEEhhh
Confidence            9999988874 3445555554

>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A

Probab=99.50  E-value=3.1e-13  Score=96.37  Aligned_cols=142  Identities=18%  Similarity=0.224  Sum_probs=89.7

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----C--C-eeEeceEEee--ccceEEEEEEeecCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----G--D-RFVMGQYMSL--HGDVISHVNISSVRV   71 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~--~-~~~~~~~~~~--~~~~~~~l~i~~~~~   71 (291)
                      ++++.|..+.+.+|++++|.|.+.+.....+.|++.  |+...     .  . .....+....  .....++|+|.+++.
T Consensus         2 ~VtQ~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~   81 (200)
T 3rgv_A            2 SVTQMQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQE   81 (200)
T ss_dssp             EEECCCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCS
T ss_pred             ccEECCCEEEEeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcC
Confidence            356778888999999999999998644568999983  32111     0  0 0011111111  233457899999999


Q ss_pred             CCCeEEEEEEeCCC-CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540         72 EDSGIYQCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  150 (291)
Q Consensus        72 ~d~G~y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~  150 (291)
                      +|+|.|.|.+.... ......+.|.|......+.+.+.....       ....++|.|.+...+|...+.|.++|..+..
T Consensus        82 ~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~~~~-------~~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~  154 (200)
T 3rgv_A           82 IDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVYQLRD-------SKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT  154 (200)
T ss_dssp             TTCEEEEEEEESSSCCCCCCCEEEEEECCCSSCCCEEEEEEE-------SSSSSCEEEEEESCCTTCCCCCCSSTTCEEC
T ss_pred             ccCCCEEEEeccCcccccCcCEEEEEeCCCCCCCCeEEEccC-------CCCCceEEEEcccccCCeEeEeccCCcEEee
Confidence            99999999986421 112334567776542111111111111       1133789999988888779999999988765


Q ss_pred             CC
Q psy14540        151 DA  152 (291)
Q Consensus       151 ~~  152 (291)
                      ..
T Consensus       155 ~~  156 (200)
T 3rgv_A          155 DK  156 (200)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.49  E-value=2.9e-13  Score=102.01  Aligned_cols=146  Identities=18%  Similarity=0.271  Sum_probs=83.4

Q ss_pred             cceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ....+.+|+.++|.|.+ .+.+  .+.+.|+++...    ....          +.+..........|     ..  ...
T Consensus        14 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g----~~~~----------~l~~~~~~~~~~~~-----~~--~~~   71 (261)
T 2xqy_G           14 GAELVKPGASVKMSCKA-SGYSFTSYWMNWVKQRPG----RGLE----------WIGRIDPSDNETHY-----NQ--DFK   71 (261)
T ss_dssp             SEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTT----SCEE----------EEEEECTTTCCEEE-----CG--GGT
T ss_pred             CCEEEcCCCCEEEEEEe-CCcccCCceEEEEEeCCC----CCcE----------EEEEEecCCCceee-----CC--ccC
Confidence            45678899999999999 4555  578999986310    0000          00000000000000     00  000


Q ss_pred             CceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEec----CCCCCCCC-cccccCCceEEEEE
Q psy14540        192 HSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVAC  261 (291)
Q Consensus       192 ~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C  261 (291)
                      ..+.+..  ......|.|.++..+|+|.|.|.+.+..+   .......|.|..    +|.+.... ...+.+|+.++|.|
T Consensus        72 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C  151 (261)
T 2xqy_G           72 DKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGC  151 (261)
T ss_dssp             TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEE
T ss_pred             CcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEE
Confidence            1111111  12346799999999999999999988532   122334677764    34333222 22367899999999


Q ss_pred             EeecCCCCc-eEEEEECCEEc
Q psy14540        262 VVQSGDLPL-SLQWYKNGLAI  281 (291)
Q Consensus       262 ~~~~~~p~~-~v~W~~~~~~l  281 (291)
                      .+.+.+|.+ .|.|++++..+
T Consensus       152 ~~~g~~P~~i~v~W~k~g~~~  172 (261)
T 2xqy_G          152 LVKGYFPEPVTLTWNSGSLSS  172 (261)
T ss_dssp             EEEEEBSSCCEEEEGGGTCCT
T ss_pred             EEEeEeCCCCEEEEecCCCcC
Confidence            994445765 99999999865

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.49  E-value=2.2e-13  Score=89.63  Aligned_cols=95  Identities=16%  Similarity=0.266  Sum_probs=68.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCe-eEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDR-FVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|...... .  ..+...|.|.+.+.|.+.+.|+++|..+.... ..... ..........|.|.+++..|+|.|+|.
T Consensus         8 pP~i~~~~~~-~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~   83 (118)
T 1wwc_A            8 PPRVVSLEEP-E--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY-YQEGEISEGCLLFNKPTHYNNGNYTLI   83 (118)
T ss_dssp             CCCCCCCCCC-C--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEE-EECSSEEEEEEEEESCCGGGCEEEEEE
T ss_pred             CCceeccCCC-e--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEE-eccCccccEEEEECCCChhcCEEEEEE
Confidence            5665544322 2  23667899999999999999999999887432 22211 111112346799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +.|..|.....+.+.|...|
T Consensus        84 a~N~~G~~~~~~~l~v~~~P  103 (118)
T 1wwc_A           84 AKNPLGTANQTINGHFLKEP  103 (118)
T ss_dssp             EEETTEEEEEEEEECCSCCC
T ss_pred             EECCCCeEeeEEEEEEccCC
Confidence            99999988888888777655

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.49  E-value=1.2e-13  Score=89.40  Aligned_cols=89  Identities=21%  Similarity=0.447  Sum_probs=58.6

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..........                                
T Consensus        15 ~~~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~--------------------------------   61 (108)
T 3kvq_A           15 GNLENQTTSIGESIEVSCTA-SGNPPPQIMWFKDNETLVEDSGIVLKD--------------------------------   61 (108)
T ss_dssp             SCCCCEEEETTCCEEEECBC-C----CCEEEEESSSBCCCBTTEEEET--------------------------------
T ss_pred             cCCCCeEEeCCCeEEEEEEC-cCcCCCeEEEEECCeEcccCCCeEEeC--------------------------------
Confidence            33456788899999999999 688999999999998775543332211                                


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH  242 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~  242 (291)
                                ....|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus        62 ----------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           62 ----------GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             ----------TTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC---
T ss_pred             ----------CCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeCCCc
Confidence                      134677788888888888888888888877788888876654

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.49  E-value=2.3e-13  Score=108.16  Aligned_cols=130  Identities=12%  Similarity=0.245  Sum_probs=85.0

Q ss_pred             ecCCCceEEEEEeeCCC---CC-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        118 VHSGDRAGVQCLVTKGD---PP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~~---p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      +..|+.++|.|.+. +.   |. ..|.|++++..+......               .......|.|.-            
T Consensus       180 ~~~g~~v~L~C~~~-g~~P~p~~~~v~W~k~~~~~~~~~~~---------------~~~~~~~~~~~~------------  231 (376)
T 2aty_A          180 LTITLTPKVTCVVV-DISKDDPEVQFSWFVDDVEVHTAQTQ---------------PREEQFNSTFRS------------  231 (376)
T ss_pred             eeeCCeeEEEEEEe-ccccCCCccEEEEEECCccccCcccC---------------CCCcccCCcEEE------------
Confidence            67899999999995 54   32 479999998655321100               000111222221            


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEE----EEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL----RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL  268 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p  268 (291)
                              ...|.|..+..+|+|.|+|.+.+..+.......+    .+..+|.+...+... ...|+.++|.|.+.+.+|
T Consensus       232 --------~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P  303 (376)
T 2aty_A          232 --------VSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFP  303 (376)
T ss_pred             --------EEEEEechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeEC
Confidence                    3457888888889999999998876543332233    344567776655544 556899999999944445


Q ss_pred             -CceEEEEECCEEccC
Q psy14540        269 -PLSLQWYKNGLAISQ  283 (291)
Q Consensus       269 -~~~v~W~~~~~~l~~  283 (291)
                       .+.|+|+|||.++..
T Consensus       304 ~~i~v~W~k~g~~~~~  319 (376)
T 2aty_A          304 EDITVEWQWNGQPAEN  319 (376)
T ss_pred             CCcEEEEEECCEECCC
Confidence             469999999998743

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.49  E-value=6.1e-13  Score=100.13  Aligned_cols=145  Identities=15%  Similarity=0.192  Sum_probs=84.1

Q ss_pred             cCCcceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEecc-CCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIRSS-GEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ..+..+.+.+|+.++|.|.+... .+.+.+.|++.....  ......... ....  .   .......+.|.-...    
T Consensus        11 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~~~--~---~~~~~~~~R~~~~~~----   79 (256)
T 3juy_B           11 VQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQ--RFEWMGWINPYNGN--K---EFSAKFQDRVTFTAD----   79 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CCEEEEEEETTTTE--E---EECTTTTTTEEEEEE----
T ss_pred             EecCCceecCCCeEEEEEEeecccccCceEEEEEECCCC--CcEEEEEEEcCCCc--E---eecccCcceEEEEEe----
Confidence            34456788999999999998432 367799999843110  000000000 0000  0   000011112211100    


Q ss_pred             CCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC------------CccCCceeEEEEecCC---------------
Q psy14540        189 SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT------------VASDNHSSNLRVNVPP---------------  241 (291)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~------------~~~~~~~~~l~v~~~p---------------  241 (291)
                               ......+|.|.++..+|+|.|.|.+.+.            .........|.|..++               
T Consensus        80 ---------~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~  150 (256)
T 3juy_B           80 ---------TSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEI  150 (256)
T ss_dssp             ---------TTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCC
T ss_pred             ---------cCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCccee
Confidence                     1122457889999999999999999886            2333445567776532               


Q ss_pred             CCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEE
Q psy14540        242 HIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYK  276 (291)
Q Consensus       242 ~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~  276 (291)
                      .+...+... +.+|+.++|.|.+ .+.|. +.+.|+|
T Consensus       151 ~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k  186 (256)
T 3juy_B          151 VLTQAPGTLSLSPGERATFSCRS-SHSIRSRRVAWYQ  186 (256)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEE-SSCCTTCCEEEEE
T ss_pred             EEEecCCeEEEeCCCCEEEEEEE-CCCcCCeeEEEEE
Confidence            233323333 8999999999999 66665 8999998

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.49  E-value=2.4e-13  Score=102.32  Aligned_cols=140  Identities=11%  Similarity=0.211  Sum_probs=81.2

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+..+.+.+|+.++|.|.+ .+.|.+.+.|++.....  ............. ..       ...+.|...         
T Consensus         9 ~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~~-~~-------~~~~r~~~~---------   68 (256)
T 3tf7_C            9 PDARVTVSEGASLQLRCKY-SYSATPYLFWYVQYPRQ--GPQMLLKYYSGDP-VV-------QGVNGFEAE---------   68 (256)
T ss_dssp             SCSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTS--CCEEEEEECSSCS-EE-------ECSTTCEEE---------
T ss_pred             cCceEEecCCCeEEEEEEe-CCCCCceEEEEEECCCC--CeEEEEEEccCCc-cc-------ccCCCeEEE---------
Confidence            3455788899999999999 57789999999842110  0000000000000 00       000111110         


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc----CCceeEEEEec--------------------CCCCCCCC
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS----DNHSSNLRVNV--------------------PPHIGPFT  247 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~----~~~~~~l~v~~--------------------~p~~~~~~  247 (291)
                          ........+|.|.++..+|+|.|.|.+.+..+.    ......|.|..                    +|.+...+
T Consensus        69 ----~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p  144 (256)
T 3tf7_C           69 ----FSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSP  144 (256)
T ss_dssp             ----EETTTTEEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESC
T ss_pred             ----EcCCCCEEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecC
Confidence                011123456888888888888888888776431    22234555554                    34444444


Q ss_pred             ccc-ccCCceEEEEEEeecCCCCceEEEEEC
Q psy14540        248 FGE-LMEGVRTQVACVVQSGDLPLSLQWYKN  277 (291)
Q Consensus       248 ~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~  277 (291)
                      ... +.+|+.++|.|.+ .+. .+.+.|+|.
T Consensus       145 ~~~~v~~G~~v~L~C~~-~~~-~~~v~W~k~  173 (256)
T 3tf7_C          145 RNKVTVTGENVTLSCRQ-TNS-HNYMYWYRQ  173 (256)
T ss_dssp             SEEEEETTCCEEECEEE-CSC-CSEEEEEEE
T ss_pred             CEEEEeCCCcEEEEEEc-CCC-ceEEEEEEE
Confidence            444 7799999999999 555 668999983

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.49  E-value=1e-14  Score=96.76  Aligned_cols=97  Identities=28%  Similarity=0.441  Sum_probs=76.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCe-eEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCCC-eE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVEDS-GI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~-G~   76 (291)
                      ||.|.. +....+.+|+.+.|.|.+.+.|.+. +.|++++..+..   .++.... ........+.|.|.+++..|. |.
T Consensus        14 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~~G~   91 (122)
T 2cry_A           14 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET-ISTEEGVISTLTISNIVRADFQTI   91 (122)
T ss_dssp             SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEE-EEETTEEEEEEECTTCCHHHHHSC
T ss_pred             CCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEE-ecCCCceEEEEEEcCCChhhCCce
Confidence            688877 8888999999999999999988887 999999988763   2222211 111222357899999999999 99


Q ss_pred             EEEEEeCCCCceeeeeeEEEEcCC
Q psy14540         77 YQCTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        77 y~C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      |+|.+.|..|.....+.|.|...+
T Consensus        92 Y~C~a~N~~G~~~~~~~l~V~~~~  115 (122)
T 2cry_A           92 YNCTAWNSFGSDTEIIRLKEQGSE  115 (122)
T ss_dssp             EEEEEECSSCEEEEEECCCCSCSS
T ss_pred             EEEEEECCCCeEEEEEEEEECCCC
Confidence            999999999998888887776543

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.49  E-value=2.1e-13  Score=102.34  Aligned_cols=148  Identities=13%  Similarity=0.265  Sum_probs=85.1

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+..+.+.+|+.++|.|.+ . .+.+.+.|+++...-    ...          +.+.....   +.+    ..  +...
T Consensus         9 ~p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~----~~~----------~l~~~~~~---~~~----~~--~~~~   63 (252)
T 1oga_E            9 SPKYLFRKEGQNVTLSCEQ-N-LNHDAMYWYRQDPGQ----GLR----------LIYYSQIV---NDF----QK--GDIA   63 (252)
T ss_dssp             SCSEEEEETTCCEEECCEE-C-SCCSEEEEEEECTTC----CEE----------EEEEESST---TCC----EE--CSSC
T ss_pred             cCCeEEEcCCCcEEEEEEe-C-CCCCEEEEEEECCCC----CeE----------EEEEEccC---ccc----cC--CccC
Confidence            3455788999999999998 3 357899999853110    000          00000000   000    00  0000


Q ss_pred             CceEEEE-eccceEEEEeeeecCCCeeEEEEeeeCC---ccCCceeEEEEec------CCCCCCCCcc--cccCCceEEE
Q psy14540        192 HSSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNTV---ASDNHSSNLRVNV------PPHIGPFTFG--ELMEGVRTQV  259 (291)
Q Consensus       192 ~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~---~~~~~~~~l~v~~------~p~~~~~~~~--~~~~g~~v~l  259 (291)
                      ..+.+.. ......|.|.++..+|+|.|.|.+.+..   ........|.|..      +|.+......  .+.+|+.++|
T Consensus        64 ~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L  143 (252)
T 1oga_E           64 EGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATL  143 (252)
T ss_dssp             TTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred             CcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEE
Confidence            0111110 0124578899999999999999998752   1112233456543      4544433222  1557999999


Q ss_pred             EEEeecCCCC-ceEEEEECCEEccCC
Q psy14540        260 ACVVQSGDLP-LSLQWYKNGLAISQP  284 (291)
Q Consensus       260 ~C~~~~~~p~-~~v~W~~~~~~l~~~  284 (291)
                      .|.+.+.+|. +.|.|+|||..+..+
T Consensus       144 ~C~~~g~~P~~~~v~W~~~g~~l~~~  169 (252)
T 1oga_E          144 VCLATGFYPDHVELSWWVNGKEVHSG  169 (252)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEECSS
T ss_pred             EEEEeeEcCCCcEEEEEECCEECCCC
Confidence            9999444565 599999999988654

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.9e-13  Score=87.93  Aligned_cols=90  Identities=27%  Similarity=0.390  Sum_probs=60.6

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .++.+.....+..                          
T Consensus        14 ~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~--------------------------   66 (110)
T 2dm2_A           14 KLKHYKIFEGMPVTFTCRV-AGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC--------------------------   66 (110)
T ss_dssp             CCCCEEEETTCCEEEEEEB-CCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEE--------------------------
T ss_pred             cCcCeEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCCCeEEEEECCCcEE--------------------------
Confidence            3455788999999999999 68999999999999887652 3333332222222                          


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                                   .|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|
T Consensus        67 -------------~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~  104 (110)
T 2dm2_A           67 -------------SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN  104 (110)
T ss_dssp             -------------EEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEECCS
T ss_pred             -------------EEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEECCC
Confidence                         35555556666666666666666666666666666554

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=4.1e-13  Score=88.36  Aligned_cols=87  Identities=16%  Similarity=0.367  Sum_probs=59.3

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      .....+.+|+.+.|.|.+ .|.|.+.+.|++++..+.. .+..+.. ...                              
T Consensus        31 ~~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~-~~~~~~~-~~~------------------------------   77 (118)
T 2e7c_A           31 RQTYIRKVGEQLNLVVPF-QGKPRPQVVWTKGGAPLDT-SRVHVRT-SDF------------------------------   77 (118)
T ss_dssp             SSCEEEESSSCEEEEEEE-EEESCCEEEEEETTEECCC-SSCEEEE-CSS------------------------------
T ss_pred             CCCEEEECCCEEEEEEEE-ccCCCCEEEEEECCEECCC-CcEEEEE-CCC------------------------------
Confidence            355788899999999999 6899999999999988852 2222211 111                              


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                               ...|.|.++...|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus        78 ---------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           78 ---------DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             ---------EEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred             ---------eEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence                     2345666666666666666666666666666666666554

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.48  E-value=2e-13  Score=86.71  Aligned_cols=86  Identities=22%  Similarity=0.382  Sum_probs=64.8

Q ss_pred             Cccee-ecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          3 PQLIY-KFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         3 p~~~~-~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      |.+.. .+....+.+|++++|.|.+. +.|.+.+.|++++.........     ...    .+|.|.+++.+|+|.|+|.
T Consensus        10 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~-----~~~----~~L~i~~v~~~D~G~Y~C~   80 (98)
T 1gl4_B           10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-----DFN----GILTIRNVQPSDAGTYVCT   80 (98)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE-----EET----TEEEECSCCGGGCEEEEEE
T ss_pred             cEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceee-----cCC----CEEEEeCCChhhCEEEEEE
Confidence            34443 44667899999999999998 5888999999975443322111     011    2599999999999999999


Q ss_pred             EeCCCCceeeeeeEEEE
Q psy14540         81 ATNRVGSQTHSADMRVY   97 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~   97 (291)
                      +.|..|.....+.|.|.
T Consensus        81 a~n~~g~~~~~~~l~V~   97 (98)
T 1gl4_B           81 GSNMFAMDQGTATLHVQ   97 (98)
T ss_dssp             EECSSCEEEEEEEEEEC
T ss_pred             ecCCCCccccEEEEEEe
Confidence            99998888877777764

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.48  E-value=4.9e-13  Score=98.91  Aligned_cols=145  Identities=19%  Similarity=0.183  Sum_probs=84.6

Q ss_pred             CcceeecCCCceEEEEEeeCCC--CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCC-----CCceeEEEEEEe
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGD--PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST-----GHSGNYTCVASN  185 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-----~d~g~y~C~~~~  185 (291)
                      +..+.+.+|+.++|.|.+ .+.  +...+.|++....-  .....          +....-..     ...+.|..... 
T Consensus         8 p~~v~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~--~~~~l----------~~~~~~~~~~~~~~~~~R~~~~~~-   73 (230)
T 1ypz_F            8 EISISRPRDETAQISCKV-FIESFRSVTIHWYRQKPNQ--GLEFL----------LYVLATPTHIFLDKEYKKMEASKN-   73 (230)
T ss_dssp             CSEEEEETTSCEEEEEEE-CCGGGGGCCEEEEEECTTT--CCEEE----------EEECSSCCCEEEESSSSEEEEEEC-
T ss_pred             CCEEEEeCCCcEEEEEEe-eccccCccEEEEEEECCCC--CCEEE----------EEEecCCeeecCcccCCeEEEEEc-
Confidence            445778899999999998 443  56789999853110  00000          00000000     01112211100 


Q ss_pred             cCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC--Cc--cCCceeEEEEec---------CCCCCCCCc-c-c
Q psy14540        186 TVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT--VA--SDNHSSNLRVNV---------PPHIGPFTF-G-E  250 (291)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~--~~--~~~~~~~l~v~~---------~p~~~~~~~-~-~  250 (291)
                                  .......|.|.++..+|+|.|.|.+.+.  ..  .......|.|..         +|....... . .
T Consensus        74 ------------~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~  141 (230)
T 1ypz_F           74 ------------PSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAE  141 (230)
T ss_dssp             ------------CTTTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHH
T ss_pred             ------------CCCCEEEEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchh
Confidence                        0012457999999999999999999874  11  122334677751         233332221 1 1


Q ss_pred             ccCCceEEEEEEeecCCCC-ceEEEEE-CCEEccC
Q psy14540        251 LMEGVRTQVACVVQSGDLP-LSLQWYK-NGLAISQ  283 (291)
Q Consensus       251 ~~~g~~v~l~C~~~~~~p~-~~v~W~~-~~~~l~~  283 (291)
                      +..|+.++|.|.+.+.+|. +.|.|++ ||+.|.+
T Consensus       142 v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~  176 (230)
T 1ypz_F          142 TNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILD  176 (230)
T ss_dssp             HHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCC
T ss_pred             hccCCcceEEEEEeeecCCCeEEEEEccCCeEccc
Confidence            5679999999999545575 6999999 8887753

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.48  E-value=3.9e-13  Score=89.27  Aligned_cols=93  Identities=16%  Similarity=0.318  Sum_probs=70.2

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeec---------CCCeeEeceEEeeccceEEEEEEeecCCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---------AGDRFVMGQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      .++..+....+.+|++++|.|.+.+.+.+.+.|++++..+         ...++...    .......+|.|.+++.+|+
T Consensus         3 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~Ds   78 (124)
T 3rbg_A            3 SLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLL----HHSANQLSITVPNVTLQDE   78 (124)
T ss_dssp             -CCCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEE----EEETTEEEEEESSCCGGGC
T ss_pred             cccCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEE----eCCCCEEEEEECCCChHHC
Confidence            3556778889999999999999998888999999865432         12222221    1223357899999999999


Q ss_pred             eEEEEEEeCCCCceeeeeeEEEEcCCC
Q psy14540         75 GIYQCTATNRVGSQTHSADMRVYDAPG  101 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~~~~l~v~~~~~  101 (291)
                      |.|+|.+.+. +.....+.|.|...|.
T Consensus        79 G~Y~C~a~n~-g~~~~~~~l~V~~~P~  104 (124)
T 3rbg_A           79 GVYKCLHYSD-SVSTKEVKVIVLATMK  104 (124)
T ss_dssp             EEEEEEEESS-SEEEEEEEEEEECC--
T ss_pred             EEEEEEEEcC-CCCcEEEEEEEEeCCC
Confidence            9999999988 8888888999987663

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.48  E-value=1.4e-12  Score=94.48  Aligned_cols=164  Identities=17%  Similarity=0.244  Sum_probs=93.7

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--Ceec-------C-CCeeEeceEEe--eccceEEEEEEeecCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPL-------A-GDRFVMGQYMS--LHGDVISHVNISSVRV   71 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~-------~-~~~~~~~~~~~--~~~~~~~~l~i~~~~~   71 (291)
                      .+.+.|..+.+.+|++++|.|.+.+.....+.||+.  ++..       . .......++..  ......++|+|.+++.
T Consensus         5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   84 (210)
T 2eys_A            5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL   84 (210)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             eEEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCc
Confidence            456668888999999999999998755568999984  2211       1 00001111111  1233457899999999


Q ss_pred             CCCeEEEEEEeCCC---Cc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCE
Q psy14540         72 EDSGIYQCTATNRV---GS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL  146 (291)
Q Consensus        72 ~d~G~y~C~~~~~~---~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~  146 (291)
                      +|+|.|.|.+.+..   ..  ......|.|......+.+.......       ....++|.|.+...+|.+.+.+-..  
T Consensus        85 ~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~-------~~~~~tl~Cl~~gf~P~~~v~~~~~--  155 (210)
T 2eys_A           85 SDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRD-------SKSSDKSVCLFTDFDSQTNVSQSKD--  155 (210)
T ss_dssp             GGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEECC-------CSSSSCEEEEEESCCTTCCCCCCSS--
T ss_pred             ccCceEEEEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecCC-------CCCCceEEEEcccccCCcEeccccC--
Confidence            99999999998632   11  1233567776542211111111111       1227899999976677655422111  


Q ss_pred             eccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540        147 PILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN  185 (291)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  185 (291)
                           .. ....   ....|.+..+...+.|.|.|.+.+
T Consensus       156 -----~~-~~~t---~~~~l~~~~~~~~~~~~~~w~~~~  185 (210)
T 2eys_A          156 -----SD-VYIT---DKCVLDMRSMDFKSNSAVAWSNKS  185 (210)
T ss_dssp             -----TT-EEEC---CCEEEEETTTTEEEEEEEEEECST
T ss_pred             -----cc-eEcc---CchhcchhcccccccchhhccCCC
Confidence                 00 0000   123455656666666677775544

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.48  E-value=4.4e-13  Score=101.31  Aligned_cols=135  Identities=13%  Similarity=0.180  Sum_probs=80.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCC------CceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEE
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP------PLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS  184 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p------~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  184 (291)
                      +..+.+.+|+.++|.|.+ .+.+      .+.+.|+++.  ...    .            +.+...   .  .+     
T Consensus        12 p~~v~v~~G~~v~L~C~~-~~~~~~~~~~~~~v~W~k~~~g~~~----~------------~l~~~~---~--~~-----   64 (264)
T 2gjj_A           12 PSSLPVSVGEKVTMTCKS-SQTLLYSNNQKNYLAWYQQKPGQSP----K------------LLISWA---F--TR-----   64 (264)
T ss_dssp             CSEEEEETTCCEEEEEEE-SSCCEETTTTEECEEEEEECTTSCC----E------------EEEETT---T--EE-----
T ss_pred             CCeEEecCCCcEEEEeEc-CCcccccccCCceEEEEEECCCCCc----E------------EEEEec---c--cC-----
Confidence            445778899999999998 5666      6789999852  111    0            000000   0  00     


Q ss_pred             ecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCC------------------CCC-
Q psy14540        185 NTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPP------------------HIG-  244 (291)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p------------------~~~-  244 (291)
                       ..+ ....+.+........|.|.++..+|+|.|.|.+.+..+. ......|.|..+|                  .+. 
T Consensus        65 -~~~-~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (264)
T 2gjj_A           65 -KSG-VPDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQL  142 (264)
T ss_dssp             -CTT-SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEE
T ss_pred             -CCC-CCccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEE
Confidence             000 011122222223457888888888888888888776431 2233456666543                  221 


Q ss_pred             -CCCcccccCCceEEEEEEeecCCCC--ceEEEEEC
Q psy14540        245 -PFTFGELMEGVRTQVACVVQSGDLP--LSLQWYKN  277 (291)
Q Consensus       245 -~~~~~~~~~g~~v~l~C~~~~~~p~--~~v~W~~~  277 (291)
                       ..+...+.+|+.++|.|.+ .+.+.  +.+.|+|+
T Consensus       143 ~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~  177 (264)
T 2gjj_A          143 QQSGPEVVKTGASVKISCKA-SGYSFTGYFINWVKK  177 (264)
T ss_dssp             EECCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEE
T ss_pred             eCCCCEEEcCCCcEEEEEEE-eCCccCCeEEEEEEE
Confidence             1222238999999999999 66653  79999997

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=3.8e-13  Score=85.74  Aligned_cols=86  Identities=29%  Similarity=0.505  Sum_probs=57.0

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .+.....                               
T Consensus        13 ~~p~~~~v~~G~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~-------------------------------   60 (100)
T 2edj_A           13 QGPANQTLAVDGTALLKCKA-TGDPLPVISWLKEGFTFPGRDPRATIQE-------------------------------   60 (100)
T ss_dssp             ECCCCEEEESSSEEEECCEE-ECSSCCEEEEEESSSEESSSCSSCEECT-------------------------------
T ss_pred             eCcCCEEEcCCCcEEEEEEE-EEcCCCEEEEEECCEECCCCCCCEEEcC-------------------------------
Confidence            34455778899999999999 58999999999998877532 1221111                               


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP  240 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~  240 (291)
                                  ...|.|.++..+|+|.|+|.|.|..|.....+.|.|..+
T Consensus        61 ------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           61 ------------QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             ------------TCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEESC
T ss_pred             ------------CCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEecC
Confidence                        124555666666666666666666666666666666544

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.47  E-value=4.8e-13  Score=84.73  Aligned_cols=77  Identities=13%  Similarity=0.241  Sum_probs=51.2

Q ss_pred             CCcceeecCCCceEEEEEeeCCC-CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGD-PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      .+....+.+|+.+.|.|.+ .+. |.+.+.|++++..+....+..+... .....|.|.++...|.|.|+|.+.|..|..
T Consensus         7 ~~~~~~v~~G~~v~l~C~~-~g~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~   84 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKI-ENYDQSTQVTWYFGVRQLENSEKYEITYE-DGVAILYVKDITKLDDGTYRCKVVNDYGED   84 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEE-ESCCTTCEEEEEETTEECCSSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             cCcCEEEcCCCcEEEEEEE-eccCCCCEEEEEECCEECcCCCCEEEEEc-CCeEEEEEecCChhhCeEEEEEEECCCCeE
Confidence            3455788999999999999 575 8899999999998876655544321 123345555555555555555555544433

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.47  E-value=1.7e-13  Score=103.34  Aligned_cols=145  Identities=14%  Similarity=0.154  Sum_probs=78.5

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC-C
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD-N  191 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~  191 (291)
                      +..+.+.+|+.++|.|.+ .+.+.+.+.|++....-  .....          +...  .......+      ..+.. .
T Consensus         9 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~--~~~~~----------~~~~--~~~~~~~~------~~~~~~r   67 (259)
T 3omz_A            9 TKSVIRQTGSSAEITCDL-AEGSTGYIHWYLHQEGK--APQRL----------LYYD--SYTSSVVL------ESGISPG   67 (259)
T ss_dssp             --CEEEETTCCEEEECCC------CEEEEEEECTTS--CCEEE----------EEEE--TTTCCEEE------CTTCCBT
T ss_pred             CceeEecCCCcEEEEEEE-ccCCCcEEEEEEECCCC--CcEEE----------EEEe--cCcCcccc------CCCCCcc
Confidence            345788899999999998 67778899999832100  00000          0000  00000000      00000 0


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEecC-----------------CCCCCCCccc-
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVNVP-----------------PHIGPFTFGE-  250 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~~~-----------------p~~~~~~~~~-  250 (291)
                      ............+|.|.++..+|+|.|.|.+.+..+   .......|.|..+                 |.+...+... 
T Consensus        68 ~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~  147 (259)
T 3omz_A           68 KYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVS  147 (259)
T ss_dssp             TEEEECC--CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEE
T ss_pred             eeEeecCCCCeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEE
Confidence            000001112345788888888999999998887654   3344455666552                 2333333333 


Q ss_pred             ccCCceEEEEEEeecCCCCceEEEEECC
Q psy14540        251 LMEGVRTQVACVVQSGDLPLSLQWYKNG  278 (291)
Q Consensus       251 ~~~g~~v~l~C~~~~~~p~~~v~W~~~~  278 (291)
                      +.+|+.++|.|.+....|.+.+.|+|++
T Consensus       148 v~~G~~v~L~C~~~~~~~~~~v~W~k~~  175 (259)
T 3omz_A          148 MPVRKAVTLNCLYETSWWSYYIFWYKRL  175 (259)
T ss_dssp             EETTCCEEECCEEECCCSSCEEEEEEEC
T ss_pred             EcCCCCEEEEEECCCccCCceEEEeeeC
Confidence            8999999999998333478899999853

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.47  E-value=2.9e-13  Score=86.80  Aligned_cols=74  Identities=24%  Similarity=0.399  Sum_probs=48.1

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+..+.... ....|.|.++..+|.|.|+|.+.|..|
T Consensus        15 ~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G   88 (103)
T 3qp3_A           15 MRSHRVPCGQNTRFILNV-QSKPTAEVKWYHNGVELQESSKIHYTNTS-GVLTLEILDCHTDDSGTYRAVCTNYKG   88 (103)
T ss_dssp             CCCEEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEET-TEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CcceEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCCCEEEEECC-CEEEEEEcCCCcccCEEEEEEEEeCCC
Confidence            455778899999999999 68899999999999988766554433221 123344444444444444444444433

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3.6e-13  Score=88.64  Aligned_cols=89  Identities=24%  Similarity=0.359  Sum_probs=67.6

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .+....                                
T Consensus        13 ~~p~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~g~~~~~~~~~~~~~--------------------------------   59 (118)
T 2eo9_A           13 QGPVNQTVAVDGTFVLSCVA-TGSPVPTILWRKDGVLVSTQDSRIKQL--------------------------------   59 (118)
T ss_dssp             BCCCCEEEETTCEEEEECBC-CCSSCCEEEEEESSSBCCTTSTTEEEE--------------------------------
T ss_pred             cCCCCEEEcCCCeEEEEEEE-EecCCCEEEEEECCEECcCCCCeEEEc--------------------------------
Confidence            34556788999999999999 78999999999998877432 111111                                


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI  243 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~  243 (291)
                                 ....|.|.++..+|+|.|+|.|.|..|.....+.|.|..++..
T Consensus        60 -----------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           60 -----------ENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP  102 (118)
T ss_dssp             -----------ETTEEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCSCC
T ss_pred             -----------cCCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCCCC
Confidence                       0236888888888999999999998888777888888876543

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.47  E-value=2.5e-13  Score=101.97  Aligned_cols=80  Identities=16%  Similarity=0.279  Sum_probs=49.6

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCcc-------------CCceeEEEEec----CCCCCCCC-cccccCCceEEEEEEe
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVAS-------------DNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVACVV  263 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~-------------~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C~~  263 (291)
                      ...|.|.++..+|+|.|.|.+.+..+.             ......|.|..    +|.+.... ...+.+|+.++|.|.+
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~  157 (257)
T 3bn9_D           78 TLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  157 (257)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEE
T ss_pred             EEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEE
Confidence            467999999999999999999886531             11334677764    35444332 2236789999999999


Q ss_pred             ecCCCCc-eEEEEECCEEc
Q psy14540        264 QSGDLPL-SLQWYKNGLAI  281 (291)
Q Consensus       264 ~~~~p~~-~v~W~~~~~~l  281 (291)
                      .+.+|.+ .|.|+++|..+
T Consensus       158 ~g~~P~pi~v~W~k~g~~~  176 (257)
T 3bn9_D          158 KDYFPEPVTVSWNSGALTS  176 (257)
T ss_dssp             EEEBSSCCEEEETTTTCCS
T ss_pred             eeEECCCcEEEEeeCCCcC
Confidence            5445776 99999999764

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.47  E-value=2.1e-14  Score=105.06  Aligned_cols=134  Identities=16%  Similarity=0.269  Sum_probs=83.4

Q ss_pred             CcceeecCCCceEEEEEeeCCCCC---ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPP---LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      +....+.+|+.++|.|.+ .+.+.   +.+.|  ++..+...  ..             ........|.|.         
T Consensus        11 P~~~~v~~G~~v~L~C~~-~g~~p~~~~~v~W--~~~~~~~~--~~-------------~~~~~~~~g~~~---------   63 (214)
T 1ow0_A           11 PALEDLLLGSEANLTCTL-TGLRDASGVTFTW--TPSSGKSA--VQ-------------GPPERDLCGCYS---------   63 (214)
T ss_dssp             CCHHHHHHCSSCCCEEEE-TTCCSCCCCCCCB--SSCSSCCC--EE-------------CCCCCCSTTCCC---------
T ss_pred             cChHHhccCCCcEEEEEE-eeeECCCCeEEEE--cCCCCCCc--cc-------------CCceECCCCcEE---------
Confidence            444567899999999999 45543   68999  44433211  00             000001122221         


Q ss_pred             CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEE---EecCCCCCCCCcc--cccCCceEEEEEEee
Q psy14540        190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR---VNVPPHIGPFTFG--ELMEGVRTQVACVVQ  264 (291)
Q Consensus       190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~---v~~~p~~~~~~~~--~~~~g~~v~l~C~~~  264 (291)
                                 ....|.|..+..+|+|.|.|.+.|..+.......+.   +..+|.+...+..  .+..|+.++|.|.+.
T Consensus        64 -----------~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~  132 (214)
T 1ow0_A           64 -----------VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLAR  132 (214)
T ss_dssp             -----------EEEECTTTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEE
T ss_pred             -----------EEEEEEEeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEe
Confidence                       124567777888899999999988765433333332   2345655443322  267899999999994


Q ss_pred             cCCCC-ceEEEEECCEEccCC
Q psy14540        265 SGDLP-LSLQWYKNGLAISQP  284 (291)
Q Consensus       265 ~~~p~-~~v~W~~~~~~l~~~  284 (291)
                      +.+|+ +.|.|+|||..|...
T Consensus       133 g~~P~~~~v~W~k~g~~l~~~  153 (214)
T 1ow0_A          133 GFSPKDVLVRWLQGSQELPRE  153 (214)
T ss_dssp             EESSSCCEEEEEETTEECCGG
T ss_pred             eeECCCcEEEEEECCEECCCC
Confidence            44564 599999999988654

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.47  E-value=4.4e-13  Score=99.27  Aligned_cols=146  Identities=18%  Similarity=0.252  Sum_probs=81.1

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ...+.+|+.++|.|.+. +.+  .+.+.||+....-  .....          +.+.  . .....|      . .....
T Consensus         9 ~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~--~~~~l----------~~~~--~-~~~~~~------~-~~~~~   65 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAVY-GGSFSDYYWSWIRQPPGK--GLEWI----------GEIN--H-SGSTNY------N-PSLKS   65 (232)
T ss_dssp             CCEECTTSCEEEEEEEE-SSCCSSCCEEEEEECTTS--CCEEE----------EEEC--T-TCCEEE------C-TTTTT
T ss_pred             CEEEeCCCcEEEEEEEc-cccCCCceEEEEEeCCCC--CeEEE----------EEEe--c-CCceee------C-CccCC
Confidence            36788999999999984 443  5789999853110  00000          0000  0 000000      0 00011


Q ss_pred             ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCC--c----cCCceeEEEEec----CCCCCCCC-cccccCC-ceEE
Q psy14540        193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTV--A----SDNHSSNLRVNV----PPHIGPFT-FGELMEG-VRTQ  258 (291)
Q Consensus       193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~--~----~~~~~~~l~v~~----~p~~~~~~-~~~~~~g-~~v~  258 (291)
                      .+.+..  ......|.|.++..+|+|.|.|.+.+..  +    .......|.|..    +|.+.... ...+..| +.++
T Consensus        66 R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~  145 (232)
T 1dn0_B           66 RVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVA  145 (232)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEE
T ss_pred             eEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEE
Confidence            112211  1224589999999999999999998421  1    122345677765    23333211 2224578 9999


Q ss_pred             EEEEeecCCCCc-eEEEEE-CCEEccC
Q psy14540        259 VACVVQSGDLPL-SLQWYK-NGLAISQ  283 (291)
Q Consensus       259 l~C~~~~~~p~~-~v~W~~-~~~~l~~  283 (291)
                      |.|.+.+.+|.+ .|.|++ ||..+..
T Consensus       146 L~C~~~g~~P~p~~v~W~~~~g~~l~~  172 (232)
T 1dn0_B          146 VGCLAQDFLPDSITFSWKYKNNSDISS  172 (232)
T ss_dssp             EEEEEEEEBSSCCEEEEEETTSCEECC
T ss_pred             EEEEEEEEeCCCeEEEEEcCCCCceee
Confidence            999995455776 999999 9988754

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.46  E-value=3.3e-13  Score=85.10  Aligned_cols=84  Identities=32%  Similarity=0.487  Sum_probs=65.4

Q ss_pred             eeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      +..|....+.+|+++.|.|.+.+  .+.+.|+++|..+.. .++...      .   ..|.|.+++.+|+|.|+|.+.+.
T Consensus         5 ~~~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~------~---~~L~i~~~~~~D~G~Y~C~a~n~   73 (95)
T 4hwu_A            5 GSQPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI------G---EYLQIKGATPRDSGLYACTAART   73 (95)
T ss_dssp             ---CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE------T---TEEEECSCCGGGCEEEEEEEECS
T ss_pred             ccCCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe------C---CEEEECcCCcccCEEEEEEEccC
Confidence            44677788999999999999886  579999999988863 222221      1   35999999999999999999998


Q ss_pred             CCceeeeeeEEEEcCC
Q psy14540         85 VGSQTHSADMRVYDAP  100 (291)
Q Consensus        85 ~~~~~~~~~l~v~~~~  100 (291)
                      .|.....+.+.|..++
T Consensus        74 ~g~~~~~~~l~V~~~~   89 (95)
T 4hwu_A           74 VDSETWIFMVNVTDAA   89 (95)
T ss_dssp             SCEEEEEEEEEECCC-
T ss_pred             CCcEEEEEEEEEeCCc
Confidence            8888888888887543

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.45  E-value=1.3e-12  Score=95.57  Aligned_cols=126  Identities=23%  Similarity=0.298  Sum_probs=88.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+....  +..+.                                 
T Consensus        25 p~~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~~~~~---------------------------------   70 (215)
T 3mtr_A           25 PVAVYTWEGNQVNITCEV-FAYPSATISWFRDGQLLPSSNYSNIKIY---------------------------------   70 (215)
T ss_dssp             CSEEEECTTCCEEEEEEE-EEESCCEEEEEETTEESSCSSSCSEEEE---------------------------------
T ss_pred             CceEEEECCCCEEEEEEE-eecCCCEEEEEECCeECCCCCCccEEEe---------------------------------
Confidence            344778899999999999 688999999999998876542  11111                                 


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEee---cCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQ---SGD  267 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~---~~~  267 (291)
                             .......|.|.++...|+|.|+|.|.|..|.....+.|.|..+|........ ...+..+.|.|...   .+.
T Consensus        71 -------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~-~~~~~~~~l~w~~p~~~~~~  142 (215)
T 3mtr_A           71 -------NTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGV  142 (215)
T ss_dssp             -------EETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEEEEE-EEETTEEEEEEECCSCCCSS
T ss_pred             -------cCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcceEE-EEecceEEEEEecCCccCCC
Confidence                   0112456888888888999999999998888888888888776654322211 34567889999741   233


Q ss_pred             CCc--eEEEEECCEE
Q psy14540        268 LPL--SLQWYKNGLA  280 (291)
Q Consensus       268 p~~--~v~W~~~~~~  280 (291)
                      |..  .+.|.+++..
T Consensus       143 pi~~y~v~~~~~~~~  157 (215)
T 3mtr_A          143 PILKYKAEWRAVGEE  157 (215)
T ss_dssp             CEEEEEEEEEETTCC
T ss_pred             ceEEEEEEEEECCCC
Confidence            433  5889988753

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.45  E-value=6e-13  Score=84.64  Aligned_cols=76  Identities=26%  Similarity=0.358  Sum_probs=51.1

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+....... ....|.|..+..+|.|.|+|.+.|..|.
T Consensus        12 ~~~~~~v~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~   87 (99)
T 3puc_A           12 GLQDTTVSSDSVAKFAVKA-TGEPRPTAIWTKDGKAITQGGKYKLSEDK-GGFFLEIHKTDTSDSGLYTCTVKNSAGS   87 (99)
T ss_dssp             CCCCEEEESSSCEEEEEEE-EEESCCEEEEEETTEECCSSSSEEEEEET-TEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cCccEEEeCCCcEEEEEEE-EecCCCEEEEEECCEECcCCCCEEEEEeC-CEEEEEECCCCcccCEEEEEEEEeCCCc
Confidence            3445788899999999999 68888999999999988766555443222 2334555555555555555555554443

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.45  E-value=1.6e-12  Score=94.70  Aligned_cols=121  Identities=18%  Similarity=0.277  Sum_probs=75.0

Q ss_pred             cceeecCCCceEEEEEeeCCCC---CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP---PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ....+..|+.++|+|.+..+.|   ...+.|+|+|.++...           ...|.+..+...++|.|+|.+.+..+..
T Consensus        10 ~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa-----------T~tLti~s~t~sdSG~YqCvVTDa~Gcs   78 (304)
T 3shs_A           10 NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-----------TATLTVADATSENAGSYKVTVQDTDTMT   78 (304)
T ss_dssp             SCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC-----------SSEEEESSCCGGGCEEEEEEEEETTTCC
T ss_pred             CCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC-----------cceEEeeeccccCCeEEEEEEEECCCCe
Confidence            3356778999999999977878   5689999999876432           2245555666666666666665544322


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC--CCC--CCcccccCCceEEEEEEe--e
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH--IGP--FTFGELMEGVRTQVACVV--Q  264 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~--~~~--~~~~~~~~g~~v~l~C~~--~  264 (291)
                      .                                       .+-.+.|..++.  +..  +....+..|..+.|.+.+  .
T Consensus        79 ~---------------------------------------tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~S  119 (304)
T 3shs_A           79 S---------------------------------------VESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFS  119 (304)
T ss_dssp             E---------------------------------------EECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEET
T ss_pred             e---------------------------------------eeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEecc
Confidence            1                                       111112221111  101  111114567788888877  5


Q ss_pred             cCCC-----CceEEEEECCEEccCC
Q psy14540        265 SGDL-----PLSLQWYKNGLAISQP  284 (291)
Q Consensus       265 ~~~p-----~~~v~W~~~~~~l~~~  284 (291)
                      +|.|     ..+++|++||..++..
T Consensus       120 GGtppA~~~~yTYQWyKngt~IsgA  144 (304)
T 3shs_A          120 GGKTPADNYELHYSWSKGEDVIDTT  144 (304)
T ss_dssp             TSCCSSTTCCCEEEEEETTEEEESS
T ss_pred             CCCCcccCCCceeEEeeCCeEccCc
Confidence            6666     4799999999988644

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.45  E-value=1.7e-13  Score=88.19  Aligned_cols=78  Identities=27%  Similarity=0.589  Sum_probs=51.3

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....+..+.... ....|.|.++...|.|.|+|.+.|..|..
T Consensus        19 ~~p~~~~v~~G~~v~L~C~~-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   96 (106)
T 1nct_A           19 TKPRSMTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLSTSARHQVTTTK-YKSTFEISSVQASDEGNYSVVVENSEGKQ   96 (106)
T ss_dssp             ECCCCEEESSSSCEECCEEE-ECSSCCBCCBCSSSSCCTTCSSEEEEECS-SEEEEEECCCCSSCCSEEEECCBCSSCBC
T ss_pred             ECCCCEEEeCCCcEEEEEEE-EEcCCCEEEEEECCEECCCCCCEEEEECC-CEEEEEECcCCchhCEEEEEEEEeCCCeE
Confidence            34456788999999999999 68899999999999888765555443321 23345555555555444444444444443

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.45  E-value=2.8e-13  Score=85.06  Aligned_cols=72  Identities=22%  Similarity=0.367  Sum_probs=46.7

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|++++  ..+.........   .....|.|..+..+|+|.|+|.|.|..|
T Consensus         9 ~~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~~G   82 (93)
T 1wit_A            9 SRKIKIKAGFTHNLEVDF-IGAPDPTATWTVGDSGAALAPELLVDAK---SSTTSIFFPSAKRADSGNYKLKVKNELG   82 (93)
T ss_dssp             CCEEEECTTBCCEEEEEE-ECCSSCEEEEECSTTTCBCSTTSEEEEE---TTEEEEECTTBCGGGCEEEEEEEEETTE
T ss_pred             CCceEEeCCCEEEEEEEE-EEcCCCEEEEEECCCCcccCCcEEEEec---CCEEEEEECCCChhcCEEEEEEEEcCCC
Confidence            456788999999999999 69999999999999  776543222111   1234455555555555555555554444

>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}

Probab=99.45  E-value=3.5e-12  Score=92.77  Aligned_cols=140  Identities=17%  Similarity=0.219  Sum_probs=90.0

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----CC-eeEeceEEee--ccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----GD-RFVMGQYMSL--HGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~~-~~~~~~~~~~--~~~~~~~l~i~~~~~~d   73 (291)
                      .+.+.|..+.+.+|++++|.|.+.+. ...+.|++.  ++...     .. .....+....  .....++|+|.+++.+|
T Consensus         3 ~V~Q~p~~v~v~~G~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sLtI~~lq~~D   81 (229)
T 3mbe_C            3 PVEQNPPALSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLED   81 (229)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEESSEEEEETTEEEEEETTTTEEEEEECSCCSTT
T ss_pred             cEEEcCCEEEEEcCCCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeCCCCccCCCEEEEECCCCCEEEEEEECCcccC
Confidence            35677888899999999999999876 568999983  32221     00 0011111111  34456889999999999


Q ss_pred             CeEEEEEEeCCC--C--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540         74 SGIYQCTATNRV--G--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus        74 ~G~y~C~~~~~~--~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      +|.|.|.+....  .  .....+.|.|......+.+......       .....++|.|.+...+|...+.|++++..+.
T Consensus        82 SG~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~~~~p~P~Vf~~~-------~~~~~vtl~Cl~~gf~P~i~v~~~~~~~~~~  154 (229)
T 3mbe_C           82 SGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQLK-------DPRSQDSTLCLFTDFDSQINVPKTMESGTFI  154 (229)
T ss_dssp             CBEEEEEEECSSSTTCEEECCCCEEEEECCCSSCCCEEEEEE-------CTTCTTCEEEEEESCCSSSCCCCCCSSSEEE
T ss_pred             CCCEEEEEEeCCCcccceeCCCEEEEEecccCCCCCEEEEcc-------CCCCCEEEEEEccccCCceEeEeeccCceEe
Confidence            999999987432  1  1233456777654211211111111       1123489999998888888999999987765


Q ss_pred             CC
Q psy14540        150 SD  151 (291)
Q Consensus       150 ~~  151 (291)
                      ..
T Consensus       155 ~~  156 (229)
T 3mbe_C          155 TD  156 (229)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.45  E-value=4.9e-13  Score=92.35  Aligned_cols=96  Identities=24%  Similarity=0.377  Sum_probs=65.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....++.+.....+                              
T Consensus        48 ~~~~~v~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~------------------------------   96 (154)
T 1fhg_A           48 ILDMEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEG------------------------------   96 (154)
T ss_dssp             CCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTC------------------------------
T ss_pred             CCcEEEeCCCeEEEEEEE-EEecCCEEEEEECCEECCCCCcEEEEECCCC------------------------------
Confidence            345778899999999999 6889999999999998876555443322211                              


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF  248 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~  248 (291)
                               ...|.|.++...|+|.|+|.|.|..|.....+.|.|..+|.+...+.
T Consensus        97 ---------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~~~~  143 (154)
T 1fhg_A           97 ---------NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEG  143 (154)
T ss_dssp             ---------EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC--------
T ss_pred             ---------eEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEeCcCcCCCCCC
Confidence                     23566677777777778888888777777788888887776655443

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=99.45  E-value=2.8e-13  Score=97.94  Aligned_cols=128  Identities=16%  Similarity=0.168  Sum_probs=79.2

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--ee---c-C--CC--eeEeceEEe--eccceEEEEEEeecCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YP---L-A--GD--RFVMGQYMS--LHGDVISHVNISSVRVE   72 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~---~-~--~~--~~~~~~~~~--~~~~~~~~l~i~~~~~~   72 (291)
                      +...|..+.+.+|++++|.|.+.+.....+.|++..  ..   + .  ..  .....+...  ......++|+|.+++.+
T Consensus         3 v~q~p~~v~v~~G~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   82 (203)
T 2bnu_A            3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (203)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEEcCCEEEEeCCCCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcc
Confidence            456688889999999999999976544579999842  21   1 1  10  001111111  12345678999999999


Q ss_pred             CCeEEEEEEeCCC---C--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCcee
Q psy14540         73 DSGIYQCTATNRV---G--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTI  139 (291)
Q Consensus        73 d~G~y~C~~~~~~---~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~  139 (291)
                      |+|.|.|.+.+..   .  .....+.|.|......+.+.+.....       ....++|.|.+...+|.+.+
T Consensus        83 Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~-------~~~~~~L~C~~~g~~P~p~v  147 (203)
T 2bnu_A           83 DSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRR-------SKSSDKSVCLFTDFDSQTNV  147 (203)
T ss_dssp             GCEEEEEEEEECSSSTTCCEECCCEEEEEECCCSSCCCEEEEECC-------SSSSSCEEEEEESCCTTCCC
T ss_pred             cCeEEEEEEEcCcCcceeeeeCCCEEEEEeCCCCCCCCeEEecCC-------CCCCcEEEEEccccccCccc
Confidence            9999999997531   1  11234577776543211111111111       12378999999666898877

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.44  E-value=7.4e-13  Score=99.46  Aligned_cols=145  Identities=16%  Similarity=0.228  Sum_probs=82.0

Q ss_pred             ceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        115 SIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      .+.+.+|+.++|.|.+... .+...+.|++....    ...          .+.+..........       ........
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~----~~~----------~~~~~~~~~~~~~~-------~~~~~~~R   67 (253)
T 3liz_H            9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPD----KRL----------ELVATINSNGASTY-------YPDTVKGR   67 (253)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTT----SCE----------EEEEEECTTSSCEE-------CCTTTTTT
T ss_pred             CEEECCCCcEEEEEEeeCccccCceEEEEEECCC----CCc----------EEEEEEecCCCccc-------cCcccCCc
Confidence            4678899999999998431 23568999984311    000          01100000000000       00001111


Q ss_pred             eEEEE--eccceEEEEeeeecCCCeeEEEEeeeCC----ccCCceeEEEEe----cCCCCCCCCc-ccccCCceEEEEEE
Q psy14540        194 SNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTV----ASDNHSSNLRVN----VPPHIGPFTF-GELMEGVRTQVACV  262 (291)
Q Consensus       194 ~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~-~~~~~g~~v~l~C~  262 (291)
                      +.+..  ......|.|.+++.+|+|.|.|.+.+..    ........|.|.    .+|.+..... ..+..|+.++|.|.
T Consensus        68 ~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~  147 (253)
T 3liz_H           68 FTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCL  147 (253)
T ss_dssp             CEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEE
Confidence            22221  1235679999999999999999998762    222344566775    3454442222 23668999999999


Q ss_pred             eecCCCCc-eEEEEECCEE
Q psy14540        263 VQSGDLPL-SLQWYKNGLA  280 (291)
Q Consensus       263 ~~~~~p~~-~v~W~~~~~~  280 (291)
                      +.+++|.+ .+.|+++|..
T Consensus       148 ~~g~~P~~~~v~W~~~~~~  166 (253)
T 3liz_H          148 VKGYFPEPVTVTWNSGSLS  166 (253)
T ss_dssp             EEEEBSSCCEEEEGGGTBC
T ss_pred             EeeEeCCCeEEEEEeCCee
Confidence            95447766 9999999873

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.44  E-value=1.8e-13  Score=108.12  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=65.9

Q ss_pred             ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      .+....+.+|+++.|.|.+.+ |.+.+.|++++..+.............  .  .+|.|.+++.+|+|.|+|.+.+..|.
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~--~--~~L~I~~v~~~D~G~Y~C~a~N~~g~  326 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVR--N--GDLFFKKVQVEDGGVYTCYAMGETFN  326 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEE--T--TEEEESSCCTTSCEEEEEEEECSSCE
T ss_pred             cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEee--c--CeEEEeecCcccCEEEEEEEecCCCc
Confidence            345678999999999999998 889999999766543211100011111  1  24999999999999999999999888


Q ss_pred             eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeE
Q psy14540         88 QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTIS  140 (291)
Q Consensus        88 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~  140 (291)
                      ....+.+.|...+                  .+|+.++|.|.+ .|.|.|.+.
T Consensus       327 ~~~~~~l~V~~~~------------------~~g~~~~l~C~~-~g~P~P~i~  360 (361)
T 2xot_A          327 ETLSVELKVYNFT------------------LHGHHDTLNAAA-DPWSHPQFE  360 (361)
T ss_dssp             EEEEEEEEEESSC------------------CC--------------------
T ss_pred             cEEEEEEEEEeee------------------ccCCceEEEEEe-CCCCCCccc
Confidence            8888888885421                  467889999999 788988763

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.44  E-value=6.8e-13  Score=97.58  Aligned_cols=79  Identities=22%  Similarity=0.321  Sum_probs=55.9

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCC--ccCCceeEEEEec----CCCCC-CCCcccccCCceEEEEEEeecCCCC--ceE
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTV--ASDNHSSNLRVNV----PPHIG-PFTFGELMEGVRTQVACVVQSGDLP--LSL  272 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~--~~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~v~l~C~~~~~~p~--~~v  272 (291)
                      ..+|.|.++..+|+|.|.|.+.+..  ........|.|..    +|.+. ..+... .+|+.++|.|.+.++.|.  +.+
T Consensus        80 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v  158 (221)
T 3m8o_H           80 TAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSV  158 (221)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEE
T ss_pred             EEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEE
Confidence            5579999999999999999998763  2233445666652    23332 112222 689999999999444775  599


Q ss_pred             EEEECCEEc
Q psy14540        273 QWYKNGLAI  281 (291)
Q Consensus       273 ~W~~~~~~l  281 (291)
                      .|+++|..+
T Consensus       159 ~W~~~g~~~  167 (221)
T 3m8o_H          159 TWSESGQGV  167 (221)
T ss_dssp             EESCCSTTC
T ss_pred             EEEECCEEC
Confidence            999999876

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.44  E-value=5.5e-13  Score=87.23  Aligned_cols=89  Identities=19%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  199 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~  199 (291)
                      .+..+.|.|.+ .|.|.|.++|++||.++....+........           ..+...                     
T Consensus        14 ~~~~~~l~c~v-~G~P~P~I~W~knG~~l~~~~~~~~~~~~~-----------~~~~~~---------------------   60 (126)
T 1he7_A           14 EMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEP-----------AANETV---------------------   60 (126)
T ss_dssp             CCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECC-----------CSSCCC---------------------
T ss_pred             cCccEEEEEEE-eeeCCCeEEEEECCEECCCCCceeEEEeec-----------cccccc---------------------
Confidence            67789999999 899999999999999997765543221100           000000                     


Q ss_pred             ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540        200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH  242 (291)
Q Consensus       200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~  242 (291)
                       ....|.|..+...|+|.|+|.|.|..|....++.|.|...|.
T Consensus        61 -~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~~~P~  102 (126)
T 1he7_A           61 -RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPF  102 (126)
T ss_dssp             -EEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred             -cceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEEEcCCC
Confidence             123566777777778888888888888888888888876654

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=7.3e-13  Score=84.73  Aligned_cols=81  Identities=17%  Similarity=0.328  Sum_probs=62.2

Q ss_pred             ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540         10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ   88 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~   88 (291)
                      ....+.+|++++|.|.+. .|.+.+.|+|++..+. ..++..     ........|.|.+++.+|+|.|+|.+.    ..
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C~a~----~~   88 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRV-----EAVGCTRRLVVQQAGQAEAGEYSCEAG----GQ   88 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEE-----EEETTEEEEEETTCCTTTCSCEEEEET----TE
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEE-----EEcCCEEEEEECCCCcccCEEEEEEcC----CC
Confidence            445799999999999998 7888999999999887 333332     123344679999999999999999985    34


Q ss_pred             eeeeeEEEEcCC
Q psy14540         89 THSADMRVYDAP  100 (291)
Q Consensus        89 ~~~~~l~v~~~~  100 (291)
                      ...+.|.|..++
T Consensus        89 ~~~~~l~V~~p~  100 (102)
T 2eo1_A           89 QLSFRLQVAGQC  100 (102)
T ss_dssp             ECCEEEEEESCC
T ss_pred             cEEEEEEEeCCC
Confidence            456777777643

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.44  E-value=1.3e-13  Score=85.66  Aligned_cols=68  Identities=16%  Similarity=0.417  Sum_probs=54.5

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      +.+.+|+.+.|.|.+ .+ |.+.+.|+|||.++....++.+...+ ....|.|.++..+|+|.|+|.|.|.
T Consensus        16 v~~~~g~~v~l~C~v-~~-p~~~v~W~k~g~~i~~~~~~~i~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           16 VHAITSECVMLACEV-DR-EDAPVRWYKDGQEVEESDFVVLENEG-PHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             EECCTTCCEEEEEEC-SC-TTSCCEEEETTSCCCCCSSCEEEEET-TEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEEECCCcEEEEEEE-CC-CCcEEEEEECCEEeeeeeeeeEEecC-CeEEEEeCCCChhhcEEEEEEEcce
Confidence            455689999999998 45 77889999999999888777665543 3567888888888888888887654

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.7e-13  Score=89.06  Aligned_cols=91  Identities=25%  Similarity=0.454  Sum_probs=67.0

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+....+.+|+.++|.|.+ .+.|.+.+.|++++..+..............                             
T Consensus        15 ~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~-----------------------------   64 (110)
T 2dm3_A           15 APGDLTVQEGKLCRMDCKV-SGLPTPDLSWQLDGKPVRPDSAHKMLVRENG-----------------------------   64 (110)
T ss_dssp             CCCEEEEESSSCBCCEEEE-ECSSCCEEECBBSSSBCCCCSSEEEEECTTS-----------------------------
T ss_pred             CCCcEEEeCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCceEEEEecCC-----------------------------
Confidence            3456788899999999999 6889999999999988765443322211111                             


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH  242 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~  242 (291)
                                ...|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|.
T Consensus        65 ----------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           65 ----------VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             ----------CEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECCCC
T ss_pred             ----------eEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCCCC
Confidence                      24577777777888888888888887778888888877664

>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.15  E-value=1.1e-14  Score=102.91  Aligned_cols=138  Identities=14%  Similarity=0.133  Sum_probs=84.1

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--ee---cC-C--Ce--eEeceEEee--ccceEEEEEEeecCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YP---LA-G--DR--FVMGQYMSL--HGDVISHVNISSVRVE   72 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~---~~-~--~~--~~~~~~~~~--~~~~~~~l~i~~~~~~   72 (291)
                      +.+.|..+.+.+|++++|.|.+.+.+...+.|++..  +.   +. .  ..  ....+....  .....++|+|.+++.+
T Consensus         3 v~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~   82 (185)
T 3c6l_A            3 VRQSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPG   82 (185)
Confidence            456678889999999999999876544589999853  21   11 0  00  001111111  1234578999999999


Q ss_pred             CCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540         73 DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus        73 d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      |+|.|.|.+.+........+.|.|......+.+.+.. ..+      ..+.++|.|.+...+|.+.|.|..+...+.
T Consensus        83 DsG~Y~C~~~~~~~~fg~gT~L~V~~~~~~~~P~V~~-~~~------~~~~vtL~C~~~gf~P~p~v~~~~~~~~~~  152 (185)
T 3c6l_A           83 DSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPAVYQ-LKD------PRSQDSTLCLFTDFDSQINVPKTMESGTFI  152 (185)
Confidence            9999999987521112233456665432111111111 111      122689999997779999999987665543

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.43  E-value=5.2e-13  Score=87.42  Aligned_cols=95  Identities=19%  Similarity=0.262  Sum_probs=64.7

Q ss_pred             cCCcceeecCCCceEEEEEeeC--CCCCceeEEeECCEe-cc--CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTK--GDPPLTISWLKNGLP-IL--SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN  185 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~--~~p~~~~~W~~~~~~-~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  185 (291)
                      ..+..+.+.+|+.++|.|.+..  +.|.|.|.|||+... +.  ...++.+..          ........         
T Consensus        12 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~----------~~~~~~~~---------   72 (126)
T 2dav_A           12 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE----------TFERHSRV---------   72 (126)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEE----------EEETTTTE---------
T ss_pred             EcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEcc----------cccccccc---------
Confidence            4456688999999999999842  248999999996421 11  011211110          00000000         


Q ss_pred             cCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540        186 TVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV  239 (291)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~  239 (291)
                                     ....|.|.++...|+|.|+|+|.|..+..+..+.|.|..
T Consensus        73 ---------------~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           73 ---------------YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             ---------------EEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             ---------------ceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence                           135788899999999999999999998888899999988

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.42  E-value=5e-13  Score=83.59  Aligned_cols=73  Identities=21%  Similarity=0.335  Sum_probs=58.9

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      ..+....+.+|+.+.|.|.+ .+ +.+.+.|+++|.++....++.+...+ ....|.|.++..+|+|.|+|.+.|.
T Consensus        10 ~~~~~~~v~~G~~v~l~C~v-~~-~~~~v~W~k~g~~i~~~~~~~i~~~g-~~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T 1waa_A           10 KPLYGVEVFVGETAHFEIEL-SE-PDVHGQWKLKGQPLAASPDCEIIEDG-KKHILILHNCQLGMTGEVSFQAANT   82 (93)
T ss_dssp             ECCCCEEEETTSCEEEEEEE-SS-SSCCCEEEETTEECCCBTTEEEEEET-TEEEEEECSCCGGGCEEEEEEETTE
T ss_pred             ccCcceEEeCCCCEEEEEEE-CC-CCCeEEEEECCEECcCCCCEEEEEEC-CEEEEEECCCChhhCEEEEEEECCC
Confidence            44456789999999999999 45 45789999999999887777665433 2567999999999999999998774

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.42  E-value=1e-12  Score=99.62  Aligned_cols=137  Identities=18%  Similarity=0.237  Sum_probs=78.0

Q ss_pred             CcceeecCCCceEEEEEeeCCCC-----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP-----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      +..+.+.+|+.++|.|.+ .+.+     .+.+.|+++...-  ...            +.+...    . .+      ..
T Consensus        22 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~g~--~~~------------~l~~~~----~-~~------~~   75 (268)
T 1x9q_A           22 PLSLPVSLGDQASISCRS-SQSLVHSNGNTYLRWYLQKPGQ--SPK------------VLIYKV----S-NR------VS   75 (268)
T ss_dssp             CSEECCCTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTS--CCE------------EEEETT----T-EE------CT
T ss_pred             CCeEEecCCCCEEEEeEe-cCCcccccCCceEEEEEECCCC--CCE------------EEEEec----C-CC------CC
Confidence            345678899999999998 5655     5899999853110  000            000000    0 00      00


Q ss_pred             CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCC------------------------
Q psy14540        188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPH------------------------  242 (291)
Q Consensus       188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~------------------------  242 (291)
                      + ....+.+........|.|.++..+|+|.|.|.+.+..+. ......|.|..++.                        
T Consensus        76 ~-~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~  154 (268)
T 1x9q_A           76 G-VPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVK  154 (268)
T ss_dssp             T-SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCE
T ss_pred             C-CcccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceE
Confidence            0 011122222233567889999999999999999876432 22334555554321                        


Q ss_pred             CCCCCcccccCCceEEEEEEeecCCCC--ceEEEEEC
Q psy14540        243 IGPFTFGELMEGVRTQVACVVQSGDLP--LSLQWYKN  277 (291)
Q Consensus       243 ~~~~~~~~~~~g~~v~l~C~~~~~~p~--~~v~W~~~  277 (291)
                      +..+....+.+|+.++|+|.+ .+.++  +.+.|+|+
T Consensus       155 ~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~  190 (268)
T 1x9q_A          155 LDETGGGLVQPGGAMKLSCVT-SGFTFGHYWMNWVRQ  190 (268)
T ss_dssp             EEEECCEEECTTCCEEEEEEE-ESSCGGGCEEEEEEE
T ss_pred             EECCCceEecCCCcEEEEEEe-cCccccccEEEEEEe
Confidence            001112238899999999999 66553  79999985

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.42  E-value=8.5e-13  Score=84.42  Aligned_cols=88  Identities=23%  Similarity=0.345  Sum_probs=63.1

Q ss_pred             cCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540        119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  198 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~  198 (291)
                      ..++.+.|.|.+ .|.|.|.+.|+++|..+....+....          +...   ...                     
T Consensus        14 ~~~~~~~~~c~v-~G~P~P~i~W~k~g~~l~~~~~~~~~----------~~~~---~~~---------------------   58 (103)
T 1wwb_X           14 TSDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTK----------IHVT---NHT---------------------   58 (103)
T ss_dssp             CCCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEE----------EEEE---CSS---------------------
T ss_pred             eECcEEEEEEEE-EEeCCCEEEEEECCEECCCCCcEeEE----------EEec---CCc---------------------
Confidence            457889999999 79999999999999988765432111          0000   000                     


Q ss_pred             eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540        199 NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH  242 (291)
Q Consensus       199 ~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~  242 (291)
                       ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus        59 -~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  101 (103)
T 1wwb_X           59 -EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             -EEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred             -EEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEECCCCC
Confidence             0134588888888888888888888888888888888777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.41  E-value=4.4e-13  Score=105.99  Aligned_cols=108  Identities=18%  Similarity=0.270  Sum_probs=64.3

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|+.+.|.|.+ .| |.+.+.|++++..+.....                     ..+.|.            
T Consensus       253 ~~~v~v~~G~~~~l~C~~-~g-p~p~i~W~~~~~~~~~~~~---------------------~~~r~~------------  297 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDT-KQ-QGMTKVWVSPSNEQVLSQG---------------------SNGSVS------------  297 (361)
T ss_dssp             CCCCEEETTCCEEECCCC-SS-TTCEEEEECTTSCBCCSCC---------------------SSSSEE------------
T ss_pred             ccCceecCCCeEEEEeEe-eC-CCCeEEEEeCCCeeEeecc---------------------cCCceE------------
Confidence            345688899999999999 67 8899999997755432210                     000000            


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceE
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSL  272 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v  272 (291)
                           +  ..++|.|.++..+|+|.|+|.|.|..|..+..+.|.|...+          .+|+.++|.|.+ .|.|.|+|
T Consensus       298 -----~--~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~----------~~g~~~~l~C~~-~g~P~P~i  359 (361)
T 2xot_A          298 -----V--RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFT----------LHGHHDTLNAAA-DPWSHPQF  359 (361)
T ss_dssp             -----E--ETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEESSC----------CC-------------------
T ss_pred             -----e--ecCeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEeee----------ccCCceEEEEEe-CCCCCCcc
Confidence                 0  13468888899999999999999998888888888886533          588899999999 89999877


Q ss_pred             E
Q psy14540        273 Q  273 (291)
Q Consensus       273 ~  273 (291)
                      +
T Consensus       360 ~  360 (361)
T 2xot_A          360 E  360 (361)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.41  E-value=2.3e-12  Score=84.01  Aligned_cols=105  Identities=23%  Similarity=0.344  Sum_probs=67.3

Q ss_pred             CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEE
Q psy14540         86 GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSS  165 (291)
Q Consensus        86 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  165 (291)
                      +.....+.|.|...|  |    .....+....+.+|+.+.|.|.+ .+.  +.+.|++++..+....++.+...+     
T Consensus         5 g~~~~~~~l~V~~~p--p----~~~~~~~~~~v~~G~~v~l~C~~-~~~--p~v~W~k~~~~l~~~~~~~~~~~~-----   70 (113)
T 2edh_A            5 SSGRTSAMLTVRALP--I----KFTEGLRNEEATEGATAVLRCEL-SKM--APVEWWKGHETLRDGDRHSLRQDG-----   70 (113)
T ss_dssp             CCCCCCCCCCCCCSC--C----CEEECCCCCEECTTSCEEEEEEE-SSC--CCCEEEESSSBCCCSSSEEEEEET-----
T ss_pred             CCCcEEEEEEEEcCC--C----cccccCCceEEeCCCeEEEEEEE-CCC--CcEEEEECCEECCCCCcEEEEECC-----
Confidence            334455556665443  1    12233455788999999999999 454  689999999888665554433211     


Q ss_pred             EEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540        166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI  243 (291)
Q Consensus       166 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~  243 (291)
                                                         ....|.|.++..+|+|.|+|.|    +.......|.|..+|..
T Consensus        71 -----------------------------------~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~~p~~  109 (113)
T 2edh_A           71 -----------------------------------ARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSG  109 (113)
T ss_dssp             -----------------------------------TEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEECCCCCS
T ss_pred             -----------------------------------CEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEEeCCCCC
Confidence                                               1235666777777777777777    44556677777766643

>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}

Probab=99.41  E-value=2.4e-12  Score=91.87  Aligned_cols=141  Identities=16%  Similarity=0.147  Sum_probs=89.0

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC------CC--eeEeceEEee--ccceEEEEEEeecCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA------GD--RFVMGQYMSL--HGDVISHVNISSVRV   71 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~------~~--~~~~~~~~~~--~~~~~~~l~i~~~~~   71 (291)
                      ++.+.|..+.+.+|++++|.|.+.+.....+.|++.  ++...      ..  .....+....  .....++|+|.+++.
T Consensus         2 ~V~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~   81 (199)
T 3gsn_A            2 NVEQSPQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQP   81 (199)
T ss_dssp             CCEEECSEEEEETTCCCEEEEECCCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCG
T ss_pred             eEEECCCEEEEeCCCCEEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCcc
Confidence            356778888999999999999998644567999983  22111      00  0011111111  234568899999999


Q ss_pred             CCCeEEEEEEeCCCC-ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540         72 EDSGIYQCTATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  150 (291)
Q Consensus        72 ~d~G~y~C~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~  150 (291)
                      +|+|.|.|.+..... .....+.|.|......+.+.+......       ...++|.|.+...+|...+.|.++|..+..
T Consensus        82 ~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~~~~~-------~~~~tl~Cl~~gf~P~i~~~~~~~~~~~~~  154 (199)
T 3gsn_A           82 EDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDS-------KSSDKSVCLFTDFDSQTNVSQSKDSDAYIT  154 (199)
T ss_dssp             GGCEEEEEEEESSSCEEECSCEEEEEECCCSSCCCEEEECCCS-------SSSSSCCEEEETCCTTCCSSCSSCSSEEEC
T ss_pred             cCCccEEEEEcccccccCCCCEEEEEecccCCCCCEEEEcccC-------CCCceEEEEeecccCCeEeEeccCCCeEec
Confidence            999999999864221 122335677765321111111111111       123789999988888778999999887765


Q ss_pred             C
Q psy14540        151 D  151 (291)
Q Consensus       151 ~  151 (291)
                      .
T Consensus       155 ~  155 (199)
T 3gsn_A          155 D  155 (199)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.41  E-value=5.3e-13  Score=84.14  Aligned_cols=72  Identities=26%  Similarity=0.552  Sum_probs=47.3

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+....+.+|+.+.|.|.+ .+.| +.+.|++++..+....+..+.     ...|.|..+...|+|.|+|.+.|..|.
T Consensus        14 ~~~~~~~v~~G~~v~l~C~~-~g~p-p~i~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~n~~g~   85 (95)
T 2ckn_A           14 VEVESLLVHPGDLLQLRCRL-RDDV-QSINWLRDGVQLVESNRTRIT-----GEEVEVRDSIPADSGLYACVTSSPSGS   85 (95)
T ss_dssp             TBBCCEEECTTSCEEEECCE-ESSC-CEEEEEBTTBCCCCCSSEEEC-----SSEEEESSCCGGGSEEEEEEEEETTEE
T ss_pred             cCcceEEEcCCCeEEEEEEC-CCCC-CceEEEECCEecCCCCCEEEe-----CCEEEECCCChHHCEEEEEEeccCCCc
Confidence            34556788999999999999 5667 799999999888655444332     224555555555555555555444443

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=99.40  E-value=7.7e-12  Score=104.28  Aligned_cols=138  Identities=14%  Similarity=0.228  Sum_probs=83.6

Q ss_pred             eecceee-eecCCcEEEEEEecC-CCC---CeeEEEECCeecCCCeeEece-EEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          7 YKFIQQT-LQPGPPVSLKCIATG-NPT---PHISWKLDGYPLAGDRFVMGQ-YMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         7 ~~~~~~~-v~~g~~v~l~C~~~~-~~~---~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ..+.... +..+....|.|.+.+ .+.   ..|+|++++..+......... .........+.|.|......|.+.|+|+
T Consensus       347 ~~~~~~~~~~~~~~~~l~C~~~~~~p~~~~i~v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~~~~~~y~C~  426 (551)
T 1ntl_A          347 FPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCR  426 (551)
T ss_pred             cCCCcccceeeccCcceEEEEEecccCCCceEEEEEECCccccccccCCceECCCCeEEEEEeeEcCHHHccCCceEEEE
Confidence            3333333 667889999999987 343   589999998765422111100 0011112346788888888888999999


Q ss_pred             EeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEecc
Q psy14540         81 ATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPIL  149 (291)
Q Consensus        81 ~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~  149 (291)
                      +.+.....  .+.+.+.+.. ...|.  ... ..+. ..+..|+.++|.|.+.+.+|. ..|+|+++|+.+.
T Consensus       427 v~~~~~~~~~~~~~~~~~~~-~~~P~--V~~-~~~~-~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~  493 (551)
T 1ntl_A          427 VNSAAFPAPIEKTISKTKGR-PKAPQ--LYT-IPPP-KEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE  493 (551)
T ss_pred             EecCCCCCCeEEEEecCCCC-CcCCc--eEE-eCCC-hhhccCCceEEEEEEEEeECCCCEEEEEECCEEcc
Confidence            98765532  2233333221 11121  111 1111 223468899999999665775 6899999999874

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.40  E-value=3.6e-12  Score=97.74  Aligned_cols=140  Identities=16%  Similarity=0.224  Sum_probs=79.4

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ...+.+|+.++|.|.+ .+.+  .+.+.|+++....  ...            +.+..........     .....  ..
T Consensus        31 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~--~~~------------~l~~~~~~~~~~~-----~~~~~--~~   88 (291)
T 2gki_A           31 PELVKPGASVKMSCKA-SGYTFTSYVMHWVKQKPGQ--GLE------------WIGYINPYNDGTK-----YNEKF--KG   88 (291)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTS--CCE------------EEEEEETTTTEEE-----ECGGG--BT
T ss_pred             cEEecCCCCEEEEEec-cCCcccccEEEEEEECCCC--CcE------------EEEEEecCCCccc-----cCccc--CC
Confidence            4678899999999998 4655  5789999853110  000            0000000000000     00000  00


Q ss_pred             ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCC-c----cCCceeEEEEec----------------CCCCCCCCcc
Q psy14540        193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTV-A----SDNHSSNLRVNV----------------PPHIGPFTFG  249 (291)
Q Consensus       193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~----~~~~~~~l~v~~----------------~p~~~~~~~~  249 (291)
                      .+.+..  .....+|.|.++..+|+|.|.|.+.+.. +    .......|.|..                ++.+...+..
T Consensus        89 R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~  168 (291)
T 2gki_A           89 KATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSS  168 (291)
T ss_dssp             TBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSE
T ss_pred             CEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCE
Confidence            111111  1234578888888888888888888763 1    111234566655                2233333333


Q ss_pred             c-ccCCceEEEEEEeecCCCCc------eEEEEEC
Q psy14540        250 E-LMEGVRTQVACVVQSGDLPL------SLQWYKN  277 (291)
Q Consensus       250 ~-~~~g~~v~l~C~~~~~~p~~------~v~W~~~  277 (291)
                      . +.+|+.++|.|.+ .+.|.+      .+.|+|+
T Consensus       169 ~~v~~G~~v~L~C~~-~~~~~~~~~~~~~v~W~k~  202 (291)
T 2gki_A          169 LAVSAGEKVTMSCKS-SQSLFNSRTRKNYLAWYQQ  202 (291)
T ss_dssp             EEEETTSCEEEEEEE-SSCCEETTTTEECEEEEEE
T ss_pred             EEEcCCCcEEEEEEc-CCccccccccceeEEEEEE
Confidence            3 8999999999999 777665      9999996

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=8.2e-12  Score=81.39  Aligned_cols=86  Identities=17%  Similarity=0.375  Sum_probs=62.3

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ..+.+|+.+.|.|.+ . .|.+.+.|++++..+....+..+...+                                   
T Consensus        23 ~~~~~G~~v~L~C~~-~-~p~~~v~W~k~g~~~~~~~~~~~~~~~-----------------------------------   65 (113)
T 2cpc_A           23 VAAVRLERVVLTCEL-C-RPWAEVRWTKDGEEVVESPALLLQKED-----------------------------------   65 (113)
T ss_dssp             EEEETTCCEEEEEEE-S-CTTCCCEEEETTEECCCBTTBEEEECS-----------------------------------
T ss_pred             EEEEcCCeEEEEEEe-c-CCCCeEEEEECCEECccCCCEEEEECC-----------------------------------
Confidence            567799999999998 4 788899999999988665444332211                                   


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCC
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFT  247 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~  247 (291)
                           ....|.|.++..+|+|.|+|.+.|    .+..+.|.|..+|.+...+
T Consensus        66 -----~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~~~p~~~~~p  108 (113)
T 2cpc_A           66 -----TVRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTVTEPPVRIIYS  108 (113)
T ss_dssp             -----SEEEEEESSCCTTTCEEEEEESSS----CEEEEEEEEECCCCCCCCC
T ss_pred             -----CEEEEEECCCCcccCEEEEEEEec----CcEEEEEEEecCCchhccC
Confidence                 123577777778888888888877    4557788888877655443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	291
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-18
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-11
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-15
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	8e-14
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-14
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	8e-09
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-14
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	8e-10
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-14
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	9e-05
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-13
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-13
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-09
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-13
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	3e-08
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.001
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	8e-13
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	7e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-12
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	6e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-05
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-12
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	8e-12
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-11
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-09
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	3e-11
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	5e-04
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	4e-11
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-10
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-10
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-05
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-10
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	1e-09
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	1e-10
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	0.002
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	1e-10
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	5e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-10
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	2e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	8e-10
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-08
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	1e-09
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-05
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	3e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-09
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	8e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	1e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	6e-09
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	3e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	1e-08
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	8e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	4e-05
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-08
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-06
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	3e-08
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	4e-05
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	4e-08
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.002
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	5e-08
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	6e-08
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	2e-06
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.003
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-06
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	0.003
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-07
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	5e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	5e-07
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	0.002
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	6e-07
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	1e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	5e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	8e-04
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	2e-06
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	1e-05
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	3e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	5e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	3e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	4e-06
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	5e-06
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	9e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	3e-05
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.002
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	9e-05
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.003
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	1e-04
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	1e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	4e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-04
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	2e-04
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.003
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	3e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	0.002
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	4e-04
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	5e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	7e-04
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	0.001
d1d5mb1	98	b.1.1.2 (B:93-190) Class II MHC beta chain, C-term	0.002
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	0.002
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	0.004

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 5e-18
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           PQ+I     Q ++ G  V L    TG      +W      +             + +  S
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQES----EHMKVENSENGS 56

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
            + I + R E  G Y     N++GS+    ++ V D P  P 
Sbjct: 57  KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 98

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 2e-11
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           +       KV +G+   +   VT G  P+T +W+K    I     + + +S E  S L+I
Sbjct: 3   IIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENS-ENGSKLTI 60

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
                 H G YT +  N + S     NL V +
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTVVD 92

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 2e-15
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
            +     V  +C A GNP P + W  +G     +  + G  +      +   ++     
Sbjct: 15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV---VP 71

Query: 72 EDSGIYQCTATNRVGSQTHSADMRV 96
           D G Y C   N  GS  H+  + V
Sbjct: 72 SDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 8e-14
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           R   V + +    +C    G+P  T+ WLKNG     +  I          SL + ++  
Sbjct: 13  RLHAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 71

Query: 174 GHSGNYTCVASNTVASDNHSSNLRV 198
              GNYTCV  N   S NH+ +L V
Sbjct: 72  SDKGNYTCVVENEYGSINHTYHLDV 96

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 65.3 bits (158), Expect = 3e-14
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
          +  T   G  V+L C A G P P +SW  DG P   +         +  D  S + I +V
Sbjct: 13 VNATANLGQSVTLVCDADGFPEPTMSWTKDGEP--IENEEEDDEKHIFSDDSSELTIRNV 70

Query: 70 RVEDSGIYQCTATNRVGSQTHSADMRVYD 98
             D   Y C A N+ G Q  S  ++V+ 
Sbjct: 71 DKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.3 bits (119), Expect = 8e-09
 Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 2/92 (2%)

Query: 108 LVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI-RSSGEYTSSL 166
               +  +   + G    + C    G P  T+SW K+G PI ++ E        + +S L
Sbjct: 7   QARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSEL 65

Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
           +I  +       Y C+A N     + S +L+V
Sbjct: 66  TIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 64.8 bits (157), Expect = 3e-14
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
             ++ G  V++ C  TG P P++ W  +  PL+G R  +             + I  V+
Sbjct: 12 VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS---------GLVIKGVK 62

Query: 71 VEDSGIYQCTATNRVGSQTHSADMRV 96
            D G Y C ATN  G +     ++V
Sbjct: 63 NGDKGYYGCRATNEHGDKYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 52.5 bits (125), Expect = 8e-10
 Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 107 KLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSL 166
           K      + I V  G    + C VT G P   + W  N  P+               S L
Sbjct: 4   KYEQKPEKVIVVKQGQDVTIPCKVT-GLPAPNVVWSHNAKPLSGGRATV------TDSGL 56

Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
            I  +  G  G Y C A+N        + ++VN
Sbjct: 57  VIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238
           R     S L I  +  G  G Y C A+N        + ++VN
Sbjct: 48  RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 64.1 bits (155), Expect = 7e-14
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
           P+ I K     +  G   +  C    +  P ++W  D            +YM  +     
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE----LKQSVKYMKRYNGNDY 57

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG 101
            + I+ V+ +D G Y   A N  G++     + V     
Sbjct: 58  GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
              +V  G  A   C V     P  ++W K+   +    +   R +G     L+I  +  
Sbjct: 9   YGTEVGEGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKYMKRYNG-NDYGLTINRVKG 66

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
              G YT  A N+  +      L V  
Sbjct: 67  DDKGEYTVRAKNSYGTKEEIVFLNVTR 93

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.7 bits (89), Expect = 9e-05
 Identities = 11/45 (24%), Positives = 15/45 (33%)

Query: 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
           R N     L+I  +     G YT  A N+  +      L V    
Sbjct: 51  RYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 2e-13
 Identities = 19/94 (20%), Positives = 30/94 (31%), Gaps = 8/94 (8%)

Query: 8  KFIQQ----TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISH 63
          + + +    T+  G      C   G P P ++W   G           ++        S 
Sbjct: 1  RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV----LSTSARHQVTTTKYKST 56

Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
            ISSV+  D G Y     N  G Q     + + 
Sbjct: 57 FEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 2/87 (2%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
           RS+ V+ G+ A   C    G+P  T++WL+ G  + + A   + ++   ++   I+++  
Sbjct: 7   RSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE-ISSVQA 64

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
              GNY+ V  N+         L + +
Sbjct: 65  SDEGNYSVVVENSEGKQEAEFTLTIQK 91

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 8e-04
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 214 HSGNYTCVASNTVASDNHSSNLRV 237
             GNY+ V  N+         L +
Sbjct: 66  DEGNYSVVVENSEGKQEAEFTLTI 89

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 2e-13
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 3/94 (3%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
          P++  +   QT+  G     +    G P P   W  +G  +         Y     D + 
Sbjct: 5  PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKI---ERSDRIYWYWPEDNVC 61

Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
           + I  V  EDS      A N  G  +  A + V
Sbjct: 62 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 3e-09
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           +    +S  V  G  A  +  V  G P     W KNG+ I     I      +    L I
Sbjct: 7   IFERIQSQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVI 65

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
             ++   S +    A N     +  + L V
Sbjct: 66  RDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 62.6 bits (151), Expect = 3e-13
 Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
          P      +   +  G      C   G P P + W  D  P    +      +    +   
Sbjct: 9  PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNP---VKESRHFQIDYDEEGNC 65

Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
           + IS V  +D   Y C A N +G  T +A++ V
Sbjct: 66 SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 1/89 (1%)

Query: 110 TSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIA 169
           T     ++V  G  A   C V  G P   + W K+  P+       I    E   SL+I+
Sbjct: 12  TKTILDMEVVEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTIS 70

Query: 170 TLSTGHSGNYTCVASNTVASDNHSSNLRV 198
            +       YTC A N++     ++ L V
Sbjct: 71  EVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 214 HSGNYTCVASNTVASDNHSSNLRV 237
               YTC A N++     ++ L V
Sbjct: 76  DDAKYTCKAVNSLGEATCTAELLV 99

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.0 bits (147), Expect = 8e-13
 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 8/94 (8%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
          P  +          G  +   C+A+G P P + W  DG PLA    +      L      
Sbjct: 2  PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELR----- 56

Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
              S + +EDSG+YQC A N+ G+   SA++ V
Sbjct: 57 ---FSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.7 bits (89), Expect = 7e-05
 Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 8/85 (9%)

Query: 161 EYTSSLSIATLSTGHSGNYTCVASNT--------VASDNHSSNLRVNEYTSSLSIATLST 212
           ++   ++      G    ++CVAS                +S  R+      L  + L  
Sbjct: 3   DWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVL 62

Query: 213 GHSGNYTCVASNTVASDNHSSNLRV 237
             SG Y CVA N   +   S+ L V
Sbjct: 63  EDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 60.2 bits (145), Expect = 2e-12
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 11/96 (11%)

Query: 3  PQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
          P +  KF        G  V+L+C A GNP P I W          R + G   S      
Sbjct: 5  PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW----------RKLDGSQTSKWLSSE 54

Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
            ++I +V  ED G Y+C A N  G  T+   + ++
Sbjct: 55 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.5 bits (112), Expect = 6e-08
 Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 8/93 (8%)

Query: 107 KLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSL 166
            +           +G    ++C    G+P   I W K                      L
Sbjct: 6   SIKAKFPADTYALTGQMVTLECFAF-GNPVPQIKWRKLD-------GSQTSKWLSSEPLL 57

Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
            I  +     G Y C A N    D +   + ++
Sbjct: 58  HIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.0 bits (90), Expect = 5e-05
 Identities = 13/75 (17%), Positives = 20/75 (26%), Gaps = 6/75 (8%)

Query: 170 TLSTGHSGNYTCVASN------TVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS 223
              TG      C A             + S   +       L I  +     G Y C A 
Sbjct: 16  YALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 75

Query: 224 NTVASDNHSSNLRVN 238
           N    D +   + ++
Sbjct: 76  NIKGRDTYQGRIIIH 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.2 bits (142), Expect = 4e-12
 Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
          Q  + G    + C    +  P I WK  G  +   + V    +S +     ++ I  ++ 
Sbjct: 11 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN-----YLQIRGIKK 65

Query: 72 EDSGIYQCTATNRVGSQTHSADMRV 96
           D G Y+C        + +  D++V
Sbjct: 66 TDEGTYRCEGRILARGEINFKDIQV 90

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 8e-12
 Identities = 18/111 (16%), Positives = 30/111 (27%), Gaps = 25/111 (22%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVM---------------------- 50
            +  G  + L    +G+P P + W+                                   
Sbjct: 20  VVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLC 79

Query: 51  ---GQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD 98
              G+         S   +     ED G+Y  T  N VG    +  ++V D
Sbjct: 80  ETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 1e-10
 Identities = 19/133 (14%), Positives = 38/133 (28%), Gaps = 12/133 (9%)

Query: 105 DVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS 164
            +        +I V +G++  +   ++ GDP  T+ W K               + E T 
Sbjct: 8   HLDCPGRIPDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQGNKAPARPAPDAPEDT- 65

Query: 165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224
                        +        +        +   +  S  ++        G YT    N
Sbjct: 66  ----------GDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN 115

Query: 225 TVASDNHSSNLRV 237
            V  D  +  ++V
Sbjct: 116 PVGEDQVNLTVKV 128

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 2e-11
 Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQ---------YMSLHGDVIS 62
            +   G  V   C    +  PHI W              G           ++     I 
Sbjct: 15  ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIE 74

Query: 63  HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
            + I +V  ED+G Y C A N +G   HSA + V
Sbjct: 75  VLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 4e-09
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 13/103 (12%)

Query: 108 LVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI------------T 155
           L      +     G      C V   D    I W+K+     S                 
Sbjct: 7   LQAGLPANASTVVGGDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAG 65

Query: 156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
           + ++ +    L I  ++   +G YTC+A N++    HS+ L V
Sbjct: 66  VNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 3e-11
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 1/83 (1%)

Query: 20  VSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78
             +     GNP P + W  +G  L          +++ H +    + + +    ++G Y 
Sbjct: 19  WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 78

Query: 79  CTATNRVGSQTHSADMRVYDAPG 101
             A N  G             PG
Sbjct: 79  LIAKNEYGKDEKQISAHFMGWPG 101

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 5e-04
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSD----AEITIRSSGEYTSSLSIATLSTGH 175
           S     +   V  G+P   + W  NG  +        +I + +  EY   L +   +  +
Sbjct: 15  SDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMN 73

Query: 176 SGNYTCVASNTVASDNHSSNLRVNE 200
           +G+YT +A N    D    +     
Sbjct: 74  NGDYTLIAKNEYGKDEKQISAHFMG 98

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.9 bits (136), Expect = 4e-11
 Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 5/99 (5%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMS----LH 57
           P      +  ++  G    L C    G+P    SW  DG  +        +         
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 58  GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
                 +    V   DSG Y C A N  G+   S    +
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (131), Expect = 2e-10
 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYT----- 163
             + S    V  G+RA + C    G PP   SW K+G+ +L+      R+    +     
Sbjct: 5   KPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDP 64

Query: 164 --SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY 201
               L    ++   SG Y C A N   +   S    ++  
Sbjct: 65  KSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 104

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 1e-10
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 3/96 (3%)

Query: 6   IYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDV-ISH 63
           I +  + ++  G P  L+C        PH++W                      ++    
Sbjct: 7   IKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFI 66

Query: 64  VNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYD 98
           ++   V   D+G Y+C+A  +    ++HS  + V D
Sbjct: 67  LHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTD 102

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 105 DVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA----EITIRSSG 160
           DV+L         + +GD   ++C V        ++W K                     
Sbjct: 2   DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDN-HSSNLRVNE 200
                L    +    +G+Y C A+        HS+ L V +
Sbjct: 62  ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTD 102

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 1e-10
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMS---LHG 58
           P      I  +   G    L C    G+P    +W  DG  +  +      + +   +  
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 59  DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
                +    +   D+G Y C A N  G+   S  +R+
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRM 100

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 1e-09
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG------EY 162
             + +       G+RA + C    G PP   +W K+G+ + ++ + T   S         
Sbjct: 5   KPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPT 64

Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY 201
           T  L    LS   +G Y+C A N   +   S+ +R+   
Sbjct: 65  TGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 103

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (132), Expect = 1e-10
 Identities = 15/91 (16%), Positives = 33/91 (36%)

Query: 15  QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDS 74
           +      ++ +  GNP P + W  +G PL   + +  +Y          +  +     ++
Sbjct: 15  ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNN 74

Query: 75  GIYQCTATNRVGSQTHSADMRVYDAPGQPQD 105
           G Y   A N +G+   + +      P    +
Sbjct: 75  GNYTLIAKNPLGTANQTINGHFLKEPFPVDE 105

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 114 RSIKVHSGDRAGVQCL--VTKGDPPLTISWLKNGLPILSDA---EITIRSSGEYTSSLSI 168
           R + +   +     C+  V +G+PP T+ WL NG P+           +        L  
Sbjct: 7   RVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLF 66

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
              +  ++GNYT +A N + + N + N    +
Sbjct: 67  NKPTHYNNGNYTLIAKNPLGTANQTINGHFLK 98

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 10/51 (19%), Positives = 18/51 (35%)

Query: 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
           +             L     +  ++GNYT +A N + + N + N      P
Sbjct: 50  HVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 100

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 1e-10
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           T+  G PV L C   G   P I W  DG                    I  +++ SV  
Sbjct: 6  LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAV--VQNLDQLYIPVSEQHWIGFLSLKSVER 63

Query: 72 EDSGIYQCTATNRVGSQT 89
           D+G Y C   +   ++ 
Sbjct: 64 SDAGRYWCQVEDGGETEI 81

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 5e-06
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 101 GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160
           G P  +           V  G    + C V  G     I W+K+G  + +  ++ I  S 
Sbjct: 1   GAPVKLT----------VSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSE 49

Query: 161 -EYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRV 198
             +   LS+ ++    +G Y C   +   ++ +    L V
Sbjct: 50  QHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 2e-10
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 8/101 (7%)

Query: 12  QTLQPGPPVSLKCI---ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV---ISHVN 65
             L     +   CI     G P P + W  +G  L    F+  +++    +       + 
Sbjct: 7   VQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLR 66

Query: 66  ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP--GQPQ 104
           ++     ++G Y   A N  G  + S      D P    P+
Sbjct: 67  LNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 114 RSIKVHSGDRAGVQCL--VTKGDPPLTISWLKNGLPILSDAEITIR------SSGEYTSS 165
            S+++H+       C+     G P  ++ WL NG  +   + I         +       
Sbjct: 5   ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64

Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
           L +   +  ++GNYT +A+N     + S      +
Sbjct: 65  LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 99

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 8e-10
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 106 VKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSS 165
           + +     RS  V  G      C      P  T+ W +     L    +       +   
Sbjct: 2   IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD------FNGI 55

Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
           L+I  +    +G Y C  SN  A D  ++ L V
Sbjct: 56  LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 1e-08
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 12 QTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
          Q+++PG  V+  C A + +P   + W          R +         D    + I +V+
Sbjct: 12 QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM---------DFNGILTIRNVQ 62

Query: 71 VEDSGIYQCTATNRVGSQTHSADMRV 96
            D+G Y CT +N       +A + V
Sbjct: 63 PSDAGTYVCTGSNMFAMDQGTATLHV 88

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 1e-09
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 12  QTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN--- 65
            T++ G  ++             P I W    +     +      +    +  S V    
Sbjct: 10  GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 69

Query: 66  --ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDV 106
             I   +   +G Y+C  T +    + S D+ V+++ G   ++
Sbjct: 70  MQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 112

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 3e-05
 Identities = 12/55 (21%), Positives = 19/55 (34%)

Query: 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGP 245
             +       YT  + I       +GNY C  +     D+ S +L V+      P
Sbjct: 56  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 110

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 24/101 (23%), Positives = 34/101 (33%), Gaps = 10/101 (9%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPL--TISWLKNGLPILSDAEITI--------RSSGEYT 163
           +   V  G+       V   D     TI W K     L+              R S  YT
Sbjct: 8   QGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYT 67

Query: 164 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
             + I       +GNY C  +     D+ S +L V+E T +
Sbjct: 68  FEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 3e-09
 Identities = 11/96 (11%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 12  QTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDR-----FVMGQYMSLHGDVISH 63
             +  G  ++      G      P + W    +     +      +   Y       +  
Sbjct: 14  GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73

Query: 64  VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDA 99
           ++I+  +   +G Y+C  + +      + ++ V++A
Sbjct: 74  LHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA 109

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 8e-06
 Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 12/98 (12%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPL---TISWLKNGLPILSDAEITI--------RSSGEY 162
           +  +V  G           G   L    + W K     LS              R+S  Y
Sbjct: 12  QDGEVTVGGSITFSA-RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70

Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
              L I       +G Y C  S     D  + NL V+E
Sbjct: 71  LFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 12/60 (20%), Positives = 16/60 (26%)

Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237
                        + S +     Y   L I       +G Y C  S     D  + NL V
Sbjct: 47  VDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 6e-09
 Identities = 13/80 (16%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
            +  G   + +C A G         L G  +        +  S    + S   + +   
Sbjct: 11 VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFN-VVNTTK 69

Query: 72 EDSGIYQCTATNRVGSQTHS 91
           D+G Y+C      G    +
Sbjct: 70 RDAGKYRCMIRTEGGVGISN 89

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI--LSDAEITIRSSGEYTSSLSIATL 171
           ++++V++G  A  QC    G           G+ +      EI + SS  + +S ++   
Sbjct: 9   QNVEVNAGQFATFQCSAI-GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNT 67

Query: 172 STGHSGNYTCVASNTVASDNHSS-NLRV 198
           +   +G Y C+          +   L V
Sbjct: 68  TKRDAGKYRCMIRTEGGVGISNYAELVV 95

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (117), Expect = 1e-08
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
          P+++    +  ++ G   +L+    G P P  +W +          +  + +       +
Sbjct: 3  PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSG----AALAPELLVDAKSSTT 58

Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
           +   S +  DSG Y+    N +G      ++ V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.8 bits (89), Expect = 8e-05
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           + + SR IK+ +G    ++     G P  T +W           E+ + +    T+S+  
Sbjct: 5   ILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAK-SSTTSIFF 62

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
            +     SGNY     N +  D     + V
Sbjct: 63  PSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 3  PQLIYKFIQQ--TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
           + + +++ +    + G    + C+   NP  + ++  +G  + G+        +     
Sbjct: 2  GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG- 60

Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRV 96
             +   +   ED G+Y C   N VG  Q HS  + V
Sbjct: 61 -KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.9 bits (92), Expect = 4e-05
 Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEIT-IRSSGEYTSSLSIATL 171
           S+ +   +GD   + C+    +P    ++ KNG  +  + E    R +      L   T 
Sbjct: 10  SKDMMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 68

Query: 172 STGHSGNYTCVASNTVASDN-HSSNLRV 198
                G YTC   N V     HS  L V
Sbjct: 69  LPEDEGVYTCEVDNGVGKPQKHSLKLTV 96

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 3e-08
 Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 4/98 (4%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVM---GQYMSLHGD 59
           P++      + +  G    L C +   P                  +     ++      
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 60  VISHVNISSVRVED-SGIYQCTATNRVGSQTHSADMRV 96
             S ++I ++ +E   G Y+C  T+  GS      +RV
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-06
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 6/96 (6%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL------SDAEITIRSSGEY 162
           V +   S  ++ G+ A + C      P    +W K            S++   + SS   
Sbjct: 5   VKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGR 64

Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
           +             G Y C  +++  SD     LRV
Sbjct: 65  SELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.4 bits (114), Expect = 3e-08
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDS 74
               V+L C A  NP     WK++G         MG            V  + V+ +D+
Sbjct: 20 SAEEKVTLTCRARANPPATYRWKMNGTE-----LKMGPDSRYRLVAGDLVISNPVKAKDA 74

Query: 75 GIYQCTATNRVGSQT 89
          G YQC ATN  G+  
Sbjct: 75 GSYQCVATNARGTVV 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.5 bits (91), Expect = 4e-05
 Identities = 17/98 (17%), Positives = 32/98 (32%), Gaps = 11/98 (11%)

Query: 102 QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161
           QP        ++        ++  + C     +PP T  W  NG  +    +   R    
Sbjct: 10  QPAHTLFPEGSA-------EEKVTLTCRAR-ANPPATYRWKMNGTELKMGPDSRYRL--V 59

Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
               +    +    +G+Y CVA+N   +   S    + 
Sbjct: 60  AGDLVISNPVKAKDAGSYQCVATNARGTV-VSREASLR 96

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 4e-08
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 10/104 (9%)

Query: 3   PQLIYKFIQQ-TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--------RFVMGQY 53
           P ++    +   +  G  + L C  TG  +    WK +G  +  D          V    
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 54  MSLHGDVISHVNISSVRVEDSGI-YQCTATNRVGSQTHSADMRV 96
                 +I+ +NIS +        + C A N  G       +  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 30/134 (22%)

Query: 107 KLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSL 166
            +V+  + +++V  G +  + C    G       W  NG  I  D  +            
Sbjct: 3   VIVSPANETMEVDLGSQIQLIC-NVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSV---- 57

Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSG-NYTCVASNT 225
                                    + +N R +   + L+I+ + +      +TC A NT
Sbjct: 58  ------------------------ENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNT 93

Query: 226 VASDNHSSNLRVNV 239
              D     L   V
Sbjct: 94  HGIDAAYIQLIYPV 107

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 5e-08
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 9  FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISS 68
          + Q   + G    LKC    N                +  +  +          ++ I +
Sbjct: 4  YRQHFFKHGGTAELKCSQKSNLARVFWKF-------QNGVLKAESPKYGLMGRKNLLIFN 56

Query: 69 VRVEDSGIYQCTATNRVGSQTHSADMRVY 97
          +   DSG+YQC +  RV ++T    +  +
Sbjct: 57 LSEGDSGVYQCLSEERVKNKTVFQVVAKH 85

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 6e-08
 Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 1/94 (1%)

Query: 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL 171
               +   + +     C +   +   TI+W K+        E   R        L     
Sbjct: 8   EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK-LWFVPA 66

Query: 172 STGHSGNYTCVASNTVASDNHSSNLRVNEYTSSL 205
               SG+Y CV  N+        + +  E   +L
Sbjct: 67  KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNL 100

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 12/83 (14%), Positives = 19/83 (22%), Gaps = 5/83 (6%)

Query: 17 GPPVSLKC-IATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG 75
                 C +        I+W  D            +       +         +VEDSG
Sbjct: 17 NEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFV----PAKVEDSG 72

Query: 76 IYQCTATNRVGSQTHSADMRVYD 98
           Y C   N           +  +
Sbjct: 73 HYYCVVRNSSYCLRIKISAKFVE 95

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 154 ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTG 213
           I + S+ E             H G  T    ++    +     R++++   L        
Sbjct: 11  ILVSSANE-IDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVE 69

Query: 214 HSGNYTCVASNTVASDNHSSNLRV 237
            SG+Y CV  N+        + + 
Sbjct: 70  DSGHYYCVVRNSSYCLRIKISAKF 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 6/86 (6%)

Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
           + +V  G +  +   +   D    + WLKNG  I       I  S     +L+I+  S  
Sbjct: 15  AYQVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLA 72

Query: 175 HSGNYTCVASNTVASDNHSSNLRVNE 200
               Y CV          S+ L V E
Sbjct: 73  DDAAYQCVVGGEKC----STELFVKE 94

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 12/77 (15%), Positives = 21/77 (27%), Gaps = 4/77 (5%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
             +  G  + L           + W  +G      +    +Y+         + IS   
Sbjct: 15 AYQVSKGHKIRLTVELAD-HDAEVKWLKNGQE---IQMSGSKYIFESIGAKRTLTISQCS 70

Query: 71 VEDSGIYQCTATNRVGS 87
          + D   YQC       S
Sbjct: 71 LADDAAYQCVVGGEKCS 87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 7/94 (7%)

Query: 108 LVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS-SL 166
           +VT        + G+R  ++C V   +    + W KNG  I+   +   R   E     L
Sbjct: 2   MVTKQLEDTTAYCGERVELECEV--SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 59

Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
            I   +   +  Y+ + +   +    S+ L V+ 
Sbjct: 60  IIEGATKADAAEYSVMTTGGQS----SAKLSVDL 89

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 3/76 (3%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           T   G  V L+C        ++ W  +G  +        +        I  + I     
Sbjct: 10 TTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI--LIIEGATK 66

Query: 72 EDSGIYQCTATNRVGS 87
           D+  Y    T    S
Sbjct: 67 ADAAEYSVMTTGGQSS 82

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 13/79 (16%)

Query: 163 TSSLSIATLSTGHSGNYTCVASNTVA-------------SDNHSSNLRVNEYTSSLSIAT 209
           T  L   T   G      C  S   A                    +RV      L I  
Sbjct: 4   TKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEG 63

Query: 210 LSTGHSGNYTCVASNTVAS 228
            +   +  Y+ + +   +S
Sbjct: 64  ATKADAAEYSVMTTGGQSS 82

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 4e-07
 Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 17/85 (20%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           T       +  C A GNP P +    D                     +      +V  
Sbjct: 14 WTWPENSQQTPMCQAWGNPLPELKCLKD-----------------GTFPLPIGESVTVTR 56

Query: 72 EDSGIYQCTATNRVGSQTHSADMRV 96
          +  G Y C A +  G  T    + V
Sbjct: 57 DLEGTYLCRARSTQGEVTREVTVNV 81

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 5e-04
 Identities = 12/87 (13%), Positives = 21/87 (24%), Gaps = 15/87 (17%)

Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
            +       +    C    G+P   +  LK+                         T++ 
Sbjct: 12  GNWTWPENSQQTPMCQA-WGNPLPELKCLKD--------------GTFPLPIGESVTVTR 56

Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
              G Y C A +T         + V  
Sbjct: 57  DLEGTYLCRARSTQGEVTREVTVNVLS 83

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 5e-07
 Identities = 23/102 (22%), Positives = 34/102 (33%), Gaps = 4/102 (3%)

Query: 3   PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHGD 59
           P +I     Q    G    +KC     P P          +           + +S    
Sbjct: 7   PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 66

Query: 60  VISHVNISSVRVE-DSGIYQCTATNRVGSQTHSADMRVYDAP 100
           VIS + IS++       IY CTA N  GS T    ++   + 
Sbjct: 67  VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 108

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 0.002
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           + S++++     G++  ++C +    PP  I+W      + S            T    I
Sbjct: 9   IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVI 68

Query: 169 ATL------STGHSGNYTCVASNTVASDNHSSNLRV 198
           +TL             Y C A N+  SD     L+ 
Sbjct: 69  STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 104

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 44.7 bits (104), Expect = 6e-07
 Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 4/87 (4%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
          P L  +  +   +   P  L+CI  GN                  +   ++ +       
Sbjct: 3  PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDG----KSYNWQEHNAALRKDEG 58

Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQT 89
           +     +  D G YQC A    G  +
Sbjct: 59 SLVFLRPQASDEGHYQCFAETPAGVAS 85

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 9/95 (9%), Positives = 24/95 (25%), Gaps = 6/95 (6%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
           ++    +      G  ++L+C   G  P   ++  L           + +  ++     
Sbjct: 5  ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLR-----GEKELKREPAVGEPAE 59

Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
              +   R      + C     +  Q        
Sbjct: 60 VTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENT 94

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 5e-06
 Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 9/100 (9%)

Query: 103 PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSDAEITIRSSG 160
           P+ V+L    S       G +  ++C V  G P   LT+  L+    +  +  +   +  
Sbjct: 4   PERVELAPLPSW---QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPA-- 58

Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
               + ++      H   ++C     +           + 
Sbjct: 59  --EVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSA 96

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 8e-04
 Identities = 3/52 (5%), Positives = 11/52 (21%)

Query: 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI 243
                       + ++      H   ++C     +           + P  +
Sbjct: 49  KREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQL 100

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-06
 Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 15/92 (16%)

Query: 12 QTLQPGPPVSLKC------IATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHV 64
          Q L       L C          N  P + W  D  PL   +    G    L        
Sbjct: 9  QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLI------- 61

Query: 65 NISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
           + +V  +  G Y C A+     + +     +
Sbjct: 62 -VMNVAEKHRGNYTCHASYTYLGKQYPITRVI 92

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 112 NSRSI---KVHSGDRAGVQCLVTK-----GDPPLTISWLKNGLPILSDAEITIRSSGEYT 163
           N+++I   K+      G+ C   +      +    + W K+  P+L D            
Sbjct: 2   NAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--- 58

Query: 164 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
             L +  ++  H GNYTC AS T     +     + 
Sbjct: 59  -RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 93

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 3e-06
 Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 5/97 (5%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPLAGDRFVMGQYMSLHGD 59
           Q+I       +  G   +++C         +  +        L  + F           
Sbjct: 3  RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE-- 60

Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
            +  N ++ R +    + C A   + S+  +   + 
Sbjct: 61 ATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKH 97

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 5e-06
 Identities = 13/101 (12%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 103 PQDVKLVTSNSRSIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSG 160
           P+ V L    +    V  G    ++C V   +    LT+   +    +  +       + 
Sbjct: 2   PRQVILTLQPTL---VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAP 58

Query: 161 EYTS-SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
           +  + + +          N++C+A   + S   +   + + 
Sbjct: 59  QEATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSA 99

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 3e-06
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           T  PG  V+L C             +        +   G + S    +   + + SV++
Sbjct: 16 LTSLPGDSVTLTCPGVEPEDNATVHWVL------RKPAAGSHPSRWAGMGRRLLLRSVQL 69

Query: 72 EDSGIYQCTATNRVGSQTH 90
           DSG Y C    R     H
Sbjct: 70 HDSGNYSCYRAGRPAGTVH 88

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 4e-06
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 11/100 (11%)

Query: 100 PGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS 159
              P            +    GD   + C   + +   T+ W+                 
Sbjct: 4   RRCPA----QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA----GSHPSRW 55

Query: 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
                 L + ++    SGNY+C  +   A    + +L V+
Sbjct: 56  AGMGRRLLLRSVQLHDSGNYSCYRAGRPAG---TVHLLVD 92

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 5e-06
 Identities = 17/94 (18%), Positives = 25/94 (26%), Gaps = 5/94 (5%)

Query: 3  PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
          P L  +    ++  G  V L+C   G       W L                S     + 
Sbjct: 3  PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ-----SATVMKSGGLPSLG 57

Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
              +     +     C A N VG    S  + V
Sbjct: 58 LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 9e-04
 Identities = 16/91 (17%), Positives = 25/91 (27%), Gaps = 3/91 (3%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           +     +  V  GD   +     +G       W+   L     A +              
Sbjct: 5   LKVQVPNASVDVGDDV-LLRCQVEGRGLEQAGWILTELEQ--SATVMKSGGLPSLGLTLA 61

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
              S  +  N TC A N V     S  + V+
Sbjct: 62  NVTSDLNRKNVTCWAENDVGRAEVSVQVNVS 92

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 3e-05
 Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 4/88 (4%)

Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN----ISS 68
           +     + L C  +G  +P + WK              Q  + + D ++  +     SS
Sbjct: 12 QVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSS 71

Query: 69 VRVEDSGIYQCTATNRVGSQTHSADMRV 96
          V  +D+G Y C  +   G       + +
Sbjct: 72 VTRKDNGEYTCMVSEEGGQNYGEVSIHL 99

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
           RV   +S ++ ++++   +G YTC+ S     +    ++ + V
Sbjct: 59  RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.9 bits (89), Expect = 9e-05
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 8   KFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNI 66
           K  ++T   G P  L C+       P I+WK        +  V      +      ++  
Sbjct: 8   KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYF 67

Query: 67  SSVRVEDS---GIYQCTATNRVGSQTHSADMRVYDAPGQPQD 105
           + V  ED      Y CTA N    +     +  Y+  G  +D
Sbjct: 68  TIVTKEDVSDIYKYVCTAKNAAVDE--EVVLVEYEIKGVTKD 107

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 6/87 (6%)

Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS 172
           +       G    + C++    P   I+W K       +A++T                +
Sbjct: 9   THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFT 68

Query: 173 T------GHSGNYTCVASNTVASDNHS 193
                       Y C A N    +   
Sbjct: 69  IVTKEDVSDIYKYVCTAKNAAVDEEVV 95

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 10/52 (19%), Positives = 18/52 (34%)

Query: 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI 243
                 + E   +L I  +     G YTC   +    +  +  L+V  P + 
Sbjct: 70  ELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW 121

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 33  HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSA 92
                 D       R          G+    + I +VR  D G Y C   +    +  + 
Sbjct: 52  RNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAV 111

Query: 93  DMRVYD-----APGQ 102
           +++V D      PG+
Sbjct: 112 ELKVEDPFYWINPGR 126

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 11/79 (13%), Positives = 18/79 (22%), Gaps = 11/79 (13%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
              Q G  + L+C +  +                  F              + +I    
Sbjct: 9  HLEFQEGETIVLRCHSWKDKPLVKVT-----------FFQNGKSKKFSRSDPNFSIPQAN 57

Query: 71 VEDSGIYQCTATNRVGSQT 89
             SG Y CT        +
Sbjct: 58 HSHSGDYHCTGNIGYTLYS 76

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           V      ++V  G+ A  +  +   +P +   W   G P+ +  +  I         L +
Sbjct: 4   VEKPLYGVEVFVGETAHFEIEL--SEPDVHGQWKLKGQPLTASPDCEIIED-GKKHILIL 60

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
                G +G  +  A+N  +    ++NL+V E
Sbjct: 61  HNCQLGMTGEVSFQAANAKS----AANLKVKE 88

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 4e-04
 Identities = 7/76 (9%), Positives = 17/76 (22%), Gaps = 5/76 (6%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
            +  G     +      P  H  W                   +       + + + ++
Sbjct: 11 VEVFVGETAHFEI-ELSEPDVHGQW----KLKGQPLTASPDCEIIEDGKKHILILHNCQL 65

Query: 72 EDSGIYQCTATNRVGS 87
            +G     A N   +
Sbjct: 66 GMTGEVSFQAANAKSA 81

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 7/81 (8%)

Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS------HVNISSVR 70
             V+     +  P   + WK     +A       +  S   + +        + I ++ 
Sbjct: 10 YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68

Query: 71 VEDSGIYQCTATNRVGSQTHS 91
            D   Y+  + N   +    
Sbjct: 69 SSDEDEYEMESPNITDTMKFF 89

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (85), Expect = 2e-04
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 1/88 (1%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
          Q  +  G      C   G+                        +  + D  S + I +  
Sbjct: 9  QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNAN 68

Query: 71 VEDSGIYQCTATNRVGS-QTHSADMRVY 97
          ++D+GIY+C  T   G+    + +++++
Sbjct: 69 IDDAGIYKCVVTAEDGTQSEATVNVKIF 96

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWL--KNGLPILSDAEITIRSSGEYTSSL 166
           V       ++  G+     C V        ISW          +   I++  + + +S+L
Sbjct: 3   VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 62

Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSS-NLRVNE 200
           +I   +   +G Y CV +    + + ++ N+++ +
Sbjct: 63  TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ 97

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 11/88 (12%), Positives = 24/88 (27%), Gaps = 10/88 (11%)

Query: 11 QQTLQPGPPVSLKC-IATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
             +  G    L C +A  +    + W                         S + + + 
Sbjct: 12 VVAVALGASRQLTCRLACADRGASVQW---------RGLDTSLGAVQSDTGRSVLTVRNA 62

Query: 70 RVEDSGIYQCTATNRVGSQTHSADMRVY 97
           +  +G   C  +    +  H+  + VY
Sbjct: 63 SLSAAGTRVCVGSCGGRTFQHTVQLLVY 90

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 18/90 (20%), Positives = 29/90 (32%), Gaps = 6/90 (6%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
           V      + V  G    + C +   D   ++ W         D  +    S    S L++
Sbjct: 6   VEPPEPVVAVALGASRQLTCRLACADRGASVQWRGL------DTSLGAVQSDTGRSVLTV 59

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
              S   +G   CV S    +  H+  L V
Sbjct: 60  RNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.9 bits (84), Expect = 4e-04
 Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 5/95 (5%)

Query: 12  QTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
             +  G  V   C      P     W L+ +P               G    ++ I+   
Sbjct: 14  VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG----NLYIAKTE 69

Query: 71  VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQD 105
             D G Y C AT+ +   T S   +        +D
Sbjct: 70  ASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAED 104

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 1/90 (1%)

Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
                  +K+  G      C      P L+  WL N  P    A+     S   T +L I
Sbjct: 7   SAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT-TGNLYI 65

Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
           A       GNY+C A++ +     S   + 
Sbjct: 66  AKTEASDLGNYSCFATSHIDFITKSVFSKF 95

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 7e-04
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 13  TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN----ISS 68
            +    PV L C  +G  +P + WK D            +  + + D ++ +       S
Sbjct: 15  RIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKS 74

Query: 69  VRVEDSGIYQCTATNRVGSQTHSADMRV 96
           V  ED+G Y C  +   G+      +++
Sbjct: 75  VTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 12  QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           + +  G P+ L+C    N   +              +        +     +++I++  V
Sbjct: 10  EVVMEGQPLFLRCHGWRNWDVYKVI-----------YYKDGEALKYWYENHNISITNATV 58

Query: 72  EDSGIYQCTATNRVGSQT-HSADMRVYDAP 100
           EDSG Y CT             ++ V  AP
Sbjct: 59  EDSGTYYCTGKVWQLDYESEPLNITVIKAP 88

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 121 GDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEIT-IRSSGEYTSSLSIATLSTGHSGN 178
                + C V    P  + + W +NG    +    T +  +G++T    +   +   SG 
Sbjct: 18  QHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGE 77

Query: 179 -YTCV 182
            YTC 
Sbjct: 78  VYTCQ 82

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.002
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 7/87 (8%)

Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
          +   Q G  VSL C  TG  +P  SW+                   +    S + ++ V 
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDS-------PLNGKVTNEGTTSTLTMNPVS 62

Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVY 97
            +   Y CTAT           + +Y
Sbjct: 63 FGNEHSYLCTATCESRKLEKGIQVEIY 89

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 13/78 (16%)

Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
           ++     V+LKC    +P  + +                   SL     S   I +  V
Sbjct: 15 YSVLEKDSVTLKCQGAYSPEDNSTQ-------------WFHNESLISSQASSYFIDAATV 61

Query: 72 EDSGIYQCTATNRVGSQT 89
           DSG Y+C       S  
Sbjct: 62 NDSGEYRCQTNLSTLSDP 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.77
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.75
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.75
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.75
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.74
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.73
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.69
d2avga1	110	Cardiac myosin binding protein C, different domain	99.69
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.69
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.68
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.68
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.68
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.67
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.66
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.65
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.64
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.64
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.63
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.63
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.63
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.63
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.63
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.63
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.62
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.62
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.62
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.62
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.62
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.61
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.6
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.6
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.6
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.59
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.58
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.58
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.57
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.57
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.57
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.56
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.56
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.56
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.55
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.55
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.55
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.55
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.55
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.55
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.54
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.53
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.53
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.53
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.53
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.52
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.52
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.51
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.51
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.51
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.5
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.5
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.5
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.49
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.49
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.49
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.49
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.49
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.47
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.47
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.46
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.46
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.46
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.45
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.45
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.45
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.44
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.43
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.43
d2avga1	110	Cardiac myosin binding protein C, different domain	99.42
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.42
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.41
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.41
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.41
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.4
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.39
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.39
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.39
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.39
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.39
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.38
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.38
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.38
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.38
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.36
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.35
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.35
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.34
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.34
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.33
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.32
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.32
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.3
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.3
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.3
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.3
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.27
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.27
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.25
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.24
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.24
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.23
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.19
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.15
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.15
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.14
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.13
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	99.11
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	99.09
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.09
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	99.08
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	99.07
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	99.05
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	99.04
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.03
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	99.03
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	99.02
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	99.02
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.02
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	99.01
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	99.01
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	99.0
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.99
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.99
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.98
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.98
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.97
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.97
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.96
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.95
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.95
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.95
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.95
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.95
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.95
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.94
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.93
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.93
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.92
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.92
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.92
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.92
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.92
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.91
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.91
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.9
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.9
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.9
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.9
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.89
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.89
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.89
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.89
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.88
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.87
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.87
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.86
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.86
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.84
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.84
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.84
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.84
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.84
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.82
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.82
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.82
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.81
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.8
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.8
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.8
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.8
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.79
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.79
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.79
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.78
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.77
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.77
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.76
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.76
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.76
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.75
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.74
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.73
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.73
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.7
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.69
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.69
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.69
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.68
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.68
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.67
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.66
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.66
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.65
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.64
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.64
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.64
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.63
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.62
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.61
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.61
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.6
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.6
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.59
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.58
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.58
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.58
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.57
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.57
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.57
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.55
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.54
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.54
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.54
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.54
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.53
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.53
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.53
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.52
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.52
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.52
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.51
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.49
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.48
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.48
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.47
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.45
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.45
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	98.45
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.45
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.44
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	98.43
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.43
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.42
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.42
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.42
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.41
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.4
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.4
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.4
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.4
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.39
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.38
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.37
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.36
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.36
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.35
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.35
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.33
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.33
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.33
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.33
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.33
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.33
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	98.32
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.31
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.31
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.31
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.31
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.31
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.31
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.31
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.3
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.3
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.29
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.29
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.29
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.29
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.28
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.28
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.28
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	98.27
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.27
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.27
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.27
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.27
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.27
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.27
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.27
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.26
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	98.25
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.25
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.24
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.24
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.24
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.24
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.24
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.23
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.23
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.23
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	98.22
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	98.22
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.22
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	98.22
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.22
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.22
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	98.22
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.21
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.21
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.21
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.21
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.2
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.2
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.2
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.2
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.2
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.2
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.19
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	98.19
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	98.19
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.19
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.19
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.19
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.18
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.18
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.18
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.18
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.18
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	98.17
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.17
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.16
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.16
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.16
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.16
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	98.16
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.16
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.15
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	98.15
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.15
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.15
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.15
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.14
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	98.13
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.13
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.12
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	98.12
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.12
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	98.11
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.11
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.1
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	98.1
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.09
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.09
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	98.09
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.09
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	98.09
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.09
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	98.09
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.08
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	98.08
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.08
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.08
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.07
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	98.07
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	98.07
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.07
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.07
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.07
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	98.07
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.07
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.07
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	98.06
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.05
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.05
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.05
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	98.05
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.05
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.05
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.04
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.04
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	98.04
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	98.03
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.03
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.03
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.03
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.03
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	98.02
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.0
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.0
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.0
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.0
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.99
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.99
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.99
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.98
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.98
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.97
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.97
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.97
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.96
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.96
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.96
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.96
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.95
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.95
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.95
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.94
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.93
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.93
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.92
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.92
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.92
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.91
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.91
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.9
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.9
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.89
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.89
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.89
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.88
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.88
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.88
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.87
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.87
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.87
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.87
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.85
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.85
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.85
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.83
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.82
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.8
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.77
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.75
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.75
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.75
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.74
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.72
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.72
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.72
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.7
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.7
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.67
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.64
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.64
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.58
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.58
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.57
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.56
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.56
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.55
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.51
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.44
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.42
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	97.39
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.37
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.36
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.31
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.25
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.24
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.2
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.19
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	97.18
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.17
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.16
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.15
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.14
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.11
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	97.09
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.08
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.07
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.05
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.05
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.05
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.04
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.04
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.0
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.99
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.97
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.96
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.95
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.94
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.9
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.9
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.89
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.89
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.88
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.88
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.87
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.86

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.3e-19  Score=110.74  Aligned_cols=96  Identities=24%  Similarity=0.358  Sum_probs=82.5

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      |.|+..|.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+. ..++.+     ......++|.|.+++..|+|.|+|.+
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C~a   75 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKV-----ENSENGSKLTILAARQEHCGCYTLLV   75 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEE-----EECSSEEEEEETTCCTTTCEEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEE-----EEecceeEEEEeeCCcccCEEEEEEE
Confidence            778888999999999999999999999999999999999887 344433     22334578999999999999999999


Q ss_pred             eCCCCceeeeeeEEEEcCCCCC
Q psy14540         82 TNRVGSQTHSADMRVYDAPGQP  103 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~  103 (291)
                      .|..|.....+.|.|.+.|.+|
T Consensus        76 ~N~~G~~~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          76 ENKLGSRQAQVNLTVVDKPDPP   97 (101)
T ss_dssp             ECSSCEEECCEEEEEECSCSCC
T ss_pred             EECCCEEEEEEEEEEEecCCCc
Confidence            9999999999999999887554

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.77  E-value=8.6e-19  Score=109.59  Aligned_cols=94  Identities=19%  Similarity=0.330  Sum_probs=80.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .|.|+..|.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.. .++.+     ......+.|.|.+++..|+|.|+|.
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C~   75 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMK-----RYNGNDYGLTINRVKGDDKGEYTVR   75 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBC-----CCSTTEEEEEESCCCSGGGSCEEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEE-----EecCCeeEEEeCCCceecCEEEEEE
Confidence            48999999999999999999999999999999999999999873 33322     2234557799999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +.|..|.....+.|.|...+
T Consensus        76 a~N~~G~~~~~~~l~V~~~~   95 (97)
T d1koaa1          76 AKNSYGTKEEIVFLNVTRHS   95 (97)
T ss_dssp             EEETTEEEEEEECCEEECSC
T ss_pred             EEECCCEEEEEEEEEEeecC
Confidence            99999988888888887543

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=4.3e-18  Score=106.57  Aligned_cols=93  Identities=24%  Similarity=0.357  Sum_probs=79.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|+..+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .+...    .....+.+.|.|.+++..|+|.|+|.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~----~~~~~~~~~L~I~~~~~~D~G~Y~c~   79 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYW----YWPEDNVCELVIRDVTGEDSASIMVK   79 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEE----EEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEE----EeccceEEEEEeccCccccCEEEEEE
Confidence            78999999999999999999999999999999999999999873 33222    12234557899999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEc
Q psy14540         81 ATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~   98 (291)
                      +.|..|.......|.|..
T Consensus        80 a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          80 AINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCcEEEEEEEEEEEE
Confidence            999999988888888864

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.75  E-value=4.7e-18  Score=107.25  Aligned_cols=93  Identities=24%  Similarity=0.474  Sum_probs=79.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|+++|..+.. .++..    .......++|.|.+++..|+|.|+|.
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~----~~~~~~~~~L~I~~~~~~D~G~Y~C~   83 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI----DYDEEGNCSLTISEVCGDDDAKYTCK   83 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEE----EECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeE----EEecCceeeeEecCCCHHhCEEEEEE
Confidence            68888899999999999999999999999999999999999873 33332    22345567899999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEc
Q psy14540         81 ATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~   98 (291)
                      +.|..|....++.|.|..
T Consensus        84 a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          84 AVNSLGEATCTAELLVET  101 (102)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCcEEEEEEEEEEEE
Confidence            999999988888888763

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.75  E-value=1.6e-18  Score=106.26  Aligned_cols=87  Identities=31%  Similarity=0.545  Sum_probs=73.2

Q ss_pred             CCCcceeecce-eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          1 SHPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         1 s~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      |+|.|+..|.. ..+.+|+++.|.|.+.+.|.+.+.|++++..+...+....      .   ..|.|.+++..|+|.|+|
T Consensus         1 saP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~------~---~~L~i~~v~~~d~G~Y~C   71 (89)
T d1biha4           1 SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVT------D---SGLVIKGVKNGDKGYYGC   71 (89)
T ss_dssp             EEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEE------T---TEEEESSCCSTTCEEEEE
T ss_pred             CCCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEEe------e---eeEEECCCChhhCEEEEE
Confidence            57999988755 5788999999999999999999999999999885544331      1   238999999999999999


Q ss_pred             EEeCCCCceeeeeeEEE
Q psy14540         80 TATNRVGSQTHSADMRV   96 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v   96 (291)
                      .+.|..|.....+.|.|
T Consensus        72 ~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          72 RATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999998887777766

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=2.9e-18  Score=105.00  Aligned_cols=87  Identities=32%  Similarity=0.635  Sum_probs=74.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .|.|+..|.+..+.+|+++.|.|.+.+.|.+.+.|+++|..+.. .++..     ..    ..|.|.+++.+|+|.|+|.
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~-----~~----~~L~i~~v~~~D~G~Y~C~   71 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-----SG----GELRFSKLVLEDSGMYQCV   71 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE-----ET----TEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeee-----ee----eeEEEEeecccCCEEEEEE
Confidence            48899999999999999999999999999999999999998873 33322     11    3589999999999999999


Q ss_pred             EeCCCCceeeeeeEEEE
Q psy14540         81 ATNRVGSQTHSADMRVY   97 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~   97 (291)
                      +.|..|.......|.|.
T Consensus        72 a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          72 AENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCEEEEEEEEEEE
Confidence            99999988888888775

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=2.8e-18  Score=106.33  Aligned_cols=90  Identities=18%  Similarity=0.318  Sum_probs=76.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|+..+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+. ..++..     ......+.|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~c~   76 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLV-----DAKSSTTSIFFPSAKRADSGNYKLK   76 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEE-----EEETTEEEEECTTBCGGGCEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeee-----cccccceeeccccccccccEEEEEE
Confidence            7999999999999999999999999999999999999998876 333322     1223446799999999999999999


Q ss_pred             EeCCCCceeeeeeEEE
Q psy14540         81 ATNRVGSQTHSADMRV   96 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v   96 (291)
                      +.|..|.....+.|.|
T Consensus        77 a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          77 VKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEE
Confidence            9999998888887776

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.73  E-value=5.7e-18  Score=104.40  Aligned_cols=89  Identities=25%  Similarity=0.410  Sum_probs=73.8

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      +|+..|.++.+.+|+++.|.|.+.+.|.+.+.|+++|..+.. .+...     ......+.|.|.+++..|+|.|+|.+.
T Consensus         1 rii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C~a~   75 (91)
T d1tnna_           1 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQV-----TTTKYKSTFEISSVQASDEGNYSVVVE   75 (91)
T ss_dssp             CCSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEE-----EECSSEEEEECSSCCSCCCEEEEEECB
T ss_pred             CEEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceee-----eeecceeEEeecCCCHHHCEEEEEEEE
Confidence            367788999999999999999999999999999999988873 33222     223345779999999999999999999


Q ss_pred             CCCCceeeeeeEEEE
Q psy14540         83 NRVGSQTHSADMRVY   97 (291)
Q Consensus        83 ~~~~~~~~~~~l~v~   97 (291)
                      |..|.....+.|.|.
T Consensus        76 N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          76 NSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             CSSCBCCEEEEEECC
T ss_pred             ECCCEEEEEEEEEEE
Confidence            999988888777764

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=4.6e-17  Score=102.23  Aligned_cols=95  Identities=29%  Similarity=0.477  Sum_probs=73.2

Q ss_pred             CCcceeecce--eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQ--QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~--~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.|...+..  .++..|+++.|.|.+.+.|.+.+.|+++|..+............  ....++|.|.+++.+|+|.|+|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~--~~~~~~L~I~~v~~~D~G~Y~C   80 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF--SDDSSELTIRNVDKNDEAEYVC   80 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEE--CTTSCEEEECSCCGGGCEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEe--ecCceEEEeCCCCcccCEEEEE
Confidence            6887765543  46788999999999999999999999999988733221111111  1223569999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEEc
Q psy14540         80 TATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~   98 (291)
                      .+.|..|.....+.|.|..
T Consensus        81 ~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          81 IAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEECCCEEEEEEEEEEEE
Confidence            9999999988888888864

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.69  E-value=1.6e-16  Score=101.61  Aligned_cols=97  Identities=25%  Similarity=0.342  Sum_probs=73.3

Q ss_pred             CCCcceee-cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-----C----eeEeceEEeeccceEEEEEEeecC
Q psy14540          1 SHPQLIYK-FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-----D----RFVMGQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         1 s~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-----~----~~~~~~~~~~~~~~~~~l~i~~~~   70 (291)
                      ++|.|... |.++++.+|+++.|.|.+.+.|.+.|.|++++.....     .    ...............+.|.|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            47888765 7889999999999999999999999999997654321     0    111111122233456889999999


Q ss_pred             CCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540         71 VEDSGIYQCTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        71 ~~d~G~y~C~~~~~~~~~~~~~~l~v~   97 (291)
                      ..|+|.|+|.+.|..|.....+.|.|+
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999999888888773

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-16  Score=100.50  Aligned_cols=96  Identities=11%  Similarity=0.257  Sum_probs=75.5

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCC---CCeeEEEECCeecC----CCeeEece-EEeeccceEEEEEEeecCCCCC
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLA----GDRFVMGQ-YMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~----~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      |.|+..|.+.++.+|++++|.|.+.+.|   .+.|.|++++....    ........ .........+.|.|.+++..|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            5788899999999999999999999877   57899999875432    11222211 1122233568899999999999


Q ss_pred             eEEEEEEeCCCCceeeeeeEEEEc
Q psy14540         75 GIYQCTATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~~~~l~v~~   98 (291)
                      |.|+|.+.|..|.....+.|.|.+
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEES
T ss_pred             cEEEEEEEECCCeEEEEEEEEEEe
Confidence            999999999999999999999875

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.3e-16  Score=100.64  Aligned_cols=97  Identities=16%  Similarity=0.212  Sum_probs=75.6

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCC---CCeeEEEECCeecC----CCeeEeceE-EeeccceEEEEEEeecCCCCCe
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLA----GDRFVMGQY-MSLHGDVISHVNISSVRVEDSG   75 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~----~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G   75 (291)
                      .|+..|.++++.+|++++|.|.+.+.|   .+.|.|+|++....    ...+..... ........+.|.|.+++..|+|
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            367889999999999999999999876   57899999875432    222222221 1222335578999999999999


Q ss_pred             EEEEEEeCCCCceeeeeeEEEEcCC
Q psy14540         76 IYQCTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        76 ~y~C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      .|+|.+.|..|..+..+.|.|...+
T Consensus        82 ~Y~C~a~N~~G~~~~~~~L~V~~~~  106 (113)
T d2dava1          82 NYRCEVTYKDKFDSCSFDLEVHEST  106 (113)
T ss_dssp             EEEEEEECSSCEEEECCEEEEECCC
T ss_pred             EEEEEEEeCCCEEEEEEEEEEEcCC
Confidence            9999999999999999999998665

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-16  Score=95.71  Aligned_cols=81  Identities=25%  Similarity=0.443  Sum_probs=65.5

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      |.|...|.+..+.+|+++.|.|.+.+.|.| .|+|+|||..+.....             ..+.|.....+|+|.|+|.+
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~-------------~~~~l~~~~~~d~G~Y~C~A   68 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-------------SPSVLNVTGVTQSTMFSCEA   68 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE-------------SSEEEEECCCSSCEEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC-------------cceEEecCCccccEEEEEEE
Confidence            889999999999999999999999998876 8999999998874321             11446667778999999999


Q ss_pred             eCCCCce-eeeeeEEE
Q psy14540         82 TNRVGSQ-THSADMRV   96 (291)
Q Consensus        82 ~~~~~~~-~~~~~l~v   96 (291)
                      .|..|.. ++.+.+.|
T Consensus        69 ~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          69 HNLKGLASSRTATVHL   84 (85)
T ss_dssp             EETTEEEECCCEEEEE
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            9988853 44555554

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-16  Score=99.82  Aligned_cols=95  Identities=18%  Similarity=0.251  Sum_probs=71.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecC--CCeeEeceEEeeccceEEEEEEeecC-CCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLA--GDRFVMGQYMSLHGDVISHVNISSVR-VEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y   77 (291)
                      ||.|...+....+.+|+.+.|.|.+.+.|.+ .+.|++++....  ........+........+.|.|.+++ ..|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            8999999999999999999999999998766 699999764332  00000011112233445789999998 4799999


Q ss_pred             EEEEeCCCCceeeeeeEEE
Q psy14540         78 QCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v   96 (291)
                      +|.+.|..|.....+.|.|
T Consensus        82 ~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          82 RCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEE
Confidence            9999999998888887776

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.7e-16  Score=95.76  Aligned_cols=88  Identities=23%  Similarity=0.376  Sum_probs=69.9

Q ss_pred             ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS   87 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~   87 (291)
                      .|.++++.+|+.+.|.|.+.+.|.+.+.|++++..+.......  .........+.|.|.+++.+|+|.|+|.+.|..|.
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~--~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   79 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLY--IPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGET   79 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEE--EEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTC
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeee--eeecccCceeeEEECCCCcccCEEEEEEEEECCCC
Confidence            4778899999999999999999999999999999887332211  12223445578999999999999999999998886


Q ss_pred             e-eeeeeEEEE
Q psy14540         88 Q-THSADMRVY   97 (291)
Q Consensus        88 ~-~~~~~l~v~   97 (291)
                      . +..+.|.|.
T Consensus        80 ~~S~~~~l~V~   90 (91)
T d1rhfa1          80 EISQPVWLTVE   90 (91)
T ss_dssp             EECCCEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            4 566777764

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=9.4e-17  Score=98.76  Aligned_cols=86  Identities=28%  Similarity=0.461  Sum_probs=69.3

Q ss_pred             CCcceee-cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYK-FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|... |....+.+|++++|.|.+.+.|.+.+.|++++........          .....|.|.+++.+|+|.|+|.
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~----------~~~~~L~I~~v~~~D~G~Y~C~   73 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWL----------SSEPLLHIQNVDFEDEGTYECE   73 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCS----------BSSSEEEECSCCGGGCEEEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEee----------eeeeEEEeCCCCccCCEEEEEE
Confidence            5777665 6888999999999999999999999999997654332110          0113589999999999999999


Q ss_pred             EeCCCCceeeeeeEEEE
Q psy14540         81 ATNRVGSQTHSADMRVY   97 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~   97 (291)
                      +.|..|.....+.|.|.
T Consensus        74 a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          74 AENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCCEEEEEEEEEEE
Confidence            99999988888888775

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.66  E-value=3.3e-16  Score=98.60  Aligned_cols=85  Identities=25%  Similarity=0.461  Sum_probs=62.4

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+....+..+.........|.|.++...|.|.|+|.|.|..|..
T Consensus        13 ~~~~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   91 (102)
T d1fhga_          13 KTILDMEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA   91 (102)
T ss_dssp             ECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             cCCCcEEEecCCcEEEEEEE-EeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEE
Confidence            44556788899999999999 68999999999999999887777665555555566666666666666666666666554


Q ss_pred             CCceEE
Q psy14540        191 NHSSNL  196 (291)
Q Consensus       191 ~~~~~~  196 (291)
                      ...+.|
T Consensus        92 ~~~~~L   97 (102)
T d1fhga_          92 TCTAEL   97 (102)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            444433

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.5e-16  Score=99.52  Aligned_cols=97  Identities=19%  Similarity=0.259  Sum_probs=72.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .|.|+..+...++.+|+++.|.|.+.+.| .|.+.|+|++..+. .................+.|.|.+++.+|+|.|+|
T Consensus         3 ~~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (104)
T d2aw2a1           3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRC   82 (104)
T ss_dssp             CEECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEE
T ss_pred             ccEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEE
Confidence            46677888889999999999999999977 58999999876553 11111111122233455779999999999999999


Q ss_pred             EEeCCCCce-eeeeeEEEEc
Q psy14540         80 TATNRVGSQ-THSADMRVYD   98 (291)
Q Consensus        80 ~~~~~~~~~-~~~~~l~v~~   98 (291)
                      .+.|..|.. +..+.|.|.+
T Consensus        83 ~A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          83 SANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEEETTEEEECCCEEEEEEC
T ss_pred             EEEcCCCeEEEEEEEEEEEE
Confidence            999988864 4567777754

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.4e-16  Score=94.03  Aligned_cols=87  Identities=14%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             CCcceeec-ceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKF-IQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~-~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +|.++..| ....+.+|+++.|.|.+. +.|.+.+.|++.+..+....         .....+.|+|.+++.+|+|.|+|
T Consensus         2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~---------~~~~~~~L~i~~v~~~D~G~Y~C   72 (90)
T d1gsma1           2 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQ---------SDTGRSVLTVRNASLSAAGTRVC   72 (90)
T ss_dssp             CSEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEE---------EESSEEEEEECSCCGGGCEEEEE
T ss_pred             cCcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeee---------ccCceeeEEcCccChhhCCcEEE
Confidence            35444444 456788999999999986 58889999999776654211         12234679999999999999999


Q ss_pred             EEeCCCCceeeeeeEEEE
Q psy14540         80 TATNRVGSQTHSADMRVY   97 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~   97 (291)
                      .+.+..+....++.|.|+
T Consensus        73 ~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          73 VGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEEEEC
Confidence            999988888888888774

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.7e-15  Score=95.23  Aligned_cols=96  Identities=16%  Similarity=0.258  Sum_probs=75.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|+....   -..++...|.|.+.|.|.+.+.|+++|..+.. ................+.|.|.+++..|+|.|+|.
T Consensus         4 pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (103)
T d1wwbx_           4 APTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI   80 (103)
T ss_dssp             CCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEE
T ss_pred             CCeeEEcCC---CccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEE
Confidence            677754222   24678888999999999999999999999873 33333333333444567899999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +.|..|..+..+.|.|...|
T Consensus        81 a~N~~G~~~~~~~v~V~~~P  100 (103)
T d1wwbx_          81 AKNEYGKDEKQISAHFMGWP  100 (103)
T ss_dssp             EECSSCEEEEEEEECCSCCC
T ss_pred             EeccCCEEEEEEEEEEEeCC
Confidence            99999999999988887765

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-16  Score=98.06  Aligned_cols=89  Identities=20%  Similarity=0.285  Sum_probs=73.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCe-EEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG-IYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~   80 (291)
                      .|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.....      .........|.|.+++.+|.| .|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~------~~~~~~~~~L~i~~~~~~d~G~~Y~C~   75 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM------KSGGLPSLGLTLANVTSDLNRKNVTCW   75 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC------CCCCSSEEEEEEESCCSTTTTCCEEEC
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeee------eeeeccceeEEEccccccccceEEEEE
Confidence            58999999999999999999999999999999999999876652111      112334467999999999999 79999


Q ss_pred             EeCCCCceeeeeeEEE
Q psy14540         81 ATNRVGSQTHSADMRV   96 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v   96 (291)
                      +.|..|....++.|.|
T Consensus        76 a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          76 AENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CEETTEECCEEECCCC
T ss_pred             EEcCCCEEEEEEEEEE
Confidence            9999998877776654

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.63  E-value=8.4e-16  Score=95.92  Aligned_cols=82  Identities=22%  Similarity=0.263  Sum_probs=56.9

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+....+.+|+.+.|.|.+ .|.|.+.+.|++++.++....+........+...|.|.++...|.|.|+|.+.|..|...
T Consensus        10 ~~~~~~v~~g~~v~l~c~v-~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~   88 (98)
T d1g1ca_          10 RIQSQTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETS   88 (98)
T ss_dssp             CCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CCCcEEEcCCCcEEEEEEE-EEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEE
Confidence            3455788899999999999 699999999999999998776655443333344566666665555555555555555443


Q ss_pred             Cce
Q psy14540        192 HSS  194 (291)
Q Consensus       192 ~~~  194 (291)
                      ...
T Consensus        89 ~~~   91 (98)
T d1g1ca_          89 SHA   91 (98)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            333

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.63  E-value=2.3e-16  Score=98.22  Aligned_cols=83  Identities=25%  Similarity=0.434  Sum_probs=65.8

Q ss_pred             eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCcee
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQT   89 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~   89 (291)
                      ...+.+|+++.|.|.+.+.|.+.+.|++||..+... +.....    .....++|.|.+++..|+|.|+|.+.|..|...
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK----VRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN   89 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCE----EEGGGTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEE----EcCCcEEEEECCCCcccCEEEEEEEEECCCEEE
Confidence            357889999999999999999999999999988732 211111    112225699999999999999999999999888


Q ss_pred             eeeeEEEE
Q psy14540         90 HSADMRVY   97 (291)
Q Consensus        90 ~~~~l~v~   97 (291)
                      ..+.|.|+
T Consensus        90 ~~~~l~Vl   97 (97)
T d3dara1          90 HTYHLDVV   97 (97)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            88888763

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.9e-15  Score=95.55  Aligned_cols=96  Identities=17%  Similarity=0.268  Sum_probs=71.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ||.|+....   ...+....|.|.+.|.|.+.+.|+++|+.+... .... ..........+.|.|.+++..|+|.|+|.
T Consensus         5 PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (105)
T d1wwca_           5 PPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHV-EYYQEGEISEGCLLFNKPTHYNNGNYTLI   80 (105)
T ss_dssp             CCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEE-EEEECSSEEEEEEEEESCCGGGCEEEEEE
T ss_pred             CCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceee-eEEeecccceEEEEEeecccccceEEEEE
Confidence            666653222   123445668889999999999999999998733 3222 22223334557899999999999999999


Q ss_pred             EeCCCCceeeeeeEEEEcCCC
Q psy14540         81 ATNRVGSQTHSADMRVYDAPG  101 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~  101 (291)
                      +.|..|..+..+.+.|...|.
T Consensus        81 a~N~~G~~~~~~~v~V~~~P~  101 (105)
T d1wwca_          81 AKNPLGTANQTINGHFLKEPF  101 (105)
T ss_dssp             EEETTEEEEEEEEECCSCCCC
T ss_pred             EEcCCCEEEEEEEEEEEeCCC
Confidence            999999999999888887664

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.63  E-value=6.5e-16  Score=94.98  Aligned_cols=83  Identities=27%  Similarity=0.555  Sum_probs=58.4

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+..+.+.+|+.+.|.|.+ .|.|.|.+.|+++|..+....+..+.... ....|.|.++...|+|.|+|.|.|..|...
T Consensus         5 ~P~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~g~~l~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   82 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLSTSARHQVTTTK-YKSTFEISSVQASDEGNYSVVVENSEGKQE   82 (91)
T ss_dssp             CCCCEECSSSSCCCEEEEC-CCSSCCCCEEESSSSTTCSSSSCEEEECS-SEEEEECSSCCSCCCEEEEEECBCSSCBCC
T ss_pred             CCcCEEEeCCCcEEEEEEE-EEEeCCeEEEEEeecccccccceeeeeec-ceeEEeecCCCHHHCEEEEEEEEECCCEEE
Confidence            4456789999999999999 79999999999999988776665544332 244566666666666666666666555554


Q ss_pred             CceEE
Q psy14540        192 HSSNL  196 (291)
Q Consensus       192 ~~~~~  196 (291)
                      ..+.|
T Consensus        83 ~~~~l   87 (91)
T d1tnna_          83 AEFTL   87 (91)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44433

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.5e-15  Score=94.26  Aligned_cols=89  Identities=27%  Similarity=0.396  Sum_probs=67.6

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....+..+....                               
T Consensus         6 ~p~~~~v~~G~~~~l~C~v-~g~p~p~v~W~k~~~~l~~~~~~~~~~~~-------------------------------   53 (101)
T d2cqva1           6 FPEDQKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVENSE-------------------------------   53 (101)
T ss_dssp             CCCSEEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEECS-------------------------------
T ss_pred             eCCcEEEeCCCcEEEEEEE-EecCCCEEEEEeCceeeccCCcEEEEEec-------------------------------
Confidence            3456788899999999999 68999999999999988766555433221                               


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                               ....|.|.++...|+|.|+|.|.|..|....++.|.|...|
T Consensus        54 ---------~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P   94 (101)
T d2cqva1          54 ---------NGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP   94 (101)
T ss_dssp             ---------SEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSC
T ss_pred             ---------ceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEEEEecC
Confidence                     12356777777777888888888888887788888887655

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=1.1e-15  Score=93.32  Aligned_cols=72  Identities=26%  Similarity=0.534  Sum_probs=47.8

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ..+....+..|+.+.|.|.+ .|.|.|.+.|+++|.++....+....     ...|.|..+..+|.|.|+|.|.|..|
T Consensus         6 ~~~~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~~G   77 (89)
T d1cs6a4           6 DVITDTEADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLASQNRIEVS-----GGELRFSKLVLEDSGMYQCVAENKHG   77 (89)
T ss_dssp             ECCCCEEEETTCCEEEECEE-EEESCCEEEEEETTEECCCCSSEEEE-----TTEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             EECCCEEECCCCcEEEEEEE-EEEcCCEEEEEEeeccccccceeeee-----eeeEEEEeecccCCEEEEEEEEeCCC
Confidence            34456788899999999999 69999999999999998776654432     11344444444444444444444333

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.62  E-value=2.1e-15  Score=93.77  Aligned_cols=87  Identities=20%  Similarity=0.285  Sum_probs=67.0

Q ss_pred             ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      -+.+..+.+|+++.|.|.+.+.|.+.+.|+++|..+.. ......   .......++|.|.+++.+|+|.|+|.+.|..|
T Consensus         9 ~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~---~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   85 (97)
T d1biha3           9 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRIT---RHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG   85 (97)
T ss_dssp             ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEE---SCSSSTTSEEEESSCCGGGCEEEEEEECCSSS
T ss_pred             CCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeee---eeeecCCCEEEEEeccccccEEEEEEEEECCC
Confidence            35678899999999999999999999999999998862 221111   11122235699999999999999999999988


Q ss_pred             ce-eeeeeEEEE
Q psy14540         87 SQ-THSADMRVY   97 (291)
Q Consensus        87 ~~-~~~~~l~v~   97 (291)
                      .. +.++.|+|+
T Consensus        86 ~~~s~s~~L~Vl   97 (97)
T d1biha3          86 KPQKHSLKLTVV   97 (97)
T ss_dssp             SCEEEEEEEEEE
T ss_pred             cEEEEEEEEEEC
Confidence            75 456777764

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=9.3e-16  Score=94.02  Aligned_cols=86  Identities=22%  Similarity=0.371  Sum_probs=68.2

Q ss_pred             CCccee-ecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIY-KFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~-~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.. .|....+.+|+++.|.|.+. +.|.+.+.|++++..+...+...     ..    ..|+|.+++..|+|.|+|
T Consensus         1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~-----~~----~~L~i~~v~~~d~G~Y~C   71 (89)
T d1gl4b_           1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD-----FN----GILTIRNVQPSDAGTYVC   71 (89)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE-----ET----TEEEECSCCGGGCEEEEE
T ss_pred             CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe-----ec----eEEEEecCCcccCEEEEE
Confidence            444444 56778899999999999997 57888999999988766433221     11    248999999999999999


Q ss_pred             EEeCCCCceeeeeeEEE
Q psy14540         80 TATNRVGSQTHSADMRV   96 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v   96 (291)
                      .+.|..|.....+.|.|
T Consensus        72 ~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          72 TGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             EEECSSCEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999998888877776

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=2.5e-16  Score=96.95  Aligned_cols=90  Identities=17%  Similarity=0.321  Sum_probs=69.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      ++.|...|.++.+.+|+.+.|.|.+.+.|.+.+.|++++..+... ....   . ....  .+|.|.+++..|+|.|+|.
T Consensus         1 k~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~---~-~~~~--~~L~I~~~~~~D~G~Y~C~   74 (92)
T d1epfa2           1 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRF---I-VLSN--NYLQIRGIKKTDEGTYRCE   74 (92)
T ss_dssp             CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTE---E-ECTT--SCEEETTCCGGGCEEEEEE
T ss_pred             CcEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceee---e-eeee--eeEEECCCCHHhCEEEEEE
Confidence            367888899999999999999999999999999999999887622 1111   1 1111  2499999999999999999


Q ss_pred             EeCCCCceeeeeeEEEE
Q psy14540         81 ATNRVGSQTHSADMRVY   97 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~   97 (291)
                      +.+..+.......+.|.
T Consensus        75 a~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          75 GRILARGEINFKDIQVI   91 (92)
T ss_dssp             EEEGGGTEEEEEEEEEE
T ss_pred             EEECcCCEEEEEEEEEE
Confidence            99876666555555553

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.2e-15  Score=91.58  Aligned_cols=86  Identities=22%  Similarity=0.336  Sum_probs=68.3

Q ss_pred             ceeecce-eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          5 LIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         5 ~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      |...|.. ..+.+|+++.|.|.+.+.|.+.+.|++++..+......       .....+.|.|.+++.+|+|.|+|.+.|
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~-------~~~~~~~L~I~~v~~~d~G~Y~C~a~N   75 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVT-------NEGTTSTLTMNPVSFGNEHSYLCTATC   75 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEE-------EETTEEEEEESSCCGGGCSEEEEEEEE
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeee-------eecCCcEEEEecccccccceEEEEEEe
Confidence            4455644 45678999999999999999999999987655433221       122346799999999999999999999


Q ss_pred             CCCceeeeeeEEEE
Q psy14540         84 RVGSQTHSADMRVY   97 (291)
Q Consensus        84 ~~~~~~~~~~l~v~   97 (291)
                      ..|..+..+.|.|.
T Consensus        76 ~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          76 ESRKLEKGIQVEIY   89 (90)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99998888888875

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.9e-16  Score=93.48  Aligned_cols=76  Identities=16%  Similarity=0.242  Sum_probs=63.7

Q ss_pred             eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceee
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTH   90 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~   90 (291)
                      +..|.+|++++|.|.+.+.|.|.+.|++++..+...              ...|.|.+++.+|+|.|+|.+.|..|....
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~--------------~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~   73 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG--------------GKTLSVSQLELQDSGTWTCTVLQNQKKVEF   73 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE--------------SSEEEESSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceee--------------eeeeeeeecccccccEEEEEEEeCCCEEEE
Confidence            457899999999999999999999999976543210              124789999999999999999999999999


Q ss_pred             eeeEEEEcCC
Q psy14540         91 SADMRVYDAP  100 (291)
Q Consensus        91 ~~~l~v~~~~  100 (291)
                      .+.+.|+..+
T Consensus        74 ~~~v~V~~~~   83 (84)
T d2nxyb2          74 KIDIVVLAFQ   83 (84)
T ss_dssp             EEEECEECCC
T ss_pred             EEEEEEEecC
Confidence            9988887654

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=6.6e-15  Score=91.60  Aligned_cols=90  Identities=24%  Similarity=0.452  Sum_probs=68.0

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCC-CCeeEEEE-CCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKL-DGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ++.+.|....+.+|+++.|.|.+.+.| .+.+.|++ ++..+..  .++...    ......++|.|.+++.+|+|.|+|
T Consensus         2 ~V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~----~~~~~~~~L~I~~~~~~D~G~Y~C   77 (97)
T d1epfa1           2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV----WNDDDSSTLTIYNANIDDAGIYKC   77 (97)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEE----EEETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEE----eecCcceEEEcccCchhhceEEEE
Confidence            356788889999999999999999876 47899999 5554442  222221    223345789999999999999999


Q ss_pred             EEeCCCCce-eeeeeEEEE
Q psy14540         80 TATNRVGSQ-THSADMRVY   97 (291)
Q Consensus        80 ~~~~~~~~~-~~~~~l~v~   97 (291)
                      .+.|..|.. ...+.|.|.
T Consensus        78 ~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          78 VVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEEETTTEEEEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEEEEEE
Confidence            999988864 456677765

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.60  E-value=1.7e-15  Score=94.29  Aligned_cols=87  Identities=22%  Similarity=0.353  Sum_probs=59.8

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....++.+...+ ...                           
T Consensus         7 ~p~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~~~~l~~~~~~~~~~~~-~~~---------------------------   57 (97)
T d1koaa1           7 KPYGTEVGEGQSANFYCRV-IASSPPVVTWHKDDRELKQSVKYMKRYNG-NDY---------------------------   57 (97)
T ss_dssp             CCCCCEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCSBTTBBCCCST-TEE---------------------------
T ss_pred             eCCCEEEeCCCcEEEEEEE-EEcCCCEEEEEEeeeccceeeEEEEEecC-Cee---------------------------
Confidence            3455778899999999999 69999999999999998766554332221 122                           


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV  239 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~  239 (291)
                                  .|.|.++..+|+|.|+|.|.|..|..+..+.|.|..
T Consensus        58 ------------~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          58 ------------GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             ------------EEEESCCCSGGGSCEEEEEEETTEEEEEEECCEEEC
T ss_pred             ------------EEEeCCCceecCEEEEEEEEECCCEEEEEEEEEEee
Confidence                        355556666666666666666666655666666653

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.5e-15  Score=100.47  Aligned_cols=96  Identities=19%  Similarity=0.251  Sum_probs=72.6

Q ss_pred             CCccee-----ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeE-------------------------ec
Q psy14540          2 HPQLIY-----KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFV-------------------------MG   51 (291)
Q Consensus         2 ~p~~~~-----~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-------------------------~~   51 (291)
                      ||+|..     .|..++|.+|+.++|.|.+.|.|.+.+.|++++..+......                         ..
T Consensus         4 PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (130)
T d1gxea_           4 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEG   83 (130)
T ss_dssp             CCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSS
T ss_pred             CCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCc
Confidence            787743     456788999999999999999999999999977654311000                         00


Q ss_pred             eEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540         52 QYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        52 ~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~   97 (291)
                      ..........++|.|.+++.+|+|.|+|.+.|..|.....+.|.|.
T Consensus        84 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          84 RVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             eEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            0111122345789999999999999999999999999888888875

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.59  E-value=6.4e-16  Score=95.77  Aligned_cols=82  Identities=24%  Similarity=0.346  Sum_probs=65.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      .|.|...|.+..+.+|+.+.|.|.+.+.|.+ .+.|+++|..+.......   .....  ..+|.|.+++.+|+|.|+|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~---~~~~~--~~~L~i~~v~~~D~G~Y~C~   76 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNA---ALRKD--EGSLVFLRPQASDEGHYQCF   76 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTE---EECTT--SCCEEESSCCGGGCEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeeccee---eeccc--ceEEEEeccChhcCeEEEEE
Confidence            5899999999999999999999999987755 699999999886322111   01111  24599999999999999999


Q ss_pred             EeCCCCce
Q psy14540         81 ATNRVGSQ   88 (291)
Q Consensus        81 ~~~~~~~~   88 (291)
                      +.|..|..
T Consensus        77 a~N~~G~~   84 (94)
T d1biha1          77 AETPAGVA   84 (94)
T ss_dssp             EEETTEEE
T ss_pred             EEeCCCEE
Confidence            99988864

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.3e-16  Score=94.69  Aligned_cols=80  Identities=24%  Similarity=0.225  Sum_probs=65.6

Q ss_pred             CCccee--ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIY--KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~--~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +|.|..  .|...++.+|+.+.|.|.+.|.|.+.+.|+|++..+...                 +.+.+++..|+|.|+|
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~-----------------~~~~~v~~~d~G~Y~C   64 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI-----------------GESVTVTRDLEGTYLC   64 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT-----------------TSCEECCGGGCEEEEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee-----------------eeeeccccCCCCEEEE
Confidence            466643  356789999999999999999999999999998765521                 1245688999999999


Q ss_pred             EEeCCCCceeeeeeEEEEc
Q psy14540         80 TATNRVGSQTHSADMRVYD   98 (291)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~   98 (291)
                      .+.|..|..+..+.|.|..
T Consensus        65 ~A~N~~G~~~~~~~l~V~~   83 (84)
T d2oz4a3          65 RARSTQGEVTREVTVNVLS   83 (84)
T ss_dssp             EEEETTEEEEEEEEEEEEC
T ss_pred             EEEcCCCEEEEEEEEEEEC
Confidence            9999999888888888864

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.58  E-value=2.6e-15  Score=92.63  Aligned_cols=78  Identities=23%  Similarity=0.351  Sum_probs=53.2

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      .....+.+.+|+.+.|.|.+ .|.|.|.+.|++++..+....+....... ....|.|.++..+|.|.|+|.|.|..|..
T Consensus         7 ~~~~~~~v~~G~~~~l~c~~-~g~P~p~v~W~~~~~~i~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   84 (93)
T d1wiua_           7 TASRKIKIKAGFTHNLEVDF-IGAPDPTATWTVGDSGAALAPELLVDAKS-STTSIFFPSAKRADSGNYKLKVKNELGED   84 (93)
T ss_dssp             CCCCEEEECSSBCCEEEEEE-ECCSSCEEEEECSSSSCBCSTTSEEEEET-TEEEEECTTBCGGGCEEEEEEEEETTEEE
T ss_pred             eCCCcEEEeCCCeEEEEEEE-EEecCCeEEEEeeeeeceeeeeeeecccc-cceeeccccccccccEEEEEEEEECCCEE
Confidence            34566889999999999999 69999999999999988776655443322 23345555555555555555555544433

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.57  E-value=6e-15  Score=90.00  Aligned_cols=68  Identities=29%  Similarity=0.563  Sum_probs=44.6

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ....+.+|+.+.|.|.+ .|.|.|.+.|++++.++... +....     ...|.|.++...|.|.|+|.|.|..|
T Consensus        11 ~~~~v~~G~~~~l~C~~-~g~P~p~v~W~~~~~~i~~~-~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~N~~G   78 (89)
T d1biha4          11 KVIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLSGG-RATVT-----DSGLVIKGVKNGDKGYYGCRATNEHG   78 (89)
T ss_dssp             SEEEECTTSCEEEECEE-EEESCCCCEEEETTEECCSS-SEEEE-----TTEEEESSCCSTTCEEEEEEEEETTE
T ss_pred             CCEEEeCCCeEEEEEEE-EEeCCCEEEEEeCCccCccc-cEEEe-----eeeEEECCCChhhCEEEEEEEEECCC
Confidence            34678899999999999 69999999999999988543 22222     11244444444444444444444444

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.7e-14  Score=88.91  Aligned_cols=86  Identities=15%  Similarity=0.293  Sum_probs=65.1

Q ss_pred             CCcceeecce-eeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-C-eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-D-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +|.|+....+ ..|.+|+++.|.|.+. .|.+.+.|+++|..+.. . .+.+     ......+.|.|.+++..|+|.|+
T Consensus         5 ~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~   78 (94)
T d1pd6a_           5 STAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIF-----ESIGAKRTLTISQCSLADDAAYQ   78 (94)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEE-----EEETTEEEEEECSCSSSSCEEEE
T ss_pred             CCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEee-----eccCCeEEeecCCCCceecEEEE
Confidence            6778777654 5799999999999985 58889999999998863 2 2222     22345678999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEE
Q psy14540         79 CTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~   97 (291)
                      |.+.+    ...+..|.|.
T Consensus        79 c~a~n----~~~s~~l~V~   93 (94)
T d1pd6a_          79 CVVGG----EKCSTELFVK   93 (94)
T ss_dssp             EEETT----EEECCEEEEE
T ss_pred             EEEee----EEEEEEEEEE
Confidence            99864    3445556654

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=3.9e-15  Score=95.15  Aligned_cols=97  Identities=22%  Similarity=0.290  Sum_probs=66.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCC-eeEece---EEeeccceEEEEEEeecCCCCCeE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGD-RFVMGQ---YMSLHGDVISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~-~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~   76 (291)
                      ||.+-.-..+..+.+|+++.|.|.+. +.|.+.++|++++..+... ......   .........+.|.|.+++.+|+|.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   81 (110)
T d1f97a2           2 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE   81 (110)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEE
T ss_pred             CCccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEE
Confidence            55554444456789999999999986 6889999999999877522 111100   000111223568999999999999


Q ss_pred             EEEEEeCCCCceee--eeeEEEEc
Q psy14540         77 YQCTATNRVGSQTH--SADMRVYD   98 (291)
Q Consensus        77 y~C~~~~~~~~~~~--~~~l~v~~   98 (291)
                      |+|.+.|..|....  .+.+.|.+
T Consensus        82 Y~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          82 YYCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             EEEEEECSSSCCEECCCEEEEEES
T ss_pred             EEEEEEECCCcEEEEEEEEEEEEe
Confidence            99999998887644  45566654

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=6.1e-15  Score=91.56  Aligned_cols=89  Identities=25%  Similarity=0.471  Sum_probs=67.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|.  +.+..+.+|++++|.|.+.+ +.+.+.|++++..+.. .+...     ...  ..+|.|.+++.+|+|.|+|.
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~-----~~~--~~~L~I~~v~~~d~G~Y~C~   74 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTL-----SQN--NSILRIDPIKREDAGEYQCE   74 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEE-----ETT--TTEEEECSCCGGGCEEEEEE
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceec-----cCC--ceEEEEeccchhhceEEEEE
Confidence            55543  56678999999999998765 5678999999998873 33222     111  23599999999999999999


Q ss_pred             EeCCCCce-eeeeeEEEEcCC
Q psy14540         81 ATNRVGSQ-THSADMRVYDAP  100 (291)
Q Consensus        81 ~~~~~~~~-~~~~~l~v~~~~  100 (291)
                      +.|..+.. +..+.|.|...|
T Consensus        75 a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          75 ISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             EESSSCCEECCCCEEEECCSC
T ss_pred             EEeCCCCeEEEeEEEEEEcCC
Confidence            99988765 456788887654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.56  E-value=4.2e-15  Score=90.32  Aligned_cols=81  Identities=17%  Similarity=0.269  Sum_probs=61.5

Q ss_pred             eeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      ++.+....+.+|++++|.|.+.+ .|.+.+.|+|++..+....            ....|.|.+++.+|+|.|+|.+.+.
T Consensus         4 ilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~------------~~~~l~i~~v~~~dsG~Y~C~a~n~   71 (88)
T d2fcba2           4 VLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR------------SDPNFSIPQANHSHSGDYHCTGNIG   71 (88)
T ss_dssp             EEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES------------SCCEEEETTCCGGGCEEEEEEEEET
T ss_pred             EEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc------------cccccccCccCHHHCCeEEEEEEeC
Confidence            45555667999999999999975 5677899999998754110            1134889999999999999999987


Q ss_pred             CCce-eeeeeEEEEc
Q psy14540         85 VGSQ-THSADMRVYD   98 (291)
Q Consensus        85 ~~~~-~~~~~l~v~~   98 (291)
                      .+.. +..+.|.|..
T Consensus        72 ~g~~~S~~v~l~V~~   86 (88)
T d2fcba2          72 YTLYSSKPVTITVQA   86 (88)
T ss_dssp             TEEEECCCEEEEECC
T ss_pred             CCCEEeeeEEEEEeC
Confidence            7653 4556677754

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.2e-14  Score=86.92  Aligned_cols=85  Identities=16%  Similarity=0.187  Sum_probs=64.5

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      |+.++.+..+.+|+++.|.|.+. .|.+.+.|++++..+.. .....   ........++|.|.+++.+|+|.|+|.+.+
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~---~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRY---RIRVEGKKHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSE---EEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccE---EEEEeCCccEEEECccccccCEEEEEEEec
Confidence            56677889999999999999985 67889999999998762 22111   112234467899999999999999999865


Q ss_pred             CCCceeeeeeEEEE
Q psy14540         84 RVGSQTHSADMRVY   97 (291)
Q Consensus        84 ~~~~~~~~~~l~v~   97 (291)
                          ...+..|.|.
T Consensus        79 ----~~~~a~l~V~   88 (90)
T d1x44a1          79 ----GQSSAKLSVD   88 (90)
T ss_dssp             ----EEEEEEEEEE
T ss_pred             ----ceEEEEEEEE
Confidence                4455666665

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.9e-14  Score=88.38  Aligned_cols=75  Identities=21%  Similarity=0.424  Sum_probs=48.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC-CceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG-EYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      |..+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+..+.... .....|.|.++..+|.|.|+|.|.|..|
T Consensus         3 P~~~~v~~G~~~~l~C~v-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   78 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGE   78 (91)
T ss_dssp             CEEEEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTT
T ss_pred             CeeEEEcCCCeEEEEEEE-EecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCC
Confidence            355788899999999999 69999999999999998766543333221 1223344444444444444444444443

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1e-14  Score=88.77  Aligned_cols=84  Identities=24%  Similarity=0.332  Sum_probs=64.2

Q ss_pred             ceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      +++.+....|.+|++++|.|.+.+ .+...+.|||||..+.....            ...|.|.+++.+|+|.|+|.+.+
T Consensus         3 Lilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~------------~~~l~i~~~~~~dsG~Y~C~a~n   70 (89)
T d1f2qa2           3 LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE------------NHNISITNATVEDSGTYYCTGKV   70 (89)
T ss_dssp             EEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC------------SSEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc------------cceEEEeeeeeecCcEEEEEEEe
Confidence            345566678999999999999976 45668999999987763210            12478999999999999999998


Q ss_pred             CCCc-eeeeeeEEEEcCC
Q psy14540         84 RVGS-QTHSADMRVYDAP  100 (291)
Q Consensus        84 ~~~~-~~~~~~l~v~~~~  100 (291)
                      ..+. .+..+.++|...|
T Consensus        71 ~~~~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          71 WQLDYESEPLNITVIKAP   88 (89)
T ss_dssp             TTEEEECCCEEEEEECSC
T ss_pred             CCCCeEeeeEEEEEEeCC
Confidence            6654 3566778887654

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.55  E-value=6.8e-16  Score=96.07  Aligned_cols=37  Identities=27%  Similarity=0.512  Sum_probs=31.9

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA  152 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~  152 (291)
                      ...+.+|+.+.|.|.+ .|.|.|.+.|++||.++....
T Consensus        14 ~~~v~~G~~v~l~C~~-~g~P~p~i~W~kng~~l~~~~   50 (97)
T d3dara1          14 LHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEH   50 (97)
T ss_dssp             EEEECTTCCEEEECCE-EEESCCEEEEEETTEECCGGG
T ss_pred             cEEECCCCcEEEEEEE-eEECCCEEEEEECCEeccccC
Confidence            3567899999999999 689999999999999986544

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.55  E-value=1e-14  Score=88.76  Aligned_cols=82  Identities=15%  Similarity=0.263  Sum_probs=61.4

Q ss_pred             ceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      +++.+....|.+|++++|.|.+.+ .|.+.+.|+|||..+....            ....|.|.+++.+|+|.|+|.+.+
T Consensus         5 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~------------~~~~l~I~~v~~~dsG~Y~C~a~n   72 (89)
T d1fnla2           5 LLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH------------HNSDFHIPKATLKDSGSYFCRGLV   72 (89)
T ss_dssp             EEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE------------ECCCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec------------cccccEECccceeccceEEEEEEe
Confidence            445566677999999999999875 5667899999998654110            113478999999999999999998


Q ss_pred             CCCce-eeeeeEEEEc
Q psy14540         84 RVGSQ-THSADMRVYD   98 (291)
Q Consensus        84 ~~~~~-~~~~~l~v~~   98 (291)
                      ..+.. +..+.|+|.+
T Consensus        73 ~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          73 GSKNVSSETVNITITQ   88 (89)
T ss_dssp             TTEEEECCCEEEEEEC
T ss_pred             CCCCeEEeeEEEEEEe
Confidence            76643 4556666653

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.5e-14  Score=88.48  Aligned_cols=81  Identities=25%  Similarity=0.467  Sum_probs=55.4

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+....+.+|+.+.|.|.+..+.|.+.+.|++++..+.......                                    
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~------------------------------------   51 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD------------------------------------   51 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE------------------------------------
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe------------------------------------
Confidence            34567889999999999996678899999999887664332111                                    


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                               ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus        52 ---------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          52 ---------FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             ---------ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ---------eceEEEEecCCcccCEEEEEEEEECCCEEEEEEEEEE
Confidence                     0234666666666666666666666666555555554

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=7.2e-16  Score=97.58  Aligned_cols=92  Identities=20%  Similarity=0.327  Sum_probs=66.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCC-CeeEec--eEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAG-DRFVMG--QYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~-~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      ||.+.....+..+.+|+.++|.|.+. +.|.+.+.|++++..+.. ......  ..........+.|.|.+++..|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            67666556667899999999999985 688999999999988762 111111  00011112235689999999999999


Q ss_pred             EEEEeCCCCceeeeee
Q psy14540         78 QCTATNRVGSQTHSAD   93 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~   93 (291)
                      +|.+.|..|....+..
T Consensus        82 ~C~a~N~~G~~~~s~~   97 (104)
T d1nbqa2          82 SCEARNGYGTPMTSNA   97 (104)
T ss_dssp             EEEEECSSSCCEECCC
T ss_pred             EEEEEECCCceEEEEE
Confidence            9999999987655443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=4.9e-15  Score=93.24  Aligned_cols=96  Identities=17%  Similarity=0.244  Sum_probs=67.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEee-c---cceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSL-H---GDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~---~~~~~~l~i~~~~~~d~G~y   77 (291)
                      .|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++................ .   ....++|.|.+++.+|+|.|
T Consensus         1 k~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y   80 (102)
T d1f97a1           1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY   80 (102)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             CCCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEE
Confidence            3667777888899999999999999999999999998544322110000000000 0   00114699999999999999


Q ss_pred             EEEEeCCCCceeeeeeEEEE
Q psy14540         78 QCTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v~   97 (291)
                      +|.+.+..|.....+.++|.
T Consensus        81 ~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          81 TCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEECCCCEEEEEEEEEE
Confidence            99999998887776666554

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=5.2e-14  Score=89.25  Aligned_cols=94  Identities=21%  Similarity=0.361  Sum_probs=69.5

Q ss_pred             CCcceeecce-eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEee-------ccceEEEEEEeecCCC
Q psy14540          2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSL-------HGDVISHVNISSVRVE   72 (291)
Q Consensus         2 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~l~i~~~~~~   72 (291)
                      .|.|+..+.. ..+..|+++.|.|.+.+.|.+.+.|+++|..+... ..........       .....+.|.|.+++..
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            4777665533 56788999999999999999999999999987622 1111111000       1123478999999999


Q ss_pred             CCe-EEEEEEeCCCCceeeeeeEE
Q psy14540         73 DSG-IYQCTATNRVGSQTHSADMR   95 (291)
Q Consensus        73 d~G-~y~C~~~~~~~~~~~~~~l~   95 (291)
                      |.| .|+|.+.|..|.....+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999888777664

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.5e-15  Score=88.51  Aligned_cols=74  Identities=12%  Similarity=0.124  Sum_probs=51.6

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ..+.+|+.++|.|.+ .|.|.|.+.|++++..+...                                            
T Consensus         9 ~~v~~G~~~~L~C~~-~g~p~P~i~W~~~~~~~~~~--------------------------------------------   43 (84)
T d2nxyb2           9 THLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQG--------------------------------------------   43 (84)
T ss_dssp             SCEETTCCEEEEEEC-CTTCCCEEEEECTTCCEEEE--------------------------------------------
T ss_pred             eEEECCCeEEEEEEe-EcCCchheEEEeecccceee--------------------------------------------
Confidence            567899999999999 79999999999876543211                                            


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP  240 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~  240 (291)
                            ...|.|.++..+|+|.|+|.|.|..|.....+.|.|...
T Consensus        44 ------~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~V~~~   82 (84)
T d2nxyb2          44 ------GKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF   82 (84)
T ss_dssp             ------SSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECEECC
T ss_pred             ------eeeeeeeecccccccEEEEEEEeCCCEEEEEEEEEEEec
Confidence                  223555666666666666666666666666666655543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.7e-14  Score=91.15  Aligned_cols=92  Identities=16%  Similarity=0.198  Sum_probs=68.1

Q ss_pred             cceeeeecCCcEEEE---EEecCCCCCeeEEEECCeecCC-CeeEeceEEe--eccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          9 FIQQTLQPGPPVSLK---CIATGNPTPHISWKLDGYPLAG-DRFVMGQYMS--LHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~---C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      |..+.+.+|..+.+.   |.+.|.|.+.+.|+++|+.+.. ..........  ......+.|.|.++...|+|.|+|.+.
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            344556666666654   5888999999999999999873 3222211111  122245779999999999999999999


Q ss_pred             CCCCceeeeeeEEEEcCC
Q psy14540         83 NRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~  100 (291)
                      |..|.....+.+.|..+|
T Consensus        84 N~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          84 NPFGQASASIMAAFMDNP  101 (107)
T ss_dssp             ETTEEEEEEEEECCCSCT
T ss_pred             eCCCEEEEEEEEEEEcCC
Confidence            999999999988888766

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.53  E-value=1.7e-15  Score=94.30  Aligned_cols=87  Identities=29%  Similarity=0.453  Sum_probs=66.7

Q ss_pred             CCcceeecceeeeecC---CcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPG---PPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.|+..|.+..+.+|   ++++|.|.+.+.|.+.+.|+++|..+... ....   . ....  ..|.|..++..|+|.|
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~---~-~~~~--~~l~i~~~~~~d~G~Y   77 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY---R-LVAG--DLVISNPVKAKDAGSY   77 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSE---E-EETT--EEEEESCCHHHHCEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceE---E-eeee--eEEEEecccccCCEEE
Confidence            6899999999888776   78999999999999999999999988622 1111   1 1111  4578888999999999


Q ss_pred             EEEEeCCCCce-eeeeeE
Q psy14540         78 QCTATNRVGSQ-THSADM   94 (291)
Q Consensus        78 ~C~~~~~~~~~-~~~~~l   94 (291)
                      +|.+.|..|.. +..+.|
T Consensus        78 ~C~a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          78 QCVATNARGTVVSREASL   95 (97)
T ss_dssp             EEEEEETTEEEECCCEEE
T ss_pred             EEEEEECCCEEEEEEEEE
Confidence            99999998864 334444

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=5.8e-14  Score=87.02  Aligned_cols=84  Identities=25%  Similarity=0.411  Sum_probs=62.4

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      ....+.+|+.++|.|.+ .+ +.+.+.|++++..+....+.....                                   
T Consensus        11 ~~~~v~~g~~v~l~C~~-~~-~~~~v~W~~~~~~l~~~~~~~~~~-----------------------------------   53 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLS-ND-IGANIQWLFNSQSLQLTERMTLSQ-----------------------------------   53 (96)
T ss_dssp             SCSEECTTSCEEEEECC-CC-SSCEEEEEETTEECCCCTTEEEET-----------------------------------
T ss_pred             CceEEeCCCeEEEEEcc-CC-CCCCEEEEEeeeecccccceeccC-----------------------------------
Confidence            34568899999999997 45 557999999999887665543321                                   


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEecCC
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNVPP  241 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~~p  241 (291)
                             ...+|.|.++..+|.|.|+|.|.|..+.. +..+.|.|.++|
T Consensus        54 -------~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          54 -------NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             -------TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred             -------CceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence                   13457777777888888888888877654 567888888776

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.5e-14  Score=88.61  Aligned_cols=77  Identities=23%  Similarity=0.318  Sum_probs=60.9

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .+|.|...+...++.+|++++|.|.+.+.+ .+.|+|+|++..+........    ..+   .+|.|.+++.+|+|.|+|
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~----~~~---~~L~I~~v~~~D~G~Y~C   77 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA----GMG---RRLLLRSVQLHDSGNYSC   77 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEE----EES---SEEEECSCCGGGCEEEEE
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEe----cCC---CEEEECCCChhcCEEEEE
Confidence            368999999999999999999999998755 468999999988874322111    111   259999999999999999


Q ss_pred             EEeCC
Q psy14540         80 TATNR   84 (291)
Q Consensus        80 ~~~~~   84 (291)
                      .+.+.
T Consensus        78 ~a~n~   82 (93)
T d1n26a1          78 YRAGR   82 (93)
T ss_dssp             ESSSS
T ss_pred             EECCc
Confidence            98753

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.52  E-value=2.2e-14  Score=87.10  Aligned_cols=77  Identities=19%  Similarity=0.426  Sum_probs=53.2

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ..+.+|+.++|.|.+..+.|.+.+.|||+|..+....                                           
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~-------------------------------------------   46 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR-------------------------------------------   46 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES-------------------------------------------
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc-------------------------------------------
Confidence            4577999999999985567788999999997753211                                           


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecC
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVP  240 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~  240 (291)
                           ....|.|..+..+|+|.|+|.|.|..+. .+..+.|.|..|
T Consensus        47 -----~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          47 -----SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             -----SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             -----cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence                 0234556666667777777777776654 355666766554

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=1.5e-14  Score=88.70  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      .+....+.+|+.++|.|.+ .|.|.|.+.|++++..
T Consensus        11 ~p~~~~~~~G~~v~l~C~~-~g~P~p~i~W~k~~~~   45 (91)
T d1cs6a3          11 FPADTYALTGQMVTLECFA-FGNPVPQIKWRKLDGS   45 (91)
T ss_dssp             CCSEEEEETTCCEEEECEE-EEESCCEEEEEECCSC
T ss_pred             CCCcEEEecCCcEEEEEEE-EEccCCEEEEEecccc
Confidence            3456788899999999999 6899999999997644

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.4e-14  Score=86.85  Aligned_cols=92  Identities=16%  Similarity=0.251  Sum_probs=64.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE-CCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|. .+.+..|.+|+++.|.|.+.+.|.+.+.|.+ +...........  ..........+|.|.++..+|+|.|+|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI--KVTSSRRFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEE--EEEETTEEEEEEEECSCCGGGCSEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCce--eEEEeecCceEEEECCCCHHHCeEEEEE
Confidence            68887 5899999999999999999998877655443 222222111111  1122333456799999999999999999


Q ss_pred             EeCCCCcee-eeeeEEE
Q psy14540         81 ATNRVGSQT-HSADMRV   96 (291)
Q Consensus        81 ~~~~~~~~~-~~~~l~v   96 (291)
                      +.|..|... ....|.|
T Consensus        79 a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          79 IRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEEEE
Confidence            999988754 4456665

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.3e-14  Score=85.81  Aligned_cols=80  Identities=21%  Similarity=0.358  Sum_probs=61.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|...|....+.+|++++|.|.+.+.+.+ .+.|++++..+....              ..|.|.+++.+|+|.|+|.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~i~~v~~~d~G~Y~C~   66 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN--------------SSLNIVNAKFEDSGEYKCQ   66 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS--------------SEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc--------------ceeEECCCChhhCCcEEEE
Confidence            5899999998999999999999999987765 477888988766221              2388999999999999999


Q ss_pred             EeCCCCceeeeeeEEEE
Q psy14540         81 ATNRVGSQTHSADMRVY   97 (291)
Q Consensus        81 ~~~~~~~~~~~~~l~v~   97 (291)
                      +.+..  .+..+.|.|.
T Consensus        67 a~~s~--~S~~v~l~V~   81 (82)
T d1f2qa1          67 HQQVN--ESEPVYLEVF   81 (82)
T ss_dssp             CTTSS--CCCCEEEEEE
T ss_pred             ecCCC--CcccEEEEEE
Confidence            87643  3445556553

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.7e-15  Score=93.95  Aligned_cols=95  Identities=18%  Similarity=0.323  Sum_probs=66.4

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEee-ccc---eEEEEEEeecCCCCCeEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSL-HGD---VISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~---~~~~l~i~~~~~~d~G~y~   78 (291)
                      +.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..+............. ...   ..++|.|.+++.+|+|.|+
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence            345556677889999999999999999999999999765433111100000000 000   1146999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEE
Q psy14540         79 CTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~   97 (291)
                      |.+.|..|.....+.++|.
T Consensus        85 C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          85 CMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEEETTSSCEECCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            9999999887777666553

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=2.6e-14  Score=89.42  Aligned_cols=84  Identities=26%  Similarity=0.472  Sum_probs=57.4

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ..+..|+.+.|.|.+ .|.|.|.+.|+++|..+..........                                     
T Consensus        15 ~t~~~G~~v~l~C~~-~g~P~p~i~W~~~g~~i~~~~~~~~~~-------------------------------------   56 (100)
T d1qz1a3          15 ATANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIENEEEDDEKH-------------------------------------   56 (100)
T ss_dssp             EETTSCCCEEEEEEE-EEESCCEEEEEETTEECCCC--CCSSE-------------------------------------
T ss_pred             EEEcCCCCEEEEEEE-EEecCCEEEEEeCCcccccccccceeE-------------------------------------
Confidence            456789999999999 699999999999999875432211000                                     


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                       ........|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus        57 -~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   98 (100)
T d1qz1a3          57 -IFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF   98 (100)
T ss_dssp             -EECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             -EeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEEEEE
Confidence             001113456777777777777777777777777666666664

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.50  E-value=4.6e-14  Score=84.86  Aligned_cols=70  Identities=20%  Similarity=0.327  Sum_probs=56.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCe-eEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT   80 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~   80 (291)
                      +|.|.+.|...++.+|++++|.|.+.+.+.+. +.|++++..+....              .+|.|.+++.+|+|.|+|.
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~--------------~~l~i~~~~~~d~G~Y~C~   70 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA--------------SSYFIDAATVNDSGEYRCQ   70 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC--------------SEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc--------------eeeEecCCcccCCEEEEEE
Confidence            67888999889999999999999998866654 67788887654211              2488999999999999999


Q ss_pred             EeCCC
Q psy14540         81 ATNRV   85 (291)
Q Consensus        81 ~~~~~   85 (291)
                      +.+..
T Consensus        71 a~~s~   75 (84)
T d1fnla1          71 TNLST   75 (84)
T ss_dssp             CSSSC
T ss_pred             ccCCC
Confidence            87543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.50  E-value=6.2e-14  Score=84.54  Aligned_cols=79  Identities=19%  Similarity=0.283  Sum_probs=61.1

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      |.|.+.|....+.+|++++|.|.+.+.+.+ .+.|++||..+....              ..|.|.+++.+|+|.|+|.+
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~--------------~~l~i~~v~~~dsG~Y~C~a   70 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT--------------QPSYRFKANNNDSGEYTCQT   70 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC--------------SSEEEEECCGGGCEEEEEEC
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc--------------cceEEeeccccCCcEEEEEC
Confidence            467788888899999999999999886654 589999998876321              23779999999999999998


Q ss_pred             eCCCCceeeeeeEEEE
Q psy14540         82 TNRVGSQTHSADMRVY   97 (291)
Q Consensus        82 ~~~~~~~~~~~~l~v~   97 (291)
                      .+..  .+..+.|.|.
T Consensus        71 ~ns~--~S~~v~l~V~   84 (85)
T d2fcba1          71 GQTS--LSDPVHLTVL   84 (85)
T ss_dssp             TTSB--CCCCEEEEEE
T ss_pred             CCCc--ccccEEEEEE
Confidence            7643  3444555553

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.5e-14  Score=95.52  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=76.3

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      ..+..+.+.+|+.++|.|.+ .|.|.+.+.|++++..+...............    ........       ........
T Consensus        14 ~~~~~v~v~~G~~v~L~C~v-~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-------~~~~~~~~   81 (130)
T d1gxea_          14 RIPDTIVVVAGNKLRLDVPI-SGDPAPTVIWQKAITQGNKAPARPAPDAPEDT----GDSDEWVF-------DKKLLCET   81 (130)
T ss_dssp             CCCCEEEESSSSCCCCEEEC-CSBSCCEEEEEEECCCSCSSCCCCCCCCCCCC----CCSSCCCC-------SCCCCCSC
T ss_pred             CCCCCEEEEcCCeEEEEEEE-EEecCCeEEEeeCCeEccCCccceeeeccccc----ccceeeec-------CCceeecc
Confidence            34556889999999999999 79999999999988776554322111110000    00000000       00001112


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                      .....+........|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          82 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             CceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            223444555667889999999999999999999999998888888875

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-13  Score=86.58  Aligned_cols=89  Identities=10%  Similarity=0.113  Sum_probs=70.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      ||.+.+.+.+..+.+|+.++|.|.+.+ .|.+  .+.|++++..+....       .......+.|.|..+..+|.|.|+
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~-------~~~~~~~s~l~i~~~~~dd~g~yt   76 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP-------AVGEPAEVTTTVLVRRDHHGAQFS   76 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE-------CCTTTEEEEEEEECCSSCSSCEEE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccc-------cccccceEEEEEeeehhHCCCEEE
Confidence            678888888889999999999999987 5544  588999998775221       123345678999999999999999


Q ss_pred             EEEeCCCCceeeeeeEEEE
Q psy14540         79 CTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        79 C~~~~~~~~~~~~~~l~v~   97 (291)
                      |++.|..+.......+.+.
T Consensus        77 C~A~n~~g~~~~~~~~~~s   95 (103)
T d1iama1          77 CRTELDLRPQGLELFENTS   95 (103)
T ss_dssp             EEEEEECGGGTSCEEEEEC
T ss_pred             EEEEeCCCCccCeEeeeEc
Confidence            9999988876666666654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.4e-14  Score=85.19  Aligned_cols=79  Identities=19%  Similarity=0.239  Sum_probs=57.4

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      ..+.+|+.++|.|.+..+.|...+.||+||..+.....                                          
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~------------------------------------------   47 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE------------------------------------------   47 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC------------------------------------------
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc------------------------------------------
Confidence            45779999999999865567779999999987743211                                          


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCC
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPH  242 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~  242 (291)
                            ...|.|.++..+|+|.|.|.|.|..+. .+..+.|.|..+|.
T Consensus        48 ------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~Pr   89 (89)
T d1f2qa2          48 ------NHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR   89 (89)
T ss_dssp             ------SSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             ------cceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCCC
Confidence                  234566677777777777777776643 46777888887763

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.49  E-value=5.9e-14  Score=87.09  Aligned_cols=74  Identities=23%  Similarity=0.355  Sum_probs=47.6

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec-cCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS-SGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+.......... .......|.|..+..+|.|.|+|.|.|..|
T Consensus        11 ~~~~~~~G~~v~l~C~~-~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   85 (97)
T d1biha3          11 KDMMAKAGDVTMIYCMY-GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVG   85 (97)
T ss_dssp             CSEEEETTSCEEEEEEE-ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSS
T ss_pred             CCEEEecCCeEEEEEEE-EEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCC
Confidence            45788899999999999 689999999999999986554332221 111223444444444444444444444444

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.49  E-value=7e-15  Score=89.58  Aligned_cols=84  Identities=17%  Similarity=0.272  Sum_probs=65.4

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      .|..++.+..+.+|+++.|.|.+. .|.+.+.|++||..+. +.++.+     ......++|.|.+++.+|+|.|+|.+.
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~i~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~c~a~   76 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEI-----IEDGKKHILILHNCQLGMTGEVSFQAA   76 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBCS-SSSCCCBCCSSSCCCCSSSSCEE-----EECSSCEEEECCSCCSCCCSEECCBCS
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEEC-CCCcEEEEEEeeeecccceeEEE-----EeeceeEEEEEcCCChhcCEEEEEEEC
Confidence            356778889999999999999974 6888999999999887 444433     223455789999999999999999986


Q ss_pred             CCCCceeeeeeEEEE
Q psy14540         83 NRVGSQTHSADMRVY   97 (291)
Q Consensus        83 ~~~~~~~~~~~l~v~   97 (291)
                      +.    ..+..|.|.
T Consensus        77 n~----~~sa~l~V~   87 (89)
T d1tiua_          77 NA----KSAANLKVK   87 (89)
T ss_dssp             SC----BCCEEEEEE
T ss_pred             ce----EEEEEEEEE
Confidence            53    334556664

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=4e-14  Score=86.87  Aligned_cols=76  Identities=18%  Similarity=0.356  Sum_probs=54.3

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+.............  ..|.|.++...|+|.|+|.|.|..+.
T Consensus         6 ~~P~~~~v~~G~~~~l~C~v-~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~n~~~~   81 (92)
T d1epfa2           6 NAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRFIVLSN--NYLQIRGIKKTDEGTYRCEGRILARG   81 (92)
T ss_dssp             ECCSSEECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTEEECTT--SCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             EcCCCEEEeCCCcEEEEEEE-eecCCCeEEEEEcCcccccccceeeeeeee--eeEEECCCCHHhCEEEEEEEEECcCC
Confidence            34556789999999999999 689999999999999887665433322221  24677777777777776666665443

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.2e-13  Score=81.85  Aligned_cols=67  Identities=21%  Similarity=0.325  Sum_probs=46.4

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ..+....+.+|+.+.|.|.+ .|.|.| ++.|++||..+....          ...+.|.....+|.|.|+|.|.|..|
T Consensus         6 ~~P~~~~v~~G~~~~l~C~~-~g~P~P~~i~W~k~g~~i~~~~----------~~~~~l~~~~~~d~G~Y~C~A~N~~G   73 (85)
T d1rhfa2           6 VEPKDLAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGPA----------PSPSVLNVTGVTQSTMFSCEAHNLKG   73 (85)
T ss_dssp             ECCCCEEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCSE----------ESSEEEEECCCSSCEEEEEEEEETTE
T ss_pred             EeCCcEEEcCCCEEEEEEEE-ecCCcceEEEEEECCEECCCCC----------CcceEEecCCccccEEEEEEEEcCCC
Confidence            34456788899999999999 688887 899999999875432          11234444445555666666655555

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.1e-13  Score=84.60  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=28.8

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      ...+..|+.+.|.|.+ .|.|.|.+.|++++..+.
T Consensus        10 ~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~   43 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPL   43 (90)
T ss_dssp             EEEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCC
T ss_pred             cEEEECCCEEEEEEec-cCCCCceEEEEecCccce
Confidence            3566789999999999 699999999999876553

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1e-13  Score=84.37  Aligned_cols=35  Identities=14%  Similarity=0.313  Sum_probs=29.2

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI  148 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~  148 (291)
                      ....+.+|+++.|.|.+..+.|.+.|.|++.+.++
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~   45 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSL   45 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTT
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeee
Confidence            34678899999999998568899999999877654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.46  E-value=1.1e-13  Score=84.13  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=28.5

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      ..+.+|+.++|.|.+..+.|.+.+.||+||..+.
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~   45 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK   45 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEcccccc
Confidence            4578999999999985577788999999997753

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.7e-13  Score=84.41  Aligned_cols=95  Identities=21%  Similarity=0.289  Sum_probs=67.1

Q ss_pred             ceeecCCCceEEEE---EeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        115 SIKVHSGDRAGVQC---LVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       115 ~~~~~~g~~~~l~C---~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      .+.+..|....+.|   .+ .|.|.|.+.|+++|.++.........          +.... .+...             
T Consensus         6 ~~~~~~g~~~~~~ci~~~v-~G~P~P~v~W~~ng~~l~~~~~~~~~----------~~~~~-~~~~~-------------   60 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTE----------FLEPA-ANETV-------------   60 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEE----------EECCC-SSCCC-------------
T ss_pred             EeEECCCeEEEEEEEEEEE-EEecCCeEEEEEeeeEccCccceeee----------eeeee-eeeec-------------
Confidence            34555566666555   77 79999999999999998765443221          11110 01111             


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI  243 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~  243 (291)
                               ....|.|.++..+|+|.|+|.|.|..|...+++.|.|..+|..
T Consensus        61 ---------~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v~~~P~~  103 (107)
T d1he7a_          61 ---------RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFE  103 (107)
T ss_dssp             ---------EEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTTS
T ss_pred             ---------cceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEEEcCCCC
Confidence                     1346888999999999999999999999999999988888743

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.9e-14  Score=92.67  Aligned_cols=97  Identities=27%  Similarity=0.425  Sum_probs=73.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCC---eeEeceEEeeccceEEEEEEeecCCCC-CeE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGD---RFVMGQYMSLHGDVISHVNISSVRVED-SGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~   76 (291)
                      ||.| ..+..+.+.+|+.+.|.|.+.+ .+.+.+.|++++..+...   ++.... ........+.|.|.+++..| +|.
T Consensus         7 Pp~i-~~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~-~~~~~~~~s~L~I~~v~~~D~~G~   84 (115)
T d2crya1           7 PPII-SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET-ISTEEGVISTLTISNIVRADFQTI   84 (115)
T ss_dssp             SCCE-EEECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEE-EEETTEEEEEEECTTCCHHHHHSC
T ss_pred             CCEE-ecCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeee-eccccCcEEEEEEeccchhcCCeE
Confidence            5655 4567788999999999999988 456689999999887632   222211 11223345779999999999 699


Q ss_pred             EEEEEeCCCCceeeeeeEEEEcCC
Q psy14540         77 YQCTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        77 y~C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      |+|.+.|..|..+..+.|.|...+
T Consensus        85 Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          85 YNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             EEEEEECSSCEEEEEECCCCSCSS
T ss_pred             EEEEEEECCCeEEEEEEEEEECCC
Confidence            999999999999999888886543

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-13  Score=87.03  Aligned_cols=98  Identities=20%  Similarity=0.286  Sum_probs=66.5

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCC---CceeEEeECCEeccC---CCceEEeccCCceEEEEEeeCCCCCceeEEEEEE
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDP---PLTISWLKNGLPILS---DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS  184 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  184 (291)
                      ..+....+.+|+.++|.|.+ .|.|   .|.+.|++++.....   ..+....          ...-.....        
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~----------~~~~~~~~~--------   65 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKV-KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLK----------ETFERHSRV--------   65 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEE-ECCCSSSCCEEEEEESSSCCHHHHTTSSEEEE----------EEEETTTTE--------
T ss_pred             ECCceEEEeCCCEEEEEEEE-ccCCCCCCCEEEEEEeeccccccccceeeeec----------cceeeEeec--------
Confidence            44566889999999999999 5777   579999998643211   1111110          000000010        


Q ss_pred             ecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540        185 NTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI  243 (291)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~  243 (291)
                                      ....|.|.++...|+|.|+|.|.|..|..+..+.|.|..++..
T Consensus        66 ----------------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~  108 (113)
T d2dava1          66 ----------------YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT  108 (113)
T ss_dssp             ----------------EEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEECCCCS
T ss_pred             ----------------CEEEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEEcCCCc
Confidence                            1346888899999999999999999988888889998766543

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.4e-13  Score=85.15  Aligned_cols=88  Identities=23%  Similarity=0.346  Sum_probs=65.5

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  199 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~  199 (291)
                      .++...|.|.+ .|.|.|.+.|+++|..+....+......          ....                         .
T Consensus        15 ~~~~~~i~~~v-~G~P~P~i~W~~~g~~l~~~~~~~~~~~----------~~~~-------------------------~   58 (103)
T d1wwbx_          15 SDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTKIH----------VTNH-------------------------T   58 (103)
T ss_dssp             CCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEE----------EECS-------------------------S
T ss_pred             cceeEEEEEEE-EEeCCCEEEEEECCEEeeeeeeeeeeec----------cccc-------------------------c
Confidence            56777899998 7999999999999999876554332210          0000                         0


Q ss_pred             ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540        200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI  243 (291)
Q Consensus       200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~  243 (291)
                      .....|.|..+...|+|.|+|.|+|..|..+.++.|.|...|.+
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~i  102 (103)
T d1wwbx_          59 EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI  102 (103)
T ss_dssp             EEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCCC
T ss_pred             cceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEEEEEeCCCC
Confidence            01346888888889999999999999999888888888877765

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.43  E-value=2.6e-13  Score=86.37  Aligned_cols=97  Identities=24%  Similarity=0.288  Sum_probs=57.7

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|++++............   ...........                     
T Consensus        12 P~~~tv~~G~~v~l~C~v-~g~P~p~v~W~k~~~~~~~~~~~~~~---~~~~~~~~~~~---------------------   66 (109)
T d2fdbp2          12 PANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDGL---PYLKVLKAAGV---------------------   66 (109)
T ss_dssp             SCCEEECTTCCEEEEEEE-ECSSCCEEEEEEEC----------------CEEEECCEEE---------------------
T ss_pred             CCCEEEecCCcEEEEEEE-EEcCCCeEEEEecCccCCceeccCCc---eeEeeccccee---------------------
Confidence            566889999999999999 69999999999976543211100000   00000000000                     


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                         .........|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus        67 ---~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          67 ---NTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             ---EETTEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             ---EEecCCcEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence               000012356777888888888888888888877777777766

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.1e-14  Score=85.92  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=31.2

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL  149 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~  149 (291)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|++++..+.
T Consensus        11 p~~~~~~~G~~~~l~C~a-~G~P~P~v~W~k~g~~~~   46 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGTFPL   46 (84)
T ss_dssp             CSEEEEETTCEECCCCCC-EEESCCEEEEEETTTEEC
T ss_pred             CccEEEeCCCEEEEEEEE-eEcCccEEEEEEeeccce
Confidence            456788899999999999 799999999999887653

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6e-13  Score=84.63  Aligned_cols=96  Identities=22%  Similarity=0.328  Sum_probs=61.7

Q ss_pred             ccCCcceeecCCCceEEEEEeeCCCC---CceeEEeECCEeccCCC---ceEEeccCCceEEEEEeeCCCCCceeEEEEE
Q psy14540        110 TSNSRSIKVHSGDRAGVQCLVTKGDP---PLTISWLKNGLPILSDA---EITIRSSGEYTSSLSIATLSTGHSGNYTCVA  183 (291)
Q Consensus       110 ~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  183 (291)
                      ...+....+.+|++++|.|.+ .|.|   .|.+.|++++.......   +.....        .. . ....        
T Consensus         8 v~~P~~~~v~~G~~v~l~C~v-~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~--------~~-~-~~~~--------   68 (110)
T d2avga1           8 VMRPQDGEVTVGGSITFSARV-AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD--------SY-D-RASK--------   68 (110)
T ss_dssp             EECCCCEEEETTSEEEEEEEE-ECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEE--------EE-E-TTTT--------
T ss_pred             EECCCeEEEECCCCEEEEEee-cCCCCCCCCEEEEEeCceeeecccCCceeEeee--------ee-E-Eecc--------
Confidence            345667889999999999999 5777   57899999875432211   111110        00 0 0000        


Q ss_pred             EecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC
Q psy14540        184 SNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP  240 (291)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~  240 (291)
                                      .....|.|.++...|+|.|+|.|.|..|..+.++.|.|..+
T Consensus        69 ----------------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          69 ----------------VYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             ----------------EEEEEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             ----------------cCEEEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEEec
Confidence                            01345777777778888888888888877777888877653

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=3e-13  Score=86.13  Aligned_cols=91  Identities=23%  Similarity=0.459  Sum_probs=58.8

Q ss_pred             eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      .+.+|+.+.|.|.+..|.|.+.+.|++++..+...............                                .
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--------------------------------~   60 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS--------------------------------F   60 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSC--------------------------------E
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCce--------------------------------E
Confidence            57789999999998668999999999999887554332211111000                                1


Q ss_pred             EEeccceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEEEEec
Q psy14540        197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNLRVNV  239 (291)
Q Consensus       197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~v~~  239 (291)
                      ........|.|.++..+|+|.|+|.|.|..|..  +..+.|.|..
T Consensus        61 ~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          61 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             EECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             EEeecccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEEe
Confidence            111224567778888888888888888877654  4455666654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.4e-13  Score=83.61  Aligned_cols=70  Identities=21%  Similarity=0.377  Sum_probs=55.4

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      ...+.+|+.+.|.|.+ .+ |.+.+.|+++|..+..+. ...+... .+...|.|.++...|+|.|+|.|.|..
T Consensus        15 ~~~v~~G~~v~l~c~v-~~-p~~~v~W~k~g~~i~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~n~~   85 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVEL-AD-HDAEVKWLKNGQEIQMSGSKYIFESI-GAKRTLTISQCSLADDAAYQCVVGGEK   85 (94)
T ss_dssp             EEEEETTSCEEEEEEC-SS-SSSCCEEEESSSEECCCSSSSEEEEE-TTEEEEEECSCSSSSCEEEEEEETTEE
T ss_pred             CEEECcCCeEEEEEEE-CC-CCceEEEEEcCccceeeeeeEeeecc-CCeEEeecCCCCceecEEEEEEEeeEE
Confidence            3578899999999998 44 788999999999987654 3444333 346789999999999999999987643

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6e-13  Score=83.77  Aligned_cols=84  Identities=26%  Similarity=0.425  Sum_probs=60.2

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE  200 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~  200 (291)
                      +....|.|.+ .|.|.|.+.|+++|..+.............              .                      ..
T Consensus        17 ~~~~~i~~~v-~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~--------------~----------------------~~   59 (105)
T d1wwca_          17 RLEHCIEFVV-RGNPPPTLHWLHNGQPLRESKIIHVEYYQE--------------G----------------------EI   59 (105)
T ss_dssp             CCEEEEEEEE-ECSSCCEEEEEETTEECCCSSSEEEEEEEC--------------S----------------------SE
T ss_pred             EEEEEEEEEE-EEeCCCeEEEEeCccccCCCcceeeeEEee--------------c----------------------cc
Confidence            3445678888 699999999999999987665433211000              0                      01


Q ss_pred             cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        201 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       201 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                      ....|.|..+..+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          60 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             EEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred             ceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEEEeCC
Confidence            13467888888888999999999998888888888877655

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.1e-14  Score=86.50  Aligned_cols=77  Identities=25%  Similarity=0.340  Sum_probs=49.5

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCce-eEEEEEEecCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG-NYTCVASNTVASDN  191 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~  191 (291)
                      +....+.+|+.+.|.|.+ .|.|.|.+.|++++..+......   ........|.|.++..+|.| .|+|.|.|..|...
T Consensus         9 ~~~~~v~~G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~   84 (92)
T d2ifga1           9 VPNASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATVMK---SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAE   84 (92)
T ss_dssp             CCSSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEECC---CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECC
T ss_pred             CCCEEEeCCCEEEEeeec-cCCCCcEEEEEECCceeeeeeee---eeeccceeEEEccccccccceEEEEEEEcCCCEEE
Confidence            345678899999999999 69999999999998766432111   11223445555555555555 35555555555444


Q ss_pred             Cc
Q psy14540        192 HS  193 (291)
Q Consensus       192 ~~  193 (291)
                      ..
T Consensus        85 ~s   86 (92)
T d2ifga1          85 VS   86 (92)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-12  Score=82.30  Aligned_cols=37  Identities=19%  Similarity=0.272  Sum_probs=30.0

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCC-CceeEEeECCEec
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPI  148 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~  148 (291)
                      ..+....+..|+.+.|.|.+ .+.| .|.+.|++++..+
T Consensus         8 ~~~~~~~v~~G~~v~L~C~v-~g~p~~P~v~W~k~~~~~   45 (104)
T d2aw2a1           8 KRQSEHSILAGDPFELECPV-KYCANRPHVTWCKLNGTT   45 (104)
T ss_dssp             CTTEEEEEETTSCEEEEEEE-ECSSSCCEEEEEEECSSC
T ss_pred             ecCCeEEEeCCCeEEEEEEE-EeeCCCCEEEEEecCccc
Confidence            34455788899999999999 5777 5899999987655

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.39  E-value=7.2e-13  Score=81.67  Aligned_cols=76  Identities=16%  Similarity=0.332  Sum_probs=56.1

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+..+.+.+|+.+.|.|.+ .|.|.+ .+.|+++|..+............  ...|.|.++..+|.|.|+|.|.|..|.
T Consensus         7 ~~p~~~~v~~g~~~~l~C~~-~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~a~N~~G~   83 (94)
T d1biha1           7 DQPAEVLFRENNPTVLECII-EGNDQGVKYSWKKDGKSYNWQEHNAALRKD--EGSLVFLRPQASDEGHYQCFAETPAGV   83 (94)
T ss_dssp             CCCSEEEEETTSCEEECCCE-ESCCSSCEEEEEESSSBCCTTTTTEEECTT--SCCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ecCCcEEEeCCCeEEEEEEe-cCCCCeeEEEEEeeeeeeeeecceeeeccc--ceEEEEeccChhcCeEEEEEEEeCCCE
Confidence            44566889999999999999 577754 79999999988665543333222  345788888888888888888877764

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=7.2e-14  Score=88.13  Aligned_cols=38  Identities=26%  Similarity=0.651  Sum_probs=32.0

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCc
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE  153 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~  153 (291)
                      ..+.+|+.++|.|.+..|.|.+.+.|++++..+.....
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~   49 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPK   49 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSS
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCc
Confidence            45778999999999866899999999999988765543

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.39  E-value=1e-13  Score=87.21  Aligned_cols=83  Identities=20%  Similarity=0.281  Sum_probs=59.0

Q ss_pred             ceeec-ceeeeecCCcEEEEEEe-cCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540          5 LIYKF-IQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus         5 ~~~~~-~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      |...+ ..+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+.....  .........  .+|.|.+++.+|+|.|+|.+.
T Consensus         6 F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~--~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~   81 (105)
T d1cs6a2           6 FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD--GRRFVSQTT--GNLYIAKTEASDLGNYSCFAT   81 (105)
T ss_dssp             CCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCC--SSEEECTTT--CCEEESSCCGGGCEEEEEEEE
T ss_pred             ccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeecccccccc--ceeeeecCC--CEEeecccccccCcEEEEEEE
Confidence            44444 45789999999999997 4688899999999876541110  000111111  359999999999999999999


Q ss_pred             CCCCceeee
Q psy14540         83 NRVGSQTHS   91 (291)
Q Consensus        83 ~~~~~~~~~   91 (291)
                      |..+.....
T Consensus        82 N~~g~~~~~   90 (105)
T d1cs6a2          82 SHIDFITKS   90 (105)
T ss_dssp             EEETTEEEE
T ss_pred             ECCCCEEEE
Confidence            877765544

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.7e-13  Score=82.26  Aligned_cols=71  Identities=17%  Similarity=0.241  Sum_probs=50.8

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      ..+..+.+.+|+.+.|.|.+ .+.| .+.+.|+|++..+....+.....    ...|.|.++..+|+|.|+|.+.|.
T Consensus        11 ~~~~~v~~~~G~~v~L~C~~-~g~~~~~~i~W~k~~~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~   82 (93)
T d1n26a1          11 VARGVLTSLPGDSVTLTCPG-VEPEDNATVHWVLRKPAAGSHPSRWAGM----GRRLLLRSVQLHDSGNYSCYRAGR   82 (93)
T ss_dssp             CCTTEEEECTTCCEEEECTT-SCTTCCSEEEEEEECSSSSCCCEEEEEE----SSEEEECSCCGGGCEEEEEESSSS
T ss_pred             eCCCCEEEeCCCcEEEEEEe-ecCCCCceEEEEEccccccceeeEEecC----CCEEEECCCChhcCEEEEEEECCc
Confidence            44556788899999999998 4544 56999999998886654433221    235777777777777777776553

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.2e-13  Score=84.01  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=65.9

Q ss_pred             ecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540          8 KFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      .|....+.+|+.+.|.|.+. +.+.+.|.|++++..+........... ..+   .+|.|.+++..|+|.|+|.+.|..|
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~-~~~---~~L~I~~v~~~D~G~Y~C~a~N~~g   83 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIH-QHK---EKLWFVPAKVEDSGHYYCVVRNSSY   83 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEE-EET---TEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEe-ccC---CEEEeccceecCCEEEEEEEECCCC
Confidence            45556788999999999886 478889999998865541110000001 111   3599999999999999999999999


Q ss_pred             ceeeeeeEEEEcC
Q psy14540         87 SQTHSADMRVYDA   99 (291)
Q Consensus        87 ~~~~~~~l~v~~~   99 (291)
                      .....+.|.|...
T Consensus        84 ~~~~~~~L~V~~~   96 (101)
T d1iray1          84 CLRIKISAKFVEN   96 (101)
T ss_dssp             EEEEEEEEEEECC
T ss_pred             eEEEEEEEEEEeC
Confidence            9999999999864

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.9e-12  Score=80.18  Aligned_cols=74  Identities=24%  Similarity=0.439  Sum_probs=43.0

Q ss_pred             cceeecCCCceEEEEEeeCCCC-CceeEEeE-CCEeccC-CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP-PLTISWLK-NGLPILS-DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~-~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ....+..|+.+.|.|.+ .+.| .+.+.|++ ++..+.. ..+............|.|.++..+|.|.|+|.|.|..|
T Consensus         8 ~~~~v~~G~~~~l~C~v-~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   84 (97)
T d1epfa1           8 SQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG   84 (97)
T ss_dssp             SSEEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred             CCEEEccCCcEEEEEEE-EeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCC
Confidence            44678899999999998 6776 47999998 4454433 22333222222233444444444444444444444443

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=4.2e-13  Score=84.40  Aligned_cols=93  Identities=12%  Similarity=0.144  Sum_probs=64.0

Q ss_pred             CCc-ceeecceeeeecCCcEEEEEEecC-C--CCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQ-LIYKFIQQTLQPGPPVSLKCIATG-N--PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~-~~~~~~~~~v~~g~~v~l~C~~~~-~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      ||. +.+.+.+..+.+|+.++|.|.+.+ .  |.+.++|+++++.+........  ........+.|.|.....+|.|.|
T Consensus         1 PP~~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~--~~~~~~~~s~l~~~~~~~d~g~~y   78 (106)
T d1zxqa1           1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKA--APAPQEATATFNSTADREDGHRNF   78 (106)
T ss_dssp             CCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSS--TTCTTCEEEEEEEECCGGGGGCEE
T ss_pred             CCcCCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceE--eecccceeEEEEEeeehhcCCcEE
Confidence            454 456777788999999999999987 4  3457999999998762221111  112233456677777777788899


Q ss_pred             EEEEeCCCCceeeeeeEEE
Q psy14540         78 QCTATNRVGSQTHSADMRV   96 (291)
Q Consensus        78 ~C~~~~~~~~~~~~~~l~v   96 (291)
                      +|++.|..+.....+.+.+
T Consensus        79 tC~A~n~~~~~~~~~~~~~   97 (106)
T d1zxqa1          79 SCLAVLDLMSRGGNIFHKH   97 (106)
T ss_dssp             EEEEEEECGGGTCCEEEEE
T ss_pred             EEEEEecCCCCCCeeEecc
Confidence            9999987765544444444

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.9e-13  Score=82.06  Aligned_cols=78  Identities=23%  Similarity=0.442  Sum_probs=58.6

Q ss_pred             cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540          9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      .....+.+|+++.|.|.+.+ +.+.+.|+++|..+...  ++..     ..+   .+|.|.+++.+|+|.|+|.+.+..+
T Consensus         4 ~~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~-----~~~---~~L~I~~v~~~DsG~Y~C~A~n~~g   74 (92)
T d1olza1           4 YRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGL-----MGR---KNLLIFNLSEGDSGVYQCLSEERVK   74 (92)
T ss_dssp             EEEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCC-----TTT---TCEEECSCCGGGCEEEEEEEEEECS
T ss_pred             hhheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeec-----cee---eEEEECCCCHHHCcEEEEEEEEcCC
Confidence            34578999999999999987 66799999999887632  2111     111   2499999999999999999998777


Q ss_pred             ceeeeeeEE
Q psy14540         87 SQTHSADMR   95 (291)
Q Consensus        87 ~~~~~~~l~   95 (291)
                      .......+.
T Consensus        75 ~~~~~~~l~   83 (92)
T d1olza1          75 NKTVFQVVA   83 (92)
T ss_dssp             SSEEEEEEE
T ss_pred             CEEEEEEEE
Confidence            655444433

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.3e-12  Score=80.57  Aligned_cols=91  Identities=23%  Similarity=0.383  Sum_probs=56.3

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      .+....+.+|+.+.|.|.+ .+.|.+ .+.|++++.......                   .....+.|.          
T Consensus         8 ~~~~~~v~~G~~v~l~C~v-~g~P~p~~i~W~k~~~~~~~~~-------------------~~~~~~~~~----------   57 (101)
T d3b5ha1           8 VKSSEHINEGETAMLVCKS-ESVPPVTDWAWYKITDSEDKAL-------------------MNGSESRFF----------   57 (101)
T ss_dssp             SCSEEEECTTSCEEEEEEC-CCSSCCCEEEEEECCSSSCEEC-------------------CTTGGGTEE----------
T ss_pred             cCCcEEECcCCeEEEEEEE-EecCCeeEEEEEeccceeeeec-------------------ccCCCceEE----------
Confidence            3455778899999999999 688866 799999764321100                   000001111          


Q ss_pred             CCceEEEEeccceEEEEeeee-cCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        191 NHSSNLRVNEYTSSLSIATLS-TGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                           +........|.|.++. .+|+|.|+|.|.|..|..+..+.|.|
T Consensus        58 -----~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          58 -----VSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             -----EEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             -----EEeCCCEEEEEEeccccccCCEEEEEEEEECCCEEEEEEEEEE
Confidence                 1111223467777776 46778888888887777777777666

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.36  E-value=1.6e-13  Score=86.40  Aligned_cols=75  Identities=27%  Similarity=0.387  Sum_probs=49.7

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+.+.+|+.+.|.|.+..+.|.+.+.|++++..+............ ..+.|.|.++..+|.|.|+|.|.|..+.
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ-TTGNLYIAKTEASDLGNYSCFATSHIDF   86 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECT-TTCCEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeec-CCCEEeecccccccCcEEEEEEEECCCC
Confidence            45789999999999997678899999999998766433221111111 1224666666666666666666665554

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.35  E-value=1.7e-13  Score=83.32  Aligned_cols=74  Identities=19%  Similarity=0.331  Sum_probs=61.6

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV  187 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  187 (291)
                      .+.....+.+|+.+.|.|.+  +.|.+.+.|++||.++....++.+...+ ....|.|.++..+|+|.|+|.+.|..
T Consensus         6 ~~l~d~~v~~G~~~~~~c~v--s~p~~~v~W~k~g~~i~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~n~~   79 (89)
T d1tiua_           6 KPLYGVEVFVGETAHFEIEL--SEPDVHGQWKLKGQPLTASPDCEIIEDG-KKHILILHNCQLGMTGEVSFQAANAK   79 (89)
T ss_dssp             BCCCCEEEETTSCCCEEEBC--SSSSCCCBCCSSSCCCCSSSSCEEEECS-SCEEEECCSCCSCCCSEECCBCSSCB
T ss_pred             cCCcCEEEeCCCcEEEEEEE--CCCCcEEEEEEeeeecccceeEEEEeec-eeEEEEEcCCChhcCEEEEEEECceE
Confidence            34456889999999999997  3688899999999999888888776654 35689999999999999999887644

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.4e-12  Score=79.52  Aligned_cols=73  Identities=19%  Similarity=0.406  Sum_probs=55.6

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCc--eEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE--ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      .......+.+|+.+.|.|.+ . .|.+.+.|++++.++.....  ...... .....|.|.++..+|+|.|+|.|.|.
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v-~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~   79 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEV-S-EDDANVKWFKNGEEIIPGPKSRYRIRVE-GKKHILIIEGATKADAAEYSVMTTGG   79 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEEC-S-SSSCCCEEEETTEECCCSTTCSEEEEEE-TTEEEEEEEEECTTTCSEEEEEETTE
T ss_pred             cCCCCEEEeCCCcEEEEEEE-C-CCCceEEEEEeecccCCCCCccEEEEEe-CCccEEEECccccccCEEEEEEEecc
Confidence            34566889999999999998 4 47789999999998876554  333322 23567888888888888888888664

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.4e-13  Score=85.86  Aligned_cols=36  Identities=8%  Similarity=0.265  Sum_probs=29.7

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI  148 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~  148 (291)
                      .+..+.+.+|++++|.|.+ .+.|.|.+.|++++..+
T Consensus        10 ~~~~v~v~~g~~v~L~C~~-~g~p~p~v~W~~~~~~~   45 (105)
T d1nbqa1          10 SEPEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDT   45 (105)
T ss_dssp             SCSBCCEETTCCCEEECEE-ESCSSEEEEEEEEETTE
T ss_pred             CCCeEEEeCCCeEEEEEEe-CCCCCCeeEEEeeeece
Confidence            3445778899999999999 68999999999976543

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.5e-12  Score=79.33  Aligned_cols=94  Identities=20%  Similarity=0.253  Sum_probs=62.4

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      ..+.+..|+.+.|.|.+ .+.|.+.+.|+++|..+.........       ......... ..+..              
T Consensus        10 ~~i~v~~G~~v~l~C~v-~g~P~p~i~W~~~g~~i~~~~~~~~~-------~~~~~~~~~-~~~~~--------------   66 (107)
T d1iray3          10 ETMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDDPVLGE-------DYYSVENPA-NKRRS--------------   66 (107)
T ss_dssp             EEEECCTTCCEEEEEEE-EECTTCEEEEEETTEECCTTCSSEEE-------EEEEECCSS-CGGGE--------------
T ss_pred             CEEEEeCCCEEEEEEEe-ccCCCCeEEEEECCcccccccceeee-------eeeeeccce-eeecc--------------
Confidence            44677889999999999 68899999999999988654432211       000000000 00000              


Q ss_pred             eEEEEeccceEEEEeeeecCCCe-eEEEEeeeCCccCCceeEEE
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSG-NYTCVASNTVASDNHSSNLR  236 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~~~~~~~~~l~  236 (291)
                            ...+.|.|..+...|.| .|+|.|.|..|.....+.|.
T Consensus        67 ------~~~~~L~I~~v~~~D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          67 ------TLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             ------EEEEEEEESSCCGGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             ------cceEEEEEeecchHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence                  01346888888888888 49999988888877776664

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2e-12  Score=80.38  Aligned_cols=80  Identities=21%  Similarity=0.296  Sum_probs=58.1

Q ss_pred             eeeecCCcEEEEE------EecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540         12 QTLQPGPPVSLKC------IATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV   85 (291)
Q Consensus        12 ~~v~~g~~v~l~C------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   85 (291)
                      +.+..|....|.|      ...++|.|.|.|++||..+.......   . ..+   ..|.|.+++.+|+|.|+|.+.+..
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~---~-~~~---~~L~I~~v~~~D~G~Y~C~a~n~~   81 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF---S-GVK---DRLIVMNVAEKHRGNYTCHASYTY   81 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSE---E-EET---TEEEESSCCGGGCEEEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEE---E-ecC---CEEEEcccccccCcEEEEEEEECc
Confidence            5689999999999      45678889999999999987322111   1 111   249999999999999999998766


Q ss_pred             Cce----eeeeeEEEEc
Q psy14540         86 GSQ----THSADMRVYD   98 (291)
Q Consensus        86 ~~~----~~~~~l~v~~   98 (291)
                      +..    ...+.+.+..
T Consensus        82 ~g~~~~vt~~i~~~v~~   98 (103)
T d1iray2          82 LGKQYPITRVIEFITLE   98 (103)
T ss_dssp             TTEEEEEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEEEEECC
Confidence            532    3444444443

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.32  E-value=5.8e-13  Score=82.56  Aligned_cols=66  Identities=21%  Similarity=0.474  Sum_probs=42.8

Q ss_pred             CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      |+.+.|.|.+ .|.|.+.+.|+++|..+............  ...|.+..+...|.|.|+|.|.|..|.
T Consensus        22 ~~~v~l~C~~-~g~P~p~v~W~~ng~~i~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~N~~G~   87 (97)
T d1cs6a1          22 EEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLVA--GDLVISNPVKAKDAGSYQCVATNARGT   87 (97)
T ss_dssp             CCEEEECCEE-EEESCCEEEEEETTEECCCSTTSSEEEET--TEEEEESCCHHHHCEEEEEEEEETTEE
T ss_pred             CCeEEEEEEE-EEeCCCEEEEEEeeeeccCCCCceEEeee--eeEEEEecccccCCEEEEEEEEECCCE
Confidence            4789999999 68999999999999998665433222111  223444445555555555555555553

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.6e-11  Score=76.41  Aligned_cols=86  Identities=12%  Similarity=0.216  Sum_probs=56.0

Q ss_pred             ceeecCCCceEEEEEeeCCCCCc--eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPL--TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      ...+.+|+.++|.|.+.+++|.+  .+.|++++..+.....    .....                              
T Consensus        13 ~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~----~~~~~------------------------------   58 (103)
T d1iama1          13 PSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA----VGEPA------------------------------   58 (103)
T ss_dssp             CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC----CTTTE------------------------------
T ss_pred             CceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc----ccccc------------------------------
Confidence            34678999999999997677765  6889999987742210    01111                              


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI  243 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~  243 (291)
                               .+.|.|..+..+|+|.|+|+|.|..+.....+.+.+..|+.+
T Consensus        59 ---------~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~~~~~s~p~~L  100 (103)
T d1iama1          59 ---------EVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQL  100 (103)
T ss_dssp             ---------EEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEEC
T ss_pred             ---------eEEEEEeeehhHCCCEEEEEEEeCCCCccCeEeeeEcCCCEE
Confidence                     234566666666667777777776666666666666655544

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.4e-12  Score=81.87  Aligned_cols=86  Identities=14%  Similarity=0.180  Sum_probs=53.6

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      ..+.+|+.++|.|.+.+++|  .+.++|++++..+..............                               
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~-------------------------------   60 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE-------------------------------   60 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTC-------------------------------
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccc-------------------------------
Confidence            46779999999999966665  458999999988753221111000000                               


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV  239 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~  239 (291)
                             ..+.|.+.....+|+|.|+|+|.|..+.....+.+.+..
T Consensus        61 -------~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~~~~~~~s~   99 (106)
T d1zxqa1          61 -------ATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFHKHSA   99 (106)
T ss_dssp             -------EEEEEEEECCGGGGGCEEEEEEEEECGGGTCCEEEEECC
T ss_pred             -------eeEEEEEeeehhcCCcEEEEEEEecCCCCCCeeEecccC
Confidence                   023455566666777777777777776555555555543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.30  E-value=3.7e-12  Score=76.57  Aligned_cols=66  Identities=27%  Similarity=0.404  Sum_probs=48.4

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      .+....+.+|+.++|.|.+ .+.|. ..+.|++||..+...           ...|.|..+..+|.|.|+|.+.|..+.
T Consensus        10 ~P~~~~v~~G~~v~L~C~~-~~~~~~~~~~w~~~g~~~~~~-----------~~~l~i~~v~~~dsG~Y~C~a~ns~~S   76 (85)
T d2fcba1          10 EPQWINVLQEDSVTLTCRG-THSPESDSIQWFHNGNLIPTH-----------TQPSYRFKANNNDSGEYTCQTGQTSLS   76 (85)
T ss_dssp             ESCCSEEETTCEEEEEEEC-SSCCCTTCCEEEETTEECTTC-----------CSSEEEEECCGGGCEEEEEECTTSBCC
T ss_pred             CCCCeEEcCCCeEEEEEEE-eeccceeEEEeeccccccccc-----------ccceEEeeccccCCcEEEEECCCCccc
Confidence            3445678899999999998 46554 478999999887543           234777778888888888877765443

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.30  E-value=2.6e-13  Score=85.96  Aligned_cols=85  Identities=22%  Similarity=0.303  Sum_probs=58.8

Q ss_pred             eeeeecCCcEEEEEEe-cCCCCCeeEEEECCeecCC-CeeEe-ceEEeeccceEEEEEEeecCCCCCe---EEEEEEeCC
Q psy14540         11 QQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAG-DRFVM-GQYMSLHGDVISHVNISSVRVEDSG---IYQCTATNR   84 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~-~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~~~~~   84 (291)
                      +.++.+|++++|.|.+ .+.|.+.+.|++++..+.. ..... .........  .+|.|.+++..|+|   .|.|.+.|.
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~gd~g~Y~C~A~N~   88 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD--GNLYFTIVTKEDVSDIYKYVCTAKNA   88 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTT--SCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccc--cccEEeeeEeeccCCceEEEEEEEeC
Confidence            4578899999999986 6899999999998766541 11111 000111111  34899999998877   799999999


Q ss_pred             CCceeeeeeEEEE
Q psy14540         85 VGSQTHSADMRVY   97 (291)
Q Consensus        85 ~~~~~~~~~l~v~   97 (291)
                      .|.......+.+.
T Consensus        89 ~g~~~~~~~~~~i  101 (111)
T d1biha2          89 AVDEEVVLVEYEI  101 (111)
T ss_dssp             TCSSCEEEEEEEE
T ss_pred             CCCceEEEEEEEe
Confidence            8877666544443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1e-12  Score=82.36  Aligned_cols=94  Identities=12%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ....+.+.+|+++.|.|.+ .+.|.+.+.|++++.........    ..      .+. ....+..              
T Consensus         7 ~~~~v~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~----~~------~~~-~~~~~~~--------------   60 (102)
T d1f97a1           7 AQSDVQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCY----NS------QIT-APYADRV--------------   60 (102)
T ss_dssp             SCSEEEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEE----TT------EEC-GGGTTTE--------------
T ss_pred             cCCcEEEeCCCEEEEEEEc-CCCCCCeEEEEeccccceeeecc----cc------ccc-cceeeEE--------------
Confidence            3445788999999999999 68899999999855322110000    00      000 0000000              


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                             .....+|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus        61 -------~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          61 -------TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             -------EEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEE
T ss_pred             -------EecCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEEE
Confidence                   0113568888888888888888888888777666665553

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.2e-12  Score=77.40  Aligned_cols=71  Identities=21%  Similarity=0.299  Sum_probs=52.2

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ..+.+|+++.|.|.+ .+ |.+.+.|+++|..+...........   ...|.|.++..+|+|.|+|.|.|..+...
T Consensus         7 ~~~~~G~~~~l~C~~-~g-~~~~v~W~~~g~~l~~~~~~~~~~~---~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1           7 HFFKHGGTAELKCSQ-KS-NLARVFWKFQNGVLKAESPKYGLMG---RKNLLIFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             EEEETTSCEEECCCC-SC-TTCEEEEEESSSBCCCCSSSBCCTT---TTCEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             eeEeCCCEEEEEEEe-ec-cCCceeeecCcccceeeeeeeecce---eeEEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence            578899999999998 56 6679999999988765443222111   23488888888888888888888776543

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.8e-12  Score=77.46  Aligned_cols=29  Identities=21%  Similarity=0.270  Sum_probs=23.4

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEe
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWL  142 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~  142 (291)
                      .....+.+|+.+.|.|.+ .|.|.|.+.|+
T Consensus         8 ~~~~~v~~G~~v~l~C~~-~g~p~p~~~~~   36 (96)
T d2c9aa1           8 IQNVEVNAGQFATFQCSA-IGRTVAGDRLW   36 (96)
T ss_dssp             CCCEEECSSSCEEEEEEE-ESCCCSSCEEE
T ss_pred             cCCEEEeCCCEEEEEEEE-eecCCCcEEEE
Confidence            456789999999999999 68887766554

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.2e-12  Score=80.17  Aligned_cols=84  Identities=17%  Similarity=0.208  Sum_probs=58.3

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCc--eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE--ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN  191 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  191 (291)
                      ..+...+|+.+.|.|.+..+.|.+.+.|++++..+.....  ..+.                                  
T Consensus        10 ~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~----------------------------------   55 (101)
T d1iray1          10 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIH----------------------------------   55 (101)
T ss_dssp             CCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEE----------------------------------
T ss_pred             cEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEe----------------------------------
Confidence            3466778999999999866789999999998865432211  1000                                  


Q ss_pred             CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540        192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV  239 (291)
Q Consensus       192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~  239 (291)
                              ....+|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus        56 --------~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L~V~~   95 (101)
T d1iray1          56 --------QHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVE   95 (101)
T ss_dssp             --------EETTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             --------ccCCEEEeccceecCCEEEEEEEECCCCeEEEEEEEEEEe
Confidence                    0134577777777777777777777777777777777753

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.2e-11  Score=76.78  Aligned_cols=70  Identities=26%  Similarity=0.413  Sum_probs=52.8

Q ss_pred             eeecCCCceEEEE------EeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540        116 IKVHSGDRAGVQC------LVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS  189 (291)
Q Consensus       116 ~~~~~g~~~~l~C------~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  189 (291)
                      ..+..|....|.|      .+ .+.|.|.+.|++||.++...........    ..|.|.++..+|+|.|+|.|.|..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~-~~~p~P~i~W~kdg~~l~~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKN-ENNELPKLQWYKDCKPLLLDNIHFSGVK----DRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCB-TTTBCCCCEEEETTEECCCCSSSEEEET----TEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCcccccc-CCCCCCEEEEEECCccccCCCcEEEecC----CEEEEcccccccCcEEEEEEEECcCC
Confidence            4677899999999      34 6889999999999999976554433322    35888888888888888888776654


Q ss_pred             C
Q psy14540        190 D  190 (291)
Q Consensus       190 ~  190 (291)
                      .
T Consensus        84 ~   84 (103)
T d1iray2          84 K   84 (103)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=2.5e-11  Score=79.06  Aligned_cols=94  Identities=15%  Similarity=0.199  Sum_probs=62.5

Q ss_pred             eecceeeeecCCcEEEEEEecC---CCCCeeEEEECCeecC-----CC---------eeEeceEE--eeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPLA-----GD---------RFVMGQYM--SLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~-----~~---------~~~~~~~~--~~~~~~~~~l~i~   67 (291)
                      .+..++.+.+|++++|.|.+..   .....+.|++.+....     ..         .+......  .....+.++|.|.
T Consensus         7 ~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   86 (126)
T d1pkoa_           7 GPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQ   86 (126)
T ss_dssp             CCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEES
T ss_pred             CCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEE
Confidence            3344578899999999999864   2345689998543110     00         00000011  1112345889999


Q ss_pred             ecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCC
Q psy14540         68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +++.+|+|.|.|.+.+..+.....+.|.|.++.
T Consensus        87 ~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          87 NVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             EEchhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            999999999999999877778888888887644

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.23  E-value=1.1e-11  Score=74.20  Aligned_cols=65  Identities=23%  Similarity=0.346  Sum_probs=47.6

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      .+....+.+|+.++|.|.+ .+.|.+ .+.|++++..+...           ...|.|..+..+|+|.|+|.+.+...
T Consensus        11 ~P~~~~v~~G~~vtL~C~~-~~~~~~~~~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1          11 EPQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISSQ-----------ASSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             ESCCSEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEESS-----------CSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             CCCCcEEeCCCeEEEEEEe-ccCCCCeEEEEeeeceeeeec-----------ceeeEecCCcccCCEEEEEEccCCCc
Confidence            3445678899999999998 676766 46677888766432           23578888888888888888766543

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.1e-11  Score=73.78  Aligned_cols=64  Identities=20%  Similarity=0.338  Sum_probs=45.4

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      +....+.+|+.++|.|.+ .+.|.+ .+.|++++..+...           ...|.|..++.+|+|.|.|.+.|...
T Consensus         8 P~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~~~~~~~~~~-----------~~~l~i~~v~~~d~G~Y~C~a~~s~~   72 (82)
T d1f2qa1           8 PPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEET-----------NSSLNIVNAKFEDSGEYKCQHQQVNE   72 (82)
T ss_dssp             SSCSEEETTCCEEEECCT-TCC----CCEEEETTEECSCC-----------SSEEEECSCCGGGCEEEEEECTTSSC
T ss_pred             CCCeEEeCCCeEEEEEEE-eeeeeecceeeeeeeeeeecc-----------cceeEECCCChhhCCcEEEEecCCCC
Confidence            344678899999999999 576765 56678888776533           23578888888888888888776544

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.5e-13  Score=85.29  Aligned_cols=94  Identities=21%  Similarity=0.375  Sum_probs=62.5

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      ....+.+|+.+.|.|.+....|.+.+.|++++..+.......          +.+......+                  
T Consensus        14 ~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~----------~~~~~~~~~~------------------   65 (115)
T d2crya1          14 QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGR----------YTVETISTEE------------------   65 (115)
T ss_dssp             CCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETT----------EEEEEEEETT------------------
T ss_pred             CCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeee----------Eeeeeecccc------------------
Confidence            345677999999999994345677899999998775432110          0000000000                  


Q ss_pred             eEEEEeccceEEEEeeeecCC-CeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540        194 SNLRVNEYTSSLSIATLSTGH-SGNYTCVASNTVASDNHSSNLRVNVPP  241 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~~~~~~~~~l~v~~~p  241 (291)
                            ...+.|.|.++...| +|.|+|.|.|..|..+..+.|.|...+
T Consensus        66 ------~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~  108 (115)
T d2crya1          66 ------GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSE  108 (115)
T ss_dssp             ------EEEEEEECTTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             ------CcEEEEEEeccchhcCCeEEEEEEEECCCeEEEEEEEEEECCC
Confidence                  012457788888877 688888888888888888888887544

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3e-11  Score=74.00  Aligned_cols=83  Identities=16%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             eeeeecCCcEEEEEEecCCCCCeeEEEECCeecC---CCeeEece---EEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA---GDRFVMGQ---YMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      .+....|++|+|.|... .|.+.|.|++++..+.   ........   .........++|+|.+++.+|+|.|+|.+.+.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            46788999999999864 6788999999887653   11111100   00000112356999999999999999999765


Q ss_pred             CCceeeeeeEEE
Q psy14540         85 VGSQTHSADMRV   96 (291)
Q Consensus        85 ~~~~~~~~~l~v   96 (291)
                      .+.  ....|+|
T Consensus        83 ~~t--~~~~l~V   92 (93)
T d1ccza1          83 TDT--MKFFLYV   92 (93)
T ss_dssp             CSC--EEEEEEE
T ss_pred             CcE--EEEEEEE
Confidence            443  3444544

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=1.2e-11  Score=76.29  Aligned_cols=85  Identities=16%  Similarity=0.302  Sum_probs=56.6

Q ss_pred             eeeeecCCcEEEEEEecC--CCCCeeEEEECCeecC---C--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540         11 QQTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLA---G--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~---~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      .+....|++|+|.|....  .....|.|++++..+.   .  .............+  .+|+|.+++.+|+|.|+|.+.+
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~n--gSL~I~nl~~~DsG~Y~c~v~~   81 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN--GDLKIKNLTRDDSGTYNVTVYS   81 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT--SCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCC--ccEEEeCCCHHHCEEEEEEEEe
Confidence            345678999999996432  2334699999887663   1  11111111111112  4599999999999999999998


Q ss_pred             CCCce--eeeeeEEEE
Q psy14540         84 RVGSQ--THSADMRVY   97 (291)
Q Consensus        84 ~~~~~--~~~~~l~v~   97 (291)
                      ..|..  .+.+.|.|+
T Consensus        82 ~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          82 TNGTRILNKALDLRIL   97 (98)
T ss_dssp             TTCCEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEE
Confidence            77765  556667765

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.13  E-value=9.7e-12  Score=78.57  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=28.9

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS  150 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~  150 (291)
                      ..+.+|+.+.|.|.+..|.|.|.+.|++++..+..
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~   46 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADP   46 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCG
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccc
Confidence            45678999999998756999999999998766543

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.11  E-value=2.3e-10  Score=71.28  Aligned_cols=80  Identities=18%  Similarity=0.239  Sum_probs=54.1

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--Ceec----C-CCee---EeceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPL----A-GDRF---VMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~----~-~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+++.+|++++|.|.........+.||+.  |...    . ....   .............++|+|.+++.+|
T Consensus         2 qltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~D   81 (106)
T d1a0ql1           2 ELTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPED   81 (106)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred             ceECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccC
Confidence            356788899999999999999987655556999982  2211    0 0000   0011112223345789999999999


Q ss_pred             CeEEEEEEeC
Q psy14540         74 SGIYQCTATN   83 (291)
Q Consensus        74 ~G~y~C~~~~   83 (291)
                      +|.|.|....
T Consensus        82 sA~YyCa~~~   91 (106)
T d1a0ql1          82 IATYYCLQYY   91 (106)
T ss_dssp             CSEEEEEECS
T ss_pred             CEeEEEEEeC
Confidence            9999998754

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.8e-10  Score=73.62  Aligned_cols=92  Identities=18%  Similarity=0.259  Sum_probs=61.1

Q ss_pred             eeecceeeeecCCcEEEEEEecCC---CCCeeEEEECCe--ec----C---------CCeeEeceEEeeccceEEEEEEe
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGY--PL----A---------GDRFVMGQYMSLHGDVISHVNIS   67 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~--~~----~---------~~~~~~~~~~~~~~~~~~~l~i~   67 (291)
                      +..|..+.+.+|++|+|.|.+...   ....+.|++...  .+    .         ..+..   .........++|+|.
T Consensus         3 it~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~---~~~~~~~~~~sL~I~   79 (116)
T d1xeda_           3 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRAN---LTNFPENGTFVVNIA   79 (116)
T ss_dssp             SBCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEE---EEEETTTTEEEEEEC
T ss_pred             ccCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCcc---EeeeCCCCEEEEEEh
Confidence            346788899999999999998642   234578987321  11    0         11111   122334456789999


Q ss_pred             ecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCC
Q psy14540         68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP  100 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~  100 (291)
                      +++.+|+|.|.|.+..........+.|+|.+..
T Consensus        80 ~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (116)
T d1xeda_          80 QLSQDDSGRYKCGLGINSRGLSFDVSLEVLEHH  112 (116)
T ss_dssp             SCCGGGCEEEEEEESCGGGCCEEEEEEEEECCC
T ss_pred             hhCcCCCEEEEEEEEcCCCCceEeEEEEEECCC
Confidence            999999999999987544445556778887654

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=1.1e-10  Score=73.07  Aligned_cols=90  Identities=9%  Similarity=0.099  Sum_probs=56.5

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCee---------E-----eceEEeeccceEEEEEEeecC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRF---------V-----MGQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---------~-----~~~~~~~~~~~~~~l~i~~~~   70 (291)
                      +++.+.+..+.+|++|.|.|.........+.|+|+.........         .     ...+....++  .+|.|.+++
T Consensus         2 vti~~~P~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~n--gSL~I~~v~   79 (107)
T d1l6za1           2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN--GSLLFQMIT   79 (107)
T ss_dssp             CEEEEESSSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTT--SCEEECSCC
T ss_pred             cEEEEcCCcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEccc--ccEEEcCCC
Confidence            45566666788999999999855444667999995432111000         0     0011111222  469999999


Q ss_pred             CCCCeEEEEEEeCCCC-ceeeeeeEEE
Q psy14540         71 VEDSGIYQCTATNRVG-SQTHSADMRV   96 (291)
Q Consensus        71 ~~d~G~y~C~~~~~~~-~~~~~~~l~v   96 (291)
                      .+|+|.|+|.+.+..+ .....+.|.|
T Consensus        80 ~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          80 MKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             GGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             chhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            9999999999975543 3444455544

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=7.1e-10  Score=71.05  Aligned_cols=81  Identities=17%  Similarity=0.266  Sum_probs=57.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecCC-----------CeeEe-------ce-EEeeccce
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLAG-----------DRFVM-------GQ-YMSLHGDV   60 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~~-----------~~~~~-------~~-~~~~~~~~   60 (291)
                      +|++.+.|..+.+.+|++++|.|.+.+.....+.|++  .++.+..           .....       .. ........
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            5889999999999999999999998776667799998  2222110           00000       00 01112234


Q ss_pred             EEEEEEeecCCCCCeEEEEEEe
Q psy14540         61 ISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        61 ~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      .++|+|.+++.+|+|.|.|.+.
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEe
Confidence            4789999999999999999875

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.07  E-value=5.5e-10  Score=69.79  Aligned_cols=79  Identities=22%  Similarity=0.320  Sum_probs=53.9

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----CC---eeEeceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----GD---RFVMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+.+.+|++++|.|.........+.||+.  |+...     ..   ......+........+.|+|.+++.+|
T Consensus         3 ~~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1j1pl_           3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCC
Confidence            356788889999999999999987655567999982  32211     00   000011122223345789999999999


Q ss_pred             CeEEEEEEe
Q psy14540         74 SGIYQCTAT   82 (291)
Q Consensus        74 ~G~y~C~~~   82 (291)
                      +|.|.|...
T Consensus        83 sa~YyCa~~   91 (107)
T d1j1pl_          83 FGMYFCQQA   91 (107)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEEEcC
Confidence            999999765

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.05  E-value=5.3e-10  Score=69.71  Aligned_cols=79  Identities=16%  Similarity=0.288  Sum_probs=53.3

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-----CC---eeEeceEEeeccceEEEEEEeecCCCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-----GD---RFVMGQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-----~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      +++.|..+++.+|++++|.|...+.....+.||+  .++...     ..   .....++........+.|+|.+++.+|+
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDV   83 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccC
Confidence            4567888999999999999998765455799998  222111     00   0000111122233457899999999999


Q ss_pred             eEEEEEEeC
Q psy14540         75 GIYQCTATN   83 (291)
Q Consensus        75 G~y~C~~~~   83 (291)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1ospl1          84 ATYFCQQYW   92 (107)
T ss_dssp             SEEEEEECS
T ss_pred             CcEEEeecc
Confidence            999998753

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.04  E-value=4.3e-10  Score=70.01  Aligned_cols=80  Identities=20%  Similarity=0.331  Sum_probs=53.7

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-----CCe---eEeceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-----GDR---FVMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-----~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+.+.+|++++|.|.........+.||+  .|+...     ...   ....++........++|+|.+++.+|
T Consensus         3 ~ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (106)
T d1i8ka_           3 ELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSED   82 (106)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCcccc
Confidence            34577888999999999999998765555799997  332211     000   00011111222345789999999999


Q ss_pred             CeEEEEEEeC
Q psy14540         74 SGIYQCTATN   83 (291)
Q Consensus        74 ~G~y~C~~~~   83 (291)
                      +|.|.|....
T Consensus        83 sa~YyCa~~~   92 (106)
T d1i8ka_          83 VGDYYCLQSF   92 (106)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEeEecCc
Confidence            9999998653

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.7e-11  Score=72.16  Aligned_cols=88  Identities=15%  Similarity=0.138  Sum_probs=54.1

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      +....|++|+|.|..  ..|.+.+.|++++..+.............                              ..-.
T Consensus         5 v~~~~G~sVtl~c~~--~~p~~~v~W~~~~~~i~~~~~~~~~~~~~------------------------------~~~~   52 (93)
T d1ccza1           5 IYGVVYGNVTFHVPS--NVPLKEVLWKKQKDKVAELENSEFRAFSS------------------------------FKNR   52 (93)
T ss_dssp             EEEETTCCEEECCCC--SSCCSCEEEEETTEEEEEEETTEEEECGG------------------------------GTTS
T ss_pred             EEEEECCCEEEEecC--CCCCcEEEEEEeccccceeeecceeeCCC------------------------------ccce
Confidence            567789999999986  45788999999886653211110000000                              0001


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  237 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v  237 (291)
                      +.+.....+|.|.+++.+|+|.|+|.+.|..+  +..+.|.|
T Consensus        53 ~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~~--t~~~~l~V   92 (93)
T d1ccza1          53 VYLDTVSGSLTIYNLTSSDEDEYEMESPNITD--TMKFFLYV   92 (93)
T ss_dssp             EEECTTTCCEEECSCCGGGCEEEEEECTTCCS--CEEEEEEE
T ss_pred             EEEcCCeeEEEEEecChhhCEEEEEEEECCCc--EEEEEEEE
Confidence            11223356789999999999999999877654  33344443

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.03  E-value=8.5e-10  Score=68.55  Aligned_cols=80  Identities=20%  Similarity=0.230  Sum_probs=53.6

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-----CCeeE---eceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-----GDRFV---MGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-----~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+.+.+|++++|.|.........+.||+  .|+...     .....   ............+.|.|.+++.+|
T Consensus         3 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1c5cl1           3 QLTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccC
Confidence            34577888999999999999998765566799998  332210     00000   001111122335789999999999


Q ss_pred             CeEEEEEEeC
Q psy14540         74 SGIYQCTATN   83 (291)
Q Consensus        74 ~G~y~C~~~~   83 (291)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (107)
T d1c5cl1          83 FADYYCLQYA   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CeEEEEecCc
Confidence            9999998653

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=99.02  E-value=1.8e-09  Score=68.42  Aligned_cols=81  Identities=21%  Similarity=0.325  Sum_probs=56.4

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC--------CCeeEeceEE--eeccceEEEEEEeecCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA--------GDRFVMGQYM--SLHGDVISHVNISSVRV   71 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~--------~~~~~~~~~~--~~~~~~~~~l~i~~~~~   71 (291)
                      ++.+.|..+.+.+|++++|.|.........+.||+.  +....        ..........  .......++|+|.+++.
T Consensus         2 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~   81 (114)
T d2cdea1           2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL   81 (114)
T ss_dssp             CEEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCG
T ss_pred             ccEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccCh
Confidence            467889999999999999999987655667999982  21110        1111111111  12233568899999999


Q ss_pred             CCCeEEEEEEeCC
Q psy14540         72 EDSGIYQCTATNR   84 (291)
Q Consensus        72 ~d~G~y~C~~~~~   84 (291)
                      +|+|.|.|.+...
T Consensus        82 ~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          82 SDSASYICVVSDR   94 (114)
T ss_dssp             GGCSEEEEEEECS
T ss_pred             hhCcccceeeecC
Confidence            9999999998753

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.02  E-value=2.2e-09  Score=66.85  Aligned_cols=80  Identities=20%  Similarity=0.372  Sum_probs=54.4

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--Ceec----C-CCee---EeceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPL----A-GDRF---VMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~----~-~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+++.+|++++|.|.........+.||+.  ++..    . ....   .............+.|+|.+++.+|
T Consensus         3 ~vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   82 (108)
T d1jhll_           3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPED   82 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTC
T ss_pred             cEEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEecc
Confidence            356788889999999999999987655567999982  2211    0 0000   0011122233455789999999999


Q ss_pred             CeEEEEEEeC
Q psy14540         74 SGIYQCTATN   83 (291)
Q Consensus        74 ~G~y~C~~~~   83 (291)
                      +|.|.|....
T Consensus        83 sa~YyCA~~~   92 (108)
T d1jhll_          83 FAMYICQQHN   92 (108)
T ss_dssp             CSEEEEEECS
T ss_pred             ceEEEEeeCC
Confidence            9999997653

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=6.6e-10  Score=72.13  Aligned_cols=43  Identities=21%  Similarity=0.321  Sum_probs=37.2

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCC
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIG  244 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~  244 (291)
                      ..+|.|.+++.+|+|.|.|.+.+..+..+..+.|.|..|+.+.
T Consensus        80 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~~~  122 (126)
T d1pkoa_          80 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWI  122 (126)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTTTTS
T ss_pred             eEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCCEEe
Confidence            5689999999999999999999988888888899998766544

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.01  E-value=1.5e-09  Score=67.85  Aligned_cols=80  Identities=21%  Similarity=0.310  Sum_probs=54.3

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCee---c-C-CC---eeEeceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYP---L-A-GD---RFVMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~---~-~-~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+.+.+|++++|.|.........+.||+  .++.   + . ..   ......+........+.|.|.+++.+|
T Consensus         3 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (109)
T d1mqkl_           3 ELTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPED   82 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccC
Confidence            35677899999999999999998765556699998  2221   1 1 00   000111122223445789999999999


Q ss_pred             CeEEEEEEeC
Q psy14540         74 SGIYQCTATN   83 (291)
Q Consensus        74 ~G~y~C~~~~   83 (291)
                      +|.|.|.+..
T Consensus        83 Sa~YyCA~~~   92 (109)
T d1mqkl_          83 FGSYYCQHHY   92 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CeeEEEeeeC
Confidence            9999998763

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.6e-10  Score=73.90  Aligned_cols=94  Identities=17%  Similarity=0.223  Sum_probs=59.4

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCC----CCeeEEEECCeecC-C---------CeeE--------eceEE--eeccc
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDGYPLA-G---------DRFV--------MGQYM--SLHGD   59 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~-~---------~~~~--------~~~~~--~~~~~   59 (291)
                      .++.+...+.+.+|++++|.|.+...+    ...+.|++...... .         ....        .....  .....
T Consensus         6 ~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   85 (124)
T d1eaja_           6 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKS   85 (124)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGG
T ss_pred             EEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCC
Confidence            344444557889999999999986422    23589987321110 0         0000        00000  01122


Q ss_pred             eEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540         60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY   97 (291)
Q Consensus        60 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~   97 (291)
                      ..++|+|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        86 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          86 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            34679999999999999999999877777777777775

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=99.00  E-value=1.7e-09  Score=67.57  Aligned_cols=79  Identities=22%  Similarity=0.310  Sum_probs=53.9

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----CCee---EeceEEeeccceEEEEEEeecCCCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----GDRF---VMGQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      +++.|..+.+.+|++|+|.|.........+.||+.  ++...     ....   .............+.|+|.+++.+|+
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS   83 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD   83 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence            45778889999999999999987655557999972  22110     0000   01111122234458899999999999


Q ss_pred             eEEEEEEeC
Q psy14540         75 GIYQCTATN   83 (291)
Q Consensus        75 G~y~C~~~~   83 (291)
                      |.|.|....
T Consensus        84 a~YyCa~~~   92 (107)
T d1kcvl1          84 ADYYCGQSY   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEEecC
Confidence            999998753

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.99  E-value=1.4e-09  Score=67.75  Aligned_cols=79  Identities=20%  Similarity=0.330  Sum_probs=54.2

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----CCeeE---eceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----GDRFV---MGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+++.+|++|+|.|.........+.||+.  |+...     .....   ............+.|+|.+++.+|
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCc
Confidence            467889999999999999999988655668999982  22110     00000   001111223345789999999999


Q ss_pred             CeEEEEEEe
Q psy14540         74 SGIYQCTAT   82 (291)
Q Consensus        74 ~G~y~C~~~   82 (291)
                      +|.|.|...
T Consensus        83 sA~YyCa~~   91 (107)
T d1tjgl1          83 FATYYCQQL   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             CceEEEEEC
Confidence            999999765

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.99  E-value=1.4e-09  Score=67.74  Aligned_cols=79  Identities=19%  Similarity=0.233  Sum_probs=53.1

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-----CC---eeEeceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-----GD---RFVMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-----~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+.+.+|++++|.|.........+.||+  .|+...     ..   .....++........+.|.|.+++.+|
T Consensus         3 ~ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~D   82 (107)
T d1mexl1           3 VMTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSED   82 (107)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheec
Confidence            35677888899999999999998765455799997  222110     00   000011112223345889999999999


Q ss_pred             CeEEEEEEe
Q psy14540         74 SGIYQCTAT   82 (291)
Q Consensus        74 ~G~y~C~~~   82 (291)
                      ++.|.|...
T Consensus        83 sA~YyCa~~   91 (107)
T d1mexl1          83 LAEYFCQQY   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             ceeEEEeEC
Confidence            999999865

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.98  E-value=2.2e-09  Score=66.89  Aligned_cols=80  Identities=21%  Similarity=0.292  Sum_probs=53.5

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC----CCee----EeceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA----GDRF----VMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~----~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+.+.+|++|+|.|.........+.||+.  +....    ....    ....+........+.|.|.+++.+|
T Consensus         3 ~~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~D   82 (107)
T d1d5il1           3 KMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CEEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcC
Confidence            355778889999999999999987655567899972  22110    0000    0011111222344789999999999


Q ss_pred             CeEEEEEEeC
Q psy14540         74 SGIYQCTATN   83 (291)
Q Consensus        74 ~G~y~C~~~~   83 (291)
                      +|.|.|....
T Consensus        83 sa~YyCa~~~   92 (107)
T d1d5il1          83 MGIYYCLQYD   92 (107)
T ss_dssp             CEEEEEEECS
T ss_pred             CEEEEeeecc
Confidence            9999998653

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.98  E-value=2.1e-09  Score=67.83  Aligned_cols=76  Identities=26%  Similarity=0.423  Sum_probs=54.7

Q ss_pred             cceeecceeeeecCCcEEEEEEecC--CCCCeeEEEE--CCee----cC-CCeeEeceEEeeccceEEEEEEeecCCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKL--DGYP----LA-GDRFVMGQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~--~~~~----~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      .+.+.|..+.+.+|++++|.|.+.+  .....+.||+  .+..    +. ..++..   ....+...+.|+|.+++.+|+
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~---~~~~~~~~~~L~I~~l~~~Ds   78 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVE---TVNKGSKSFSLRISDLRVEDS   78 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEE---EEETTTTEEEEEECSCCGGGC
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccc---eeECCCCceeeeecccccCCc
Confidence            4678899999999999999999865  3445699997  3322    11 222222   122344567899999999999


Q ss_pred             eEEEEEEe
Q psy14540         75 GIYQCTAT   82 (291)
Q Consensus        75 G~y~C~~~   82 (291)
                      |.|.|.+.
T Consensus        79 a~YyCa~~   86 (113)
T d1vesa_          79 GTYKCQAF   86 (113)
T ss_dssp             EEEEEEEE
T ss_pred             ceEeeeee
Confidence            99999975

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=8e-09  Score=65.19  Aligned_cols=79  Identities=23%  Similarity=0.340  Sum_probs=53.2

Q ss_pred             ceeecceeeeecCCcEEEEEEecC-CCCCeeEEEE--CCee---c-C--CCeeEe---ceEE--eeccceEEEEEEeecC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKL--DGYP---L-A--GDRFVM---GQYM--SLHGDVISHVNISSVR   70 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~--~~~~---~-~--~~~~~~---~~~~--~~~~~~~~~l~i~~~~   70 (291)
                      +++.|..+.+.+|++++|.|.+.. .....+.||+  .+..   + .  ......   .++.  .......+.|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            577899999999999999999865 3345689998  2221   1 0  111000   0111  1122345789999999


Q ss_pred             CCCCeEEEEEEeC
Q psy14540         71 VEDSGIYQCTATN   83 (291)
Q Consensus        71 ~~d~G~y~C~~~~   83 (291)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          82 RNDSGIYLCGAIS   94 (114)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCCeEEEEEEEe
Confidence            9999999998763

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.97  E-value=2.2e-09  Score=66.73  Aligned_cols=78  Identities=15%  Similarity=0.318  Sum_probs=53.1

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--Cee---cC--CCee---EeceEEeeccceEEEEEEeecCCCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYP---LA--GDRF---VMGQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~---~~--~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      +++.|..+.+.+|++++|.|.........+.||+.  ++.   +.  ....   ...++........+.|.|.+++.+|+
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCC
Confidence            45778899999999999999987655556999983  221   10  0000   00111122234457899999999999


Q ss_pred             eEEEEEEe
Q psy14540         75 GIYQCTAT   82 (291)
Q Consensus        75 G~y~C~~~   82 (291)
                      |.|.|...
T Consensus        83 a~YyCa~~   90 (106)
T d1op3k1          83 ATYHCQHY   90 (106)
T ss_dssp             SEEEEEEE
T ss_pred             CcEeeeeC
Confidence            99999865

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.96  E-value=3.5e-09  Score=66.38  Aligned_cols=77  Identities=21%  Similarity=0.370  Sum_probs=54.4

Q ss_pred             ceeecceeeeecCCcEEEEEEecC--CCCCeeEEEEC--Cee----cC-CCeeEeceEEeeccceEEEEEEeecCCCCCe
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLD--GYP----LA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSG   75 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~--~~~----~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   75 (291)
                      +.+.|..+++.+|++++|.|...+  .....+.||+.  |+.    +. ..++..   ....+...+.|+|.+++.+|+|
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~---~~~~~~~~~~L~I~~l~~~Dsa   78 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVE---TVNSGSKSFSLRINDLTVEDGG   78 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEE---EEETTTTEEEEEECSCCGGGCE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEee---EEecCCceeeeEecCCcCccCE
Confidence            567888899999999999998864  34567999982  221    11 222222   1123344578999999999999


Q ss_pred             EEEEEEeCC
Q psy14540         76 IYQCTATNR   84 (291)
Q Consensus        76 ~y~C~~~~~   84 (291)
                      .|.|.+...
T Consensus        79 ~YyCA~~~~   87 (112)
T d1sq2n_          79 TYRCGLGVA   87 (112)
T ss_dssp             EEEEEECBT
T ss_pred             EEeEEEecC
Confidence            999987643

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.95  E-value=1.7e-09  Score=68.21  Aligned_cols=78  Identities=18%  Similarity=0.191  Sum_probs=52.9

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-------CC-eeEec--eEEeeccceEEEEEEeecCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-------GD-RFVMG--QYMSLHGDVISHVNISSVRVE   72 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-------~~-~~~~~--~~~~~~~~~~~~l~i~~~~~~   72 (291)
                      +.+.|..+.+.+|++++|.|.........+.||+.  |....       .. .....  ..........+.|.|.+++.+
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPG   81 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTT
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCC
Confidence            56678888999999999999987544456999983  22211       00 00011  111122345588999999999


Q ss_pred             CCeEEEEEEe
Q psy14540         73 DSGIYQCTAT   82 (291)
Q Consensus        73 d~G~y~C~~~   82 (291)
                      |+|.|.|.+.
T Consensus        82 Dsa~YyCa~~   91 (110)
T d1u3ha1          82 DSATYFCAAS   91 (110)
T ss_dssp             SCSEEEECCE
T ss_pred             CceeEeeeec
Confidence            9999999865

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.95  E-value=3.5e-09  Score=66.47  Aligned_cols=74  Identities=12%  Similarity=0.200  Sum_probs=49.7

Q ss_pred             cceeeeecCCcEEEEEEecC-CCCCeeEEEE--CCeecC-------CC-eeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          9 FIQQTLQPGPPVSLKCIATG-NPTPHISWKL--DGYPLA-------GD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~--~~~~~~-------~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      |..+.+.+|++++|.|.+.. .....+.||+  .++...       .. ...............+.|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            55789999999999999865 3344689998  232111       00 0011112222334568899999999999999


Q ss_pred             EEEEe
Q psy14540         78 QCTAT   82 (291)
Q Consensus        78 ~C~~~   82 (291)
                      .|.+.
T Consensus        85 yCa~~   89 (110)
T d2esvd1          85 YCIVV   89 (110)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99875

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.6e-09  Score=64.93  Aligned_cols=76  Identities=14%  Similarity=0.131  Sum_probs=54.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...|.. .|..|++|+|.|... .....+.|+|+|........     ........+.+.|.+++..|+|.|+|..
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~-----~~~~~~~~a~F~i~~v~~~~~G~Y~C~y   76 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRP-----KPPERINKVKFYIPDMNSRMAGQYSCIY   76 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECC-----SSCTTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEE-----ccCCCccEEEEEEeeeecCCCceEEEEe
Confidence            6888888866 578999999999875 44667999998864320000     0011223356889999999999999997


Q ss_pred             eCC
Q psy14540         82 TNR   84 (291)
Q Consensus        82 ~~~   84 (291)
                      .+.
T Consensus        77 ~~~   79 (95)
T d1olla1          77 RVG   79 (95)
T ss_dssp             EET
T ss_pred             CCC
Confidence            643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.95  E-value=5.9e-09  Score=66.28  Aligned_cols=80  Identities=19%  Similarity=0.351  Sum_probs=55.0

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC---------C----CeeEeceE-EeeccceEEEEEEe
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA---------G----DRFVMGQY-MSLHGDVISHVNIS   67 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~---------~----~~~~~~~~-~~~~~~~~~~l~i~   67 (291)
                      .+++.|....+.+|++++|.|...+.....+.||+  .|+.+.         .    .......+ ........+.|+|.
T Consensus         3 ~v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~   82 (118)
T d2ij0c1           3 VVSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVT   82 (118)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEEC
T ss_pred             cEEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccc
Confidence            46778888899999999999998765566799998  332111         0    00001111 11223445789999


Q ss_pred             ecCCCCCeEEEEEEeC
Q psy14540         68 SVRVEDSGIYQCTATN   83 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~   83 (291)
                      +++.+|+|.|.|....
T Consensus        83 ~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          83 SAHPEDSGFYVCSALA   98 (118)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccccccCceEEEEEec
Confidence            9999999999998764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=2.9e-09  Score=66.29  Aligned_cols=76  Identities=21%  Similarity=0.417  Sum_probs=50.4

Q ss_pred             eecceeeeecCCcEEEEEEecCCCCCeeEEEEC--Cee---cC--CCee---EeceEEeeccceEEEEEEeecCCCCCeE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYP---LA--GDRF---VMGQYMSLHGDVISHVNISSVRVEDSGI   76 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~---~~--~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~G~   76 (291)
                      ..|..+.+.+|++++|.|...+.....+.||+.  ++.   +.  ....   ....+........+.|.|.+++.+|+|.
T Consensus         5 tQp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1lk3l1           5 TQPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAI   84 (106)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCC
Confidence            345578999999999999997655567999972  221   11  0000   0111122223345789999999999999


Q ss_pred             EEEEEe
Q psy14540         77 YQCTAT   82 (291)
Q Consensus        77 y~C~~~   82 (291)
                      |.|...
T Consensus        85 YyCa~~   90 (106)
T d1lk3l1          85 YFCQQS   90 (106)
T ss_dssp             EEEEEC
T ss_pred             cccccc
Confidence            999765

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.95  E-value=3.5e-09  Score=66.30  Aligned_cols=80  Identities=19%  Similarity=0.284  Sum_probs=53.6

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--Ceec---C--CCee---EeceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPL---A--GDRF---VMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~---~--~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+.+.+|++++|.|...+.....+.||+.  ++..   .  ....   ....+........+.|+|.+++.+|
T Consensus         5 ~ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~D   84 (109)
T d1bwwa_           5 QMTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPED   84 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eEEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCc
Confidence            345678889999999999999987655567899982  2211   0  0000   0011111223345789999999999


Q ss_pred             CeEEEEEEeC
Q psy14540         74 SGIYQCTATN   83 (291)
Q Consensus        74 ~G~y~C~~~~   83 (291)
                      +|.|.|....
T Consensus        85 sa~YyCA~~~   94 (109)
T d1bwwa_          85 IATYYCQQYQ   94 (109)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEeecC
Confidence            9999998753

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.5e-09  Score=66.78  Aligned_cols=79  Identities=14%  Similarity=0.189  Sum_probs=52.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...|.. .|..|++|+|.|... .+...+.|+++|......   ............+.+.|.+++..|+|.|+|..
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~---~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y   81 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYRE---IGRRLKFWNETDPEFVIDHMDANKAGRYQCQY   81 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEE---CSEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCcee---ccccccCCCCceEEEEecCCCHHHCceEEEEE
Confidence            6888888765 588999999999875 456689999876422100   00000011122345789999999999999998


Q ss_pred             eCCC
Q psy14540         82 TNRV   85 (291)
Q Consensus        82 ~~~~   85 (291)
                      .+..
T Consensus        82 ~~~~   85 (99)
T d1ucta1          82 RIGH   85 (99)
T ss_dssp             EETT
T ss_pred             ECCC
Confidence            7544

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.93  E-value=3.3e-09  Score=65.78  Aligned_cols=77  Identities=21%  Similarity=0.338  Sum_probs=51.6

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----CCee---EeceEEeeccceEEEEEEeecCCCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----GDRF---VMGQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      +++.|..+++.+|++++|.|.... ....+.||+.  +....     ....   ....+........++|.|.+++.+|+
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA   81 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence            467889999999999999998754 3446899983  22110     0000   00111122233457899999999999


Q ss_pred             eEEEEEEe
Q psy14540         75 GIYQCTAT   82 (291)
Q Consensus        75 G~y~C~~~   82 (291)
                      |.|.|...
T Consensus        82 a~YyCa~~   89 (104)
T d1yqvl1          82 ATYYCQQW   89 (104)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEec
Confidence            99999764

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.93  E-value=3.6e-09  Score=67.11  Aligned_cols=81  Identities=27%  Similarity=0.406  Sum_probs=54.5

Q ss_pred             cceeecceeeeecCCcEEEEEEecC-CCCCeeEEEE--CCeecC------CCeeEe-----ceE--EeeccceEEEEEEe
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKL--DGYPLA------GDRFVM-----GQY--MSLHGDVISHVNIS   67 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~--~~~~~~------~~~~~~-----~~~--~~~~~~~~~~l~i~   67 (291)
                      ++++.|..+.+.+|++++|.|.+.. .....+.||+  .++...      ......     .++  ........++|+|.
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~   81 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVIS   81 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEES
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeec
Confidence            4677888899999999999999864 3456799997  222111      110000     011  11223445789999


Q ss_pred             ecCCCCCeEEEEEEeCC
Q psy14540         68 SVRVEDSGIYQCTATNR   84 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~~   84 (291)
                      +++.+|+|.|.|.+...
T Consensus        82 ~~~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          82 PVRTEDSATYYCAFTLP   98 (116)
T ss_dssp             SCCGGGCEEEEEEEECT
T ss_pred             CccccccccceeeEecC
Confidence            99999999999987643

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.92  E-value=1.5e-09  Score=67.35  Aligned_cols=77  Identities=22%  Similarity=0.320  Sum_probs=50.7

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC--------CCeeEeceEEeeccceEEEEEEeecCCCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA--------GDRFVMGQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      +++ |..+++.+|++++|.|.........+.||+.  |....        .................+.|.|.+++.+|+
T Consensus         2 ltQ-p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   80 (103)
T d8faba1           2 LTQ-PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDE   80 (103)
T ss_dssp             BBC-CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGC
T ss_pred             CCC-CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHC
Confidence            344 4478899999999999987644456999982  22110        000011112222334458899999999999


Q ss_pred             eEEEEEEe
Q psy14540         75 GIYQCTAT   82 (291)
Q Consensus        75 G~y~C~~~   82 (291)
                      |.|.|.+.
T Consensus        81 a~YyCA~~   88 (103)
T d8faba1          81 ADYYCQAW   88 (103)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEeeec
Confidence            99999865

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.92  E-value=9e-10  Score=68.69  Aligned_cols=79  Identities=16%  Similarity=0.277  Sum_probs=53.0

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-----CCeeE---eceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-----GDRFV---MGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-----~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+++.+|++++|.|.........+.||+  .|+...     .....   ...+........++|.|.+++.+|
T Consensus         3 ~ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~D   82 (107)
T d3cx5k1           3 ELTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPED   82 (107)
T ss_dssp             CEEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCC
T ss_pred             CEECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecC
Confidence            35677888999999999999998765556799998  222110     00000   011111122345789999999999


Q ss_pred             CeEEEEEEe
Q psy14540         74 SGIYQCTAT   82 (291)
Q Consensus        74 ~G~y~C~~~   82 (291)
                      +|.|.|...
T Consensus        83 sa~YyCa~~   91 (107)
T d3cx5k1          83 IATYFCQHH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             CCcEEeeeC
Confidence            999999764

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.4e-08  Score=63.50  Aligned_cols=76  Identities=16%  Similarity=0.189  Sum_probs=48.8

Q ss_pred             cceeeeecCCcEEEEEEecCC--CCCeeEEEEC--Cee---c-C-----CCeeEece-EEeeccceEEEEEEeecCCCCC
Q psy14540          9 FIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYP---L-A-----GDRFVMGQ-YMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~---~-~-----~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      +..+.+.+|++++|.|.+...  ....+.|+|.  +..   + .     ........ .........++|.|.+++.+|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            344678899999999997642  2345789982  211   1 0     00000011 1122345668999999999999


Q ss_pred             eEEEEEEeCC
Q psy14540         75 GIYQCTATNR   84 (291)
Q Consensus        75 G~y~C~~~~~   84 (291)
                      |.|.|.+...
T Consensus        83 G~Y~C~v~~~   92 (108)
T d1hkfa_          83 GHYWCRIYRP   92 (108)
T ss_dssp             EEEEEEEECT
T ss_pred             EEEEEEEecC
Confidence            9999998743

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.92  E-value=5.5e-09  Score=66.29  Aligned_cols=81  Identities=12%  Similarity=0.217  Sum_probs=53.8

Q ss_pred             cceeecceeeeecCCcEEEEEEecC-CCCCeeEEEEC--CeecC---------CC-eeEec-eEEeeccceEEEEEEeec
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLD--GYPLA---------GD-RFVMG-QYMSLHGDVISHVNISSV   69 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~--~~~~~---------~~-~~~~~-~~~~~~~~~~~~l~i~~~   69 (291)
                      ++++.|..+.+.+|++|+|.|.+.. .....+.||+.  ++.+.         .. ..... ..........+.|.|.++
T Consensus         1 ~VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (115)
T d1fo0a_           1 KVTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITAT   80 (115)
T ss_dssp             CEECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSC
T ss_pred             CeEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCC
Confidence            3567788899999999999999864 34456899982  22110         00 00000 111122334578999999


Q ss_pred             CCCCCeEEEEEEeCC
Q psy14540         70 RVEDSGIYQCTATNR   84 (291)
Q Consensus        70 ~~~d~G~y~C~~~~~   84 (291)
                      +.+|+|.|.|.+...
T Consensus        81 ~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          81 QIEDSAVYFCAMRGD   95 (115)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             CccccccccceeecC
Confidence            999999999997643

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=6.8e-10  Score=68.25  Aligned_cols=72  Identities=24%  Similarity=0.332  Sum_probs=47.6

Q ss_pred             eeeecCCcEEEEEEecCCCCCeeEEEECCee--cC--CCe-------eEece--EEeeccceEEEEEEeecCCCCCeEEE
Q psy14540         12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYP--LA--GDR-------FVMGQ--YMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~~--~~~-------~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      +...+|++++|+|.........+.|++....  +.  ...       +....  .......+.++|+|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            4568999999999988766678999985331  11  000       00000  00111233467999999999999999


Q ss_pred             EEEeC
Q psy14540         79 CTATN   83 (291)
Q Consensus        79 C~~~~   83 (291)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99964

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.91  E-value=3.2e-09  Score=66.41  Aligned_cols=78  Identities=22%  Similarity=0.319  Sum_probs=51.9

Q ss_pred             ceeecceeeeecCCcEEEEEEecCC-CCCeeEEEEC--CeecC--------CCeeEeceEEeeccceEEEEEEeecCCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLD--GYPLA--------GDRFVMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      +++.|..+.+.+|++++|.|..... ....+.||+.  ++...        .................+.|+|.+++.+|
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~D   83 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPED   83 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecc
Confidence            4567888999999999999997643 3446899983  32110        00000111112223345789999999999


Q ss_pred             CeEEEEEEe
Q psy14540         74 SGIYQCTAT   82 (291)
Q Consensus        74 ~G~y~C~~~   82 (291)
                      +|.|.|...
T Consensus        84 sa~YyCa~~   92 (108)
T d2fx7l1          84 FAVYYCQQY   92 (108)
T ss_dssp             CSEEEEEEC
T ss_pred             cEEEeeecC
Confidence            999999875

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=1.3e-09  Score=69.19  Aligned_cols=80  Identities=20%  Similarity=0.296  Sum_probs=53.5

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--Ceec---C-C-Cee---EeceEEeeccceEEEEEEeecCCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPL---A-G-DRF---VMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~---~-~-~~~---~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++++.|..+.+.+|++++|.|.........+.||+.  +...   . . ...   ....+........+.|.|.+++.+|
T Consensus         3 ~ltQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~D   82 (119)
T d1f3rb2           3 KLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPED   82 (119)
T ss_dssp             CSCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGG
T ss_pred             cEEccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCC
Confidence            356778888999999999999987644556999983  2211   1 0 000   0111112223345789999999999


Q ss_pred             CeEEEEEEeC
Q psy14540         74 SGIYQCTATN   83 (291)
Q Consensus        74 ~G~y~C~~~~   83 (291)
                      +|.|.|....
T Consensus        83 savYyCa~~~   92 (119)
T d1f3rb2          83 VATYFCYQYN   92 (119)
T ss_dssp             CSEEEEEEES
T ss_pred             CeEEEeeccC
Confidence            9999998653

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.90  E-value=6.6e-09  Score=65.23  Aligned_cols=77  Identities=21%  Similarity=0.357  Sum_probs=50.0

Q ss_pred             eeecceeeeecCCcEEEEEEecCC--CCCeeEEEEC--Cee---cC--C---CeeEeceEEeeccceEEEEEEeecCCCC
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYP---LA--G---DRFVMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~---~~--~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ++. ..+.+.+|++++|.|...+.  ....+.||+.  +..   +.  .   ................+.|.|.+++.+|
T Consensus         5 tQ~-ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (114)
T d2rhea_           5 TQP-PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESED   83 (114)
T ss_dssp             BCC-SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             ccC-CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCccc
Confidence            444 46899999999999998653  3456999983  221   10  0   0000111122223445789999999999


Q ss_pred             CeEEEEEEeC
Q psy14540         74 SGIYQCTATN   83 (291)
Q Consensus        74 ~G~y~C~~~~   83 (291)
                      ++.|.|....
T Consensus        84 sA~YyCA~~~   93 (114)
T d2rhea_          84 EADYYCAAWN   93 (114)
T ss_dssp             CEEEEEEEEE
T ss_pred             CceEEEeecC
Confidence            9999998763

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.90  E-value=2.3e-09  Score=67.78  Aligned_cols=81  Identities=17%  Similarity=0.225  Sum_probs=55.5

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-------C-CeeEece--EEeeccceEEEEEEeecCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-------G-DRFVMGQ--YMSLHGDVISHVNISSVRV   71 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-------~-~~~~~~~--~~~~~~~~~~~l~i~~~~~   71 (291)
                      .+.+.|..+.+.+|++++|.|.+.......+.|||  .++...       . .......  .........+.|.|.+++.
T Consensus         2 ~V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (113)
T d2bnqd1           2 EVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP   81 (113)
T ss_dssp             CEECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             CcEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence            46678888999999999999998765556799998  222110       1 1111111  1122234568899999999


Q ss_pred             CCCeEEEEEEeCC
Q psy14540         72 EDSGIYQCTATNR   84 (291)
Q Consensus        72 ~d~G~y~C~~~~~   84 (291)
                      +|+|.|.|.+...
T Consensus        82 ~Dsg~YyCa~~~~   94 (113)
T d2bnqd1          82 GDSATYLCAVRPT   94 (113)
T ss_dssp             GGCEEEEEEEEES
T ss_pred             CCCcEEeEeEecC
Confidence            9999999998643

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.90  E-value=3.2e-09  Score=67.25  Aligned_cols=77  Identities=22%  Similarity=0.301  Sum_probs=53.7

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-------------CCeeEeceEEeeccceEEEEEEee
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-------------GDRFVMGQYMSLHGDVISHVNISS   68 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~   68 (291)
                      .+++.|..+.+.+|++++|.|.........+.|||.  ++...             ..++..   ........+.|.|.+
T Consensus         3 ~V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~I~~   79 (115)
T d1lp9e1           3 SVTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHA---TLHKSSSSFHLQKSS   79 (115)
T ss_dssp             EEEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEE---CCBGGGTBCCEEESS
T ss_pred             CEEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeee---eccCCCCeEEeeccc
Confidence            356778888999999999999987655667999983  22110             011111   112233456799999


Q ss_pred             cCCCCCeEEEEEEeC
Q psy14540         69 VRVEDSGIYQCTATN   83 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~   83 (291)
                      ++.+|+|.|.|.+..
T Consensus        80 ~~~~Dsg~YyCa~~~   94 (115)
T d1lp9e1          80 AQLSDSALYYCALFL   94 (115)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccccCccceEEEEc
Confidence            999999999998753

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=2.2e-09  Score=67.87  Aligned_cols=80  Identities=24%  Similarity=0.340  Sum_probs=53.7

Q ss_pred             cceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECC--eecC--------CC------eeEeceEEeeccceEEEEEE
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDG--YPLA--------GD------RFVMGQYMSLHGDVISHVNI   66 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~--~~~~--------~~------~~~~~~~~~~~~~~~~~l~i   66 (291)
                      ++.+.|...++.+|++|+|.|.+.. .....+.||+..  ....        ..      .....+.........+.|+|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            4678899999999999999999865 334569999821  1110        00      00001111122233578999


Q ss_pred             eecCCCCCeEEEEEEeC
Q psy14540         67 SSVRVEDSGIYQCTATN   83 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~   83 (291)
                      .+++.+|+|.|.|.+..
T Consensus        82 ~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          82 SDFRRENEGYYFCSALS   98 (114)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCCCEEEeEeEcC
Confidence            99999999999999763

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.90  E-value=3.1e-09  Score=66.17  Aligned_cols=76  Identities=14%  Similarity=0.282  Sum_probs=50.3

Q ss_pred             ecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC--------CCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA--------GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      .|..+++.+|++++|.|.........+.||+.  ++...        .................+.|.|.+++.+|+|.|
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavY   85 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADY   85 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEE
Confidence            45578899999999999976544457999972  22110        000001111222334457899999999999999


Q ss_pred             EEEEeC
Q psy14540         78 QCTATN   83 (291)
Q Consensus        78 ~C~~~~   83 (291)
                      .|....
T Consensus        86 yCA~~~   91 (109)
T d1w72l1          86 YCQVWD   91 (109)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            998763

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=2.7e-09  Score=68.41  Aligned_cols=93  Identities=16%  Similarity=0.246  Sum_probs=55.5

Q ss_pred             ceeecceeeeecCCcEEEEEEecC----CCCCeeEEEEC--CeecC-------CCeeEe------ceEEe---eccceEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATG----NPTPHISWKLD--GYPLA-------GDRFVM------GQYMS---LHGDVIS   62 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~----~~~~~v~W~~~--~~~~~-------~~~~~~------~~~~~---~~~~~~~   62 (291)
                      ++..|..+.+..|++++|.|.+..    .....+.|++.  +....       ......      ..+..   ......+
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   81 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDG   81 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBC
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEE
Confidence            456778889999999999999753    22447999872  11100       000000      00001   1122336


Q ss_pred             EEEEeecCCCCCeEEEEEEeCCCCc--eeeeeeEEEE
Q psy14540         63 HVNISSVRVEDSGIYQCTATNRVGS--QTHSADMRVY   97 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~~~~~--~~~~~~l~v~   97 (291)
                      +|+|.+++.+|+|.|.|.+.+..+.  ....+.|.|.
T Consensus        82 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            7999999999999999999865432  3344555554

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.89  E-value=9.5e-09  Score=64.60  Aligned_cols=80  Identities=19%  Similarity=0.206  Sum_probs=55.0

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC--------CCeeEeceE--EeeccceEEEEEEeecCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA--------GDRFVMGQY--MSLHGDVISHVNISSVRV   71 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~--------~~~~~~~~~--~~~~~~~~~~l~i~~~~~   71 (291)
                      ++.+.|..+.+.+|++++|.|.........+.||+  .|+...        .........  ........++|.|.+++.
T Consensus         2 ~v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (111)
T d1bd2d1           2 QVKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQP   81 (111)
T ss_dssp             CEECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             ceEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcc
Confidence            35677888899999999999998765556799998  232211        111111111  112334568999999999


Q ss_pred             CCCeEEEEEEeC
Q psy14540         72 EDSGIYQCTATN   83 (291)
Q Consensus        72 ~d~G~y~C~~~~   83 (291)
                      +|+|.|.|.+..
T Consensus        82 ~Dsa~YyCa~~~   93 (111)
T d1bd2d1          82 GDSAVYFCAAME   93 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             cccEEEEeeccC
Confidence            999999998763

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.5e-09  Score=67.14  Aligned_cols=82  Identities=18%  Similarity=0.318  Sum_probs=49.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCe-EE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG-IY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y   77 (291)
                      .|.|....   .+.+|+.++|.|.+.+ .|..  .+.|++++..+..................+.|.+.- +.+|.| .|
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~-~~~D~g~~l   79 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTP-VIEDIGKVL   79 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECC-CGGGTTCEE
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccC-ChHHCCcEE
Confidence            46665432   4889999999999986 6643  589999998765211111000001112234566654 445555 89


Q ss_pred             EEEEeCCCCc
Q psy14540         78 QCTATNRVGS   87 (291)
Q Consensus        78 ~C~~~~~~~~   87 (291)
                      +|++.+..+.
T Consensus        80 tC~a~~~~~~   89 (109)
T d1vcaa1          80 VCRAKLHIDE   89 (109)
T ss_dssp             EEEEEECSCC
T ss_pred             EEEEEcCcCC
Confidence            9999976543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.89  E-value=1.2e-08  Score=64.70  Aligned_cols=78  Identities=17%  Similarity=0.268  Sum_probs=52.5

Q ss_pred             ceeecceeeeecCCcEEEEEEecC-CCCCeeEEEEC-----CeecC-------CCeeE------ece--EEeeccceEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLD-----GYPLA-------GDRFV------MGQ--YMSLHGDVISH   63 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~-----~~~~~-------~~~~~------~~~--~~~~~~~~~~~   63 (291)
                      +++.|....+.+|++++|.|.+.+ .....+.||+.     ++.+.       .....      ...  .........+.
T Consensus         1 v~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   80 (115)
T d2atpb1           1 LIQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPF   80 (115)
T ss_dssp             CEEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCE
T ss_pred             CEeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEE
Confidence            467788899999999999999876 44567999973     22110       11100      001  11112334577


Q ss_pred             EEEeecCCCCCeEEEEEEe
Q psy14540         64 VNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~~   82 (291)
                      |+|.+++.+|+|.|.|.+.
T Consensus        81 L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          81 LSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EEECSCCGGGCEEEEEEEE
T ss_pred             EeecccCCCCCcEEEEeEc
Confidence            9999999999999999875

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.88  E-value=4.7e-09  Score=66.47  Aligned_cols=81  Identities=15%  Similarity=0.214  Sum_probs=53.4

Q ss_pred             cceeecceeeeecCCcEEEEEEecC-CCCCeeEEEE--CCeecC---------CCeeEe-c-eEEeeccceEEEEEEeec
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKL--DGYPLA---------GDRFVM-G-QYMSLHGDVISHVNISSV   69 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~--~~~~~~---------~~~~~~-~-~~~~~~~~~~~~l~i~~~   69 (291)
                      ++++.|..+.+.+|++|+|.|.... .....+.||+  .+....         ...... . ..........+.|.|.++
T Consensus         2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (114)
T d2ak4d1           2 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITAS   81 (114)
T ss_dssp             EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSC
T ss_pred             cEEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccc
Confidence            3567788889999999999998764 3345689998  222211         000000 0 111122334678999999


Q ss_pred             CCCCCeEEEEEEeCC
Q psy14540         70 RVEDSGIYQCTATNR   84 (291)
Q Consensus        70 ~~~d~G~y~C~~~~~   84 (291)
                      +.+|+|.|.|.+...
T Consensus        82 ~~~Dsg~YyCa~~~~   96 (114)
T d2ak4d1          82 QVVDSAVYFCALSGF   96 (114)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             ccccCCCceEeCCCC
Confidence            999999999987643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.87  E-value=1.7e-08  Score=63.56  Aligned_cols=78  Identities=17%  Similarity=0.302  Sum_probs=52.0

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC------CC------eeEeceE-EeeccceEEEEEEeec
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA------GD------RFVMGQY-MSLHGDVISHVNISSV   69 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~------~~------~~~~~~~-~~~~~~~~~~l~i~~~   69 (291)
                      +.+.|....+.+|++++|.|.... ....+.||+.  ++...      ..      ......+ ........+.|+|.++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   80 (112)
T d1kgce1           2 VSQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRT   80 (112)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSC
T ss_pred             eEECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCC
Confidence            567788889999999999998653 3457999982  22110      00      0000111 1122334578999999


Q ss_pred             CCCCCeEEEEEEeC
Q psy14540         70 RVEDSGIYQCTATN   83 (291)
Q Consensus        70 ~~~d~G~y~C~~~~   83 (291)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          81 QQEDSAVYLCASSL   94 (112)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             CcCCCEEEEEeeeC
Confidence            99999999998863

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.87  E-value=1.1e-08  Score=64.44  Aligned_cols=79  Identities=18%  Similarity=0.320  Sum_probs=51.6

Q ss_pred             cceeecceeeeecCCcEEEEEEecCC---CCCeeEEEEC--CeecC--------CCeeEeceEEeeccceEEEEEEeecC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLD--GYPLA--------GDRFVMGQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~   70 (291)
                      .+++ |..+.+.+|++++|.|...+.   ....+.||+.  ++...        .................+.|.|.+++
T Consensus         3 ~ltQ-P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~   81 (112)
T d1lgva1           3 ALTQ-PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQ   81 (112)
T ss_dssp             CBBC-CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCC
T ss_pred             CccC-CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCc
Confidence            4455 778899999999999998752   2345999982  22110        00000111112223345889999999


Q ss_pred             CCCCeEEEEEEeC
Q psy14540         71 VEDSGIYQCTATN   83 (291)
Q Consensus        71 ~~d~G~y~C~~~~   83 (291)
                      .+|+|.|.|....
T Consensus        82 ~~Dsa~YyCa~~~   94 (112)
T d1lgva1          82 AEDEADYYCSSYD   94 (112)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccCEEEEEeeec
Confidence            9999999998764

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.86  E-value=1.6e-08  Score=63.46  Aligned_cols=77  Identities=18%  Similarity=0.440  Sum_probs=51.2

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC------CCe------eEeceEEe-eccceEEEEEEeec
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA------GDR------FVMGQYMS-LHGDVISHVNISSV   69 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~------~~~------~~~~~~~~-~~~~~~~~l~i~~~   69 (291)
                      +.+.|..+.+.+|++++|.|...+ ....+.||+.  |+...      ...      .....+.. ..+...+.|+|.++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   80 (111)
T d2esve1           2 VTQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPA   80 (111)
T ss_dssp             CEEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSC
T ss_pred             cEECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCc
Confidence            567788899999999999998654 3457999972  32111      000      00111111 12234478999999


Q ss_pred             CCCCCeEEEEEEe
Q psy14540         70 RVEDSGIYQCTAT   82 (291)
Q Consensus        70 ~~~d~G~y~C~~~   82 (291)
                      +.+|+|.|.|...
T Consensus        81 ~~~Dsa~YyCa~~   93 (111)
T d2esve1          81 ELEDSGVYFCASS   93 (111)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCCceEEEeee
Confidence            9999999999865

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.86  E-value=8.1e-09  Score=64.82  Aligned_cols=79  Identities=15%  Similarity=0.284  Sum_probs=50.7

Q ss_pred             cceeecceeeeecCCcEEEEEEecCC--CCCeeEEEEC--CeecC--------CCeeEeceEEeeccceEEEEEEeecCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLA--------GDRFVMGQYMSLHGDVISHVNISSVRV   71 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~--------~~~~~~~~~~~~~~~~~~~l~i~~~~~   71 (291)
                      ++++ |..+.+.+|++++|.|...+.  ....+.||+.  ++...        .................+.|.|.+++.
T Consensus         3 vltQ-p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~   81 (111)
T d1rzfl1           3 ILTQ-PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQT   81 (111)
T ss_dssp             SBBC-CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceee-CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeecc
Confidence            3445 557899999999999988652  2445999972  22110        000001111112233457899999999


Q ss_pred             CCCeEEEEEEeC
Q psy14540         72 EDSGIYQCTATN   83 (291)
Q Consensus        72 ~d~G~y~C~~~~   83 (291)
                      +|+|.|.|....
T Consensus        82 ~Dsa~YyCA~~~   93 (111)
T d1rzfl1          82 GDEADYYCGTWD   93 (111)
T ss_dssp             GGCSEEEEEEEE
T ss_pred             ccCcceEEeecC
Confidence            999999998763

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.84  E-value=7.7e-09  Score=65.08  Aligned_cols=80  Identities=16%  Similarity=0.296  Sum_probs=51.8

Q ss_pred             cceeecceeeeecCCcEEEEEEecCC------CCCeeEEEEC--CeecC-----CCee---EeceEEeeccceEEEEEEe
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGN------PTPHISWKLD--GYPLA-----GDRF---VMGQYMSLHGDVISHVNIS   67 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~------~~~~v~W~~~--~~~~~-----~~~~---~~~~~~~~~~~~~~~l~i~   67 (291)
                      ++++.|..+.+.+|++++|.|.+.+.      ....+.||+.  |+...     ....   ...............|.|.
T Consensus         3 ~~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~   82 (113)
T d1q9ra1           3 VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTIT   82 (113)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEES
T ss_pred             CEEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEec
Confidence            35677888999999999999987631      1234999982  32111     0000   0011111223445789999


Q ss_pred             ecCCCCCeEEEEEEeC
Q psy14540         68 SVRVEDSGIYQCTATN   83 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~   83 (291)
                      +++.+|+|.|.|....
T Consensus        83 ~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          83 SVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccccCCCeEEEecccC
Confidence            9999999999998653

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.84  E-value=3.5e-08  Score=60.16  Aligned_cols=82  Identities=17%  Similarity=0.267  Sum_probs=53.1

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.+-|.. .+..|+.++|.|.+.+ .| ...|+|++||+.+..+...... ....+..........+...+.+.|+|
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~-~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSF-FVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCC-EECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeee-EECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            7888776544 4667899999999998 34 5779999999888744332221 11222222222233344556678999


Q ss_pred             EEeCCC
Q psy14540         80 TATNRV   85 (291)
Q Consensus        80 ~~~~~~   85 (291)
                      ++.+..
T Consensus        81 ~V~H~s   86 (100)
T d1muja1          81 KVEHWG   86 (100)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            999764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.84  E-value=3.8e-09  Score=66.92  Aligned_cols=79  Identities=15%  Similarity=0.213  Sum_probs=53.3

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC--------CCeeEe-ce--EEeeccceEEEEEEeecCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA--------GDRFVM-GQ--YMSLHGDVISHVNISSVRV   71 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~--------~~~~~~-~~--~~~~~~~~~~~l~i~~~~~   71 (291)
                      +++.|..+.+.+|++++|.|.........+.||+  .++...        ...... ..  .........+.|+|.+++.
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            5677888999999999999998765556799998  222110        011000 01  1111223346799999999


Q ss_pred             CCCeEEEEEEeC
Q psy14540         72 EDSGIYQCTATN   83 (291)
Q Consensus        72 ~d~G~y~C~~~~   83 (291)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (115)
T d1j8hd1          83 SDAAEYFCAVSE   94 (115)
T ss_dssp             GGCEEEEEEEES
T ss_pred             cCCccceeeecC
Confidence            999999999874

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.84  E-value=1.4e-08  Score=63.93  Aligned_cols=80  Identities=23%  Similarity=0.300  Sum_probs=53.9

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC------CCeeEec---eEEeeccceEEEEEEeecCCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA------GDRFVMG---QYMSLHGDVISHVNISSVRVE   72 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~------~~~~~~~---~~~~~~~~~~~~l~i~~~~~~   72 (291)
                      .+.+.|..+.+.+|++++|.|.... ....+.||+.  +....      .......   ..........+.|.|.+++.+
T Consensus         3 ~V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (113)
T d1h5ba_           3 QVEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLE   81 (113)
T ss_dssp             SEEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGG
T ss_pred             CeEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHh
Confidence            4577888999999999999999875 3457999982  22110      1111101   111122334578999999999


Q ss_pred             CCeEEEEEEeCC
Q psy14540         73 DSGIYQCTATNR   84 (291)
Q Consensus        73 d~G~y~C~~~~~   84 (291)
                      |+|.|.|.+...
T Consensus        82 Dsa~YyCa~~~~   93 (113)
T d1h5ba_          82 DSGTYFCAAEAS   93 (113)
T ss_dssp             GCEEEEEEEECS
T ss_pred             HCEEEEEEecCC
Confidence            999999987643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.84  E-value=1.8e-08  Score=63.10  Aligned_cols=80  Identities=19%  Similarity=0.311  Sum_probs=51.9

Q ss_pred             cceeecceeeeecCCcEEEEEEecC----CCCCeeEEEEC--Ceec----C-CCeeE---eceEEeeccceEEEEEEeec
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATG----NPTPHISWKLD--GYPL----A-GDRFV---MGQYMSLHGDVISHVNISSV   69 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~----~~~~~v~W~~~--~~~~----~-~~~~~---~~~~~~~~~~~~~~l~i~~~   69 (291)
                      ++++.|..+.+.+|++|+|.|....    .....+.||+.  |...    . .....   ..++........+.|+|.++
T Consensus         3 ~ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~   82 (111)
T d2gsia1           3 VLTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPV   82 (111)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccc
Confidence            3457788899999999999998753    12234899983  3221    1 00000   01111222334578999999


Q ss_pred             CCCCCeEEEEEEeC
Q psy14540         70 RVEDSGIYQCTATN   83 (291)
Q Consensus        70 ~~~d~G~y~C~~~~   83 (291)
                      +.+|+|.|.|....
T Consensus        83 ~~~DsA~YyCa~~~   96 (111)
T d2gsia1          83 EEEDAATYYCSHIR   96 (111)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             cccCCceEEEEECC
Confidence            99999999998653

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.82  E-value=2e-08  Score=63.10  Aligned_cols=79  Identities=20%  Similarity=0.289  Sum_probs=51.9

Q ss_pred             cceeecceeeeecCCcEEEEEEecCC-----CCCeeEEEEC--CeecC-----CC---eeEeceEEeeccceEEEEEEee
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGN-----PTPHISWKLD--GYPLA-----GD---RFVMGQYMSLHGDVISHVNISS   68 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~--~~~~~-----~~---~~~~~~~~~~~~~~~~~l~i~~   68 (291)
                      ++++.|..+++.+|++++|.|...+.     ....+.||+.  |+...     ..   ......+........+.|+|.+
T Consensus         4 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~   83 (113)
T d1n4xl_           4 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   83 (113)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESS
T ss_pred             eEeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCC
Confidence            35677888999999999999997642     2346999982  22110     00   0001111122234557899999


Q ss_pred             cCCCCCeEEEEEEe
Q psy14540         69 VRVEDSGIYQCTAT   82 (291)
Q Consensus        69 ~~~~d~G~y~C~~~   82 (291)
                      ++.+|+|.|.|...
T Consensus        84 ~~~~DsavYyCa~~   97 (113)
T d1n4xl_          84 VEAEDLGIYYCFQG   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             CCcccCEEEEEEEC
Confidence            99999999999754

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.4e-09  Score=65.95  Aligned_cols=89  Identities=17%  Similarity=0.187  Sum_probs=56.0

Q ss_pred             eecCCCceEEEEEeeCCCCCc--eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPL--TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      .+.+|+.++|.|.+..++|..  .+.|++++..+......                ......+.++-             
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~----------------~~~~~~~~~~~-------------   62 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFL----------------EDADRKSLETK-------------   62 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECC----------------SCCSSCCCEEE-------------
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccc----------------cccccCCccee-------------
Confidence            467999999999998888854  68999998876321100                01111222211             


Q ss_pred             EEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-------CceeEEEEecCC
Q psy14540        195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-------NHSSNLRVNVPP  241 (291)
Q Consensus       195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-------~~~~~l~v~~~p  241 (291)
                             .+.|.+.....+|+..|+|+|++..+..       .....|.|+++|
T Consensus        63 -------~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          63 -------SLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             -------EEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC
T ss_pred             -------eEEEEccCChHHCCcEEEEEEEcCcCCccccccccceeEEeEEEeCC
Confidence                   3456666666777778999988776332       234457777665

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.82  E-value=1e-08  Score=64.30  Aligned_cols=79  Identities=16%  Similarity=0.218  Sum_probs=53.7

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-------C-Ce----eEeceEEeeccceEEEEEEee
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-------G-DR----FVMGQYMSLHGDVISHVNISS   68 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-------~-~~----~~~~~~~~~~~~~~~~l~i~~   68 (291)
                      ..+.+.|....+.+|++++|.|...+ ....+.||+  .|+...       . ..    ..............+.|+|.+
T Consensus         2 ~~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (110)
T d2aq2a1           2 AAVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILES   80 (110)
T ss_dssp             CSEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESS
T ss_pred             CCEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECC
Confidence            35778899999999999999999864 355799998  232110       0 00    000111112223458899999


Q ss_pred             cCCCCCeEEEEEEe
Q psy14540         69 VRVEDSGIYQCTAT   82 (291)
Q Consensus        69 ~~~~d~G~y~C~~~   82 (291)
                      ++.+|+|.|.|...
T Consensus        81 ~~~~Dsa~YyCa~~   94 (110)
T d2aq2a1          81 ATPSQTSVYFCASG   94 (110)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCHhhCEEEEEeeC
Confidence            99999999999875

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.81  E-value=3.9e-08  Score=61.96  Aligned_cols=92  Identities=16%  Similarity=0.263  Sum_probs=58.6

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-------CC-eeEec--eEEeeccceEEEEEEeecCCC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-------GD-RFVMG--QYMSLHGDVISHVNISSVRVE   72 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-------~~-~~~~~--~~~~~~~~~~~~l~i~~~~~~   72 (291)
                      +.+.|..+++.+|++++|.|...+ ....+.||+  .|+...       .. .....  ..........++|.|.+++.+
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   81 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPG   81 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcc
Confidence            567788899999999999999765 345799998  222110       11 11111  112223345688999999999


Q ss_pred             CCeEEEEEEeCCCCc--eeeeeeEEEE
Q psy14540         73 DSGIYQCTATNRVGS--QTHSADMRVY   97 (291)
Q Consensus        73 d~G~y~C~~~~~~~~--~~~~~~l~v~   97 (291)
                      |+|.|.|......+.  .-.-+.|+|.
T Consensus        82 Dsa~YyCa~~~~~~~~~FG~GT~LtV~  108 (115)
T d1ogad1          82 DTGLYLCAGAGSQGNLIFGKGTKLSVK  108 (115)
T ss_dssp             GCEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred             ceeeEcccccCCCCCcEECCCEEEEEe
Confidence            999999987643322  1223455554

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.3e-08  Score=60.59  Aligned_cols=73  Identities=25%  Similarity=0.338  Sum_probs=52.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...|.. .|..|++|+|.|.........+.|+|+|.........        ....+.+.|.+++..|+|.|+|..
T Consensus         5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~--------~~~~a~F~l~~v~~~~~G~Y~C~y   75 (96)
T d1ucta2           5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQS--------GEHPANFSLGPVDLNVSGIYRCYG   75 (96)
T ss_dssp             CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEE--------CSSSEEEECCSCCGGGCEEEEEEE
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcC--------CCcccEEEEeccccccCcEEEEEE
Confidence            6788887765 6999999999998643344578999998643322110        112255789999999999999987


Q ss_pred             eC
Q psy14540         82 TN   83 (291)
Q Consensus        82 ~~   83 (291)
                      ..
T Consensus        76 ~~   77 (96)
T d1ucta2          76 WY   77 (96)
T ss_dssp             EC
T ss_pred             Ec
Confidence            63

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=9.6e-09  Score=64.02  Aligned_cols=80  Identities=18%  Similarity=0.273  Sum_probs=50.7

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCC---CCeeEEEE--CCeecC-----CCee---EeceEEeeccceEEEEEEeec
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKL--DGYPLA-----GDRF---VMGQYMSLHGDVISHVNISSV   69 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~--~~~~~~-----~~~~---~~~~~~~~~~~~~~~l~i~~~   69 (291)
                      +.+++. ..+.+.+|++++|.|...+..   ...+.||+  .|+...     ....   ...++........+.|.|.++
T Consensus         2 ~~~tQ~-~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~   80 (110)
T d1oaql_           2 AVVTQE-SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGA   80 (110)
T ss_dssp             CCEEEC-SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESC
T ss_pred             CCEeeC-CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCC
Confidence            345554 468899999999999987422   23389997  232211     1000   011111122334588999999


Q ss_pred             CCCCCeEEEEEEeC
Q psy14540         70 RVEDSGIYQCTATN   83 (291)
Q Consensus        70 ~~~d~G~y~C~~~~   83 (291)
                      +.+|+|.|.|....
T Consensus        81 ~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          81 QTEDEAIYFCALWY   94 (110)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CccccEeEEEEccc
Confidence            99999999998653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.80  E-value=1.1e-08  Score=64.10  Aligned_cols=80  Identities=18%  Similarity=0.271  Sum_probs=52.6

Q ss_pred             cceeecceeeeecCCcEEEEEEecC----CCCCeeEEEE--CCeecC-----CCee---EeceEEeeccceEEEEEEeec
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATG----NPTPHISWKL--DGYPLA-----GDRF---VMGQYMSLHGDVISHVNISSV   69 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~----~~~~~v~W~~--~~~~~~-----~~~~---~~~~~~~~~~~~~~~l~i~~~   69 (291)
                      ++++.|..+.+.+|++++|.|....    .....+.||+  .|+...     ....   .............+.|.|.++
T Consensus         3 ~ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   82 (111)
T d1j05a_           3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (111)
T ss_dssp             CEEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSC
T ss_pred             CEEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccc
Confidence            3457788899999999999998753    2233499998  333211     0000   001112223345688999999


Q ss_pred             CCCCCeEEEEEEeC
Q psy14540         70 RVEDSGIYQCTATN   83 (291)
Q Consensus        70 ~~~d~G~y~C~~~~   83 (291)
                      +.+|+|.|.|....
T Consensus        83 ~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          83 EADDVATYYCQQTN   96 (111)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ccccCccEEEeecC
Confidence            99999999998753

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.80  E-value=2e-08  Score=62.96  Aligned_cols=78  Identities=22%  Similarity=0.356  Sum_probs=51.4

Q ss_pred             ceeecceeeeecCCcEEEEEEecCC-----CCCeeEEEEC--CeecC-----CCe---eEeceEEeeccceEEEEEEeec
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGN-----PTPHISWKLD--GYPLA-----GDR---FVMGQYMSLHGDVISHVNISSV   69 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~--~~~~~-----~~~---~~~~~~~~~~~~~~~~l~i~~~   69 (291)
                      +++.|..+.+.+|++|+|.|...+.     ....+.||+.  |+...     ...   ....+.........+.|.|.++
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~   83 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRV   83 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSC
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCc
Confidence            4566888899999999999987642     2456999972  22211     000   0001122223445688999999


Q ss_pred             CCCCCeEEEEEEe
Q psy14540         70 RVEDSGIYQCTAT   82 (291)
Q Consensus        70 ~~~d~G~y~C~~~   82 (291)
                      +.+|++.|.|...
T Consensus        84 ~~~DsAvYyCa~~   96 (112)
T d1mjul1          84 EAEDVGVYYCLQH   96 (112)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             cccCCceEEEEeC
Confidence            9999999999654

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.79  E-value=4.1e-09  Score=66.78  Aligned_cols=79  Identities=19%  Similarity=0.247  Sum_probs=52.7

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC--------CCeeEe---ceEEeeccceEEEEEEeecC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA--------GDRFVM---GQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~--------~~~~~~---~~~~~~~~~~~~~l~i~~~~   70 (291)
                      .+++.|..+.+.+|++++|.|.........+.||+  .++...        ......   ...........+.|+|.+++
T Consensus         2 sV~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1i9ea_           2 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVH   81 (115)
T ss_dssp             EEECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCC
T ss_pred             CEEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccc
Confidence            35677778999999999999998765556789997  332110        000000   01111222334779999999


Q ss_pred             CCCCeEEEEEEe
Q psy14540         71 VEDSGIYQCTAT   82 (291)
Q Consensus        71 ~~d~G~y~C~~~   82 (291)
                      .+|+|.|.|.+.
T Consensus        82 ~~Dsg~YyCa~~   93 (115)
T d1i9ea_          82 WSDSAVYFCAVS   93 (115)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccccceeccccc
Confidence            999999999875

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.79  E-value=3.6e-08  Score=62.14  Aligned_cols=78  Identities=19%  Similarity=0.258  Sum_probs=52.4

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC------CCeeE------eceEEeeccceEEEEEEeecC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA------GDRFV------MGQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~------~~~~~------~~~~~~~~~~~~~~l~i~~~~   70 (291)
                      +++.|..+.+.+|++++|.|...+ ....+.||+  .++...      .....      ............+.|+|.+++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (113)
T d2ntsp1           2 VTQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLE   80 (113)
T ss_dssp             CEEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCC
Confidence            467788899999999999999754 345799998  332211      00000      001111223345789999999


Q ss_pred             CCCCeEEEEEEeC
Q psy14540         71 VEDSGIYQCTATN   83 (291)
Q Consensus        71 ~~d~G~y~C~~~~   83 (291)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          81 LGDSALYLCASSL   93 (113)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cccceeeeeeeeC
Confidence            9999999998764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.79  E-value=1.8e-08  Score=63.42  Aligned_cols=77  Identities=16%  Similarity=0.168  Sum_probs=51.3

Q ss_pred             eecceeeeecCCcEEEEEEecCCC-CCeeEEEE--CCeecC------C-C-eeEeceEEeeccceEEEEEEeecCCCCCe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP-TPHISWKL--DGYPLA------G-D-RFVMGQYMSLHGDVISHVNISSVRVEDSG   75 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~--~~~~~~------~-~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   75 (291)
                      ..|..+.+.+|++|+|.|...+.. ...+.||+  .|+.+.      . . .................|+|.+++.+|+|
T Consensus         3 ~qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           3 TQPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAA   82 (112)
T ss_dssp             ECCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             ECCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccce
Confidence            356778899999999999987533 44599998  233221      0 0 00011222233445678999999999999


Q ss_pred             EEEEEEeC
Q psy14540         76 IYQCTATN   83 (291)
Q Consensus        76 ~y~C~~~~   83 (291)
                      .|.|.+..
T Consensus        83 ~YyCa~~~   90 (112)
T d1kgcd1          83 VYYCILPL   90 (112)
T ss_dssp             EEEEECCC
T ss_pred             eEeeeEec
Confidence            99998753

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.78  E-value=1.1e-08  Score=63.75  Aligned_cols=75  Identities=15%  Similarity=0.291  Sum_probs=49.5

Q ss_pred             ecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-----CC---eeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-----GD---RFVMGQYMSLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-----~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      .|..+.+.+|++++|.|.........+.||+  .|+.+.     ..   .....++........+.|.|.+++.+|+|.|
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Y   84 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceE
Confidence            3667889999999999988654445699998  232110     00   0000111122233457899999999999999


Q ss_pred             EEEEe
Q psy14540         78 QCTAT   82 (291)
Q Consensus        78 ~C~~~   82 (291)
                      .|...
T Consensus        85 yCA~~   89 (108)
T d1nfde1          85 YCLSS   89 (108)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99875

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=7.5e-09  Score=63.42  Aligned_cols=91  Identities=15%  Similarity=0.183  Sum_probs=53.7

Q ss_pred             ceeecCCCceEEEEEeeCCC-CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        115 SIKVHSGDRAGVQCLVTKGD-PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      .+....|++|+|.|...... ....|.|++++..+.....     ... .  .  .     ..+.+              
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~-----~~~-~--~--~-----~~~~~--------------   54 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKR-----KMK-P--F--L-----KSGAF--------------   54 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEET-----TSC-C--E--E-----SSTTE--------------
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEcc-----CCc-c--c--c-----CCCeE--------------
Confidence            35566899999999642222 2357999998765421100     000 0  0  0     00000              


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEEEEe
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNLRVN  238 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~v~  238 (291)
                          ....+.+|.|.+++.+|+|.|+|.+.+..|..  .+++.|.|.
T Consensus        55 ----~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          55 ----EILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             ----EECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             ----EECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence                01124578888888889999999888777654  556666664

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.77  E-value=2.4e-08  Score=62.92  Aligned_cols=79  Identities=15%  Similarity=0.232  Sum_probs=52.7

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-------CC-----eeEeceEEeeccceEEEEEEeec
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-------GD-----RFVMGQYMSLHGDVISHVNISSV   69 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-------~~-----~~~~~~~~~~~~~~~~~l~i~~~   69 (291)
                      ++.+.|..+.+.+|++++|.|.... ....+.||+  .|+.+.       ..     ...............+.|+|.++
T Consensus         2 ~V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   80 (113)
T d1j8he1           2 KVTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESA   80 (113)
T ss_dssp             CEEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSC
T ss_pred             EEEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccC
Confidence            3567788889999999999998753 345799998  232111       00     00011111222334477999999


Q ss_pred             CCCCCeEEEEEEeC
Q psy14540         70 RVEDSGIYQCTATN   83 (291)
Q Consensus        70 ~~~d~G~y~C~~~~   83 (291)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          81 STNQTSMYLCASSS   94 (113)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             ccCCcccEEeeEcc
Confidence            99999999998764

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.4e-08  Score=62.91  Aligned_cols=86  Identities=17%  Similarity=0.266  Sum_probs=55.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc---ceEEEEEEeecCCCCCeE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG---DVISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~   76 (291)
                      +|.+.+-+.......++.++|.|.+.+ .| ...|.|++||..+..............+   ...+.|.|....+.+...
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~   83 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDE   83 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGG
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCE
Confidence            576644343344456788999999987 44 5789999999987744332221111122   234667777666666668


Q ss_pred             EEEEEeCCCCc
Q psy14540         77 YQCTATNRVGS   87 (291)
Q Consensus        77 y~C~~~~~~~~   87 (291)
                      |+|.+.+....
T Consensus        84 ytC~V~H~~l~   94 (105)
T d1fp5a2          84 FICRAVHEAAS   94 (105)
T ss_dssp             EEEEEECTTST
T ss_pred             EEEEEEECCCC
Confidence            99999976543

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.76  E-value=1.4e-08  Score=63.88  Aligned_cols=80  Identities=20%  Similarity=0.346  Sum_probs=53.3

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC------C-CeeEe----ceE-EeeccceEEEEEEee
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA------G-DRFVM----GQY-MSLHGDVISHVNISS   68 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~------~-~~~~~----~~~-~~~~~~~~~~l~i~~   68 (291)
                      +.+++.|..+.+.+|++++|.|.... ....+.||+.  |+.+.      . .....    ..+ ........+.|+|.+
T Consensus         2 ~~VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (113)
T d1nfdb1           2 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   80 (113)
T ss_dssp             CSCEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCS
T ss_pred             CCEEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecc
Confidence            56788899999999999999998654 3457999983  22111      0 00000    011 111122347899999


Q ss_pred             cCCCCCeEEEEEEeC
Q psy14540         69 VRVEDSGIYQCTATN   83 (291)
Q Consensus        69 ~~~~d~G~y~C~~~~   83 (291)
                      ++.+|+|.|.|....
T Consensus        81 ~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          81 LELEDSAMYFCASSL   95 (113)
T ss_dssp             CCGGGCEEECEEEES
T ss_pred             cCcCCceeEEEEeec
Confidence            999999999998753

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.76  E-value=3.4e-08  Score=61.81  Aligned_cols=78  Identities=22%  Similarity=0.348  Sum_probs=50.6

Q ss_pred             ceeecceeeeecCCcEEEEEEecC-----CCCCeeEEEEC--CeecC----C-Ce---eEeceEEeeccceEEEEEEeec
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATG-----NPTPHISWKLD--GYPLA----G-DR---FVMGQYMSLHGDVISHVNISSV   69 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~-----~~~~~v~W~~~--~~~~~----~-~~---~~~~~~~~~~~~~~~~l~i~~~   69 (291)
                      +++.|..+.+.+|++|+|.|....     .....+.||+.  |+...    . ..   .....+........+.|.|.++
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~   83 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV   83 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc
Confidence            457788899999999999998653     12345999972  22211    0 00   0001111122334578999999


Q ss_pred             CCCCCeEEEEEEe
Q psy14540         70 RVEDSGIYQCTAT   82 (291)
Q Consensus        70 ~~~d~G~y~C~~~   82 (291)
                      +.+|+|.|.|...
T Consensus        84 ~~eDsAvYYC~~~   96 (112)
T d1ncwl1          84 EAEDLGVYYCWQG   96 (112)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcCEeEEEEcC
Confidence            9999999999654

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=7.1e-08  Score=58.06  Aligned_cols=80  Identities=15%  Similarity=0.231  Sum_probs=49.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.+..    -..++.++|.|.+.+ .| ...++|++||+.+..............+..........+...+...|+|
T Consensus         4 pP~V~v~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC   79 (94)
T d1de4a1           4 PPLVKVTH----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTC   79 (94)
T ss_dssp             CCEEEEEE----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEE
T ss_pred             CCEEEEEE----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEE
Confidence            56555422    235678999999998 44 5689999999988633222222222233333333334455566678999


Q ss_pred             EEeCCC
Q psy14540         80 TATNRV   85 (291)
Q Consensus        80 ~~~~~~   85 (291)
                      .+.+..
T Consensus        80 ~V~H~s   85 (94)
T d1de4a1          80 QVEHPG   85 (94)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            999764

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.3e-08  Score=63.04  Aligned_cols=74  Identities=26%  Similarity=0.446  Sum_probs=48.1

Q ss_pred             eeeeecCCcEEEEEEecC--CCCCeeEEEEC--Ceec---C--C------CeeEeceE--EeeccceEEEEEEeecCCCC
Q psy14540         11 QQTLQPGPPVSLKCIATG--NPTPHISWKLD--GYPL---A--G------DRFVMGQY--MSLHGDVISHVNISSVRVED   73 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~--~~~~---~--~------~~~~~~~~--~~~~~~~~~~l~i~~~~~~d   73 (291)
                      ...+.+|++++|.|.+.+  .....+.|+|.  +...   .  .      ......+.  ........++|+|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            367889999999999864  33456899983  2211   0  0      00111111  11234456889999999999


Q ss_pred             CeEEEEEEeCC
Q psy14540         74 SGIYQCTATNR   84 (291)
Q Consensus        74 ~G~y~C~~~~~   84 (291)
                      +|.|.|.+...
T Consensus        88 sg~Y~Cav~~~   98 (113)
T d1smoa_          88 SGLYQCVIYQP   98 (113)
T ss_dssp             CEEEEEEECCT
T ss_pred             CceEEEEEECC
Confidence            99999998643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.73  E-value=3e-08  Score=62.07  Aligned_cols=80  Identities=16%  Similarity=0.240  Sum_probs=53.9

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC--------CCeeEeceEEe--eccceEEEEEEeecCC
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA--------GDRFVMGQYMS--LHGDVISHVNISSVRV   71 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~--------~~~~~~~~~~~--~~~~~~~~l~i~~~~~   71 (291)
                      .+++.|..+.+.+|++++|.|.........+.||+  .|+...        ........+..  ......+.|.|.+++.
T Consensus         2 sVtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~   81 (110)
T d1ac6a_           2 SVTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQE   81 (110)
T ss_dssp             EEEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECG
T ss_pred             ceEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCc
Confidence            36778888999999999999987654455799998  232211        11111111111  1223357899999999


Q ss_pred             CCCeEEEEEEeC
Q psy14540         72 EDSGIYQCTATN   83 (291)
Q Consensus        72 ~d~G~y~C~~~~   83 (291)
                      +|+|.|.|.+..
T Consensus        82 ~Dsa~YyCA~~~   93 (110)
T d1ac6a_          82 SDSAVYYCALSG   93 (110)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             CCCcccceeecC
Confidence            999999998763

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.73  E-value=8e-08  Score=58.58  Aligned_cols=74  Identities=15%  Similarity=0.179  Sum_probs=51.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...|.. .|..|++|+|.|... .+...+.|+|+|.......  ..   .......+.+.|..++..|+|.|+|..
T Consensus         6 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~--~~---~~~~~~~~~f~~~~~~~~~~G~Y~C~y   78 (99)
T d1nkra2           6 KPSLSAQPGP-TVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRL--PA---GPKVNGTFQADFPLGPATHGGTYRCFG   78 (99)
T ss_dssp             CCEEEEESCS-EECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEE--EC---EEEETTEEEEEEEEEECCSCEEEEEEE
T ss_pred             CCEEEEeCCC-cccCCCeEEEEECCC-CCccEEEEEECCCccccEE--Ec---cccCCccEEEEEeccccccCEEEEEEe
Confidence            6888888865 689999999999876 4566799999986433111  10   011122344667788888999999976


Q ss_pred             e
Q psy14540         82 T   82 (291)
Q Consensus        82 ~   82 (291)
                      .
T Consensus        79 ~   79 (99)
T d1nkra2          79 S   79 (99)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.70  E-value=3.4e-08  Score=62.32  Aligned_cols=78  Identities=17%  Similarity=0.235  Sum_probs=51.6

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-------CCeeEe-----ceEEeeccceEEEEEEeecC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-------GDRFVM-----GQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-------~~~~~~-----~~~~~~~~~~~~~l~i~~~~   70 (291)
                      +++.|..+.+.+|++++|.|.... ....+.||+  .++.+.       ......     ...........+.|.|.+++
T Consensus         2 VtQsP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (114)
T d1ogae1           2 ITQSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   80 (114)
T ss_dssp             EECSCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             cEEcCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence            456788889999999999999863 455799998  222110       000000     01111122334679999999


Q ss_pred             CCCCeEEEEEEeC
Q psy14540         71 VEDSGIYQCTATN   83 (291)
Q Consensus        71 ~~d~G~y~C~~~~   83 (291)
                      .+|+|.|.|....
T Consensus        81 ~~DSa~YyCa~~~   93 (114)
T d1ogae1          81 KNPTAFYLCASSS   93 (114)
T ss_dssp             SCCCEEEEEEEES
T ss_pred             cCCceeEEEeecc
Confidence            9999999998764

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=1.3e-07  Score=53.31  Aligned_cols=86  Identities=15%  Similarity=0.342  Sum_probs=57.0

Q ss_pred             ceeeeecCCcEEEEEEecC-CCCCeeEEEE-CCe---ecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540         10 IQQTLQPGPPVSLKCIATG-NPTPHISWKL-DGY---PLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~-~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      ...++..|+.+.|.|.+.. ...|.++|.| +|.   .+.........-........+.|.+..+-.+|.|.|+|.+...
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~   90 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN   90 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence            4457899999999999986 5678999998 443   2332211111112223335688999999999999999998754


Q ss_pred             CCc-eeeeeeEE
Q psy14540         85 VGS-QTHSADMR   95 (291)
Q Consensus        85 ~~~-~~~~~~l~   95 (291)
                      .+. .+.++.+.
T Consensus        91 s~vieSHSvti~  102 (104)
T d1xaua_          91 SQVINSHSVTIH  102 (104)
T ss_dssp             TEEEECCCEEEE
T ss_pred             hhheecceEEEE
Confidence            443 33444443

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.5e-07  Score=56.89  Aligned_cols=80  Identities=18%  Similarity=0.292  Sum_probs=51.6

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGI   76 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~   76 (291)
                      ++|.|.+..    ...|+.++|.|.+.+ .|.+.|.|+++|+.+.........  ...++   ..+.|.+.   ..+...
T Consensus         4 ~~P~V~~~~----~~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~--~~~~g~y~v~S~L~v~---~~~~~~   74 (95)
T d1dr9a2           4 PTPSISDFE----IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQ--DPETELYAVSSKLDFN---MTTNHS   74 (95)
T ss_dssp             CCCEEEEEE----CSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEE--CTTTCCEEEEEEEEEE---TTSCEE
T ss_pred             CCCEEEecc----cCCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEe--cCCCccEEEEEEEEcc---CCccce
Confidence            356655433    236788999999998 788899999999888744332211  11112   23455553   445679


Q ss_pred             EEEEEeCCCCcee
Q psy14540         77 YQCTATNRVGSQT   89 (291)
Q Consensus        77 y~C~~~~~~~~~~   89 (291)
                      |+|.+.+......
T Consensus        75 ~tC~V~h~~l~~~   87 (95)
T d1dr9a2          75 FMCLIKYGHLRVN   87 (95)
T ss_dssp             EEEEEEETTCCEE
T ss_pred             EEEEEEecCCCCc
Confidence            9999987665443

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.3e-08  Score=65.31  Aligned_cols=73  Identities=22%  Similarity=0.294  Sum_probs=47.4

Q ss_pred             ecceeeeecCCcEEEEEEecCC-------CCCeeEEEECCeecC--------C----------CeeEeceEEeeccceEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGN-------PTPHISWKLDGYPLA--------G----------DRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~~--------~----------~~~~~~~~~~~~~~~~~   62 (291)
                      .|..+++.+|++|+|+|.+...       ....+.|++....-.        .          ++...   ........+
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~   83 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHL---LGDPQTKNC   83 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEE---CSCGGGTBC
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEE---eeeCcCCEE
Confidence            4677899999999999998521       123478987432110        0          01111   111123457


Q ss_pred             EEEEeecCCCCCeEEEEEEeC
Q psy14540         63 HVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      +|.|.+++.+|+|.|.|.+..
T Consensus        84 sL~I~~v~~~DsG~Y~C~v~~  104 (121)
T d2g5ra1          84 TLSIRDARMSDAGRYFFRMEK  104 (121)
T ss_dssp             CEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEEe
Confidence            899999999999999999964

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.7e-08  Score=58.07  Aligned_cols=71  Identities=18%  Similarity=0.237  Sum_probs=52.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...|.. .|..|++|+|.|... .....+.|+|+|.....   ..     ......+.+.|.+++..|+|.|+|..
T Consensus         4 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~---~~-----~~~~~~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           4 TPTLSVHPGP-EVISGEKVTFYCRLD-TATSMFLLLKEGRSSHV---QR-----GYGKVQAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CCEEEEESCS-EEETTCEEEEEEECS-SSCSEEEEEEESSSCEE---EE-----EECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred             CCEEEEeCCC-cccCCCcEEEEECCC-CCCCEEEEEECCCccce---ee-----cCCCceeEEEecccChhcCceEEEEe
Confidence            6888888865 588999999999975 45667999998753221   10     11223466889999999999999974


Q ss_pred             e
Q psy14540         82 T   82 (291)
Q Consensus        82 ~   82 (291)
                      .
T Consensus        74 ~   74 (93)
T d1olla2          74 S   74 (93)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.68  E-value=1.5e-07  Score=56.99  Aligned_cols=67  Identities=19%  Similarity=0.317  Sum_probs=44.5

Q ss_pred             CCcEEEEEEecCCCCCeeEEEE--CCee---c---CC-CeeEeceEE--eeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540         17 GPPVSLKCIATGNPTPHISWKL--DGYP---L---AG-DRFVMGQYM--SLHGDVISHVNISSVRVEDSGIYQCTATN   83 (291)
Q Consensus        17 g~~v~l~C~~~~~~~~~v~W~~--~~~~---~---~~-~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~~   83 (291)
                      |++|+|.|.........+.||+  .++.   +   .. ......++.  .......++|.|.+++.+|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            7899999998876667899998  2221   1   11 111111111  12334458899999999999999998764

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.67  E-value=3.2e-07  Score=55.37  Aligned_cols=77  Identities=18%  Similarity=0.243  Sum_probs=53.6

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...|.. .|..|++|+|.|... .....+.++|+|.........  . ........+.+.|.+++..|+|.|+|..
T Consensus         2 KPsLsa~P~~-~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~--~-~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   76 (96)
T d1nkra1           2 KPSLLAHPGP-LVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLI--G-EHHDGVSKANFSISRMTQDLAGTYRCYG   76 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEE--C-EEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeee--e-eecCCceEEEEEEcccCcccCeEEEEEE
Confidence            6888888854 689999999999976 445678899987532211100  0 1112233466889999999999999987


Q ss_pred             eC
Q psy14540         82 TN   83 (291)
Q Consensus        82 ~~   83 (291)
                      ..
T Consensus        77 ~~   78 (96)
T d1nkra1          77 SV   78 (96)
T ss_dssp             EB
T ss_pred             Ec
Confidence            53

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.3e-08  Score=59.94  Aligned_cols=84  Identities=18%  Similarity=0.264  Sum_probs=53.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.+.+-+.......++.++|.|.+.+ .| ...|+|++||+.+..............+  ...+.|.|....+.....|
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1q0xl2           5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEE
Confidence            566654433322234677899999988 34 4679999999887643332222211112  2446677877666667799


Q ss_pred             EEEEeCCC
Q psy14540         78 QCTATNRV   85 (291)
Q Consensus        78 ~C~~~~~~   85 (291)
                      +|.+.+..
T Consensus        85 tC~V~H~~   92 (102)
T d1q0xl2          85 SCQVTHEG   92 (102)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            99998754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.5e-07  Score=56.36  Aligned_cols=82  Identities=11%  Similarity=0.139  Sum_probs=51.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.+-+.. .+..|+.++|.|.+.+ .| ...|+|.+||..+...... .. ....+..........+..++.+.|+|
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~-~~-~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           5 TPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHS-DL-SFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEC-CC-EECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             CCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCcccc-ce-ecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            5666554322 3567899999999998 34 5679999999988633221 11 11222222233333445566779999


Q ss_pred             EEeCCCC
Q psy14540         80 TATNRVG   86 (291)
Q Consensus        80 ~~~~~~~   86 (291)
                      .+.+...
T Consensus        82 ~V~H~sl   88 (100)
T d1k5nb_          82 RVNHVTL   88 (100)
T ss_dssp             EEECTTC
T ss_pred             EEEeCCC
Confidence            9997643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.65  E-value=6.6e-08  Score=60.59  Aligned_cols=76  Identities=16%  Similarity=0.241  Sum_probs=50.1

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC---------CCeeEec-eEEeeccceEEEEEEeecCCC
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA---------GDRFVMG-QYMSLHGDVISHVNISSVRVE   72 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~---------~~~~~~~-~~~~~~~~~~~~l~i~~~~~~   72 (291)
                      ..|..+++.+|++++|.|...+..  ...+.|++.  ++.+.         ....... ..........+.|.|.+++.+
T Consensus         5 tQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE   84 (111)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcc
Confidence            347778999999999999987532  345999983  22210         0000000 111123345688999999999


Q ss_pred             CCeEEEEEEe
Q psy14540         73 DSGIYQCTAT   82 (291)
Q Consensus        73 d~G~y~C~~~   82 (291)
                      |+|.|.|...
T Consensus        85 Dsa~YyCA~~   94 (111)
T d1cd0a_          85 DEADYYCQSY   94 (111)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCcEEEEeec
Confidence            9999999865

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.64  E-value=4.9e-07  Score=54.87  Aligned_cols=83  Identities=13%  Similarity=0.173  Sum_probs=49.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +|.+.+-+.. ....++..+|.|.+.+ .| ...|+|++||..+..+...... ....+..++.+....+...+...|+|
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~-~~~~dgtf~~~s~l~~~~~~~~~ytC   81 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGL-IQNGDWTFQTLVMLETVPRSGEVYTC   81 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCC-EECSSSCEEEEEEEECCCCTTCEEEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeE-EeCCCcEEEEEEEeeEcCCCCCEEEE
Confidence            5766654433 2445777899999998 34 4679999999988644333222 22223334444455667778889999


Q ss_pred             EEeCCCC
Q psy14540         80 TATNRVG   86 (291)
Q Consensus        80 ~~~~~~~   86 (291)
                      .+.+...
T Consensus        82 ~V~H~sl   88 (98)
T d1d5mb1          82 QVEHPSV   88 (98)
T ss_dssp             EEECTTC
T ss_pred             EEEECCC
Confidence            9987654

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=1.1e-07  Score=59.10  Aligned_cols=96  Identities=11%  Similarity=0.104  Sum_probs=53.9

Q ss_pred             eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      .+.+|++|.|.|.. .......+.|+|.........-........ .   .+  ......|..               .+
T Consensus        10 ~v~~G~~V~L~c~~-~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~-~---~~--~~~~y~gR~---------------~l   67 (107)
T d1l6za1          10 QVAEDNNVLLLVHN-LPLALGAFAWYKGNTTAIDKEIARFVPNSN-M---NF--TGQAYSGRE---------------II   67 (107)
T ss_dssp             SCCTTCCEEEEEES-CCTTCSEEEEEESSCCSGGGEEEEECSTTC-C---EE--CCSSCCSSE---------------EE
T ss_pred             cccCCCCEEEEecC-CCCCceEEEEEeCcccCCceeeEEEEcCCC-c---cc--cCCcceeEE---------------EE
Confidence            35699999999985 233456899999654322111010000000 0   00  000001111               11


Q ss_pred             EEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEE
Q psy14540        197 RVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRV  237 (291)
Q Consensus       197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v  237 (291)
                         ..+.+|.|.+++.+|+|.|+|.+.+.. +.....+.|.|
T Consensus        68 ---~~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          68 ---YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             ---CTTSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             ---cccccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence               125689999999999999999998765 45566666655

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.64  E-value=7.8e-08  Score=60.36  Aligned_cols=77  Identities=18%  Similarity=0.240  Sum_probs=50.9

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-------CCeeEe-----ceEEeeccceEEEEEEeecC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-------GDRFVM-----GQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-------~~~~~~-----~~~~~~~~~~~~~l~i~~~~   70 (291)
                      +++.|....+.+|++++|.|.... ....+.||+  .|+.+.       ......     .............|.|.+++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA   80 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred             eEECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence            567788889999999999998764 355799998  232211       010000     01111122223679999999


Q ss_pred             CCCCeEEEEEEe
Q psy14540         71 VEDSGIYQCTAT   82 (291)
Q Consensus        71 ~~d~G~y~C~~~   82 (291)
                      .+|+|.|.|...
T Consensus        81 ~~DsavYyCA~~   92 (112)
T d2bnub1          81 PSQTSVYFCASS   92 (112)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HHHCEEEEEeec
Confidence            999999999875

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=4.1e-07  Score=55.43  Aligned_cols=82  Identities=15%  Similarity=0.154  Sum_probs=51.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.+-+.. .+..|+.++|.|.+.+ .| ...|+|+++|..+........  ....+...+......+...+.+.|+|
T Consensus         4 ~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~--~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (99)
T d1lk2b_           4 TPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDM--SFSKDWSFYILAHTEFTPTETDTYAC   80 (99)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEE--EECTTCCEEEEEEEEECCCSSCCEEE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECce--eECCCCCEEEEEEeEecCcCCCEEEE
Confidence            6766654432 2457888999999998 44 567999999998874332211  11222223333333445566678999


Q ss_pred             EEeCCCC
Q psy14540         80 TATNRVG   86 (291)
Q Consensus        80 ~~~~~~~   86 (291)
                      .+.+...
T Consensus        81 ~V~H~sl   87 (99)
T d1lk2b_          81 RVKHDSM   87 (99)
T ss_dssp             EEECTTS
T ss_pred             EEEeCCC
Confidence            9987543

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.62  E-value=1.3e-07  Score=59.92  Aligned_cols=80  Identities=18%  Similarity=0.198  Sum_probs=51.8

Q ss_pred             cceeecceeeeecCCcEEEEEEecCC--CCCeeEEEE--CCeecC--------CCee-E---eceEE--eeccceEEEEE
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKL--DGYPLA--------GDRF-V---MGQYM--SLHGDVISHVN   65 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~~--------~~~~-~---~~~~~--~~~~~~~~~l~   65 (291)
                      ++.+.|..++..+|++++|.|...+.  ....+.||+  .|+.+.        .... .   ..+..  .......+.|+
T Consensus         3 kl~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~   82 (120)
T d1ypzf1           3 KLEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILT   82 (120)
T ss_dssp             SEECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEE
T ss_pred             CeEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccc
Confidence            35566677888899999999997652  245699998  222111        1110 0   01111  11234457899


Q ss_pred             EeecCCCCCeEEEEEEeC
Q psy14540         66 ISSVRVEDSGIYQCTATN   83 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~   83 (291)
                      |.+++.+|+|.|.|....
T Consensus        83 I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          83 IYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             ECSCCGGGCSEEEEEECC
T ss_pred             ccccccccceeEEEEEcC
Confidence            999999999999998763

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.8e-07  Score=55.95  Aligned_cols=78  Identities=15%  Similarity=0.154  Sum_probs=50.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...|.. .|..|++|+|.|... .....+.++|+|...........  ........+.+.|.+++..|+|.|+|..
T Consensus         4 kPsLsa~P~~-~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~--~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           4 KPTLSAQPSP-VVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQ--PHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC--------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeE--EcCCCceEEEEEeeecccCCCeEEEEee
Confidence            6888888865 599999999999975 34567888888765332111110  0011223456889999999999999987


Q ss_pred             eC
Q psy14540         82 TN   83 (291)
Q Consensus        82 ~~   83 (291)
                      ..
T Consensus        80 ~~   81 (98)
T d1ugna2          80 YD   81 (98)
T ss_dssp             EC
T ss_pred             Ec
Confidence            63

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.61  E-value=4.3e-07  Score=54.97  Aligned_cols=83  Identities=13%  Similarity=0.181  Sum_probs=50.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-C-CCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-N-PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.+.+.. .+..++.++|.|.+.+ . +...|+|++||+.+..+....... ...+..+.......+...+...|+|
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~-~~~dgty~~~s~L~v~~~~~~~ytC   80 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQ-PNGDWTYQTLSHLALTPSYGDTYTC   80 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCE-ECSSSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceE-ECCCCCEEEEEEeEcCCCCCCEEEE
Confidence            7877765433 3567889999999998 3 467899999999876332221111 1112222222222344555568999


Q ss_pred             EEeCCCC
Q psy14540         80 TATNRVG   86 (291)
Q Consensus        80 ~~~~~~~   86 (291)
                      .+.+...
T Consensus        81 ~V~H~sl   87 (98)
T d1hdmb1          81 VVEHIGA   87 (98)
T ss_dssp             EEECTTS
T ss_pred             EEEeCCC
Confidence            9997654

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=4.6e-08  Score=60.83  Aligned_cols=76  Identities=14%  Similarity=0.176  Sum_probs=48.3

Q ss_pred             eeeeecCCcEEEEEEecCCC----CCeeEEEECCeecC---CCeeEec----eEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540         11 QQTLQPGPPVSLKCIATGNP----TPHISWKLDGYPLA---GDRFVMG----QYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~---~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      .+++..|++++|.|.+....    ...+.|.+++..+.   .......    .+......+.++|.|.+++.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            35788999999999876422    23578888776542   1111110    0011112223579999999999999999


Q ss_pred             EEeCCCC
Q psy14540         80 TATNRVG   86 (291)
Q Consensus        80 ~~~~~~~   86 (291)
                      .+.+..+
T Consensus        83 ~V~~~~~   89 (105)
T d1dr9a1          83 VVLKYEK   89 (105)
T ss_dssp             EEEECCT
T ss_pred             EEEeCCC
Confidence            9875433

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.60  E-value=6.2e-08  Score=60.86  Aligned_cols=79  Identities=15%  Similarity=0.213  Sum_probs=51.5

Q ss_pred             ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-------CCeeEe-----ceEEeeccceEEEEEEeecC
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-------GDRFVM-----GQYMSLHGDVISHVNISSVR   70 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-------~~~~~~-----~~~~~~~~~~~~~l~i~~~~   70 (291)
                      |.+.|..+.+.+|++++|.|.... ....+.||+.  |+.+.       ......     ...........+.|.|.+++
T Consensus         1 V~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   79 (112)
T d2cdeb1           1 IYQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESAR   79 (112)
T ss_dssp             EEEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCC
T ss_pred             CEECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccc
Confidence            456788889999999999999764 3457999982  22110       000000     01111122334679999999


Q ss_pred             CCCCeEEEEEEeCC
Q psy14540         71 VEDSGIYQCTATNR   84 (291)
Q Consensus        71 ~~d~G~y~C~~~~~   84 (291)
                      .+|+|.|.|.+...
T Consensus        80 ~~Dsa~YyCA~~~~   93 (112)
T d2cdeb1          80 PSHTSQYLCASSEN   93 (112)
T ss_dssp             TTTCSEEEEEEECS
T ss_pred             ccccccEEEEEecC
Confidence            99999999987643

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=1e-07  Score=59.09  Aligned_cols=75  Identities=21%  Similarity=0.410  Sum_probs=49.7

Q ss_pred             ceeeeecCCcEEEEEEecC--CCCCeeEEEEC--Cee----cC----CCeeE---eceE--EeeccceEEEEEEeecCCC
Q psy14540         10 IQQTLQPGPPVSLKCIATG--NPTPHISWKLD--GYP----LA----GDRFV---MGQY--MSLHGDVISHVNISSVRVE   72 (291)
Q Consensus        10 ~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~--~~~----~~----~~~~~---~~~~--~~~~~~~~~~l~i~~~~~~   72 (291)
                      ....+.+|++++|.|.+.+  .....+.|++.  ++.    +.    ...+.   ..+.  ........++|+|.+++.+
T Consensus         3 ~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~e   82 (110)
T d1u9ka_           3 ERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVT   82 (110)
T ss_dssp             EEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccC
Confidence            4567899999999999875  34456899983  321    11    11100   1111  1123456788999999999


Q ss_pred             CCeEEEEEEeCC
Q psy14540         73 DSGIYQCTATNR   84 (291)
Q Consensus        73 d~G~y~C~~~~~   84 (291)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCa~~~~   94 (110)
T d1u9ka_          83 DSGLYRCVIYHP   94 (110)
T ss_dssp             GCEEEEEEEECT
T ss_pred             CCEEEEEEEeCC
Confidence            999999998643

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=3.8e-08  Score=60.62  Aligned_cols=84  Identities=14%  Similarity=0.241  Sum_probs=51.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.+.+-+.......++.++|.|.+.+ .| ...|.|++||..+..............+  ...+.|.|....+.....|
T Consensus         5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1rzfl2           5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEE
Confidence            566654433322334677999999998 33 4579999999988754333222221111  2335666665554445589


Q ss_pred             EEEEeCCC
Q psy14540         78 QCTATNRV   85 (291)
Q Consensus        78 ~C~~~~~~   85 (291)
                      +|.+.+..
T Consensus        85 tC~V~H~~   92 (102)
T d1rzfl2          85 SCQVTHEG   92 (102)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence            99998764

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.58  E-value=7.2e-07  Score=54.34  Aligned_cols=81  Identities=14%  Similarity=0.200  Sum_probs=50.4

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccc--eEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGD--VISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y   77 (291)
                      ||.+.+-+.. .+..|+..+|.|.+.+ .| ...|+|++||+.+..+...........+.  ..+.|.+.   ..+...|
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~y   80 (101)
T d1fnga1           5 APEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTDDFY   80 (101)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTTCCE
T ss_pred             CCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCCCEE
Confidence            6777664433 2556888999999998 44 56899999999887443222221111111  23445553   3445589


Q ss_pred             EEEEeCCCC
Q psy14540         78 QCTATNRVG   86 (291)
Q Consensus        78 ~C~~~~~~~   86 (291)
                      +|.+.+...
T Consensus        81 tC~V~H~sl   89 (101)
T d1fnga1          81 DCEVDHWGL   89 (101)
T ss_dssp             EEEEECTTC
T ss_pred             EEEEEECCC
Confidence            999987643

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.8e-07  Score=56.60  Aligned_cols=30  Identities=10%  Similarity=0.049  Sum_probs=23.7

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      ..+..|++|+|.|..  ......+.|+++|..
T Consensus        13 ~~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~   42 (95)
T d1olla1          13 FMVPKEKQVTICCQG--NYGAVEYQLHFEGSL   42 (95)
T ss_dssp             SEEETTCCEEEEEEC--CTTCCEEEEEETTEE
T ss_pred             CcccCCCcEEEEEec--CCCccEEEEEECCCC
Confidence            346799999999986  345678999998854

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=8.6e-08  Score=61.58  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=30.8

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  238 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~  238 (291)
                      ..+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            4679999999999999999999888777777777664

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.57  E-value=7.8e-07  Score=54.01  Aligned_cols=83  Identities=16%  Similarity=0.265  Sum_probs=50.6

Q ss_pred             CCCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          1 SHPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      .+|.+.+-+.. .+..|+..+|.|.+.+ .| ...|+|++||..+..+....... ...+..........+...+...|+
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~-~~~dgtf~~~s~l~v~~~~~~~yt   81 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFL-SKSDHSFFKISYLTFLPSADEIYD   81 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCE-ECTTSCEEEEEEEEECCCTTCCEE
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceE-ECCCCCEEEEEEEEEcCCCCCEEE
Confidence            36777664432 3567889999999998 34 56799999999886433222221 122222222222233445556899


Q ss_pred             EEEeCCC
Q psy14540         79 CTATNRV   85 (291)
Q Consensus        79 C~~~~~~   85 (291)
                      |.+.+..
T Consensus        82 C~V~H~s   88 (99)
T d1uvqa1          82 CKVEHWG   88 (99)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998764

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.3e-08  Score=60.49  Aligned_cols=29  Identities=14%  Similarity=0.439  Sum_probs=23.4

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNG  145 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~  145 (291)
                      +...+|++++|.|.. .......+.|++..
T Consensus         4 V~~~~G~svtL~C~~-s~~~~~~~~W~~~~   32 (97)
T d2nxyb1           4 VLGKKGDTVELTCTA-SQKKSIQFHWKNSN   32 (97)
T ss_dssp             EEEETTSCEEECCBC-SSSSCCCEEEEETT
T ss_pred             EEEEcCCcEEEEEEE-ecCCCceEEEEEeC
Confidence            566799999999998 56666789999854

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=8.4e-07  Score=53.45  Aligned_cols=80  Identities=19%  Similarity=0.281  Sum_probs=51.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.+....   ..|+.++|.|.+.+ .| ...|+|++||..+.......  .....+...+......+...+...|+|
T Consensus         3 PP~V~v~~~~---~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~--~~~~~~~t~~~~s~l~~~~~~~~~ytC   77 (94)
T d1t7va1           3 PPSVVVTSHQ---APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGD--VLHNGNGTYQSWVVVAVPPQDTAPYSC   77 (94)
T ss_dssp             CCEEEEEEEE---CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEE--EEETTTTEEEEEEEEEECTTCCSCEEE
T ss_pred             CCEeEEeccC---CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEee--eecCCCCeEEEEEEeEeCCCCCCEEEE
Confidence            6777664332   35889999999998 44 46799999999876432211  112223344444455556667779999


Q ss_pred             EEeCCCC
Q psy14540         80 TATNRVG   86 (291)
Q Consensus        80 ~~~~~~~   86 (291)
                      .+.+...
T Consensus        78 ~V~H~sl   84 (94)
T d1t7va1          78 HVQHSSL   84 (94)
T ss_dssp             EEEETTC
T ss_pred             EEEECCC
Confidence            9987643

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=1.3e-07  Score=58.64  Aligned_cols=86  Identities=16%  Similarity=0.254  Sum_probs=52.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc---ceEEEEEEeecCCCCCeE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG---DVISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~   76 (291)
                      +|.+.+-+.......+..++|.|.+.+ .| ...|+|.+||+.+..............+   ...+.|.|..-.+.....
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~   84 (107)
T d1mjul2           5 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS   84 (107)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCE
Confidence            566544332222234678999999988 44 4679999999987744322211111111   233567777766655668


Q ss_pred             EEEEEeCCCCc
Q psy14540         77 YQCTATNRVGS   87 (291)
Q Consensus        77 y~C~~~~~~~~   87 (291)
                      |+|.+.+....
T Consensus        85 ytC~V~H~~~~   95 (107)
T d1mjul2          85 YTCEATHKTST   95 (107)
T ss_dssp             EEEEEECTTCS
T ss_pred             EEEEEEECCCC
Confidence            99999875543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=6.6e-08  Score=61.55  Aligned_cols=74  Identities=16%  Similarity=0.146  Sum_probs=47.8

Q ss_pred             ecceeeeecCCcEEEEEEecC----C--CCCeeEEEECCeecC----------------CCeeEeceEEeeccceEEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATG----N--PTPHISWKLDGYPLA----------------GDRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~----~--~~~~v~W~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~   65 (291)
                      .|..+.+.+|++|+|+|.+..    .  ....+.|++......                ..+...   ........++|+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~sL~   82 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAEL---MGNMDHKVCNLL   82 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEE---CSCGGGTBCCEE
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEE---EEeCcCCEEEEE
Confidence            467789999999999999852    1  123466777322110                111111   111123457799


Q ss_pred             EeecCCCCCeEEEEEEeCC
Q psy14540         66 ISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~~~   84 (291)
                      |.+++.+|+|.|.|.+...
T Consensus        83 I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          83 LKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             ECSCCGGGCEEEEEEEECC
T ss_pred             ECCCChhHCEEEEEEEEeC
Confidence            9999999999999999754

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.3e-07  Score=58.68  Aligned_cols=106  Identities=19%  Similarity=0.199  Sum_probs=55.9

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA  188 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  188 (291)
                      ..|..+.+.+|++++|.|....+..  ...+.|++....-..  ........         .......+.+..       
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~--~~~~~~~~---------~~~~~~~~r~~~-------   65 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGC--ITLISSEG---------YVSSKYAGRANL-------   65 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----C--EEEEESSS---------CBCTTTTTTEEE-------
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCc--EEEEECcc---------cccceecCCccE-------
Confidence            3456688889999999998732221  235789884321100  00000000         000111111211       


Q ss_pred             CCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC
Q psy14540        189 SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP  240 (291)
Q Consensus       189 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~  240 (291)
                            .........+|.|.+++.+|+|.|.|.+..........+.|.|...
T Consensus        66 ------~~~~~~~~~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          66 ------TNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             ------EEETTTTEEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             ------eeeCCCCEEEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence                  1111223467899999999999999988755544444566666543

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.54  E-value=7.4e-07  Score=55.91  Aligned_cols=32  Identities=19%  Similarity=0.393  Sum_probs=24.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|..........+.||+.
T Consensus         6 P~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq   37 (114)
T d3bp5a1           6 PAWLTVSEGANATFTCSLSNWSEDLMLNWNRL   37 (114)
T ss_dssp             SSEEEEETTCCEEEEEEESCCCTTCEEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEECCCCCcceEEEEEE
Confidence            45578899999999999844444567899983

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=6.3e-08  Score=60.79  Aligned_cols=69  Identities=13%  Similarity=0.229  Sum_probs=41.3

Q ss_pred             eeeecCCcEEEEEEecCCC---CCeeEE--EECCee-cC---C---------CeeEeceEEeeccceEEEEEEeecCCCC
Q psy14540         12 QTLQPGPPVSLKCIATGNP---TPHISW--KLDGYP-LA---G---------DRFVMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~---~~~v~W--~~~~~~-~~---~---------~~~~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      +.+..|++++|+|.+....   ...+.|  .++... +.   .         .++....  .. ....++|.|.+++.+|
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~--~~-~~~~~sL~I~~v~~~D   80 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRT--SF-DSDSWTLRLHNLQIKD   80 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSE--EE-ETTTTEEEECSCCGGG
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEE--ec-cCCeEEEEECCCChhH
Confidence            5678999999999986422   222444  443221 10   0         0111000  00 1122569999999999


Q ss_pred             CeEEEEEEeC
Q psy14540         74 SGIYQCTATN   83 (291)
Q Consensus        74 ~G~y~C~~~~   83 (291)
                      +|.|.|.+..
T Consensus        81 ~G~Y~C~V~~   90 (110)
T d1ncna_          81 KGLYQCIIHH   90 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEEEEe
Confidence            9999999863

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=3.7e-07  Score=54.55  Aligned_cols=79  Identities=16%  Similarity=0.162  Sum_probs=47.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.+....   ..+..++|.|.+.+ .| ...|+|++||..+..................+.|.+.   ..+...|+|
T Consensus         3 PP~V~v~~~~---~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC   76 (91)
T d3frua1           3 PPSMRLKARP---GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQC   76 (91)
T ss_dssp             CCEEEEEEEE---CSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEE
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEE
Confidence            6766653322   24568999999998 44 5679999999987744332211111111123445443   445568999


Q ss_pred             EEeCCCC
Q psy14540         80 TATNRVG   86 (291)
Q Consensus        80 ~~~~~~~   86 (291)
                      ++.+...
T Consensus        77 ~V~H~sL   83 (91)
T d3frua1          77 QVEHEGL   83 (91)
T ss_dssp             EEECTTS
T ss_pred             EEEeCCC
Confidence            9987643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.53  E-value=2.6e-07  Score=58.55  Aligned_cols=77  Identities=21%  Similarity=0.377  Sum_probs=52.8

Q ss_pred             cceeecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------------CCeeEeceEEeeccceEEEEEE
Q psy14540          4 QLIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------------GDRFVMGQYMSLHGDVISHVNI   66 (291)
Q Consensus         4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i   66 (291)
                      .++..+..+.+.+|++++|.|.+.+..  ...+.||+  .|+.+.             .+++..   ........+.|.|
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~---s~~~~~~~~~L~i   79 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQG---DIDIAKNLAVLKI   79 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEE---EEEGGGTEEEEEE
T ss_pred             eEeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeeccccccee---eccccccceeccc
Confidence            355667778899999999999987533  35699997  232111             112211   1112334688999


Q ss_pred             eecCCCCCeEEEEEEeC
Q psy14540         67 SSVRVEDSGIYQCTATN   83 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~~   83 (291)
                      .+++.+|+|.|.|....
T Consensus        80 ~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          80 LAPSERDEGSYYCACDT   96 (120)
T ss_dssp             SSCCGGGCEEEEEEEEC
T ss_pred             ccccccCCceeecCccc
Confidence            99999999999998753

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.2e-07  Score=58.54  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=52.2

Q ss_pred             CCCccee-ecc-eeeeecCCcEEEEEEecC-CCC-CeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCC
Q psy14540          1 SHPQLIY-KFI-QQTLQPGPPVSLKCIATG-NPT-PHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDS   74 (291)
Q Consensus         1 s~p~~~~-~~~-~~~v~~g~~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~   74 (291)
                      +||.+.+ .+. ......+.+++|.|.+.+ .|. ..|+|+++|..+......... ....+  ...+.|.|....+...
T Consensus         3 ~pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~-~~~~~~y~~~S~L~v~~~~w~~~   81 (104)
T d1o0va1           3 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAST-TQEGELASTQSELTLSQKHWLSD   81 (104)
T ss_dssp             CCCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEE-EEETTEEEEEEEEEEEHHHHHTT
T ss_pred             CCCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeE-eCCCCeEEEEEEEEECHHHcCCC
Confidence            4676544 232 222344567999999988 443 469999999988743222211 11111  2346677776665556


Q ss_pred             eEEEEEEeCCCC
Q psy14540         75 GIYQCTATNRVG   86 (291)
Q Consensus        75 G~y~C~~~~~~~   86 (291)
                      ..|+|.+.+...
T Consensus        82 ~~ytC~V~H~~~   93 (104)
T d1o0va1          82 RTYTCQVTYQGH   93 (104)
T ss_dssp             CCEEEEEEETTE
T ss_pred             CEEEEEEEECCE
Confidence            689999997653

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=4e-08  Score=60.25  Aligned_cols=29  Identities=7%  Similarity=-0.034  Sum_probs=23.0

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGL  146 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~  146 (291)
                      ..+..|++|+|.|..  ..+...+.|+++|.
T Consensus        16 ~~V~~G~~VTL~C~~--~~~~~~f~l~k~g~   44 (99)
T d1ucta1          16 PVIPLDGSVKIQCQA--IREAYLTQLMIIKN   44 (99)
T ss_dssp             SEEETTCCEEEEECC--CTTCSEEEEEEEET
T ss_pred             CceeCCCeEEEEEcC--CCCCcEEEEEECCC
Confidence            357789999999986  45667899998764

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=5.6e-07  Score=54.31  Aligned_cols=32  Identities=25%  Similarity=0.483  Sum_probs=27.5

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSD  151 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~  151 (291)
                      .++.++|.|.+.+++|.+.|.|+++|+.+...
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~   46 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAI   46 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCS
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEeccc
Confidence            57788999999777999999999999887644

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.51  E-value=3.5e-07  Score=58.09  Aligned_cols=78  Identities=19%  Similarity=0.322  Sum_probs=50.9

Q ss_pred             ceeecceeeeecCCcEEEEEEecCC--CCCeeEEEE--CCeecC-------CCeeE------eceEEe--eccceEEEEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKL--DGYPLA-------GDRFV------MGQYMS--LHGDVISHVN   65 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~~-------~~~~~------~~~~~~--~~~~~~~~l~   65 (291)
                      +.+.+..+++.+|++++|.|.+.+.  ....+.||+  .++.+.       .....      ..++..  ......+.|.
T Consensus         4 l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~   83 (123)
T d1hxmb1           4 LEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLT   83 (123)
T ss_dssp             EECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEE
T ss_pred             eECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeec
Confidence            4455567788999999999998763  345699998  232211       00000      011111  1234457899


Q ss_pred             EeecCCCCCeEEEEEEe
Q psy14540         66 ISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~   82 (291)
                      |.+++.+|+|.|.|...
T Consensus        84 i~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          84 IHNVEKQDIATYYCALW  100 (123)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccccccCcEEEEeee
Confidence            99999999999999865

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=2.6e-07  Score=58.75  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=24.3

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEEEE
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNLRV  237 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~v  237 (291)
                      +.+|.|.++...|+|.|.|.+.+..+..  ...+.|.|
T Consensus        80 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          80 DGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             EEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            4679999999999999999998754332  33445544

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.48  E-value=1.5e-06  Score=52.53  Aligned_cols=84  Identities=10%  Similarity=0.106  Sum_probs=48.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      +|.+.+.|... ...|+..+|.|.+.+ .| ...|.|.+||..+..+...... ....+..++......+...+...|+|
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~-~~~~dgty~~~s~l~v~~~~~~~ytC   79 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPL-IRNGDWTFQILVMLEMTPQRGDVYTC   79 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCC-EECSSSCEEEEEEEECCSCTTCCEEE
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEecee-ecCCCceEEEEEEeccCCCCCCEEEE
Confidence            57776655432 445788899999998 44 5779999999877644332222 22222333333344556677779999


Q ss_pred             EEeCCCCc
Q psy14540         80 TATNRVGS   87 (291)
Q Consensus        80 ~~~~~~~~   87 (291)
                      .+.+....
T Consensus        80 ~V~H~sl~   87 (97)
T d1uvqb1          80 HVEHPSLQ   87 (97)
T ss_dssp             EEECTTCS
T ss_pred             EEEeCCCC
Confidence            99876543

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.48  E-value=6.7e-07  Score=55.95  Aligned_cols=80  Identities=16%  Similarity=0.229  Sum_probs=52.1

Q ss_pred             CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-------CCeeEe----ceEEeeccceEEEEEEeec
Q psy14540          3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-------GDRFVM----GQYMSLHGDVISHVNISSV   69 (291)
Q Consensus         3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-------~~~~~~----~~~~~~~~~~~~~l~i~~~   69 (291)
                      +.+.+.|....+.+|++++|.|.........+.||+.  |+.+.       ......    ...........+.|.|..+
T Consensus         2 t~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~   81 (112)
T d1fo0b_           2 TLLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVA   81 (112)
T ss_dssp             CSEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             CeEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecC
Confidence            4567889899999999999999987655567999983  33211       111110    0111111111245888889


Q ss_pred             CCCCCeEEEEEEe
Q psy14540         70 RVEDSGIYQCTAT   82 (291)
Q Consensus        70 ~~~d~G~y~C~~~   82 (291)
                      ..+|++.|.|...
T Consensus        82 ~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          82 NMSQGRTLYCTCS   94 (112)
T ss_dssp             SCCSCEEEEEEEE
T ss_pred             CccCCccEEEEEe
Confidence            9999999999865

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=7.2e-08  Score=58.41  Aligned_cols=74  Identities=19%  Similarity=0.205  Sum_probs=50.5

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+...|.. .|..|++|+|.|... .+...+.++|+|..........     ......+.+.|.+++..|+|.|+|..
T Consensus         4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~-----~~~~~~a~F~i~~v~~~~~G~Y~C~y   76 (96)
T d1ugna1           4 KPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIP-----QELVKKGQFPIPSITWEHTGRYRCYY   76 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSC-----HHHHTTTEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEcc-----CCCCCEEEEEEEecCHHHCCeEEEEE
Confidence            6788887774 588999999999965 4556788889875322000000     00111244779999999999999986


Q ss_pred             e
Q psy14540         82 T   82 (291)
Q Consensus        82 ~   82 (291)
                      .
T Consensus        77 ~   77 (96)
T d1ugna1          77 G   77 (96)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.2e-06  Score=54.96  Aligned_cols=92  Identities=15%  Similarity=0.196  Sum_probs=51.3

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      |....+.+|++++|.|.+........+.||+....-....            .+.+.......        ....+....
T Consensus         7 P~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~------------~~~i~~~~~~~--------~~~~~~~~~   66 (114)
T d1akjd_           7 PLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASP------------TFLLYLSQNKP--------KAAEGLDTQ   66 (114)
T ss_dssp             CCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCC------------EEEEEESSSCC--------EECTTCCTT
T ss_pred             CCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEE------------EEEEecCCCee--------EcCCCCCCc
Confidence            3446788999999999985444455799998432110000            01111110000        001112222


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      .+..........|.|.++..+|+|.|.|.+..
T Consensus        67 rfs~~~~~~~~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          67 RFSGKRLGDTFVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCCChhcEEccCCCCCCEEEeEeEcC
Confidence            33333344456789999999999999998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.45  E-value=1.4e-06  Score=54.30  Aligned_cols=31  Identities=16%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      ..+.+.+|++++|.|..........+.||+.
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq   36 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQ   36 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEE
Confidence            3578889999999999743344567899983

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4.4e-07  Score=56.27  Aligned_cols=85  Identities=16%  Similarity=0.266  Sum_probs=52.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc---ceEEEEEEeecCCCCCeE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG---DVISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~   76 (291)
                      +|.+.+-+.......++.++|.|.+.+ .| ...|+|++||..+..............+   ...+.|.|..-.+.....
T Consensus         5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~   84 (107)
T d1c5cl2           5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV   84 (107)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCE
Confidence            566654332222334678999999988 44 4679999999877644322211111111   234677787766655568


Q ss_pred             EEEEEeCCCC
Q psy14540         77 YQCTATNRVG   86 (291)
Q Consensus        77 y~C~~~~~~~   86 (291)
                      |+|.+.+...
T Consensus        85 ytC~V~H~~~   94 (107)
T d1c5cl2          85 YACEVTHQGL   94 (107)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEEECCC
Confidence            9999987653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=2.3e-07  Score=58.70  Aligned_cols=74  Identities=11%  Similarity=0.109  Sum_probs=47.5

Q ss_pred             cceeeeecCCcEEEEEEecCCC---CCeeEEEEC--CeecC--------CCeeEe---ceEEeeccceEEEEEEeecCCC
Q psy14540          9 FIQQTLQPGPPVSLKCIATGNP---TPHISWKLD--GYPLA--------GDRFVM---GQYMSLHGDVISHVNISSVRVE   72 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~--~~~~~--------~~~~~~---~~~~~~~~~~~~~l~i~~~~~~   72 (291)
                      |..+.+.+|++++|.|.+....   ...+.|++.  ++...        ......   ...........+.|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            6677889999999999986422   224889982  32111        000000   0011122334578999999999


Q ss_pred             CCeEEEEEEe
Q psy14540         73 DSGIYQCTAT   82 (291)
Q Consensus        73 d~G~y~C~~~   82 (291)
                      |+|.|.|.+.
T Consensus        86 Dsa~YyCa~~   95 (117)
T d1dqta_          86 DTGLYLCKVE   95 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCEeEEEEEe
Confidence            9999999875

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.7e-07  Score=57.80  Aligned_cols=75  Identities=13%  Similarity=0.188  Sum_probs=48.3

Q ss_pred             ecceeeeecCCcEEEEEEecCCCC---CeeEEEEC--CeecC--------CCe--eEece-EEeeccceEEEEEEeecCC
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNPT---PHISWKLD--GYPLA--------GDR--FVMGQ-YMSLHGDVISHVNISSVRV   71 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~--~~~~~--------~~~--~~~~~-~~~~~~~~~~~l~i~~~~~   71 (291)
                      .|..+.+.+|+.++|.|.+.....   ..+.|++.  ++...        ...  ..... .........+.|.|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            366778899999999999865322   25899983  22110        000  00000 0112234458899999999


Q ss_pred             CCCeEEEEEEe
Q psy14540         72 EDSGIYQCTAT   82 (291)
Q Consensus        72 ~d~G~y~C~~~   82 (291)
                      +|+|.|.|.+.
T Consensus        85 ~Dsa~YyCa~~   95 (118)
T d1i8lc_          85 MDTGLYICKVE   95 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCCEEEEEeEe
Confidence            99999999875

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=98.43  E-value=7.3e-07  Score=53.69  Aligned_cols=81  Identities=16%  Similarity=0.291  Sum_probs=46.0

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.+....   ..+..++|.|.+.+ .| ...|+|.++|..+..............+...+......+...+...|+|
T Consensus         3 pP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC   79 (94)
T d1hyrc1           3 PPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTC   79 (94)
T ss_dssp             CCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEE
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEE
Confidence            5666553322   24567899999998 33 5679999999988743322221111222222212222333444557999


Q ss_pred             EEeCCC
Q psy14540         80 TATNRV   85 (291)
Q Consensus        80 ~~~~~~   85 (291)
                      .+.+..
T Consensus        80 ~V~H~~   85 (94)
T d1hyrc1          80 YMEHSG   85 (94)
T ss_dssp             EEEETT
T ss_pred             EEEECC
Confidence            998654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.43  E-value=1.8e-06  Score=54.07  Aligned_cols=32  Identities=13%  Similarity=0.440  Sum_probs=25.3

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      .+..+.+.+|+.++|.|.. .+.....+.|||.
T Consensus         6 ~P~~v~v~~G~sv~L~C~~-s~~~~~~~~Wyrq   37 (113)
T d2bnqd1           6 IPAALSVPEGENLVLNCSF-TDSAIYNLQWFRQ   37 (113)
T ss_dssp             SSSEEEEETTCCEEEEEEE-SCCCEEEEEEEEE
T ss_pred             eCCEEEEcCCCCEEEEEEE-ecCcccCCeEEEe
Confidence            3455788899999999998 4556668999983

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.42  E-value=5.4e-07  Score=56.75  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=24.8

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      +..+.+.+|+.++|.|.+........+.||+.
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq   36 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSISKLTSIYWLRE   36 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSCCSSEEEEEEE
T ss_pred             CCcEEEcCCCCEEEEEEEeCCCCCCceEEEEe
Confidence            34577899999999999844345567999974

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.7e-06  Score=53.79  Aligned_cols=31  Identities=16%  Similarity=0.322  Sum_probs=22.2

Q ss_pred             cceeecCCCceEEEEEeeCCCC-CceeEEeEC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP-PLTISWLKN  144 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~  144 (291)
                      ..+...+|+.++|.|....... ...+.|++.
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~   35 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKE   35 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEe
Confidence            3467889999999998743332 346789983

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=6.1e-07  Score=55.31  Aligned_cols=32  Identities=25%  Similarity=0.608  Sum_probs=25.8

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEeccCC
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSD  151 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  151 (291)
                      .++.++|.|.+.+.+| ...|.|.+||..+...
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~   50 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDA   50 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGG
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCc
Confidence            4667999999976677 4799999999987543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.41  E-value=1.5e-08  Score=61.62  Aligned_cols=71  Identities=18%  Similarity=0.344  Sum_probs=47.0

Q ss_pred             eeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC-------------CCeeEeceEEeeccceEEEEEEeecCCCCCe
Q psy14540         11 QQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA-------------GDRFVMGQYMSLHGDVISHVNISSVRVEDSG   75 (291)
Q Consensus        11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   75 (291)
                      .++|.+|++++|.|.... ....+.||+  .++.+.             .+++..   ........+.|.|.+++.+|+|
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~---~~~~~~~~~~L~I~~~~~~Dsa   77 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRV---TLDTSKKSSSLLITASRAADTA   77 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCB---CCBGGGTBCCBCCSSCCSTTCS
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceeccccccccee---eccCcceecccCcCCCCcccCE
Confidence            357899999999998764 345699998  233221             111111   1111233467999999999999


Q ss_pred             EEEEEEeCCC
Q psy14540         76 IYQCTATNRV   85 (291)
Q Consensus        76 ~y~C~~~~~~   85 (291)
                      .|.|.+....
T Consensus        78 ~YyCA~~~~~   87 (96)
T d1ymmd1          78 SYFCATDTTS   87 (96)
T ss_dssp             CCEEEEEETT
T ss_pred             EEeEeEecCC
Confidence            9999876443

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.5e-06  Score=52.35  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=46.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC   79 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C   79 (291)
                      ||.+.+....   ..+..++|.|.+.+ .| ...|+|+++|+.+..............+. ........+...+...|+|
T Consensus         3 PP~v~v~~~~---~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~-~~~~s~l~v~~~~~~~ytC   78 (95)
T d1k5na1           3 PPKTHVTHHP---ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRT-FQKWAAVVVPSGEEQRYTC   78 (95)
T ss_dssp             CCEEEEEEEE---EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSC-EEEEEEEEEETTCGGGEEE
T ss_pred             CCccEEEecc---CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCe-EEEEEEEEEEcCCCCEEEE
Confidence            5666553222   23567999999998 33 56799999999877433222222222222 2222222334445568999


Q ss_pred             EEeCCC
Q psy14540         80 TATNRV   85 (291)
Q Consensus        80 ~~~~~~   85 (291)
                      +|.+..
T Consensus        79 ~V~H~~   84 (95)
T d1k5na1          79 HVQHEG   84 (95)
T ss_dssp             EEECTT
T ss_pred             EEEECc
Confidence            999754

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.40  E-value=3.8e-06  Score=51.53  Aligned_cols=76  Identities=20%  Similarity=0.343  Sum_probs=49.6

Q ss_pred             eecceeeeecCCcEEEEEEecCC--CCCeeEEEE--CCeec------C-CCeeEe-----ce--EEeeccceEEEEEEee
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKL--DGYPL------A-GDRFVM-----GQ--YMSLHGDVISHVNISS   68 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~------~-~~~~~~-----~~--~~~~~~~~~~~l~i~~   68 (291)
                      .++....+.+|++++|.|.+.+.  ....+.|++  .|+.+      . ......     .+  ...........|+|.+
T Consensus         5 ~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~   84 (116)
T d7fabh1           5 EQSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSS   84 (116)
T ss_dssp             EEECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             EeECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccc
Confidence            34556678999999999999873  344588987  34322      1 111000     01  1112344567799999


Q ss_pred             cCCCCCeEEEEEEe
Q psy14540         69 VRVEDSGIYQCTAT   82 (291)
Q Consensus        69 ~~~~d~G~y~C~~~   82 (291)
                      ++.+|++.|.|.-.
T Consensus        85 L~~eDtAvYyCAr~   98 (116)
T d7fabh1          85 VTAADTAVYYCARN   98 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEEeeee
Confidence            99999999999754

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.40  E-value=1.7e-06  Score=53.71  Aligned_cols=73  Identities=22%  Similarity=0.409  Sum_probs=49.1

Q ss_pred             eecceeeeecCCcEEEEEEecCC--CCCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .++....+++|++++|.|.+.+.  ....+.|++  .|+.+.        .          +++.+   ..........|
T Consensus         5 ~esg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~ti---s~d~s~~~~~L   81 (119)
T d1qnzh_           5 QQSGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKL---TVEKSSSTVYL   81 (119)
T ss_dssp             EEECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEE---EEETTTTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhccccee---ecccccceeee
Confidence            34555678999999999998863  234589997  343221        0          11111   11234455679


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      +|.+++.+|++.|.|...
T Consensus        82 ~i~~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          82 EFSRLTSDDSAVYYCAIH   99 (119)
T ss_dssp             EEEEECGGGCEEEEEEEC
T ss_pred             eecccCccceeEEEEEEe
Confidence            999999999999999764

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.40  E-value=1.1e-06  Score=55.10  Aligned_cols=31  Identities=23%  Similarity=0.486  Sum_probs=24.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|.. .......+.||+.
T Consensus         7 P~~~~~~~G~~vtL~C~~-~~~~~~~~~Wyrq   37 (114)
T d2cdea1           7 PQSLIILEGKNCTLQCNY-TVSPFSNLRWYKQ   37 (114)
T ss_dssp             CSEEEEETTCCCEEEEEE-CCSCCSEEEEEEE
T ss_pred             CCEEEEeCCCCEEEEEEE-cCCCccCceEEEe
Confidence            445778899999999998 4556678999983

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=1.7e-06  Score=51.41  Aligned_cols=78  Identities=22%  Similarity=0.382  Sum_probs=46.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccc--eEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGD--VISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~y   77 (291)
                      ||.+.+..   ....++.++|.|.+.+ .| ...|+|+++|+.+..+...........+.  ..+.|.|..   .+...|
T Consensus         3 pP~v~v~~---~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~y   76 (89)
T d2mhaa1           3 SPKAHVTH---HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYY   76 (89)
T ss_dssp             CCEEEECC---EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTC
T ss_pred             CCEeEEEc---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEE
Confidence            66665432   2235678999999998 33 46699999999876443322222222222  234455543   344479


Q ss_pred             EEEEeCCC
Q psy14540         78 QCTATNRV   85 (291)
Q Consensus        78 ~C~~~~~~   85 (291)
                      +|.|.+..
T Consensus        77 tC~V~H~~   84 (89)
T d2mhaa1          77 TCHVYHQG   84 (89)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEECC
Confidence            99998754

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.38  E-value=1.5e-06  Score=54.61  Aligned_cols=32  Identities=19%  Similarity=0.430  Sum_probs=24.7

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      +..+.+.+|++|+|.|..........+.||+.
T Consensus         7 ~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq   38 (114)
T d2ak4d1           7 QTEISVVEKEDVTLDCVYETRDTTYYLFWYKQ   38 (114)
T ss_dssp             CCEEEEETTCCEEECCEEECSCSSCEEEEEEE
T ss_pred             CCeEEEeCCCCEEEEEEEcCCCcCccEEEEEc
Confidence            44567889999999998755555567899983

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.37  E-value=1.8e-06  Score=53.06  Aligned_cols=76  Identities=22%  Similarity=0.410  Sum_probs=48.4

Q ss_pred             eecceeeeecCCcEEEEEEecCC--CCCeeEEEE--CCeecC--------CCeeE-----eceE--EeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKL--DGYPLA--------GDRFV-----MGQY--MSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~~--------~~~~~-----~~~~--~~~~~~~~~~l~i~   67 (291)
                      .++....+++|++++|.|.+.+.  ....+.|++  .|+.+.        .....     ..+.  ..........|.|.
T Consensus         5 ~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~   84 (115)
T d1f3dh1           5 QQSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLN   84 (115)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeee
Confidence            34455678999999999999873  234589987  333221        11110     0111  11223345679999


Q ss_pred             ecCCCCCeEEEEEEe
Q psy14540         68 SVRVEDSGIYQCTAT   82 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~   82 (291)
                      +++.+|++.|.|.-.
T Consensus        85 ~l~~eDtAvYYCAr~   99 (115)
T d1f3dh1          85 SLTFEDSAVYYCAND   99 (115)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ecCcCCcEEEEEecc
Confidence            999999999999754

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=2.2e-06  Score=52.86  Aligned_cols=31  Identities=19%  Similarity=0.453  Sum_probs=24.2

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|.. .......+.||+.
T Consensus         7 P~~l~~~~G~svtl~C~~-s~~~~~~~~WYrq   37 (106)
T d1a0ql1           7 PSSLSASLGGKVTITCKA-SQDIKKYIGWYQH   37 (106)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEc-CCCCCCCeEEEEC
Confidence            445778899999999987 4555557999983

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=2.3e-06  Score=51.96  Aligned_cols=33  Identities=36%  Similarity=0.548  Sum_probs=26.6

Q ss_pred             cCCCceEEEEEeeCCCCC-ceeEEeECCEeccCC
Q psy14540        119 HSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD  151 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~  151 (291)
                      ..|+.++|.|.+.+.+|. ..++|.+||..+...
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~   49 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKV   49 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTC
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCc
Confidence            357889999999766774 589999999988654

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.35  E-value=4.4e-06  Score=50.87  Aligned_cols=80  Identities=23%  Similarity=0.385  Sum_probs=48.9

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~   76 (291)
                      .|.+.+-+.. .+..|+..+|.|.+.+ .| ...|.|.+||..+.......  .....+.   ..+.|.|   ...+...
T Consensus         4 ~P~v~v~~~~-p~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~--~~~~~dgty~~~S~L~v---~~~~~~~   77 (103)
T d1hdma1           4 FPIAEVFTLK-PLEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTF--VSAVDGLSFQAFSYLNF---TPEPSDI   77 (103)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEE--EEEETTTEEEEEEEEEE---CCCTTCC
T ss_pred             CCeEEEECCC-chhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEece--EEeCCCCcEEEEEEEEE---ecCCCCE
Confidence            5666543322 3567899999999998 44 56799999998876322211  1112222   2244444   4445557


Q ss_pred             EEEEEeCCCCc
Q psy14540         77 YQCTATNRVGS   87 (291)
Q Consensus        77 y~C~~~~~~~~   87 (291)
                      |+|.+.+....
T Consensus        78 ytC~V~H~~l~   88 (103)
T d1hdma1          78 FSCIVTHEPDR   88 (103)
T ss_dssp             EEEEEEETTTT
T ss_pred             EEEEEEeCCCC
Confidence            99999976543

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=8.3e-07  Score=56.40  Aligned_cols=30  Identities=23%  Similarity=0.493  Sum_probs=24.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      |..+.+.+|++++|.|.+ .+.....+.||+
T Consensus         8 P~~~~~~~G~~vtL~C~~-~~~~~~~v~Wyr   37 (122)
T d1nezg_           8 PKKMDAELGQKVDLVCEV-LGSVSQGCSWLF   37 (122)
T ss_dssp             SSCEEECTTCCEEEEEEE-ESCCSSCEEEEE
T ss_pred             CCEEEECCCCCEEEEEEE-cCccCCCEEEEE
Confidence            445778899999999998 456677899998

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=1.9e-06  Score=53.07  Aligned_cols=31  Identities=19%  Similarity=0.593  Sum_probs=24.1

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|.. .......+.||+.
T Consensus         8 P~slsv~~G~svtl~C~~-s~~~~~~~~WYrQ   38 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMT-STDIDDDMNWYQQ   38 (106)
T ss_dssp             CSEEECCTTCCEEEEEEE-SSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEe-CCCCCccEEEEeC
Confidence            445778899999999987 4445567999974

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=1.8e-06  Score=53.34  Aligned_cols=87  Identities=17%  Similarity=0.255  Sum_probs=48.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|++++|.|.. .......+.||+....  ....            +.+.....            .......
T Consensus         8 p~~l~v~~G~~vtL~C~~-~~~~~~~~~WYrq~~g--~~~~------------~l~~~~~~------------~~~~~~~   60 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSH--ESPR------------LLIKYASQ------------SISGIPS   60 (107)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTT--SCCE------------EEEETTTE------------ECTTSCT
T ss_pred             CCeEEECCCCCEEEEEEe-cCCCCcceEEEEeCCC--CccE------------EeeecccC------------CCceeCC
Confidence            455788999999999987 4445567999984310  0000            11110000            0000111


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                      .+..........|.|.++..+|+|.|-|.+.+..
T Consensus        61 ~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   94 (107)
T d1j1pl_          61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQANSW   94 (107)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             cceecccCCEEEEEEcccCcCCCEEEEEEcCCCC
Confidence            2233334445678888888888888888766443

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9.3e-07  Score=54.19  Aligned_cols=73  Identities=22%  Similarity=0.429  Sum_probs=45.5

Q ss_pred             CCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540        120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  198 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~  198 (291)
                      .++.++|.|.+.+.+|. ..|.|.+||..+......              .....+..|.|..                 
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t--------------~~~~~~~dgtys~-----------------   67 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMET--------------TQPSKQSNNKYMA-----------------   67 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE--------------CCCEECTTSCEEE-----------------
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEe--------------cccEEcCCCCEEE-----------------
Confidence            35678999999777774 589999999887543110              0011122344543                 


Q ss_pred             eccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        199 NEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       199 ~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                         .+.|.|..-..+....|+|.|.+..
T Consensus        68 ---~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          68 ---SSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             ---EEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             ---EEEEEECHHHhCCCCEEEEEEEECC
Confidence               3456666555566777888887754

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=1.7e-06  Score=51.53  Aligned_cols=31  Identities=29%  Similarity=0.455  Sum_probs=24.8

Q ss_pred             CCCceEEEEEeeCCCCC-ceeEEeECCEeccC
Q psy14540        120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILS  150 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~  150 (291)
                      .+..++|.|.+.+.+|. ..++|.+||..+..
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~   45 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGS   45 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCc
Confidence            34578999999776774 58999999988754

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=2.3e-06  Score=52.88  Aligned_cols=32  Identities=16%  Similarity=0.462  Sum_probs=24.8

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      .|..+.+.+|++++|.|.. .......+.||+.
T Consensus         7 sP~~l~v~~G~svtl~C~~-s~~~~~~~~WYrq   38 (107)
T d1kcvl1           7 SPKSMGMSVGEAVTLNCKA-SENVGTYVSWYQQ   38 (107)
T ss_dssp             SCSEEEEETTCCEEEEEEE-SSCCTTCEEEEEE
T ss_pred             cCCEEeECCCCCEEEEEEe-cCCcCCceEEEEc
Confidence            3455778899999999998 4445557999984

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=2.6e-06  Score=52.52  Aligned_cols=32  Identities=28%  Similarity=0.534  Sum_probs=24.6

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      .|..+.+.+|++++|.|.. .......+.||+.
T Consensus         7 sP~~ltv~~G~svtl~C~~-s~~~~~~~~WYrQ   38 (107)
T d1ospl1           7 SSSSFSVSLGDRVTITCKA-SEDIYSRLAWYQQ   38 (107)
T ss_dssp             CCSEEEECTTCCEEEEEEE-SSCCTTCEEEEEE
T ss_pred             eCCEEEECCCCCEEEEEec-CCCcccccEEEEc
Confidence            3456788999999999988 3444457999983

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.32  E-value=2.5e-07  Score=56.82  Aligned_cols=83  Identities=16%  Similarity=0.255  Sum_probs=50.3

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.+.+-+.......++.++|.|.+.+ .| ...|+|.++|......... .......+  ...+.|.|..-.+.....|
T Consensus         4 ~P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~-~~~~~~dgtys~~S~L~v~~~~W~~~~~y   82 (102)
T d1igtb4           4 APQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT-EPVLDSDGSYFMYSKLRVEKKNWVERNSY   82 (102)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC-CCEECTTSCEEEEEEEEEEHHHHHTCCCE
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEc-cceeCCCCcEEEEEEEEECHHHcCCCCEE
Confidence            465543332222335788999999988 44 4679999999875532211 11111111  2346677776665556689


Q ss_pred             EEEEeCCC
Q psy14540         78 QCTATNRV   85 (291)
Q Consensus        78 ~C~~~~~~   85 (291)
                      +|.+.+..
T Consensus        83 tC~V~H~~   90 (102)
T d1igtb4          83 SCSVVHEG   90 (102)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998765

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.31  E-value=4.1e-06  Score=51.44  Aligned_cols=77  Identities=21%  Similarity=0.425  Sum_probs=50.1

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------CCeeE-----eceE--EeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------GDRFV-----MGQY--MSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~~~~~-----~~~~--~~~~~~~~~~l~i~   67 (291)
                      .++....+.+|++++|.|.+.+..  ...+.|++  .|+.++        .....     ..+.  ..........|.|.
T Consensus         5 ~esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~   84 (117)
T d1iqdb1           5 VQSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELS   84 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeec
Confidence            455567789999999999998743  34588987  333221        11100     0111  11234455679999


Q ss_pred             ecCCCCCeEEEEEEeC
Q psy14540         68 SVRVEDSGIYQCTATN   83 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~~   83 (291)
                      +++.+|++.|.|....
T Consensus        85 ~L~~eDtAvYYCA~~~  100 (117)
T d1iqdb1          85 SLRSDDTAVYYCAVPD  100 (117)
T ss_dssp             SCCGGGCEEEEEEECS
T ss_pred             ccCcCcceEEEEeEcC
Confidence            9999999999998653

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.31  E-value=4.2e-06  Score=52.04  Aligned_cols=32  Identities=16%  Similarity=0.487  Sum_probs=23.7

Q ss_pred             CcceeecCCCceEEEEEeeCC-CCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKG-DPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|..... .....+.||+.
T Consensus         6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq   38 (112)
T d1sq2n_           6 PRSVTKETGESLTINCVLRDASYALGSTCWYRK   38 (112)
T ss_dssp             CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCceEEEEe
Confidence            345678899999999987332 34568999983

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=5.9e-06  Score=50.59  Aligned_cols=73  Identities=27%  Similarity=0.468  Sum_probs=49.9

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-----------------CCeeEeceEEeeccceEEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-----------------GDRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~   65 (291)
                      .+.....+.+|++++|.|.+.+..  ...+.|++  .|+.+.                 .+++.+.   .........|+
T Consensus         5 ~eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS---~D~s~n~~~L~   81 (117)
T d1c5db1           5 LESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSIN---RDTSKSQVFLK   81 (117)
T ss_dssp             EEECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEE---EETTTTEEEEE
T ss_pred             eeECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEe---cccccceeecc
Confidence            345556789999999999998743  34588987  343321                 1122221   12344567899


Q ss_pred             EeecCCCCCeEEEEEEe
Q psy14540         66 ISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~   82 (291)
                      |.+++.+|++.|.|.-.
T Consensus        82 ~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          82 MNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             ECSCCGGGCEEEEEEEC
T ss_pred             ccccccCcceEEEEecc
Confidence            99999999999999643

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=5.1e-07  Score=56.11  Aligned_cols=84  Identities=17%  Similarity=0.353  Sum_probs=54.0

Q ss_pred             CCccee-ecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEe--ecc----ceEEEEEEeecCCC
Q psy14540          2 HPQLIY-KFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMS--LHG----DVISHVNISSVRVE   72 (291)
Q Consensus         2 ~p~~~~-~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~--~~~----~~~~~l~i~~~~~~   72 (291)
                      +|.+.+ .|....+..++.++|.|.+.+ .| ...|.|++||+.+............  ..+    ...+.|.|..-.+.
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            676654 344445677899999999988 44 4579999999988733222111111  111    23466777766655


Q ss_pred             CCeEEEEEEeCCC
Q psy14540         73 DSGIYQCTATNRV   85 (291)
Q Consensus        73 d~G~y~C~~~~~~   85 (291)
                      ....|+|.|.+..
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            5669999998755

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.31  E-value=3.9e-06  Score=52.37  Aligned_cols=32  Identities=13%  Similarity=0.422  Sum_probs=24.1

Q ss_pred             CcceeecCCCceEEEEEeeCC-CCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKG-DPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~  144 (291)
                      |..+.+.+|++++|.|..... .....+.||+.
T Consensus         7 P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq   39 (113)
T d1vesa_           7 PRTATKETGESLTINCVLRDASFELKDTGWYRT   39 (113)
T ss_dssp             CSEEEECTTCCEEEEEEEESCSSCCCEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCCcccCCccceeee
Confidence            445778899999999988533 34567999973

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.31  E-value=2.1e-06  Score=53.99  Aligned_cols=31  Identities=19%  Similarity=0.287  Sum_probs=24.8

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      +..+.+.+|+.++|.|..........+.||+
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyr   37 (116)
T d1tvda_           7 SPDQTVASGSEVVLLCTYDTVYSNPDLFWYR   37 (116)
T ss_dssp             SCCEEEETTCCEEECCEEECCSSSCCEEEEE
T ss_pred             CCCEEEcCCCCEEEEEEEcCCccCCcEEEEE
Confidence            4457788999999999875455567899997

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.31  E-value=1.2e-06  Score=54.31  Aligned_cols=76  Identities=17%  Similarity=0.372  Sum_probs=49.3

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------CCeeE-----ece--EEeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------GDRFV-----MGQ--YMSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~~~~~-----~~~--~~~~~~~~~~~l~i~   67 (291)
                      .++....+++|++++|.|.+.+..  ...+.|++  .|+.+.        .....     ..+  ...........|+|.
T Consensus         5 ~qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~   84 (120)
T d1pg7x1           5 QQSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELV   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEcccc
Confidence            345556789999999999998643  34588988  343221        10000     001  112234455779999


Q ss_pred             ecCCCCCeEEEEEEe
Q psy14540         68 SVRVEDSGIYQCTAT   82 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~   82 (291)
                      +++.+|++.|.|.-.
T Consensus        85 ~l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          85 RLTSNDSAVYYCARE   99 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEeeec
Confidence            999999999999754

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.30  E-value=2.6e-06  Score=53.50  Aligned_cols=32  Identities=22%  Similarity=0.432  Sum_probs=24.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      +..+.+.+|++|+|.|..........+.||+.
T Consensus         6 p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ   37 (115)
T d1fo0a_           6 QTSISVMEKTTVTMDCVYETQDSSYFLFWYKQ   37 (115)
T ss_dssp             CCEEEEETTCCEEECCEECCCCSSCEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEe
Confidence            34578889999999998744455567899983

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.30  E-value=2.6e-06  Score=51.67  Aligned_cols=34  Identities=26%  Similarity=0.527  Sum_probs=27.3

Q ss_pred             ecCCCceEEEEEeeCCCC-CceeEEeECCEeccCC
Q psy14540        118 VHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSD  151 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  151 (291)
                      +..|+..+|.|.+.+.+| ...++|++||..+...
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~   48 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADG   48 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSS
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCC
Confidence            346788999999977677 5799999999887643

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.29  E-value=2.2e-06  Score=53.01  Aligned_cols=73  Identities=23%  Similarity=0.379  Sum_probs=49.2

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------C----------CeeEeceEEeeccceEEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------G----------DRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~----------~~~~~~~~~~~~~~~~~~l~   65 (291)
                      ++.....+++|++++|.|.+.+..  ...+.|++  .|+.+.       .          +++.+.   .........|.
T Consensus         5 ~esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS---~D~s~nt~~L~   81 (120)
T d1dn0b1           5 QQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTIS---VDTSKNQFSLK   81 (120)
T ss_dssp             EEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEE---EETTTTEEEEE
T ss_pred             EeECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEe---ccCchheeccc
Confidence            345556799999999999998743  34588987  333221       1          122221   12344557799


Q ss_pred             EeecCCCCCeEEEEEEe
Q psy14540         66 ISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~   82 (291)
                      |.+++.+|++.|.|.-.
T Consensus        82 i~~l~~eDtA~YYCAr~   98 (120)
T d1dn0b1          82 LSSVTAADTAVYYCARP   98 (120)
T ss_dssp             ECSCCGGGCEEEEEEEC
T ss_pred             ccccccccccEEEEEee
Confidence            99999999999999543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.29  E-value=2.3e-06  Score=53.55  Aligned_cols=75  Identities=20%  Similarity=0.418  Sum_probs=51.1

Q ss_pred             ceeecceeeeecCCcEEEEEEecCC--CCCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~   62 (291)
                      ++.++....+++|+++.|.|.+.+.  ....+.|++  .|+.++        .          +++.+   .........
T Consensus         2 ~L~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~ti---s~D~s~~tv   78 (130)
T d1rhhb1           2 LLEQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTF---TADQATSTA   78 (130)
T ss_dssp             CEEECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEE---EEETTTTEE
T ss_pred             CEeccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEE---eccCCccEE
Confidence            3456667789999999999999873  344588987  333221        0          11111   112334457


Q ss_pred             EEEEeecCCCCCeEEEEEEe
Q psy14540         63 HVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~   82 (291)
                      .|++.+++.+|++.|.|.-.
T Consensus        79 ~L~~~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          79 YMELTNLRSDDTAVYYCARD   98 (130)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EEEeeccCCCCcEEEEEEee
Confidence            79999999999999999754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.1e-06  Score=52.17  Aligned_cols=32  Identities=28%  Similarity=0.465  Sum_probs=26.3

Q ss_pred             cCCCceEEEEEeeCCCCC-ceeEEeECCEeccC
Q psy14540        119 HSGDRAGVQCLVTKGDPP-LTISWLKNGLPILS  150 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~  150 (291)
                      ..|+..+|.|.+.+.+|. ..++|.+||..+..
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~   49 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEK   49 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTT
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCC
Confidence            468888999999766774 58999999998854

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.29  E-value=1.5e-06  Score=52.66  Aligned_cols=72  Identities=26%  Similarity=0.488  Sum_probs=48.6

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC------C--------------CeeEeceEEeeccceEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA------G--------------DRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~------~--------------~~~~~~~~~~~~~~~~~   62 (291)
                      .+.....+++|++++|.|.+.+..  ...+.|++  .|+.++      .              +++.+   .........
T Consensus         5 ~eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~ti---S~D~s~~t~   81 (109)
T d2ck0h1           5 QESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTI---SRDDSQSML   81 (109)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEE---EEETTTTEE
T ss_pred             EeECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCcee---cccccccee
Confidence            345566799999999999998733  34588987  332211      0              11111   112334557


Q ss_pred             EEEEeecCCCCCeEEEEEE
Q psy14540         63 HVNISSVRVEDSGIYQCTA   81 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~   81 (291)
                      .|.|.+++.+|++.|.|.-
T Consensus        82 ~L~i~sL~~eDTAvYYCAr  100 (109)
T d2ck0h1          82 YLQMNNLKTEDTGIYYCVR  100 (109)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EecccCCCHhHCEEEEEEE
Confidence            7999999999999999974

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=9.1e-07  Score=54.93  Aligned_cols=80  Identities=14%  Similarity=0.305  Sum_probs=49.6

Q ss_pred             eecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540        117 KVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN  195 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  195 (291)
                      .+..++.++|.|.+.+.+|. ..|.|++||+.+.........          .........|.|..              
T Consensus        16 e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~----------~~~~~~~~~gtys~--------------   71 (108)
T d1ow0a2          16 ELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWA----------SRQEPSQGTTTFAV--------------   71 (108)
T ss_dssp             TTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECC----------CEECSCSSSCCEEE--------------
T ss_pred             HhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEccc----------ceecccCCCCcEEE--------------
Confidence            34567889999999776774 489999999988654322110          11111233444543              


Q ss_pred             EEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                            .+.|.|..-..+.+..|+|.|.+..
T Consensus        72 ------~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          72 ------TSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             ------EEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             ------EEEEEEcHHHhCCCCEEEEEEEeCC
Confidence                  2345555555556677888887754

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.28  E-value=2.5e-06  Score=52.46  Aligned_cols=76  Identities=22%  Similarity=0.408  Sum_probs=49.5

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------CCeeEe------c-eEEeeccceEEEEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------GDRFVM------G-QYMSLHGDVISHVNI   66 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~~~~~~------~-~~~~~~~~~~~~l~i   66 (291)
                      +.++....+.+|++++|.|.+.+..  ...+.|++  .|+.++        ......      . ............|+|
T Consensus         4 L~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i   83 (117)
T d1mfah1           4 VQQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMEL   83 (117)
T ss_dssp             EEECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             EEeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeee
Confidence            3456667889999999999998733  34588887  343221        111000      0 111123345567999


Q ss_pred             eecCCCCCeEEEEEE
Q psy14540         67 SSVRVEDSGIYQCTA   81 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~   81 (291)
                      .+++.+|++.|.|.-
T Consensus        84 ~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          84 SSLTSEDSAVYYCTR   98 (117)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEec
Confidence            999999999999964

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=6e-06  Score=50.88  Aligned_cols=31  Identities=10%  Similarity=0.417  Sum_probs=24.0

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|... ......+.||+.
T Consensus         8 P~~l~~~~G~svtL~C~~s-~~~~~~~~WYrq   38 (108)
T d1jhll_           8 PSYLVASPGETITINCRAS-KSISKSLAWYQE   38 (108)
T ss_dssp             CSEEEECTTSCEEEEEEES-SCCTTCEEEEEE
T ss_pred             CCeEEecCCCCEEEEEEcc-CCcCCceEEEEc
Confidence            3457788999999999984 445567999983

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=5.4e-07  Score=55.15  Aligned_cols=81  Identities=20%  Similarity=0.298  Sum_probs=50.2

Q ss_pred             CCccee-ecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc---ceEEEEEEeecCCCCCe
Q psy14540          2 HPQLIY-KFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG---DVISHVNISSVRVEDSG   75 (291)
Q Consensus         2 ~p~~~~-~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G   75 (291)
                      +|.+.+ .|... ....+.++|.|.+.+ .| ...|.|+++|..+..... ... ....+   ...+.|.|..-.+....
T Consensus         3 ~P~V~i~~ps~~-~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~-~~~-~~~~dgtys~~S~L~v~~~~w~~~~   79 (101)
T d1cqka_           3 APQVYTIPPPLE-QMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKN-TQP-IMDTDGSYFVYSKLNVQKSNWEAGN   79 (101)
T ss_dssp             CCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEE-CCC-EECTTSCEEEEEEEEEEHHHHHTTC
T ss_pred             CCEEEEECCCHH-HHCCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEE-eee-ecCCCCcEEEEEEEEECHHHhCCCC
Confidence            455543 34332 234677999999998 34 567999999987763221 111 11122   23466777666555566


Q ss_pred             EEEEEEeCCC
Q psy14540         76 IYQCTATNRV   85 (291)
Q Consensus        76 ~y~C~~~~~~   85 (291)
                      .|+|.+.+..
T Consensus        80 ~ytC~V~H~~   89 (101)
T d1cqka_          80 TFTCSVLHEG   89 (101)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEEEEECC
Confidence            8999998764

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.27  E-value=4.5e-06  Score=52.58  Aligned_cols=31  Identities=19%  Similarity=0.398  Sum_probs=24.4

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      +....+.+|+.++|.|.. .+.....+.||+.
T Consensus         8 P~~~~~~~G~~v~L~C~~-~~~~~~~~~WYrQ   38 (118)
T d2ij0c1           8 PSMVIVKSGTSVKIECRS-LDTNIHTMFWYRQ   38 (118)
T ss_dssp             CSEEEECTTCCEEEEEEE-CSSCCSEEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEE-cCCcccEEEEEEE
Confidence            345678899999999997 4555678999983

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.27  E-value=2.3e-06  Score=52.93  Aligned_cols=74  Identities=23%  Similarity=0.430  Sum_probs=50.2

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVISH   63 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~~   63 (291)
                      ..++....+++|++++|.|.+.+..  ...+.|++  .|+.++        .          +++.+   ..........
T Consensus         5 l~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~ti---S~D~s~ntvy   81 (122)
T d1vgeh1           5 LEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTF---TRDTSATTAY   81 (122)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEE---EEETTTTEEE
T ss_pred             eEecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEE---eccCCcceee
Confidence            3456777899999999999998743  34588987  333221        1          11111   1123344567


Q ss_pred             EEEeecCCCCCeEEEEEEe
Q psy14540         64 VNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~~   82 (291)
                      |.|.+++.+|++.|.|...
T Consensus        82 L~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          82 MGLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             EEECSCCGGGCEEEEEEEE
T ss_pred             ecccccCCCcceEEEEeec
Confidence            9999999999999999754

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.8e-06  Score=51.97  Aligned_cols=31  Identities=19%  Similarity=0.242  Sum_probs=23.8

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      ..+..|++|+|.|.. .......+.|+|+|..
T Consensus        14 ~~V~~G~~VTL~C~~-~~~~~~~f~L~k~g~~   44 (96)
T d1ucta2          14 LVLMPGENISLTCSS-AHIPFDRFSLAKEGEL   44 (96)
T ss_dssp             SEECTTCCCEEEEEC-SSSCCSEEEEEETTCS
T ss_pred             CccCCCCeEEEEEeC-CCCCceEEEEEECCcc
Confidence            367899999999986 2334457999998854

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.27  E-value=3e-06  Score=51.77  Aligned_cols=73  Identities=23%  Similarity=0.435  Sum_probs=49.8

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------CC----------eeEeceEEeeccceEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------GD----------RFVMGQYMSLHGDVISH   63 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~~----------~~~~~~~~~~~~~~~~~   63 (291)
                      +.++....+.+|+++.|.|.+.+..  ...+.|++  .|+.++        ..          ++.+   ..........
T Consensus         4 L~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~ti---S~D~s~~tvy   80 (116)
T d1mjuh1           4 LQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATL---TVDTSSSTAY   80 (116)
T ss_dssp             EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEE---EEETTTTEEE
T ss_pred             EeeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeE---ecccccceeE
Confidence            3456677899999999999998743  34578887  333221        11          1111   1223445577


Q ss_pred             EEEeecCCCCCeEEEEEE
Q psy14540         64 VNISSVRVEDSGIYQCTA   81 (291)
Q Consensus        64 l~i~~~~~~d~G~y~C~~   81 (291)
                      |.+.+++.+|++.|.|.-
T Consensus        81 L~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          81 MQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             EEECSCCGGGCEEEEEEE
T ss_pred             ecccccCCCCceEEEEcc
Confidence            999999999999999964

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.27  E-value=3e-06  Score=52.18  Aligned_cols=31  Identities=23%  Similarity=0.511  Sum_probs=24.4

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |..+.+.+|++++|.|.. .......+.||+.
T Consensus         8 P~s~~~~~G~svtl~C~~-s~~~~~~~~Wyrq   38 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRT-SQEISGYLSWLQQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEe-CCCCCCCEEEEEc
Confidence            445778899999999997 4555667999983

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=5.3e-06  Score=49.83  Aligned_cols=32  Identities=19%  Similarity=0.499  Sum_probs=26.3

Q ss_pred             CCCceEEEEEeeCCCCC-ceeEEeECCEeccCC
Q psy14540        120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD  151 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~  151 (291)
                      .|+.++|.|.+.+.+|. ..|+|.+||..+...
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~   46 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPE   46 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCc
Confidence            57789999999777875 699999999887543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.27  E-value=2.7e-06  Score=52.13  Aligned_cols=76  Identities=14%  Similarity=0.268  Sum_probs=49.9

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------CCeeEe-----c--eEEeeccceEEEEEEee
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------GDRFVM-----G--QYMSLHGDVISHVNISS   68 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~~~~~~-----~--~~~~~~~~~~~~l~i~~   68 (291)
                      .+.....+++|++++|.|.+.+..  ...+.|++  .|+.+.       ......     .  ............|+|.+
T Consensus         5 ~esG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~   84 (116)
T d1a2yb_           5 QESGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNS   84 (116)
T ss_dssp             EEECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred             EeECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceee
Confidence            345556789999999999998733  44588987  333221       111100     0  11122345567899999


Q ss_pred             cCCCCCeEEEEEEe
Q psy14540         69 VRVEDSGIYQCTAT   82 (291)
Q Consensus        69 ~~~~d~G~y~C~~~   82 (291)
                      ++.+|++.|.|.-.
T Consensus        85 l~~eDTAvYYCAr~   98 (116)
T d1a2yb_          85 LHTDDTARYYCARE   98 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eeeccceEEEEEEe
Confidence            99999999999754

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.26  E-value=3.9e-06  Score=51.67  Aligned_cols=31  Identities=13%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|.. .......+.||+.
T Consensus         7 P~sl~~~~G~svtL~C~~-~~~~~~~~~WYrq   37 (106)
T d1op3k1           7 PSTLSASVGDTITITCRA-SQSIETWLAWYQQ   37 (106)
T ss_dssp             CSEEEECTTCEEEEEEEE-SSCCTTCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEe-CCCCCCcEEEEec
Confidence            455788999999999987 4545567999984

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.25  E-value=6.7e-08  Score=59.70  Aligned_cols=85  Identities=12%  Similarity=0.185  Sum_probs=50.8

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.+.+-+....-..++.++|.|.+.+ .| ...|.|.+||+.+......... ....+  ...+.|.|....+.+...|
T Consensus         5 ~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~-~~~~~tys~~S~l~v~~~~w~~~~~y   83 (104)
T d1nfde2           5 SPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP-SKQGQNYMTSSYLSLTADQWKSHNRV   83 (104)
T ss_dssp             CCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC-BCSSSCEEEEEBCCEEHHHHHTCSCE
T ss_pred             CCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccc-cCCCceEEEEEEEEEcHHHcCCCCEE
Confidence            565544332221224677999999988 44 4689999999987733221111 11111  2245566666666666789


Q ss_pred             EEEEeCCCCc
Q psy14540         78 QCTATNRVGS   87 (291)
Q Consensus        78 ~C~~~~~~~~   87 (291)
                      +|.+.+....
T Consensus        84 tC~V~H~~~~   93 (104)
T d1nfde2          84 SCQVTHEGET   93 (104)
T ss_dssp             EEEEECTTTT
T ss_pred             EEEEEECCCc
Confidence            9999976544

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.25  E-value=1.7e-06  Score=53.86  Aligned_cols=74  Identities=16%  Similarity=0.268  Sum_probs=46.8

Q ss_pred             cceeeeecCCcEEEEEEecCC----CCCeeEEEE--CCeecC-------CCeeE-----eceEEe--eccceEEEEEEee
Q psy14540          9 FIQQTLQPGPPVSLKCIATGN----PTPHISWKL--DGYPLA-------GDRFV-----MGQYMS--LHGDVISHVNISS   68 (291)
Q Consensus         9 ~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~--~~~~~~-------~~~~~-----~~~~~~--~~~~~~~~l~i~~   68 (291)
                      +....+++|++|+|.|.+.+.    ....+.|++  .|+.+.       .....     ..++..  ........|+|.+
T Consensus         7 sg~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~   86 (120)
T d2agjh1           7 SGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTN   86 (120)
T ss_dssp             CCCSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEES
T ss_pred             ECCeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEe
Confidence            344568999999999998752    224588997  333221       00000     011111  1233457899999


Q ss_pred             cCCCCCeEEEEEEe
Q psy14540         69 VRVEDSGIYQCTAT   82 (291)
Q Consensus        69 ~~~~d~G~y~C~~~   82 (291)
                      ++.+|++.|.|.-.
T Consensus        87 l~~eDsAvYyCAr~  100 (120)
T d2agjh1          87 LDPVDTATYYCART  100 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eeeccceEEeeEec
Confidence            99999999999743

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.24  E-value=1.5e-06  Score=52.41  Aligned_cols=77  Identities=10%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccce---EEEEEEeecCCCCCeE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDV---ISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~   76 (291)
                      +|.+.+...+  ...++.++|.|.+.+ .| ...|+|++++..+....... . ....+..   .+.|.|..   .|...
T Consensus         3 ~P~V~l~~~~--~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~-~-~~~~dgty~~~S~L~v~~---~~~~~   75 (96)
T d2h26a1           3 KPEAWLSSGP--SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGD-I-LPNANWTWYLRATLDVAD---GEAAG   75 (96)
T ss_dssp             CCEEEEEEES--CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECC-C-EECTTSCEEEEEEEEEEG---GGCTT
T ss_pred             CCEEEEEcCC--CCCCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCc-c-EeCCCCcEEEEEEEEEeC---ccCCE
Confidence            4655554433  345678999999998 55 44799999998776332211 1 1122222   24455543   45558


Q ss_pred             EEEEEeCCC
Q psy14540         77 YQCTATNRV   85 (291)
Q Consensus        77 y~C~~~~~~   85 (291)
                      |+|.+.+..
T Consensus        76 ytC~V~H~s   84 (96)
T d2h26a1          76 LSCRVKHSS   84 (96)
T ss_dssp             EEEEEEEGG
T ss_pred             EEEEEEeCC
Confidence            999998754

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.24  E-value=1.1e-05  Score=48.84  Aligned_cols=31  Identities=13%  Similarity=0.143  Sum_probs=24.6

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI  148 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~  148 (291)
                      ..+..|++|+|.|..  ..+...+.|+|+|...
T Consensus        15 ~~V~~G~~VTL~C~~--~~~~~~f~L~k~g~~~   45 (99)
T d1nkra2          15 PTVLAGENVTLSCSS--RSSYDMYHLSREGEAH   45 (99)
T ss_dssp             SEECTTCEEEEEEEE--SSCCSEEEEEETTCSS
T ss_pred             CcccCCCeEEEEECC--CCCccEEEEEECCCcc
Confidence            467899999999987  4456789999988543

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=9.6e-07  Score=54.22  Aligned_cols=72  Identities=24%  Similarity=0.403  Sum_probs=48.2

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeec------C--C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPL------A--G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~------~--~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      ++.....+.+|++++|.|.+.+..  ...+.|++  .|+.+      .  .          +++.+   ..........|
T Consensus         5 ~esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRfti---srD~s~~tvyL   81 (118)
T d1nlbh1           5 VQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAF---SLETSASTAYL   81 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEE---EEEGGGTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEE---EecCCceeEEe
Confidence            345556789999999999998743  34588987  33321      1  1          11111   11233455779


Q ss_pred             EEeecCCCCCeEEEEEE
Q psy14540         65 NISSVRVEDSGIYQCTA   81 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~   81 (291)
                      ++.+++.+|++.|.|.-
T Consensus        82 ~~~~L~~eDtAvYYCAr   98 (118)
T d1nlbh1          82 QINSLKNEDTATYFCAR   98 (118)
T ss_dssp             EECSCCGGGCEEEEEEE
T ss_pred             eeeecccCcceEEEEee
Confidence            99999999999999963

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.24  E-value=5e-06  Score=51.21  Aligned_cols=73  Identities=22%  Similarity=0.348  Sum_probs=49.5

Q ss_pred             eecceeeeecCCcEEEEEEecCCCC---CeeEEEE--CCeecC-------C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNPT---PHISWKL--DGYPLA-------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~--~~~~~~-------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .+.....+++|++++|.|.+.+...   ..+.|+|  .|+.++       .          +++.+   ..+.......|
T Consensus         5 ~esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~Ti---S~D~s~nt~~L   81 (119)
T d1ncwh1           5 QQSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISI---TRDTSKNQFFL   81 (119)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEE---EEETTTTEEEE
T ss_pred             EeECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceE---ecccccceeec
Confidence            4456678999999999999988443   2478987  443321       1          11111   12234455779


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      .+.+++.+|++.|.|...
T Consensus        82 ~~~sL~~eDTAvYYCAr~   99 (119)
T d1ncwh1          82 QLNSVTTEDTATYYCAGL   99 (119)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             cccccccCCceEEEEeEe
Confidence            999999999999999643

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=4.4e-06  Score=51.48  Aligned_cols=84  Identities=15%  Similarity=0.208  Sum_probs=47.7

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      ..+.+.+|+.++|.|.. .+.....+.||+....  ....            +.+........            .....
T Consensus         8 ~s~~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g--~~~~------------~l~~~~~~~~~------------~~~~~   60 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKA-SESVTSRMHWYQQKPG--QQPK------------LLIYKASNLAS------------GVPAR   60 (106)
T ss_dssp             SEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTT--SCCE------------EEEETTTEECT------------TCCTT
T ss_pred             CeEEECCCCCEEEEEEe-CCCCCccEEEEecCCC--CCcE------------EEEEecccccC------------CcCCc
Confidence            34788899999999998 4555567999973210  0000            11111100000            01122


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      +..........|.|.++.++|+|.|-|.+..
T Consensus        61 f~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          61 FSGSGSGTDFTLTIDPVEADDTAIYFCQQSW   91 (106)
T ss_dssp             EEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             eeeecCCCEEEeEECCcChhhCCCccccccc
Confidence            3333344456788888888888888886653

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.23  E-value=5e-06  Score=51.25  Aligned_cols=32  Identities=16%  Similarity=0.500  Sum_probs=24.2

Q ss_pred             CCcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      .+..+.+.+|+.++|.|.. .......+.||+.
T Consensus         7 ~p~~l~~~~G~svtl~C~~-s~~~~~~~~WYrQ   38 (107)
T d1mexl1           7 SQKFMSTSLGNRVSVTCKA-SQNVGTNVAWFQQ   38 (107)
T ss_dssp             CCSEEEECTTSCEEEEEEE-SSCCTTCEEEEEE
T ss_pred             CCCeEEECCCCCEEEEEEe-CCCCCCceEEEec
Confidence            3455778999999999987 3444457999983

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=8.1e-06  Score=48.81  Aligned_cols=31  Identities=23%  Similarity=0.517  Sum_probs=25.2

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEeccC
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILS  150 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~  150 (291)
                      .++.++|.|.+.+.+| ...++|++||+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~   45 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDA   45 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCG
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECcc
Confidence            4567899999976677 459999999999854

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=98.23  E-value=4.4e-06  Score=51.74  Aligned_cols=72  Identities=22%  Similarity=0.332  Sum_probs=48.3

Q ss_pred             ecceeeeecCCcEEEEEEecCCC----CCeeEEEE--CCeecC-------CC----------eeEeceEEeeccceEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNP----TPHISWKL--DGYPLA-------GD----------RFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~--~~~~~~-------~~----------~~~~~~~~~~~~~~~~~l   64 (291)
                      +.....+++|++++|.|.+.+..    ...+.|++  .|+.++       +.          ++.+   ..........|
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTi---SrD~s~n~~~L   82 (120)
T d1ai1h1           6 ESGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTI---SRDTSLNKFFI   82 (120)
T ss_dssp             EECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEE---EEETTTTEEEE
T ss_pred             eECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhccccee---ccccccceeec
Confidence            44556799999999999988743    23478987  333221       11          1111   11234455779


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      +|.+++.+|++.|.|.-.
T Consensus        83 ~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          83 QLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             EESSCCGGGCEEEEEEEE
T ss_pred             ceeeeeccceeEEEEEec
Confidence            999999999999999743

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=8.5e-07  Score=54.38  Aligned_cols=84  Identities=19%  Similarity=0.330  Sum_probs=50.2

Q ss_pred             CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.+.+-+........+.++|.|.+.+ .| ...|+|+++|........ ........+  ...+.|.|....+.....|
T Consensus         4 ~P~V~i~~p~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~-~~~~~~~dgt~s~~S~L~v~~~~w~~~~~y   82 (102)
T d1i1ca2           4 GPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKN-TPPTMDTDGSYFLYSKLNVKKETWQQGNTF   82 (102)
T ss_dssp             CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE-CCCEECTTSCEEEEEEEEEEHHHHHTTCCE
T ss_pred             CCEEEEECCCHHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEE-cccEeCCCCCEEEEEEEEECHHHhCCCCEE
Confidence            455544332222334578999999988 33 467999999987653211 111111111  1345677777666666689


Q ss_pred             EEEEeCCCC
Q psy14540         78 QCTATNRVG   86 (291)
Q Consensus        78 ~C~~~~~~~   86 (291)
                      +|.+.+...
T Consensus        83 tC~V~H~~~   91 (102)
T d1i1ca2          83 TCSVLHEGL   91 (102)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            999987543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.22  E-value=4e-06  Score=52.03  Aligned_cols=76  Identities=20%  Similarity=0.350  Sum_probs=49.1

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------CCeeE-----eceE--EeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------GDRFV-----MGQY--MSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~~~~~-----~~~~--~~~~~~~~~~l~i~   67 (291)
                      .++....+++|++++|.|.+.+..  ...+.|++  .|+.+.        .....     ..+.  ..........|+|.
T Consensus         5 ~esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~   84 (121)
T d1j05b_           5 QQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLT   84 (121)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeeccc
Confidence            345566799999999999988633  34588987  343221        11100     0011  11223445679999


Q ss_pred             ecCCCCCeEEEEEEe
Q psy14540         68 SVRVEDSGIYQCTAT   82 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~   82 (291)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (121)
T d1j05b_          85 SLTSEDTAVYYCAPF   99 (121)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCcCcceEEEeEee
Confidence            999999999999754

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=7.7e-07  Score=54.59  Aligned_cols=32  Identities=22%  Similarity=0.607  Sum_probs=25.1

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEeccCC
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSD  151 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  151 (291)
                      .++.++|.|.+.+.+| ...|.|.+||..+...
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~   51 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAG   51 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCC
Confidence            3667899999976566 4589999999887543

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=8.1e-06  Score=50.07  Aligned_cols=88  Identities=18%  Similarity=0.248  Sum_probs=49.3

Q ss_pred             CCcc-eeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCC--C
Q psy14540          2 HPQL-IYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVED--S   74 (291)
Q Consensus         2 ~p~~-~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d--~   74 (291)
                      +|.+ .+.|........+.++|.|.+.+ .| ...|+|.++++.+........... ..+  ...+.|.|...++..  .
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~-~~gtys~~S~L~v~~~eW~~~~~   83 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVL-RGGKYAATSQVLLPSKDVMAGTD   83 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEE-ETTEEEEEEEEEECTTCC---CC
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEc-cCCCEEEEEEEEEcHHHhccCCC
Confidence            5644 34454444556788999999998 44 467999998876653332222111 111  233556666555432  2


Q ss_pred             eEEEEEEeCCCCceee
Q psy14540         75 GIYQCTATNRVGSQTH   90 (291)
Q Consensus        75 G~y~C~~~~~~~~~~~   90 (291)
                      ..|+|.+.+..+....
T Consensus        84 ~~ytC~V~H~~~~~~~   99 (105)
T d1dn0b2          84 EHVVCKVQHPNGNKEK   99 (105)
T ss_dssp             CEEEEEEECTTCCEEE
T ss_pred             CEEEEEEEECCCCEEe
Confidence            4799999987655443

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.22  E-value=7.4e-06  Score=51.12  Aligned_cols=30  Identities=17%  Similarity=0.593  Sum_probs=23.0

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      +..+.+.+|+.++|.|... . ....+.||+.
T Consensus         8 P~~~~v~~G~~vtl~C~~~-~-~~~~~~WYrQ   37 (113)
T d1h5ba_           8 PSALSLHEGTDSALRCNFT-T-TMRSVQWFRQ   37 (113)
T ss_dssp             CSEEEEETTCCEEEEEEES-S-CCSEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEEe-c-CCccceEEEe
Confidence            3457788999999999984 3 3457999983

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5.2e-07  Score=55.39  Aligned_cols=83  Identities=19%  Similarity=0.413  Sum_probs=50.2

Q ss_pred             CCcce-eecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeE
Q psy14540          2 HPQLI-YKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~   76 (291)
                      +|.+. ..|....+ .++.++|.|.+.+ .| ...|+|++||........ ........+  ...+.|.|..-.+.....
T Consensus         4 ~P~V~i~~ps~~~~-~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~-~~~~~~~dgtys~~S~L~v~~~~w~~g~~   81 (102)
T d1l6xa2           4 EPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKT-TPPVLDSDGSFFLYSKLTVDKSRWQQGNV   81 (102)
T ss_dssp             CCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE-CCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEECcCHHHh-cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEE-cceEECCCCCEEEEEEEEECHHHcCCCCE
Confidence            45443 33433323 5778999999988 44 467999999987653221 111111111  234667777665555558


Q ss_pred             EEEEEeCCCC
Q psy14540         77 YQCTATNRVG   86 (291)
Q Consensus        77 y~C~~~~~~~   86 (291)
                      |+|.+.+...
T Consensus        82 ytC~V~H~~l   91 (102)
T d1l6xa2          82 FSCSVMHEAL   91 (102)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999997653

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.22  E-value=5.7e-07  Score=57.61  Aligned_cols=84  Identities=17%  Similarity=0.276  Sum_probs=54.2

Q ss_pred             CCccee-ecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEe-------eccceEEEEEEeecCC
Q psy14540          2 HPQLIY-KFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMS-------LHGDVISHVNISSVRV   71 (291)
Q Consensus         2 ~p~~~~-~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~   71 (291)
                      ||.+.+ .|....+..+..++|.|.+.+ .| ...|+|++||+.+............       ......+.|.|....+
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W   83 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW   83 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh
Confidence            676654 444444566788999999998 43 4569999999987644332211110       0112346788877777


Q ss_pred             CCCe-EEEEEEeCCC
Q psy14540         72 EDSG-IYQCTATNRV   85 (291)
Q Consensus        72 ~d~G-~y~C~~~~~~   85 (291)
                      .+.| .|+|.+.+..
T Consensus        84 ~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          84 QNPRNHFRCQVQFYG   98 (127)
T ss_dssp             TCTTCEEEEEEEECC
T ss_pred             CCCCCEEEEEEEECC
Confidence            7766 7999998754

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.21  E-value=4.1e-06  Score=51.35  Aligned_cols=72  Identities=24%  Similarity=0.442  Sum_probs=48.8

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .++....+++|+++.|.|.+.+..  ...+.|++  .|+.+.        .          +++.+   ..........|
T Consensus         5 ~esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTi---S~D~s~~t~yL   81 (117)
T d1jnhb1           5 QQSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATL---TADRSSSIVYL   81 (117)
T ss_dssp             EECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEE---EEETTTTEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEE---eccCccceeee
Confidence            345556789999999999999743  44588987  333221        0          12222   11233455779


Q ss_pred             EEeecCCCCCeEEEEEE
Q psy14540         65 NISSVRVEDSGIYQCTA   81 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+++.+|++.|.|.-
T Consensus        82 q~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          82 QLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             EECSCCGGGCEEEEEEE
T ss_pred             cccccCCCcceEEEEee
Confidence            99999999999999964

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=3.8e-06  Score=52.99  Aligned_cols=71  Identities=14%  Similarity=0.169  Sum_probs=42.5

Q ss_pred             eeeecCCcEEEEEEecCCC--CCe-eEEEEC-CeecC--------CCeeEe-----ceEEeeccceEEEEEEeecCCCCC
Q psy14540         12 QTLQPGPPVSLKCIATGNP--TPH-ISWKLD-GYPLA--------GDRFVM-----GQYMSLHGDVISHVNISSVRVEDS   74 (291)
Q Consensus        12 ~~v~~g~~v~l~C~~~~~~--~~~-v~W~~~-~~~~~--------~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~   74 (291)
                      ..+.+|++++|.|.+.+..  ... +.|++. +..+.        ......     ............+|+|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            5678899999999987532  222 345552 11110        000000     011122234457899999999999


Q ss_pred             eEEEEEEe
Q psy14540         75 GIYQCTAT   82 (291)
Q Consensus        75 G~y~C~~~   82 (291)
                      |.|.|.+.
T Consensus        90 avYyCa~~   97 (118)
T d1yjdc1          90 DIYFCKIE   97 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999875

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.21  E-value=2.6e-06  Score=52.23  Aligned_cols=29  Identities=24%  Similarity=0.512  Sum_probs=23.1

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      .+.+.+|+.++|.|.. .......+.||+.
T Consensus         7 sl~~~~G~svtl~C~~-~~~~~~~~~WYrQ   35 (103)
T d8faba1           7 SVSVSPGQTARITCSA-NALPNQYAYWYQQ   35 (103)
T ss_dssp             EEEECTTSCEEEEEEC-TTGGGSCCEEEEE
T ss_pred             eEEECCCCCEEEEEEe-CCCCCCCEEEEEc
Confidence            5778899999999987 4444567999984

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.21  E-value=3.4e-06  Score=52.21  Aligned_cols=34  Identities=15%  Similarity=0.435  Sum_probs=24.9

Q ss_pred             cCCcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      ..|..+.+.+|+.++|.|..........+.||+.
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq   39 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQ   39 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEE
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEec
Confidence            3345678899999999998733334557899984

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.21  E-value=2.5e-06  Score=53.08  Aligned_cols=72  Identities=22%  Similarity=0.419  Sum_probs=49.5

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .++....+++|+++.|.|.+.+..  ...+.|++  .|+.++        .          +++.+   ..........|
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~ti---S~D~s~nt~yL   81 (127)
T d1n0xh1           5 VQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTF---TADTSANTAYM   81 (127)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEE---EEEGGGTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceE---ecccCceEEEE
Confidence            466677899999999999998743  33488987  333221        1          11222   12233455779


Q ss_pred             EEeecCCCCCeEEEEEE
Q psy14540         65 NISSVRVEDSGIYQCTA   81 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~   81 (291)
                      .+.+++.+|++.|.|.-
T Consensus        82 ~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          82 ELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             EECSCCGGGCEEEEEEE
T ss_pred             EEEccCCCCceEEEEEe
Confidence            99999999999999963

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.20  E-value=1.1e-05  Score=49.93  Aligned_cols=73  Identities=26%  Similarity=0.447  Sum_probs=48.7

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeec------C--C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPL------A--G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~------~--~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      ++.....+++|++++|.|.+.+..  ...+.|++  .|+.+      .  .          +++.+   ..........|
T Consensus         5 ~esG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~ti---s~D~s~nt~~L   81 (123)
T d1mqkh_           5 QESGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTI---SRDNAKNTLYL   81 (123)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEE---EEEGGGTEEEE
T ss_pred             eeECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEE---EecCccccccc
Confidence            344556789999999999998743  34588987  33321      1  1          11111   11233455679


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      +|.+++.+|++.|.|...
T Consensus        82 ~i~~L~~eDtAvYYCAr~   99 (123)
T d1mqkh_          82 QMSSLKSEDTAMYYCVRH   99 (123)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             ceeeeccCcccceeEEec
Confidence            999999999999999754

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.20  E-value=3.3e-06  Score=51.86  Aligned_cols=75  Identities=20%  Similarity=0.364  Sum_probs=48.9

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeec------C--CCeeEe-----ce--EEeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPL------A--GDRFVM-----GQ--YMSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~------~--~~~~~~-----~~--~~~~~~~~~~~l~i~   67 (291)
                      .++....+.+|+++.|.|.+.+..  ...+.|++  .|+.+      .  ......     .+  ...........|+|.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~   84 (118)
T d2jelh1           5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence            455667789999999999998743  33588987  33321      1  111010     11  112234455779999


Q ss_pred             ecCCCCCeEEEEEE
Q psy14540         68 SVRVEDSGIYQCTA   81 (291)
Q Consensus        68 ~~~~~d~G~y~C~~   81 (291)
                      +++.+|++.|.|.-
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999953

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=98.20  E-value=4.9e-06  Score=51.18  Aligned_cols=73  Identities=26%  Similarity=0.428  Sum_probs=49.7

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .+.....+++|++++|.|.+.+..  ...+.|++  .|+.++        .          .++.+   ..........|
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~ti---s~D~s~~t~yL   81 (118)
T d1ct8b1           5 LESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARL---TVDTSSSTAYM   81 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEE---EEEGGGTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEE---EecCccceEEe
Confidence            455667899999999999998733  34588887  333221        1          11111   12334455789


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      .|.+++.+|++.|.|.-.
T Consensus        82 ~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          82 QFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             cccccCCCcceEEEEeee
Confidence            999999999999999754

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.20  E-value=3e-06  Score=52.81  Aligned_cols=73  Identities=25%  Similarity=0.472  Sum_probs=49.0

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC------------------CCeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA------------------GDRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~l   64 (291)
                      .++....+++|+++.|.|.+.+..  ...+.|++  .|+.++                  .+++.+   ..........|
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~ti---SrD~s~~t~yL   81 (127)
T d2fx7h1           5 VQSGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITI---TADRSTSTAYL   81 (127)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEE---EEETTTTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEE---eccCccceEee
Confidence            345556789999999999998732  34588987  333221                  011111   11233455779


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      ++.+++.+|++.|.|.-.
T Consensus        82 ~~~sL~~eDTavYYCAR~   99 (127)
T d2fx7h1          82 ELNSLRPEDTAVYYCARE   99 (127)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eecccCcccceEEEEeec
Confidence            999999999999999743

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=5.6e-06  Score=51.19  Aligned_cols=30  Identities=13%  Similarity=0.384  Sum_probs=23.8

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      |..+.+.+|+.++|.|.. .......+.||+
T Consensus         8 P~~l~~~~G~svtL~C~~-s~~~~~~i~WYr   37 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRA-SENIYSYLAWYQ   37 (109)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEE
T ss_pred             CCEEEECCCCCEEEEEEe-CCCcCcccceee
Confidence            455778899999999998 444456799998

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.20  E-value=2.4e-06  Score=53.62  Aligned_cols=31  Identities=10%  Similarity=0.199  Sum_probs=24.7

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      +..+.+.+|+.++|.|... ......+.|||.
T Consensus         8 ~~~v~v~~G~~vtL~C~~~-~~~~~~i~Wyrq   38 (115)
T d1lp9e1           8 EGLVTLTEGLPVMLNCTYQ-STYSPFLFWYVQ   38 (115)
T ss_dssp             CSEEEEETTSCEEECEEEE-CSSSCCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEEe-CCCcCCeeEEEe
Confidence            4457788999999999984 455678999984

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.19  E-value=4.9e-06  Score=51.77  Aligned_cols=31  Identities=19%  Similarity=0.411  Sum_probs=23.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      +..+.+.+|+.++|.|.. .......+.||+.
T Consensus         6 P~~~~~~~G~~vtl~C~~-~~~~~~~~~WYrq   36 (110)
T d1u3ha1           6 PQSLTVWEGETAILNCSY-ENSAFDYFPWYQQ   36 (110)
T ss_dssp             CSSEEEETTSCEEEEEEE-CCTTEEEEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEe-cCCCCcEEEEEee
Confidence            345678899999999998 4445567999984

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.19  E-value=3e-06  Score=52.29  Aligned_cols=84  Identities=8%  Similarity=0.071  Sum_probs=50.4

Q ss_pred             CCccee-ecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccc--eEEEEEEeecCCCCCeE
Q psy14540          2 HPQLIY-KFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGD--VISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~~-~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~   76 (291)
                      +|.+.+ .|....+..+..++|.|.+.+ .| ...|+|+++|..+.......... ...+.  ..+.|.|....+.  ..
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~-~~~gt~~~~S~L~v~~~~w~--~~   84 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTM-KTNDTYMKFSWLTVPEKSLD--KE   84 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCE-ECSSSEEEEEEEEECTGGGG--SC
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEcccee-cCCCeEEEEEEEEEecccCC--Ce
Confidence            555543 344445677889999999988 44 45699999998776333222211 11111  2345555444332  27


Q ss_pred             EEEEEeCCCCce
Q psy14540         77 YQCTATNRVGSQ   88 (291)
Q Consensus        77 y~C~~~~~~~~~   88 (291)
                      |+|.+.+.....
T Consensus        85 ytC~V~H~s~~~   96 (107)
T d1hxmb2          85 HRCIVRHENNKN   96 (107)
T ss_dssp             EEEEEEETTSGG
T ss_pred             EEEEEEECCCCC
Confidence            999998765543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.19  E-value=2.9e-06  Score=53.22  Aligned_cols=73  Identities=25%  Similarity=0.419  Sum_probs=48.8

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC------------C-----------CeeEeceEEeeccc
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA------------G-----------DRFVMGQYMSLHGD   59 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~------------~-----------~~~~~~~~~~~~~~   59 (291)
                      ++.....+.+|++++|.|.+.+..  ...+.|++  .|+.+.            .           +++.+   ......
T Consensus         5 ~esG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~ti---s~d~s~   81 (127)
T d1i3ua_           5 QESGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAV---SRDNAK   81 (127)
T ss_dssp             EEESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEE---EEEGGG
T ss_pred             EeECCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeE---eccCCc
Confidence            344556789999999999998743  34588997  232211            0           01111   112334


Q ss_pred             eEEEEEEeecCCCCCeEEEEEEe
Q psy14540         60 VISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        60 ~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      ....|+|.+++.+|++.|.|...
T Consensus        82 ~~~~L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          82 NTVNLQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eEEEEeeecccccceeEEEEEEE
Confidence            55779999999999999999754

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.19  E-value=3.9e-06  Score=51.59  Aligned_cols=73  Identities=22%  Similarity=0.375  Sum_probs=49.7

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .++....+++|++++|.|.+.+..  ...+.|++  .|+.++        .          +++.+   ..........|
T Consensus         4 ~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRfti---S~D~s~~t~~L   80 (117)
T d1um5h1           4 QQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATL---TSDKSSNTAYL   80 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEE---EEETTTTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEE---EeccCceeEee
Confidence            455667899999999999998743  44589987  333221        1          11111   11233455679


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      +|.+++.+|++.|.|.-.
T Consensus        81 ~m~sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          81 ELSSLTSEDSAVYYCARS   98 (117)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             cccccCCCcceEEEEeec
Confidence            999999999999999643

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.19  E-value=8.9e-06  Score=49.02  Aligned_cols=34  Identities=26%  Similarity=0.475  Sum_probs=27.1

Q ss_pred             ecCCCceEEEEEeeCCCC-CceeEEeECCEeccCC
Q psy14540        118 VHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSD  151 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  151 (291)
                      ...++.++|.|.+.+.+| ...++|.+||..+...
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~   48 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHS   48 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCC
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCC
Confidence            345678999999976667 6799999999988643

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.19  E-value=7.8e-06  Score=50.86  Aligned_cols=30  Identities=23%  Similarity=0.288  Sum_probs=23.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      +..+.+.+|+.++|.|.. .......+.||+
T Consensus         7 p~s~~~~~G~svtl~C~~-s~~~~~~~~WYr   36 (111)
T d1bd2d1           7 SPSLSVQEGRISILNCDY-TNSMFDYFLWYK   36 (111)
T ss_dssp             CSEEEEETTSCEEEEEEE-CCTTCCEEEEEE
T ss_pred             CCEEEEcCCCCEEEEEEe-CCCCCCeEEEEE
Confidence            345678899999999987 455556789998

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.18  E-value=2.9e-06  Score=52.35  Aligned_cols=31  Identities=23%  Similarity=0.471  Sum_probs=24.2

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|.. .......+.||+.
T Consensus         8 P~s~~~~~G~~vtl~C~~-s~~~~~~~~WYrq   38 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRA-SQDINNFLNWYQQ   38 (107)
T ss_dssp             STTCCBCSSSCCEEEEEE-SSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEc-CCCcCCCeEEEEc
Confidence            345678899999999987 4555667999973

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.18  E-value=1.5e-06  Score=53.54  Aligned_cols=73  Identities=21%  Similarity=0.378  Sum_probs=49.1

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeec------C--C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPL------A--G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~------~--~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .++....+++|++++|.|.+.+..  ...+.|++  .|+.+      .  .          .++.+.   .........|
T Consensus         5 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiS---rD~s~nt~~L   81 (119)
T d1eapb1           5 QESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLT---ADQSSSTAYM   81 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEE---EEGGGTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEE---cccCcceEEe
Confidence            445566789999999999998743  34588987  33322      1  1          111111   1233445679


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      +|.+++.+|++.|.|.-.
T Consensus        82 ~~~sL~~eDTAvYYCAr~   99 (119)
T d1eapb1          82 QLNSLTSEDSAVYFCKRS   99 (119)
T ss_dssp             EECSCCGGGCEEEEEEEC
T ss_pred             eeecccCCcceEEEEEEe
Confidence            999999999999999643

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.18  E-value=5.8e-06  Score=50.97  Aligned_cols=85  Identities=19%  Similarity=0.239  Sum_probs=48.0

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      |..+.+.+|+.++|.|.. .......+.||+....  ....            +.+......            ......
T Consensus         8 P~sl~~~~G~svtL~C~~-s~~~~~~~~WYrq~~g--~~~~------------~l~~~~~~~------------~~~~~~   60 (107)
T d1tjgl1           8 PSSLSASVGDRITITCRA-SQGVTSALAWYRQKPG--SPPQ------------LLIYDASSL------------ESGVPS   60 (107)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTT--SCCE------------EEEETTTEE------------CTTSCT
T ss_pred             CCEEEECCCCCEEEEEEE-CCCCCccEEEEeccCC--ccce------------EEEeecccc------------cCCCCc
Confidence            455778899999999998 4444568999984210  0000            111100000            000111


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      .+..........|.|.++.++|++.|-|.+.+
T Consensus        61 ~~~~~~~~~~~~L~I~~l~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          61 RFSGSGSGTEFTLTISTLRPEDFATYYCQQLH   92 (107)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCSEEEEEECS
T ss_pred             ceEEeccCCEEEEEeccceeCcCceEEEEECc
Confidence            22223334456788888888888888887664

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.18  E-value=1e-05  Score=48.81  Aligned_cols=32  Identities=19%  Similarity=0.348  Sum_probs=22.9

Q ss_pred             CCCceEEEEEeeCCCCC-ceeEEeECCEeccCC
Q psy14540        120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD  151 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~  151 (291)
                      .++..+|.|.+.+.+|. ..++|++||..+...
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~   49 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTG   49 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCC
Confidence            45667899999776775 589999999887543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.18  E-value=3.6e-06  Score=51.58  Aligned_cols=73  Identities=25%  Similarity=0.427  Sum_probs=49.4

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .+.....+++|++++|.|.+.+..  ...+.|++  .|+.++        .          +++.+.   .........|
T Consensus         5 ~esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiS---rD~s~nt~yL   81 (117)
T d1jpth1           5 VESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATIS---ADNSKNTAYL   81 (117)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEE---EEGGGTEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEE---eccccceEEe
Confidence            445567899999999999998743  34588887  333211        1          122221   1233455779


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      ++.+++.+|++.|.|.-.
T Consensus        82 ~m~~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          82 QMNSLRAEDTAVYYCARD   99 (117)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             cccccCCCCceEEEEeec
Confidence            999999999999999643

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.17  E-value=1.9e-06  Score=52.69  Aligned_cols=81  Identities=16%  Similarity=0.260  Sum_probs=44.6

Q ss_pred             CCCcce-eecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCe
Q psy14540          1 SHPQLI-YKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSG   75 (291)
Q Consensus         1 s~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G   75 (291)
                      +||.+. +.|... -..++.++|.|.+.+ .| ...|+|.+++....  . .........+  ...+.|.|....+ +.+
T Consensus         4 s~PsV~~l~p~~~-~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~--~-~~~~~~~~~g~ys~~S~L~v~~~~w-~~~   78 (102)
T d1mjuh2           4 TAPSVYPLAPVCG-DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG--V-HTFPAVLQSDLYTLSSSVTVTSSTW-PSQ   78 (102)
T ss_dssp             BCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTBCTT--E-EECCCEEETTEEEEEEEEEECTTTT-TTS
T ss_pred             cCCEEEEECCCcc-ccCCCcEEEEEEEeeeeCCCeEEEECcCCccCC--e-EecccccCCCCEEEEEEEEEehhHc-CCc
Confidence            467664 444333 346789999999998 33 56799977764322  1 1111111111  2336677766665 357


Q ss_pred             EEEEEEeCCCC
Q psy14540         76 IYQCTATNRVG   86 (291)
Q Consensus        76 ~y~C~~~~~~~   86 (291)
                      .|+|.+.+...
T Consensus        79 ~ytC~V~H~~~   89 (102)
T d1mjuh2          79 SITCNVAHPAS   89 (102)
T ss_dssp             CCEEEEEEGGG
T ss_pred             eEEEEEEECCC
Confidence            89999987544

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.17  E-value=4.4e-06  Score=51.56  Aligned_cols=72  Identities=24%  Similarity=0.451  Sum_probs=48.4

Q ss_pred             ecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------C----------CeeEeceEEeeccceEEEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------G----------DRFVMGQYMSLHGDVISHVNI   66 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~----------~~~~~~~~~~~~~~~~~~l~i   66 (291)
                      +.....+.+|++++|.|.+.+..  ...+.|++  .|+.++       .          +++.+.   .........|+|
T Consensus         5 esg~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS---~D~s~~~~~L~i   81 (119)
T d1kxvc_           5 ESGGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTIS---QGNAKNTAYLQM   81 (119)
T ss_dssp             EECCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEE---ECSSTTEEEEEE
T ss_pred             eECCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEe---cccCCcceeccc
Confidence            34456789999999999998743  34588988  332221       0          112211   123345578999


Q ss_pred             eecCCCCCeEEEEEEe
Q psy14540         67 SSVRVEDSGIYQCTAT   82 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~~   82 (291)
                      .+++.+|++.|.|...
T Consensus        82 ~~L~~eDtA~YYCAr~   97 (119)
T d1kxvc_          82 DSLKPDDTAMYYCKPS   97 (119)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             ccCCcCCcceEeeeec
Confidence            9999999999999754

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.16  E-value=4.2e-06  Score=51.45  Aligned_cols=76  Identities=24%  Similarity=0.375  Sum_probs=49.3

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------C-CeeE-----eceE--EeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------G-DRFV-----MGQY--MSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~-~~~~-----~~~~--~~~~~~~~~~l~i~   67 (291)
                      ++.....+++|++++|.|.+.+..  ...+.|++  .|+.++       . ....     ..+.  ..........|+|.
T Consensus         5 ~eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~   84 (118)
T d2fbjh1           5 LESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMS   84 (118)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeecccc
Confidence            344556799999999999998743  33588987  333221       1 1100     0111  11234455779999


Q ss_pred             ecCCCCCeEEEEEEe
Q psy14540         68 SVRVEDSGIYQCTAT   82 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~   82 (291)
                      +++.+|++.|.|.-.
T Consensus        85 sL~~eDtAvYYCAr~   99 (118)
T d2fbjh1          85 KVRSEDTALYYCARL   99 (118)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEeeEe
Confidence            999999999999754

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.16  E-value=9.1e-06  Score=50.55  Aligned_cols=76  Identities=24%  Similarity=0.419  Sum_probs=49.5

Q ss_pred             eecceeeeecCCcEEEEEEecCC--CCCeeEEEE--CCeecC--------CCeeE-----eceE--EeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKL--DGYPLA--------GDRFV-----MGQY--MSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~~--------~~~~~-----~~~~--~~~~~~~~~~l~i~   67 (291)
                      ++.....+++|++++|.|.+.+.  ....+.|++  .|+.++        .....     ..+.  ..........|++.
T Consensus         4 ~esG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~   83 (124)
T d1zvya1           4 VESGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMD   83 (124)
T ss_dssp             EEECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceec
Confidence            34455678999999999999873  344689988  333221        11111     0111  12233455779999


Q ss_pred             ecCCCCCeEEEEEEe
Q psy14540         68 SVRVEDSGIYQCTAT   82 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~   82 (291)
                      +++.+|++.|.|...
T Consensus        84 sL~~eDtAvYYCAr~   98 (124)
T d1zvya1          84 SVKSEDTAIYTCGAT   98 (124)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             cccCCcceEEEEeec
Confidence            999999999999764

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.16  E-value=5.6e-06  Score=51.05  Aligned_cols=73  Identities=25%  Similarity=0.423  Sum_probs=49.2

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------CC----------eeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------GD----------RFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~~----------~~~~~~~~~~~~~~~~~l   64 (291)
                      .+.....+++|+++.|.|.+.+..  ...+.|++  .|+.+.        ..          ++.+   ..........|
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRfti---SrD~s~nt~yL   81 (119)
T d1rz7h1           5 VQSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTI---TADTSTDTGYL   81 (119)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEE---EEETTTTEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEE---ecccCceEEEe
Confidence            345566789999999999998743  34588987  332221        11          1111   11234455679


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      +|.+++.+|++.|.|...
T Consensus        82 qm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          82 ELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             EECSCCGGGCEEEEEEEC
T ss_pred             eeeccCcccceEEEEeec
Confidence            999999999999999754

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.16  E-value=6.8e-06  Score=51.20  Aligned_cols=31  Identities=13%  Similarity=0.281  Sum_probs=23.1

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      ..+.+.+|++++|.|..........+.||+.
T Consensus         6 ~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ   36 (112)
T d1kgcd1           6 NSMESNEEEPVHLPCNHSTISGTDYIHWYRQ   36 (112)
T ss_dssp             SEEEEETTSCEEEEEEESCCCTTCCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEEeCCCccccEEEEEE
Confidence            4477889999999998733333456999984

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=2.1e-06  Score=52.37  Aligned_cols=81  Identities=15%  Similarity=0.225  Sum_probs=47.7

Q ss_pred             CCcce-eecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEE-eeccceEEEEEEeecCCCCCeEE
Q psy14540          2 HPQLI-YKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYM-SLHGDVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         2 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~y   77 (291)
                      +|.+. +.|... ...++.++|.|.+.+ .| ...|.|.+++.....  ....... .......+.|.|..-.+ +.|.|
T Consensus         5 aP~V~~l~p~~~-~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~--~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~y   80 (101)
T d1kcvh2           5 APSVFPLVPGSA-TAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGV--LTVSAVLQSGLYTLSSNTTVASGTW-PSASV   80 (101)
T ss_dssp             CCEEEEECCCSC-CTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTE--EECCCEEETTEEEEEEEEEEETTTT-TTSCC
T ss_pred             CCEEEeECCCcc-ccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccc--eeeeeecCCCCEEEEEEEEEchhhc-CCCeE
Confidence            45443 444432 346789999999998 43 567999888754331  1111111 11112346677766555 46789


Q ss_pred             EEEEeCCCC
Q psy14540         78 QCTATNRVG   86 (291)
Q Consensus        78 ~C~~~~~~~   86 (291)
                      +|.+.+...
T Consensus        81 tC~V~H~~~   89 (101)
T d1kcvh2          81 TCLVAHPKS   89 (101)
T ss_dssp             EEEEEEGGG
T ss_pred             EEEEEeCCC
Confidence            999987543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.16  E-value=4.3e-06  Score=52.44  Aligned_cols=30  Identities=13%  Similarity=0.318  Sum_probs=23.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      +..+.+.+|++++|.|... ......+.||+
T Consensus         7 ~~~v~v~~G~svtl~C~~~-~~~~~~~~Wyr   36 (115)
T d1i9ea_           7 DARVTVSEGASLQLRCKYS-YSATPYLFWYV   36 (115)
T ss_dssp             CSEEEEETTSCEEECCEEE-CSSCCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEEc-CCCCCCEEEEE
Confidence            3457889999999999984 44556789997

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=8.3e-06  Score=50.28  Aligned_cols=76  Identities=18%  Similarity=0.354  Sum_probs=48.0

Q ss_pred             CCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540        120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  198 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~  198 (291)
                      .+..++|.|.+.+.+|. ..|.|.+||..+.....             .......+..|.|.-                 
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~-------------~~~~~~~~~dgtys~-----------------   68 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL-------------NSWTDQDSKDSTYSM-----------------   68 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE-------------EEECCCCTTTCCEEE-----------------
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeE-------------eccccEecCCCCEEE-----------------
Confidence            35678999999776775 58999999988754311             111222333455543                 


Q ss_pred             eccceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540        199 NEYTSSLSIATLSTGHSGNYTCVASNTVAS  228 (291)
Q Consensus       199 ~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  228 (291)
                         .+.|.|..-....+..|+|.+.+....
T Consensus        69 ---~S~L~v~~~~W~~g~~ytC~V~H~~~~   95 (107)
T d1mjul2          69 ---SSTLTLTKDEYERHNSYTCEATHKTST   95 (107)
T ss_dssp             ---EEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             ---EEEEEECHHHhCCCCEEEEEEEECCCC
Confidence               245666655555567788888876533

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.15  E-value=3e-06  Score=52.62  Aligned_cols=72  Identities=19%  Similarity=0.374  Sum_probs=48.8

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .++....+++|+++.|.|.+.+..  ...+.|++  .|+.+.        .          +++.+   ..........|
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~ti---SrD~s~~t~yL   81 (124)
T d2b1hh1           5 EQSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTM---SADRSTNTAHL   81 (124)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEE---EEETTTTEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEE---eecCCCcEEEE
Confidence            455667889999999999998743  23478887  333221        1          12211   12234455779


Q ss_pred             EEeecCCCCCeEEEEEE
Q psy14540         65 NISSVRVEDSGIYQCTA   81 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~   81 (291)
                      ++.+++.+|++.|.|.-
T Consensus        82 ~~~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          82 QWSSLKPSDTALYYCAR   98 (124)
T ss_dssp             EESSCCGGGCEEEEEEE
T ss_pred             eeeccccccceEEEEee
Confidence            99999999999999963

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.15  E-value=1.2e-05  Score=48.31  Aligned_cols=22  Identities=18%  Similarity=0.486  Sum_probs=18.4

Q ss_pred             CCceEEEEEeeCCCCCceeEEeE
Q psy14540        121 GDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      |+.++|.|.. .......+.||+
T Consensus         1 G~~vtl~C~~-~~~~~~~~~Wyr   22 (94)
T d2gj6d1           1 GAIASLNCTY-SDRGSQSFFWYR   22 (94)
T ss_dssp             TSCEEEEEEE-CCTTCCEEEEEE
T ss_pred             CccEEEEEEE-ccccCCcEEEEE
Confidence            7899999997 456667899998

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.15  E-value=8.5e-06  Score=50.20  Aligned_cols=86  Identities=17%  Similarity=0.217  Sum_probs=48.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      +..+.+.+|++++|.|.. .......+.||+....  ....            +.+........           + ...
T Consensus         8 P~sl~~~~G~svtl~C~~-s~~~~~~~~WYrq~pg--~~~~------------~l~~~~~~~~~-----------~-~~~   60 (107)
T d1d5il1           8 PSSMYASLGERVTITCKA-SQDINSYLSWFQQKPG--KSPK------------TLIYRANRLVD-----------G-VPS   60 (107)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTT--SCCE------------EEEETTTEECT-----------T-SCT
T ss_pred             CCEEEECCCCCEEEEEEc-CCCCCCccceeEeccc--cCeE------------EEEEecccccc-----------C-cCC
Confidence            445778899999999987 4445567899984210  0000            11110000000           0 111


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT  225 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  225 (291)
                      .+..........|.|.++..+|+|.|-|.....
T Consensus        61 rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1d5il1          61 RFSGSGSGQDYSLTISSLEYEDMGIYYCLQYDE   93 (107)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             ceeecccCCEEEccccccCCcCCEEEEeeeccC
Confidence            222333344567888888888888888877653

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.15  E-value=7.9e-06  Score=50.33  Aligned_cols=73  Identities=25%  Similarity=0.443  Sum_probs=49.4

Q ss_pred             eecceeeeecCCcEEEEEEecCC--CCCeeEEEE--CCeecC---------C-----------CeeEeceEEeeccceEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKL--DGYPLA---------G-----------DRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~~---------~-----------~~~~~~~~~~~~~~~~~   62 (291)
                      .++....+.+|++++|.|.+.+.  ....+.|++  .|+.+.         +           +++.+   .........
T Consensus         5 ~esG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRfti---S~D~s~n~~   81 (120)
T d1dlfh_           5 EESGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTI---SRDDSKRRV   81 (120)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEE---EEETTTTEE
T ss_pred             eeECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceeccee---eccccccee
Confidence            34555678999999999999873  345588987  343221         0           11111   122344557


Q ss_pred             EEEEeecCCCCCeEEEEEEe
Q psy14540         63 HVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~   82 (291)
                      .|+|.+++.+|++.|.|...
T Consensus        82 ~L~~~~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          82 YLQMNTLRAEDTGIYYCTGI  101 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             ccceeeccCCCceEEEeeEe
Confidence            79999999999999999754

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.14  E-value=1.2e-05  Score=48.85  Aligned_cols=33  Identities=24%  Similarity=0.493  Sum_probs=26.4

Q ss_pred             cCCCceEEEEEeeCCCC-CceeEEeECCEeccCC
Q psy14540        119 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSD  151 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  151 (291)
                      ..|+..+|.|.+.+.+| ...+.|.+||..+...
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~   49 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGF   49 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSC
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCc
Confidence            45778899999977777 4689999999876543

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.13  E-value=4.7e-06  Score=52.04  Aligned_cols=73  Identities=21%  Similarity=0.403  Sum_probs=49.6

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .++....+++|++++|.|.+.+..  ...+.|++  .|+.++        .          +++.+   ..........|
T Consensus         5 ~esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~ti---s~D~s~n~vyL   81 (125)
T d1rihh1           5 QQSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAIL---TADRSSNTAFM   81 (125)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEE---EEETTTTEEEE
T ss_pred             EeECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEE---ecccCcceEee
Confidence            456667899999999999998743  34588887  333221        1          11111   12233455779


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      +|.+++.+|++.|.|.-.
T Consensus        82 ~l~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          82 YLNSLTSEDSAVYYCARE   99 (125)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eeeccCcccceEEEEeee
Confidence            999999999999999754

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.13  E-value=1.1e-05  Score=48.78  Aligned_cols=33  Identities=33%  Similarity=0.606  Sum_probs=26.5

Q ss_pred             ecCCCceEEEEEeeCCCC-CceeEEeECCEeccC
Q psy14540        118 VHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS  150 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~  150 (291)
                      ...|+..+|.|.+.+.+| ...++|.+||..+..
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~   49 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTE   49 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccC
Confidence            345778899999977777 468999999998864

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.5e-06  Score=52.56  Aligned_cols=25  Identities=20%  Similarity=0.246  Sum_probs=21.0

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                      ..+|.|.++..+|+|.|.|.+....
T Consensus        82 ~~sL~I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          82 NCTLSIRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEECCCChHHCEEEEEEEEeCC
Confidence            5679999999999999999987654

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.12  E-value=7.7e-06  Score=50.46  Aligned_cols=76  Identities=22%  Similarity=0.378  Sum_probs=48.8

Q ss_pred             eecceeeeecCCcEEEEEEecCC--CCCeeEEEE--CCeecC-------C---CeeEe---ceEEe--eccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKL--DGYPLA-------G---DRFVM---GQYMS--LHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~~-------~---~~~~~---~~~~~--~~~~~~~~l~i~   67 (291)
                      .+.....+.+|++++|.|.+.+.  ....+.|++  .|+.+.       .   ..+..   .+...  ........|+|.
T Consensus         5 ~eSG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~   84 (121)
T d2p49b1           5 VESGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMD   84 (121)
T ss_dssp             EEEECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEee
Confidence            34455678999999999999873  345588987  333221       0   01000   01111  223455679999


Q ss_pred             ecCCCCCeEEEEEEe
Q psy14540         68 SVRVEDSGIYQCTAT   82 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~   82 (291)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          85 SLKPEDTATYYCAAG   99 (121)
T ss_dssp             SCCGGGCEEEEEEES
T ss_pred             eccccceeEEeeecc
Confidence            999999999999754

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.12  E-value=4.9e-06  Score=50.77  Aligned_cols=72  Identities=25%  Similarity=0.464  Sum_probs=48.6

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeec------C-C-----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPL------A-G-----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~------~-~-----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      ++.....+.+|++++|.|.+.+..  ...+.|++  .|+.+      . .           +++.+   ..........|
T Consensus         5 ~eSG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRfti---SrD~s~nt~~L   81 (114)
T d1indh1           5 VESGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTI---SRDNAQNNLYL   81 (114)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEE---EEETTTTEEEE
T ss_pred             eeECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEE---eccCccceeee
Confidence            345556799999999999998743  34588987  33222      1 1           11111   11234455779


Q ss_pred             EEeecCCCCCeEEEEEE
Q psy14540         65 NISSVRVEDSGIYQCTA   81 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+++.+|++.|.|..
T Consensus        82 ~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          82 QLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             EECSCCGGGCEEEEEEC
T ss_pred             eeeeeccCcccEEEECC
Confidence            99999999999999974

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.11  E-value=2.2e-06  Score=51.78  Aligned_cols=67  Identities=24%  Similarity=0.475  Sum_probs=44.3

Q ss_pred             eeecCCcEEEEEEecCC--CCCeeEEEE--CCeecC-------C----------CeeEeceEEeeccceEEEEEEeecCC
Q psy14540         13 TLQPGPPVSLKCIATGN--PTPHISWKL--DGYPLA-------G----------DRFVMGQYMSLHGDVISHVNISSVRV   71 (291)
Q Consensus        13 ~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~~-------~----------~~~~~~~~~~~~~~~~~~l~i~~~~~   71 (291)
                      .|++|++++|.|.+.+.  ....+.|++  .|+.++       .          .++.+   ..........|+|.+++.
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~ti---Srd~s~n~~~L~i~~l~~   80 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTI---SRDNAKKTVYLEMNSLEP   80 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEE---EECTTTCCEEEEECSCCG
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEE---ecCCceeEEEEeecCCCc
Confidence            57899999999998863  344588987  333221       1          11111   112344557799999999


Q ss_pred             CCCeEEEEEEe
Q psy14540         72 EDSGIYQCTAT   82 (291)
Q Consensus        72 ~d~G~y~C~~~   82 (291)
                      +|++.|.|...
T Consensus        81 eDtAvYyCA~~   91 (107)
T d1sjva_          81 EDTAVYYCYTH   91 (107)
T ss_dssp             GGCSEEEEEEC
T ss_pred             ccceeeeEecc
Confidence            99999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.11  E-value=8e-06  Score=50.78  Aligned_cols=75  Identities=25%  Similarity=0.458  Sum_probs=49.5

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------C-CeeE-----ece--EEeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------G-DRFV-----MGQ--YMSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~-~~~~-----~~~--~~~~~~~~~~~l~i~   67 (291)
                      .++....+++|+++.|.|.+.+..  ...+.|++  .|+.++       . ....     ..+  ...........|.+.
T Consensus         4 ~esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~   83 (126)
T d1lmka1           4 QQSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLS   83 (126)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeec
Confidence            456667899999999999998743  34588887  333221       1 1110     011  112234556789999


Q ss_pred             ecCCCCCeEEEEEE
Q psy14540         68 SVRVEDSGIYQCTA   81 (291)
Q Consensus        68 ~~~~~d~G~y~C~~   81 (291)
                      +++.+|++.|.|.-
T Consensus        84 ~L~~eDTAvYYCAr   97 (126)
T d1lmka1          84 SLTSEDSAVYYCAR   97 (126)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999964

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.10  E-value=1.5e-05  Score=48.37  Aligned_cols=33  Identities=27%  Similarity=0.699  Sum_probs=26.4

Q ss_pred             cCCCceEEEEEeeCCCC-CceeEEeECCEeccCC
Q psy14540        119 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSD  151 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  151 (291)
                      ..|+..+|.|.+.+.+| ...++|++||..+..+
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~   50 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEG   50 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCC
Confidence            35677899999977777 4599999999987643

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.10  E-value=8.8e-06  Score=50.38  Aligned_cols=73  Identities=25%  Similarity=0.424  Sum_probs=48.8

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------C-----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------G-----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~-----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      ++.....+.+|++++|.|.+.+..  ...+.|++  .|+.++       .           +++.+   ..........|
T Consensus         5 ~esg~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~ti---s~D~s~~~~~L   81 (121)
T d1ol0a_           5 VESGGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTI---SRDNSKNTLYL   81 (121)
T ss_dssp             EEEECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEE---EEETTTTEEEE
T ss_pred             EeECCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEE---eccccceeEEe
Confidence            344556789999999999998743  33588987  333221       1           11111   11233455779


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      +|.+++.+|++.|.|...
T Consensus        82 ~i~sL~~eDtAvYYCAr~   99 (121)
T d1ol0a_          82 QMNSLRAEDTAVYYCARE   99 (121)
T ss_dssp             EECSCCGGGCEEEEEEEC
T ss_pred             eeeecccccceEEEEEEe
Confidence            999999999999999754

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.09  E-value=9.1e-06  Score=50.89  Aligned_cols=30  Identities=17%  Similarity=0.375  Sum_probs=24.1

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      +..+.+.+|+.++|.|... ......+.||+
T Consensus         7 p~~v~~~~G~~vtl~C~~s-~~~~~~i~WYr   36 (115)
T d1j8hd1           7 GSHVSVSEGALVLLRCNYS-SSVPPYLFWYV   36 (115)
T ss_dssp             CSEEEEETTSCEEECCEEE-CSSCCEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEeC-CCCceeEEEEE
Confidence            4457889999999999984 44556799998

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.09  E-value=2.3e-05  Score=48.80  Aligned_cols=28  Identities=21%  Similarity=0.527  Sum_probs=22.0

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      ....+.+|+.++|.|....+  ...+.||+
T Consensus         7 ~~~~~~~G~svtl~C~~~~~--~~~~~WYr   34 (113)
T d2ntsp1           7 RYLIKTRGQQVTLSCSPISG--HRSVSWYQ   34 (113)
T ss_dssp             SEEEEETTCCEEEEEECSTT--CCEEEEEE
T ss_pred             CeEEECCCCCEEEEEEECCC--CCEEEEEE
Confidence            44678899999999997433  35799998

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.09  E-value=5.9e-06  Score=51.10  Aligned_cols=73  Identities=25%  Similarity=0.418  Sum_probs=49.4

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .++....+++|+++.|.|.+.+..  ...+.|++  .|+.++        .          +++.+   ..........|
T Consensus         5 ~esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~ti---S~D~s~~t~~L   81 (124)
T d1yedb1           5 QQSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATL---TADKSSSTAYM   81 (124)
T ss_dssp             EECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEE---EEETTTTEEEE
T ss_pred             EeeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEE---EccCCcceEEe
Confidence            345566789999999999998743  34588987  333221        1          11111   12234455779


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      .+.+++.+|++.|.|.-.
T Consensus        82 ~~~sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          82 QLSSLKSEDSAVYFCTRW   99 (124)
T ss_dssp             EEESCCGGGCEEEEEEEC
T ss_pred             cccccCCCcceEEEeccc
Confidence            999999999999999743

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.09  E-value=1.9e-05  Score=48.94  Aligned_cols=31  Identities=16%  Similarity=0.466  Sum_probs=23.0

Q ss_pred             cceeecCCCceEEEEEeeCCC-CCceeEEeEC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGD-PPLTISWLKN  144 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~  144 (291)
                      ..+.+.+|+.++|.|...... ....+.||+.
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq   39 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQ   39 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEE
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceee
Confidence            357889999999999874322 2456999973

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.09  E-value=8.5e-06  Score=50.82  Aligned_cols=72  Identities=21%  Similarity=0.418  Sum_probs=46.8

Q ss_pred             ecceeeeecCCcEEEEEEecCC--CCCeeEEEE--CCeecC-------C-----------CeeEeceEEeeccceEEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGN--PTPHISWKL--DGYPLA-------G-----------DRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~~-------~-----------~~~~~~~~~~~~~~~~~~l~   65 (291)
                      +.....+++|+++.|.|.+.+.  ....+.|++  .|+.++       .           +++.+.   .........|+
T Consensus         5 esG~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis---~D~s~~~~~L~   81 (126)
T d1rjca1           5 ASGGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTIS---LDNAKNTLYLQ   81 (126)
T ss_dssp             CBCCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEE---EEC--CEEEEE
T ss_pred             eECCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEE---ecCCceEEEEE
Confidence            3445678999999999999873  344588987  333221       1           112221   12234556799


Q ss_pred             EeecCCCCCeEEEEEEe
Q psy14540         66 ISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~   82 (291)
                      |.+++.+|++.|.|...
T Consensus        82 i~~l~~eDTAvYYCAr~   98 (126)
T d1rjca1          82 MNSLKPEDTAMYYCAAD   98 (126)
T ss_dssp             ECSCCGGGCEEEEEEEC
T ss_pred             EeccCcccCceeEEEee
Confidence            99999999999999754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.09  E-value=1.2e-05  Score=49.66  Aligned_cols=85  Identities=16%  Similarity=0.210  Sum_probs=48.4

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH  192 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  192 (291)
                      |..+.+.+|+.++|.|.. .+.....+.||+...  .....            +.+......           .. ....
T Consensus        10 P~~l~~~~G~svtL~C~~-s~~~~~~~~WYrq~~--g~~p~------------~l~~~~~~~-----------~~-~~~~   62 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQA-SQDIIKYLNWYQQKP--GKAPK------------LLIYEASNL-----------QA-GVPS   62 (109)
T ss_dssp             CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECT--TSCCE------------EEEETTTEE-----------CT-TCCT
T ss_pred             CCEEEECCCCCEEEEEEe-cCCCCCcceEeeecc--CCCCE------------EEEEecccC-----------CC-CCCC
Confidence            445778899999999998 454456789998321  11111            111100000           00 1112


Q ss_pred             ceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      .+..........|.|.++..+|+|.|-|.+..
T Consensus        63 ~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          63 RFSGSGSGTDYTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             TEEEEEETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             CEEeeCCCCEeEEEEeeceeCcCceEEEeecC
Confidence            22233344456788888888888888887764

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.09  E-value=1.1e-05  Score=50.55  Aligned_cols=90  Identities=21%  Similarity=0.383  Sum_probs=55.7

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------C-----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------G-----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~-----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .+.....+++|++++|.|.+.+..  ...+.|++  .|+.++       .           +++.+   ..........|
T Consensus         5 ~eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTi---SrD~s~~t~yL   81 (135)
T d1ieha_           5 QASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTI---SRDNAKNTLYL   81 (135)
T ss_dssp             EEECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEE---EECTTTCCEEE
T ss_pred             eeECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEE---eccCCCceeEe
Confidence            345566789999999999998733  44588987  333221       1           11111   11223445679


Q ss_pred             EEeecCCCCCeEEEEEEeCCCC--ceeeeeeEEEEcC
Q psy14540         65 NISSVRVEDSGIYQCTATNRVG--SQTHSADMRVYDA   99 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~~~~~--~~~~~~~l~v~~~   99 (291)
                      .|.+++.+|++.|.|.-....+  ..-.-+.++|...
T Consensus        82 ~i~~L~~eDTAvYYCAr~~~~~~d~WGqGT~VTVsSa  118 (135)
T d1ieha_          82 QMNSLKSEDTAVYYCAKYSGGALDAWGQGTQVTVSSQ  118 (135)
T ss_dssp             EEESCCSSSCEEEEEEEBSSSSBCCCSCCEEEEECSS
T ss_pred             cEeeeCcccceeeEEEEecCCccceeCCCEEEEEECC
Confidence            9999999999999997553221  1234445555543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.08  E-value=7.8e-06  Score=50.82  Aligned_cols=75  Identities=23%  Similarity=0.406  Sum_probs=47.1

Q ss_pred             eecceeeeecCCcEEEEEEecCCC----CCeeEEEE--CCeecC-------CC--eeEe---ceE--EeeccceEEEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP----TPHISWKL--DGYPLA-------GD--RFVM---GQY--MSLHGDVISHVNI   66 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~--~~~~~~-------~~--~~~~---~~~--~~~~~~~~~~l~i   66 (291)
                      .+.....+++|++++|.|.+.+..    ...+.|++  .|+.+.       ..  .+..   .+.  ..........|+|
T Consensus         5 ~esg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i   84 (123)
T d1r0ah1           5 KESGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNM   84 (123)
T ss_dssp             EEECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEE
T ss_pred             EeECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcce
Confidence            344556789999999999987632    22478987  333221       11  1000   111  1122344577999


Q ss_pred             eecCCCCCeEEEEEE
Q psy14540         67 SSVRVEDSGIYQCTA   81 (291)
Q Consensus        67 ~~~~~~d~G~y~C~~   81 (291)
                      .+++.+|++.|.|.-
T Consensus        85 ~sl~~eDsAvYyCAr   99 (123)
T d1r0ah1          85 MTVETADTAIYYCAQ   99 (123)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             eecccccceEEeecc
Confidence            999999999999974

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.08  E-value=9.4e-06  Score=50.61  Aligned_cols=73  Identities=19%  Similarity=0.416  Sum_probs=48.9

Q ss_pred             eecceeeeecCCcEEEEEEecCCCC--CeeEEEE--CCeecC------------------CCeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNPT--PHISWKL--DGYPLA------------------GDRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~~--~~v~W~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~l   64 (291)
                      .+.....+++|+++.|.|.+.+...  ..+.|++  .|+.++                  .+++.+.   .........|
T Consensus         5 ~esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS---~D~s~~t~yL   81 (128)
T d2nxyd1           5 VESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTIT---ADKSTSTVYL   81 (128)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEE---EETTTTEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEe---ecCCCceEEe
Confidence            4455667999999999999987443  3478876  332221                  1122221   1233455679


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      ++.+++.+|++.|.|.-.
T Consensus        82 ~~~sL~~eDTA~YYCAr~   99 (128)
T d2nxyd1          82 ELRNLRSDDTAVYFCAGV   99 (128)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eeeeccccCceEEEEeEE
Confidence            999999999999999854

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.08  E-value=4.7e-06  Score=50.08  Aligned_cols=30  Identities=17%  Similarity=0.075  Sum_probs=23.5

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      ..+..|++|+|.|..  ......+.++|+|..
T Consensus        11 ~~V~~G~~VTl~C~~--~~~~~~f~L~keg~~   40 (96)
T d1nkra1          11 PLVKSEETVILQCWS--DVMFEHFLLHREGMF   40 (96)
T ss_dssp             SEEETTCCEEEEEEE--SSCCSEEEEEEESSS
T ss_pred             CccCCCCcEEEEECC--CCCCCEEEEEECCCc
Confidence            457789999999997  345668899997753

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=6e-06  Score=50.63  Aligned_cols=32  Identities=28%  Similarity=0.476  Sum_probs=25.3

Q ss_pred             CCCceEEEEEeeCCCCCc-eeEEeECCEeccCC
Q psy14540        120 SGDRAGVQCLVTKGDPPL-TISWLKNGLPILSD  151 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~  151 (291)
                      .+..++|.|.+.+.+|.. .|.|+++|..+...
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~   52 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVD   52 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCC
Confidence            456789999997667754 89999999987643

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.1e-05  Score=48.13  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=23.6

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      ..+..|++|+|.|..  ......+.|+|+|..
T Consensus        13 ~~V~~G~~VTL~C~~--~~~~~~f~L~Keg~~   42 (93)
T d1olla2          13 PEVISGEKVTFYCRL--DTATSMFLLLKEGRS   42 (93)
T ss_dssp             SEEETTCEEEEEEEC--SSSCSEEEEEEESSS
T ss_pred             CcccCCCcEEEEECC--CCCCCEEEEEECCCc
Confidence            457789999999996  445678999997753

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.07  E-value=8e-06  Score=50.23  Aligned_cols=76  Identities=24%  Similarity=0.388  Sum_probs=49.4

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------CCeeEe-----ce--EEeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------GDRFVM-----GQ--YMSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~~~~~~-----~~--~~~~~~~~~~~l~i~   67 (291)
                      ++.....+++|++++|.|.+.+..  ...+.|++  .|+.++        ......     .+  ...........|++.
T Consensus         5 ~esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~   84 (120)
T d1ad9b1           5 VQSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELS   84 (120)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEecccc
Confidence            455567799999999999998743  33588887  333221        111000     11  111234456779999


Q ss_pred             ecCCCCCeEEEEEEe
Q psy14540         68 SVRVEDSGIYQCTAT   82 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~   82 (291)
                      +++.+|++.|.|.-.
T Consensus        85 ~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          85 SLRSEDTAFYFCARE   99 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEEEc
Confidence            999999999999753

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=5.9e-06  Score=50.75  Aligned_cols=75  Identities=19%  Similarity=0.325  Sum_probs=48.5

Q ss_pred             ecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------CCeeEe-----c--eEEeeccceEEEEEEeec
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------GDRFVM-----G--QYMSLHGDVISHVNISSV   69 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~~~~~~-----~--~~~~~~~~~~~~l~i~~~   69 (291)
                      +.....+++|++++|.|.+.+..  ...+.|++  .|+.++       ......     .  ............|++.++
T Consensus         6 eSg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L   85 (116)
T d1fn4b1           6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL   85 (116)
T ss_dssp             EECCSBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESC
T ss_pred             eECCceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceecc
Confidence            34456789999999999998733  44588987  444322       111100     0  111123344567999999


Q ss_pred             CCCCCeEEEEEEe
Q psy14540         70 RVEDSGIYQCTAT   82 (291)
Q Consensus        70 ~~~d~G~y~C~~~   82 (291)
                      +.+|++.|.|...
T Consensus        86 ~~eDTAvYyCAr~   98 (116)
T d1fn4b1          86 QTDDTGTYYCTRD   98 (116)
T ss_dssp             CCCCCEEEEEEEE
T ss_pred             CCCCCEEEEEEee
Confidence            9999999999754

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=98.07  E-value=1.4e-05  Score=49.04  Aligned_cols=73  Identities=29%  Similarity=0.446  Sum_probs=49.2

Q ss_pred             eecceeeeecCCcEEEEEEecCC--CCCeeEEEE--CCeecC-------C----------CeeEeceEEeeccceEEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKL--DGYPLA-------G----------DRFVMGQYMSLHGDVISHVN   65 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~--~~~~~~-------~----------~~~~~~~~~~~~~~~~~~l~   65 (291)
                      ++.....+.+|++++|.|.+.+.  ....+.|++  .|+.++       .          +++.+   ..........|.
T Consensus         5 ~eSg~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~ti---SrD~s~nt~~L~   81 (118)
T d1lo4h1           5 VETGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTI---SRDIVRNILTLQ   81 (118)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEE---EEETTTTEEEEE
T ss_pred             eeECCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEE---eccccceeeeec
Confidence            34455678999999999999874  344588987  333221       1          11111   112344557799


Q ss_pred             EeecCCCCCeEEEEEEe
Q psy14540         66 ISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        66 i~~~~~~d~G~y~C~~~   82 (291)
                      |.+++.+|++.|.|.-.
T Consensus        82 i~~l~~eDtA~YyCAr~   98 (118)
T d1lo4h1          82 MSRLRSEDTAIYYCARG   98 (118)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             cccccCCcceEEEeccc
Confidence            99999999999999754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.5e-06  Score=53.66  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=21.7

Q ss_pred             eeecCCCceEEEEEeeCCCCC---ceeEEeECCEec
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPP---LTISWLKNGLPI  148 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~  148 (291)
                      +....|+.++|.|........   ..+.|.+++..+
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v   39 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMV   39 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEE
Confidence            567789999999987322221   356777766543

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.07  E-value=8e-06  Score=51.23  Aligned_cols=71  Identities=25%  Similarity=0.408  Sum_probs=46.4

Q ss_pred             ecceeeeecCCcEEEEEEecCCC----CCeeEEEE--CCeecC-------CC----------eeEeceEEeeccceEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNP----TPHISWKL--DGYPLA-------GD----------RFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~--~~~~~~-------~~----------~~~~~~~~~~~~~~~~~l   64 (291)
                      ++....+++|++++|.|.+.+..    ...+.|++  .|+.+.       ..          ++.+   ..........|
T Consensus         6 esG~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rfti---s~d~s~~t~~L   82 (126)
T d1etzb1           6 ESGPGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTV---SKDTSSNQVFL   82 (126)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEE---EEETTTTEEEE
T ss_pred             eECCceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEE---ecccCCcEEEc
Confidence            34456789999999999987632    23467986  333221       11          1111   11223445789


Q ss_pred             EEeecCCCCCeEEEEEE
Q psy14540         65 NISSVRVEDSGIYQCTA   81 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~   81 (291)
                      +|.+++.+|++.|.|..
T Consensus        83 ~i~~l~~eDtAvYyCAr   99 (126)
T d1etzb1          83 KITSVDTSDTATYHCAR   99 (126)
T ss_dssp             EECSCCGGGCEEEEEEE
T ss_pred             ceecccccccceEEEEE
Confidence            99999999999999974

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.5e-05  Score=48.09  Aligned_cols=74  Identities=16%  Similarity=0.313  Sum_probs=47.3

Q ss_pred             CCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540        121 GDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN  199 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~  199 (291)
                      ++.++|.|.+.+.+|. ..|+|.+||..+.......             ........|.|.-                  
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~-------------~~~~~~~dgtys~------------------   68 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQES-------------VTEQDSKDSTYSL------------------   68 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEE-------------ECCCCTTTCCEEE------------------
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEe-------------cccccCCCCcEEE------------------
Confidence            5679999999766774 5899999998775432111             1112233455543                  


Q ss_pred             ccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540        200 EYTSSLSIATLSTGHSGNYTCVASNTVA  227 (291)
Q Consensus       200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~  227 (291)
                        .+.|.|..-....+..|+|.+.+...
T Consensus        69 --~S~L~v~~~~W~~~~~ytC~V~H~~~   94 (107)
T d1c5cl2          69 --SSTLTLSKADYEKHKVYACEVTHQGL   94 (107)
T ss_dssp             --EEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred             --EEEEEECHHHhCCCCEEEEEEEECCC
Confidence              34566666655666678888887653

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.07  E-value=4.3e-06  Score=52.31  Aligned_cols=76  Identities=22%  Similarity=0.396  Sum_probs=49.2

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------C-CeeE-----eceE--EeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------G-DRFV-----MGQY--MSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~-~~~~-----~~~~--~~~~~~~~~~l~i~   67 (291)
                      .++....+.+|++++|.|.+.+..  ...+.|++  .|+.++       . ....     ..+.  ..........|.+.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~   84 (130)
T d1rzga1           5 VQSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELS   84 (130)
T ss_dssp             EECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeee
Confidence            455667799999999999998743  34588987  333221       1 1100     0111  11233445679999


Q ss_pred             ecCCCCCeEEEEEEe
Q psy14540         68 SVRVEDSGIYQCTAT   82 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~   82 (291)
                      +++.+|++.|.|.-.
T Consensus        85 sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          85 SLRSEDTAVFYCASP   99 (130)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ecCCCccEEEEEEEe
Confidence            999999999999753

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.07  E-value=1.4e-05  Score=49.67  Aligned_cols=85  Identities=19%  Similarity=0.223  Sum_probs=47.0

Q ss_pred             ceeecCCCceEEEEEeeCCC-CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        115 SIKVHSGDRAGVQCLVTKGD-PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      .+.+.+|+.++|.|...... ....+.||+....    ....          +.+......            .......
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g----~~~~----------~l~~~~~~~------------~~~~~~~   62 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPG----KAPK----------LLIYYNDLL------------PSGVSDR   62 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTT----SCCE----------EEEBTTTBC------------CTTCCTT
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecc----cceE----------EEEEEeeee------------ccCCCCc
Confidence            47888999999999874332 3467999984311    0000          111000000            0011112


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNT  225 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  225 (291)
                      +...-......|.|.++..+|++.|-|.+...
T Consensus        63 ~~~~~~~~~~~L~I~~v~~~DsA~YyCA~~~~   94 (114)
T d2rhea_          63 FSASKSGTSASLAISGLESEDEADYYCAAWND   94 (114)
T ss_dssp             EEEEEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ceecCCCCeeeeEecccCcccCceEEEeecCC
Confidence            22233344567888888888888888877653

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.06  E-value=8.5e-06  Score=51.45  Aligned_cols=72  Identities=17%  Similarity=0.293  Sum_probs=47.9

Q ss_pred             ecceeeeecCCcEEEEEEecCCC----CCeeEEEE--CCeecC-------C----------CeeEeceEEeeccceEEEE
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNP----TPHISWKL--DGYPLA-------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~--~~~~~~-------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      +.....+++|++++|.|.+.+..    ...+.|++  .|+.+.       .          +++.+   ..........|
T Consensus         6 esg~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rfti---s~d~s~~~~~L   82 (132)
T d1tjgh1           6 ESGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTI---TKDTSKNQVVL   82 (132)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEE---EEETTTTEEEE
T ss_pred             eECCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeeccee---cccccccEEEc
Confidence            44456799999999999987632    23588997  333221       1          11111   11233445779


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      +|.+++.+|++.|.|...
T Consensus        83 ~i~~l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          83 VMTRVSPVDTATYFCAHR  100 (132)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             ccccCCcccceEEEEEEe
Confidence            999999999999999765

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.05  E-value=7.1e-06  Score=50.75  Aligned_cols=73  Identities=25%  Similarity=0.421  Sum_probs=49.1

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC---------C-----------CeeEeceEEeeccceEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA---------G-----------DRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~---------~-----------~~~~~~~~~~~~~~~~~   62 (291)
                      ++.....+++|++++|.|.+.+..  ...+.|++  .|+.+.         +           .++.+   .........
T Consensus         5 ~esg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRfti---SrD~s~nt~   81 (122)
T d1q9rb1           5 VESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTI---SRDNSQSIL   81 (122)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEE---EEETTTTEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeeccee---eeeccccee
Confidence            344556799999999999998743  33588987  343221         0           11111   112334557


Q ss_pred             EEEEeecCCCCCeEEEEEEe
Q psy14540         63 HVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~   82 (291)
                      .|++.+++.+|++.|.|.-.
T Consensus        82 ~L~~~sL~~eDTAvYYCar~  101 (122)
T d1q9rb1          82 YLQMNTLRAEDSATYYCARD  101 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEEC
T ss_pred             ccceeeeccCcceEEEEEec
Confidence            79999999999999999864

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.05  E-value=1.2e-05  Score=49.49  Aligned_cols=29  Identities=21%  Similarity=0.447  Sum_probs=22.8

Q ss_pred             ceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      .+.+.+|++++|.|.. .......+.||+.
T Consensus         9 sl~~~~G~svtl~C~~-~~~~~~~i~WYrQ   37 (109)
T d1w72l1           9 SVSVAPGQTARITCGG-NNIGSRSVHWYQQ   37 (109)
T ss_dssp             EEEECTTSCEEEEEEC-TTGGGSCCEEEEE
T ss_pred             eEEECCCCCEEEEEEc-CCCCCcceeeeec
Confidence            4778899999999996 4444557999984

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.05  E-value=8.4e-06  Score=50.88  Aligned_cols=76  Identities=22%  Similarity=0.372  Sum_probs=48.9

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------CC-eeE-----ece--EEeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------GD-RFV-----MGQ--YMSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~~-~~~-----~~~--~~~~~~~~~~~l~i~   67 (291)
                      ++.....+.+|++++|.|.+.+..  ...+.|++  .|+.++       .. ...     ..+  ...........|+|.
T Consensus         5 ~esG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~   84 (127)
T d2fb4h1           5 VQSGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMD   84 (127)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeee
Confidence            345556789999999999998732  34588887  333221       11 000     011  112334455779999


Q ss_pred             ecCCCCCeEEEEEEe
Q psy14540         68 SVRVEDSGIYQCTAT   82 (291)
Q Consensus        68 ~~~~~d~G~y~C~~~   82 (291)
                      +++.+|++.|.|.-.
T Consensus        85 ~L~~eDTA~YYCAr~   99 (127)
T d2fb4h1          85 SLRPEDTGVYFCARD   99 (127)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eeeecceeEEEEEEe
Confidence            999999999999754

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.05  E-value=1.4e-05  Score=49.85  Aligned_cols=75  Identities=21%  Similarity=0.236  Sum_probs=48.8

Q ss_pred             eecceeeeecCCcEEEEEEecCCC---CCeeEEEE--CCeecC-------CCeeEe-------ceEEeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP---TPHISWKL--DGYPLA-------GDRFVM-------GQYMSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~--~~~~~~-------~~~~~~-------~~~~~~~~~~~~~l~i~   67 (291)
                      ++.....+++|+++.|.|.+.+..   ...+.|++  .|+.+.       ......       .............|+|.
T Consensus         5 ~eSG~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~   84 (127)
T d3cx5j1           5 QESGAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLN   84 (127)
T ss_dssp             EEEECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeeccee
Confidence            344556789999999999998743   23588987  343321       111000       00111234455779999


Q ss_pred             ecCCCCCeEEEEEE
Q psy14540         68 SVRVEDSGIYQCTA   81 (291)
Q Consensus        68 ~~~~~d~G~y~C~~   81 (291)
                      +++.+|++.|.|.-
T Consensus        85 ~l~~eDtAvYyCAr   98 (127)
T d3cx5j1          85 SVTTEDTATYYCAR   98 (127)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccccceEEEeee
Confidence            99999999999974

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.05  E-value=2.2e-05  Score=48.76  Aligned_cols=33  Identities=18%  Similarity=0.472  Sum_probs=23.9

Q ss_pred             CCcceeecCCCceEEEEEeeCC----CCCceeEEeEC
Q psy14540        112 NSRSIKVHSGDRAGVQCLVTKG----DPPLTISWLKN  144 (291)
Q Consensus       112 ~~~~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~  144 (291)
                      .+..+.+.+|+.++|.|....+    .....+.||+.
T Consensus         7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq   43 (112)
T d1mjul1           7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQ   43 (112)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEEC
Confidence            3455778899999999987432    22457999973

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.05  E-value=2e-05  Score=48.87  Aligned_cols=32  Identities=22%  Similarity=0.385  Sum_probs=22.5

Q ss_pred             CcceeecCCCceEEEEEeeCCC---CCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGD---PPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~---p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|......   ....+.||+.
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq   42 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQ   42 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEc
Confidence            3456788999999999863222   2335999983

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.04  E-value=1.5e-05  Score=48.79  Aligned_cols=30  Identities=10%  Similarity=0.397  Sum_probs=22.7

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |..+.+.+|++++|.|... . ....+.||+.
T Consensus         7 P~~l~~~~G~~vtl~C~~s-~-~~~~~~WYrQ   36 (104)
T d1yqvl1           7 PAIMSASPGEKVTMTCSAS-S-SVNYMYWYQQ   36 (104)
T ss_dssp             SSEEEECTTCCEEEEEEES-S-CCSCCEEEEE
T ss_pred             CCeEEECCCCCEEEEEEeC-C-CCCccEEEEe
Confidence            4557788999999999873 3 3346899984

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.04  E-value=4.3e-06  Score=51.85  Aligned_cols=73  Identities=27%  Similarity=0.427  Sum_probs=48.7

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------C-----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------G-----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~-----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      .+.....+++|++++|.|.+.+..  ...+.|++  .|+.++       .           +++.+.   .........|
T Consensus         5 ~esG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiS---rD~s~~t~yL   81 (122)
T d1bz7b1           5 VESGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTIS---RDNPKNTLFL   81 (122)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEE---EEGGGTEEEE
T ss_pred             eeECCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEe---ccCCccEeEe
Confidence            344556789999999999998743  34588987  333221       1           112211   1233455779


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      ++.+++.+|++.|.|...
T Consensus        82 ~m~sL~~eDTAvYYCAr~   99 (122)
T d1bz7b1          82 QMTSLRSEDTAIYYCTRG   99 (122)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eeeeecccCceEEEeecC
Confidence            999999999999999754

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=98.04  E-value=7.9e-06  Score=49.29  Aligned_cols=70  Identities=14%  Similarity=0.102  Sum_probs=39.2

Q ss_pred             cCCcEEEEEEecC-CC-CCeeEEEECCeecCCCe---eEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540         16 PGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDR---FVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV   85 (291)
Q Consensus        16 ~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   85 (291)
                      ....++|.|.+.+ .| ...|+|++||+.+....   ..........+..+.......+...+...|+|.+.+..
T Consensus        13 ~~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (98)
T d1u58a1          13 REGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGIA   87 (98)
T ss_dssp             SSSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEGG
T ss_pred             CCCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            3457999999998 33 56799999987654211   11111111122222222223345555568999998543

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.03  E-value=4.4e-06  Score=51.50  Aligned_cols=77  Identities=22%  Similarity=0.381  Sum_probs=49.6

Q ss_pred             eeecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC---------CC-eeEe-----c--eEEeeccceEEEE
Q psy14540          6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA---------GD-RFVM-----G--QYMSLHGDVISHV   64 (291)
Q Consensus         6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~---------~~-~~~~-----~--~~~~~~~~~~~~l   64 (291)
                      +++.....+++|++++|.|.+.+..  ...+.|++  .|+.++         +. ....     .  ............|
T Consensus         4 L~eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL   83 (121)
T d1nfdf1           4 LVESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYL   83 (121)
T ss_dssp             EEEECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEE
T ss_pred             EeeECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeec
Confidence            3455667899999999999998743  33478987  343221         11 0000     0  0111223455679


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      .+.+++.+|++.|.|.-.
T Consensus        84 ~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          84 QMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             EEESCCGGGCEECEEEEE
T ss_pred             eecccCCCcceEEEEecc
Confidence            999999999999999643

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.03  E-value=2.2e-05  Score=49.02  Aligned_cols=30  Identities=10%  Similarity=0.277  Sum_probs=23.2

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      +..+.+.+|+.++|.|...  .....+.||+.
T Consensus         6 P~~~~~~~G~svtl~C~~s--~~~~~~~WYrQ   35 (114)
T d1ogae1           6 PKYLFRKEGQNVTLSCEQN--LNHDAMYWYRQ   35 (114)
T ss_dssp             CSEEEEETTCCEEECCEEC--SCCSEEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEEe--cCCCcEEEEee
Confidence            3456788999999999973  34468999983

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=4e-06  Score=50.51  Aligned_cols=30  Identities=10%  Similarity=0.212  Sum_probs=23.3

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP  147 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~  147 (291)
                      ..+..|++|+|.|..  ..+...+.++++|..
T Consensus        13 ~~V~~G~~VTL~C~~--~~~~~~f~L~keg~~   42 (96)
T d1ugna1          13 SVITQGSPVTLRCQG--GQETQEYRLYREKKT   42 (96)
T ss_dssp             SEEETTCCEEEEEEC--CTTCCCEEEEESSSC
T ss_pred             CccCCCCcEEEEEeC--CCCCCEEEEEECCCC
Confidence            457799999999996  345567888898753

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=1.1e-05  Score=49.30  Aligned_cols=72  Identities=17%  Similarity=0.341  Sum_probs=45.7

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  198 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~  198 (291)
                      .++.++|.|.+.+.+| ...|+|.+||.......               ......+..|.|..                 
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~---------------~~~~~~~~dgtys~-----------------   65 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK---------------TTPPVLDSDGSFFL-----------------   65 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE---------------ECCCEECTTSCEEE-----------------
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeE---------------EcceEECCCCCEEE-----------------
Confidence            4678999999976677 46999999998754211               01111223455543                 


Q ss_pred             eccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        199 NEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       199 ~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                         .+.|.+..-..+.+-.|+|.+.+..
T Consensus        66 ---~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          66 ---YSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             ---EEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             ---EEEEEECHHHcCCCCEEEEEEEeCC
Confidence               3456666655566667888888765

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.03  E-value=2.4e-05  Score=48.40  Aligned_cols=30  Identities=17%  Similarity=0.462  Sum_probs=23.1

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |....+.+|++++|.|....+  ...+.||+.
T Consensus         8 P~~~~~~~G~~vtl~C~~s~~--~~~~~WYrQ   37 (110)
T d2aq2a1           8 PRNKVAVTGEKVTLSCQQTNN--HNNMYWYRQ   37 (110)
T ss_dssp             CSEEEECTTCCEEEEEEESSC--CSEEEEEEE
T ss_pred             CCeEEEcCCCCEEEEEEECCC--cCcEEEEEE
Confidence            445678899999999987433  457999983

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.02  E-value=7.9e-06  Score=51.43  Aligned_cols=72  Identities=14%  Similarity=0.233  Sum_probs=45.3

Q ss_pred             eecCCcEEEEEEecC-CC---CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540         14 LQPGPPVSLKCIATG-NP---TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus        14 v~~g~~v~l~C~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      +..++.++|.|.+.+ .|   ...++|+++|..+......... ....+  ...+.|.|..-.+.....|+|.|.+...
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~-~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHR-EDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  106 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCE-EECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccE-ECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCC
Confidence            456889999999987 34   3578999999887632221111 11111  2345566655555555689999997653

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=2.4e-05  Score=49.07  Aligned_cols=31  Identities=13%  Similarity=0.225  Sum_probs=22.4

Q ss_pred             cceeecCCCceEEEEEeeCCCCC--ceeEEeEC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPP--LTISWLKN  144 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~  144 (291)
                      ..+.+.+|+.++|.|....+...  ..+.||+.
T Consensus         7 ~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ   39 (117)
T d1dqta_           7 SVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQ   39 (117)
T ss_dssp             SEEECCTTSCEEEEEEEESCCTTCEEEEEEEEE
T ss_pred             CEEEEcCCCcEEEEEECccCCcccceeEEEEEe
Confidence            34677899999999997544332  24789984

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.00  E-value=2.1e-05  Score=48.89  Aligned_cols=30  Identities=13%  Similarity=0.370  Sum_probs=22.7

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |....+.+|+.++|.|....  ....+.||+.
T Consensus         6 P~~~~~~~G~svtl~C~~~~--~~~~i~WYrQ   35 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS--GHVSLFWYQQ   35 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT--TCCEEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEECC--CCCEEEeeee
Confidence            34467889999999998633  3457999983

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.00  E-value=3.9e-05  Score=47.59  Aligned_cols=32  Identities=19%  Similarity=0.308  Sum_probs=23.5

Q ss_pred             CcceeecCCCceEEEEEeeCCC--CCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGD--PPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~  144 (291)
                      |..+.+.+|++++|.|....+.  ....+.||+.
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ   40 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQ   40 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeee
Confidence            4557889999999999874332  2346899983

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=1.9e-05  Score=46.70  Aligned_cols=32  Identities=25%  Similarity=0.567  Sum_probs=25.6

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEeccCC
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSD  151 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  151 (291)
                      .++.++|.|.+.+.+| ...++|.++|+.+...
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~   46 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQD   46 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCC
Confidence            4568999999977677 4589999999887644

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=4e-06  Score=51.35  Aligned_cols=79  Identities=13%  Similarity=0.200  Sum_probs=48.2

Q ss_pred             ceeecceeeeecCCcEEEEEEecC-CCC---CeeEEEECCeecCCCeeEeceEEeecc---ceEEEEEEeecCCCCCeEE
Q psy14540          5 LIYKFIQQTLQPGPPVSLKCIATG-NPT---PHISWKLDGYPLAGDRFVMGQYMSLHG---DVISHVNISSVRVEDSGIY   77 (291)
Q Consensus         5 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~G~y   77 (291)
                      ++..|....+..++.++|.|.+.+ .|.   ..+.|++++...........  ....+   ...+.|.|..-.+.....|
T Consensus         4 ~l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~--~~~~~gt~s~~S~L~v~~~~w~~g~~~   81 (103)
T d1fp5a1           4 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKE--EKQRNGTLTVTSTLPVGTRDWIEGETY   81 (103)
T ss_dssp             EEECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEE--EEETTTEEEEEEEEECCHHHHHTTCCE
T ss_pred             EEeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEccc--EECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            455665556777899999999987 443   35678888766553222211  11112   2345566655444445689


Q ss_pred             EEEEeCCC
Q psy14540         78 QCTATNRV   85 (291)
Q Consensus        78 ~C~~~~~~   85 (291)
                      +|++.+..
T Consensus        82 tC~V~H~~   89 (103)
T d1fp5a1          82 QCRVTHPH   89 (103)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEECC
Confidence            99998754

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.99  E-value=5.1e-05  Score=47.15  Aligned_cols=29  Identities=17%  Similarity=0.458  Sum_probs=22.3

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      +....+.+|++++|.|....  ....+.||+
T Consensus         7 P~~~~~~~G~~v~l~C~~~~--~~~~~~WYr   35 (113)
T d1j8he1           7 SRYLVKRTGEKVFLECVQDM--DHENMFWYR   35 (113)
T ss_dssp             CSEEEEETTCCEEECEEESS--CCSEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEEcC--CccEEEeEE
Confidence            34467889999999998633  345789998

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.99  E-value=2.8e-05  Score=48.51  Aligned_cols=29  Identities=14%  Similarity=0.445  Sum_probs=22.5

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      +..+.+.+|+.++|.|... + ....+.||+
T Consensus         7 P~~~~~~~G~svtl~C~~s-~-~~~~~~WYr   35 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSS-S-VFSSLQWYR   35 (115)
T ss_dssp             CSEEEEETTCCEEEEEECS-S-CCSCEEEEE
T ss_pred             CCeEEECCCCCEEEEEEEC-C-CCceEEEEe
Confidence            3457788999999999974 3 234799998

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.98  E-value=3.1e-06  Score=54.11  Aligned_cols=81  Identities=17%  Similarity=0.288  Sum_probs=50.5

Q ss_pred             ecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540        118 VHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL  196 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  196 (291)
                      +..+..++|.|.+.+.+| ...|+|++||+.+.......         ............|.|+.               
T Consensus        17 ~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~---------~~~~~~~~~~~d~tys~---------------   72 (127)
T d1ogae2          17 ISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTD---------PQPLKEQPALNDSRYSL---------------   72 (127)
T ss_dssp             HHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEEC---------SSCEESCTTSTTCCEEE---------------
T ss_pred             hccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEec---------ceeeeecccCCCCeEEE---------------
Confidence            345678899999976676 45899999998875431100         00111222344566654               


Q ss_pred             EEeccceEEEEeeeecCCCe-eEEEEeeeCCc
Q psy14540        197 RVNEYTSSLSIATLSTGHSG-NYTCVASNTVA  227 (291)
Q Consensus       197 ~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~~  227 (291)
                           .+.|.+......+.| .|+|.+.+...
T Consensus        73 -----sS~L~v~~~~W~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          73 -----SSRLRVSATFWQNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             -----EEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             -----EEEEEECHHHhCCCCCEEEEEEEECCC
Confidence                 345666666655644 69999988653

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.98  E-value=3e-05  Score=46.64  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=23.1

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEeccCC
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSD  151 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  151 (291)
                      .++..+|.|.+.+.+| ...+.|.+||.++...
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~   47 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAG   47 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCC
Confidence            4667789999977777 5799999999877543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.97  E-value=1.5e-05  Score=49.49  Aligned_cols=73  Identities=21%  Similarity=0.344  Sum_probs=48.8

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------C-----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------G-----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~-----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      ++.....+++|++++|.|.+.+..  ...+.|++  .|+.++       .           .++.+.   .........|
T Consensus         5 ~eSG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiS---rD~s~~t~~L   81 (125)
T d1op3h1           5 VESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVS---RDDLEDFVYL   81 (125)
T ss_dssp             EEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEE---EETTTTEEEE
T ss_pred             eeECCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEe---ccCccceEee
Confidence            344556789999999999998733  34588987  333221       0           112221   1233455779


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      +|.+++.+|++.|.|...
T Consensus        82 qm~sL~~eDTAvYYCAr~   99 (125)
T d1op3h1          82 QMHKMRVEDTAIYYCARK   99 (125)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eeeccCCccceeEeEeec
Confidence            999999999999999754

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.97  E-value=1.5e-05  Score=50.03  Aligned_cols=73  Identities=21%  Similarity=0.411  Sum_probs=48.8

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------C----------CeeEeceEEeeccceEEEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------G----------DRFVMGQYMSLHGDVISHV   64 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------~----------~~~~~~~~~~~~~~~~~~l   64 (291)
                      ++.....+++|+++.|.|.+.+..  ...+.|++  .|+.++        .          .++.+   ..........|
T Consensus         4 ~esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~ti---s~D~s~~t~~L   80 (133)
T d1rzfh1           4 VQSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTI---SADESTRTVYL   80 (133)
T ss_dssp             EECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEE---EEETTTTEEEE
T ss_pred             eeECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEE---EeccCcceeEE
Confidence            345556799999999999998743  33488887  333221        1          11111   11233455779


Q ss_pred             EEeecCCCCCeEEEEEEe
Q psy14540         65 NISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        65 ~i~~~~~~d~G~y~C~~~   82 (291)
                      ++.+++.+|++.|.|.-.
T Consensus        81 ~~~~L~~eDtA~YYCAr~   98 (133)
T d1rzfh1          81 HLRGLRSDDTAVYYCASN   98 (133)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eeccCCCCCCEEEEeeec
Confidence            999999999999999654

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.97  E-value=2.5e-05  Score=48.56  Aligned_cols=29  Identities=21%  Similarity=0.531  Sum_probs=22.3

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      ....+.+|+.++|.|....+  ...+.||+.
T Consensus         6 ~~~~~~~G~svtL~C~~~~~--~~~~~WYrQ   34 (112)
T d2cdeb1           6 RYLVIGTGKKITLECSQTMG--HDKMYWYQQ   34 (112)
T ss_dssp             SEEEEETTCCBCCEEEETTC--CSEEEEEEE
T ss_pred             CEEEECCCCCEEEEEEEeCC--cccEEEEEE
Confidence            44678899999999997433  457999984

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.96  E-value=1.2e-05  Score=49.99  Aligned_cols=75  Identities=23%  Similarity=0.360  Sum_probs=48.0

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeec------C--CCeeE--e---ce--EEeeccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPL------A--GDRFV--M---GQ--YMSLHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~------~--~~~~~--~---~~--~~~~~~~~~~~l~i~   67 (291)
                      .+.....+++|++++|.|.+.+..  ...+.|++  .|+.+      .  .....  .   .+  ...........|+|.
T Consensus         5 ~eSg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~   84 (126)
T d1dfbh1           5 VESGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMN   84 (126)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeee
Confidence            344556789999999999998743  34588987  33322      1  11100  0   01  111233455779999


Q ss_pred             ecCCCCCeEEEEEE
Q psy14540         68 SVRVEDSGIYQCTA   81 (291)
Q Consensus        68 ~~~~~d~G~y~C~~   81 (291)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtavYYCAr   98 (126)
T d1dfbh1          85 SLRAEDMALYYCVK   98 (126)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             eeccCcceEEEEEe
Confidence            99999999999964

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.96  E-value=3.2e-05  Score=47.82  Aligned_cols=32  Identities=22%  Similarity=0.361  Sum_probs=22.7

Q ss_pred             CcceeecCCCceEEEEEeeCCCC---CceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP---PLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|....+..   ...+.||+.
T Consensus         8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ   42 (111)
T d2gsia1           8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQ   42 (111)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCCccCCccceEEEEE
Confidence            44577889999999998733222   235899984

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.96  E-value=4.3e-05  Score=47.44  Aligned_cols=32  Identities=19%  Similarity=0.428  Sum_probs=23.1

Q ss_pred             CcceeecCCCceEEEEEeeCC----CCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKG----DPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|.....    .....+.||+.
T Consensus         9 P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   44 (113)
T d1n4xl_           9 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQ   44 (113)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEeccccccCCCceEeEEEec
Confidence            445778899999999997332    12246999983

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=1.8e-05  Score=49.63  Aligned_cols=31  Identities=16%  Similarity=0.391  Sum_probs=23.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      +..+.+.+|+.++|.|.. .......+.||+.
T Consensus         8 P~sv~~~~G~svtl~C~~-s~~~~~~i~WYrQ   38 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKG-SQNINNYLAWYQQ   38 (119)
T ss_dssp             TSEECCCTTCCEEEEEEC-SSCCBTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEe-CCCCcceeEEeee
Confidence            345678899999999987 4444567999984

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.95  E-value=3.1e-05  Score=48.01  Aligned_cols=30  Identities=10%  Similarity=0.299  Sum_probs=22.5

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |....+.+|++++|.|....  ....+.||+.
T Consensus         6 P~~~~~~~G~svtl~C~~~~--~~~~~~WYrQ   35 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPIS--GHDNLYWYRR   35 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCT--TCSEEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECC--CCceEEEEEE
Confidence            34467889999999998632  3457999973

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=2.9e-06  Score=51.99  Aligned_cols=78  Identities=13%  Similarity=0.251  Sum_probs=46.8

Q ss_pred             eeecceee-eecCCcEEEEEEecC-CC---CCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeEE
Q psy14540          6 IYKFIQQT-LQPGPPVSLKCIATG-NP---TPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGIY   77 (291)
Q Consensus         6 ~~~~~~~~-v~~g~~v~l~C~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y   77 (291)
                      ++.|.... +..+..++|.|.+.+ .|   ...++|+++|..+....... . ....++   ..+.|.|....+.....|
T Consensus         4 l~pPs~~~~~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~-~-~~~~~gtys~~S~L~v~~~~W~~g~~~   81 (103)
T d1i1ca1           4 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHA-P-EKQSNSTLRSVSELPIVERDWLNGKTF   81 (103)
T ss_dssp             EECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECC-C-EECTTSCEEEEEEEECCHHHHHTTCCE
T ss_pred             EECcChHHHhccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECC-c-EECCCCCEEEEEEEEECHHHhcCCCEE
Confidence            44554433 446778999999986 34   35789999998766332211 1 111222   235565555444444579


Q ss_pred             EEEEeCCC
Q psy14540         78 QCTATNRV   85 (291)
Q Consensus        78 ~C~~~~~~   85 (291)
                      +|.+.+..
T Consensus        82 tC~V~H~~   89 (103)
T d1i1ca1          82 KCKVNSGA   89 (103)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEeCC
Confidence            99998754

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.95  E-value=7.2e-06  Score=49.30  Aligned_cols=31  Identities=16%  Similarity=0.261  Sum_probs=24.9

Q ss_pred             CCCceEEEEEeeCCCCCc-eeEEeECCEeccC
Q psy14540        120 SGDRAGVQCLVTKGDPPL-TISWLKNGLPILS  150 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~  150 (291)
                      .++.++|.|.+.+.+|.. .++|++++..+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~   46 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQG   46 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTT
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCC
Confidence            356799999998778855 9999999887643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.94  E-value=1.7e-05  Score=49.15  Aligned_cols=31  Identities=10%  Similarity=0.252  Sum_probs=23.7

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      +..+.+.+|+.++|.|... ......+.||+.
T Consensus         7 p~~~~~~~G~~vtl~C~~~-~~~~~~~~WYrQ   37 (110)
T d1ac6a_           7 EGQVALSEEDFLTIHCNYS-ASGYPALFWYVQ   37 (110)
T ss_dssp             CSEEEEETTEEEEECEEEE-CSSCCEEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEec-CCCCcceEEEEc
Confidence            4457888999999999873 444457999984

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.93  E-value=1.2e-06  Score=52.98  Aligned_cols=27  Identities=15%  Similarity=0.541  Sum_probs=21.1

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      +.|.+|+.++|.|... . ....+.||+.
T Consensus         3 lsV~eG~~vtL~C~~~-~-~~~~i~WYrQ   29 (96)
T d1ymmd1           3 LSIQEGENATMNCSYK-T-SINNLQWYRQ   29 (96)
T ss_dssp             CCCSSCCCCCBCCBCS-S-CEEEEEEECC
T ss_pred             ceECCCCCEEEEEEEe-C-CcccEEEEEE
Confidence            4678999999999873 3 3457999983

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.93  E-value=4e-06  Score=51.33  Aligned_cols=75  Identities=23%  Similarity=0.427  Sum_probs=48.0

Q ss_pred             eecceeeeecCCcEEEEEEecC--CCCCeeEEEE--CCeecC--------CCeeE-----eceEEe--eccceEEEEEEe
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATG--NPTPHISWKL--DGYPLA--------GDRFV-----MGQYMS--LHGDVISHVNIS   67 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~--~~~~~~--------~~~~~-----~~~~~~--~~~~~~~~l~i~   67 (291)
                      .+.....+++|++++|.|.+.+  .....+.|++  .|+.+.        .....     ..+...  ........|++.
T Consensus         5 ~esG~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~   84 (117)
T d1b2wh1           5 VQSGGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMN   84 (117)
T ss_dssp             EECCCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEEC
T ss_pred             eeECCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeec
Confidence            3455567999999999999986  2344678887  333221        11100     011111  123445779999


Q ss_pred             ecCCCCCeEEEEEE
Q psy14540         68 SVRVEDSGIYQCTA   81 (291)
Q Consensus        68 ~~~~~d~G~y~C~~   81 (291)
                      +++.+|++.|.|.-
T Consensus        85 sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          85 SLRPEDTAVYYCAR   98 (117)
T ss_dssp             SCCGGGCEEEECCE
T ss_pred             cccCCcceEEEEcc
Confidence            99999999999964

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=8.9e-06  Score=50.78  Aligned_cols=29  Identities=17%  Similarity=0.240  Sum_probs=21.3

Q ss_pred             eeecCCCceEEEEEeeC-CCCCceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTK-GDPPLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~-~~p~~~~~W~~~  144 (291)
                      ..+.+|++++|.|.... ......+.|++.
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq   38 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQII   38 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEE
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEEC
Confidence            66789999999998731 123457889983

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=2e-05  Score=47.88  Aligned_cols=72  Identities=21%  Similarity=0.362  Sum_probs=45.1

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV  198 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~  198 (291)
                      ..+.++|.|.+.+.+| ...|.|.++|..+.....               .....+..|.|.-                 
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~---------------~~~~~~~dgtys~-----------------   64 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKN---------------TQPIMDTDGSYFV-----------------   64 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEE---------------CCCEECTTSCEEE-----------------
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEE---------------eeeecCCCCcEEE-----------------
Confidence            3467899999976667 568999999987643110               0111223355543                 


Q ss_pred             eccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        199 NEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       199 ~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                         .+.|.+..-....+..|+|.+.+..
T Consensus        65 ---~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          65 ---YSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             ---EEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             ---EEEEEECHHHhCCCCEEEEEEEECC
Confidence               3456665555556677888887764

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.92  E-value=3.7e-05  Score=47.63  Aligned_cols=32  Identities=16%  Similarity=0.491  Sum_probs=23.2

Q ss_pred             CcceeecCCCceEEEEEeeCCC-CCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGD-PPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~  144 (291)
                      |..+.+.+|++++|.|...... ....+.|++.
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ   39 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQ   39 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEE
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeee
Confidence            3457889999999999873322 2345999984

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.91  E-value=4.7e-05  Score=47.23  Aligned_cols=28  Identities=18%  Similarity=0.388  Sum_probs=22.0

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      ....+.+|++++|.|....  ....+.||+
T Consensus         7 ~~~~~~~G~svtl~C~~s~--~~~~~~WYr   34 (112)
T d2bnub1           7 KFQVLKTGQSMTLQCAQDM--NHEYMSWYR   34 (112)
T ss_dssp             SEEEEETTCCEEEEEEESS--CCSEEEEEE
T ss_pred             CeEEECCCCCEEEEEEEEC--CccceEecc
Confidence            4467889999999998743  345799998

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.91  E-value=4.8e-05  Score=46.71  Aligned_cols=36  Identities=17%  Similarity=0.246  Sum_probs=27.9

Q ss_pred             ceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILS  150 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~  150 (291)
                      ...+..+..++|.|.+.+.+|. ..|.|.+||..+..
T Consensus        18 ~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~   54 (107)
T d1hxmb2          18 IAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTIL   54 (107)
T ss_dssp             GGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCC
T ss_pred             HHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccC
Confidence            3445667889999999776774 58999999987654

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.90  E-value=4.8e-05  Score=47.75  Aligned_cols=31  Identities=19%  Similarity=0.435  Sum_probs=23.0

Q ss_pred             CcceeecCCCceEEEEEeeCCC-CCceeEEeE
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGD-PPLTISWLK  143 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~  143 (291)
                      +..+.+.+|+.++|.|...... ....+.||+
T Consensus         8 ~~sv~v~~G~~vtL~C~~s~~~~~~~~~~Wyr   39 (120)
T d1hxma1           8 HQTVPVSIGVPATLRCSMKGEAIGNYYINWYR   39 (120)
T ss_dssp             CSEEEEETTCCEEEEEEECSSCGGGSEEEEEE
T ss_pred             CCCEEECCCCCEEEEEEEeccCccCCcCeEEE
Confidence            3456788999999999984332 235699997

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=2.8e-05  Score=46.57  Aligned_cols=31  Identities=23%  Similarity=0.485  Sum_probs=25.1

Q ss_pred             CCceEEEEEeeCCCC-CceeEEeECCEeccCC
Q psy14540        121 GDRAGVQCLVTKGDP-PLTISWLKNGLPILSD  151 (291)
Q Consensus       121 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~  151 (291)
                      ++.++|.|.+.+.+| ...++|.++|+.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~   46 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQD   46 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECGGG
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCC
Confidence            567899999977777 4589999999887653

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.89  E-value=2.7e-05  Score=47.92  Aligned_cols=84  Identities=20%  Similarity=0.241  Sum_probs=46.6

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS  193 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  193 (291)
                      ..+.+.+|+.++|.|.. .......+.||+...    ....          .+.+........            .....
T Consensus         7 ~s~~~~~G~svtl~C~~-~~~~~~~i~WYrQ~~----g~~p----------~~l~y~~~~~~~------------~~~~r   59 (108)
T d1nfde1           7 SSASVTVGETVKITCSG-DQLPKNFAYWFQQKS----DKNI----------LLLIYMDNKRPS------------GIPER   59 (108)
T ss_dssp             SEEEEETTSCCCEEEEE-TTGGGSCCEEEEECT----TCCE----------EEEEBTTTBCCT------------TSCTT
T ss_pred             CeeEECCCCCEEEEEEC-CCCCCccEEEEeccc----ccce----------eeeccccccccc------------cccce
Confidence            34678899999999987 343445789998321    0000          111111100000            11112


Q ss_pred             eEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540        194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASN  224 (291)
Q Consensus       194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  224 (291)
                      +..........|.|.++..+|+|.|-|.+..
T Consensus        60 f~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          60 FSGSTSGTTATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             EEEEEETTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred             eeecCCCCEeeeeEcCccccCCceEEEEeec
Confidence            2333444456778888888888888887654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=5.5e-05  Score=46.57  Aligned_cols=84  Identities=13%  Similarity=0.188  Sum_probs=47.2

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD  190 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  190 (291)
                      .+.+.+|+.++|.|....+..  ...+.||+..  +..                .+.+....            +.....
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p----------------~~l~y~~~------------~~~~~~   60 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLF----------------TGLIGGTN------------NRAPGV   60 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEE----------------EEEEETTT------------EECTTS
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccce----------------eeeeeeec------------eecccc
Confidence            467889999999999843332  2348999732  111                01111000            000111


Q ss_pred             CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                      ...+..........|.|.++..+|+|.|-|.+....
T Consensus        61 ~~rf~~s~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   96 (110)
T d1oaql_          61 PARFSGSLIGNKAALTITGAQTEDEAIYFCALWYSN   96 (110)
T ss_dssp             CTTEEEEEETTEEEEEEESCCGGGCEEEEEEEEETT
T ss_pred             ceeeeecccccceeeecCCCCccccEeEEEEcccCC
Confidence            122333334455678888888888888888776543

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.89  E-value=2.2e-05  Score=49.22  Aligned_cols=73  Identities=23%  Similarity=0.465  Sum_probs=48.6

Q ss_pred             eecceeeeecCCcEEEEEEecCCC--CCeeEEEE--CCeecC--------------------CCeeEeceEEeeccceEE
Q psy14540          7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKL--DGYPLA--------------------GDRFVMGQYMSLHGDVIS   62 (291)
Q Consensus         7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~--------------------~~~~~~~~~~~~~~~~~~   62 (291)
                      .+.....+++|++++|.|.+.+..  ...+.|++  .|+.++                    .+++.+   .........
T Consensus         5 ~esG~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~ti---S~D~s~nt~   81 (131)
T d3c2ah1           5 VESGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTI---SRDDSKNTL   81 (131)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEE---EEEGGGTEE
T ss_pred             eeECCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEE---eccccccee
Confidence            344556789999999999998733  34588887  333211                    011111   112334557


Q ss_pred             EEEEeecCCCCCeEEEEEEe
Q psy14540         63 HVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        63 ~l~i~~~~~~d~G~y~C~~~   82 (291)
                      .|++.+++.+|++.|.|.-.
T Consensus        82 ~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          82 YLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeccccCCceEEEEecc
Confidence            79999999999999999743

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.4e-05  Score=48.49  Aligned_cols=27  Identities=19%  Similarity=0.384  Sum_probs=22.1

Q ss_pred             ccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540        200 EYTSSLSIATLSTGHSGNYTCVASNTV  226 (291)
Q Consensus       200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~  226 (291)
                      ..+.+|.|.+++.+|+|.|.|.+....
T Consensus        66 ~~~~sL~I~~v~~~D~G~Y~C~V~~~~   92 (110)
T d1ncna_          66 SDSWTLRLHNLQIKDKGLYQCIIHHKK   92 (110)
T ss_dssp             TTTTEEEECSCCGGGCEEEEEEEEEEC
T ss_pred             CCeEEEEECCCChhHCEEEEEEEEecC
Confidence            446789999999999999999986443

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.9e-05  Score=48.14  Aligned_cols=31  Identities=13%  Similarity=0.186  Sum_probs=22.3

Q ss_pred             cceeecCCCceEEEEEeeCCCCC--ceeEEeEC
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPP--LTISWLKN  144 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~  144 (291)
                      ..+.+.+|+.++|.|....+...  ..+.|++.
T Consensus         7 ~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ   39 (118)
T d1i8lc_           7 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQ   39 (118)
T ss_dssp             SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEE
T ss_pred             CEEEEeCCCcEEEEEEccccccccceeEEEEEE
Confidence            34677899999999998433322  25889984

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=2.3e-05  Score=47.10  Aligned_cols=64  Identities=27%  Similarity=0.490  Sum_probs=37.0

Q ss_pred             cCCcEEEEEEecCCC--CCeeEEEE--CCeecC-------C-----------CeeEeceEEeeccceEEEEEEeecCCCC
Q psy14540         16 PGPPVSLKCIATGNP--TPHISWKL--DGYPLA-------G-----------DRFVMGQYMSLHGDVISHVNISSVRVED   73 (291)
Q Consensus        16 ~g~~v~l~C~~~~~~--~~~v~W~~--~~~~~~-------~-----------~~~~~~~~~~~~~~~~~~l~i~~~~~~d   73 (291)
                      +|++++|.|.+.+..  ...+.|++  .|+.++       .           +++.+.   .........|+|.+++.+|
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS---~D~s~~t~~L~~~sL~~eD   77 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLT---VDKPSSTAYMQLSSLTSED   77 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEE---C----CEEEEEECCC---C
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEe---ccccccEEEeeeeeccccc
Confidence            589999999998743  34589997  343321       0           111111   1122345679999999999


Q ss_pred             CeEEEEEEe
Q psy14540         74 SGIYQCTAT   82 (291)
Q Consensus        74 ~G~y~C~~~   82 (291)
                      ++.|.|...
T Consensus        78 TAvYYCAr~   86 (103)
T d1oari_          78 SAVYYCARM   86 (103)
T ss_dssp             CSEEEEEEE
T ss_pred             cEEEEeEEE
Confidence            999999754

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=0.0001  Score=40.92  Aligned_cols=58  Identities=19%  Similarity=0.309  Sum_probs=39.9

Q ss_pred             eecCCcEEEEEEecCCC--CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540         14 LQPGPPVSLKCIATGNP--TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT   82 (291)
Q Consensus        14 v~~g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~   82 (291)
                      ...|..+.|.|.....+  ...-.|+|+|+.+..++...         ....+.|..  .+++|.|.|...
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~---------~~tey~V~~--~D~SGeY~CVFl   68 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG---------QKTEFKVDS--DDQWGEYSCVFL   68 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC---------SEEEEEECG--GGCCEEEEEEEE
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCC---------CceEEEEec--CCCCceEEEEEc
Confidence            35688999999998633  33478999999988433211         113345554  678999999965

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=4.5e-06  Score=51.13  Aligned_cols=82  Identities=16%  Similarity=0.355  Sum_probs=46.3

Q ss_pred             CCcce-eecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeE
Q psy14540          2 HPQLI-YKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGI   76 (291)
Q Consensus         2 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~   76 (291)
                      +|.+. +.|.... ..+..++|.|.+.+ .| ...|+|.+++....  ...........+  ...+.|.|..-.+ ....
T Consensus         5 ~PsV~~l~ps~~~-~~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~--~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~   80 (103)
T d1c5ch2           5 GPSVFPLAPSSKS-TSGGTAALGCLVKDYFPEPVTVSWNSGALTSG--VHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQT   80 (103)
T ss_dssp             CCEEEEECCCGGG-EETTEEEEEEEEEEEBSSCCEEEEGGGTBCTT--EEECCCEECTTSCEEEEEEEEEEGGGG-GTCC
T ss_pred             CCEEEEECCCchh-cCCCeEEEEEEEEeEeCCCeEEEECcCCCCCC--EEECCCeECCCCCEEEEEEEEECcccc-CCCe
Confidence            45543 3443332 34678999999987 33 56799987775432  111111111111  2335677766554 3457


Q ss_pred             EEEEEeCCCCc
Q psy14540         77 YQCTATNRVGS   87 (291)
Q Consensus        77 y~C~~~~~~~~   87 (291)
                      |+|.+.+....
T Consensus        81 ytC~V~H~~~~   91 (103)
T d1c5ch2          81 YICNVNHKPSN   91 (103)
T ss_dssp             CEEEEEEGGGT
T ss_pred             EEEEEEeCCCC
Confidence            99999875543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=7.6e-06  Score=50.31  Aligned_cols=72  Identities=15%  Similarity=0.289  Sum_probs=45.8

Q ss_pred             eeecCCcEEEEEEecC-CC---CCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540         13 TLQPGPPVSLKCIATG-NP---TPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGIYQCTATNRV   85 (291)
Q Consensus        13 ~v~~g~~v~l~C~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~   85 (291)
                      .+..++.++|.|.+.+ .|   ...+.|.+++..+....... . ....+.   ..+.|.|....+.....|+|.+.+..
T Consensus        14 ~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~-~-~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   91 (105)
T d1l6xa1          14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP-R-EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA   91 (105)
T ss_dssp             HHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECC-C-EECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             hhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECC-c-EECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCC
Confidence            4667899999999987 34   25688999998776433221 1 111222   23556665554445558999999765


Q ss_pred             C
Q psy14540         86 G   86 (291)
Q Consensus        86 ~   86 (291)
                      .
T Consensus        92 l   92 (105)
T d1l6xa1          92 L   92 (105)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.87  E-value=4.2e-05  Score=47.52  Aligned_cols=32  Identities=16%  Similarity=0.497  Sum_probs=22.7

Q ss_pred             CcceeecCCCceEEEEEeeCC-----CCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKG-----DPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~  144 (291)
                      |..+.+.+|++++|.|.....     .....+.||+.
T Consensus         8 P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq   44 (113)
T d1q9ra1           8 PSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQ   44 (113)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEec
Confidence            455778899999999986322     12245999984

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=1.5e-05  Score=50.11  Aligned_cols=32  Identities=16%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             CcceeecCCCceEEEEEeeCC---C--CCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKG---D--PPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~---~--p~~~~~W~~~  144 (291)
                      |..+.+.+|+.|+|.|.+...   .  ....+.|++.
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~   43 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYD   43 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEES
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEee
Confidence            345788899999999997421   1  1234567764

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.85  E-value=5.9e-05  Score=45.03  Aligned_cols=32  Identities=25%  Similarity=0.524  Sum_probs=25.4

Q ss_pred             CCceEEEEEeeCCCC-CceeEEeECCEeccCCC
Q psy14540        121 GDRAGVQCLVTKGDP-PLTISWLKNGLPILSDA  152 (291)
Q Consensus       121 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~  152 (291)
                      ++.++|.|.+.+.+| ...++|+++|..+....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~   47 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDT   47 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCe
Confidence            457899999977677 45899999999886543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.85  E-value=0.00018  Score=40.43  Aligned_cols=30  Identities=17%  Similarity=0.329  Sum_probs=24.3

Q ss_pred             cceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLK  143 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  143 (291)
                      +...+..|+.+.|.|.+..-.-.|.++|.+
T Consensus        11 S~hs~~~G~~f~leCPVkYC~~RPnVtWCK   40 (104)
T d1xaua_          11 SKHSAWTGELFKIECPVKYCVHRPNVTWCK   40 (104)
T ss_dssp             EEEEECTTSCEEEEEEEECSSSCCCEEEEE
T ss_pred             ceeeEecCCceEecCcchhhcCCCCcEEEE
Confidence            346788999999999996545578999987

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=6.5e-05  Score=45.18  Aligned_cols=66  Identities=20%  Similarity=0.168  Sum_probs=34.2

Q ss_pred             eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceE-EeccCCceEEEEEeeCCCCCceeEEEEE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEIT-IRSSGEYTSSLSIATLSTGHSGNYTCVA  183 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~  183 (291)
                      ..+..|++|+|.|..  ......+.++|+|.......... ..........+.|..+...|+|.|+|..
T Consensus        13 ~~v~~G~~VTL~C~~--~~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2          13 PVVNSGGNVTLQCDS--QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             SEEETTCCEEEEEEC--SSCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CccCCCCcEEEEeCC--CCCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEee
Confidence            357799999999986  34556888888876532211110 0011112344555556555655555544

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=1.9e-05  Score=48.11  Aligned_cols=71  Identities=13%  Similarity=0.346  Sum_probs=44.5

Q ss_pred             eecCCcEEEEEEecC-CCC--CeeEEEECCeecCCCeeEeceEEee--ccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540         14 LQPGPPVSLKCIATG-NPT--PHISWKLDGYPLAGDRFVMGQYMSL--HGDVISHVNISSVRVEDSGIYQCTATNRVG   86 (291)
Q Consensus        14 v~~g~~v~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~   86 (291)
                      ...++.++|.|.+.+ .|.  ..+.|.+++..+.....  ......  .....+.|.|....+.....|+|+|.+...
T Consensus        16 ~~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~--~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          16 ALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNF--PPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             SSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEEC--CCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             ccCCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEe--eeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            345788999999998 443  45789888765541111  111111  112446677877776666689999987544

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.80  E-value=8.4e-05  Score=45.94  Aligned_cols=32  Identities=22%  Similarity=0.537  Sum_probs=22.8

Q ss_pred             CcceeecCCCceEEEEEeeC----CCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTK----GDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~----~~p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|....    ......+.||+.
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ   43 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQ   43 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEc
Confidence            45577899999999998632    122346899974

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.77  E-value=5.9e-05  Score=46.83  Aligned_cols=30  Identities=23%  Similarity=0.567  Sum_probs=22.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |..+.+.+|+.++|.|....+  ...+.||+.
T Consensus         8 P~~~~~~~G~~v~l~C~~~~~--~~~~~WYrQ   37 (113)
T d1nfdb1           8 PRHIIKEKGGRSVLTCIPISG--HSNVVWYQQ   37 (113)
T ss_dssp             CSEEEEETTCCCEEEEECCTT--CCEEEEEEB
T ss_pred             CCEEEEeCCCCEEEEEEeCCC--CCEEEEEEE
Confidence            345678899999999986433  357999984

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=5.5e-05  Score=46.10  Aligned_cols=35  Identities=14%  Similarity=0.404  Sum_probs=25.0

Q ss_pred             eeecCCCceEEEEEeeCCCCC---ceeEEeECCEeccC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPP---LTISWLKNGLPILS  150 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~  150 (291)
                      ..+..++.++|.|.+.+.+|.   ..+.|++++.....
T Consensus        11 ~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~   48 (103)
T d1fp5a1          11 FDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVN   48 (103)
T ss_dssp             HHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCC
T ss_pred             HHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecc
Confidence            345567889999999666665   36778888776543

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.75  E-value=8.3e-05  Score=44.66  Aligned_cols=29  Identities=21%  Similarity=0.297  Sum_probs=22.9

Q ss_pred             CCceEEEEEeeCCCC-CceeEEeECCEecc
Q psy14540        121 GDRAGVQCLVTKGDP-PLTISWLKNGLPIL  149 (291)
Q Consensus       121 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~  149 (291)
                      ...++|.|.+.+.+| ...|.|.+||..+.
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~   43 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGG   43 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSC
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCcccc
Confidence            347899999977777 45899999987653

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.75  E-value=4.1e-05  Score=46.58  Aligned_cols=30  Identities=27%  Similarity=0.558  Sum_probs=23.9

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEecc
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPIL  149 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~  149 (291)
                      .++.++|.|.+.+.+| ...|.|.+||....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~   48 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTEL   48 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEcc
Confidence            4678999999976677 46899999997653

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.74  E-value=9.2e-06  Score=49.79  Aligned_cols=32  Identities=31%  Similarity=0.538  Sum_probs=25.2

Q ss_pred             CCCceEEEEEeeCCCCC-ceeEEeECCEeccCC
Q psy14540        120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD  151 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~  151 (291)
                      .++.++|.|.+.+.+|. ..|.|.+||..+...
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~   51 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDG   51 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSS
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCC
Confidence            35678999999766774 599999999987643

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.72  E-value=0.00015  Score=44.92  Aligned_cols=31  Identities=23%  Similarity=0.456  Sum_probs=23.9

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN  144 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~  144 (291)
                      |....+.+|+.++|.|.. .......+.||+.
T Consensus         8 P~~~~~~~G~~vtL~C~~-~~~~~~~~~WYrQ   38 (112)
T d1fo0b_           8 PRWRLVPRGQAVNLRCIL-KNSQYPWMSWYQQ   38 (112)
T ss_dssp             CSEEECCTTCCEEEEEEE-SCTTCCEEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEE-ecCCCCcEEEEeE
Confidence            345678899999999987 4444568999984

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=3.3e-05  Score=47.33  Aligned_cols=75  Identities=16%  Similarity=0.310  Sum_probs=45.9

Q ss_pred             ecCCCceEEEEEeeCCCCC---ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540        118 VHSGDRAGVQCLVTKGDPP---LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS  194 (291)
Q Consensus       118 ~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  194 (291)
                      +..++.++|.|.+.+.+|.   ..+.|.+++..+.....               .....+..|.|+.             
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~---------------~~~~~~~~gtys~-------------   66 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKT---------------KPREEQYNSTYRV-------------   66 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEE---------------CCCEECTTSCEEE-------------
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEE---------------CCcEECCCCcEEE-------------
Confidence            4467889999999655664   47789999987654311               1112233455554             


Q ss_pred             EEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540        195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA  227 (291)
Q Consensus       195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  227 (291)
                             .+.|.|..-.....-.|+|.+.+...
T Consensus        67 -------~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          67 -------VSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             -------EEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             -------EEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence                   23455555555556678888877553

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=3.7e-05  Score=46.81  Aligned_cols=29  Identities=28%  Similarity=0.591  Sum_probs=23.5

Q ss_pred             CCceEEEEEeeCCCCC-ceeEEeECCEecc
Q psy14540        121 GDRAGVQCLVTKGDPP-LTISWLKNGLPIL  149 (291)
Q Consensus       121 g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~  149 (291)
                      .+.++|.|.+.+.+|. ..|.|.++|.+..
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~   48 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQE   48 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeecc
Confidence            4678999999777774 6899999998753

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.70  E-value=3.9e-05  Score=44.12  Aligned_cols=53  Identities=28%  Similarity=0.572  Sum_probs=37.8

Q ss_pred             ecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeec-CCCCCeEEEEEEe
Q psy14540         15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV-RVEDSGIYQCTAT   82 (291)
Q Consensus        15 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~C~~~   82 (291)
                      ..|.+|+|+|...+  ...|.|.+++..+....-             ..|.+.+. ..+|+|.|.|...
T Consensus        12 ISGTtV~LTCP~~~--~~~I~Wkkn~~~i~g~~~-------------~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          12 ISGTSVELTCPLDS--DENLKWEKNGQELPQKHD-------------KHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EETTEEEEECSSCC--CTTCEEEETTEEECSCCC-------------SEEEEESCCTTTSCEEEEEECS
T ss_pred             EeCCEEEEECCCCC--CCceEEeeccccCCCCCC-------------cEEEEccccccccCcceEEecC
Confidence            47999999998654  246999999988773211             11456664 4579999999754

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.70  E-value=6e-05  Score=47.24  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=25.1

Q ss_pred             cCCCceEEEEEeeCCCC---CceeEEeECCEeccCC
Q psy14540        119 HSGDRAGVQCLVTKGDP---PLTISWLKNGLPILSD  151 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~  151 (291)
                      ..++.++|.|.+.+.+|   ...+.|+++|..+...
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~   65 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTA   65 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSST
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCC
Confidence            45788999999965555   3578999999887543

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.67  E-value=0.00038  Score=43.67  Aligned_cols=30  Identities=17%  Similarity=0.343  Sum_probs=21.9

Q ss_pred             ceeecCCCceEEEEEeeCC-CCCceeEEeEC
Q psy14540        115 SIKVHSGDRAGVQCLVTKG-DPPLTISWLKN  144 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~  144 (291)
                      .+...+|+.++|.|.+... .....+.||+.
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ   40 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRE   40 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEE
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEE
Confidence            4667789999999998422 23457899983

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.64  E-value=1.8e-05  Score=48.05  Aligned_cols=28  Identities=29%  Similarity=0.621  Sum_probs=22.3

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEe
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLP  147 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~  147 (291)
                      .++.++|.|.+.+.+| ...|.|.+++..
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~   47 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALS   47 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCc
Confidence            5688999999976677 468999887754

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.64  E-value=0.00025  Score=44.37  Aligned_cols=30  Identities=27%  Similarity=0.486  Sum_probs=21.4

Q ss_pred             ceeecCCCceEEEEEeeCCC-CCceeEEeEC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGD-PPLTISWLKN  144 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~  144 (291)
                      .+...+|+.++|.|.+.... ....+.||+.
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ   40 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFRSVTIHWYRQ   40 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEE
T ss_pred             EEEecCCCcEEEEEEEecccccCCcccEEEe
Confidence            46677899999999873221 2356899983

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.58  E-value=0.00016  Score=42.09  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=23.9

Q ss_pred             CceEEEEEeeCCCC-CceeEEeECCEeccCCC
Q psy14540        122 DRAGVQCLVTKGDP-PLTISWLKNGLPILSDA  152 (291)
Q Consensus       122 ~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~  152 (291)
                      +.++|.|.+.+.+| ...|.|.++|..+....
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~   45 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDP   45 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCC
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcE
Confidence            45789999977777 45899999998765443

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=6.9e-05  Score=45.77  Aligned_cols=32  Identities=25%  Similarity=0.373  Sum_probs=24.1

Q ss_pred             cCCCceEEEEEeeCCCC-CceeEEeECCEeccC
Q psy14540        119 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS  150 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~  150 (291)
                      ...+.++|.|.+.+.+| ...|+|.++|+.+..
T Consensus        19 ~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~   51 (105)
T d1dn0b2          19 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDIS   51 (105)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEEC
T ss_pred             CCCCceEEEEEEecccCCcEEEEEEECCccccC
Confidence            34678899999977777 468999998876543

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=0.00029  Score=43.17  Aligned_cols=30  Identities=13%  Similarity=0.245  Sum_probs=22.1

Q ss_pred             ceeecCCCceEEEEEeeC-CCCCceeEEeEC
Q psy14540        115 SIKVHSGDRAGVQCLVTK-GDPPLTISWLKN  144 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~-~~p~~~~~W~~~  144 (291)
                      ...+.+|++++|.|.... ......+.|++.
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq   34 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRL   34 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEEC
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEE
Confidence            356789999999999731 124557899984

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.56  E-value=6.3e-05  Score=45.82  Aligned_cols=32  Identities=19%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             cCCCceEEEEEeeCCCCC---ceeEEeECCEeccC
Q psy14540        119 HSGDRAGVQCLVTKGDPP---LTISWLKNGLPILS  150 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~  150 (291)
                      ..+...+|.|.+.+.+|.   ..+.|.++|..+..
T Consensus        14 ~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~   48 (103)
T d1i1ca1          14 GGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHT   48 (103)
T ss_dssp             TSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECC
T ss_pred             ccCCCcEEEEEEEeeECCCCCEEEEEEECCccccC
Confidence            356778999999655564   58899999987644

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.56  E-value=0.00012  Score=45.12  Aligned_cols=80  Identities=14%  Similarity=0.206  Sum_probs=42.8

Q ss_pred             CCccee-ecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCe
Q psy14540          2 HPQLIY-KFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSG   75 (291)
Q Consensus         2 ~p~~~~-~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G   75 (291)
                      +|.+.+ .|... ...++.++|.|.+.+ .| ...|+|.+++...   ...... ....++   ..+.|.|....+....
T Consensus        12 ~P~V~l~~p~~~-~~~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~---~~~~~~-~~~~dgtys~~S~L~v~~~~W~~~~   86 (111)
T d1pfca_          12 IPEVYLLPPPRN-ELSKKKVSLTCMITGFYPADINVEWDSSEPSD---YKNTPP-VFDTDGSFFLYSRLKVDTDAWNNGE   86 (111)
T ss_dssp             CCCCCBCCCCSC-CCCTTSCCEEEEEESCCSSCCEEESSSCCTTT---EEEEEE-ECCSSCCCEEEEEECCCSSCCHHHH
T ss_pred             CCEEEEECCCHH-HhcCCceEEEEEEEeeECCCcEEEEeeCCCCC---cEEccc-EECCCCcEEEEEEEEECHHHhCCCC
Confidence            465443 33322 234678999999998 33 4679998877421   111111 111122   2244444333322234


Q ss_pred             EEEEEEeCCCC
Q psy14540         76 IYQCTATNRVG   86 (291)
Q Consensus        76 ~y~C~~~~~~~   86 (291)
                      .|+|.+.+...
T Consensus        87 ~ytC~V~H~~l   97 (111)
T d1pfca_          87 SFTCSVMHEAL   97 (111)
T ss_dssp             CCEEEEEETTT
T ss_pred             EEEEEEEeCCC
Confidence            79999987643

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00015  Score=42.97  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=45.4

Q ss_pred             ecceeeeecCCcEEEEEEecCCCCCeeE-EEECCeecC-CC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540          8 KFIQQTLQPGPPVSLKCIATGNPTPHIS-WKLDGYPLA-GD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR   84 (291)
Q Consensus         8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~-W~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~   84 (291)
                      .|..+.+.+|+++.|.|.++ .|..+++ |..++..+. .+ .+..     ....+   ++|.+++..+.|.|.|.+...
T Consensus        11 ~p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~-----Dpk~G---f~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          11 IPEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIW-----DSRKG---FIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             SCEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEE-----ETTTE---EEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEE-----CCCCC---EEEeCCCcccCeEEEEEEEEC
Confidence            34556789999999999998 4555654 444555443 22 1111     11122   679999999999999999743

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=4.1e-05  Score=46.56  Aligned_cols=27  Identities=37%  Similarity=0.719  Sum_probs=19.2

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCE
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGL  146 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~  146 (291)
                      .++.++|.|.+.+.+| ...|.|..++.
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~   46 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSL   46 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCc
Confidence            5678999999976676 45899977664

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.44  E-value=0.0012  Score=40.70  Aligned_cols=29  Identities=10%  Similarity=0.292  Sum_probs=20.7

Q ss_pred             eeecCCCceEEEEEeeCCC---CCceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGD---PPLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~---p~~~~~W~~~  144 (291)
                      ..+++|+.++|.|.+....   ....+.|++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ   41 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQ   41 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEE
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccc
Confidence            4578899999999974221   2246889984

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00044  Score=38.34  Aligned_cols=57  Identities=23%  Similarity=0.441  Sum_probs=34.6

Q ss_pred             cCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEE
Q psy14540        119 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVA  183 (291)
Q Consensus       119 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  183 (291)
                      ..|..+.|.|....... ..--.|.|+|+.+......      .....+.+.  ..+++|.|.|..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~------~~~tey~V~--~~D~SGeY~CVF   67 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP------GQKTEFKVD--SDDQWGEYSCVF   67 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC------CSEEEEEEC--GGGCCEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC------CCceEEEEe--cCCCCceEEEEE
Confidence            46788999999854332 2357899999998754321      112223333  255666666664

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=6.7e-06  Score=50.13  Aligned_cols=32  Identities=22%  Similarity=0.371  Sum_probs=23.0

Q ss_pred             eeecCCCceEEEEEeeCC-CC-CceeEEeECCEe
Q psy14540        116 IKVHSGDRAGVQCLVTKG-DP-PLTISWLKNGLP  147 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~-~p-~~~~~W~~~~~~  147 (291)
                      ..+..++.++|.|.+.+. +| ...|+|++++..
T Consensus        13 ~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~   46 (101)
T d1ow0a1          13 EDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGK   46 (101)
T ss_dssp             HHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSC
T ss_pred             HHHccCCCeEEEEEEeCCCCCcceEEEEEECCce
Confidence            345568899999999443 35 358999987743

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.0012  Score=41.11  Aligned_cols=24  Identities=13%  Similarity=0.275  Sum_probs=17.7

Q ss_pred             ceEEEEeeeecCCCeeEEEEeeeC
Q psy14540        202 TSSLSIATLSTGHSGNYTCVASNT  225 (291)
Q Consensus       202 ~~~l~i~~~~~~~~g~y~C~~~~~  225 (291)
                      ...|.|.++..+|+|.|.|.+...
T Consensus        76 ~~~L~I~~l~~~DsavYyCa~~~~   99 (118)
T d1yjdc1          76 SVTFYLQNLYVNQTDIYFCKIEVM   99 (118)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEEE
T ss_pred             eEEEEECCCCcccCeEEEEEEecc
Confidence            456888888888888888876543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.36  E-value=0.00081  Score=41.03  Aligned_cols=27  Identities=19%  Similarity=0.468  Sum_probs=21.2

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLK  143 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  143 (291)
                      ..+++|+.+.|.|.+. |..  ...+.|++
T Consensus        10 ~lvkPg~sl~LsC~~S-G~~~~~~~~~WvR   38 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVS-GTSFDDYYWTWVR   38 (116)
T ss_dssp             SEECTTSCEEEEEEEE-SSCSTTSEEEEEE
T ss_pred             ceECCCCCEEEEEEEe-eecCCCCcceece
Confidence            5678999999999984 433  45788987

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.31  E-value=0.00073  Score=39.20  Aligned_cols=62  Identities=15%  Similarity=0.173  Sum_probs=38.4

Q ss_pred             CcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540         18 PPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV   85 (291)
Q Consensus        18 ~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~   85 (291)
                      +.++|.|.+.+ .| ...|.|.++|..+.......    ...++.++.+.+...  .....|+|.+.+..
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~----~~~~gtys~~s~~~~--~~~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIV----ISPSGKYNAVKLGKY--EDSNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEE----ECTTSSEEEEEEEEE--TTTTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEee----eccCCcEEEEEEEec--CCCCEEEEEEEECC
Confidence            56789999998 33 56699999998765332211    122333343444443  34447999998754

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.0003  Score=42.58  Aligned_cols=29  Identities=31%  Similarity=0.598  Sum_probs=20.9

Q ss_pred             CCCceEEEEEeeCCCCC--ceeEEeECCEec
Q psy14540        120 SGDRAGVQCLVTKGDPP--LTISWLKNGLPI  148 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~  148 (291)
                      .++.++|.|.+.+.+|.  ..+.|.+++..+
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~   48 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI   48 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcC
Confidence            46789999999655664  367787777544

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.24  E-value=0.00091  Score=41.07  Aligned_cols=28  Identities=18%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ..+++|+.+.|.|.+. |..  .-.+.|++.
T Consensus        10 ~~vkPG~sl~LsC~~S-G~~~~~y~~~W~RQ   39 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVY-GGSFSDYYWSWIRQ   39 (120)
T ss_dssp             CEECTTSCEEEEEEEE-SSCCSSCCEEEEEE
T ss_pred             cEECCCCCEEEEEEEc-cccCccCcceeeeE
Confidence            4678999999999984 543  346889983

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.20  E-value=6e-05  Score=46.59  Aligned_cols=27  Identities=19%  Similarity=0.482  Sum_probs=21.2

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCE
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGL  146 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~  146 (291)
                      .++.++|.|.+.+.+| ...|.|.+++.
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~   53 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEP   53 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCC
Confidence            3567899999977777 46899988763

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00093  Score=39.43  Aligned_cols=68  Identities=22%  Similarity=0.312  Sum_probs=44.3

Q ss_pred             CcceeecCCCceEEEEEeeCCCCCceeEEeE-CCEecc-CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPIL-SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT  186 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  186 (291)
                      +..+.+.+|+.+.+.|.+.  .|...++.++ ++..+. ..........    ..+.|.++...+.|.|.|.+...
T Consensus        12 p~~V~v~eg~~~vIPC~vT--~P~~~VtL~~~~~~~~~p~g~~v~~Dpk----~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT--SPNITVTLKKFPLDTLIPDGKRIIWDSR----KGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS--CTTSCCEEEETTTEEECCCSSSEEEETT----TEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEeCCCCEEEEccCC--CCCceeEEEeccCCccCCCCCEEEECCC----CCEEEeCCCcccCeEEEEEEEEC
Confidence            4557889999999999983  5666665544 555443 3333333322    23777777777888888877654

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=6.1e-06  Score=51.72  Aligned_cols=83  Identities=12%  Similarity=0.192  Sum_probs=47.1

Q ss_pred             Ccce-eeccee-eeecCCcEEEEEEecC-CCC---CeeEEEECCeecCCCeeEe-ceEEeeccceEEEEEEeecCCCCCe
Q psy14540          3 PQLI-YKFIQQ-TLQPGPPVSLKCIATG-NPT---PHISWKLDGYPLAGDRFVM-GQYMSLHGDVISHVNISSVRVEDSG   75 (291)
Q Consensus         3 p~~~-~~~~~~-~v~~g~~v~l~C~~~~-~~~---~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G   75 (291)
                      |.+. +.|... .+..+..++|.|.+.+ .|.   ..+.|++++..+....... ...........+.|.|..-.+....
T Consensus        13 p~V~i~pPs~~e~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~   92 (116)
T d1igyb3          13 SSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGK   92 (116)
T ss_dssp             CCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTC
T ss_pred             CEEEEECcChHHhcccCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEcccEECCCCCEEEEEEEEECHHHhCCCC
Confidence            4443 344332 3677999999999987 342   4577888876654211111 0000011123355766655554556


Q ss_pred             EEEEEEeCCC
Q psy14540         76 IYQCTATNRV   85 (291)
Q Consensus        76 ~y~C~~~~~~   85 (291)
                      .|+|.|.+..
T Consensus        93 ~ytC~V~H~~  102 (116)
T d1igyb3          93 EFKCRVNSAA  102 (116)
T ss_dssp             CCBCCBCCSS
T ss_pred             EEEEEEEeCC
Confidence            8999998754

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.17  E-value=0.00086  Score=40.94  Aligned_cols=28  Identities=29%  Similarity=0.525  Sum_probs=21.5

Q ss_pred             eeecCCCceEEEEEeeCCC--CCceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGD--PPLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~  144 (291)
                      ..+++|+.++|.|.+. |.  ....+.|++.
T Consensus        10 ~~~kPG~sl~LsC~~S-G~s~~~y~~~W~RQ   39 (115)
T d1f3dh1          10 ELVKPGASVKVSCKAS-GYSFIDYNIHWVKQ   39 (115)
T ss_dssp             EEECTTCCEEEEEEEE-SSCGGGSCEEEEEE
T ss_pred             cEECCCCCEEEEEEEc-cccCCCCCcceeEE
Confidence            5688999999999984 43  3456899873

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.16  E-value=0.0013  Score=40.49  Aligned_cols=29  Identities=21%  Similarity=0.436  Sum_probs=21.2

Q ss_pred             eeecCCCceEEEEEeeCCC-CCceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGD-PPLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~  144 (291)
                      ..+++|++++|.|.+.... ....+.|++.
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ   39 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQ   39 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEE
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeee
Confidence            4678999999999984322 2346899984

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.15  E-value=0.0022  Score=39.27  Aligned_cols=28  Identities=21%  Similarity=0.573  Sum_probs=21.7

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ..+++|+.+.|.|.+. |..  ...+.|+|.
T Consensus         9 ~~vkPg~sl~LsC~~S-G~~~s~y~~~W~RQ   38 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAAS-GNTLCTYDMSWYRR   38 (119)
T ss_dssp             EEECTTCCEEEEEEEE-SCTTCCEEEEEEEE
T ss_pred             ceECCCCCeEEEEEEc-CCCccCCceeeeee
Confidence            5688999999999984 433  456889884

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00036  Score=39.57  Aligned_cols=61  Identities=26%  Similarity=0.469  Sum_probs=38.9

Q ss_pred             ecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCC-CCCeEEEEEEe
Q psy14540         15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV-EDSGIYQCTAT   82 (291)
Q Consensus        15 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C~~~   82 (291)
                      ..|.+|+|+|.-  .+...|.|.+++..+.........     +...-.|.+.+... +++|.|.|.+.
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~-----~~~~~~l~L~dfSe~e~sGyY~C~~~   69 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNI-----GSDEDHLSLKEFSELEQSGYYVCYPR   69 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTE-----EEETTEEEETTCCHHHHCEEEEEEET
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCccccc-----ccccceEEecccCccccCceEEEEcC
Confidence            469999999964  344579999999877622110000     00112256666655 68999999985

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.13  E-value=0.0023  Score=39.05  Aligned_cols=28  Identities=21%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeE
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLK  143 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  143 (291)
                      ...+++|+.+.|.|.+ .|..  .-.+.|+|
T Consensus         9 ~~~vkpg~sl~LsC~~-SG~~~s~y~~~WvR   38 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAA-SGFDFSKYWMSWVR   38 (118)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEE-CCccccCCceeeee
Confidence            3578899999999999 4543  33678887

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.13  E-value=0.0016  Score=39.69  Aligned_cols=29  Identities=17%  Similarity=0.454  Sum_probs=22.5

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ...+++|+.+.|.|.+ .|..  .-.+.|+|.
T Consensus         8 ~~~~kPG~sl~LsC~~-SG~~~~~y~~~WvRQ   38 (117)
T d1um5h1           8 PVLVKPGGSVKMSCKA-SEYTLTSYLFQWVKQ   38 (117)
T ss_dssp             CEEECTTCCEEEEEEE-SSCCCSCCEEEEEEE
T ss_pred             CceECCCCCEEEEEEE-ccccCCCCcCcccee
Confidence            4678899999999998 4543  457899873

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00012  Score=44.48  Aligned_cols=28  Identities=43%  Similarity=0.768  Sum_probs=21.5

Q ss_pred             CCCceEEEEEeeCCCC-CceeEEeECCEe
Q psy14540        120 SGDRAGVQCLVTKGDP-PLTISWLKNGLP  147 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~  147 (291)
                      .+..++|.|.+.+.+| ...|+|.+++..
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~   47 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALT   47 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCC
Confidence            3677999999977777 458999877643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.10  E-value=0.0014  Score=39.77  Aligned_cols=28  Identities=25%  Similarity=0.515  Sum_probs=21.5

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ..+++|+.+.|.|.+. |..  ...+.|++.
T Consensus        10 ~~vkpG~sl~LsC~~S-G~~~s~~~~~WvRQ   39 (114)
T d1indh1          10 DSVKPGGSLKLSCAAS-GFTLSGETMSWVRQ   39 (114)
T ss_dssp             CEECTTCCEEEEEEEE-SSCGGGSCEEEEEE
T ss_pred             ceECCCCCEEEEEEEC-ccCccCCceecccc
Confidence            5688999999999984 543  446889883

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=1.5e-05  Score=48.55  Aligned_cols=83  Identities=18%  Similarity=0.150  Sum_probs=45.6

Q ss_pred             Ccceee-cceeeeecCCcEEEEEEecCC--C-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540          3 PQLIYK-FIQQTLQPGPPVSLKCIATGN--P-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ   78 (291)
Q Consensus         3 p~~~~~-~~~~~v~~g~~v~l~C~~~~~--~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~   78 (291)
                      |.+.+. |....+..++.++|.|.+.+.  | ...|+|++++.......... ..........+.|.|..-.+.....|+
T Consensus         3 P~V~l~~Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~~-~~~~gt~s~~S~L~v~~~~W~~g~~ft   81 (101)
T d1ow0a1           3 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPE-RDLCGCYSVSSVLPGCAEPWNHGKTFT   81 (101)
T ss_dssp             CCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCCC-CCSTTCCCEEEECTTTHHHHHHTCEEE
T ss_pred             CEEEEECCCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecceE-ECCCCCEEEEEEEEEcHHHcCCCCeEE
Confidence            555444 444457778999999999874  3 35799998775432100000 000001112344444443333345999


Q ss_pred             EEEeCCCC
Q psy14540         79 CTATNRVG   86 (291)
Q Consensus        79 C~~~~~~~   86 (291)
                      |.|.+...
T Consensus        82 C~V~H~~~   89 (101)
T d1ow0a1          82 CTAAYPES   89 (101)
T ss_dssp             EEECCSSC
T ss_pred             EEEEeCCC
Confidence            99987543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.08  E-value=0.0017  Score=39.58  Aligned_cols=27  Identities=26%  Similarity=0.581  Sum_probs=20.9

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLK  143 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  143 (291)
                      ..+++|+.+.|+|.+. |+.  .-.+.|++
T Consensus        10 ~~~kPg~sv~LsC~~S-G~s~~~y~~~W~R   38 (117)
T d1iqdb1          10 EVKKPGASVKVSCKVS-GYTLTELPVHWVR   38 (117)
T ss_dssp             EEECTTCCEEEEEEEE-SSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEEc-CCCCCCCCEEEEE
Confidence            5678999999999984 543  34678887

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.07  E-value=0.0025  Score=39.19  Aligned_cols=28  Identities=21%  Similarity=0.501  Sum_probs=21.4

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ..+++|+.++|.|.+. |..  ...+.|++.
T Consensus        10 ~~vkpG~sl~LsC~~S-G~s~~~~~~~W~RQ   39 (120)
T d1pg7x1          10 ELVKPGASVKISCKAS-GYSFTGHLLNWVKQ   39 (120)
T ss_dssp             EEECTTCCEEEEEEEE-SSCGGGSEEEEEEE
T ss_pred             cEECCCCCEEEEEEEc-cccCCCCCcceeee
Confidence            5678999999999984 433  346889873

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.05  E-value=0.0039  Score=38.43  Aligned_cols=27  Identities=15%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             eeecCCCceEEEEEeeCCCC----CceeEEeE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP----PLTISWLK  143 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p----~~~~~W~~  143 (291)
                      ..+++|+.++|.|.+. |..    ...+.|++
T Consensus        10 ~~vkpg~sv~LsC~~S-G~s~s~~~y~~~W~R   40 (123)
T d1r0ah1          10 GIVQPSQPFRLTCTFS-GFSLSTSGIGVTWIR   40 (123)
T ss_dssp             SEECTTCCEEEEEEEE-SSCTTSTTEEEEEEE
T ss_pred             ceECCCCCeEEEEEEc-CCccCCCCCeeeccc
Confidence            5678999999999984 422    23578987

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00075  Score=38.74  Aligned_cols=50  Identities=26%  Similarity=0.529  Sum_probs=33.4

Q ss_pred             CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCC-CCCceeEEEE
Q psy14540        120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNYTCV  182 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~  182 (291)
                      .|..|+|+|... +  ...+.|.+++..++...          ...|.+.... .+++|.|.|.
T Consensus        13 SGTtV~LTCP~~-~--~~~I~Wkkn~~~i~g~~----------~~~L~L~~FSE~e~SGyY~C~   63 (100)
T d1jbja2          13 SGTSVELTCPLD-S--DENLKWEKNGQELPQKH----------DKHLVLQDFSEVEDSGYYVCY   63 (100)
T ss_dssp             ETTEEEEECSSC-C--CTTCEEEETTEEECSCC----------CSEEEEESCCTTTSCEEEEEE
T ss_pred             eCCEEEEECCCC-C--CCceEEeeccccCCCCC----------CcEEEEccccccccCcceEEe
Confidence            699999999863 2  24799999998876432          1235555543 3566666664

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.05  E-value=0.00086  Score=41.25  Aligned_cols=28  Identities=14%  Similarity=0.506  Sum_probs=20.9

Q ss_pred             eeecCCCceEEEEEeeCCCC----CceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP----PLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p----~~~~~W~~~  144 (291)
                      ..+++|+.++|.|.+. |..    ...+.|+|.
T Consensus        10 ~~vkPg~sl~LsC~~S-G~s~~~s~y~~~W~RQ   41 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVS-GFSITRTNYCWHWIRQ   41 (120)
T ss_dssp             SEECSSSCEEEEEEEE-SSCTTSTTEEEEEEEE
T ss_pred             ceECCCCCEEEEEEEc-ccccccCccccCcccC
Confidence            5678999999999984 432    235789873

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.04  E-value=0.0031  Score=38.83  Aligned_cols=29  Identities=21%  Similarity=0.448  Sum_probs=22.0

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ...+++|+.++|.|.+. |..  ...+.|++.
T Consensus         9 ~~~~kpG~sv~LsC~~S-G~~~s~~~~~W~RQ   39 (121)
T d1j05b_           9 AELVEPGASVKLSCTAS-GFNIKDTYMHWVKQ   39 (121)
T ss_dssp             CEEECTTCCEEEEEEEE-SSCGGGSEEEEEEE
T ss_pred             CceECCCCCEEEEEEEe-cCCCCCCCcceeeE
Confidence            35688999999999984 433  446889883

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.04  E-value=0.0014  Score=39.88  Aligned_cols=28  Identities=25%  Similarity=0.532  Sum_probs=21.6

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ..+++|+.++|+|.+ .|..  ...+.|++.
T Consensus        10 ~lvkPg~sl~LsC~~-SG~~~~~~~~~W~RQ   39 (117)
T d1c5db1          10 GLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQ   39 (117)
T ss_dssp             SEECTTSCEEEEEEE-CSSCTTTCCEEEEEE
T ss_pred             ceECCCCCeEEEEEE-cCCCccCCceEcccC
Confidence            567899999999999 4543  346889873

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.0014  Score=39.99  Aligned_cols=29  Identities=17%  Similarity=0.494  Sum_probs=21.8

Q ss_pred             cceeecCCCceEEEEEeeCCCC--CceeEEeE
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLK  143 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  143 (291)
                      ....+++|+++.|.|.+. |..  ...+.|++
T Consensus         8 g~~~~kPG~sl~LsC~~S-G~s~s~~~~~WvR   38 (117)
T d1mfah1           8 GTVVARPGASVKMSCKAS-GYTFTNYWMHWIK   38 (117)
T ss_dssp             CCEEECTTCCEEEEEEEE-SSCGGGSEEEEEE
T ss_pred             CCceECCCCCEEEEEEEc-ccCCCCCceEeee
Confidence            346778999999999984 533  44688887

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.002  Score=39.07  Aligned_cols=30  Identities=23%  Similarity=0.450  Sum_probs=22.6

Q ss_pred             CcceeecCCCceEEEEEeeCCCC--CceeEEeE
Q psy14540        113 SRSIKVHSGDRAGVQCLVTKGDP--PLTISWLK  143 (291)
Q Consensus       113 ~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  143 (291)
                      +....+++|+++.|+|.+ .|..  ...+.|+|
T Consensus         7 sg~~~~kPg~sl~LsC~~-SG~s~~~~~~~WvR   38 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKA-SGYTFTNYWINWVK   38 (116)
T ss_dssp             CSEEEECTTCCEEEEEEE-ESSCGGGSCEEEEE
T ss_pred             ECCcEECCCCCEEEEEEE-ccCccccCceEeee
Confidence            344678899999999999 4543  34678887

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.00  E-value=0.0018  Score=39.42  Aligned_cols=27  Identities=15%  Similarity=0.528  Sum_probs=21.1

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLK  143 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  143 (291)
                      ..+++|+.+.|.|.+. |..  ...+.|+|
T Consensus        10 ~~~kPG~sl~LsC~~S-G~s~~~y~~~WvR   38 (118)
T d1nlbh1          10 ELKKPGETVKISCKAS-GYTFTDFSMHWVN   38 (118)
T ss_dssp             EEECTTCCEEEEEEEE-SSCGGGSCEEEEE
T ss_pred             ceECCCCCEEEEEEEc-CCCCCCCceeccc
Confidence            5678999999999994 533  34688987

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.99  E-value=0.0026  Score=39.87  Aligned_cols=28  Identities=14%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             eeecCCCceEEEEEeeCCCC----CceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP----PLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p----~~~~~W~~~  144 (291)
                      ..+++|+.++|.|.+. |..    ...+.|++.
T Consensus        10 ~~vkpg~Sl~LsC~~S-G~~~s~~~~~~~WyRQ   41 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFS-GFSLSDFGVGVGWIRQ   41 (132)
T ss_dssp             SEECTTCCEEEEEEEE-SSCTTSTTCEEEEEEE
T ss_pred             eeECCCCCeEEEEEEe-CCCcCCCCCceEEEEE
Confidence            5688999999999984 432    235889973

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.97  E-value=0.0041  Score=38.03  Aligned_cols=29  Identities=14%  Similarity=0.430  Sum_probs=22.0

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ...+++|+++.|.|.+ .|..  ...+.|++.
T Consensus         9 ~~~~kpg~sl~LsC~~-SG~~~~~~~~~WvRQ   39 (119)
T d1rz7h1           9 AEVKKPGATVKISCKA-SGYTFSDFYMYWVRQ   39 (119)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEE
T ss_pred             CceECCCCCEEEEEEE-cCCCCcCCceEcccc
Confidence            3567899999999998 4543  346899873

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.96  E-value=0.0016  Score=39.75  Aligned_cols=28  Identities=21%  Similarity=0.455  Sum_probs=21.6

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeE
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLK  143 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  143 (291)
                      ...+++|+.+.|.|.+ .|..  .-.+.|++
T Consensus         9 ~~~~kpg~sl~lsC~~-SG~~~~~y~~~WvR   38 (118)
T d2jelh1           9 PELVRPGVSVKISCKG-SGYTFTTYAMHWVK   38 (118)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEE
T ss_pred             CceECCCCCEEEEEEE-cCCCCCCCceecce
Confidence            3568899999999998 4544  34688987

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.95  E-value=0.0021  Score=39.10  Aligned_cols=28  Identities=18%  Similarity=0.455  Sum_probs=21.4

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ..+++|+.+.|.|.+. |..  ...+.|++.
T Consensus        10 ~~vkPg~sl~LsC~~S-G~s~~~y~~~WvRQ   39 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVS-GFSLTGYGVNWVRQ   39 (116)
T ss_dssp             SEECTTSCEEEEEEEE-SSCTTSSEEEEEEE
T ss_pred             ceECCCCCeEEEEEEc-ccccCCCCCccceE
Confidence            5678999999999994 433  446889873

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.95  E-value=0.0015  Score=39.70  Aligned_cols=29  Identities=17%  Similarity=0.416  Sum_probs=22.3

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ...+++|+++.|.|.+ .|..  .-.+.|++.
T Consensus         9 ~~~vkpg~sl~LsC~~-SG~~~~~y~~~WvRQ   39 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAA-SGFNIKEYYMHWVRQ   39 (117)
T ss_dssp             CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEE
T ss_pred             CceECCCCCEEEEEEE-cCCCCcCCceEccee
Confidence            3678899999999999 4543  447889873

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.94  E-value=0.0011  Score=39.83  Aligned_cols=27  Identities=19%  Similarity=0.549  Sum_probs=19.4

Q ss_pred             eecCCCceEEEEEeeCCC--CCceeEEeEC
Q psy14540        117 KVHSGDRAGVQCLVTKGD--PPLTISWLKN  144 (291)
Q Consensus       117 ~~~~g~~~~l~C~~~~~~--p~~~~~W~~~  144 (291)
                      .+++|+.+.|.|.+ .|.  ....+.|++.
T Consensus         4 lvkPG~sl~LsC~~-SG~~~~~~~~~WvRQ   32 (107)
T d1sjva_           4 LVQAGESLKLSCAA-SGNTFSGGFMGWYRQ   32 (107)
T ss_dssp             CCCTTCCEEEEECC-CC-----CCEEEEEE
T ss_pred             EecCCCCcEEEEEE-CCCCccCCcEEEEEe
Confidence            46789999999998 453  2446889884

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.90  E-value=0.0045  Score=37.96  Aligned_cols=29  Identities=17%  Similarity=0.439  Sum_probs=22.4

Q ss_pred             cceeecCCCceEEEEEeeCCCC--CceeEEeE
Q psy14540        114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLK  143 (291)
Q Consensus       114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  143 (291)
                      ....+++|+.+.|.|.+ .|..  .-.+.|++
T Consensus         9 g~~~vkpg~sl~LsC~~-SG~~~~~y~~~WvR   39 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKA-SGYSFTSYGLHWVR   39 (122)
T ss_dssp             CCEEECTTCCEEEEEEE-CSSCGGGSEEEEEE
T ss_pred             CCcEECCCCCEEEEEEE-cCCCccCCCceeeE
Confidence            34678999999999999 5654  34688987

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.90  E-value=0.0027  Score=39.51  Aligned_cols=28  Identities=29%  Similarity=0.667  Sum_probs=21.5

Q ss_pred             eeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      ..+++|+++.|.|.+. |..  .-.+.|++.
T Consensus        10 ~lvkpg~sl~LsC~~S-G~~~s~y~~~W~RQ   39 (127)
T d1i3ua_          10 GLVQAGDSLKLSCEAS-GDSIGTYVIGWFRQ   39 (127)
T ss_dssp             EECCTTCCEEEEEEEE-SSCGGGSEEEEEEE
T ss_pred             ceECCCCCeEEEEEEc-CCCCCCCceEeeee
Confidence            5678999999999984 543  446889984

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.89  E-value=0.0041  Score=37.84  Aligned_cols=28  Identities=14%  Similarity=0.448  Sum_probs=21.4

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeE
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLK  143 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  143 (291)
                      ...+++|+++.|.|.+. |..  .-.+.|++
T Consensus         9 ~~~~kpg~sl~lsC~~S-G~~~~~y~~~WvR   38 (117)
T d1jnhb1           9 AELARPGASVKLSCRTS-GYSFTTYWMQWVR   38 (117)
T ss_dssp             CEECCTTCCEEEEEEEE-SSCSSSSEEEEEE
T ss_pred             CceECCCCCEEEEEEEc-CCCCCCCceeeee
Confidence            35678999999999994 533  45688987

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.89  E-value=0.0019  Score=38.80  Aligned_cols=28  Identities=14%  Similarity=0.362  Sum_probs=21.6

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeE
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLK  143 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  143 (291)
                      ...+++|+++.|+|.+. |..  ...+.|++
T Consensus         9 ~~~vkPG~Sl~LsC~~S-G~t~~~~~~~WvR   38 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAAS-GFTFNTDAMNWVR   38 (109)
T ss_dssp             CEEECTTCCEEEEEEEE-SSCGGGSCEEEEE
T ss_pred             CCeECCCCCeEEEEEEC-CCcccccccccce
Confidence            36788999999999984 433  34688887

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.88  E-value=0.0051  Score=38.22  Aligned_cols=27  Identities=11%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             eeecCCCceEEEEEeeCCCC----CceeEEeE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDP----PLTISWLK  143 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p----~~~~~W~~  143 (291)
                      ..+++|+.++|.|.+. |..    ...+.|++
T Consensus        10 ~lvkPg~sv~LsC~~S-G~s~s~~~~~~~W~R   40 (126)
T d1etzb1          10 GILQPSQTLSLTCSFS-GFSLSTSGMGVGWIR   40 (126)
T ss_dssp             SEECTTCCEEEEEEEE-SSCTTSTTEEEEEEE
T ss_pred             ceECCCCCEEEEEEEe-CCccCCCCCCCeEEe
Confidence            4678899999999984 422    23567886

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.88  E-value=0.0078  Score=35.83  Aligned_cols=24  Identities=21%  Similarity=0.558  Sum_probs=18.1

Q ss_pred             CCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540        120 SGDRAGVQCLVTKGDP--PLTISWLKN  144 (291)
Q Consensus       120 ~g~~~~l~C~~~~~~p--~~~~~W~~~  144 (291)
                      +|++++|.|.+ .|..  .-.+.|+|.
T Consensus         1 PG~sl~LsC~~-SG~s~~~y~~~WvRQ   26 (103)
T d1oari_           1 PGASVKLSCKA-SGYTFTSYWMHWVKQ   26 (103)
T ss_dssp             CCCCEEEEEEC-CSSCSTTSEEEEEEE
T ss_pred             CCCCeEEEEEE-ECCChhcCceeeEEe
Confidence            58999999999 4543  346889873

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.87  E-value=0.018  Score=35.38  Aligned_cols=28  Identities=21%  Similarity=0.506  Sum_probs=21.2

Q ss_pred             ceeecCCCceEEEEEeeCCCC--CceeEEeE
Q psy14540        115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLK  143 (291)
Q Consensus       115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~  143 (291)
                      ...+++|+.+.|.|.+. |..  ...+.|++
T Consensus         9 ~~~~kpg~sl~LsC~~S-G~~~~~~~~~W~R   38 (124)
T d2b1hh1           9 AEVKKSGESLKISCQTS-GYSFSDYWIGWVR   38 (124)
T ss_dssp             CEEEETTCCEEEEEEEE-SSCGGGSCEEEEE
T ss_pred             CceECCCCCEEEEEEEc-CCCCcCCcCccce
Confidence            35678999999999994 544  23578887

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.86  E-value=0.0016  Score=39.89  Aligned_cols=27  Identities=19%  Similarity=0.453  Sum_probs=20.6

Q ss_pred             eeecCCCceEEEEEeeCCCCC---ceeEEeE
Q psy14540        116 IKVHSGDRAGVQCLVTKGDPP---LTISWLK  143 (291)
Q Consensus       116 ~~~~~g~~~~l~C~~~~~~p~---~~~~W~~  143 (291)
                      ..+++|+.+.|+|.+ .|..-   -.+.|+|
T Consensus        10 ~~vkPg~sl~LsC~~-SG~s~~s~y~~~WvR   39 (119)
T d1ncwh1          10 GLVKPSQSLSLTCTV-TGYSITSDFAWNWIR   39 (119)
T ss_dssp             SEECTTSCEEEEEEE-ESSCTTSSEEEEEEE
T ss_pred             cEECCCCCEEEEEEE-ccccccCCCccccce
Confidence            568899999999999 45432   3578887