Psyllid ID: psy14621

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MVAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS
Secondary Structure (PSIPRED)
cEEEccccccHHHHccccccccccHHHHccccccEEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccEEEEEEcccccccccEEEEEEEcccccEEEEccccccccccccHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccEEEEEEEEccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEccccccHHHHHHHHHHcccccEEEEEEccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mvagasggigqplslllkqsplvdhlslydinNAKVMVAgasggigqplslllkqsplvdhlslydivhtpgvaadlshIESKAHVqafngadqlkglnptdvnvpvigghagitiiplisqatpsvsfpddQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIqglkgesnvIECAYvksdvteasyfstpvhlgkngieknlglgklsDFEKELVKAAVPELKKNIAKGEEFVAKS
Flexible Loop (DISEMBL)
mvagasggigqpLSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASyfstpvhlgkngiEKNLGLGKLSDFEKELVKAAVPELkkniakgeefvaks
Low Complexity Region (SEG)
MVAGASGGIGqplslllkqsplVDHLSLYDINNAKVMVAGASGGIGqplslllkqsplVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS
Disordered region (IsUnstruct)
************LSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAV*****************
Disordered Region (DISOPRED)
MVAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA**
Disordered Region (DISEMBL)
********IGQPLSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS
Disordered Region (DISPRO)
MVAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q5NVR2	338	Malate dehydrogenase, mit	yes	N/A	0.625	0.458	0.693	4e-60
P40926	338	Malate dehydrogenase, mit	yes	N/A	0.625	0.458	0.693	5e-60
Q4R568	338	Malate dehydrogenase, mit	N/A	N/A	0.625	0.458	0.681	4e-59
P04636	338	Malate dehydrogenase, mit	yes	N/A	0.625	0.458	0.675	1e-58
P08249	338	Malate dehydrogenase, mit	yes	N/A	0.645	0.473	0.668	2e-58
P00346	338	Malate dehydrogenase, mit	yes	N/A	0.612	0.449	0.703	2e-58
Q32LG3	338	Malate dehydrogenase, mit	yes	N/A	0.612	0.449	0.703	3e-58
O02640	341	Probable malate dehydroge	yes	N/A	0.629	0.457	0.631	1e-48
B2VGW7	311	Malate dehydrogenase OS=E	yes	N/A	0.979	0.781	0.410	9e-46
A4WF48	312	Malate dehydrogenase OS=E	yes	N/A	0.987	0.785	0.394	4e-45

>sp|Q5NVR2|MDHM_PONAB Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1

 Score =  231 bits (588), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/160 (69%), Positives = 131/160 (81%)

Query: 86  VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
           V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEAG
Sbjct: 175 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAG 234

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
           TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  TE +YFSTP+ L
Sbjct: 235 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLL 294

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           GK GIEKNLG+GK+S FE++++  A+PELK +I KGE+FV
Sbjct: 295 GKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFV 334

Pongo abelii (taxid: 9601)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P40926|MDHM_HUMAN Malate dehydrogenase, mitochondrial OS=Homo sapiens GN=MDH2 PE=1 SV=3

 Score =  231 bits (588), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 111/160 (69%), Positives = 131/160 (81%)

Query: 86  VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
           V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEAG
Sbjct: 175 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAG 234

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
           TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  TE +YFSTP+ L
Sbjct: 235 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLL 294

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           GK GIEKNLG+GK+S FE++++  A+PELK +I KGE+FV
Sbjct: 295 GKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFV 334

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q4R568|MDHM_MACFA Malate dehydrogenase, mitochondrial OS=Macaca fascicularis GN=MDH2 PE=2 SV=1

 Score =  228 bits (580), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 130/160 (81%)

Query: 86  VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
           V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEAG
Sbjct: 175 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAG 234

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
           TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  TE +YFSTP+ L
Sbjct: 235 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLL 294

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           GK GIEKNLG+G++  FE++++  A+PELK +I KGE+FV
Sbjct: 295 GKKGIEKNLGIGQIPSFEEKMISDAIPELKASIKKGEDFV 334

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P04636|MDHM_RAT Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2

 Score =  226 bits (575), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/160 (67%), Positives = 130/160 (81%)

Query: 86  VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
           V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL  LTGRIQEAG
Sbjct: 175 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAG 234

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
           TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  VIEC++V+S  TE +YFSTP+ L
Sbjct: 235 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVIECSFVQSKETECTYFSTPLLL 294

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           GK G+EKNLG+GK++ FE++++  A+PELK +I KGE+FV
Sbjct: 295 GKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFV 334

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P08249|MDHM_MOUSE Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3

 Score =  225 bits (574), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/160 (66%), Positives = 130/160 (81%)

Query: 86  VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
           V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL  LTGRIQEAG
Sbjct: 175 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAG 234

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
           TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++V+S  TE +YFSTP+ L
Sbjct: 235 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLL 294

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           GK G+EKNLG+GK++ FE++++  A+PELK +I KGE+FV
Sbjct: 295 GKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFV 334

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P00346|MDHM_PIG Malate dehydrogenase, mitochondrial OS=Sus scrofa GN=MDH2 PE=1 SV=2

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 126/152 (82%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKGL+P  V+VPVIGGHAG TIIPLISQ TP V FP DQL  LTGRIQEAGTEVVKAKA
Sbjct: 183 ELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKA 242

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           GAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  T+  YFSTP+ LGK GIEKN
Sbjct: 243 GAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKN 302

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           LG+GK+S FE++++  A+PELK +I KGEEFV
Sbjct: 303 LGIGKISPFEEKMIAEAIPELKASIKKGEEFV 334

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q32LG3|MDHM_BOVIN Malate dehydrogenase, mitochondrial OS=Bos taurus GN=MDH2 PE=1 SV=1

 Score =  224 bits (572), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 125/152 (82%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LK L+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL  LTGRIQEAGTEVVKAKA
Sbjct: 183 ELKDLDPARVNVPVIGGHAGKTIIPLISQCTPKVEFPQDQLTTLTGRIQEAGTEVVKAKA 242

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           GAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  T+  YFSTP+ LGK GIEKN
Sbjct: 243 GAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKN 302

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           LG+GK+S FE++++  A+PELK +I KGEEFV
Sbjct: 303 LGIGKVSPFEEKMIAEAIPELKASIKKGEEFV 334

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O02640|MDHM_CAEEL Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=3 SV=1

 Score =  192 bits (489), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/160 (63%), Positives = 124/160 (77%), Gaps = 4/160 (2%)

Query: 87  QAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGT 146
           QAF    +LKG + +   VPV+GGHAGITIIPL+SQ  PS  F ++++  LT RIQ+AGT
Sbjct: 182 QAF--VSELKGHDASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGT 239

Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD-VTEASYFSTPVHL 205
           EVV AKAGAGSATLSMA AGARFA +L++G+KGE NV +CAYV SD V    YFSTPV L
Sbjct: 240 EVVNAKAGAGSATLSMALAGARFANALVRGIKGEKNV-QCAYVASDAVKGVEYFSTPVEL 298

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           G NG+EK LG+GK+S +E++L+ A+VPEL KNIAKG  FV
Sbjct: 299 GPNGVEKILGVGKVSAYEQKLIDASVPELNKNIAKGVAFV 338

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|B2VGW7|MDH_ERWT9 Malate dehydrogenase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=mdh PE=3 SV=1

 Score =  183 bits (465), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 126/307 (41%), Positives = 167/307 (54%), Gaps = 64/307 (20%)

Query: 2   VAGASGGIGQPLSLLLK-QSPLVDHLSLYDINN-------------AKVMVAGASGGIGQ 47
           V GA+GGIGQ L+LLLK Q P    LSLYDI                 V +AG SG    
Sbjct: 5   VLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTSVKIAGFSGEDAT 64

Query: 48  P---------LSLLLKQSPLVDHLSLYD-----------------------IVHTP---- 71
           P         +S  + + P +D   L++                       I+  P    
Sbjct: 65  PALKGADVVLISAGVARKPGMDRSDLFNVNAGIVRNLIEQVAATCPKALIGIITNPVNTT 124

Query: 72  -GVAAD------------LSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIP 118
             +AA+            L  I +   ++A     +LKG  P +VNVPVIGGH+G+TI+P
Sbjct: 125 VAIAAEVLKKAGVYDKNRLFGITTLDIIRANAFVAELKGKQPEEVNVPVIGGHSGVTILP 184

Query: 119 LISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLK 178
           L+SQ  P VSF + +  +LT RIQ AGTEVV+AKAG GSATLSM  A ARF  +L++ LK
Sbjct: 185 LLSQ-VPGVSFNEQETASLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLALVRALK 243

Query: 179 GESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238
           GESNVIECAYV+ +   A +FS P+ LGKNGI +   +G+LS FE+  + + +  LKK+I
Sbjct: 244 GESNVIECAYVEGEGEYARFFSQPLLLGKNGIVERRPVGELSAFEQHALSSMLDTLKKDI 303

Query: 239 AKGEEFV 245
            +GEEFV
Sbjct: 304 TQGEEFV 310

Catalyzes the reversible oxidation of malate to oxaloacetate.

Erwinia tasmaniensis (strain DSM 17950 / Et1/99) (taxid: 338565)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|A4WF48|MDH_ENT38 Malate dehydrogenase OS=Enterobacter sp. (strain 638) GN=mdh PE=3 SV=1

 Score =  181 bits (459), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 122/309 (39%), Positives = 171/309 (55%), Gaps = 64/309 (20%)

Query: 2   VAGASGGIGQPLSLLLK-QSPLVDHLSLY-----------DINN--AKVMVAGASGGIGQ 47
           V GA+GGIGQ L+LLLK Q P    LSLY           D+++    V + G SG   +
Sbjct: 5   VLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGENAR 64

Query: 48  P---------LSLLLKQSPLVDHLSLYD-----------------------IVHTP---- 71
           P         +S  + + P +D   L++                       I+  P    
Sbjct: 65  PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQIAETCPKACVGIITNPVNTT 124

Query: 72  -GVAAD------------LSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIP 118
             +AA+            L  + +   +++     +LKG +P+D+ VPVIGGH+G+TI+P
Sbjct: 125 VAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKSPSDIEVPVIGGHSGVTILP 184

Query: 119 LISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLK 178
           L+SQ  P VSF + ++  LT RIQ AGTEVV+AKAG GSATLSM  A ARF  SL++ L+
Sbjct: 185 LLSQ-IPGVSFSEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQ 243

Query: 179 GESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238
           GE  V+ECAYV+ D   A +FS P+ LGKNGIE+   +GKLS FE++ ++  +  LKK+I
Sbjct: 244 GEKGVVECAYVEGDGEHARFFSQPLLLGKNGIEERQSIGKLSAFEQQAMEGMLDTLKKDI 303

Query: 239 AKGEEFVAK 247
             GEEFV+K
Sbjct: 304 TLGEEFVSK 312

Catalyzes the reversible oxidation of malate to oxaloacetate.

Enterobacter sp. (strain 638) (taxid: 399742)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
345308595	255	PREDICTED: malate dehydrogenase, mitocho	0.862	0.839	0.613	3e-78
344245731	271	Malate dehydrogenase, mitochondrial [Cri	0.862	0.789	0.573	2e-77
91085015	336	PREDICTED: similar to malate dehydrogena	0.653	0.482	0.783	3e-67
156553655	341	PREDICTED: malate dehydrogenase, mitocho	0.745	0.542	0.687	3e-66
332865953	296	PREDICTED: malate dehydrogenase, mitocho	0.935	0.783	0.498	7e-66
194373719	296	unnamed protein product [Homo sapiens]	0.935	0.783	0.494	1e-65
426356630	296	PREDICTED: malate dehydrogenase, mitocho	0.862	0.722	0.522	1e-65
395842984	310	PREDICTED: malate dehydrogenase, mitocho	0.971	0.777	0.508	1e-65
321457956	340	mitochondrial malate dehydrogenase [Daph	0.657	0.479	0.760	7e-65
332375761	335	unknown [Dendroctonus ponderosae]	0.612	0.453	0.815	1e-64

>gi|345308595|ref|XP_003428716.1| PREDICTED: malate dehydrogenase, mitochondrial-like, partial [Ornithorhynchus anatinus]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 154/251 (61%), Positives = 180/251 (71%), Gaps = 37/251 (14%)

Query: 32  NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAH------ 85
           N+AKV V GA+GGIGQPLSLLLK SPLV  L+LYDI HTPGVAADLSHIE++A+      
Sbjct: 1   NHAKVAVLGAAGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANAKGKWP 60

Query: 86  -------------------------------VQAFNGADQLKGLNPTDVNVPVIGGHAGI 114
                                          V+A     +LKGL+P  VNVPVIGGHAG 
Sbjct: 61  VNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGK 120

Query: 115 TIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLI 174
           TIIPLISQ TP V FP DQL ALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARF FS++
Sbjct: 121 TIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSVV 180

Query: 175 QGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPEL 234
             + G+  V+EC++V+S+ TE SYFSTP+ LGK GIEKNLG+GKLS FE+++V  A+PEL
Sbjct: 181 DAMNGKEGVVECSFVRSEETECSYFSTPLLLGKKGIEKNLGMGKLSPFEEKMVAEAIPEL 240

Query: 235 KKNIAKGEEFV 245
           K +I KGE+FV
Sbjct: 241 KASIRKGEDFV 251

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344245731|gb|EGW01835.1| Malate dehydrogenase, mitochondrial [Cricetulus griseus]

 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 182/267 (68%), Gaps = 53/267 (19%)

Query: 32  NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNG 91
           NNAKV V GASGGIGQPLSLLLK SPLV  L+LYDI HTPGVAADLSHIE++A+V+ + G
Sbjct: 1   NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLG 60

Query: 92  ADQ-----------------------------------------------------LKGL 98
            +Q                                                     LKGL
Sbjct: 61  PEQLPDCLKGCDVVVIPAGVPRKPAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGL 120

Query: 99  NPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSA 158
           +P+ VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEAGTEVVKAKAGAGSA
Sbjct: 121 DPSRVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSA 180

Query: 159 TLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGK 218
           TLSMAYAGARF FSL+  + G+  V+EC++V+S  TE +YFSTP+ LGK G+EKNLG+GK
Sbjct: 181 TLSMAYAGARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLLGKKGLEKNLGIGK 240

Query: 219 LSDFEKELVKAAVPELKKNIAKGEEFV 245
           ++ FE++++  A+PELK +I KGE+FV
Sbjct: 241 ITPFEEKMIAEAIPELKASIKKGEDFV 267

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|91085015|ref|XP_973533.1| PREDICTED: similar to malate dehydrogenase [Tribolium castaneum] gi|270008524|gb|EFA04972.1| hypothetical protein TcasGA2_TC015050 [Tribolium castaneum]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 127/162 (78%), Positives = 145/162 (89%)

Query: 86  VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
           V+A     +LKGLNP +V VPVIGGH+G+TIIPLISQATPSV+FP DQLKALT RIQEAG
Sbjct: 174 VRANTFVAELKGLNPLEVKVPVIGGHSGVTIIPLISQATPSVTFPPDQLKALTERIQEAG 233

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
           TEVVKAKAGAGSATLSMAYAGARFA SLI+ LKGE N+IECAYV+S++TEA YFSTP+ L
Sbjct: 234 TEVVKAKAGAGSATLSMAYAGARFAISLIRALKGEQNIIECAYVESNLTEAKYFSTPLLL 293

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
           GKNG+EKNLGLGKLSDFE++L+K A+PELKKNI KGE+FV K
Sbjct: 294 GKNGLEKNLGLGKLSDFEQDLLKKAIPELKKNIQKGEDFVNK 335

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156553655|ref|XP_001600547.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Nasonia vitripennis]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 153/192 (79%), Gaps = 7/192 (3%)

Query: 56  SPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGGHAGIT 115
           S ++    +YD     GV   L  + S A V       + KGL+P  VNVPVIGGH+GIT
Sbjct: 155 SEVMQKAGVYDPNRIFGVTT-LDIVRSNAFV------GEAKGLDPQKVNVPVIGGHSGIT 207

Query: 116 IIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQ 175
           IIPLISQATPSV+FP DQLKALT RIQEAGTEVVKAKAG GSATLSMAYAGARFAFSLI+
Sbjct: 208 IIPLISQATPSVAFPPDQLKALTERIQEAGTEVVKAKAGTGSATLSMAYAGARFAFSLIR 267

Query: 176 GLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELK 235
            L GESNV+EC+YV+S+VTEA YFSTP+ LGKNG+EKNLGLGKL++FE +L+ AA+PELK
Sbjct: 268 ALNGESNVVECSYVRSNVTEAKYFSTPILLGKNGVEKNLGLGKLNEFESKLLAAAIPELK 327

Query: 236 KNIAKGEEFVAK 247
           KNI KGE+FV K
Sbjct: 328 KNIQKGEDFVNK 339

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332865953|ref|XP_003318574.1| PREDICTED: malate dehydrogenase, mitochondrial [Pan troglodytes] gi|397475059|ref|XP_003808969.1| PREDICTED: malate dehydrogenase, mitochondrial isoform 2 [Pan paniscus]

 Score =  256 bits (654), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 146/293 (49%), Positives = 174/293 (59%), Gaps = 61/293 (20%)

Query: 9   IGQPLSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY--- 65
           + +P S  L++S      S    NNAKV V GASGGIGQPLSLLLK SPLV  L+LY   
Sbjct: 5   LARPASAALRRS-----FSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA 59

Query: 66  -------DIVHTPGVAADLSHIESKAHVQAFNGADQL----------------------- 95
                  D+ H    AA   ++  +       G D +                       
Sbjct: 60  HTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNAT 119

Query: 96  -----------------------KGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDD 132
                                   GL+P  VNVPVIGGHAG TIIPLISQ TP V FP D
Sbjct: 120 IVATLTAACAQHCPEAMICIIANPGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQD 179

Query: 133 QLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD 192
           QL ALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS 
Sbjct: 180 QLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQ 239

Query: 193 VTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
            TE +YFSTP+ LGK GIEKNLG+GK+S FE++++  A+PELK +I KGE+FV
Sbjct: 240 ETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFV 292

Source: Pan troglodytes

Species: Pan troglodytes

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|194373719|dbj|BAG56955.1| unnamed protein product [Homo sapiens]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/293 (49%), Positives = 174/293 (59%), Gaps = 61/293 (20%)

Query: 9   IGQPLSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY--- 65
           + +P S  L++S      S    NNAKV V GASGGIGQPLSLLLK SPLV  L+LY   
Sbjct: 5   LARPASAALRRS-----FSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA 59

Query: 66  -------DIVHTPGVAADLSHIESKAHVQAFNGADQL----------------------- 95
                  D+ H    AA   ++  +       G D +                       
Sbjct: 60  HTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNAT 119

Query: 96  -----------------------KGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDD 132
                                   GL+P  VNVPVIGGHAG TIIPLISQ TP V FP D
Sbjct: 120 IVATLTAACAQHCPEAMICVIANPGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQD 179

Query: 133 QLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD 192
           QL ALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS 
Sbjct: 180 QLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQ 239

Query: 193 VTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
            TE +YFSTP+ LGK GIE+NLG+GK+S FE++++  A+PELK +I KGE+FV
Sbjct: 240 ETECTYFSTPLLLGKKGIERNLGIGKVSSFEEKMISDAIPELKASIKKGEDFV 292

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426356630|ref|XP_004045662.1| PREDICTED: malate dehydrogenase, mitochondrial isoform 3 [Gorilla gorilla gorilla]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 141/270 (52%), Positives = 165/270 (61%), Gaps = 56/270 (20%)

Query: 32  NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY----------DIVHTPGVAADLSHIE 81
           NNAKV V GASGGIGQPLSLLLK SPLV  L+LY          D+ H    AA   ++ 
Sbjct: 23  NNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLG 82

Query: 82  SKAHVQAFNGADQL---------------------------------------------- 95
            +       G D +                                              
Sbjct: 83  PEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIAN 142

Query: 96  KGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGA 155
            GL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEAGTEVVKAKAGA
Sbjct: 143 PGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGA 202

Query: 156 GSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLG 215
           GSATLSMAYAGARF FSL+  + G+  V+EC++VKS  TE +YFSTP+ LGK GIEKNLG
Sbjct: 203 GSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKRGIEKNLG 262

Query: 216 LGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           +GK+S FE++++  A+PELK +I KGE+FV
Sbjct: 263 IGKVSSFEEKMISDAIPELKASIKKGEDFV 292

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395842984|ref|XP_003794286.1| PREDICTED: malate dehydrogenase, mitochondrial [Otolemur garnettii]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 143/281 (50%), Positives = 177/281 (62%), Gaps = 40/281 (14%)

Query: 2   VAGASGGIGQPLSLLLKQSPLVDHLSLYDI----------------------------NN 33
           V GASGGIGQPLSLLLK SPLV  L+LYDI                            N 
Sbjct: 29  VLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGMTRDDLFNT 88

Query: 34  AKVMVAGASGGIGQ--PLSLLL-------KQSPLVDHLSLYDIVHTPGVAADLSHIESKA 84
              +VA  +    Q  P +++           P+   +     V+ P     ++ ++   
Sbjct: 89  NATIVATLTAACAQHCPEAMICIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDI-- 146

Query: 85  HVQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEA 144
            V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEA
Sbjct: 147 -VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEA 205

Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVH 204
           GTEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  T+ +YFSTP+ 
Sbjct: 206 GTEVVKAKAGAGSATLSMAYAGARFVFSLLDAVNGKEGVVECSFVKSQETDCTYFSTPLL 265

Query: 205 LGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           LGK GIEKNLG+GK+S FE++++  A+PELK +I KGE+FV
Sbjct: 266 LGKKGIEKNLGIGKISSFEEKMIAEAIPELKASIKKGEDFV 306

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321457956|gb|EFX69032.1| mitochondrial malate dehydrogenase [Daphnia pulex]

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 124/163 (76%), Positives = 139/163 (85%)

Query: 86  VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
           V+A     +LKGL+PT VN PVIGGHAGITIIPLISQ  P VSFP DQLKALT RIQEAG
Sbjct: 178 VRANTFIAELKGLDPTTVNCPVIGGHAGITIIPLISQCMPGVSFPTDQLKALTERIQEAG 237

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
           TEVVKAKAGAGSATLSMA AGARFA SLI+ L+GE  V+ECAYV+SD+TE+ YFSTP+ L
Sbjct: 238 TEVVKAKAGAGSATLSMAMAGARFAVSLIRALRGEQGVVECAYVRSDLTESKYFSTPILL 297

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS 248
           G NGIEKNLGLG LSD+EK+LV A++PELKKNI KGEEFV K+
Sbjct: 298 GANGIEKNLGLGNLSDYEKQLVTASIPELKKNIKKGEEFVQKN 340

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375761|gb|AEE63021.1| unknown [Dendroctonus ponderosae]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 124/152 (81%), Positives = 140/152 (92%)

Query: 96  KGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGA 155
           KGLNP DV++PVIGGH+G+TIIPLIS+ATPSVSFP+DQLKALT RIQEAGTEVVKAKAGA
Sbjct: 184 KGLNPKDVSIPVIGGHSGVTIIPLISRATPSVSFPEDQLKALTTRIQEAGTEVVKAKAGA 243

Query: 156 GSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLG 215
           GSATLSMAYAGARFA SL++GLKGESNVIE AYV SDVTE+ YFSTP+ LGKNGIEKNLG
Sbjct: 244 GSATLSMAYAGARFANSLLRGLKGESNVIEPAYVVSDVTESEYFSTPLLLGKNGIEKNLG 303

Query: 216 LGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
           LGKLSD+E++L+KAA+PELKKNI  G +F  K
Sbjct: 304 LGKLSDYEQQLLKAAIPELKKNIKAGVDFAKK 335

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
ZFIN|ZDB-GENE-040426-2143	337	mdh2 "malate dehydrogenase 2,	0.649	0.477	0.714	8.5e-75
UNIPROTKB|P40926	338	MDH2 "Malate dehydrogenase, mi	0.645	0.473	0.693	2.3e-72
UNIPROTKB|Q5NVR2	338	MDH2 "Malate dehydrogenase, mi	0.645	0.473	0.693	2.3e-72
UNIPROTKB|Q4R568	338	MDH2 "Malate dehydrogenase, mi	0.645	0.473	0.681	2e-71
UNIPROTKB|E9PDB2	296	MDH2 "Malate dehydrogenase, mi	0.600	0.503	0.718	4.2e-71
RGD|619719	338	Mdh2 "malate dehydrogenase 2,	0.645	0.473	0.675	5.3e-71
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.612	0.449	0.703	6.8e-71
UNIPROTKB|P00346	338	MDH2 "Malate dehydrogenase, mi	0.612	0.449	0.703	6.8e-71
MGI|MGI:97050	338	Mdh2 "malate dehydrogenase 2,	0.645	0.473	0.668	6.8e-71
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.653	0.480	0.674	8.6e-71

ZFIN|ZDB-GENE-040426-2143 mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Danio rerio (taxid:7955)]

 Score = 576 (207.8 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
 Identities = 115/161 (71%), Positives = 133/161 (82%)

Query:    86 VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
             V+A     +LKGL+P  VNVPV+GGHAGITIIPLISQ TP V FP DQL ALTGRIQEAG
Sbjct:   174 VRANTFVAELKGLDPARVNVPVVGGHAGITIIPLISQCTPKVEFPADQLSALTGRIQEAG 233

Query:   146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
             TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++V+S+ TE  YFSTP+ L
Sbjct:   234 TEVVKAKAGAGSATLSMAYAGARFTFSLLDAMNGKEGVVECSFVRSEETECKYFSTPLLL 293

Query:   206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA 246
             GKNGIEKNLGLGKLS FE++LV  A+ ELK +I KGE+FVA
Sbjct:   294 GKNGIEKNLGLGKLSAFEEKLVADAMTELKGSIKKGEDFVA 334

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

UNIPROTKB|P40926 MDH2 "Malate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 570 (205.7 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
 Identities = 111/160 (69%), Positives = 131/160 (81%)

Query:    86 VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
             V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEAG
Sbjct:   175 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAG 234

Query:   146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
             TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  TE +YFSTP+ L
Sbjct:   235 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLL 294

Query:   206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
             GK GIEKNLG+GK+S FE++++  A+PELK +I KGE+FV
Sbjct:   295 GKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFV 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006107 "oxaloacetate metabolic process" evidence=IEA

GO:0006734 "NADH metabolic process" evidence=IEA

GO:0043621 "protein self-association" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IDA;IMP

GO:0030060 "L-malate dehydrogenase activity" evidence=EXP;IDA;IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0006475 "internal protein amino acid acetylation" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0006094 "gluconeogenesis" evidence=TAS

GO:0006099 "tricarboxylic acid cycle" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q5NVR2 MDH2 "Malate dehydrogenase, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 570 (205.7 bits), Expect = 2.3e-72, Sum P(2) = 2.3e-72
 Identities = 111/160 (69%), Positives = 131/160 (81%)

Query:    86 VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
             V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEAG
Sbjct:   175 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAG 234

Query:   146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
             TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  TE +YFSTP+ L
Sbjct:   235 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLL 294

Query:   206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
             GK GIEKNLG+GK+S FE++++  A+PELK +I KGE+FV
Sbjct:   295 GKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFV 334

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

UNIPROTKB|Q4R568 MDH2 "Malate dehydrogenase, mitochondrial" [Macaca fascicularis (taxid:9541)]

 Score = 562 (202.9 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
 Identities = 109/160 (68%), Positives = 130/160 (81%)

Query:    86 VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
             V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEAG
Sbjct:   175 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAG 234

Query:   146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
             TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  TE +YFSTP+ L
Sbjct:   235 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLL 294

Query:   206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
             GK GIEKNLG+G++  FE++++  A+PELK +I KGE+FV
Sbjct:   295 GKKGIEKNLGIGQIPSFEEKMISDAIPELKASIKKGEDFV 334

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

UNIPROTKB|E9PDB2 MDH2 "Malate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 558 (201.5 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
 Identities = 107/149 (71%), Positives = 125/149 (83%)

Query:    97 GLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAG 156
             GL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEAGTEVVKAKAGAG
Sbjct:   144 GLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAG 203

Query:   157 SATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGL 216
             SATLSMAYAGARF FSL+  + G+  V+EC++VKS  TE +YFSTP+ LGK GIEKNLG+
Sbjct:   204 SATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGI 263

Query:   217 GKLSDFEKELVKAAVPELKKNIAKGEEFV 245
             GK+S FE++++  A+PELK +I KGE+FV
Sbjct:   264 GKVSSFEEKMISDAIPELKASIKKGEDFV 292

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

RGD|619719 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Rattus norvegicus (taxid:10116)]

 Score = 557 (201.1 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
 Identities = 108/160 (67%), Positives = 130/160 (81%)

Query:    86 VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
             V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL  LTGRIQEAG
Sbjct:   175 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAG 234

Query:   146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
             TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  VIEC++V+S  TE +YFSTP+ L
Sbjct:   235 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVIECSFVQSKETECTYFSTPLLL 294

Query:   206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
             GK G+EKNLG+GK++ FE++++  A+PELK +I KGE+FV
Sbjct:   295 GKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFV 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0006107 "oxaloacetate metabolic process" evidence=IDA

GO:0006108 "malate metabolic process" evidence=ISO;IDA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO;ISS

GO:0006734 "NADH metabolic process" evidence=IDA

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 559 (201.8 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
 Identities = 107/152 (70%), Positives = 126/152 (82%)

Query:    94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
             +LKGL+P  V+VPVIGGHAG TIIPLISQ TP V FP DQL  LTGRIQEAGTEVVKAKA
Sbjct:   183 ELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKA 242

Query:   154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
             GAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  T+  YFSTP+ LGK GIEKN
Sbjct:   243 GAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKN 302

Query:   214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
             LG+GK+S FE++++  A+PELK +I KGEEFV
Sbjct:   303 LGIGKISPFEEKMIAEAIPELKASIKKGEEFV 334

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 559 (201.8 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
 Identities = 107/152 (70%), Positives = 126/152 (82%)

Query:    94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
             +LKGL+P  V+VPVIGGHAG TIIPLISQ TP V FP DQL  LTGRIQEAGTEVVKAKA
Sbjct:   183 ELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKA 242

Query:   154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
             GAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  T+  YFSTP+ LGK GIEKN
Sbjct:   243 GAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKN 302

Query:   214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
             LG+GK+S FE++++  A+PELK +I KGEEFV
Sbjct:   303 LGIGKISPFEEKMIAEAIPELKASIKKGEEFV 334

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:97050 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Mus musculus (taxid:10090)]

 Score = 556 (200.8 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
 Identities = 107/160 (66%), Positives = 130/160 (81%)

Query:    86 VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
             V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL  LTGRIQEAG
Sbjct:   175 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAG 234

Query:   146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
             TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++V+S  TE +YFSTP+ L
Sbjct:   235 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLL 294

Query:   206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
             GK G+EKNLG+GK++ FE++++  A+PELK +I KGE+FV
Sbjct:   295 GKKGLEKNLGIGKITPFEEKMIAEAIPELKASIKKGEDFV 334

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;ISA;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0006107 "oxaloacetate metabolic process" evidence=ISO

GO:0006108 "malate metabolic process" evidence=ISO;ISA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=ISO;ISA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=ISO

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISA;IDA

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 552 (199.4 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
 Identities = 110/163 (67%), Positives = 134/163 (82%)

Query:    86 VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
             V+A     +LKGL+P  V+VPVIGGHAG TIIPLISQ TP V FP DQL+ LTGRIQEAG
Sbjct:   174 VRANTFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAG 233

Query:   146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
             TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  VIEC++V+S+ TE+ YFSTP+ L
Sbjct:   234 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVIECSFVRSEETESPYFSTPLLL 293

Query:   206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS 248
             GKNGIEKNLG+GK++ FE+++V  A+ ELK +I KGE+F AK+
Sbjct:   294 GKNGIEKNLGIGKITPFEEKMVAEAMAELKASIKKGEDF-AKN 335

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.6937	0.625	0.4585	yes	N/A
B1LGK2	MDH_ECOSM	1, ., 1, ., 1, ., 3, 7	0.5714	0.6169	0.4903	yes	N/A
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.6687	0.6451	0.4733	yes	N/A
B5XSQ7	MDH_KLEP3	1, ., 1, ., 1, ., 3, 7	0.3954	0.9798	0.7788	yes	N/A
Q31WA4	MDH_SHIBS	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
Q9ZP06	MDHM1_ARATH	1, ., 1, ., 1, ., 3, 7	0.6223	0.5766	0.4193	yes	N/A
A7MNR3	MDH_CROS8	1, ., 1, ., 1, ., 3, 7	0.3883	0.9879	0.7852	yes	N/A
B7N0M1	MDH_ECO81	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
Q0TCN0	MDH_ECOL5	1, ., 1, ., 1, ., 3, 7	0.5714	0.6169	0.4903	yes	N/A
B4F2A1	MDH_PROMH	1, ., 1, ., 1, ., 3, 7	0.5779	0.6169	0.4903	yes	N/A
B7UJW8	MDH_ECO27	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
Q1R6A3	MDH_ECOUT	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.7039	0.6129	0.4497	yes	N/A
A1AGC9	MDH_ECOK1	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
C4ZSX4	MDH_ECOBW	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
B2U1U9	MDH_SHIB3	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
A6TEQ3	MDH_KLEP7	1, ., 1, ., 1, ., 3, 7	0.3954	0.9798	0.7788	yes	N/A
B7MBZ7	MDH_ECO45	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.6312	0.6290	0.4574	yes	N/A
B7LHU4	MDH_ECO55	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
A8A545	MDH_ECOHS	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.6937	0.625	0.4585	yes	N/A
A7ZSD0	MDH_ECO24	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.675	0.625	0.4585	yes	N/A
B6I1V4	MDH_ECOSE	1, ., 1, ., 1, ., 3, 7	0.3954	0.9798	0.7788	yes	N/A
B1XHK9	MDH_ECODH	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
B2VGW7	MDH_ERWT9	1, ., 1, ., 1, ., 3, 7	0.4104	0.9798	0.7813	yes	N/A
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.7039	0.6129	0.4497	yes	N/A
B7NKU9	MDH_ECO7I	1, ., 1, ., 1, ., 3, 7	0.5714	0.6169	0.4903	yes	N/A
B7NDL4	MDH_ECOLU	1, ., 1, ., 1, ., 3, 7	0.5714	0.6169	0.4903	yes	N/A
Q3YX11	MDH_SHISS	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
P61890	MDH_ECOL6	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
A4WF48	MDH_ENT38	1, ., 1, ., 1, ., 3, 7	0.3948	0.9879	0.7852	yes	N/A
Q7MYW9	MDH_PHOLL	1, ., 1, ., 1, ., 3, 7	0.5657	0.6088	0.4839	yes	N/A
B5YSW2	MDH_ECO5E	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A
A8AQC8	MDH_CITK8	1, ., 1, ., 1, ., 3, 7	0.5844	0.6169	0.4903	yes	N/A
B7M0U8	MDH_ECO8A	1, ., 1, ., 1, ., 3, 7	0.5649	0.6169	0.4903	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921
3rd Layer	1.1.1.37	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	248
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	1e-93
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	3e-76
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-75
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	6e-69
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	2e-62
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	4e-51
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	3e-31
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	3e-26
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	4e-25
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	4e-22
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	3e-20
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	2e-15
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	1e-13
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	3e-12
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	1e-11
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	6e-10
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	1e-07
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	4e-07
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	1e-06
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	1e-06
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	3e-06
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	3e-05
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	1e-04

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  277 bits (710), Expect = 1e-93
 Identities = 108/152 (71%), Positives = 132/152 (86%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +L GL+P  VNVPVIGGH+G+TI+PL+SQ  P  +F  ++++ALT RIQ  G EVVKAKA
Sbjct: 159 ELLGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKA 218

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           GAGSATLSMAYAGARFA SL++GLKGE  VIECAYV+SDVTEA +F+TPV LGKNG+EKN
Sbjct: 219 GAGSATLSMAYAGARFANSLLRGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKN 278

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           LGLGKL+D+EK+L++AA+PELKKNI KG +FV
Sbjct: 279 LGLGKLNDYEKKLLEAALPELKKNIEKGVDFV 310

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  233 bits (596), Expect = 3e-76
 Identities = 92/147 (62%), Positives = 125/147 (85%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           + KGL+P DV+VPV+GGHAGITI+PL+SQATP VSF D++++ALT RIQ  GTEVV+AKA
Sbjct: 177 EKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKA 236

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           GAGSATLSMAYA ARFA + ++GL GE++V+EC+YV+S+VTE  +F++ V LG+NG+E+ 
Sbjct: 237 GAGSATLSMAYAAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEV 296

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAK 240
           LGLG LS++E++ ++A  PELK +I K
Sbjct: 297 LGLGPLSEYEQKGLEALKPELKASIEK 323

Length = 323

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  231 bits (591), Expect = 1e-75
 Identities = 109/155 (70%), Positives = 131/155 (84%), Gaps = 1/155 (0%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKG +P +VNVPVIGGH+G TIIPLISQ    V F +DQL+AL  RIQ AGTEVVKAKA
Sbjct: 158 ELKGKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKA 217

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD-VTEASYFSTPVHLGKNGIEK 212
           GAGSATLSMA+AGARF  SL++GLKGE  V+ECAYV+SD VTEA++F+TP+ LGKNG+EK
Sbjct: 218 GAGSATLSMAFAGARFVLSLVRGLKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEK 277

Query: 213 NLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
            LG+GKLS FE++++  A+PELKKNI KGEEFVA 
Sbjct: 278 RLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVAS 312

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  214 bits (546), Expect = 6e-69
 Identities = 88/154 (57%), Positives = 113/154 (73%), Gaps = 1/154 (0%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKG  P +V VPVIGGH+G+TI+PL+SQ  P VSF + ++  LT RIQ AGTEVV+AKA
Sbjct: 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKA 218

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           G GSATLSM  A ARF  SL++ L+GE  V+ECAYV+ D   A +F+ PV LGKNG+E+ 
Sbjct: 219 GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEER 278

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
           L +G LS FE+  ++  +  LKK+IA GEEFV K
Sbjct: 279 LPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  197 bits (504), Expect = 2e-62
 Identities = 84/152 (55%), Positives = 120/152 (78%), Gaps = 3/152 (1%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAG 156
           G+NP DVNVPV+GGH+G+TI+PL+SQ    +S P++Q++ +T R+Q  G EVVKAK GAG
Sbjct: 170 GMNPYDVNVPVVGGHSGVTIVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAG 227

Query: 157 SATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVT-EASYFSTPVHLGKNGIEKNLG 215
           SATLSMAYA A ++ S+++ L+G+  ++ECA+V+SD+  E  +FS+PV LGK G+E+ L 
Sbjct: 228 SATLSMAYAAAEWSTSVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLP 287

Query: 216 LGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
           +G L+ +E+EL++AAVP+LKKNI KG EF  K
Sbjct: 288 IGPLNAYEEELLEAAVPDLKKNIEKGLEFARK 319

Length = 321

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  164 bits (416), Expect = 4e-51
 Identities = 71/164 (43%), Positives = 97/164 (59%), Gaps = 16/164 (9%)

Query: 94  QLKGLNPTDVNVPVIGGHAG----------ITIIPLISQATPSVSFPDDQLKALTGRIQE 143
           +  G++P  VNV VIG H+G          +TIIPLISQ   ++   D +L+ L  R+Q 
Sbjct: 14  EKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDTDWELEELIERVQN 73

Query: 144 AGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESN--VIECAYVKSDVTEASYFST 201
           AG EV++AK  AGS T SMAYA AR A ++++G  G  +  V    Y  S      YFS 
Sbjct: 74  AGYEVIEAK--AGSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDGYYGSPDDI--YFSV 129

Query: 202 PVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           PV LGK+G+EK + +  L+DFE+E ++ +  ELKK I KG  FV
Sbjct: 130 PVVLGKDGVEKVVEILPLNDFEREKLEKSAAELKKEIEKGFAFV 173

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  116 bits (294), Expect = 3e-31
 Identities = 42/62 (67%), Positives = 50/62 (80%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQ 94
          KV V GA+GGIGQPLSLLLK +PLV  L+LYDIV+TPGVAADLSHI + A V  + G ++
Sbjct: 2  KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEE 61

Query: 95 LK 96
          LK
Sbjct: 62 LK 63

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  103 bits (259), Expect = 3e-26
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 15/163 (9%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPS--------VSFPDDQLKALTGRIQEAG 145
           +  G++P DV+  VIG H G T++PL SQAT              ++ L+ L  R++ AG
Sbjct: 157 EKLGVSPKDVHAYVIGEH-GDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAG 215

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD-VTEASYFSTPVH 204
            E+++AK          A A AR   ++++  K    +    Y+  +   E  YF  P  
Sbjct: 216 AEIIEAKGA--GTYYGPAAALARMVEAILRDEK--RVLPVSVYLDGEYGVEDVYFGVPAV 271

Query: 205 LGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
           LGKNG+E+ L L  LSD E+E +  +  ELKKNI   +E V  
Sbjct: 272 LGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIELVKELVLI 313

Length = 313

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  100 bits (252), Expect = 4e-25
 Identities = 41/63 (65%), Positives = 48/63 (76%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQ 94
          KV V GA+GGIGQPLSLL+K +PLV  L LYDI +TPGVAAD+SHI + A V+ F G DQ
Sbjct: 20 KVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQ 79

Query: 95 LKG 97
          L  
Sbjct: 80 LGD 82

Length = 323

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score = 92.5 bits (230), Expect = 4e-22
 Identities = 44/76 (57%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 35  KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQ 94
           KV V GA+GGIGQPLSLLLK  P V  LSLYDI    GVAADLSHI + A V+ F+G + 
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 95  LK-GLNPTDVNVPVIG 109
           L+  L   DV V   G
Sbjct: 61  LENALKGADVVVIPAG 76

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score = 87.4 bits (217), Expect = 3e-20
 Identities = 39/56 (69%), Positives = 44/56 (78%)

Query: 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAF 89
           KV V GA+GGIGQPLSLLLKQ+P V  LSLYDIV  PGVAADLSHI++ A V  +
Sbjct: 9  FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGY 64

Length = 321

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 39/71 (54%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 35  KVMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH-TPGVAADLSHIESKAHVQAFNGA 92
           KV V GA+GGIGQ L+LLLK Q P    LSLYDI   TPGVA DLSHI +   ++ F+G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 93  DQLKGLNPTDV 103
           D    L   DV
Sbjct: 62  DPTPALEGADV 72

Length = 312

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 35  KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV--HTPGVAADLSHIESKAHVQAFNGA 92
           KV V GA GG+G  L+  L    L D L L DI      GVA DLSH  +   V    G 
Sbjct: 2   KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGG 61

Query: 93  DQLKGLNPTDVNVPVIGG 110
           D  + L   DV V +  G
Sbjct: 62  DDYEALKDADV-VVITAG 78

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score = 64.8 bits (159), Expect = 3e-12
 Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 21/154 (13%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT-----PSVSFPDDQLKALTGRIQEAGTEVVKA 151
           G++  DV   V+GGH G T++PL   +T      +     +++  +  R +  G E+V  
Sbjct: 157 GVSVKDVQAMVLGGH-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNL 215

Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
               GSA  + A A A    ++   LK +  V+ C+      Y   D+    +   PV L
Sbjct: 216 L-KTGSAYYAPAAAIAEMVEAI---LKDKKRVLPCSAYLEGEYGIKDI----FVGVPVVL 267

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 239
           GKNG+EK + L  L+D EKE    +V  +K+ I 
Sbjct: 268 GKNGVEKIIEL-DLTDEEKEAFDKSVESVKELID 300

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score = 62.8 bits (154), Expect = 1e-11
 Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 21/155 (13%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT-----PSVSFPDDQLKALTGRIQEAGTEVVKA 151
            ++  DV   V+GGH G +++PL+  +T            ++L  +  R ++ G E+V  
Sbjct: 161 NVSVKDVTAFVLGGH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGL 219

Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYFSTPVHL 205
               GSA  + A + A    ++   LK +  V+ C AY++      DV    Y   PV L
Sbjct: 220 L-KTGSAYYAPAASIAEMVEAI---LKDKKRVLPCSAYLEGEYGVKDV----YVGVPVKL 271

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           GKNG+EK + L +L D EK     +V  +KK I  
Sbjct: 272 GKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEA 305

Length = 307

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score = 58.2 bits (141), Expect = 6e-10
 Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 27/160 (16%)

Query: 92  ADQLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF------PDDQLKALTGRI 141
           A++L G+NP DV+  VIG H G  ++PL    T    P   F        +++  +  R 
Sbjct: 166 AEKL-GVNPRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERT 223

Query: 142 QEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTE 195
           +  G E+V    G GSA  + A A    A +    LK +  V+ C+      Y   D+  
Sbjct: 224 RNTGKEIVDL-LGTGSAYFAPAAAAIEMAEAY---LKDKKRVLPCSAYLEGQYGHKDI-- 277

Query: 196 ASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELK 235
             Y  TP  +G NG+EK + L  L+  E++    ++ E+K
Sbjct: 278 --YMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESIKEVK 314

Length = 321

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 20/157 (12%)

Query: 92  ADQLKGLNPTDVNVPVIGGHAGITIIPLISQAT-------PSVSFPDDQLKALTGRIQEA 144
           A++L  ++P  V+  V+G H G + +   S AT           F    L+A+   ++ +
Sbjct: 153 AEKLD-VDPQSVHAYVLGEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTS 210

Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGE---SNVIECAYVKSDVTEASYFST 201
           G E+++ K   G+    +A A A    S++   +     S V E  Y   DV      S 
Sbjct: 211 GYEIIRLK---GATNYGIATAIADIVKSILLDERRVLPVSAVQEGQYGIEDV----ALSV 263

Query: 202 PVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI 238
           P  +G+ G+ + L    L++ E+  ++ +   LK+ +
Sbjct: 264 PAVVGREGVVRIL-EIPLTEDEEAKLQKSAEALKEVL 299

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 7/69 (10%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHI----ESKAHVQA 88
          KV V GA G +G  L+ LL    L   L L DI      GVA DLSH      S   +  
Sbjct: 2  KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG 60

Query: 89 FNGADQLKG 97
              + LKG
Sbjct: 61 DGDYEDLKG 69

Length = 313

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 24/159 (15%)

Query: 92  ADQLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFP-------DDQLKALTGR 140
           A++L G++P  V+  +IG H G + +P+ S AT    P + +        D  L+ +   
Sbjct: 151 AEKL-GVDPQSVHAYIIGEH-GDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKE 208

Query: 141 IQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGE---SNVIECAYVKSDVTEAS 197
           +++A  E++  K   G+    +  A AR   +++         S  ++  Y   DV    
Sbjct: 209 VRDAAYEIINRK---GATYYGIGMAVARIVEAILHDENRVLPVSAYLDGEYGIKDV---- 261

Query: 198 YFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
           Y   P  LG+NG+E+ + L  LSD EKE  + +   LKK
Sbjct: 262 YIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK 299

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 29/166 (17%)

Query: 92  ADQLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF------PDDQLKALTGRI 141
           A++L G++P DV+  VIGGH G  ++PL    T    P   F       + ++  +  + 
Sbjct: 160 AEKL-GVSPGDVSAVVIGGH-GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKT 217

Query: 142 QEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQG-LKGESNVIECA------YVKSDVT 194
           +  G E+VK     GSA     +A A    ++I+  LK E  V+ C+      Y   ++ 
Sbjct: 218 RNMGGEIVKL-LKKGSAF----FAPAAAIVAMIEAYLKDEKRVLVCSVYLNGQYNCKNL- 271

Query: 195 EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
              +   PV +G  GIEK + L +L+  EKEL   ++  +++   K
Sbjct: 272 ---FVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQELTQK 313

Length = 319

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 13/149 (8%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
           G++  DV   V+GGH G  ++PL+  +T    P       +++  +  R ++ G E+V  
Sbjct: 160 GVSVQDVTACVLGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNL 218

Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVKSDV-TEASYFSTPVHLGKNG 209
               GSA  + A +      ++   LK    V+ C AY+      +  Y   PV LGKNG
Sbjct: 219 -LKQGSAYYAPAASVVEMVEAI---LKDRKRVLPCAAYLDGQYGIDGIYVGVPVILGKNG 274

Query: 210 IEKNLGLGKLSDFEKELVKAAVPELKKNI 238
           +E    L KL   E  L+  +   + +N 
Sbjct: 275 VEHIYEL-KLDQSELALLNKSAKIVDENC 302

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 22/157 (14%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
            ++P  V+  V+G H G +     S  T                +  L  +   +++AG 
Sbjct: 159 NVDPRSVHAYVLGEH-GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGY 217

Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGE---SNVIECAYVKSDVTEASYFSTPV 203
           E++  K   G+    +A A AR   +++         S  ++  Y + DV    Y   P 
Sbjct: 218 EIINGK---GATYYGIATALARIVKAILNDENAILPVSAYLDGEYGEKDV----YIGVPA 270

Query: 204 HLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
            +G+NG+E+ + L  L++ E+E  + +   +K+NI K
Sbjct: 271 IIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENIKK 306

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 47/149 (31%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +  G++P DV V ++G H G + +P  S    + S                         
Sbjct: 157 EKLGVDPDDVKVYILGEHGG-SQVPDWSTVRIATSI------------------------ 191

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD----VTEASYFSTPVHLGKNG 209
                        A    SL   L  E   I    V+++    + +    S P  +GKNG
Sbjct: 192 -------------ADLIRSL---LNDE-GEILPVGVRNNGQIGIPDDVVVSVPCIVGKNG 234

Query: 210 IEKNLGLGKLSDFEKELVKAAVPELKKNI 238
           +E+ + +G L+DFE E ++ +   LKK +
Sbjct: 235 VEEPIEVG-LTDFELEKLQKSADTLKKEL 262

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
PLN00106	323	malate dehydrogenase	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
PLN02602	350	lactate dehydrogenase	100.0
KOG1495|consensus	332		100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
KOG1494|consensus	345		100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
PLN00135	309	malate dehydrogenase	100.0
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	99.97
KOG1496|consensus	332		99.95
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	99.36
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	98.87
PRK15076	431	alpha-galactosidase; Provisional	98.57
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	98.51
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	98.48
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	97.96
KOG1494|consensus	345		97.22
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.2
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.14
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.91
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.78
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.63
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.53
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.47
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.34
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.31
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.29
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.24
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.16
KOG1429|consensus	350		95.1
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.03
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	95.0
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.0
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.98
PLN02572	442	UDP-sulfoquinovose synthase	94.96
PLN02166	436	dTDP-glucose 4,6-dehydratase	94.92
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	94.9
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.83
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.83
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.8
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	94.79
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	94.75
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.71
PRK07236	386	hypothetical protein; Provisional	94.71
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	94.67
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	94.64
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	94.63
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.62
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.61
PRK06153	393	hypothetical protein; Provisional	94.6
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.56
PLN02353	473	probable UDP-glucose 6-dehydrogenase	94.55
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.48
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.48
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.43
PLN02427	386	UDP-apiose/xylose synthase	94.39
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.33
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.31
PLN02206	442	UDP-glucuronate decarboxylase	94.3
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	94.23
PRK08507	275	prephenate dehydrogenase; Validated	94.23
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	94.12
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.11
PLN02778	298	3,5-epimerase/4-reductase	94.08
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.04
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.02
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.99
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.99
CHL00194	317	ycf39 Ycf39; Provisional	93.98
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	93.98
PRK07417	279	arogenate dehydrogenase; Reviewed	93.95
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.88
PRK08328	231	hypothetical protein; Provisional	93.83
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.82
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.78
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	93.75
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.75
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	93.74
TIGR00036	266	dapB dihydrodipicolinate reductase.	93.72
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.72
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	93.7
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.69
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.68
COG2910	211	Putative NADH-flavin reductase [General function p	93.66
PRK05868	372	hypothetical protein; Validated	93.65
PLN02653	340	GDP-mannose 4,6-dehydratase	93.64
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.64
COG0300	265	DltE Short-chain dehydrogenases of various substra	93.58
PRK06753	373	hypothetical protein; Provisional	93.57
PTZ00431	260	pyrroline carboxylate reductase; Provisional	93.55
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	93.55
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	93.53
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.51
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.5
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	93.49
PLN02695	370	GDP-D-mannose-3',5'-epimerase	93.44
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.41
PRK07023	243	short chain dehydrogenase; Provisional	93.37
PRK15116	268	sulfur acceptor protein CsdL; Provisional	93.36
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	93.36
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	93.35
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	93.33
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	93.33
PRK10675	338	UDP-galactose-4-epimerase; Provisional	93.28
PLN00198	338	anthocyanidin reductase; Provisional	93.27
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.27
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	93.23
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.17
PRK07877	722	hypothetical protein; Provisional	93.17
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	93.16
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	93.16
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.14
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	93.1
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.05
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	93.03
PRK08013	400	oxidoreductase; Provisional	93.0
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	92.96
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	92.94
PRK06847	375	hypothetical protein; Provisional	92.94
PLN02896	353	cinnamyl-alcohol dehydrogenase	92.93
PLN02240	352	UDP-glucose 4-epimerase	92.92
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	92.92
PRK08223	287	hypothetical protein; Validated	92.89
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.87
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	92.84
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	92.8
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	92.78
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	92.7
PRK05866	293	short chain dehydrogenase; Provisional	92.69
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	92.68
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	92.68
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	92.66
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	92.58
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.54
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.53
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	92.52
PLN02650	351	dihydroflavonol-4-reductase	92.48
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	92.48
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	92.44
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.4
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.39
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	92.35
PRK06194	287	hypothetical protein; Provisional	92.34
PRK08163	396	salicylate hydroxylase; Provisional	92.34
PRK13512	438	coenzyme A disulfide reductase; Provisional	92.33
PRK07326	237	short chain dehydrogenase; Provisional	92.3
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	92.27
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	92.26
PLN02697	529	lycopene epsilon cyclase	92.26
PLN02688	266	pyrroline-5-carboxylate reductase	92.16
PRK14982	340	acyl-ACP reductase; Provisional	92.15
PRK06184	502	hypothetical protein; Provisional	92.1
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	92.09
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	92.08
PRK07680	273	late competence protein ComER; Validated	92.08
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	92.07
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	92.04
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	92.03
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	92.03
PRK07588	391	hypothetical protein; Provisional	92.03
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	92.02
PRK11728	393	hydroxyglutarate oxidase; Provisional	92.01
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	91.99
PRK11730	715	fadB multifunctional fatty acid oxidation complex	91.98
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	91.97
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	91.97
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	91.95
PRK10538	248	malonic semialdehyde reductase; Provisional	91.93
PRK07045	388	putative monooxygenase; Reviewed	91.92
PRK07102	243	short chain dehydrogenase; Provisional	91.89
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	91.87
PRK07538	413	hypothetical protein; Provisional	91.85
PRK08085	254	gluconate 5-dehydrogenase; Provisional	91.84
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	91.84
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	91.8
KOG1430|consensus	361		91.79
PRK09564	444	coenzyme A disulfide reductase; Reviewed	91.77
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	91.77
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	91.76
PRK09242	257	tropinone reductase; Provisional	91.75
PRK05717	255	oxidoreductase; Validated	91.7
PRK06185	407	hypothetical protein; Provisional	91.64
PRK06057	255	short chain dehydrogenase; Provisional	91.6
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	91.6
PRK12828	239	short chain dehydrogenase; Provisional	91.53
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	91.52
PLN02253	280	xanthoxin dehydrogenase	91.5
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	91.49
PRK12480	330	D-lactate dehydrogenase; Provisional	91.46
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	91.45
PRK08251	248	short chain dehydrogenase; Provisional	91.45
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	91.42
KOG1371|consensus	343		91.4
PRK07411	390	hypothetical protein; Validated	91.39
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	91.35
PRK14851	679	hypothetical protein; Provisional	91.34
PRK05875	276	short chain dehydrogenase; Provisional	91.33
PRK06914	280	short chain dehydrogenase; Provisional	91.3
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	91.29
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	91.24
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	91.23
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	91.23
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	91.23
PRK06126	545	hypothetical protein; Provisional	91.19
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	91.16
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	91.15
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	91.15
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	91.13
PRK08177	225	short chain dehydrogenase; Provisional	91.13
PRK06124	256	gluconate 5-dehydrogenase; Provisional	91.11
PRK12827	249	short chain dehydrogenase; Provisional	91.1
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	91.09
PRK12829	264	short chain dehydrogenase; Provisional	91.08
PLN02214	342	cinnamoyl-CoA reductase	91.07
PRK06924	251	short chain dehydrogenase; Provisional	91.06
PRK06996	398	hypothetical protein; Provisional	91.05
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	91.04
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.03
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	91.02
PLN02256	304	arogenate dehydrogenase	91.02
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	91.0
PRK08267	260	short chain dehydrogenase; Provisional	91.0
PRK12320	699	hypothetical protein; Provisional	90.98
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	90.97
KOG2304|consensus	298		90.93
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	90.92
PRK07523	255	gluconate 5-dehydrogenase; Provisional	90.91
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	90.89
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	90.89
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	90.89
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	90.88
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	90.88
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	90.87
PRK07190	487	hypothetical protein; Provisional	90.87
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	90.86
PRK07890	258	short chain dehydrogenase; Provisional	90.84
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	90.84
PRK09135	249	pteridine reductase; Provisional	90.82
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	90.79
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	90.77
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	90.76
PRK07774	250	short chain dehydrogenase; Provisional	90.74
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	90.74
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	90.74
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	90.69
PRK07063	260	short chain dehydrogenase; Provisional	90.68
PRK07060	245	short chain dehydrogenase; Provisional	90.67
PRK05854	313	short chain dehydrogenase; Provisional	90.65
PRK07814	263	short chain dehydrogenase; Provisional	90.65
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	90.64
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	90.63
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	90.62
PRK07856	252	short chain dehydrogenase; Provisional	90.59
PLN00016	378	RNA-binding protein; Provisional	90.57
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	90.57
PRK08264	238	short chain dehydrogenase; Validated	90.56
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	90.55
PRK06138	252	short chain dehydrogenase; Provisional	90.54
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	90.51
PRK05884	223	short chain dehydrogenase; Provisional	90.5
PLN02260	668	probable rhamnose biosynthetic enzyme	90.49
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	90.44
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	90.42
PRK06197	306	short chain dehydrogenase; Provisional	90.39
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	90.39
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	90.38
PRK06500	249	short chain dehydrogenase; Provisional	90.35
PRK09009	235	C factor cell-cell signaling protein; Provisional	90.35
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	90.33
PLN02583	297	cinnamoyl-CoA reductase	90.32
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	90.32
PRK08340	259	glucose-1-dehydrogenase; Provisional	90.31
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	90.3
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	90.27
PRK12939	250	short chain dehydrogenase; Provisional	90.27
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	90.25
PRK06180	277	short chain dehydrogenase; Provisional	90.25
PRK15059	292	tartronate semialdehyde reductase; Provisional	90.24
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	90.24
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	90.24
PRK09186	256	flagellin modification protein A; Provisional	90.24
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	90.23
PRK10157	428	putative oxidoreductase FixC; Provisional	90.22
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.19
PRK11445	351	putative oxidoreductase; Provisional	90.11
PRK06475	400	salicylate hydroxylase; Provisional	90.09
PLN02780	320	ketoreductase/ oxidoreductase	90.05
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	90.03
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	90.01
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	90.01
PRK07024	257	short chain dehydrogenase; Provisional	90.01
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	89.99
PRK00048	257	dihydrodipicolinate reductase; Provisional	89.96
PRK07577	234	short chain dehydrogenase; Provisional	89.95
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	89.94
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	89.93
PRK06523	260	short chain dehydrogenase; Provisional	89.91
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	89.88
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	89.84
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	89.79
PRK06172	253	short chain dehydrogenase; Provisional	89.79
PRK06841	255	short chain dehydrogenase; Provisional	89.79
PRK07806	248	short chain dehydrogenase; Provisional	89.74
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.72
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	89.69
PRK08278	273	short chain dehydrogenase; Provisional	89.67
PRK07478	254	short chain dehydrogenase; Provisional	89.66
PRK14852	989	hypothetical protein; Provisional	89.66
PRK07825	273	short chain dehydrogenase; Provisional	89.65
PRK07035	252	short chain dehydrogenase; Provisional	89.65
PRK08017	256	oxidoreductase; Provisional	89.59
PRK07208	479	hypothetical protein; Provisional	89.54
PRK08703	239	short chain dehydrogenase; Provisional	89.54
PRK08132	547	FAD-dependent oxidoreductase; Provisional	89.53
PRK06834	488	hypothetical protein; Provisional	89.52
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	89.5
PRK04148	134	hypothetical protein; Provisional	89.5
PRK06953	222	short chain dehydrogenase; Provisional	89.47
PRK08643	256	acetoin reductase; Validated	89.44
PLN02464	627	glycerol-3-phosphate dehydrogenase	89.44
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	89.44
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	89.42
PRK10015	429	oxidoreductase; Provisional	89.41
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	89.38
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	89.38
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.31
PRK08277	278	D-mannonate oxidoreductase; Provisional	89.24
PRK09126	392	hypothetical protein; Provisional	89.21
PLN02985	514	squalene monooxygenase	89.21
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	89.2
PRK08244	493	hypothetical protein; Provisional	89.19
PRK06198	260	short chain dehydrogenase; Provisional	89.17
PLN02686	367	cinnamoyl-CoA reductase	89.13
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	89.12
PRK06182	273	short chain dehydrogenase; Validated	89.07
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	89.07
PRK05257	494	malate:quinone oxidoreductase; Validated	89.03
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	89.0
PRK08655	437	prephenate dehydrogenase; Provisional	88.98
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	88.95
PRK06545	359	prephenate dehydrogenase; Validated	88.94
PRK09072	263	short chain dehydrogenase; Provisional	88.92
PRK08226	263	short chain dehydrogenase; Provisional	88.92
PRK07454	241	short chain dehydrogenase; Provisional	88.92
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.88
PRK07067	257	sorbitol dehydrogenase; Provisional	88.83
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	88.81
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	88.81
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	88.81
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	88.8
PRK05867	253	short chain dehydrogenase; Provisional	88.8
PRK05993	277	short chain dehydrogenase; Provisional	88.77
PRK08219	227	short chain dehydrogenase; Provisional	88.77
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	88.77
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	88.74
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	88.74
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	88.73
PRK08213	259	gluconate 5-dehydrogenase; Provisional	88.71
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	88.71
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.69
PRK05693	274	short chain dehydrogenase; Provisional	88.69
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	88.69
PRK12770	352	putative glutamate synthase subunit beta; Provisio	88.69
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	88.69
KOG1502|consensus	327		88.67
PRK08300	302	acetaldehyde dehydrogenase; Validated	88.67
PRK06179	270	short chain dehydrogenase; Provisional	88.67
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	88.66
PRK06398	258	aldose dehydrogenase; Validated	88.64
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	88.61
PRK06181	263	short chain dehydrogenase; Provisional	88.6
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	88.59
PRK07453	322	protochlorophyllide oxidoreductase; Validated	88.54
PRK06101	240	short chain dehydrogenase; Provisional	88.53
PRK12831	464	putative oxidoreductase; Provisional	88.52
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	88.51
PLN02712	667	arogenate dehydrogenase	88.49
PRK12937	245	short chain dehydrogenase; Provisional	88.42
PLN02463	447	lycopene beta cyclase	88.41
PTZ00367	567	squalene epoxidase; Provisional	88.39
PRK06949	258	short chain dehydrogenase; Provisional	88.39
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	88.37
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	88.34
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	88.27
PTZ00383	497	malate:quinone oxidoreductase; Provisional	88.25
PRK07578	199	short chain dehydrogenase; Provisional	88.25
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	88.23
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	88.2
PRK07062	265	short chain dehydrogenase; Provisional	88.19
PRK06701	290	short chain dehydrogenase; Provisional	88.18
PRK07201	657	short chain dehydrogenase; Provisional	88.18
PRK05876	275	short chain dehydrogenase; Provisional	88.17
PRK07576	264	short chain dehydrogenase; Provisional	88.16
PRK08265	261	short chain dehydrogenase; Provisional	88.16
PRK05650	270	short chain dehydrogenase; Provisional	88.14
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	88.13
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	88.12
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	88.08
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	88.07
PLN02712	667	arogenate dehydrogenase	88.02
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	88.01
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.95
PRK08628	258	short chain dehydrogenase; Provisional	87.94
PRK06196	315	oxidoreductase; Provisional	87.92
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.89
PRK07074	257	short chain dehydrogenase; Provisional	87.88
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	87.85
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	87.84
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	87.77
PRK13403	335	ketol-acid reductoisomerase; Provisional	87.76
PRK12367	245	short chain dehydrogenase; Provisional	87.73
KOG2336|consensus	422		87.69
PRK06567	1028	putative bifunctional glutamate synthase subunit b	87.61
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	87.58
PRK08263	275	short chain dehydrogenase; Provisional	87.58
KOG2018|consensus	430		87.57
PRK07233	434	hypothetical protein; Provisional	87.52
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	87.51
PRK09897	534	hypothetical protein; Provisional	87.48
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	87.46
PRK12814	652	putative NADPH-dependent glutamate synthase small	87.44
PRK09496	453	trkA potassium transporter peripheral membrane com	87.4
PRK12824	245	acetoacetyl-CoA reductase; Provisional	87.39
PRK07831	262	short chain dehydrogenase; Provisional	87.36
PRK07069	251	short chain dehydrogenase; Validated	87.35
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	87.34
PRK07109	334	short chain dehydrogenase; Provisional	87.31
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	87.26
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	87.16
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	87.15
PRK08589	272	short chain dehydrogenase; Validated	87.12
PRK06483	236	dihydromonapterin reductase; Provisional	87.12
PRK07832	272	short chain dehydrogenase; Provisional	87.08
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	87.08
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	87.05
TIGR01746	367	Thioester-redct thioester reductase domain. It has	87.02
PRK08294	634	phenol 2-monooxygenase; Provisional	87.0
PRK12742	237	oxidoreductase; Provisional	87.0
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	86.99
PRK05872	296	short chain dehydrogenase; Provisional	86.95
PRK08339	263	short chain dehydrogenase; Provisional	86.95
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	86.94
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	86.94
PRK13304	265	L-aspartate dehydrogenase; Reviewed	86.82
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	86.76
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	86.76
COG3349	485	Uncharacterized conserved protein [Function unknow	86.7
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	86.68
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	86.62
PRK06482	276	short chain dehydrogenase; Provisional	86.54
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	86.44
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.42
PRK06114	254	short chain dehydrogenase; Provisional	86.31
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	86.29
PRK09291	257	short chain dehydrogenase; Provisional	86.26
PRK11883	451	protoporphyrinogen oxidase; Reviewed	86.23
PRK06947	248	glucose-1-dehydrogenase; Provisional	86.18
PRK05479	330	ketol-acid reductoisomerase; Provisional	86.12
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	86.11
PRK05865	854	hypothetical protein; Provisional	86.09
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.99
PRK08605	332	D-lactate dehydrogenase; Validated	85.91
PRK07904	253	short chain dehydrogenase; Provisional	85.91
PRK06139	330	short chain dehydrogenase; Provisional	85.9
PTZ00188	506	adrenodoxin reductase; Provisional	85.88
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	85.84
PRK12744	257	short chain dehydrogenase; Provisional	85.82
PLN02268	435	probable polyamine oxidase	85.79
PRK12746	254	short chain dehydrogenase; Provisional	85.79
PRK09134	258	short chain dehydrogenase; Provisional	85.78
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	85.77
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	85.74
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	85.72
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	85.72

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=1.1e-50  Score=368.78  Aligned_cols=211  Identities=70%  Similarity=1.090  Sum_probs=190.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEE-cC---------ch----------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAF-NG---------AD----------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~-~~---------~d----------   93 (248)
                      |||+||||+|+||+++||+|+.+++++||+|+|++.++|++|||+|+.++++++.+ .+         +|          
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999999899999999999999999999999999889999999999866666653 21         11          


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence                                                                                          88


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhc
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQ  175 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~  175 (248)
                      ++++|++|++|||||||||||||+||+++|..+++++++++|.++|+++||+|+++|.|||+|+||+|.++++|+++|++
T Consensus       161 l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aIl~  240 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLR  240 (310)
T ss_pred             hCcCHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHHHH
Confidence            89999999999999998899999999999876777767999999999999999997546899999999999999999997


Q ss_pred             ccCCCCeEEEeeEecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14621        176 GLKGESNVIECAYVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV  245 (248)
Q Consensus       176 ~l~~~~~il~~s~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~  245 (248)
                      ++++++.++|+++++++ | +++|||+||++|++||++++++++|+++|+++|++|++.|++.++.+++|+
T Consensus       241 ~~~~~~~~~~~s~~~~~-g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~~~~~~g~~~~  310 (310)
T cd01337         241 GLKGEKGVIECAYVESD-VTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELKKNIEKGVDFV  310 (310)
T ss_pred             hcCCCcceEEEEEEecc-CCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHHHhhhcccC
Confidence            54467788888888877 7 899999999999999999999923999999999999999999999999884

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=1.5e-50  Score=368.20  Aligned_cols=213  Identities=69%  Similarity=1.048  Sum_probs=190.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcC-c---------h-----------
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNG-A---------D-----------   93 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~-~---------d-----------   93 (248)
                      ||+||||+|+||+++||+|+.+++++||+|+|+++++|++|||+|+.++++++.+++ +         |           
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            899999999999999999999999999999999999999999999986667775321 1         1           


Q ss_pred             -----------------------------------------------------------------------------hhc
Q psy14621         94 -----------------------------------------------------------------------------QLK   96 (248)
Q Consensus        94 -----------------------------------------------------------------------------~~l   96 (248)
                                                                                                   +++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence                                                                                         888


Q ss_pred             CCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhcc
Q psy14621         97 GLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQG  176 (248)
Q Consensus        97 ~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~~  176 (248)
                      +++|++|++||||||+++||||+||+++....++++++++|.++|+++||+|+++|.|||+|+||+|.|+++|+++|+..
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~~  240 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG  240 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHHh
Confidence            99999999999999933499999999984323566668999999999999999975478999999999999999999975


Q ss_pred             cCCCCeEEEeeEecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621        177 LKGESNVIECAYVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK  247 (248)
Q Consensus       177 l~~~~~il~~s~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~  247 (248)
                      ++|++.++|++|++++|| +++|||+||++|++||++++++++||++|+++|++|++.|++.++.+++|++.
T Consensus       241 ~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~~~  312 (312)
T TIGR01772       241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFVAS  312 (312)
T ss_pred             hCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            558999999889999998 89999999999999999999993499999999999999999999999999863

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=2e-50  Score=365.17  Aligned_cols=205  Identities=42%  Similarity=0.607  Sum_probs=184.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC--CeEEEEc-C-------ch--------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK--AHVQAFN-G-------AD--------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~--~~v~~~~-~-------~d--------   93 (248)
                      +||+|||| |+||+++||+|..+++.+||+|||+++  ++|++|||+|+.++  ..++++. +       +|        
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~   79 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGV   79 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCC
Confidence            59999999 999999999999999988999999997  99999999999864  2344333 1       12        


Q ss_pred             -----------------------------------------------------------------------------hhc
Q psy14621         94 -----------------------------------------------------------------------------QLK   96 (248)
Q Consensus        94 -----------------------------------------------------------------------------~~l   96 (248)
                                                                                                   +++
T Consensus        80 prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~~lae~~  159 (313)
T COG0039          80 PRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVLDSARFRTFLAEKL  159 (313)
T ss_pred             CCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHHHhcCCCccceecccchHHHHHHHHHHHHHh
Confidence                                                                                         899


Q ss_pred             CCCCCCeeEeEEeccCCCcccccccCcc----cCCCCC----hHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHH
Q psy14621         97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFP----DDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR  168 (248)
Q Consensus        97 ~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~~----~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~  168 (248)
                      +++|++|++|||||| ||||||+||+++    |+.++.    ++++++|.++||++|++|+++| |.| |+||+|.|+++
T Consensus       160 ~v~~~~V~~~ViGeH-Gdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~A~a~a~  236 (313)
T COG0039         160 GVSPKDVHAYVIGEH-GDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGPAAALAR  236 (313)
T ss_pred             CCChhHceeeEeccC-CCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhHHHHHHH
Confidence            999999999999999 999999999998    765532    3578899999999999999975 444 99999999999


Q ss_pred             HHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14621        169 FAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA  246 (248)
Q Consensus       169 iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~  246 (248)
                      |+++|++   |+++++|+| |++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.||+.++.+.++..
T Consensus       237 ~~~ail~---d~~~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~i~~~~~~~~  312 (313)
T COG0039         237 MVEAILR---DEKRVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKNIELVKELVL  312 (313)
T ss_pred             HHHHHHc---CCCceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999   999999998 9999998 8999999999999999999999 69999999999999999999999987754

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=4.7e-49  Score=359.58  Aligned_cols=213  Identities=57%  Similarity=0.922  Sum_probs=191.7

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcC----------ch------
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNG----------AD------   93 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~----------~d------   93 (248)
                      ..+++||+||||||+||+++||.|+.+++++||+|+|++.++|++|||+|+....++..+++          .|      
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            34677999999999999999999999999999999999559999999999887655654322          11      


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~  164 (321)
T PTZ00325         85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKF  164 (321)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --hhcCCCCCCeeEeEEeccCCC-cccccccCcc-cCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHH
Q psy14621         94 --QLKGLNPTDVNVPVIGGHAGI-TIIPLISQAT-PSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARF  169 (248)
Q Consensus        94 --~~l~v~p~~V~~~ViGeHsGd-s~vp~wS~a~-p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~i  169 (248)
                        ++++++|++|++|||||| || ||||+||++- |   ++++++++|.++|+++||+|+++|.|||+|+||||.++++|
T Consensus       165 la~~l~v~~~~V~~~VlGeH-Gd~s~v~~~S~~g~~---l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i  240 (321)
T PTZ00325        165 VAEALGMNPYDVNVPVVGGH-SGVTIVPLLSQTGLS---LPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEW  240 (321)
T ss_pred             HHHHhCcChhheEEEEEeec-CCcccccchhccCCC---CCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHH
Confidence              889999999999999999 89 8999999993 4   45667999999999999999997645699999999999999


Q ss_pred             HHHHhcccCCCCeEEEeeEecCCCC-CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621        170 AFSLIQGLKGESNVIECAYVKSDVT-EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAVPELKKNIAKGEEFVAK  247 (248)
Q Consensus       170 v~aIl~~l~~~~~il~~s~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~  247 (248)
                      +++|+++++|+++++|++|++++|| +++|||+||++|++|++++++ + +|+++|+++|++|++.|++.+++++.|+++
T Consensus       241 ~~ail~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~l~~S~~~i~~~~~~~~~~~~~  319 (321)
T PTZ00325        241 STSVLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIG-PLNAYEEELLEAAVPDLKKNIEKGLEFARK  319 (321)
T ss_pred             HHHHHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999986557999999999999999 899999999999999999999 8 799999999999999999999999999876

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=4.6e-48  Score=353.33  Aligned_cols=208  Identities=63%  Similarity=1.002  Sum_probs=185.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcCc----------h--------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGA----------D--------   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~~----------d--------   93 (248)
                      .+.||+||||+|+||+++||+|+.+++++||+|+|+++++|++|||+|+.++.++..++++          |        
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            3469999999999999999999999999999999999999999999999887666653221          1        


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA  176 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVA  176 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHH
Confidence                                                                                            


Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSL  173 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aI  173 (248)
                      +++|++|.+|++||+|||+||||||+||+++|..+++++++++|.++|+++|++|+++|.|||+|+||+|.++++|+++|
T Consensus       177 ~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~ii~ai  256 (323)
T PLN00106        177 EKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARFADAC  256 (323)
T ss_pred             HHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHHHHHH
Confidence            88999999999999999955699999999998766777779999999999999999975468999999999999999999


Q ss_pred             hcccCCCCeEEEeeEecCCCCCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14621        174 IQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA  239 (248)
Q Consensus       174 l~~l~~~~~il~~s~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~  239 (248)
                      +.+++|++.++|||+++++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.++
T Consensus       257 l~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~  322 (323)
T PLN00106        257 LRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKASIE  322 (323)
T ss_pred             HhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            996656889999998887763349999999999999999999834999999999999999998765

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=3.4e-48  Score=352.38  Aligned_cols=195  Identities=22%  Similarity=0.374  Sum_probs=175.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC---CCeEEEEcCc-------h---------
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES---KAHVQAFNGA-------D---------   93 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~---~~~v~~~~~~-------d---------   93 (248)
                      ||+|||| |+||+++||+|+.+++++||+|+|+++  ++|++|||+|+.+   +.++++++++       |         
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~~   79 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGPS   79 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCCC
Confidence            8999999 999999999999999999999999988  9999999999764   2245554332       1         


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        80 ~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~R~~~~la~~  159 (307)
T cd05290          80 IDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTARLRRIVADK  159 (307)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHHHHHHHHHHH
Confidence                                                                                          88


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC------ChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHH
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYA  165 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a  165 (248)
                      ++++|++|++|||||| ||||||+||+++    |+.++      ++.++++|.++++++||+|++   +||+|+|++|.+
T Consensus       160 l~v~~~~V~~~ViGeH-Gds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t~~~ia~a  235 (307)
T cd05290         160 YGVDPKNVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWTNAGIAKS  235 (307)
T ss_pred             hCCCcccEEEEEEecC-CCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCeehHHHHHH
Confidence            9999999999999999 999999999997    54332      233588999999999999999   589999999999


Q ss_pred             HHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621        166 GARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI  238 (248)
Q Consensus       166 ~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i  238 (248)
                      +++|+++|+.   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +||++|+++|++|++.|++.+
T Consensus       236 ~~~ii~ail~---d~~~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~~~  306 (307)
T cd05290         236 ASRLIKAILL---DERSILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRETI  306 (307)
T ss_pred             HHHHHHHHHh---CCCeEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHHHh
Confidence            9999999998   999999998 9999998 8999999999999999999999 799999999999999999865

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=3.3e-47  Score=351.10  Aligned_cols=223  Identities=23%  Similarity=0.363  Sum_probs=188.2

Q ss_pred             CCCCChhhhhhhccCcccccccc-ccCCC-cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCcc
Q psy14621          6 SGGIGQPLSLLLKQSPLVDHLSL-YDINN-AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIE   81 (248)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~   81 (248)
                      .|+.+ -|-+..+|.+   +-++ +..++ +||+|||| |+||+++||+|+.+++++||+|+|+++  ++|++|||+|++
T Consensus        12 ~~~~~-~~~~~~~~~~---~~~~~m~~~~~~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~   86 (350)
T PLN02602         12 PGGLD-LSQAFFKPIH---NSSPPSPTRRHTKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA   86 (350)
T ss_pred             cchhh-hhhhhhhccc---ccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhh
Confidence            34444 4555555544   2222 43233 79999998 999999999999999999999999988  899999999997


Q ss_pred             CC---CeEEEEcC------ch-----------------------------------------------------------
Q psy14621         82 SK---AHVQAFNG------AD-----------------------------------------------------------   93 (248)
Q Consensus        82 ~~---~~v~~~~~------~d-----------------------------------------------------------   93 (248)
                      +.   .+|+...+      +|                                                           
T Consensus        87 ~~~~~~~i~~~~dy~~~~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~~k  166 (350)
T PLN02602         87 AFLPRTKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWK  166 (350)
T ss_pred             hcCCCCEEEeCCCHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHH
Confidence            42   34433211      11                                                           


Q ss_pred             --------------------------hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC--------CChHHHH
Q psy14621         94 --------------------------QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS--------FPDDQLK  135 (248)
Q Consensus        94 --------------------------~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~--------~~~~~~~  135 (248)
                                                +++++++++|+++||||| ||+|||+||+++    |+.+        +++++++
T Consensus       167 ~sg~p~~rviG~gt~LDs~R~r~~lA~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~  245 (350)
T PLN02602        167 LSGFPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIVGEH-GDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLE  245 (350)
T ss_pred             HhCCCHHHEEeecchHHHHHHHHHHHHHhCCCccceeeeEEecC-CCceEeeeeeeeECCEEHHHHhhccCCccCHHHHH
Confidence                                      888999999999999999 999999999996    4422        3445688


Q ss_pred             HHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC---CceEEEeeEEEcCCcEE
Q psy14621        136 ALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT---EASYFSTPVHLGKNGIE  211 (248)
Q Consensus       136 ~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg---~~v~~s~Pv~lg~~Gv~  211 (248)
                      ++.++++++|++|++   +||+|+||+|.++++++++|++   |+++++||| +++|+||   +++|||+||++|++||+
T Consensus       246 ~i~~~v~~~g~eIi~---~KG~t~~gia~a~a~ii~ail~---d~~~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~  319 (350)
T PLN02602        246 EIHRAVVDSAYEVIK---LKGYTSWAIGYSVASLVRSLLR---DQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVL  319 (350)
T ss_pred             HHHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHh---cCCCeEEEEEecccccCCCCCCcEEEEEEEEeCCeeE
Confidence            999999999999999   5899999999999999999999   999999999 9999997   58999999999999999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        212 KNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       212 ~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      +++++ +||++|+++|++|++.|++.++.+
T Consensus       320 ~i~~l-~L~~~E~~~l~~sa~~l~~~~~~~  348 (350)
T PLN02602        320 GVVNV-HLTDEEAERLRKSAKTLWEVQSQL  348 (350)
T ss_pred             EEecC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999 799999999999999999988765

>KOG1495|consensus

Probab=100.00  E-value=3e-47  Score=333.44  Aligned_cols=200  Identities=25%  Similarity=0.363  Sum_probs=179.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC---CeEEEE---------------cC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK---AHVQAF---------------NG   91 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~---~~v~~~---------------~~   91 (248)
                      +..||+|+|+ |+||+++|+.+..+++++||+|+|+++  ++|++|||+|+.++   ++|...               .|
T Consensus        19 ~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~S~lvIiTAG   97 (332)
T KOG1495|consen   19 KHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSANSKLVIITAG   97 (332)
T ss_pred             cCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCCCcEEEEecC
Confidence            3679999999 999999999999999999999999999  99999999999742   344332               11


Q ss_pred             c---------h-------------------------------------------------------------------hh
Q psy14621         92 A---------D-------------------------------------------------------------------QL   95 (248)
Q Consensus        92 ~---------d-------------------------------------------------------------------~~   95 (248)
                      .         +                                                                   ++
T Consensus        98 arq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~nRViGsGcnLDsaRFryLi~~~  177 (332)
T KOG1495|consen   98 ARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKNRVIGSGCNLDSARFRYLIGNR  177 (332)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCcccceeccCcCccHHHHHHHHHHH
Confidence            1         0                                                                   89


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcc----cCCC--------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHH
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS--------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMA  163 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~--------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA  163 (248)
                      |+++|+++|++||||| |||.||+||.+.    ++.+        .+++.|+++.++|.+++||||++   ||+|+|++|
T Consensus       178 Lg~~pss~hgwIiGEH-GdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl---KGyTswaIg  253 (332)
T KOG1495|consen  178 LGVHPSSCHGWIIGEH-GDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL---KGYTSWAIG  253 (332)
T ss_pred             hCCCcccceEEEeecc-CCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh---cCchHHHHH
Confidence            9999999999999999 999999999996    3322        45677999999999999999996   899999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      .++++++++|++   |.+++.|++ .++|.||  +++|||+||++|++|+.++++. +|+++|.++|++|++.|.+..+.
T Consensus       254 lsva~l~~ail~---n~~~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kSa~tl~~~q~~  329 (332)
T KOG1495|consen  254 LSVADLAQAILR---NLRRIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKSAKTLLEAQKS  329 (332)
T ss_pred             HHHHHHHHHHHh---CcCceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999   999999999 9999998  6999999999999999999999 69999999999999999986543

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=9.4e-47  Score=341.84  Aligned_cols=190  Identities=30%  Similarity=0.516  Sum_probs=170.6

Q ss_pred             EEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC--CeEEEEcCc-------h-------------
Q psy14621         38 VAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK--AHVQAFNGA-------D-------------   93 (248)
Q Consensus        38 IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~--~~v~~~~~~-------d-------------   93 (248)
                      |||| |+||+++||+|+.+++++||+|+|+++  ++|++|||+|+.+.  .+++++.++       |             
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g   79 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPG   79 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCC
Confidence            6898 999999999999999999999999988  89999999999853  234444332       1             


Q ss_pred             ------------------------------------------------------------------------hhcCCCCC
Q psy14621         94 ------------------------------------------------------------------------QLKGLNPT  101 (248)
Q Consensus        94 ------------------------------------------------------------------------~~l~v~p~  101 (248)
                                                                                              ++++++|+
T Consensus        80 ~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~l~v~~~  159 (299)
T TIGR01771        80 ETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQ  159 (299)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHHHhCcCcC
Confidence                                                                                    88899999


Q ss_pred             CeeEeEEeccCCCcccccccCcc----cCCCC-------ChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHH
Q psy14621        102 DVNVPVIGGHAGITIIPLISQAT----PSVSF-------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFA  170 (248)
Q Consensus       102 ~V~~~ViGeHsGds~vp~wS~a~----p~~~~-------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv  170 (248)
                      +|++|||||| |+||||+||+++    |+.++       ++.++++|.++++++|++|++   +||+|+|++|+++++|+
T Consensus       160 ~V~~~v~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a~a~~~~i  235 (299)
T TIGR01771       160 SVHAYIIGEH-GDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIGMAVARIV  235 (299)
T ss_pred             eEEEEEEecC-CCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHHHHHHHHH
Confidence            9999999999 999999999997    55433       233578999999999999999   58999999999999999


Q ss_pred             HHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy14621        171 FSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKK  236 (248)
Q Consensus       171 ~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~  236 (248)
                      ++|+.   |+++++||| |++++|| +++|||+||+||++|+++++++ +||++|+++|++|++.||+
T Consensus       236 ~ail~---d~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik~  299 (299)
T TIGR01771       236 EAILH---DENRVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLKK  299 (299)
T ss_pred             HHHHc---CCCcEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHhC
Confidence            99999   999999998 9999999 8999999999999999999999 7999999999999999974

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.2e-46  Score=341.20  Aligned_cols=199  Identities=24%  Similarity=0.349  Sum_probs=177.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC---CeEEEEcC------ch-------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK---AHVQAFNG------AD-------   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~---~~v~~~~~------~d-------   93 (248)
                      +.+||+|||| |+||+++||+|+.+++++||+|||+++  ++|++|||+|+.+.   .+|+.+.+      +|       
T Consensus         2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~~~adivvitaG   80 (312)
T cd05293           2 PRNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVTANSKVVIVTAG   80 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHhCCCCEEEECCC
Confidence            4579999998 999999999999999999999999988  89999999999842   24544222      11       


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        81 ~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~~la~~  160 (312)
T cd05293          81 ARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAER  160 (312)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCchHHHHHHHHHHHHH
Confidence                                                                                          88


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC--------ChHHHHHHHHHHhhccceeeeccCCCCchhHHHH
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF--------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMA  163 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~--------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA  163 (248)
                      ++++|++|+++||||| ||||||+||+++    |+.++        +++++++|.++|+++|++|++   +||+|+||+|
T Consensus       161 l~v~~~~v~~~v~GeH-G~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~a  236 (312)
T cd05293         161 LGVAPSSVHGWIIGEH-GDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LKGYTSWAIG  236 (312)
T ss_pred             hCCChhhEEEEEeecC-CCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hcCCchHHHH
Confidence            8999999999999999 999999999997    54332        234588999999999999999   5899999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA  239 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~  239 (248)
                      +++++|+++|+.   |++.++|++ +++++||  +++|||+||++|++|+++++++ +||++|+++|++|++.|++.++
T Consensus       237 ~a~~~ii~ail~---d~~~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~i~~~~~  311 (312)
T cd05293         237 LSVADLVDAILR---NTGRVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSADTLWEVQK  311 (312)
T ss_pred             HHHHHHHHHHHc---CCCeEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999999   899999998 9999998  6999999999999999999999 7999999999999999998765

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=8.3e-46  Score=337.46  Aligned_cols=212  Identities=58%  Similarity=0.922  Sum_probs=184.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHh-CCCcceEEEEecCC-chhhHhhhcCccCCCeEEEE--cC-------ch---------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQ-SPLVDHLSLYDIVH-TPGVAADLSHIESKAHVQAF--NG-------AD---------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~-~~l~~elvLiDi~~-a~g~a~DL~~~~~~~~v~~~--~~-------~d---------   93 (248)
                      |||+||||+|+||+++|+.|.. .++..||+|+|+++ ++|++|||+|......++.+  .+       .|         
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            6999999999999999999966 78889999999988 88999999996422333321  11       01         


Q ss_pred             -------------------------------------------------------------------------------h
Q psy14621         94 -------------------------------------------------------------------------------Q   94 (248)
Q Consensus        94 -------------------------------------------------------------------------------~   94 (248)
                                                                                                     +
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia~  160 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAE  160 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHHH
Confidence                                                                                           8


Q ss_pred             hcCCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHh
Q psy14621         95 LKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLI  174 (248)
Q Consensus        95 ~l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl  174 (248)
                      +++++|++|++||||||++|||||+||++ +-..++++++++|.++|+++||+|+++|.|||+|+||+|.++++|+++|+
T Consensus       161 ~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ai~  239 (312)
T PRK05086        161 LKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV  239 (312)
T ss_pred             HhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHHHH
Confidence            88999999999999999555999999999 32235666799999999999999999765679999999999999999999


Q ss_pred             cccCCCCeEEEeeEecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621        175 QGLKGESNVIECAYVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK  247 (248)
Q Consensus       175 ~~l~~~~~il~~s~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~  247 (248)
                      ++++|+++++|++|++++ | +++|||+||++|++|+++++++++|+++|+++|++|++.|++.++.+++|+++
T Consensus       240 ~~~~~~~~v~~~~~~~~~-g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~~~~  312 (312)
T PRK05086        240 RALQGEQGVVECAYVEGD-GKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_pred             hcCCCCCcEEEEEEEecc-CCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            877689999998888887 7 79999999999999999999984599999999999999999999999999874

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=5e-46  Score=339.31  Aligned_cols=202  Identities=26%  Similarity=0.454  Sum_probs=181.2

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC-CeEEEEcCc-------h-------
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK-AHVQAFNGA-------D-------   93 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~-~~v~~~~~~-------d-------   93 (248)
                      +..+||+|||| |+||+++||+|+.+++++||+|+|+++  ++|++|||+|+.+. .++++++++       |       
T Consensus         4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag   82 (315)
T PRK00066          4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG   82 (315)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence            45579999999 999999999999999999999999988  89999999999742 244444332       1       


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        83 ~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~~k~sg~p~~~viG~gt~LDs~R~~~~la~~  162 (315)
T PRK00066         83 APQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYATWKLSGFPKERVIGSGTSLDSARFRYMLSEK  162 (315)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHHHHHhCCCHHHEeecCchHHHHHHHHHHHHH
Confidence                                                                                          78


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHH
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAY  164 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~  164 (248)
                      ++++|++|+++||||| |+||||+||+++    |+.+       +++++++++.++++++|++|++   +||+|+|++|+
T Consensus       163 l~v~~~~V~~~viGeH-G~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg~t~~~~a~  238 (315)
T PRK00066        163 LDVDPRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKGATYYGIAM  238 (315)
T ss_pred             hCCCcccEEEEEEecC-CCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCCeehHHHHH
Confidence            8999999999999999 999999999997    4422       4556788999999999999999   58999999999


Q ss_pred             HHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        165 AGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       165 a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      ++++++++|+.   |++.++|+| +++++|| +++|||+||++|++||++++++ +||++|+++|++|++.|++.++..
T Consensus       239 ~~~~i~~ail~---~~~~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l~~~~~~~  313 (315)
T PRK00066        239 ALARITKAILN---NENAVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVLKEIMDEA  313 (315)
T ss_pred             HHHHHHHHHHc---CCCeEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999   899999999 9999999 8999999999999999999999 799999999999999999988764

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=7.1e-46  Score=339.13  Aligned_cols=203  Identities=28%  Similarity=0.364  Sum_probs=176.8

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCC--CeEEEEcCc-------
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESK--AHVQAFNGA-------   92 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~~-------   92 (248)
                      +++.||+||||+|+||+++||.|+.+++++     ||+|+|+++    ++|++|||+|++++  .++.++.++       
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~da   80 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDV   80 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCC
Confidence            356899999988999999999999999999     999999964    89999999999842  123333321       


Q ss_pred             h-------------------------------------------------------------------------------
Q psy14621         93 D-------------------------------------------------------------------------------   93 (248)
Q Consensus        93 d-------------------------------------------------------------------------------   93 (248)
                      |                                                                               
T Consensus        81 DvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~t~LDs~  160 (323)
T TIGR01759        81 DAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIASKNAPDIPPKNFSAMTRLDHN  160 (323)
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEeeHHHHH
Confidence            1                                                                               


Q ss_pred             -------hhcCCCCCCee-EeEEeccCCCcccccccCcc----cCCC-CChHH--HHHHHHHHhhccceeeeccCCCCch
Q psy14621         94 -------QLKGLNPTDVN-VPVIGGHAGITIIPLISQAT----PSVS-FPDDQ--LKALTGRIQEAGTEVVKAKAGAGSA  158 (248)
Q Consensus        94 -------~~l~v~p~~V~-~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~--~~~i~~~v~~~g~eIi~~k~gkgst  158 (248)
                             ++++++|++|+ .+||||| ||||||+||+++    |+.+ ++++.  +++|.++++++|++|++   +||+|
T Consensus       161 R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t  236 (323)
T TIGR01759       161 RAKYQLAAKAGVPVSDVKNVIIWGNH-SNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE---ARGAS  236 (323)
T ss_pred             HHHHHHHHHhCcChHHeEEeEEEecC-CCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh---ccCCc
Confidence                   88999999995 5699999 999999999997    5555 33332  78999999999999999   57899


Q ss_pred             hH-HHHHHHHHHHHHHhcccCCC--CeEEEee-EecC-CCC--CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHH
Q psy14621        159 TL-SMAYAGARFAFSLIQGLKGE--SNVIECA-YVKS-DVT--EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAA  230 (248)
Q Consensus       159 ~~-siA~a~~~iv~aIl~~l~~~--~~il~~s-~~~g-~yg--~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~S  230 (248)
                      +| ++|+++++|+++|++   |+  ++++||| |++| +||  +++|||+||++|++|++++++ + +|+++|+++|++|
T Consensus       237 ~~~~~a~a~~~iv~ail~---~~~~~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~~l~~s  312 (323)
T TIGR01759       237 SAASAANAAIDHVRDWVT---GTPEGDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRGKLDAT  312 (323)
T ss_pred             chHHHHHHHHHHHHHHHc---CCCCCcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHH
Confidence            99 477999999999999   87  8899999 9999 897  699999999999999999999 9 6999999999999


Q ss_pred             HHHHHHHHHHH
Q psy14621        231 VPELKKNIAKG  241 (248)
Q Consensus       231 a~~I~~~i~~~  241 (248)
                      ++.|+++++++
T Consensus       313 a~~lk~~~~~~  323 (323)
T TIGR01759       313 EDELLEEKEEA  323 (323)
T ss_pred             HHHHHHHHhcC
Confidence            99999998753

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=4.8e-45  Score=333.38  Aligned_cols=205  Identities=30%  Similarity=0.518  Sum_probs=182.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC----CeEEEEcC------ch------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK----AHVQAFNG------AD------   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~----~~v~~~~~------~d------   93 (248)
                      +.+||+|||| |+||+++|++++..++ .+|+|+|+++  ++|+++|++|+...    .+++.+.+      +|      
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVita   81 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVITA   81 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEECC
Confidence            5679999998 9999999999999998 6799999998  78999999999642    24443222      11      


Q ss_pred             -------------------------------------------------------------------------------h
Q psy14621         94 -------------------------------------------------------------------------------Q   94 (248)
Q Consensus        94 -------------------------------------------------------------------------------~   94 (248)
                                                                                                     +
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~lds~R~~~~la~  161 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAE  161 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHHHHHHHHHHHH
Confidence                                                                                           7


Q ss_pred             hcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHH
Q psy14621         95 LKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAY  164 (248)
Q Consensus        95 ~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~  164 (248)
                      +++++|++|+++|+||| |++|||+||+++    |+.+      +++++++++.++++++|++|++++ |||+|+||+|+
T Consensus       162 ~l~v~~~~v~~~viGeH-g~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t~~~~a~  239 (319)
T PTZ00117        162 KLGVSPGDVSAVVIGGH-GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSAFFAPAA  239 (319)
T ss_pred             HhCCCcccceEEEeecC-CCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCChHHHHHH
Confidence            88999999999999999 999999999996    5432      456678999999999999999976 79999999999


Q ss_pred             HHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        165 AGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       165 a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                      ++++|+++|+.   |+++++|+| |++|+|| +++|||+||++|++||++++++ +|+++|+++|++|++.|++.++++.
T Consensus       240 a~~~~~~ail~---~~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~~~~~~~  315 (319)
T PTZ00117        240 AIVAMIEAYLK---DEKRVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQELTQKAK  315 (319)
T ss_pred             HHHHHHHHHhc---CCCeEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   999999999 9999999 8999999999999999999999 7999999999999999999998876


Q ss_pred             hh
Q psy14621        243 EF  244 (248)
Q Consensus       243 ~~  244 (248)
                      .+
T Consensus       316 ~~  317 (319)
T PTZ00117        316 AL  317 (319)
T ss_pred             Hh
Confidence            54

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=3.3e-45  Score=345.45  Aligned_cols=211  Identities=23%  Similarity=0.236  Sum_probs=183.9

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhC-------CCcceEEEEecCC--chhhHhhhcCccCC--CeEEEEcCch-----
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQS-------PLVDHLSLYDIVH--TPGVAADLSHIESK--AHVQAFNGAD-----   93 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~-------~l~~elvLiDi~~--a~g~a~DL~~~~~~--~~v~~~~~~d-----   93 (248)
                      .++..||+||||+|+||+++||.|+++       ++++||+|+|+++  ++|++|||+|+.++  .+|.+.++++     
T Consensus        97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd  176 (444)
T PLN00112         97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD  176 (444)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc
Confidence            455689999999999999999999999       8888999999999  99999999999843  3555444321     


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus       177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~~~rViGtgT~LDs  256 (444)
T PLN00112        177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDE  256 (444)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCCCcceEEeeccHHH
Confidence                                                                                            


Q ss_pred             --------hhcCCCCCCe-eEeEEeccCCCcccccccCcc----cCCCC-ChHH--HHHHHHHHhhccceeeeccCCCCc
Q psy14621         94 --------QLKGLNPTDV-NVPVIGGHAGITIIPLISQAT----PSVSF-PDDQ--LKALTGRIQEAGTEVVKAKAGAGS  157 (248)
Q Consensus        94 --------~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~----p~~~~-~~~~--~~~i~~~v~~~g~eIi~~k~gkgs  157 (248)
                              ++++|+|++| ++|||||| ||||||+||+++    |+.++ ++.+  +++|.++++++|++|++   +||+
T Consensus       257 aR~r~~LA~~l~V~~~~V~~~~V~GeH-Gdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~---~kG~  332 (444)
T PLN00112        257 NRAKCQLALKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK---KWGR  332 (444)
T ss_pred             HHHHHHHHHHhCcCHHHcccceEEecC-CCceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh---ccCc
Confidence                    8899999999 56999999 999999999997    55443 2222  78999999999999999   5787


Q ss_pred             hhH-HHHHHHHHHHHHHhcccCCCCeEEEee-EecCC-CC--CceEEEeeEEEcCCcEEEEe-cCCCCCHHHHHHHHHHH
Q psy14621        158 ATL-SMAYAGARFAFSLIQGLKGESNVIECA-YVKSD-VT--EASYFSTPVHLGKNGIEKNL-GLGKLSDFEKELVKAAV  231 (248)
Q Consensus       158 t~~-siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~-yg--~~v~~s~Pv~lg~~Gv~~i~-~l~~Ls~~E~~~L~~Sa  231 (248)
                      |+| ++|.++++++++|+.+. |+++++||| |++|+ ||  +++|||+||++|++|+++++ ++ +|+++|+++|++|+
T Consensus       333 t~~~s~a~ai~~~I~ail~~~-d~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~~~l~~Sa  410 (444)
T PLN00112        333 SSAASTAVSIADAIKSLVTPT-PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLRERIKKSE  410 (444)
T ss_pred             hhHHHHHHHHHHHHHHHHcCC-CCCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHHHHHHHHH
Confidence            777 99999999999999321 899999999 99994 98  79999999999999999999 69 69999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q psy14621        232 PELKKNIAKGEEFVA  246 (248)
Q Consensus       232 ~~I~~~i~~~l~~~~  246 (248)
                      ++|+++.+.+..++.
T Consensus       411 ~~L~~e~~~~~~~~~  425 (444)
T PLN00112        411 AELLAEKRCVAHLTG  425 (444)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999877664

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=4e-45  Score=334.57  Aligned_cols=204  Identities=23%  Similarity=0.336  Sum_probs=178.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCC--CeEEEEcCc-------h
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESK--AHVQAFNGA-------D   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~~-------d   93 (248)
                      +++||+||||+|+||+++||.|..+++++     ||+|+|+++    ++|++|||+|++++  .++++++++       |
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD   82 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD   82 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence            56799999988999999999999999999     999999954    79999999999832  234444332       1


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        83 iVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~k~s~g~p~~rViG~t~LDs~R  162 (326)
T PRK05442         83 VALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIAMKNAPDLPAENFTAMTRLDHNR  162 (326)
T ss_pred             EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEeeeHHHHHH
Confidence                                                                                            


Q ss_pred             ------hhcCCCCCCeeEeE-EeccCCCcccccccCcc----cCCCC-ChH--HHHHHHHHHhhccceeeeccCCCCchh
Q psy14621         94 ------QLKGLNPTDVNVPV-IGGHAGITIIPLISQAT----PSVSF-PDD--QLKALTGRIQEAGTEVVKAKAGAGSAT  159 (248)
Q Consensus        94 ------~~l~v~p~~V~~~V-iGeHsGds~vp~wS~a~----p~~~~-~~~--~~~~i~~~v~~~g~eIi~~k~gkgst~  159 (248)
                            ++++++|++|++|+ |||| ||||||+||+++    |+.++ +++  .+++|.++++++|++|++   +||+|+
T Consensus       163 ~r~~la~~l~v~~~~V~~~vV~GeH-G~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t~  238 (326)
T PRK05442        163 ALSQLAAKAGVPVADIKKMTVWGNH-SATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE---ARGASS  238 (326)
T ss_pred             HHHHHHHHhCcChHHeEEeEEEECC-cCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh---CcCCcc
Confidence                  88999999999965 8999 999999999997    66553 333  377899999999999999   589999


Q ss_pred             HHHHHH-HHHHHHHHhcccCC--CCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHH
Q psy14621        160 LSMAYA-GARFAFSLIQGLKG--ESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAVP  232 (248)
Q Consensus       160 ~siA~a-~~~iv~aIl~~l~~--~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa~  232 (248)
                      |++|.+ +++|+++|+.   |  +++++||| +++|+||  +++|||+||++| +|+++++. + +|+++|+++|++|++
T Consensus       239 ~~~a~~~~~~iv~ail~---~~~~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l-~L~~~E~~~l~~s~~  313 (326)
T PRK05442        239 AASAANAAIDHVRDWVL---GTPEGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGL-EIDDFSREKIDATLA  313 (326)
T ss_pred             HHHHHHHHHHHHHHHHh---CCCCCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCC-CCCHHHHHHHHHHHH
Confidence            999999 5999999999   7  78999999 9999998  699999999999 99999965 8 799999999999999


Q ss_pred             HHHHHHHHHhhh
Q psy14621        233 ELKKNIAKGEEF  244 (248)
Q Consensus       233 ~I~~~i~~~l~~  244 (248)
                      .|+++.+.+...
T Consensus       314 ~l~~~~~~~~~~  325 (326)
T PRK05442        314 ELEEERDAVKHL  325 (326)
T ss_pred             HHHHHHHHHHhh
Confidence            999999887653

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=6.5e-45  Score=332.73  Aligned_cols=201  Identities=30%  Similarity=0.523  Sum_probs=178.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD------   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d------   93 (248)
                      +.+||+|||| |+||+++|+.++.+++. +|+|+|+++  ++|+++|+.|+..    +.+|+.+.+      +|      
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~ta   82 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVTA   82 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEECC
Confidence            4579999998 99999999999999984 599999998  8899999999853    234443221      01      


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlgt~lds~R~~  162 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSSRLR  162 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEecCcccHHHHH
Confidence                                                                                            


Q ss_pred             ----hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchh
Q psy14621         94 ----QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSAT  159 (248)
Q Consensus        94 ----~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~  159 (248)
                          ++++++|++|+++|+||| |+||||+||+++    |+.+      ++++++++|.++++++|++|++++ |||+|+
T Consensus       163 ~~la~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-gkg~t~  240 (321)
T PTZ00082        163 TYIAEKLGVNPRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-GTGSAY  240 (321)
T ss_pred             HHHHHHhCCCcccceeeEEecC-CCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-CCCccH
Confidence                788999999999999999 999999999997    5432      456668999999999999999986 789999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy14621        160 LSMAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKN  237 (248)
Q Consensus       160 ~siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~  237 (248)
                      ||||.++++|+++|+.   |+++++||| +++++|| +++|||+||+||++||++++++ +||++|+++|++|++.|++.
T Consensus       241 ~~ia~a~~~i~~ail~---d~~~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~sa~~i~~~  316 (321)
T PTZ00082        241 FAPAAAAIEMAEAYLK---DKKRVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDESIKEVKRL  316 (321)
T ss_pred             HHHHHHHHHHHHHHHc---CCCcEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999   999999999 9999999 8999999999999999999999 79999999999999999987


Q ss_pred             HHH
Q psy14621        238 IAK  240 (248)
Q Consensus       238 i~~  240 (248)
                      ++.
T Consensus       317 ~~~  319 (321)
T PTZ00082        317 EAL  319 (321)
T ss_pred             Hhh
Confidence            653

>KOG1494|consensus

Probab=100.00  E-value=2.3e-44  Score=316.61  Aligned_cols=226  Identities=63%  Similarity=0.964  Sum_probs=213.3

Q ss_pred             cccccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcCch--------
Q psy14621         22 LVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGAD--------   93 (248)
Q Consensus        22 ~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~~d--------   93 (248)
                      .+|.|+....+..||+|.||+|.||+.++++|+++++++||.|||+..+.|.+.||+|+.++..|+.|.+++        
T Consensus        17 ~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~   96 (345)
T KOG1494|consen   17 PKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKG   96 (345)
T ss_pred             CcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcC
Confidence            466799999999999999999999999999999999999999999999999999999999999999988643        


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        97 advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtL  176 (345)
T KOG1494|consen   97 ADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL  176 (345)
T ss_pred             CCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehh
Confidence                                                                                            


Q ss_pred             ----------hhcCCCC-CCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHH
Q psy14621         94 ----------QLKGLNP-TDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSM  162 (248)
Q Consensus        94 ----------~~l~v~p-~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~si  162 (248)
                                +.++++| ++++++|||+|+|.|.+|++|+..|...+++++++.+++|++++|.||+++|+|+||+++|+
T Consensus       177 DvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSM  256 (345)
T KOG1494|consen  177 DVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSM  256 (345)
T ss_pred             hhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhH
Confidence                      7779999 55999999999999999999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCCeEEEeeEecCCCCCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        163 AYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       163 A~a~~~iv~aIl~~l~~~~~il~~s~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                      |+|.++++.+.+++|+++..++.|+|+.....+--||+.|+++|++||+++.++++||++|++.|+.+..+||+.++++.
T Consensus       257 AyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~KGv  336 (345)
T KOG1494|consen  257 AYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIEKGV  336 (345)
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999887744678999999999999999999989999999999999999999999999


Q ss_pred             hhhhc
Q psy14621        243 EFVAK  247 (248)
Q Consensus       243 ~~~~~  247 (248)
                      +|.+.
T Consensus       337 ~F~~~  341 (345)
T KOG1494|consen  337 TFVKS  341 (345)
T ss_pred             HHHhh
Confidence            99874

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.4e-44  Score=326.94  Aligned_cols=200  Identities=29%  Similarity=0.472  Sum_probs=178.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch-------
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD-------   93 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d-------   93 (248)
                      .+||+|||+ |+||+.+|+.++.++++ +++|+|+++  ++|+++|+.|...    ..+++.+.+      +|       
T Consensus         1 ~~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag   78 (305)
T TIGR01763         1 RKKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAG   78 (305)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCC
Confidence            369999999 99999999999999988 799999988  7899999999753    234543222      11       


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        79 ~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~lds~R~~~~la~~  158 (305)
T TIGR01763        79 LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLDSARFRTFIAME  158 (305)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchHHHHHHHHHHHH
Confidence                                                                                          88


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHH
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFA  170 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv  170 (248)
                      ++++|++|++|||||| ||||||+||+++    |+.+ ++++.+++|.++++++|++|+++| |||+|+||+|+++++|+
T Consensus       159 l~v~~~~v~~~v~GeH-g~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a~~~~~i~  236 (305)
T TIGR01763       159 LGVSVQDVTACVLGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPAASVVEMV  236 (305)
T ss_pred             hCcCHHHeeeeEEecC-CCcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHH
Confidence            8999999999999999 999999999997    6544 345558999999999999999986 78999999999999999


Q ss_pred             HHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        171 FSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       171 ~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      ++|+.   |+++++|+| +++++|| +++|||+||++|++||++++++ +|+++|+++|++|++.|++.++.
T Consensus       237 ~ai~~---~~~~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~~~~~  304 (305)
T TIGR01763       237 EAILK---DRKRVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDENCKM  304 (305)
T ss_pred             HHHhC---CCCeEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHhc
Confidence            99999   999999999 9999999 8999999999999999999999 79999999999999999988753

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=4.3e-44  Score=325.56  Aligned_cols=198  Identities=26%  Similarity=0.418  Sum_probs=175.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC-CeEEEEcCc-------h----------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK-AHVQAFNGA-------D----------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~-~~v~~~~~~-------d----------   93 (248)
                      |||+|||+ |.||+++|+.|+.+++++|++|+|+++  ++|+++||+|+.+. .+..+++++       |          
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~~   79 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGANQ   79 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCCC
Confidence            69999999 999999999999999999999999988  88999999998632 111222111       1          


Q ss_pred             ---------------------------------------------------------------------------hhcCC
Q psy14621         94 ---------------------------------------------------------------------------QLKGL   98 (248)
Q Consensus        94 ---------------------------------------------------------------------------~~l~v   98 (248)
                                                                                                 +++++
T Consensus        80 ~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~~~~v  159 (308)
T cd05292          80 KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGV  159 (308)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHeecccchhhHHHHHHHHHHHhCC
Confidence                                                                                       88899


Q ss_pred             CCCCeeEeEEeccCCCcccccccCcc----cCC--------CCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHH
Q psy14621         99 NPTDVNVPVIGGHAGITIIPLISQAT----PSV--------SFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAG  166 (248)
Q Consensus        99 ~p~~V~~~ViGeHsGds~vp~wS~a~----p~~--------~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~  166 (248)
                      +|++|++|||||| ||||||+||+++    |+.        .++++++++|.++++++|++|++   +||+|+|++|+++
T Consensus       160 ~~~~v~~~viGeH-g~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~~~~a~a~  235 (308)
T cd05292         160 DPRSVHAYIIGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATYYAIGLAL  235 (308)
T ss_pred             CccceeceeeccC-CCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccHHHHHHHH
Confidence            9999999999999 999999999997    442        23445688999999999999999   5799999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        167 ARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       167 ~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      ++|+++|+.   |+++++||| +++++|| +++|||+||+||++||++++++ +||++|+++|++|++.|++.++.
T Consensus       236 ~~i~~ail~---~~~~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~~~~~  307 (308)
T cd05292         236 ARIVEAILR---DENSVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKEAIES  307 (308)
T ss_pred             HHHHHHHHc---CCCcEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence            999999999   999999998 9999999 8999999999999999999999 79999999999999999988763

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=2.5e-44  Score=334.80  Aligned_cols=211  Identities=24%  Similarity=0.266  Sum_probs=181.4

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEE--ecCC--chhhHhhhcCccCC--CeEEEEcCc-----
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLY--DIVH--TPGVAADLSHIESK--AHVQAFNGA-----   92 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLi--Di~~--a~g~a~DL~~~~~~--~~v~~~~~~-----   92 (248)
                      .++++.||+||||+|+||+++||.|+.+++++     +|+|+  |+++  ++|++|||+|++++  .++.+++++     
T Consensus        40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~k  119 (387)
T TIGR01757        40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFE  119 (387)
T ss_pred             cCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhC
Confidence            44456899999999999999999999999999     56666  7777  99999999999832  355544432     


Q ss_pred             --h-----------------------------------------------------------------------------
Q psy14621         93 --D-----------------------------------------------------------------------------   93 (248)
Q Consensus        93 --d-----------------------------------------------------------------------------   93 (248)
                        |                                                                             
T Consensus       120 daDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~sg~~~~rviG~gT~LD  199 (387)
T TIGR01757       120 DADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNAPNIPRKNFHALTRLD  199 (387)
T ss_pred             CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHcCCCcccEEEecchhH
Confidence              1                                                                             


Q ss_pred             ---------hhcCCCCCCe-eEeEEeccCCCcccccccCcc----cCCCC-ChH--HHHHHHHHHhhccceeeeccCCCC
Q psy14621         94 ---------QLKGLNPTDV-NVPVIGGHAGITIIPLISQAT----PSVSF-PDD--QLKALTGRIQEAGTEVVKAKAGAG  156 (248)
Q Consensus        94 ---------~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~----p~~~~-~~~--~~~~i~~~v~~~g~eIi~~k~gkg  156 (248)
                               ++++++|++| ++|||||| ||||||+||+++    |+.++ ++.  .+++|.++++++|++|++   +||
T Consensus       200 saR~r~~LA~~l~v~~~~V~~~~V~GeH-Gds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~---~KG  275 (387)
T TIGR01757       200 ENRAKCQLALKSGKFYTSVSNVTIWGNH-STTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIK---KWG  275 (387)
T ss_pred             HHHHHHHHHHHHCcChhHcceeEEEecC-CCcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHh---ccC
Confidence                     8899999999 59999999 999999999997    66553 222  378999999999999999   577


Q ss_pred             chhH-HHHHHHHHHHHHHhcccCCCCeEEEee-EecCC-CC--CceEEEeeEEEcCCcEEEEe-cCCCCCHHHHHHHHHH
Q psy14621        157 SATL-SMAYAGARFAFSLIQGLKGESNVIECA-YVKSD-VT--EASYFSTPVHLGKNGIEKNL-GLGKLSDFEKELVKAA  230 (248)
Q Consensus       157 st~~-siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~-yg--~~v~~s~Pv~lg~~Gv~~i~-~l~~Ls~~E~~~L~~S  230 (248)
                      +|+| ++|.++++++++|+.|. |+++++|+| +++|+ ||  +++|||+||++|++|+++++ ++ +|+++|+++|++|
T Consensus       276 ~t~~~s~a~ai~~~i~ai~~g~-d~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~E~~~l~~S  353 (387)
T TIGR01757       276 RSSAASTAVSIADAIKSLVVPT-PEGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDFLRERIRKS  353 (387)
T ss_pred             chhHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHHHHHHHHHH
Confidence            7777 99999999999999321 889999999 99996 98  79999999999999999996 99 6999999999999


Q ss_pred             HHHHHHHHHHHhhhh
Q psy14621        231 VPELKKNIAKGEEFV  245 (248)
Q Consensus       231 a~~I~~~i~~~l~~~  245 (248)
                      ++.|+++.+.+++.+
T Consensus       354 a~~L~~e~~~~~~~~  368 (387)
T TIGR01757       354 EDELLKEKECVAHLI  368 (387)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999998765

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=9.6e-44  Score=325.10  Aligned_cols=202  Identities=25%  Similarity=0.355  Sum_probs=177.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCC--CeEEEEcCc-------h-
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESK--AHVQAFNGA-------D-   93 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~~-------d-   93 (248)
                      ++||+||||+|+||+++||.|+++++++     ||+|+|+++    ++|++|||+|++++  .++.+++++       | 
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi   81 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW   81 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence            5799999988999999999999999999     999999954    79999999999842  234444332       1 


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~t~LDs~Rl  161 (322)
T cd01338          82 ALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMTRLDHNRA  161 (322)
T ss_pred             EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEehHHHHHHH
Confidence                                                                                            


Q ss_pred             -----hhcCCCCCCeeEe-EEeccCCCcccccccCcc----cCCC-CChH--HHHHHHHHHhhccceeeeccCCCCchhH
Q psy14621         94 -----QLKGLNPTDVNVP-VIGGHAGITIIPLISQAT----PSVS-FPDD--QLKALTGRIQEAGTEVVKAKAGAGSATL  160 (248)
Q Consensus        94 -----~~l~v~p~~V~~~-ViGeHsGds~vp~wS~a~----p~~~-~~~~--~~~~i~~~v~~~g~eIi~~k~gkgst~~  160 (248)
                           +++++++++|++| ||||| |++|||+||+++    |+.+ +.+.  .+++|.++++++|++|++   +||+|+|
T Consensus       162 ~~~la~~lgv~~~~v~~~~V~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kG~t~~  237 (322)
T cd01338         162 KSQLAKKAGVPVTDVKNMVIWGNH-SPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK---ARGASSA  237 (322)
T ss_pred             HHHHHHHhCcChhHeEEEEEEeCC-cccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh---CcCCccH
Confidence                 8889999999985 58999 899999999997    5544 3443  378999999999999999   5899999


Q ss_pred             HHH-HHHHHHHHHHhcccCCC--CeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q psy14621        161 SMA-YAGARFAFSLIQGLKGE--SNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPEL  234 (248)
Q Consensus       161 siA-~a~~~iv~aIl~~l~~~--~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I  234 (248)
                      ++| +++++|+++|+.   |+  ++++||| +++|+||  +++|||+||++|++||++++++ +||++|+++|++|++.|
T Consensus       238 ~~~a~a~~~iv~ail~---~~~~~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~l  313 (322)
T cd01338         238 ASAANAAIDHMRDWVL---GTPEGDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKIDATLAEL  313 (322)
T ss_pred             HHHHHHHHHHHHHHhc---CCCCCeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHHHHHHHH
Confidence            999 599999999999   77  5999999 9999998  6999999999999999999999 69999999999999999


Q ss_pred             HHHHHHHh
Q psy14621        235 KKNIAKGE  242 (248)
Q Consensus       235 ~~~i~~~l  242 (248)
                      +++.+++.
T Consensus       314 ~~~~~~~~  321 (322)
T cd01338         314 LEEREAVK  321 (322)
T ss_pred             HHHHHHhh
Confidence            99987753

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=2.5e-43  Score=320.13  Aligned_cols=197  Identities=27%  Similarity=0.463  Sum_probs=175.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC--CeEEEEcCc-------h---------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK--AHVQAFNGA-------D---------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~--~~v~~~~~~-------d---------   93 (248)
                      +||+|||+ |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+.+.  ..+.++.++       |         
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence            49999998 999999999999999999999999988  89999999998642  222222211       1         


Q ss_pred             ----------------------------------------------------------------------------hhcC
Q psy14621         94 ----------------------------------------------------------------------------QLKG   97 (248)
Q Consensus        94 ----------------------------------------------------------------------------~~l~   97 (248)
                                                                                                  ++++
T Consensus        80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~~la~~l~  159 (306)
T cd05291          80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLN  159 (306)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHhCcCHHHEeeccchHHHHHHHHHHHHHHC
Confidence                                                                                        8889


Q ss_pred             CCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHH
Q psy14621         98 LNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGA  167 (248)
Q Consensus        98 v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~  167 (248)
                      ++|++|++|||||| |+||||+||+++    |+.+      +.+++++++.++++++|++|++   +||+|+|++|.|++
T Consensus       160 v~~~~v~~~V~G~H-g~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~~~a~a~~  235 (306)
T cd05291         160 VDPRSVHAYVLGEH-GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYYGIATALA  235 (306)
T ss_pred             CCcccceEEEEecC-CCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHHHHHHHHH
Confidence            99999999999999 999999999997    5432      3355689999999999999999   58999999999999


Q ss_pred             HHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14621        168 RFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA  239 (248)
Q Consensus       168 ~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~  239 (248)
                      +++++|+.   |+++++|+| +++++|| +++|||+||++|++||++++++ +|+++|+++|++|+++|++.++
T Consensus       236 ~~~~ail~---~~~~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~~~~  305 (306)
T cd05291         236 RIVKAILN---DENAILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKENIK  305 (306)
T ss_pred             HHHHHHHc---CCCEEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999   999999999 9999999 8999999999999999999999 7999999999999999998765

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=2.1e-43  Score=320.05  Aligned_cols=194  Identities=25%  Similarity=0.381  Sum_probs=173.9

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC---CeEEEEcC------ch-----------
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK---AHVQAFNG------AD-----------   93 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~---~~v~~~~~------~d-----------   93 (248)
                      |+|||+ |+||+++|++|+.+++++||+|+|+++  ++|+++||+|+.++   .++....+      +|           
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCC
Confidence            689999 999999999999999999999999988  89999999999864   23332111      11           


Q ss_pred             --------------------------------------------------------------------------hhcCCC
Q psy14621         94 --------------------------------------------------------------------------QLKGLN   99 (248)
Q Consensus        94 --------------------------------------------------------------------------~~l~v~   99 (248)
                                                                                                ++++++
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la~~l~v~  159 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVD  159 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHHHHhCCC
Confidence                                                                                      788999


Q ss_pred             CCCeeEeEEeccCCCcccccccCcc----cCCCC---ChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHH
Q psy14621        100 PTDVNVPVIGGHAGITIIPLISQAT----PSVSF---PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFS  172 (248)
Q Consensus       100 p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~---~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~a  172 (248)
                      |++|+++|+||| |++|||+||+++    |+.++   +++.+++|.+++++++++|++   +||+|+|++|.++++++++
T Consensus       160 ~~~v~~~viGeH-g~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~~~~~~a  235 (300)
T cd00300         160 PQSVHAYVLGEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAIADIVKS  235 (300)
T ss_pred             cccEEEEEEecc-CCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHHHHHHHH
Confidence            999999999999 999999999997    65442   345688999999999999999   5899999999999999999


Q ss_pred             HhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621        173 LIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI  238 (248)
Q Consensus       173 Il~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i  238 (248)
                      |+.   |+++++|+| +++++|| +++|||+||++|++|+++++++ +||++|+++|++|++.|++.+
T Consensus       236 i~~---~~~~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~~  299 (300)
T cd00300         236 ILL---DERRVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEVL  299 (300)
T ss_pred             HHc---CCCeEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence            999   899999999 9999999 8999999999999999999999 799999999999999999765

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=2.7e-43  Score=322.27  Aligned_cols=200  Identities=26%  Similarity=0.346  Sum_probs=174.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcce-----EEEEecCC----chhhHhhhcCccCC--CeEEEEcCc-------h---
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDH-----LSLYDIVH----TPGVAADLSHIESK--AHVQAFNGA-------D---   93 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~e-----lvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~~-------d---   93 (248)
                      ||+||||+|+||+++|+.|+++++++|     |+|+|+++    ++|+++||+|++++  ..+.++.+.       |   
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            899999999999999999999999995     99999985    89999999999632  112222111       1   


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~vig~t~LDs~R~r~  161 (323)
T cd00704          82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIALKNAPNLPPKNFTALTRLDHNRAKA  161 (323)
T ss_pred             EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEeeHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ---hhcCCCCCCe-eEeEEeccCCCcccccccCcc----cCCC-----CChH-HHHHHHHHHhhccceeeeccCCCCchh
Q psy14621         94 ---QLKGLNPTDV-NVPVIGGHAGITIIPLISQAT----PSVS-----FPDD-QLKALTGRIQEAGTEVVKAKAGAGSAT  159 (248)
Q Consensus        94 ---~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~----p~~~-----~~~~-~~~~i~~~v~~~g~eIi~~k~gkgst~  159 (248)
                         ++++++|++| +++||||| |++|||+||+++    |+.+     ++++ ..++|.+++++++++|++   +||+|+
T Consensus       162 ~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~---~kg~t~  237 (323)
T cd00704         162 QVARKLGVRVSDVKNVIIWGNH-SNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK---KRGASS  237 (323)
T ss_pred             HHHHHhCcCHHHceeeeEEecc-cCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh---ccCcch
Confidence               8899999999 56999999 999999999997    5433     3333 377899999999999999   578999


Q ss_pred             HH-HHHHHHHHHHHHhcccCCCC--eEEEee-EecCCC-C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHH
Q psy14621        160 LS-MAYAGARFAFSLIQGLKGES--NVIECA-YVKSDV-T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVP  232 (248)
Q Consensus       160 ~s-iA~a~~~iv~aIl~~l~~~~--~il~~s-~~~g~y-g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~  232 (248)
                      |+ +|+++++|+++|++   |++  +++||| |++|+| |  +++|||+||++|++||++++++ +|+++|+++|++|++
T Consensus       238 ~~~~a~a~~~iv~ail~---~~~~~~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~  313 (323)
T cd00704         238 AASAAKAIADHVKDWLF---GTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREKLKATEE  313 (323)
T ss_pred             hHHHHHHHHHHHHHHHh---CCCCCcEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHHHHHHHH
Confidence            97 69999999999999   888  999998 999999 8  6899999999999999999999 699999999999999


Q ss_pred             HHHHHHHHHh
Q psy14621        233 ELKKNIAKGE  242 (248)
Q Consensus       233 ~I~~~i~~~l  242 (248)
                      .|+++.+.++
T Consensus       314 ~l~~~~~~~~  323 (323)
T cd00704         314 ELIEEKEIAL  323 (323)
T ss_pred             HHHHHHHhhC
Confidence            9999998774

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=5.3e-43  Score=320.64  Aligned_cols=203  Identities=26%  Similarity=0.315  Sum_probs=174.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCC--CeEEEEcC-------ch-
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESK--AHVQAFNG-------AD-   93 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~-------~d-   93 (248)
                      +.||+||||+|+||+++++.|+.+++++     ||+|+|+++    ++|+++||.|++++  .++....+       .| 
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDi   81 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDV   81 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCE
Confidence            4699999999999999999999999986     999999965    78999999998631  12221111       11 


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        82 VI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~~~~~~~~~ig~gt~LDs~R~  161 (325)
T cd01336          82 AILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALILLKYAPSIPKENFTALTRLDHNRA  161 (325)
T ss_pred             EEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHHHHcCCCCHHHEEeeehHHHHHH
Confidence                                                                                            


Q ss_pred             -----hhcCCCCCCeeE-eEEeccCCCcccccccCccc--------CCCC-ChH--HHHHHHHHHhhccceeeeccCCCC
Q psy14621         94 -----QLKGLNPTDVNV-PVIGGHAGITIIPLISQATP--------SVSF-PDD--QLKALTGRIQEAGTEVVKAKAGAG  156 (248)
Q Consensus        94 -----~~l~v~p~~V~~-~ViGeHsGds~vp~wS~a~p--------~~~~-~~~--~~~~i~~~v~~~g~eIi~~k~gkg  156 (248)
                           ++++++|++|+. +||||| |+||||+||+++.        +.++ +++  .+++|.++++++|++|++++  ||
T Consensus       162 r~~la~~l~v~~~~v~~~~V~GeH-G~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~~--~g  238 (325)
T cd01336         162 KSQIALKLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVIKAR--KL  238 (325)
T ss_pred             HHHHHHHhCcChhhceEeEEEEcC-CCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHHHcc--cc
Confidence                 889999999975 599999 9999999999863        3332 222  26899999999999999963  78


Q ss_pred             chhHHHHHHHHHHHHHHhcccCCC--CeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHH
Q psy14621        157 SATLSMAYAGARFAFSLIQGLKGE--SNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAV  231 (248)
Q Consensus       157 st~~siA~a~~~iv~aIl~~l~~~--~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa  231 (248)
                      +|+||+|.++++++++|+.   |+  ++++||| +++|+||  +++|||+||++|++||++++++ +||++|+++|++|+
T Consensus       239 ~t~~~~a~~~~~i~~ail~---~~~~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~  314 (325)
T cd01336         239 SSAMSAAKAICDHVHDWWF---GTPEGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSREKIDATA  314 (325)
T ss_pred             chHHHHHHHHHHHHHHHHc---CCCCCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHH
Confidence            9999999999999999999   74  8999999 9999998  6999999999999999999999 69999999999999


Q ss_pred             HHHHHHHHHHh
Q psy14621        232 PELKKNIAKGE  242 (248)
Q Consensus       232 ~~I~~~i~~~l  242 (248)
                      +.|+++++.++
T Consensus       315 ~~l~~e~~~~~  325 (325)
T cd01336         315 KELVEEKETAL  325 (325)
T ss_pred             HHHHHHHHhhC
Confidence            99999998764

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.7e-42  Score=315.83  Aligned_cols=203  Identities=24%  Similarity=0.320  Sum_probs=172.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCC--CeEEEEcC-------ch---
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESK--AHVQAFNG-------AD---   93 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~-------~d---   93 (248)
                      ||+||||+|+||+++|+.|+.+++++     ||+|+|+++    ++|++|||+|++++  .++...++       .|   
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            69999999999999999999999996     799999954    78999999999832  22221111       01   


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~~~sg~~~~~vig~gt~LDs~R~r~  160 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLSNYAPSIPPKNFSALTRLDHNRALA  160 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHHHHcCCCCcceEEEeeehHHHHHHH
Confidence                                                                                            


Q ss_pred             ---hhcCCCCCCee-EeEEeccCCCcccccccCcccC--------CC-CChH--HHHHHHHHHhhccceeeeccCCCCch
Q psy14621         94 ---QLKGLNPTDVN-VPVIGGHAGITIIPLISQATPS--------VS-FPDD--QLKALTGRIQEAGTEVVKAKAGAGSA  158 (248)
Q Consensus        94 ---~~l~v~p~~V~-~~ViGeHsGds~vp~wS~a~p~--------~~-~~~~--~~~~i~~~v~~~g~eIi~~k~gkgst  158 (248)
                         ++++++|++|+ +|||||| |+||||+||+++.-        .+ ++++  ++++|.++++++|++|+++|  +|+|
T Consensus       161 ~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k--~~~t  237 (324)
T TIGR01758       161 QVAERAGVPVSDVKNVIIWGNH-SSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR--KLSS  237 (324)
T ss_pred             HHHHHhCCChhhceEeEEEECC-CCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc--CCCH
Confidence               89999999996 6999999 99999999999633        22 2222  26889999999999999963  5699


Q ss_pred             hHHHHHHHHHHHHHHhcccCCCCeEEEee-EecCC-CC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q psy14621        159 TLSMAYAGARFAFSLIQGLKGESNVIECA-YVKSD-VT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPEL  234 (248)
Q Consensus       159 ~~siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~-yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I  234 (248)
                      +|++|.++++++++|+.+. |+++++||| +++|+ ||  +++|||+||++|++|++.+.++ +|+++|+++|++|++.|
T Consensus       238 ~~~ia~~~~~i~~ai~~~~-~~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l~~s~~~l  315 (324)
T TIGR01758       238 ALSAAKAAVDQMHDWVLGT-PEGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKLALTAKEL  315 (324)
T ss_pred             HHHHHHHHHHHHHHHhcCC-CCCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999321 889999999 99999 98  6999999999998888888789 69999999999999999


Q ss_pred             HHHHHHHh
Q psy14621        235 KKNIAKGE  242 (248)
Q Consensus       235 ~~~i~~~l  242 (248)
                      ++.++.++
T Consensus       316 k~~~~~~~  323 (324)
T TIGR01758       316 EEERDEAL  323 (324)
T ss_pred             HHHHHHhh
Confidence            99998874

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=6.1e-41  Score=303.46  Aligned_cols=195  Identities=32%  Similarity=0.527  Sum_probs=174.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch----------
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD----------   93 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d----------   93 (248)
                      |+|||| |+||+.+|+.|+.++++ |++|+|+++  ++|+++|+.|...    ..+++.+.+      +|          
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~p~   78 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGIPR   78 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCCCC
Confidence            689999 99999999999999998 999999998  7899999999753    224443222      11          


Q ss_pred             ---------------------------------------------------------------------------hhcCC
Q psy14621         94 ---------------------------------------------------------------------------QLKGL   98 (248)
Q Consensus        94 ---------------------------------------------------------------------------~~l~v   98 (248)
                                                                                                 +++++
T Consensus        79 ~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlgt~lds~r~~~~la~~l~v  158 (300)
T cd01339          79 KPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGV  158 (300)
T ss_pred             CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEecchHHHHHHHHHHHHHhCC
Confidence                                                                                       78899


Q ss_pred             CCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHH
Q psy14621         99 NPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSL  173 (248)
Q Consensus        99 ~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aI  173 (248)
                      +|++|+++|+||| |++|||+||+++    |+.+ ++++.++++.+++++++++|++.| |||+|+|++|.++++|+++|
T Consensus       159 ~~~~v~~~v~G~h-g~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~~i~~ai  236 (300)
T cd01339         159 SVKDVQAMVLGGH-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIAEMVEAI  236 (300)
T ss_pred             CccceEEEEEeCC-CCcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHHHHHHHH
Confidence            9999999999999 999999999997    5544 445568999999999999999986 67999999999999999999


Q ss_pred             hcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621        174 IQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI  238 (248)
Q Consensus       174 l~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i  238 (248)
                      +.   |++.++|+| +++++|| +++|||+||++|++||++++++ +||++|+++|++|++.|++.+
T Consensus       237 l~---~~~~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~~~  299 (300)
T cd01339         237 LK---DKKRVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKELI  299 (300)
T ss_pred             Hc---CCCcEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHh
Confidence            99   999999999 9999999 8999999999999999999999 799999999999999999865

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=1.6e-40  Score=302.33  Aligned_cols=199  Identities=25%  Similarity=0.439  Sum_probs=174.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC----chhhHhhhcCccC--C--CeEEEEcC------ch------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH----TPGVAADLSHIES--K--AHVQAFNG------AD------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~----a~g~a~DL~~~~~--~--~~v~~~~~------~d------   93 (248)
                      |||+||||+|+||+++|+.|+.+++++||+|+|+++    ++|+++||+|+..  +  .++...++      .|      
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViita   80 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITA   80 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEec
Confidence            699999988999999999999999999999999954    7999999999743  2  23332211      11      


Q ss_pred             -------------------------------------------------------------------------------h
Q psy14621         94 -------------------------------------------------------------------------------Q   94 (248)
Q Consensus        94 -------------------------------------------------------------------------------~   94 (248)
                                                                                                     +
T Consensus        81 g~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g~~~~~viG~gt~LDs~R~~~~la~  160 (309)
T cd05294          81 GVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLDSLRFKVAIAK  160 (309)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCCHHHEeeccchHHHHHHHHHHHH
Confidence                                                                                           8


Q ss_pred             hcCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC---ChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHH
Q psy14621         95 LKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF---PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGA  167 (248)
Q Consensus        95 ~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~---~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~  167 (248)
                      +++++|++|+++|+||| ||||||+||+++    |+.++   .++.+++|.++++++|++|++   +||+|+||+|.+++
T Consensus       161 ~l~v~~~~v~~~viGeH-g~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~---~kg~t~~~~a~~~~  236 (309)
T cd05294         161 HFNVHISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIIS---LKGGSEYGPASAIS  236 (309)
T ss_pred             HHCcChHHeEEEEEecC-CCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---hcCCchhhHHHHHH
Confidence            88999999999999999 999999999997    55332   245688999999999999999   47889999999999


Q ss_pred             HHHHHHhcccCCCCeEEEee-EecCCC-C-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        168 RFAFSLIQGLKGESNVIECA-YVKSDV-T-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       168 ~iv~aIl~~l~~~~~il~~s-~~~g~y-g-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      +++++|+.   |++.++|++ +.+|+| + +++|+|+||++|++||++++++ +||++|+++|++|++.|++.++.
T Consensus       237 ~ii~ail~---~~~~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~~~~~  308 (309)
T cd05294         237 NLVRTIAN---DERRILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKKYTRE  308 (309)
T ss_pred             HHHHHHHC---CCCeEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHHHHhc
Confidence            99999999   999999998 899998 6 7999999999999999999999 69999999999999999987653

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=1e-39  Score=295.76  Aligned_cols=201  Identities=30%  Similarity=0.507  Sum_probs=178.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC----CeEEEEcC------ch-------
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK----AHVQAFNG------AD-------   93 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~----~~v~~~~~------~d-------   93 (248)
                      ++||+|||| |+||+++|+.++..++. |++|+|+++  ++|+++|++|....    .+++.+.+      +|       
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~~   79 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITAG   79 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECCC
Confidence            479999999 99999999999999988 999999988  88999999998531    24432221      11       


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        80 ~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~lds~r~~~~la~~  159 (307)
T PRK06223         80 VPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLDSARFRTFIAEE  159 (307)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcHHHHHHHHHHHH
Confidence                                                                                          88


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHH
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFA  170 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv  170 (248)
                      ++++|++|+++|+||| |++++|+||+++    |+.+ ++++.+++|.+++++++++|++.+ +||+++|++|.++++++
T Consensus       160 l~v~~~~v~~~viGeh-g~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~~~~~ii  237 (307)
T PRK06223        160 LNVSVKDVTAFVLGGH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAASIAEMV  237 (307)
T ss_pred             hCcChhhCcccEEcCC-CCcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHHHHHHHH
Confidence            8999999999999999 999999999996    5544 555668999999999999999974 58999999999999999


Q ss_pred             HHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        171 FSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       171 ~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      ++|+.   |++.++|++ +++|+|| +++|||+||++|++||++++++ +||++|+++|++|++.|++.++..
T Consensus       238 ~ail~---~~~~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  306 (307)
T PRK06223        238 EAILK---DKKRVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKKLIEAL  306 (307)
T ss_pred             HHHHc---CCCcEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHhc
Confidence            99999   899999998 9999999 8999999999999999999999 799999999999999999988753

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=1.7e-38  Score=300.03  Aligned_cols=201  Identities=18%  Similarity=0.188  Sum_probs=172.7

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecC--C--chhhHhhhcCccCC--CeEEEEcCc-------
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIV--H--TPGVAADLSHIESK--AHVQAFNGA-------   92 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~--~--a~g~a~DL~~~~~~--~~v~~~~~~-------   92 (248)
                      .++.+|+|.||||++|+++.|.++...++.     .|+|+|++  +  ++|++|||+|++++  .++.+++++       
T Consensus       121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~da  200 (452)
T cd05295         121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDA  200 (452)
T ss_pred             CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCC
Confidence            346799999999999999999999987775     59999994  4  89999999999853  235554432       


Q ss_pred             h-------------------------------------------------------------------------------
Q psy14621         93 D-------------------------------------------------------------------------------   93 (248)
Q Consensus        93 d-------------------------------------------------------------------------------   93 (248)
                      |                                                                               
T Consensus       201 DvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~~k~apgiP~~rVig~gtlds  280 (452)
T cd05295         201 HVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSILIKYAPSIPRKNIIAVARLQE  280 (452)
T ss_pred             CEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHHHHHcCCCCHHHEEEecchHH
Confidence            1                                                                               


Q ss_pred             --------hhcCCCCCCe-eEeEEeccCCCcccccccCcc----------------cCCC-CChHH--HHHHHHHHhhcc
Q psy14621         94 --------QLKGLNPTDV-NVPVIGGHAGITIIPLISQAT----------------PSVS-FPDDQ--LKALTGRIQEAG  145 (248)
Q Consensus        94 --------~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~----------------p~~~-~~~~~--~~~i~~~v~~~g  145 (248)
                              ++++|+|++| +++||||| |+||||+||+++                |+.+ +.++.  .+++.+.+++++
T Consensus       281 ~R~r~~LA~kl~V~~~~V~~~~VwGeH-G~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~~v~~rg  359 (452)
T cd05295         281 NRAKALLARKLNVNSAGIKDVIVWGNI-GGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVATLKSLS  359 (452)
T ss_pred             HHHHHHHHHHhCcCHHHceeeEEEEcc-CCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHHHHHHHH
Confidence                    8999999999 67999999 999999999995                2222 22222  567899999999


Q ss_pred             ceeeeccCCCCchhHHHHHHHHHHHHHHhcccCCC--CeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCC
Q psy14621        146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGE--SNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLS  220 (248)
Q Consensus       146 ~eIi~~k~gkgst~~siA~a~~~iv~aIl~~l~~~--~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls  220 (248)
                      +   +   +||+|+||+|.|+++++++|+.   |+  ++++||| +++|+||  +++|||+||++|++||+.+++| +|+
T Consensus       360 ~---~---rkgsT~~siA~A~~~iv~ail~---~t~~~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L-~L~  429 (452)
T cd05295         360 S---S---LNHEAAISPAHAIATTLSYWYH---GSPPGEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDL-ELS  429 (452)
T ss_pred             H---h---ccCChHHHHHHHHHHHHHHHHh---CCCCCeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCC-CCC
Confidence            8   3   5899999999999999999999   76  5899999 9999998  7999999999999999999999 699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q psy14621        221 DFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       221 ~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                      ++|+++|++|+++|.++.+.++
T Consensus       430 e~E~~kL~~S~~eL~~E~~~~~  451 (452)
T cd05295         430 EILREVLKRITSDLIQEKLVAL  451 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999987763

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=6.8e-37  Score=278.29  Aligned_cols=147  Identities=24%  Similarity=0.306  Sum_probs=131.4

Q ss_pred             hhcCCCCCCe-eEeEEeccCCCcccccccCccc--------CCCC-ChHH--HHHHHHHHhhccceeeeccCCCCchhHH
Q psy14621         94 QLKGLNPTDV-NVPVIGGHAGITIIPLISQATP--------SVSF-PDDQ--LKALTGRIQEAGTEVVKAKAGAGSATLS  161 (248)
Q Consensus        94 ~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~p--------~~~~-~~~~--~~~i~~~v~~~g~eIi~~k~gkgst~~s  161 (248)
                      ++++++|++| ++|||||| |+||||+||+++.        +.++ .+++  +++|.++++++|++|+++  +||+|+||
T Consensus       147 ~~l~v~~~~V~~~~VlGeH-G~s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~--~kg~t~~~  223 (309)
T PLN00135        147 ERLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKA--RKLSSALS  223 (309)
T ss_pred             HHhCcChhhceeeEEEEcC-CCceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHc--cCccHHHH
Confidence            8999999999 79999999 9999999999964        3332 3333  788999999999999996  37899999


Q ss_pred             HHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621        162 MAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI  238 (248)
Q Consensus       162 iA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i  238 (248)
                      +|.++++++++|+.+. |+++++|+| +++|+||  +++|||+||++|++||++++++ +|+++|+++|++|++.|++++
T Consensus       224 ia~a~~~iv~ai~~~~-~~~~v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~  301 (309)
T PLN00135        224 AASSACDHIRDWVLGT-PEGTWVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEK  301 (309)
T ss_pred             HHHHHHHHHHHHHhCC-cCCeEEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999832 358999999 9999998  6999999999999999999999 699999999999999999999


Q ss_pred             HHHhhhh
Q psy14621        239 AKGEEFV  245 (248)
Q Consensus       239 ~~~l~~~  245 (248)
                      +.+++.+
T Consensus       302 ~~~~~~~  308 (309)
T PLN00135        302 ELAYSCL  308 (309)
T ss_pred             HHHHHHh
Confidence            9998765

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=7.9e-37  Score=256.52  Aligned_cols=145  Identities=41%  Similarity=0.652  Sum_probs=134.7

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cC-------CCCChHHHHHHHHHHhhccceeeeccCCCCchhHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PS-------VSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSM  162 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~-------~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~si  162 (248)
                      ++++++|++|++|||||| |+||||+||+++    |+       ..++++++++|.++++++|++|+++|  +|+|+||+
T Consensus        14 ~~l~v~~~~v~~~ViGeH-g~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k--~g~t~~s~   90 (174)
T PF02866_consen   14 EKLGVNPSSVNAYVIGEH-GDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEIIKAK--GGSTSYSI   90 (174)
T ss_dssp             HHHTSGGGGEEEEEEBSS-STTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHH--SSSCHHHH
T ss_pred             HHHCcCccceEEEEEecC-CcceeeeeecccccccccccccccccchhHHhhhccccccEeccceeeeec--cccCcCCH
Confidence            578999999999999999 999999999998    44       23777889999999999999999964  29999999


Q ss_pred             HHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-Cc--eEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q psy14621        163 AYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EA--SYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAVPELKKN  237 (248)
Q Consensus       163 A~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~--v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa~~I~~~  237 (248)
                      |.|+++|+++|+.   |++.++|++ +++++|| .+  +|||+||++|++|++++++ + +||++|+++|++|++.|++.
T Consensus        91 A~a~~~~v~ail~---~~~~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~l~~sa~~l~~~  166 (174)
T PF02866_consen   91 AAAAARIVEAILK---DERRILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDL-PLSEEEQEKLKESAKELKKE  166 (174)
T ss_dssp             HHHHHHHHHHHHT---THTEEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSB-SSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh---cccccccceeccccccCcccccceecceEEEcCCeeEEEeCCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999   889999999 9999999 55  9999999999999999999 7 79999999999999999999


Q ss_pred             HHHHhhhh
Q psy14621        238 IAKGEEFV  245 (248)
Q Consensus       238 i~~~l~~~  245 (248)
                      ++.+++|.
T Consensus       167 i~~~~~f~  174 (174)
T PF02866_consen  167 IEKGLEFV  174 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99999984

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=1.6e-35  Score=269.85  Aligned_cols=146  Identities=12%  Similarity=0.119  Sum_probs=127.4

Q ss_pred             hhcCCCCCCeeEe-EEeccCCCcccccccCccc------CCC---CChH-HHHHHHHHHhhccceeeeccCCCCchhHHH
Q psy14621         94 QLKGLNPTDVNVP-VIGGHAGITIIPLISQATP------SVS---FPDD-QLKALTGRIQEAGTEVVKAKAGAGSATLSM  162 (248)
Q Consensus        94 ~~l~v~p~~V~~~-ViGeHsGds~vp~wS~a~p------~~~---~~~~-~~~~i~~~v~~~g~eIi~~k~gkgst~~si  162 (248)
                      ++++++|++|+.+ ||||| |+||||+||+++.      +..   ++++ .+++|.++++++|++|++   +||+|+|++
T Consensus       149 ~~l~v~~~~V~~~~V~GeH-G~s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~  224 (313)
T TIGR01756       149 SKLKVPVDHIYHVVVWGNH-AESMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAAS  224 (313)
T ss_pred             HHhCcChhheeeeEEEECC-CCceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHH
Confidence            8899999999665 99999 9999999999963      322   2332 478999999999999999   588999998


Q ss_pred             H-HHHHHHHHHHhcccCCCCeEEEee-EecC--CCC--CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHHHH
Q psy14621        163 A-YAGARFAFSLIQGLKGESNVIECA-YVKS--DVT--EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAVPELK  235 (248)
Q Consensus       163 A-~a~~~iv~aIl~~l~~~~~il~~s-~~~g--~yg--~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa~~I~  235 (248)
                      + .++++++++|+.+. ++++++||| |+++  +||  +++|||+||++|++|++++++ + +|+++|+++|++|++.|+
T Consensus       225 ~a~ai~~iv~ail~~~-~~~~i~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~  302 (313)
T TIGR01756       225 PVKASLQHMKAWLFGT-RPGEVLSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLF  302 (313)
T ss_pred             HHHHHHHHHHHHhcCC-CCCeEEEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHH
Confidence            8 69999999999932 245999999 8863  898  599999999999999999999 9 699999999999999999


Q ss_pred             HHHHHHhhhh
Q psy14621        236 KNIAKGEEFV  245 (248)
Q Consensus       236 ~~i~~~l~~~  245 (248)
                      ++.+.+++.+
T Consensus       303 ~e~~~~~~~~  312 (313)
T TIGR01756       303 EERETALKAL  312 (313)
T ss_pred             HHHHHHHHhh
Confidence            9999988754

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=99.97  E-value=8.3e-31  Score=233.08  Aligned_cols=161  Identities=32%  Similarity=0.489  Sum_probs=145.6

Q ss_pred             EEEEcCCCccHHHHHHHHHhCC--CcceEEEEecCC--chhhHhhhcCccCC---CeEEEEcC-------ch--------
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSP--LVDHLSLYDIVH--TPGVAADLSHIESK---AHVQAFNG-------AD--------   93 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~--l~~elvLiDi~~--a~g~a~DL~~~~~~---~~v~~~~~-------~d--------   93 (248)
                      |+||||+|++|+++|+.|++++  ..+||+|+|+++  +++.++||+|+...   .++..+++       +|        
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            6899998999999999999999  889999999988  89999999999753   35554332       11        


Q ss_pred             ----------------------------------------------------------------------------hhcC
Q psy14621         94 ----------------------------------------------------------------------------QLKG   97 (248)
Q Consensus        94 ----------------------------------------------------------------------------~~l~   97 (248)
                                                                                                  ++++
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~la~~l~  160 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLG  160 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHHHHHHHHHHHhC
Confidence                                                                                        8889


Q ss_pred             CCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhccc
Q psy14621         98 LNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGL  177 (248)
Q Consensus        98 v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~~l  177 (248)
                      ++|++|+++|||+| |++|+|+||+++                                     +|.++++++++|+.  
T Consensus       161 v~~~~v~~~v~G~h-g~~~~~~~s~~~-------------------------------------~a~~~~~ii~ai~~--  200 (263)
T cd00650         161 VDPDDVKVYILGEH-GGSQVPDWSTVR-------------------------------------IATSIADLIRSLLN--  200 (263)
T ss_pred             CCccceEEEEEEcC-CCceEeccccch-------------------------------------HHHHHHHHHHHHHc--
Confidence            99999999999999 899999999964                                     89999999999999  


Q ss_pred             CCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621        178 KGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI  238 (248)
Q Consensus       178 ~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i  238 (248)
                       |++.++|++ +++|.||  +++|||+||++|++|+++++++ +|+++|+++|++|++.++..+
T Consensus       201 -~~~~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~~~  262 (263)
T cd00650         201 -DEGEILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKKEL  262 (263)
T ss_pred             -CCCEEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHh
Confidence             899999999 9999998  7999999999999999999999 799999999999999999765

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496|consensus

Probab=99.95  E-value=6e-28  Score=209.34  Aligned_cols=209  Identities=28%  Similarity=0.367  Sum_probs=173.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCCC--eEEEEcCc-------h
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESKA--HVQAFNGA-------D   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~~--~v~~~~~~-------d   93 (248)
                      ...+|.|.||+|+||++++|.++...++.     .|+|+|+.+    .+|++|+|+||++|.  .|..+++.       +
T Consensus         3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv~   82 (332)
T KOG1496|consen    3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDVD   82 (332)
T ss_pred             CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhhHHHhhhcccChhhhhccCc
Confidence            35689999999999999999999854442     799999998    799999999998653  22222211       0


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        83 ~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTRLDhNR  162 (332)
T KOG1496|consen   83 VAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTRLDHNR  162 (332)
T ss_pred             EEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHhhhCCCCchhcchhhhhhchhh
Confidence                                                                                            


Q ss_pred             ------hhcCCCCCCe-eEeEEeccCCCcccccccCcc--------cCCC-CChHH--HHHHHHHHhhccceeeeccCCC
Q psy14621         94 ------QLKGLNPTDV-NVPVIGGHAGITIIPLISQAT--------PSVS-FPDDQ--LKALTGRIQEAGTEVVKAKAGA  155 (248)
Q Consensus        94 ------~~l~v~p~~V-~~~ViGeHsGds~vp~wS~a~--------p~~~-~~~~~--~~~i~~~v~~~g~eIi~~k~gk  155 (248)
                            .++||..++| +..|||+| ..||+|+..+++        |+.+ +.++.  ..++++.|+++|..||++|  |
T Consensus       163 A~~QlA~klgv~~~~VkNviIWGNH-SsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~ar--k  239 (332)
T KOG1496|consen  163 ALAQLALKLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKAR--K  239 (332)
T ss_pred             HHHHHHHhhCCchhhcceeEEeccc-ccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhhh--h
Confidence                  7789999999 89999999 579999999997        3333 33332  5689999999999999985  7


Q ss_pred             CchhHHHHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEe-cCCCCCHHHHHHHHHHH
Q psy14621        156 GSATLSMAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNL-GLGKLSDFEKELVKAAV  231 (248)
Q Consensus       156 gst~~siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~-~l~~Ls~~E~~~L~~Sa  231 (248)
                      -|+.+|.|.++++.++.+..|. .+..+++++ |.+|.||  +++.||+||++- +|-++++ +| +++|+-++++..++
T Consensus       240 ~SSA~SaA~aacDhi~dw~~gT-peG~fvSmgV~sDGsYgip~gli~SfPv~~k-~g~wkiVqgl-~iddf~r~km~~t~  316 (332)
T KOG1496|consen  240 LSSAMSAAKAACDHIRDWWFGT-PEGTFVSMGVYSDGSYGIPDGLIFSFPVTIK-NGDWKIVQGL-PIDDFSREKMDLTA  316 (332)
T ss_pred             hhhhhhHHHhHhhhhhheecCC-CCccEEEEeeecCCCCCCCCCeEEEcceEec-CCceEEEcCc-chhHHHHHhhhhhH
Confidence            8999999999999999999854 356899999 9999998  799999999995 5655555 79 59999999999999


Q ss_pred             HHHHHHHHHHhhhhh
Q psy14621        232 PELKKNIAKGEEFVA  246 (248)
Q Consensus       232 ~~I~~~i~~~l~~~~  246 (248)
                      ++|+++.+.++.++.
T Consensus       317 ~EL~eEkd~a~~~l~  331 (332)
T KOG1496|consen  317 KELKEEKDLAYSCLS  331 (332)
T ss_pred             HHHHHhHHHHHHhhc
Confidence            999999999987764

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.36  E-value=3.9e-13  Score=109.45  Aligned_cols=58  Identities=41%  Similarity=0.596  Sum_probs=52.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCCC--eEEEEcC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKA--HVQAFNG   91 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~~--~v~~~~~   91 (248)
                      |||+||||+|+||+++|++|+++++++||+|+|+++  ++|+++||+|+.+++  ++.++.+
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~   62 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSG   62 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEES
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccc
Confidence            699999999999999999999999999999999997  999999999998654  4555544

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=98.87  E-value=2e-07  Score=88.96  Aligned_cols=65  Identities=18%  Similarity=0.213  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC---CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHH
Q psy14621        162 MAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT---EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAA  230 (248)
Q Consensus       162 iA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg---~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~S  230 (248)
                      -|.++++|++||+.   |++.+++++ +.+|.|+   .++++++||+||++|++.+ .+.+|.+.-...++.-
T Consensus       315 ya~~a~~ii~aI~~---d~~~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi-~vg~lP~~~~~l~~~~  383 (437)
T cd05298         315 HGEYIVDLAASIAY---NTKERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPL-VVGKIPTFYKGLMEQQ  383 (437)
T ss_pred             hHHHHHHHHHHHHc---CCCeEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceec-ccCCCCHHHHHHHHHH
Confidence            37889999999999   999999998 8788886   6999999999999999997 4445777766655443

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK15076 alpha-galactosidase; Provisional

Probab=98.57  E-value=2.6e-06  Score=81.37  Aligned_cols=63  Identities=17%  Similarity=0.255  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhcccCCCCeEEEeeEecCC-C-C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHH
Q psy14621        163 AYAGARFAFSLIQGLKGESNVIECAYVKSD-V-T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKA  229 (248)
Q Consensus       163 A~a~~~iv~aIl~~l~~~~~il~~s~~~g~-y-g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~  229 (248)
                      +..++++++||..   |++.++.+...+.. . +  .|.+.=+||+++++|++.+- +.+|.+..+..++.
T Consensus       307 ~e~a~~ii~ai~~---~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-~g~lP~~~~~l~~~  373 (431)
T PRK15076        307 REYASTIIEAIET---GEPSVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTK-VGDLPPQLAALNRT  373 (431)
T ss_pred             hHHHHHHHHHHhc---CCceEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeee-cCCCCHHHHHHHHH
Confidence            4568899999998   88877776544433 2 2  69999999999999999974 33577776665444

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=98.51  E-value=9.7e-06  Score=77.18  Aligned_cols=63  Identities=16%  Similarity=0.283  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhcccCCCCeEEEeeEecCC-C-C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECAYVKSD-V-T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAA  230 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s~~~g~-y-g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~S  230 (248)
                      ..++++++||..   |++.++.+..-+.. - +  .+.+.=+||.++++|++.+ ...+|.+.....++.-
T Consensus       311 e~a~~ii~ai~~---~~~~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~-~~g~lp~~~~~l~~~~  377 (423)
T cd05297         311 EYASPIIEALVT---GKPRRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPE-KIGPLPPQLAALIRPR  377 (423)
T ss_pred             HHHHHHHHHHhc---CCceEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceec-ccCCCCHHHHHHHHHH
Confidence            457899999998   88888777633332 2 2  7999999999999999997 4446766655554443

linked to 3D####ucture

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=98.48  E-value=8.3e-06  Score=77.76  Aligned_cols=62  Identities=18%  Similarity=0.247  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhcccCCCCeEEEeeEecCCC--C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHH
Q psy14621        163 AYAGARFAFSLIQGLKGESNVIECAYVKSDV--T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVK  228 (248)
Q Consensus       163 A~a~~~iv~aIl~~l~~~~~il~~s~~~g~y--g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~  228 (248)
                      +-.++.+++||.+   |++.++.+...+...  +  .+.+.=+||+++++|++.+ .+.+|.+.-..+++
T Consensus       313 ~e~a~~ii~ai~~---~~~~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~-~vg~lp~~~~~Li~  378 (425)
T cd05197         313 SEAAIPLIRALLN---DNGARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPI-KVGPLDRFVKGLLR  378 (425)
T ss_pred             HHHHHHHHHHHHc---CCCeEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceec-ccCCCCHHHHHHHH
Confidence            4567789999999   888877665333222  2  6999999999999999986 44457654444333

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=97.96  E-value=0.0002  Score=68.19  Aligned_cols=62  Identities=10%  Similarity=0.160  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHhcccCCCCeEEEeeEec-CCC-C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHH
Q psy14621        163 AYAGARFAFSLIQGLKGESNVIECAYVK-SDV-T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVK  228 (248)
Q Consensus       163 A~a~~~iv~aIl~~l~~~~~il~~s~~~-g~y-g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~  228 (248)
                      +-.++++++||..   |++..+.+...+ |.- +  .+.+.=+||.++++|+..+ ...+|.+.....++
T Consensus       302 ~e~a~~ii~ai~~---~~~~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~-~vg~lP~~~~~l~~  367 (419)
T cd05296         302 SEAALALISAIYN---DKGDIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPL-PVGPLPPAILGLIQ  367 (419)
T ss_pred             HHHHHHHHHHHhc---CCCcEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceec-cCCCCCHHHHHHHH
Confidence            3567899999998   888777665333 322 2  6999999999999999996 44457777665443

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>KOG1494|consensus

Probab=97.22  E-value=0.00012  Score=65.99  Aligned_cols=29  Identities=76%  Similarity=1.201  Sum_probs=24.4

Q ss_pred             cccCCCCCChhhhhhhccCcccccccccc
Q psy14621          2 VAGASGGIGQPLSLLLKQSPLVDHLSLYD   30 (248)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   30 (248)
                      |-||+||||||+|+|||+.|+++.+..++
T Consensus        33 vlGAaGGIGQPLSLLlK~np~Vs~LaLYD   61 (345)
T KOG1494|consen   33 VLGAAGGIGQPLSLLLKLNPLVSELALYD   61 (345)
T ss_pred             EEecCCccCccHHHHHhcCcccceeeeee
Confidence            56999999999999999999887754443

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.20  E-value=0.005  Score=51.91  Aligned_cols=32  Identities=34%  Similarity=0.594  Sum_probs=28.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||+|||| |..|..+|+.++..|.  +++|+|.++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~   32 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSP   32 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSH
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECCh
Confidence            7999999 9999999999999997  999999987

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.14  E-value=0.0061  Score=51.72  Aligned_cols=33  Identities=30%  Similarity=0.382  Sum_probs=26.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||. |+||..+|..++..|.  +++-+|+++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDE   33 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-H
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCCh
Confidence            79999999 9999999999999996  899999986

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.91  E-value=0.013  Score=45.91  Aligned_cols=45  Identities=24%  Similarity=0.388  Sum_probs=35.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSH   79 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~   79 (248)
                      ||+||||+|.+|..++.+|...+-++-+.+++..+..|..+.-.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~   45 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVF   45 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTT
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhc
Confidence            899999999999999999999998887788877654455444433

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.78  E-value=0.0092  Score=47.54  Aligned_cols=35  Identities=31%  Similarity=0.526  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDI   36 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSB
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcc
Confidence            459999999 9999999999999996 7999999865

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.63  E-value=0.014  Score=52.31  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||+|||+ |.+|.++|..++..+.  +++++|+++
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~   36 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISD   36 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCH
Confidence            358999999 9999999999999986  899999987

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.53  E-value=0.017  Score=47.42  Aligned_cols=32  Identities=31%  Similarity=0.505  Sum_probs=30.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||+|+|| |+-|.++|..|+.++  .++.|++.++
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g--~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNG--HEVTLWGRDE   32 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCT--EEEEEETSCH
T ss_pred             CEEEECc-CHHHHHHHHHHHHcC--CEEEEEeccH
Confidence            8999999 999999999999999  5999999876

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.47  E-value=0.022  Score=51.47  Aligned_cols=34  Identities=18%  Similarity=0.377  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||+|||+ |..|..+|.+++..+.  +++|+|+++
T Consensus         5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~   38 (286)
T PRK07819          5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTE   38 (286)
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCH
Confidence            359999999 9999999999999997  899999987

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.34  E-value=0.022  Score=51.14  Aligned_cols=33  Identities=30%  Similarity=0.539  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||+ |.+|..+|..++..+.  +++|+|+++
T Consensus         4 ~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISD   36 (287)
T ss_pred             cEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCH
Confidence            59999999 9999999999999886  899999986

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.31  E-value=0.021  Score=49.90  Aligned_cols=71  Identities=23%  Similarity=0.306  Sum_probs=46.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhcCccCCCeEEEEcCch----hhcCCCCCCeeEeEE
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLSHIESKAHVQAFNGAD----QLKGLNPTDVNVPVI  108 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~~~~~~~~v~~~~~~d----~~l~v~p~~V~~~Vi  108 (248)
                      ||++|||+ |.+|+++|-.|..++-  +++++|.++ ..-+.+.-   ...+++..-.+.|    +.+|++-.++-..+.
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~~~---~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEEFLAD---ELDTHVVIGDATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHhhh---hcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence            68999999 9999999999999986  899999987 22221110   1123333322222    566666666655566


Q ss_pred             ec
Q psy14621        109 GG  110 (248)
Q Consensus       109 Ge  110 (248)
                      |+
T Consensus        75 ~~   76 (225)
T COG0569          75 GN   76 (225)
T ss_pred             CC
Confidence            54

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.29  E-value=0.023  Score=51.16  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+|||+ |.+|..+|..|+..+.  +++|+|+++
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~   37 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSA   37 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            469999999 9999999999999986  899999986

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.24  E-value=0.026  Score=51.04  Aligned_cols=47  Identities=26%  Similarity=0.445  Sum_probs=39.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHI   80 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~   80 (248)
                      +..||.|+|| |.+|.++++.|...+ +.+|.++|++.  +++.+.++.+.
T Consensus       126 ~~k~vlIlGa-GGaaraia~aL~~~G-~~~I~I~nR~~~ka~~la~~l~~~  174 (284)
T PRK12549        126 SLERVVQLGA-GGAGAAVAHALLTLG-VERLTIFDVDPARAAALADELNAR  174 (284)
T ss_pred             cCCEEEEECC-cHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhh
Confidence            3469999999 999999999999988 46799999987  77777777654

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.16  E-value=0.028  Score=52.57  Aligned_cols=33  Identities=24%  Similarity=0.383  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||+|||| |.+|.++|+.|+..+.  +++++|...
T Consensus         2 ~~vvIIGa-G~~G~~~A~~La~~g~--~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGA-GITGVTTAYALAQRGY--QVTVFDRHR   34 (410)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            49999999 9999999999999885  899999864

>KOG1429|consensus

Probab=95.10  E-value=0.032  Score=50.75  Aligned_cols=51  Identities=22%  Similarity=0.281  Sum_probs=37.2

Q ss_pred             cccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCcc
Q psy14621         28 LYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIE   81 (248)
Q Consensus        28 ~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~   81 (248)
                      .....+.||+|+||+||||++++-.|+..+  .++..+|-.. .|....+.|..
T Consensus        22 ~~p~~~lrI~itGgaGFIgSHLvdkLm~eg--h~VIa~Dn~f-tg~k~n~~~~~   72 (350)
T KOG1429|consen   22 VKPSQNLRILITGGAGFIGSHLVDKLMTEG--HEVIALDNYF-TGRKENLEHWI   72 (350)
T ss_pred             ccCCCCcEEEEecCcchHHHHHHHHHHhcC--CeEEEEeccc-ccchhhcchhc
Confidence            334456899999999999999999999998  5777777643 23333444443

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.03  E-value=0.03  Score=50.38  Aligned_cols=33  Identities=18%  Similarity=0.424  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||+|||+ |.+|..+|..++..+.  +++++|+++
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSE   36 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCH
Confidence            58999999 9999999999999986  899999987

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=95.00  E-value=0.034  Score=51.06  Aligned_cols=35  Identities=14%  Similarity=0.288  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++|+|||+ |-+|.++||.|+..+.  +++++|..+
T Consensus         3 ~~~~vvVIGg-Gi~Gls~A~~La~~G~--~V~vie~~~   37 (387)
T COG0665           3 MKMDVVIIGG-GIVGLSAAYYLAERGA--DVTVLEAGE   37 (387)
T ss_pred             CcceEEEECC-cHHHHHHHHHHHHcCC--EEEEEecCc
Confidence            4579999998 9999999999999998  899999877

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.00  E-value=0.032  Score=47.91  Aligned_cols=35  Identities=29%  Similarity=0.510  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|+|+ |.+|+.+|..|+..|+ .+++|+|.+.
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   55 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLARAGI-GKLILVDFDV   55 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence            469999999 9999999999999995 6899999874

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.98  E-value=0.033  Score=52.64  Aligned_cols=35  Identities=29%  Similarity=0.438  Sum_probs=32.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|||| |+||+++|..|++++- .||.+.|...
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~   35 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSK   35 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCH
Confidence            579999999 9999999999999987 7999999985

>PLN02572 UDP-sulfoquinovose synthase

Probab=94.96  E-value=0.036  Score=53.05  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=31.2

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      ..+++||.|+||+|+||++++..|+.++.  +++++|.
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~   79 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDN   79 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEec
Confidence            34567999999999999999999999885  7888873

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=94.92  E-value=0.038  Score=52.91  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.|||.|+||+|+||++++-.|..++.  +++.+|..
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~  153 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNF  153 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            458999999999999999999999885  88999864

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=94.90  E-value=0.035  Score=51.77  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||| |.+|.++|+.|+.++.  +++|+|...
T Consensus         1 ~~v~IVG~-Gi~Gls~A~~l~~~g~--~V~vle~~~   33 (416)
T PRK00711          1 MRVVVLGS-GVIGVTSAWYLAQAGH--EVTVIDRQP   33 (416)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            58999999 9999999999999886  799999863

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.83  E-value=0.039  Score=44.23  Aligned_cols=33  Identities=30%  Similarity=0.624  Sum_probs=30.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||.|||+ |.+|+.+|..|+..++ .++.|+|-+.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            6999999 9999999999999996 7899999875

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.83  E-value=0.043  Score=45.19  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||++||. |..|+.+|..|...+.  ++..+|+++
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~   34 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP   34 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch
Confidence            579999999 9999999999999987  899999876

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.80  E-value=0.038  Score=52.58  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||+|||. |.+|.++|..|+..+.  ++..+|+++
T Consensus         2 ~~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~   36 (415)
T PRK11064          2 SFETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQ   36 (415)
T ss_pred             CccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCH
Confidence            3579999999 9999999999999985  899999987

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=94.79  E-value=0.032  Score=44.73  Aligned_cols=32  Identities=22%  Similarity=0.291  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEE
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY   65 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLi   65 (248)
                      ..++||+|||| |+||.+++..|...+.  +++-+
T Consensus         8 ~~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v   39 (127)
T PF10727_consen    8 AARLKIGIIGA-GRVGTALARALARAGH--EVVGV   39 (127)
T ss_dssp             ----EEEEECT-SCCCCHHHHHHHHTTS--EEEEE
T ss_pred             CCccEEEEECC-CHHHHHHHHHHHHCCC--eEEEE
Confidence            35689999999 9999999999999985  45444

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.75  E-value=0.037  Score=50.29  Aligned_cols=33  Identities=24%  Similarity=0.455  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||+ |.+|+++|..|+..+.  +++++|.++
T Consensus         3 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADP   35 (308)
T ss_pred             cEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCH
Confidence            58999998 9999999999999986  899999986

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.71  E-value=0.049  Score=47.05  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||++|++|.+++..|...+  .++.++|.++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G--~~V~v~~r~~   34 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAG--NKIIIGSRDL   34 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCC--CEEEEEEcCH
Confidence            689999833999999999999987  4899999876

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK07236 hypothetical protein; Provisional

Probab=94.71  E-value=0.046  Score=50.77  Aligned_cols=37  Identities=16%  Similarity=0.308  Sum_probs=32.7

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++.++||.|||| |-.|.++|+.|...++  +++++|..+
T Consensus         3 ~~~~~~ViIVGa-G~aGl~~A~~L~~~G~--~v~v~E~~~   39 (386)
T PRK07236          3 HMSGPRAVVIGG-SLGGLFAALLLRRAGW--DVDVFERSP   39 (386)
T ss_pred             CCCCCeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            355689999999 9999999999999997  799999764

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=94.67  E-value=0.043  Score=49.41  Aligned_cols=33  Identities=30%  Similarity=0.376  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||+|||+ |.+|..+|..++..+.  +++++|.++
T Consensus         5 ~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDP   37 (295)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCH
Confidence            58999999 9999999999999985  899999986

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=94.64  E-value=0.07  Score=38.42  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=29.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||+|||+ |.+|.-+|..|...+.  ++.|++..+
T Consensus         1 ~vvViGg-G~ig~E~A~~l~~~g~--~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGG-GFIGIELAEALAELGK--EVTLIERSD   32 (80)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHTTS--EEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHhCc--EEEEEeccc
Confidence            7999999 9999999999999884  999999987

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=94.63  E-value=0.052  Score=49.80  Aligned_cols=35  Identities=20%  Similarity=0.114  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +++||.|+||+|++|++++..|..++.  +++.+|..
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~   48 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNF   48 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            457999999999999999999999874  78888863

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.62  E-value=0.053  Score=49.26  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|||+|||+ |++|.++|..|...+.  ++.++|.++
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~   37 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRS   37 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            4579999999 9999999999999985  899999875

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.61  E-value=0.045  Score=48.89  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.+|..+|..|...+.  ++.++|.++
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~   33 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRG   33 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCh
Confidence            58999999 9999999999998874  899999854

>PRK06153 hypothetical protein; Provisional

Probab=94.60  E-value=0.04  Score=52.04  Aligned_cols=35  Identities=23%  Similarity=0.508  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||+|||+ |.+|+.++..|+..|+ .+|+|+|-+.
T Consensus       176 ~~~VaIVG~-GG~GS~Va~~LAR~GV-geI~LVD~D~  210 (393)
T PRK06153        176 GQRIAIIGL-GGTGSYILDLVAKTPV-REIHLFDGDD  210 (393)
T ss_pred             hCcEEEEcC-CccHHHHHHHHHHcCC-CEEEEECCCE
Confidence            459999999 9999999999999996 7999999865

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.56  E-value=0.049  Score=49.32  Aligned_cols=33  Identities=24%  Similarity=0.542  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||+ |.+|.++|..|+..+.  +++++|.++
T Consensus         5 ~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVME   37 (311)
T ss_pred             cEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCH
Confidence            58999999 9999999999999886  899999977

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=94.55  E-value=0.047  Score=52.97  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|||+|||+ |.||..+|..|+..+.--+++.+|+++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            589999999 999999999999986444899999987

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.48  E-value=0.051  Score=45.58  Aligned_cols=33  Identities=42%  Similarity=0.665  Sum_probs=30.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||.|||+ |.+|+.+|..|+..++ .++.|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6999999 9999999999999986 6899999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.48  E-value=0.052  Score=46.99  Aligned_cols=35  Identities=40%  Similarity=0.608  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.+|..|+..++ .+|.|+|.+.
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV   62 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            469999999 9999999999999996 6899999874

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.43  E-value=0.043  Score=49.29  Aligned_cols=33  Identities=30%  Similarity=0.529  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||+|||+ |.+|..+|..|+..+.  ++.++|+++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQ   34 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCH
Confidence            48999999 9999999999999886  899999987

>PLN02427 UDP-apiose/xylose synthase

Probab=94.39  E-value=0.062  Score=49.93  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ++|||.|+|++|+||++++-.|..++- .+++.+|.+
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g-~~V~~l~r~   48 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETP-HKVLALDVY   48 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCC-CEEEEEecC
Confidence            357999999999999999999998742 278888864

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.33  E-value=0.053  Score=48.96  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|||+|||+ |.+|.++|..|...+.  ++.++|.++
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~   34 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDP   34 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCH
Confidence            479999999 9999999999999875  789999975

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.31  E-value=0.07  Score=48.52  Aligned_cols=36  Identities=14%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|||+|||+ |.||..+|..|...+.  ++.+++.++
T Consensus         3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~   38 (313)
T PRK06249          3 SETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSD   38 (313)
T ss_pred             CcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC
Confidence            35689999999 9999999999999874  888998765

>PLN02206 UDP-glucuronate decarboxylase

Probab=94.30  E-value=0.056  Score=51.83  Aligned_cols=35  Identities=23%  Similarity=0.249  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.+||.|+|++|+||++++..|..++.  +++.+|..
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~  152 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNF  152 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCC
Confidence            458999999999999999999999885  78888753

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=94.23  E-value=0.068  Score=39.56  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCC-cceEEEE-ecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPL-VDHLSLY-DIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l-~~elvLi-Di~~   69 (248)
                      ||+|||+ |++|++++..|...++ -.++.++ +.++
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~   36 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP   36 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH
Confidence            8999999 9999999999999884 3477756 8776

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK08507 prephenate dehydrogenase; Validated

Probab=94.23  E-value=0.057  Score=48.18  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.+|.++|..|...+...++..+|.++
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~   35 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNE   35 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCH
Confidence            58999998 999999999999988766788999876

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=94.12  E-value=0.08  Score=48.22  Aligned_cols=34  Identities=15%  Similarity=0.125  Sum_probs=29.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||.|+||+|+||++++..|..++.  +++++|.+.
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~   34 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRS   34 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCC
Confidence            4899999999999999999999885  788888653

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.11  E-value=0.05  Score=49.73  Aligned_cols=34  Identities=29%  Similarity=0.328  Sum_probs=30.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||+ |.+|.++|..|...+.  ++.++|.++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~   35 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRAR   35 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHH
Confidence            379999999 9999999999999985  799999754

>PLN02778 3,5-epimerase/4-reductase

Probab=94.08  E-value=0.1  Score=47.12  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEE
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY   65 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLi   65 (248)
                      .+...|||.|+|++|++|++++..|..++.  ++++.
T Consensus         5 ~~~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~   39 (298)
T PLN02778          5 AGSATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYG   39 (298)
T ss_pred             CCCCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEe
Confidence            344568999999999999999999999885  56544

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.04  E-value=0.076  Score=49.02  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=31.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||+|||+ |.+|..+|..++..|+  +++|+|+++
T Consensus         8 ~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAP   40 (321)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCH
Confidence            58999999 9999999999999997  899999986

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.02  E-value=0.071  Score=48.74  Aligned_cols=34  Identities=26%  Similarity=0.404  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|||+|||+ |.+|.++|..|...+.  ++.++|.++
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~   37 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRP   37 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            579999999 9999999999998875  799999975

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.99  E-value=0.063  Score=48.99  Aligned_cols=33  Identities=24%  Similarity=0.548  Sum_probs=29.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||| |.+|.++|..|...+.  ++.|++.++
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~   33 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNH   33 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCH
Confidence            58999999 9999999999999874  789999865

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.99  E-value=0.073  Score=49.42  Aligned_cols=35  Identities=20%  Similarity=0.396  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            469999999 9999999999999995 7999999863

>CHL00194 ycf39 Ycf39; Provisional

Probab=93.98  E-value=0.079  Score=47.90  Aligned_cols=34  Identities=15%  Similarity=0.192  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|+||+.++..|..++.  +++.++.+.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~   34 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNL   34 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcCh
Confidence            5899999999999999999999885  788887764

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=93.98  E-value=0.079  Score=49.00  Aligned_cols=37  Identities=16%  Similarity=0.272  Sum_probs=32.1

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++..+|.|||| |-+|.++|+.|...++  +++|+|..+
T Consensus         4 ~~~~~dViIVGa-G~~Gl~~A~~L~~~G~--~v~liE~~~   40 (388)
T PRK07494          4 EKEHTDIAVIGG-GPAGLAAAIALARAGA--SVALVAPEP   40 (388)
T ss_pred             CCCCCCEEEECc-CHHHHHHHHHHhcCCC--eEEEEeCCC
Confidence            344568999999 9999999999999986  799999865

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.95  E-value=0.064  Score=48.02  Aligned_cols=33  Identities=24%  Similarity=0.196  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.+|.++|..|...+.  ++.++|.++
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~   33 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRE   33 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            58999998 9999999999999875  899999876

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.88  E-value=0.096  Score=44.88  Aligned_cols=39  Identities=26%  Similarity=0.302  Sum_probs=33.7

Q ss_pred             cccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         28 LYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        28 ~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....+.++|+|+|. |++|+++|..|...+.  +++.+|.++
T Consensus        23 ~~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~--~Vvv~D~~~   61 (200)
T cd01075          23 TDSLEGKTVAVQGL-GKVGYKLAEHLLEEGA--KLIVADINE   61 (200)
T ss_pred             CCCCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            34456689999999 9999999999999986  899999876

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08328 hypothetical protein; Provisional

Probab=93.83  E-value=0.082  Score=46.33  Aligned_cols=36  Identities=33%  Similarity=0.577  Sum_probs=32.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCc
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHT   70 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a   70 (248)
                      ..||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+..
T Consensus        27 ~~~VlIiG~-GGlGs~ia~~La~~Gv-g~i~lvD~D~v   62 (231)
T PRK08328         27 KAKVAVVGV-GGLGSPVAYYLAAAGV-GRILLIDEQTP   62 (231)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcc
Confidence            469999999 9999999999999995 78999997663

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.82  E-value=0.08  Score=50.10  Aligned_cols=33  Identities=33%  Similarity=0.437  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.+|..+|..|+..+.  ++..+|+++
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~   33 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQ   33 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCH
Confidence            58999999 9999999999999886  799999976

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.78  E-value=0.09  Score=46.97  Aligned_cols=32  Identities=22%  Similarity=0.277  Sum_probs=29.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|+|||+ |-+|.++|+.|+.++.  +++|+|.+.
T Consensus         1 DvvIIGa-Gi~G~~~A~~La~~G~--~V~l~e~~~   32 (358)
T PF01266_consen    1 DVVIIGA-GIAGLSTAYELARRGH--SVTLLERGD   32 (358)
T ss_dssp             EEEEECT-SHHHHHHHHHHHHTTS--EEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeecc
Confidence            5899999 9999999999999998  999999875

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=93.75  E-value=0.087  Score=45.87  Aligned_cols=35  Identities=40%  Similarity=0.608  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        21 ~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            459999999 9999999999999995 7999999765

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.75  E-value=0.09  Score=46.43  Aligned_cols=35  Identities=29%  Similarity=0.536  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        24 ~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            469999999 9999999999999985 7999999865

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=93.74  E-value=0.089  Score=48.03  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~   68 (248)
                      +|||.|+||+|+||++++..|... +.  +++.+|..
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~   35 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQ   35 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCc
Confidence            469999999999999999999875 43  78888864

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=93.72  E-value=0.41  Score=42.82  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ++||+|+|++|.+|..++-.+...+-+.=+.++|.+
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~   36 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH   36 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            369999996699999999999887655556678843

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.72  E-value=0.077  Score=46.70  Aligned_cols=35  Identities=37%  Similarity=0.479  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|+|+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus        11 ~~~VlVvG~-GGvGs~va~~Lar~GV-g~i~LvD~D~   45 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEALARSGV-GKLTLIDFDV   45 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence            459999999 9999999999999995 7999999765

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=93.70  E-value=0.09  Score=45.04  Aligned_cols=36  Identities=33%  Similarity=0.607  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|+|+ |.+|+.+|..|+..++ .+|.|+|-+.
T Consensus        20 ~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            3469999999 9999999999999995 7899999865

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.69  E-value=0.097  Score=46.29  Aligned_cols=36  Identities=33%  Similarity=0.519  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        31 ~~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            3469999999 9999999999999995 7999999764

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.68  E-value=0.083  Score=47.32  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=28.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      |||+|||+ |.+|..+|..|...+.  ++.+++.
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR   31 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec
Confidence            68999999 9999999999999874  7999997

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=93.66  E-value=0.094  Score=44.96  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+||||+|++|+.++--+..++.  |+.-+=.|+
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~   34 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNA   34 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeCh
Confidence            7999999999999999999999987  566555554

>PRK05868 hypothetical protein; Validated

Probab=93.65  E-value=0.068  Score=49.70  Aligned_cols=34  Identities=18%  Similarity=0.227  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++|.|||+ |-+|.++|..|...++  ++.+||..+
T Consensus         1 ~~~V~IvGg-G~aGl~~A~~L~~~G~--~v~viE~~~   34 (372)
T PRK05868          1 MKTVVVSGA-SVAGTAAAYWLGRHGY--SVTMVERHP   34 (372)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC--CEEEEcCCC
Confidence            468999999 9999999999999997  799999876

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=93.64  E-value=0.14  Score=46.55  Aligned_cols=35  Identities=14%  Similarity=0.104  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.+||.|+||+|+||++++..|..++.  +++++|..
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~   39 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRR   39 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecc
Confidence            457999999999999999999999885  78887764

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.64  E-value=0.077  Score=50.21  Aligned_cols=33  Identities=24%  Similarity=0.273  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.||...+-.|++.|  .|++.+|+++
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~G--HeVv~vDid~   33 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELG--HEVVCVDIDE   33 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcC--CeEEEEeCCH
Confidence            79999998 999999999999998  4999999986

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=93.58  E-value=0.13  Score=46.38  Aligned_cols=49  Identities=24%  Similarity=0.358  Sum_probs=43.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCcc
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIE   81 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~   81 (248)
                      +++..+.|+||++.||..+|..|+.++.  +|+|+..++  ++..+-+|++-.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~   54 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT   54 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh
Confidence            4567999999999999999999999997  899999988  778888888744

>PRK06753 hypothetical protein; Provisional

Probab=93.57  E-value=0.094  Score=48.15  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||.|||| |-.|.++|..|.++++  +++++|..+
T Consensus         1 ~~V~IvGg-G~aGl~~A~~L~~~g~--~v~v~E~~~   33 (373)
T PRK06753          1 MKIAIIGA-GIGGLTAAALLQEQGH--EVKVFEKNE   33 (373)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCC
Confidence            58999999 9999999999999997  799999876

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=93.55  E-value=0.1  Score=46.30  Aligned_cols=37  Identities=19%  Similarity=0.325  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcc--eEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVD--HLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~--elvLiDi~~   69 (248)
                      ..|||+|||+ |++|.+++..|...+...  ++..+|.++
T Consensus         2 ~~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~   40 (260)
T PTZ00431          2 ENIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSK   40 (260)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCCh
Confidence            3579999999 999999999999887543  488888765

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=93.55  E-value=0.093  Score=47.53  Aligned_cols=36  Identities=22%  Similarity=0.256  Sum_probs=32.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+|||+ |.+|.++|..|...+...++.++|.++
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            369999998 999999999999988766899999976

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=93.53  E-value=0.1  Score=46.60  Aligned_cols=33  Identities=21%  Similarity=0.363  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||| |-.|.++|+.|+.+++  ++.++|...
T Consensus         2 ~dV~IvGa-G~aGl~~A~~L~~~G~--~v~i~E~~~   34 (356)
T PF01494_consen    2 YDVAIVGA-GPAGLAAALALARAGI--DVTIIERRP   34 (356)
T ss_dssp             EEEEEE---SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             ceEEEECC-CHHHHHHHHHHHhccc--ccccchhcc
Confidence            48999999 9999999999999997  799999876

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.51  E-value=0.08  Score=50.04  Aligned_cols=32  Identities=28%  Similarity=0.489  Sum_probs=28.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.||..+|..++. +  -+++.+|+++
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G--~~VigvD~d~   32 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-N--HEVVALDILP   32 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-C--CcEEEEECCH
Confidence            59999999 9999999987775 6  3899999987

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.50  E-value=0.088  Score=51.23  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||+ |.+|..+|..++..+.  ++.++|+++
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHP   37 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCH
Confidence            58999999 9999999999999997  899999987

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=93.49  E-value=0.087  Score=47.35  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=27.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      |||.|+|++|+||++++..|..++   +++.+|..
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~   32 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVH   32 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccc
Confidence            589999999999999999998887   46666654

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=93.44  E-value=0.12  Score=48.19  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ..+||.|+|++|+||++++-.|..++.  ++..+|..
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~   54 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWK   54 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEec
Confidence            457999999999999999999999875  78888764

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.41  E-value=0.28  Score=41.87  Aligned_cols=36  Identities=22%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.+|..++..|+.++.  ++++++.++
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~   39 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE   39 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346999999999999999999999985  699999886

>PRK07023 short chain dehydrogenase; Provisional

Probab=93.37  E-value=0.14  Score=43.92  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+|++|.+|.++|..|+.++.  ++++++.+.
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~   35 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR   35 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence            46999999999999999999999885  788888765

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=93.36  E-value=0.11  Score=46.78  Aligned_cols=36  Identities=25%  Similarity=0.462  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|+|+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus        29 ~~s~VlVvG~-GGVGs~vae~Lar~GV-g~itLiD~D~   64 (268)
T PRK15116         29 ADAHICVVGI-GGVGSWAAEALARTGI-GAITLIDMDD   64 (268)
T ss_pred             cCCCEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            3469999999 9999999999999995 6899999875

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=93.36  E-value=0.094  Score=48.95  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .++|+|||| |-+|.++|.+|...|+  +++|+|..
T Consensus         2 ~~dV~IvGa-G~aGl~lA~~L~~~G~--~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGA-GPAGLALALALARAGL--DVTLLERA   34 (387)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHhCCC--cEEEEccC
Confidence            468999999 9999999999999996  89999996

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=93.35  E-value=0.099  Score=48.01  Aligned_cols=32  Identities=25%  Similarity=0.268  Sum_probs=28.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .|+|||| |-+|.++||.|+.++.  +++|+|...
T Consensus         2 dvvIIGa-Gi~G~s~A~~La~~g~--~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGA-GIMGCFAAYHLAKHGK--KTLLLEQFD   33 (380)
T ss_pred             cEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            5899999 9999999999999985  799999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=93.33  E-value=0.11  Score=46.36  Aligned_cols=35  Identities=31%  Similarity=0.147  Sum_probs=29.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||.|+||+|+||++++..|..++.  +++.++.+.
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~   38 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDP   38 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCC
Confidence            46999999999999999999999886  677776654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=93.33  E-value=0.53  Score=42.62  Aligned_cols=37  Identities=30%  Similarity=0.297  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+||+|+|. |.+|.++|..|...+....+.=+|.+.
T Consensus         2 ~~~~v~IvG~-GliG~s~a~~l~~~g~~v~i~g~d~~~   38 (279)
T COG0287           2 ASMKVGIVGL-GLMGGSLARALKEAGLVVRIIGRDRSA   38 (279)
T ss_pred             CCcEEEEECC-chHHHHHHHHHHHcCCeEEEEeecCcH
Confidence            3579999998 999999999999999966665555554

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=93.28  E-value=0.13  Score=46.49  Aligned_cols=33  Identities=30%  Similarity=0.430  Sum_probs=28.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      |||.|+||+|+||++++..|..++.  +++++|..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~   33 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNL   33 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecC
Confidence            6899999999999999999998874  78888753

>PLN00198 anthocyanidin reductase; Provisional

Probab=93.27  E-value=0.14  Score=46.42  Aligned_cols=36  Identities=19%  Similarity=0.099  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+||+|+||++++..|..++.  +++.++.+.
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~   43 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDP   43 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCC
Confidence            457999999999999999999999885  676666554

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.27  E-value=0.15  Score=40.74  Aligned_cols=36  Identities=19%  Similarity=0.389  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|||| |..|..+++.|...+ +++|.+++.+.
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g-~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALG-AKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTT-SSEEEEEESSH
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcC-CCEEEEEECCH
Confidence            5679999999 999999999999997 56899999875

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=93.23  E-value=0.12  Score=47.41  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=29.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|+|||| |-+|.++|+.|++++.  +++|+|...
T Consensus         4 ~dv~IIGg-Gi~G~s~A~~L~~~g~--~V~lie~~~   36 (376)
T PRK11259          4 YDVIVIGL-GSMGSAAGYYLARRGL--RVLGLDRFM   36 (376)
T ss_pred             ccEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccc
Confidence            46999999 9999999999999985  899999764

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.17  E-value=0.12  Score=48.03  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.+|..|+..|+ .+|.|+|.+.
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDY   58 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence            469999999 9999999999999995 7899999874

>PRK07877 hypothetical protein; Provisional

Probab=93.17  E-value=0.089  Score=53.59  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=32.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|+|+ | +|+++|..|+..|++.+|.|+|-+.
T Consensus       107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~  141 (722)
T PRK07877        107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDT  141 (722)
T ss_pred             cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence            469999999 9 9999999999999989999999865

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=93.16  E-value=0.11  Score=49.87  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|||| |.+|..+|+.|+.+++  ++.|+|..+
T Consensus         3 ~dVvVIGG-GlAGleAAlaLAr~Gl--~V~LiE~rp   35 (436)
T PRK05335          3 KPVNVIGA-GLAGSEAAWQLAKRGV--PVELYEMRP   35 (436)
T ss_pred             CcEEEECC-CHHHHHHHHHHHhCCC--cEEEEEccC
Confidence            58999999 9999999999999997  799999765

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=93.16  E-value=0.12  Score=47.87  Aligned_cols=35  Identities=20%  Similarity=0.371  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+|.|||| |-+|.++|+.|..+++  +++|+|..+
T Consensus         5 ~~~dV~IvGa-G~aGl~~A~~La~~G~--~v~liE~~~   39 (392)
T PRK08773          5 SRRDAVIVGG-GVVGAACALALADAGL--SVALVEGRE   39 (392)
T ss_pred             CCCCEEEECc-CHHHHHHHHHHhcCCC--EEEEEeCCC
Confidence            4468999999 9999999999999997  799999865

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.14  E-value=0.18  Score=40.45  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|||+ |.+|.+++..|...+ ..++.++|.+.
T Consensus        18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~   53 (155)
T cd01065          18 KGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTL   53 (155)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCH
Confidence            4579999999 999999999999887 56899999986

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=93.10  E-value=0.14  Score=45.45  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=31.6

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCc----c-----eEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLV----D-----HLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~----~-----elvLiDi~~   69 (248)
                      .+..||.|||+ |.+|+.++..|+..+++    .     +|.|+|-+.
T Consensus         9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736         9 SRPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             hCCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            36679999999 99999999999987531    1     899999765

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.05  E-value=0.12  Score=47.35  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -+||+|||| |..|.-+|+.++..++  +++|+|+++
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~   36 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISP   36 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCH
Confidence            369999999 9999999999999666  899999996

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=93.03  E-value=0.12  Score=44.11  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            469999999 8899999999999996 7899999865

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08013 oxidoreductase; Provisional

Probab=93.00  E-value=0.13  Score=48.14  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|||| |-+|.++|+.|...++  +++|+|..+
T Consensus         3 ~~dV~IvGa-GpaGl~~A~~La~~G~--~v~viE~~~   36 (400)
T PRK08013          3 SVDVVIAGG-GMVGLAVACGLQGSGL--RVAVLEQRV   36 (400)
T ss_pred             cCCEEEECc-CHHHHHHHHHHhhCCC--EEEEEeCCC
Confidence            358999999 9999999999999997  899999865

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=92.96  E-value=0.17  Score=46.19  Aligned_cols=35  Identities=31%  Similarity=0.316  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+|++|++|++++..|..++.  +++.+|.++
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~   38 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDP   38 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCC
Confidence            47999999999999999999999874  788888765

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=92.94  E-value=0.14  Score=43.77  Aligned_cols=35  Identities=23%  Similarity=0.403  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|+|+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus        21 ~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            469999999 8899999999999995 7899999865

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK06847 hypothetical protein; Provisional

Probab=92.94  E-value=0.14  Score=46.99  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++.+|+|||| |-.|.++|..|...++  +++++|...
T Consensus         3 ~~~~V~IVGa-G~aGl~~A~~L~~~g~--~v~v~E~~~   37 (375)
T PRK06847          3 AVKKVLIVGG-GIGGLSAAIALRRAGI--AVDLVEIDP   37 (375)
T ss_pred             CcceEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            3569999999 9999999999999987  789999765

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=92.93  E-value=0.17  Score=46.38  Aligned_cols=37  Identities=27%  Similarity=0.141  Sum_probs=30.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+||.|+|++|+||++++..|..++.  ++++++.+.
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~   44 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDP   44 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            3568999999999999999999999885  677776543

>PLN02240 UDP-glucose 4-epimerase

Probab=92.92  E-value=0.17  Score=45.91  Aligned_cols=36  Identities=22%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ..++||.|+|++|+||++++..|..++.  +++++|..
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~   38 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNL   38 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCC
Confidence            3457999999999999999999998884  78888853

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=92.92  E-value=0.17  Score=47.49  Aligned_cols=42  Identities=19%  Similarity=0.204  Sum_probs=34.9

Q ss_pred             cccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.....+.+||.|+||+|+||..++..|..++.  ++++++.+.
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~   94 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREK   94 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEech
Confidence            444445678999999999999999999999885  788888765

>PRK08223 hypothetical protein; Validated

Probab=92.89  E-value=0.14  Score=46.61  Aligned_cols=35  Identities=29%  Similarity=0.468  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        27 ~s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~   61 (287)
T PRK08223         27 NSRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV   61 (287)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            469999999 9999999999999996 6899999875

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.87  E-value=0.14  Score=46.61  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=29.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .|||+|+|+ |.||..+|..|...+.  ++.|++..
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRD   34 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEec
Confidence            479999999 9999999999998874  79999874

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=92.84  E-value=0.16  Score=46.15  Aligned_cols=37  Identities=16%  Similarity=0.352  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+||+|+||++++..|+.++-..+++++|.+.
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~   40 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDE   40 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCCh
Confidence            4689999999999999999999886334788898765

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=92.80  E-value=0.14  Score=47.47  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .+|.|||| |-+|.++|..|.++++  +++|+|..
T Consensus         4 ~dv~IvGg-G~aGl~~A~~L~~~G~--~v~l~E~~   35 (384)
T PRK08849          4 YDIAVVGG-GMVGAATALGFAKQGR--SVAVIEGG   35 (384)
T ss_pred             ccEEEECc-CHHHHHHHHHHHhCCC--cEEEEcCC
Confidence            58999999 9999999999999997  89999964

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=92.78  E-value=0.17  Score=46.11  Aligned_cols=34  Identities=24%  Similarity=0.424  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +||.|+|++|+||++++..|..++. .+++++|..
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~   35 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETS-DAVVVVDKL   35 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecC
Confidence            5899999999999999999999873 456677753

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.70  E-value=0.18  Score=45.08  Aligned_cols=37  Identities=14%  Similarity=0.217  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCC--cceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPL--VDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l--~~elvLiDi~~   69 (248)
                      +.|||++||+ |++|.+++..|...+.  ..++..+|.++
T Consensus         2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~   40 (279)
T PRK07679          2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSN   40 (279)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCC
Confidence            4579999998 9999999999998873  25788898754

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.69  E-value=0.22  Score=44.62  Aligned_cols=37  Identities=16%  Similarity=0.313  Sum_probs=32.6

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~   74 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE   74 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            3457899999999999999999999885  899999876

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=92.68  E-value=0.15  Score=45.37  Aligned_cols=35  Identities=31%  Similarity=0.467  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .-+|+|+|. |.||+-++-+|+..|+ .+|.|+|-+.
T Consensus        30 ~~~V~VvGi-GGVGSw~veALaRsGi-g~itlID~D~   64 (263)
T COG1179          30 QAHVCVVGI-GGVGSWAVEALARSGI-GRITLIDMDD   64 (263)
T ss_pred             hCcEEEEec-CchhHHHHHHHHHcCC-CeEEEEeccc
Confidence            359999999 9999999999999995 7899999865

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=92.68  E-value=0.15  Score=49.79  Aligned_cols=34  Identities=32%  Similarity=0.428  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -.||+|||+ |..|..+|..++..++  +++|+|+++
T Consensus         7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~   40 (507)
T PRK08268          7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARA   40 (507)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCH
Confidence            358999999 9999999999999997  899999987

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=92.66  E-value=0.24  Score=42.58  Aligned_cols=47  Identities=19%  Similarity=0.340  Sum_probs=37.3

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      .+.++|.|+|++|++|.+++..|+.++.  +++++|.+.  ......++.+
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~   58 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEA   58 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHh
Confidence            3567999999999999999999999875  899999876  3334445544

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=92.58  E-value=0.3  Score=41.59  Aligned_cols=56  Identities=25%  Similarity=0.298  Sum_probs=32.9

Q ss_pred             EEEEEcCCCccHHHHHH--HHHhCCCc--ceEEEEecCC-----chhhHhhhcCc-cCCCeEEEEcC
Q psy14621         35 KVMVAGASGGIGQPLSL--LLKQSPLV--DHLSLYDIVH-----TPGVAADLSHI-ESKAHVQAFNG   91 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~--~l~~~~l~--~elvLiDi~~-----a~g~a~DL~~~-~~~~~v~~~~~   91 (248)
                      ||+|||| |.+-.+...  .+...+-.  +||+|+|+++     ....+.-+... ..+.+|..+++
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd   66 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTD   66 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESS
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            8999999 877555332  34443333  4999999998     22233333222 23567777765

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.54  E-value=0.28  Score=35.97  Aligned_cols=35  Identities=29%  Similarity=0.464  Sum_probs=30.3

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      ....|++|+|+ |.+|..++..|.+.+ ..++.++|.
T Consensus        21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~-~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGA-GEVGKGIAKLLADEG-GKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            34569999999 999999999999985 568999987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.53  E-value=0.14  Score=47.26  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=29.3

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++||+|||+ |..|.++|..|...+   +++++..++
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~   39 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSA   39 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCH
Confidence            45689999999 999999999999887   366777654

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=92.52  E-value=0.15  Score=47.11  Aligned_cols=34  Identities=26%  Similarity=0.461  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhC---CCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQS---PLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~---~l~~elvLiDi~   68 (248)
                      ++.+|.|||| |-.|.++|+.|..+   ++  .++|+|..
T Consensus         2 ~~~dv~IvGa-G~aGl~~A~~L~~~~~~G~--~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGG-GMAGATLALALSRLSHGGL--PVALIEAF   38 (395)
T ss_pred             CcCCEEEECc-CHHHHHHHHHhhhcccCCC--EEEEEeCC
Confidence            4568999999 99999999999988   87  89999984

>PLN02650 dihydroflavonol-4-reductase

Probab=92.48  E-value=0.19  Score=45.84  Aligned_cols=36  Identities=28%  Similarity=0.194  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|+||++++-.|+.++.  ++++++.+.
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~   39 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDP   39 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCc
Confidence            446999999999999999999999875  777776654

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=92.48  E-value=0.18  Score=46.26  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|.|+||.||++++..|...+.  +++.+|-..
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~   34 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLS   34 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCC
Confidence            6899999999999999999999987  899999754

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=92.44  E-value=0.21  Score=44.18  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=29.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|.|+|++|+||.+++..|.+++.  +++.+|...
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~   34 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLR   34 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCC
Confidence            499999999999999999999865  888888754

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=92.40  E-value=0.24  Score=41.88  Aligned_cols=36  Identities=31%  Similarity=0.527  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++|.|+||+|.+|..++..|..++.  ++++++.++
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~   39 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE   39 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            346899999999999999999999986  699999876

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.39  E-value=0.2  Score=44.57  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||.|+|++|++|.+++..|..++.  +++.+|.++
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~   34 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPT   34 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecC
Confidence            5899999999999999999999884  788888764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.35  E-value=0.16  Score=45.53  Aligned_cols=35  Identities=14%  Similarity=0.213  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCC--cceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPL--VDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l--~~elvLiDi~~   69 (248)
                      +||++||+ |++|.+++..|...+.  ..+|..+|.++
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~   39 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNV   39 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCH
Confidence            58999999 9999999999998885  35799999866

>PRK06194 hypothetical protein; Provisional

Probab=92.34  E-value=0.26  Score=43.38  Aligned_cols=35  Identities=20%  Similarity=0.361  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++|.|+||+|+||.++|..|..++.  +++++|.+.
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~   40 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQ   40 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            46899999999999999999999985  799999875

>PRK08163 salicylate hydroxylase; Provisional

Probab=92.34  E-value=0.18  Score=46.60  Aligned_cols=35  Identities=20%  Similarity=0.323  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+|.|||| |-.|.++|..|...++  ++.++|..+
T Consensus         3 ~~~~V~IvGa-GiaGl~~A~~L~~~g~--~v~v~Er~~   37 (396)
T PRK08163          3 KVTPVLIVGG-GIGGLAAALALARQGI--KVKLLEQAA   37 (396)
T ss_pred             CCCeEEEECC-cHHHHHHHHHHHhCCC--cEEEEeeCc
Confidence            3469999999 9999999999999997  799999865

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=92.33  E-value=0.18  Score=47.98  Aligned_cols=36  Identities=14%  Similarity=0.213  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||+ |+-|.++|..|...+--.+|.|+|..+
T Consensus         1 m~~VVIIGg-G~aG~~aA~~l~~~~~~~~I~li~~~~   36 (438)
T PRK13512          1 MPKIIVVGA-VAGGATCASQIRRLDKESDIIIFEKDR   36 (438)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            469999999 999999999998764445899999874

>PRK07326 short chain dehydrogenase; Provisional

Probab=92.30  E-value=0.26  Score=41.86  Aligned_cols=35  Identities=17%  Similarity=0.270  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+||+|.+|..++..|+.++.  ++++++.++
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~   40 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQ   40 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCH
Confidence            46899999999999999999998875  799999876

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=92.27  E-value=0.16  Score=45.96  Aligned_cols=33  Identities=18%  Similarity=0.204  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||. |..|.++|..|...+.  ++.++|.++
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~   33 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQ   33 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            58999999 9999999999999885  889999986

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=92.26  E-value=0.2  Score=50.36  Aligned_cols=37  Identities=24%  Similarity=0.305  Sum_probs=30.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~   69 (248)
                      .+++||.|+||+|+||++++..|... +.  +++.+|.+.
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~  350 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGS  350 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCc
Confidence            56789999999999999999988874 44  777777644

>PLN02697 lycopene epsilon cyclase

Probab=92.26  E-value=0.25  Score=48.66  Aligned_cols=55  Identities=22%  Similarity=0.249  Sum_probs=44.0

Q ss_pred             hhhhhhh------ccCccccccccccC--CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         11 QPLSLLL------KQSPLVDHLSLYDI--NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        11 ~~~~~~~------~~~~~~~~~~~~~~--~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      -+|.+++      +|.+|....+..+.  ...-|.|||| |-.|.++|..|+..++  +++|+|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGa-GPAGLalA~~Lak~Gl--~V~LIe~~  140 (529)
T PLN02697         78 LLFVQMQANKSMDEQSKIADKLPPISIGDGTLDLVVIGC-GPAGLALAAESAKLGL--NVGLIGPD  140 (529)
T ss_pred             hhHHHHHhcCCccccccccccCCCCCcccCcccEEEECc-CHHHHHHHHHHHhCCC--cEEEecCc
Confidence            4567766      67778877766642  3468999999 9999999999999987  78899864

>PLN02688 pyrroline-5-carboxylate reductase

Probab=92.16  E-value=0.18  Score=44.38  Aligned_cols=35  Identities=23%  Similarity=0.205  Sum_probs=29.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCC--cceEEEE-ecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPL--VDHLSLY-DIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l--~~elvLi-Di~~   69 (248)
                      |||++||+ |++|.+++..|...+.  ..+++.+ |.++
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~   38 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNP   38 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCH
Confidence            68999998 9999999999998875  3478888 7765

>PRK14982 acyl-ACP reductase; Provisional

Probab=92.15  E-value=0.23  Score=46.29  Aligned_cols=39  Identities=31%  Similarity=0.394  Sum_probs=32.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+..+|.|+||+|++|+.++-.|..+.-+.+|++++.++
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~  191 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQ  191 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCH
Confidence            455799999999999999999998653356899999875

>PRK06184 hypothetical protein; Provisional

Probab=92.10  E-value=0.2  Score=48.33  Aligned_cols=34  Identities=24%  Similarity=0.434  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|||| |-+|.++|..|..+++  +++|+|..+
T Consensus         3 ~~dVlIVGa-GpaGl~~A~~La~~Gi--~v~viE~~~   36 (502)
T PRK06184          3 TTDVLIVGA-GPTGLTLAIELARRGV--SFRLIEKAP   36 (502)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            468999999 9999999999999998  799999865

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.09  E-value=0.19  Score=44.39  Aligned_cols=36  Identities=17%  Similarity=0.126  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCc-ceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLV-DHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~-~elvLiDi~~   69 (248)
                      ++||+|||+ |++|.+++..|...+.. .++.++|.++
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~   38 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSP   38 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence            479999999 99999999999887632 4788999876

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=92.08  E-value=0.2  Score=45.90  Aligned_cols=32  Identities=16%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .|+|||+ |-+|.++|+.|++.+.  +++|+|...
T Consensus         2 dv~IIG~-Gi~G~s~A~~L~~~G~--~V~vle~~~   33 (365)
T TIGR03364         2 DLIIVGA-GILGLAHAYAAARRGL--SVTVIERSS   33 (365)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            5899999 9999999999999875  799999764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK07680 late competence protein ComER; Validated

Probab=92.08  E-value=0.18  Score=44.90  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCc--ceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLV--DHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~--~elvLiDi~~   69 (248)
                      |||+|||+ |++|.+++..|...+.+  .++.++|.++
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~   37 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTP   37 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCH
Confidence            58999998 99999999999988743  4799999876

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=92.07  E-value=0.2  Score=46.84  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|.|||| |-+|.++|..|.++++  ++.|+|..+
T Consensus         3 ~dV~IVGa-G~aGl~~A~~L~~~G~--~v~viE~~~   35 (390)
T TIGR02360         3 TQVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQS   35 (390)
T ss_pred             ceEEEECc-cHHHHHHHHHHHHCCC--CEEEEECCC
Confidence            58999999 9999999999999997  789999765

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=92.04  E-value=0.23  Score=46.29  Aligned_cols=34  Identities=29%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|||| |-.|.++|..|...++  ++.|+|..+
T Consensus        18 ~~dV~IvGa-G~aGl~~A~~L~~~G~--~v~v~E~~~   51 (415)
T PRK07364         18 TYDVAIVGG-GIVGLTLAAALKDSGL--RIALIEAQP   51 (415)
T ss_pred             ccCEEEECc-CHHHHHHHHHHhcCCC--EEEEEecCC
Confidence            468999999 9999999999999997  899999765

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=92.03  E-value=0.21  Score=46.19  Aligned_cols=35  Identities=20%  Similarity=0.401  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|||+ |-+|.++|..|...++  +++|+|..+
T Consensus         4 ~~~dViIvGg-G~aGl~~A~~La~~G~--~V~liE~~~   38 (391)
T PRK08020          4 QPTDIAIVGG-GMVGAALALGLAQHGF--SVAVLEHAA   38 (391)
T ss_pred             ccccEEEECc-CHHHHHHHHHHhcCCC--EEEEEcCCC
Confidence            4569999999 9999999999999987  799999754

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=92.03  E-value=0.27  Score=42.69  Aligned_cols=36  Identities=11%  Similarity=0.288  Sum_probs=28.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCC--cceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPL--VDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l--~~elvLiDi~   68 (248)
                      +.+||+|||+ |++|.+++..+...+.  ..+++.++.+
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~   40 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRS   40 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence            4579999998 9999999999887753  3457777764

>PRK07588 hypothetical protein; Provisional

Probab=92.03  E-value=0.19  Score=46.58  Aligned_cols=33  Identities=27%  Similarity=0.361  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||.|||+ |-.|.++|..|+++++  ++.|+|..+
T Consensus         1 ~~V~IVGg-G~aGl~~A~~L~~~G~--~v~v~E~~~   33 (391)
T PRK07588          1 MKVAISGA-GIAGPTLAYWLRRYGH--EPTLIERAP   33 (391)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCC--ceEEEeCCC
Confidence            48999999 9999999999999987  799999765

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=92.02  E-value=0.17  Score=46.85  Aligned_cols=32  Identities=16%  Similarity=0.328  Sum_probs=29.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .+|.|||| |-+|.++|..|...++  ++.|+|..
T Consensus         2 ~dV~IvGg-G~~Gl~~A~~L~~~G~--~v~l~E~~   33 (374)
T PRK06617          2 SNTVILGC-GLSGMLTALSFAQKGI--KTTIFESK   33 (374)
T ss_pred             ccEEEECC-CHHHHHHHHHHHcCCC--eEEEecCC
Confidence            57999999 9999999999999997  89999964

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=92.01  E-value=0.19  Score=46.77  Aligned_cols=33  Identities=12%  Similarity=0.305  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhC--CCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQS--PLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~--~l~~elvLiDi~~   69 (248)
                      ..|+|||| |-+|.++|+.|+.+  +.  +++|+|..+
T Consensus         3 ~dVvIIGg-Gi~G~s~A~~La~~~~g~--~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGG-GIVGLSTAMQLQERYPGA--RIAVLEKES   37 (393)
T ss_pred             ccEEEECC-cHHHHHHHHHHHHhCCCC--eEEEEeCCC
Confidence            48999999 99999999999988  64  899999864

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=91.99  E-value=0.2  Score=44.24  Aligned_cols=33  Identities=33%  Similarity=0.486  Sum_probs=30.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||.|||+ |.+|..++..|+..|+ .+|.++|-+.
T Consensus         1 kVlvvG~-GGlG~eilk~La~~Gv-g~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLALMGF-GQIHVIDMDT   33 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899999 9999999999999995 7999999865

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.98  E-value=0.19  Score=51.21  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -.||+|||| |..|..+|+.++..|+  +++|+|+++
T Consensus       313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~  346 (715)
T PRK11730        313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQ  346 (715)
T ss_pred             cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCH
Confidence            368999999 9999999999999997  899999987

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=91.97  E-value=0.25  Score=42.93  Aligned_cols=36  Identities=22%  Similarity=0.185  Sum_probs=29.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+||+|++|..++-.|..++.  +++++..+.
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~   51 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDV   51 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCH
Confidence            467999999999999999999998874  666665543

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=91.97  E-value=0.19  Score=49.13  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -.||+|||+ |..|..+|..++..+.  +++|+|+++
T Consensus         5 ~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~   38 (503)
T TIGR02279         5 VVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRA   38 (503)
T ss_pred             ccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCH
Confidence            358999999 9999999999999997  899999987

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=91.95  E-value=0.27  Score=44.16  Aligned_cols=36  Identities=25%  Similarity=0.103  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|+||++++..|..++.  ++++++.+.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~   39 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDP   39 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCC
Confidence            457999999999999999999999885  676666554

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=91.93  E-value=0.24  Score=42.70  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |+|.|+||+|.+|.++|..|..++.  +++++|.++
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~   34 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ   34 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            5899999999999999999999885  799999875

>PRK07045 putative monooxygenase; Reviewed

Probab=91.92  E-value=0.23  Score=46.06  Aligned_cols=35  Identities=23%  Similarity=0.349  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|||| |-.|.++|..|.++++  +++|+|..+
T Consensus         4 ~~~~V~IiGg-GpaGl~~A~~L~~~G~--~v~v~E~~~   38 (388)
T PRK07045          4 NPVDVLINGS-GIAGVALAHLLGARGH--SVTVVERAA   38 (388)
T ss_pred             ceeEEEEECC-cHHHHHHHHHHHhcCC--cEEEEeCCC
Confidence            4569999999 9999999999999998  799999766

>PRK07102 short chain dehydrogenase; Provisional

Probab=91.89  E-value=0.24  Score=42.49  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++|.|+||+|.+|..++..|+.++.  +++++|.++
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~   35 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDV   35 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCH
Confidence            35899999999999999999999985  789999876

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=91.87  E-value=0.23  Score=46.28  Aligned_cols=35  Identities=40%  Similarity=0.641  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        28 ~~~VlivG~-GGlGs~~a~~La~~Gv-g~i~lvD~D~   62 (355)
T PRK05597         28 DAKVAVIGA-GGLGSPALLYLAGAGV-GHITIIDDDT   62 (355)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            469999999 9999999999999996 6899999875

>PRK07538 hypothetical protein; Provisional

Probab=91.85  E-value=0.21  Score=46.91  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |+|.|||| |-.|.++|..|.++++  +++++|..+
T Consensus         1 ~dV~IVGa-G~aGl~~A~~L~~~G~--~v~v~E~~~   33 (413)
T PRK07538          1 MKVLIAGG-GIGGLTLALTLHQRGI--EVVVFEAAP   33 (413)
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--cEEEEEcCC
Confidence            58999999 9999999999999997  799999865

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=91.84  E-value=0.34  Score=41.81  Aligned_cols=36  Identities=22%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+++.|+||+|.+|.++|..|+.++.  ++++.|.++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~   43 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA--EIIINDITA   43 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCH
Confidence            456899999999999999999999885  899999876

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=91.84  E-value=0.2  Score=51.05  Aligned_cols=35  Identities=20%  Similarity=0.255  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .-.||+|||| |..|..+|+.++..++  +++|+|+++
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~  346 (714)
T TIGR02437       312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQ  346 (714)
T ss_pred             ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCH
Confidence            4469999999 9999999999999998  899999987

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=91.80  E-value=0.27  Score=42.05  Aligned_cols=36  Identities=19%  Similarity=0.476  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++++|.|+||+|+||..++..|+.++.  +++++|.+.
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~   37 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNR   37 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence            356899999999999999999999886  799999876

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>KOG1430|consensus

Probab=91.79  E-value=0.27  Score=46.19  Aligned_cols=38  Identities=29%  Similarity=0.353  Sum_probs=34.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++.+|.|+|++|++|.++...|..++..-||.++|..+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~   40 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTP   40 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCc
Confidence            45699999999999999999999999888999999976

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=91.77  E-value=0.22  Score=47.04  Aligned_cols=35  Identities=14%  Similarity=0.254  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |+.|.++|..|...+.--++.|+|.++
T Consensus         1 ~~vvIIGg-G~aGl~aA~~l~~~~~~~~Vtli~~~~   35 (444)
T PRK09564          1 MKIIIIGG-TAAGMSAAAKAKRLNKELEITVYEKTD   35 (444)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence            58999999 999999999998765444899999875

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=91.77  E-value=0.21  Score=45.24  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||. |.+|+++|..|...+.  ++.++|.++
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~   33 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNP   33 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCH
Confidence            58999999 9999999999999885  799999976

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=91.76  E-value=0.22  Score=45.06  Aligned_cols=33  Identities=24%  Similarity=0.479  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||. |++|.++|..|...+.  ++.++|+++
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~   34 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNP   34 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCH
Confidence            49999999 9999999999999885  899999986

>PRK09242 tropinone reductase; Provisional

Probab=91.75  E-value=0.59  Score=40.37  Aligned_cols=56  Identities=14%  Similarity=0.185  Sum_probs=40.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCCCeEEEE
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAF   89 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~~~v~~~   89 (248)
                      +.+++.|+|++|.||..++..|+.++.  ++++++.+.  .+....++....+..++..+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~   65 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGL   65 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEE
Confidence            456899999999999999999999985  799999876  33444455443223344433

>PRK05717 oxidoreductase; Validated

Probab=91.70  E-value=0.32  Score=42.07  Aligned_cols=35  Identities=26%  Similarity=0.370  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+|++|.||.++|..|..++.  +++++|.++
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~   44 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDR   44 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCH
Confidence            45899999999999999999999884  899999765

>PRK06185 hypothetical protein; Provisional

Probab=91.64  E-value=0.23  Score=46.17  Aligned_cols=34  Identities=21%  Similarity=0.398  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|+|||+ |-+|.++|+.|+..++  +++|+|.++
T Consensus         6 ~~dV~IvGg-G~~Gl~~A~~La~~G~--~v~liE~~~   39 (407)
T PRK06185          6 TTDCCIVGG-GPAGMMLGLLLARAGV--DVTVLEKHA   39 (407)
T ss_pred             cccEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCC
Confidence            358999999 9999999999999987  799999764

>PRK06057 short chain dehydrogenase; Provisional

Probab=91.60  E-value=0.32  Score=42.08  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.+|.+++..++.++.  +++++|.+.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            346899999999999999999999885  799999876

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=91.60  E-value=0.5  Score=40.82  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|.|+|++|.||.++|..|+.++.  +++++|.+.
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~   36 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINS   36 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            4799999999999999999999985  899999876

>PRK12828 short chain dehydrogenase; Provisional

Probab=91.53  E-value=0.38  Score=40.56  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.||..++..|++++.  +++++|.++
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~   41 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA   41 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence            356899999999999999999999985  699999876

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.52  E-value=0.37  Score=41.33  Aligned_cols=35  Identities=26%  Similarity=0.455  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|+|++|.+|.+++..|..++.  +++++|.++
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~   38 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLND   38 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            46899999999999999999999886  899999876

>PLN02253 xanthoxin dehydrogenase

Probab=91.50  E-value=0.37  Score=42.32  Aligned_cols=41  Identities=17%  Similarity=0.351  Sum_probs=33.9

Q ss_pred             ccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         27 SLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        27 ~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +....+.+++.|+|++|.||.++|..|+.++.  +++++|.++
T Consensus        12 ~~~~l~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~   52 (280)
T PLN02253         12 PSQRLLGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQD   52 (280)
T ss_pred             cccccCCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            33334456899999999999999999999885  799999865

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=91.49  E-value=0.22  Score=45.65  Aligned_cols=32  Identities=28%  Similarity=0.442  Sum_probs=26.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      |||+|+|| |.||+.+++.|.+.+  .++.++-..
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g--~~V~~~~R~   32 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAG--HDVTLLVRS   32 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCC--CeEEEEecH
Confidence            69999999 999999999999999  345555443

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=91.46  E-value=0.3  Score=45.16  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+||+|||. |.+|.++|..|...+.  +++.+|.++
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~  179 (330)
T PRK12480        144 VKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYP  179 (330)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCh
Confidence            35679999999 9999999999998775  899999875

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=91.45  E-value=0.21  Score=47.18  Aligned_cols=36  Identities=36%  Similarity=0.629  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        41 ~~~~VlviG~-GGlGs~va~~La~~Gv-g~i~lvD~D~   76 (392)
T PRK07878         41 KNARVLVIGA-GGLGSPTLLYLAAAGV-GTLGIVEFDV   76 (392)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence            3469999999 9999999999999995 6899999764

>PRK08251 short chain dehydrogenase; Provisional

Probab=91.45  E-value=0.57  Score=40.12  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|.|+|++|.+|.++|..|..++.  ++++++.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~   36 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRT   36 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            5799999999999999999999884  799999876

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.42  E-value=0.33  Score=45.62  Aligned_cols=43  Identities=16%  Similarity=0.302  Sum_probs=35.1

Q ss_pred             cccccCCCcEEEEEcCCCccHHHHHHHHHhCCC-----cceEEEEecCC
Q psy14621         26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPL-----VDHLSLYDIVH   69 (248)
Q Consensus        26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l-----~~elvLiDi~~   69 (248)
                      |+......+||+|||+ |.=|+++|..|..++.     -.++.|+..++
T Consensus         4 ~~~~~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~   51 (365)
T PTZ00345          4 FQKLRCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEE   51 (365)
T ss_pred             hhhcccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence            5555556789999999 9999999999998862     24888988876

>KOG1371|consensus

Probab=91.40  E-value=0.27  Score=45.46  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|-|+|+||+||+++++.|..++.  +++.+|-..
T Consensus         3 ~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~   36 (343)
T KOG1371|consen    3 KHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLN   36 (343)
T ss_pred             cEEEEecCCcceehHHHHHHHhCCC--cEEEEeccc
Confidence            5799999999999999999999986  788888543

>PRK07411 hypothetical protein; Validated

Probab=91.39  E-value=0.23  Score=47.01  Aligned_cols=35  Identities=31%  Similarity=0.602  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        38 ~~~VlivG~-GGlG~~va~~La~~Gv-g~l~lvD~D~   72 (390)
T PRK07411         38 AASVLCIGT-GGLGSPLLLYLAAAGI-GRIGIVDFDV   72 (390)
T ss_pred             cCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence            469999999 9999999999999996 7999999864

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=91.35  E-value=0.21  Score=45.75  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=30.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||.|+|+ |.+|+.+|..|+.-|+ .+|.|+|-+.
T Consensus         1 kVLIvGa-GGLGs~vA~~La~aGV-g~ItlvD~D~   33 (307)
T cd01486           1 KCLLLGA-GTLGCNVARNLLGWGV-RHITFVDSGK   33 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence            7999999 9999999999999995 6899999764

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK14851 hypothetical protein; Provisional

Probab=91.34  E-value=0.22  Score=50.48  Aligned_cols=36  Identities=22%  Similarity=0.447  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|+|+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus        42 ~~~~VlIvG~-GGlGs~va~~Lar~GV-G~l~LvD~D~   77 (679)
T PRK14851         42 AEAKVAIPGM-GGVGGVHLITMVRTGI-GRFHIADFDQ   77 (679)
T ss_pred             hcCeEEEECc-CHHHHHHHHHHHHhCC-CeEEEEcCCE
Confidence            3569999999 9999999999999997 8999999654

>PRK05875 short chain dehydrogenase; Provisional

Probab=91.33  E-value=0.61  Score=40.72  Aligned_cols=36  Identities=17%  Similarity=0.247  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.||.+++..|+.++.  ++++++.+.
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~   41 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNP   41 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            457999999999999999999999986  799999865

>PRK06914 short chain dehydrogenase; Provisional

Probab=91.30  E-value=0.64  Score=40.68  Aligned_cols=35  Identities=23%  Similarity=0.174  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..|.|+||+|.+|.+++..|+.++.  ++++++.+.
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~   37 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP   37 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            34689999999999999999999985  788888765

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=91.29  E-value=0.38  Score=41.86  Aligned_cols=36  Identities=17%  Similarity=0.328  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..++.|+||+|.+|.++|..|+..+.  +++++|.+.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456999999999999999999999985  799999865

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=91.24  E-value=0.27  Score=46.28  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||.|||| |-.|+++|..|+..++  +++|+|...
T Consensus         1 ~~VvIVGa-GPAG~~aA~~la~~G~--~V~llE~~~   33 (398)
T TIGR02028         1 LRVAVVGG-GPAGASAAETLASAGI--QTFLLERKP   33 (398)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--cEEEEecCC
Confidence            48999999 9999999999999997  799999754

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=91.23  E-value=0.26  Score=44.14  Aligned_cols=33  Identities=33%  Similarity=0.421  Sum_probs=29.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||+ |.+|..+|..|...+.  ++.++|.++
T Consensus         3 ~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~   35 (296)
T PRK11559          3 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNP   35 (296)
T ss_pred             ceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCH
Confidence            58999999 9999999999998875  788999876

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=91.23  E-value=0.28  Score=49.87  Aligned_cols=35  Identities=20%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHh-CCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQ-SPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~-~~l~~elvLiDi~~   69 (248)
                      +..||+|||| |..|..+|+.++. .++  +++|+|+++
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~  338 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINP  338 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCH
Confidence            3469999999 9999999999884 787  899999987

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=91.23  E-value=0.28  Score=43.35  Aligned_cols=33  Identities=12%  Similarity=0.318  Sum_probs=28.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||.|+||+|+||..++..|..++.  ++..+..++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~   33 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS   33 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            589999999999999999998875  677777665

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06126 hypothetical protein; Provisional

Probab=91.19  E-value=0.28  Score=47.83  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|||| |-+|.++|+.|..+++  +++|+|...
T Consensus         7 ~~~VlIVGa-GpaGL~~Al~La~~G~--~v~viEr~~   40 (545)
T PRK06126          7 ETPVLIVGG-GPVGLALALDLGRRGV--DSILVERKD   40 (545)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            468999999 9999999999999997  799999765

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.16  E-value=0.38  Score=41.43  Aligned_cols=35  Identities=26%  Similarity=0.498  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+|++|.+|.+++..|+.++.  ++++++.++
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~   41 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQ   41 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCh
Confidence            46899999999999999999999986  799999877

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.15  E-value=0.33  Score=43.53  Aligned_cols=36  Identities=17%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCc--ceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLV--DHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~--~elvLiDi~~   69 (248)
                      ++||+|||+ |++|.+++..|...+..  .+++++|.++
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~   38 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSK   38 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCc
Confidence            368999998 99999999999988743  5789998764

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=91.15  E-value=0.28  Score=45.65  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+|.|||| |-+|.++|+.|.+.++  +++++|..+
T Consensus         2 ~~dV~IvGa-GpaGl~~A~~L~~~G~--~v~v~E~~~   35 (392)
T PRK08243          2 RTQVAIIGA-GPAGLLLGQLLHLAGI--DSVVLERRS   35 (392)
T ss_pred             cceEEEECC-CHHHHHHHHHHHhcCC--CEEEEEcCC
Confidence            358999999 9999999999999997  789999764

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=91.13  E-value=0.31  Score=47.94  Aligned_cols=34  Identities=18%  Similarity=0.236  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|.|||+ |-+|.++|+.|+.+++  +++|+|.+.
T Consensus         6 ~~DVvIIGG-Gi~G~~iA~~La~rG~--~V~LlEk~d   39 (546)
T PRK11101          6 ETDVIIIGG-GATGAGIARDCALRGL--RCILVERHD   39 (546)
T ss_pred             cccEEEECc-CHHHHHHHHHHHHcCC--eEEEEECCC
Confidence            357999999 9999999999999997  899999865

>PRK08177 short chain dehydrogenase; Provisional

Probab=91.13  E-value=0.4  Score=40.70  Aligned_cols=34  Identities=21%  Similarity=0.172  Sum_probs=30.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+|++|.+|.++|..|+.++.  +++++|.++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            4799999999999999999999985  899999876

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=91.11  E-value=0.42  Score=41.23  Aligned_cols=37  Identities=16%  Similarity=0.279  Sum_probs=32.8

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...++|.|+|++|.||.+++..|+.++.  +++++|.++
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~   45 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNA   45 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCH
Confidence            3467999999999999999999999886  899999876

>PRK12827 short chain dehydrogenase; Provisional

Probab=91.10  E-value=0.39  Score=40.89  Aligned_cols=35  Identities=26%  Similarity=0.594  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .+++|.|+||+|.+|..+|..|+.++.  ++++++..
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~   39 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIH   39 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCc
Confidence            357999999999999999999999885  78888764

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=91.09  E-value=0.32  Score=45.33  Aligned_cols=36  Identities=17%  Similarity=0.363  Sum_probs=30.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~   69 (248)
                      +...|+|||| |-+|.++|+.|+.+ +.. +++|+|...
T Consensus        29 ~~~dvvIIGg-Gi~G~s~A~~L~~~~g~~-~V~vle~~~   65 (407)
T TIGR01373        29 PTYDVIIVGG-GGHGLATAYYLAKEHGIT-NVAVLEKGW   65 (407)
T ss_pred             ccCCEEEECC-cHHHHHHHHHHHHhcCCC-eEEEEEccc
Confidence            4458999999 99999999999985 643 699999864

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK12829 short chain dehydrogenase; Provisional

Probab=91.08  E-value=0.4  Score=41.36  Aligned_cols=36  Identities=19%  Similarity=0.502  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.+|..++..|..++.  ++++++.++
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            457999999999999999999999986  699999865

>PLN02214 cinnamoyl-CoA reductase

Probab=91.07  E-value=0.35  Score=44.28  Aligned_cols=36  Identities=19%  Similarity=0.086  Sum_probs=30.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++++|.|+|++|+||++++..|..++.  +++.++.+.
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~   44 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNP   44 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCc
Confidence            456899999999999999999999885  677776543

>PRK06924 short chain dehydrogenase; Provisional

Probab=91.06  E-value=0.39  Score=41.25  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+|++|.+|.++|..|+.++.  ++++++.++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999986  789998765

>PRK06996 hypothetical protein; Provisional

Probab=91.05  E-value=0.32  Score=45.44  Aligned_cols=40  Identities=20%  Similarity=0.329  Sum_probs=32.5

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcc--eEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVD--HLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~--elvLiDi~~   69 (248)
                      +.....+|.|||+ |-+|.++|+.|++.++.+  .++|+|...
T Consensus         7 ~~~~~~dv~IvGg-GpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          7 MAAPDFDIAIVGA-GPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             ccCCCCCEEEECc-CHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            3444569999999 999999999999987533  699999754

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=91.04  E-value=1.4  Score=39.67  Aligned_cols=37  Identities=32%  Similarity=0.448  Sum_probs=29.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|.||+|..|+.+.-++.+.+-..=..-+|.+.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~   38 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPG   38 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCC
Confidence            6899999999999999999999888443344556554

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.03  E-value=0.35  Score=38.67  Aligned_cols=31  Identities=26%  Similarity=0.399  Sum_probs=27.6

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |+|+|+ |.+|..+|+.|.+.+.  ++.|++..+
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP   31 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc
Confidence            789999 9999999999999775  799998765

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=91.02  E-value=0.42  Score=40.96  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.||.++|..|+.++.  ++++++.++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~   39 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSE   39 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCch
Confidence            457999999999999999999999986  799998765

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PLN02256 arogenate dehydrogenase

Probab=91.02  E-value=0.35  Score=44.24  Aligned_cols=35  Identities=17%  Similarity=0.170  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||+|||+ |.+|.++|..|...+.  ++..+|.++
T Consensus        35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~   69 (304)
T PLN02256         35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSD   69 (304)
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECcc
Confidence            4579999998 9999999999998774  788999876

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=91.00  E-value=0.32  Score=46.51  Aligned_cols=34  Identities=21%  Similarity=0.494  Sum_probs=30.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|||+|||. |.||..+|..|+. +  -+++.+|+++
T Consensus         5 ~~mkI~vIGl-GyvGlpmA~~la~-~--~~V~g~D~~~   38 (425)
T PRK15182          5 DEVKIAIIGL-GYVGLPLAVEFGK-S--RQVVGFDVNK   38 (425)
T ss_pred             CCCeEEEECc-CcchHHHHHHHhc-C--CEEEEEeCCH
Confidence            3589999999 9999999999887 4  4899999987

>PRK08267 short chain dehydrogenase; Provisional

Probab=91.00  E-value=0.35  Score=41.86  Aligned_cols=34  Identities=29%  Similarity=0.599  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|.|+||+|.+|..++..|+.++.  +++++|.+.
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~   35 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINE   35 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            4799999999999999999999985  799999765

>PRK12320 hypothetical protein; Provisional

Probab=90.98  E-value=0.31  Score=49.54  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      |||.|+||+|+||++++..|..++.  +++.+|..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~   33 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQH   33 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCC
Confidence            5899999999999999999998885  78888854

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=90.97  E-value=0.27  Score=44.43  Aligned_cols=33  Identities=21%  Similarity=0.361  Sum_probs=29.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||. |++|.++|..|...+.  +++.+|.++
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~   33 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQ   33 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCH
Confidence            58999999 9999999999999875  789999876

>KOG2304|consensus

Probab=90.93  E-value=0.28  Score=43.45  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.|+|||| |..|+-+|...++.++  .+.|+|.++
T Consensus        11 ~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~   44 (298)
T KOG2304|consen   11 IKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANE   44 (298)
T ss_pred             ccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCH
Confidence            458999999 9999999999999998  899999998

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=90.92  E-value=0.44  Score=41.44  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|+++|+|+ |++|+++|..+...+.  |+..--.+.
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~   34 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRG   34 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCC
Confidence            579999998 9999999999999985  777765544

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=90.91  E-value=0.38  Score=41.54  Aligned_cols=36  Identities=28%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|++|.+|.++|..|+.++.  +++++|.++
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~   44 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDP   44 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            456999999999999999999999986  799999876

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=90.89  E-value=0.32  Score=45.76  Aligned_cols=35  Identities=37%  Similarity=0.557  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus        41 ~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~   75 (370)
T PRK05600         41 NARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT   75 (370)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            469999999 9999999999999985 6899999874

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=90.89  E-value=0.28  Score=44.69  Aligned_cols=33  Identities=33%  Similarity=0.510  Sum_probs=30.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||.|||+ |.+|..++..|+..|+ .+|.|+|-+.
T Consensus         1 kVlVVGa-GGlG~eilknLal~Gv-g~I~IvD~D~   33 (291)
T cd01488           1 KILVIGA-GGLGCELLKNLALSGF-RNIHVIDMDT   33 (291)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence            6999999 9999999999999995 7999999764

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.89  E-value=0.41  Score=41.15  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+|++|.||.+++..|+.++.  +++++|.+.
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence            4688999999999999999999985  899999754

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=90.88  E-value=0.47  Score=40.39  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..++|.|+||+|++|.+++..|..++.  ++++++.+.
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~   40 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICG   40 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999885  799999875

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=90.88  E-value=0.37  Score=39.82  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=28.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||+|||+ |.-|.++|..|...+.  ++.|+|...
T Consensus         1 ~vvIIGg-G~aGl~aA~~l~~~~~--~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGG-GPAGLSAALELARPGA--KVLIIEKSP   32 (201)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHTTS--EEEEESSSS
T ss_pred             CEEEEec-HHHHHHHHHHHhcCCC--eEEEEeccc
Confidence            7999999 9999999999997776  899997643

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=90.87  E-value=0.26  Score=50.39  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .-.||+|||| |..|..+|+.++..++  +++|+|+++
T Consensus       334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~  368 (737)
T TIGR02441       334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATP  368 (737)
T ss_pred             cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCH
Confidence            3468999999 9999999999999997  899999987

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK07190 hypothetical protein; Provisional

Probab=90.87  E-value=0.33  Score=47.07  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....|.|||| |-+|.++|..|...++  .++|+|..+
T Consensus         4 ~~~dVlIVGA-GPaGL~lA~~Lar~Gi--~V~llEr~~   38 (487)
T PRK07190          4 QVTDVVIIGA-GPVGLMCAYLGQLCGL--NTVIVDKSD   38 (487)
T ss_pred             ccceEEEECC-CHHHHHHHHHHHHcCC--CEEEEeCCC
Confidence            3468999999 9999999999999997  699999875

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=90.86  E-value=0.23  Score=44.50  Aligned_cols=32  Identities=31%  Similarity=0.425  Sum_probs=29.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||+|||+ |.+|.++|..|+..+.  ++.++|.++
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGP   32 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCH
Confidence            6999999 9999999999999885  899999886

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07890 short chain dehydrogenase; Provisional

Probab=90.84  E-value=0.43  Score=41.06  Aligned_cols=36  Identities=19%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..++|.|+|++|.||.++|..|+.++.  +++++|.++
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~   39 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTA   39 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            346899999999999999999999996  899999876

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=90.84  E-value=0.43  Score=41.27  Aligned_cols=36  Identities=28%  Similarity=0.367  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+|++|.+|.++|..|+.++.  +++++|.++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~   42 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE   42 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            346899999999999999999999985  799999875

>PRK09135 pteridine reductase; Provisional

Probab=90.82  E-value=0.46  Score=40.40  Aligned_cols=35  Identities=11%  Similarity=0.214  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|+||+|++|.+++..|+.++.  +++++|...
T Consensus         6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~   40 (249)
T PRK09135          6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRS   40 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            46899999999999999999999885  788888753

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=90.79  E-value=0.28  Score=49.26  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||| |-+|.++|+.|+.++.  +++|+|...
T Consensus       261 ~dVvIIGa-GIaG~s~A~~La~~G~--~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGG-GIAGAALALALARRGW--QVTLYEADE  293 (662)
T ss_pred             CCEEEECc-cHHHHHHHHHHHHCCC--eEEEEecCC
Confidence            58999999 9999999999999986  799999763

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=90.77  E-value=0.29  Score=46.79  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=29.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|+|||+ |.+|.++||.|+.+.--.+++|+|...
T Consensus        24 ~~DVvIIGg-Gi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        24 QADVCIVGG-GFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             eeCEEEECC-CHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            358999999 999999999999872223899999765

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=90.76  E-value=0.31  Score=45.47  Aligned_cols=33  Identities=36%  Similarity=0.505  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|+|||| |-+|.++|+.|...++  +++|+|..+
T Consensus         3 ~dV~IVGa-G~aGl~~A~~L~~~G~--~v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGA-GMVGSALALALQGSGL--EVLLLDGGP   35 (405)
T ss_pred             ccEEEECc-cHHHHHHHHHHhcCCC--EEEEEcCCC
Confidence            37999999 9999999999999986  899999754

>PRK07774 short chain dehydrogenase; Provisional

Probab=90.74  E-value=0.42  Score=40.90  Aligned_cols=35  Identities=31%  Similarity=0.469  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+|++|.+|.+++..|..++.  +++++|.++
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~   40 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINA   40 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46899999999999999999999884  799999875

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=90.74  E-value=0.37  Score=45.02  Aligned_cols=47  Identities=23%  Similarity=0.391  Sum_probs=35.2

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCc--ceEEEEecCCchhhHhhh
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLV--DHLSLYDIVHTPGVAADL   77 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~--~elvLiDi~~a~g~a~DL   77 (248)
                      .+.+||+||||+|.||..+.-+|...+-+  .+|.++.-.+..|+.+.+
T Consensus         3 ~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~   51 (347)
T PRK06728          3 EKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQF   51 (347)
T ss_pred             CCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeee
Confidence            35579999999999999999999965544  368888766544555533

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=90.74  E-value=0.31  Score=44.34  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=26.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      |||.|+|++|+||+.++..|..++. ..++.+|.
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~   33 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDK   33 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecC
Confidence            5899999999999999999998774 23555554

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=90.69  E-value=0.6  Score=38.96  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=34.0

Q ss_pred             cccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +........+|+|||. |+||..+|-.|...+.  ++.-+|...
T Consensus        29 ~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~   69 (178)
T PF02826_consen   29 FPGRELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSP   69 (178)
T ss_dssp             TTBS-STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSC
T ss_pred             CCccccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccC
Confidence            4444456789999999 9999999999998887  999999977

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK07063 short chain dehydrogenase; Provisional

Probab=90.68  E-value=0.85  Score=39.46  Aligned_cols=45  Identities=22%  Similarity=0.354  Sum_probs=35.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.++|.|+|++|.+|.++|..|+.++.  +++++|.++  .+..+-++.
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~   52 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIA   52 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            345899999999999999999999985  799999876  333344444

>PRK07060 short chain dehydrogenase; Provisional

Probab=90.67  E-value=0.47  Score=40.43  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+|++|.+|..++..|+.++.  ++++++.+.
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~   43 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNA   43 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456999999999999999999999985  799999865

>PRK05854 short chain dehydrogenase; Provisional

Probab=90.65  E-value=0.79  Score=41.46  Aligned_cols=39  Identities=26%  Similarity=0.297  Sum_probs=33.6

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+.+++.|+||++.||.++|..|+.++.  ++++.+.+.
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~   48 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNR   48 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            344567999999999999999999999985  789998876

>PRK07814 short chain dehydrogenase; Provisional

Probab=90.65  E-value=0.49  Score=41.22  Aligned_cols=36  Identities=17%  Similarity=0.366  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.||.+++..|..++.  +++++|.+.
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~   44 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTE   44 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            457999999999999999999999986  899999876

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=90.64  E-value=0.32  Score=42.70  Aligned_cols=32  Identities=19%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|+|||| |..|.++|..|...+.  ++.|+|.+.
T Consensus         2 dvvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~~   33 (300)
T TIGR01292         2 DVIIIGA-GPAGLTAAIYAARANL--KTLIIEGME   33 (300)
T ss_pred             cEEEECC-CHHHHHHHHHHHHCCC--CEEEEeccC
Confidence            7999999 9999999999998876  799999654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=90.63  E-value=0.29  Score=45.00  Aligned_cols=33  Identities=36%  Similarity=0.523  Sum_probs=30.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||.|||+ |.+|..++..|+..|+ .+|.|+|-+.
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gv-g~ItIvD~D~   33 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGF-GEIHIIDLDT   33 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcC-CeEEEEcCCC
Confidence            7999999 9999999999999995 8999999765

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=90.62  E-value=0.32  Score=45.58  Aligned_cols=35  Identities=34%  Similarity=0.607  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +..||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+
T Consensus       134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            4569999999 9999999999999995 789999987

>PRK07856 short chain dehydrogenase; Provisional

Probab=90.59  E-value=0.49  Score=40.83  Aligned_cols=36  Identities=17%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+++.|+|++|.||.+++..|+.++.  +++++|.+.
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~   40 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRA   40 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            456899999999999999999999886  799999865

>PLN00016 RNA-binding protein; Provisional

Probab=90.57  E-value=0.41  Score=44.42  Aligned_cols=36  Identities=22%  Similarity=0.282  Sum_probs=31.0

Q ss_pred             CCcEEEEE----cCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVA----GASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~Ii----GaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++||.|+    ||+|+||+.++..|..++.  ++..++.+.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~   90 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK   90 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence            34689999    9999999999999999885  788888754

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=90.57  E-value=0.41  Score=46.01  Aligned_cols=36  Identities=19%  Similarity=0.158  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+..|.|||| |-.|+++|..|+..++  +++|+|...
T Consensus        37 ~~~~DViIVGa-GPAG~~aA~~LA~~G~--~VlllEr~~   72 (450)
T PLN00093         37 GRKLRVAVIGG-GPAGACAAETLAKGGI--ETFLIERKL   72 (450)
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCC
Confidence            34469999999 9999999999999997  799999764

>PRK08264 short chain dehydrogenase; Validated

Probab=90.56  E-value=0.49  Score=40.26  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+|.|+|++|.+|..+|..|+.++. .++++++.+.
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~   41 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDP   41 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecCh
Confidence            456899999999999999999998884 4688898765

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=90.55  E-value=0.35  Score=43.10  Aligned_cols=33  Identities=21%  Similarity=0.412  Sum_probs=27.7

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.|+||+|+||++++..|...+. ..++++|...
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~   34 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLK   34 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCC
Confidence            78999999999999999998884 4677788653

>PRK06138 short chain dehydrogenase; Provisional

Probab=90.54  E-value=0.47  Score=40.60  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..++.|+|++|.||..++..|+.++.  ++++++.+.
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~   39 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA   39 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence            456899999999999999999999884  789998775

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=90.51  E-value=0.3  Score=45.64  Aligned_cols=32  Identities=28%  Similarity=0.455  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .+|.|||| |-+|.++|..|...++  ++.|+|..
T Consensus         5 ~dV~IvGa-G~~Gl~~A~~L~~~G~--~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGG-GMVGLALAAALKESDL--RIAVIEGQ   36 (405)
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCC--EEEEEcCC
Confidence            48999999 9999999999999987  78999974

>PRK05884 short chain dehydrogenase; Provisional

Probab=90.50  E-value=0.43  Score=40.84  Aligned_cols=34  Identities=15%  Similarity=0.324  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||+.|+||+|.+|.+++..|..++.  +++++|.++
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999999885  789998865

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=90.49  E-value=0.39  Score=48.10  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.+||.|+||+|+||++++..|..++.--+++.+|..
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~   41 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKL   41 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            4579999999999999999999987433478878753

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=90.44  E-value=0.37  Score=36.20  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|+|+ |+.|.+++|......=+.-..++|+++
T Consensus         2 k~~~v~ivGa-g~~G~a~~~~~~~~~g~~i~~~~dv~~   38 (96)
T PF02629_consen    2 KKTNVIIVGA-GNLGRALLYNGFSMRGFGIVAVFDVDP   38 (96)
T ss_dssp             TTEEEEEETT-TSHHHHHHHHHHHHHCECEEEEEEECT
T ss_pred             CCCeEEEECC-CCcHHHHHHhHHHHcCCCCEEEEEcCC
Confidence            4569999999 999999998766654455678899887

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=90.42  E-value=0.34  Score=45.34  Aligned_cols=37  Identities=16%  Similarity=0.320  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++.||+|||+ |.-|.++|..|...+.-.+|.|+|...
T Consensus         2 ~~~~vvIIGg-G~AG~~aA~~Lr~~~~~~~I~li~~e~   38 (396)
T PRK09754          2 KEKTIIIVGG-GQAAAMAAASLRQQGFTGELHLFSDER   38 (396)
T ss_pred             CcCcEEEECC-hHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence            4568999999 999999999999988766899998753

>PRK06197 short chain dehydrogenase; Provisional

Probab=90.39  E-value=0.72  Score=41.23  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.||.++|..|+.++.  ++++++.+.
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~   50 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNL   50 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  788998875

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=90.39  E-value=0.32  Score=48.85  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=32.6

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+..||.|+|| |.+|..+|..|+.-|+ .+|.|+|-..
T Consensus       336 L~~~kVLIvGa-GGLGs~VA~~La~~GV-g~ItlVD~D~  372 (664)
T TIGR01381       336 YSQLKVLLLGA-GTLGCNVARCLIGWGV-RHITFVDNGK  372 (664)
T ss_pred             HhcCeEEEECC-cHHHHHHHHHHHHcCC-CeEEEEcCCE
Confidence            34679999999 9999999999999996 7899999754

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=90.38  E-value=0.28  Score=44.73  Aligned_cols=33  Identities=36%  Similarity=0.465  Sum_probs=28.8

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.|+||+|.||+.++..|+..+. .+|+|+|.++
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E   33 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDE   33 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-H
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCCh
Confidence            67999999999999999999875 6899999987

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK06500 short chain dehydrogenase; Provisional

Probab=90.35  E-value=0.47  Score=40.49  Aligned_cols=35  Identities=11%  Similarity=0.211  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|+||+|.+|.+++..|..++.  ++++++.++
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~   40 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDP   40 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCH
Confidence            46999999999999999999999985  789998875

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=90.35  E-value=0.48  Score=40.32  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=28.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+|++|.||.++|..|+.++.-..+++.+.+.
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~   36 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHH   36 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCC
Confidence            589999999999999999999885433566666544

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=90.33  E-value=0.3  Score=45.75  Aligned_cols=34  Identities=24%  Similarity=0.417  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||.|||+ |-.|.++|+.|...+.+ +++++|..+
T Consensus         1 ~~V~IiGg-GiaGla~A~~L~~~g~~-~v~v~Er~~   34 (414)
T TIGR03219         1 LRVAIIGG-GIAGVALALNLCKHSHL-NVQLFEAAP   34 (414)
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCC-CEEEEecCC
Confidence            58999999 99999999999998743 688999865

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02583 cinnamoyl-CoA reductase

Probab=90.32  E-value=0.52  Score=42.21  Aligned_cols=35  Identities=23%  Similarity=0.064  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ..++|.|+||+|+||++++..|..++.  ++++++.+
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~   39 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQK   39 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcC
Confidence            346899999999999999999999986  77777764

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=90.32  E-value=0.32  Score=46.72  Aligned_cols=32  Identities=28%  Similarity=0.386  Sum_probs=29.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|+|||| |.+|..+|+.|+..++  ++.|++..+
T Consensus         2 ~VvVIGg-GlAGleaA~~LAr~G~--~V~LiE~rp   33 (433)
T TIGR00137         2 PVHVIGG-GLAGSEAAWQLAQAGV--PVILYEMRP   33 (433)
T ss_pred             CEEEECC-CHHHHHHHHHHHhCCC--cEEEEeccc
Confidence            7999999 9999999999999997  899998655

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=90.31  E-value=0.45  Score=41.30  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |+|.|+|++|.+|.++|..|+.++.  ++++.|.++
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~   34 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNE   34 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            5899999999999999999999985  799999876

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.30  E-value=0.35  Score=49.22  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=31.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHH-hCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~-~~~l~~elvLiDi~~   69 (248)
                      .-.||+|||| |..|..+|+.++ ..++  +++|+|+++
T Consensus       308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~  343 (708)
T PRK11154        308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINP  343 (708)
T ss_pred             cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCH
Confidence            3469999999 999999999998 7787  899999986

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=90.27  E-value=0.41  Score=45.18  Aligned_cols=37  Identities=24%  Similarity=0.401  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++||+|+||+|.+|..+.-+|..++.+ ||.++..++
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~   73 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADR   73 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChh
Confidence            5579999999999999999999999754 788886654

>PRK12939 short chain dehydrogenase; Provisional

Probab=90.27  E-value=0.5  Score=40.27  Aligned_cols=45  Identities=22%  Similarity=0.379  Sum_probs=35.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.++|.|+|++|.+|..+|..|..++.  ++++++.++  ..-...++.
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~   52 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALE   52 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHH
Confidence            457999999999999999999999885  788888765  333334443

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=90.25  E-value=0.39  Score=44.23  Aligned_cols=34  Identities=35%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|||| |-.|.++|+.|.+.++  +++++|...
T Consensus         5 ~~dv~IvGg-G~aGl~~A~~L~~~G~--~v~v~E~~~   38 (388)
T PRK07608          5 KFDVVVVGG-GLVGASLALALAQSGL--RVALLAPRA   38 (388)
T ss_pred             cCCEEEECc-CHHHHHHHHHHHhCCC--eEEEEecCC
Confidence            358999999 9999999999999986  799999876

>PRK06180 short chain dehydrogenase; Provisional

Probab=90.25  E-value=0.48  Score=41.70  Aligned_cols=35  Identities=14%  Similarity=0.119  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++|.|+|++|.||.+++..|+.++.  ++++++.+.
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~   38 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSE   38 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCH
Confidence            35799999999999999999999885  799999865

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=90.24  E-value=0.38  Score=43.57  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||++||. |++|.++|..|...+.  ++..+|+++
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~   33 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGP   33 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            48999999 9999999999999985  788899865

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=90.24  E-value=0.33  Score=46.08  Aligned_cols=32  Identities=31%  Similarity=0.531  Sum_probs=28.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHh----CCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQ----SPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~----~~l~~elvLiDi~~   69 (248)
                      .|.|||| |-+|.++|+.|++    +++  +++|+|..+
T Consensus         2 DV~IVGa-Gp~Gl~~A~~La~~~~~~G~--~v~viE~~~   37 (437)
T TIGR01989         2 DVVIVGG-GPVGLALAAALGNNPLTKDL--KVLLLDAVD   37 (437)
T ss_pred             cEEEECC-cHHHHHHHHHHhcCcccCCC--eEEEEeCCC
Confidence            5999999 9999999999998    676  799999843

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=90.24  E-value=0.37  Score=44.08  Aligned_cols=31  Identities=29%  Similarity=0.567  Sum_probs=28.9

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.|||| |-.|.++|+.|++.++  +++++|...
T Consensus         2 ViIvGa-G~aGl~~A~~L~~~G~--~v~v~Er~~   32 (385)
T TIGR01988         2 IVIVGG-GMVGLALALALARSGL--KIALIEATP   32 (385)
T ss_pred             EEEECC-CHHHHHHHHHHhcCCC--EEEEEeCCC
Confidence            899999 9999999999999997  899999876

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK09186 flagellin modification protein A; Provisional

Probab=90.24  E-value=0.6  Score=40.10  Aligned_cols=44  Identities=20%  Similarity=0.254  Sum_probs=34.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADL   77 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL   77 (248)
                      +.++|.|+||+|.+|.++|..|..++.  ++++++.++  ++..+-++
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~~~~~~~~~~l   48 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDKEALNELLESL   48 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecChHHHHHHHHHH
Confidence            346899999999999999999999885  789998765  33334444

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=90.23  E-value=0.31  Score=43.80  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=28.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      |||.|+|++|++|+++...|..++.  +++.++..
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~   33 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRS   33 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTT
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCch
Confidence            7999999999999999999998875  67766544

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=90.22  E-value=0.43  Score=45.36  Aligned_cols=34  Identities=18%  Similarity=0.247  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|.|||| |-.|+++|+.|+.+++  +++|+|..+
T Consensus         5 ~~DViIVGa-GpAG~~aA~~La~~G~--~V~llEr~~   38 (428)
T PRK10157          5 IFDAIIVGA-GLAGSVAALVLAREGA--QVLVIERGN   38 (428)
T ss_pred             cCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEEcCC
Confidence            468999999 9999999999999998  899999865

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.19  E-value=0.6  Score=39.46  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=28.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++++|.|+||+|.+|..++-.|.+++.  +++++....
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~   40 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD   40 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            456999999999999999999999886  555544433

>PRK11445 putative oxidoreductase; Provisional

Probab=90.11  E-value=0.38  Score=44.27  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=28.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|+|||| |-.|+++|..|+.. +  +++|+|..+
T Consensus         2 ~dV~IvGa-GpaGl~~A~~La~~-~--~V~liE~~~   33 (351)
T PRK11445          2 YDVAIIGL-GPAGSALARLLAGK-M--KVIAIDKKH   33 (351)
T ss_pred             ceEEEECC-CHHHHHHHHHHhcc-C--CEEEEECCC
Confidence            57999999 99999999999887 4  799999765

>PRK06475 salicylate hydroxylase; Provisional

Probab=90.09  E-value=0.36  Score=45.09  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||.|||| |-.|.++|.+|.+.++  ++.++|..+
T Consensus         3 ~~V~IvGg-GiaGl~~A~~L~~~G~--~V~i~E~~~   35 (400)
T PRK06475          3 GSPLIAGA-GVAGLSAALELAARGW--AVTIIEKAQ   35 (400)
T ss_pred             CcEEEECC-CHHHHHHHHHHHhCCC--cEEEEecCC
Confidence            58999999 9999999999999997  789999765

>PLN02780 ketoreductase/ oxidoreductase

Probab=90.05  E-value=0.67  Score=42.27  Aligned_cols=45  Identities=22%  Similarity=0.360  Sum_probs=36.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      ...+.|+||+|.+|.++|..|+.++.  +++|+|.++  .+..+.++..
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~   99 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQS   99 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHH
Confidence            46899999999999999999999986  799999987  4444555543

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=90.03  E-value=0.38  Score=42.24  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=27.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ||.|+|++|+||++++-.|..++.  ++++++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~   32 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSS   32 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCc
Confidence            689999999999999999998874  78877664

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=90.01  E-value=0.46  Score=38.81  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=28.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.|+||+|++|..++-.|..++  -++.++-.++
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~R~~   32 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG--HEVTALVRSP   32 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT--SEEEEEESSG
T ss_pred             eEEECCCChHHHHHHHHHHHCC--CEEEEEecCc
Confidence            7899999999999999999999  4788877654

...

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=90.01  E-value=0.39  Score=46.89  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=32.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....+|.|||| |-+|.++|..|..+++  +++++|...
T Consensus         8 ~~~~dV~IVGa-Gp~Gl~lA~~L~~~G~--~v~v~Er~~   43 (538)
T PRK06183          8 AHDTDVVIVGA-GPVGLTLANLLGQYGV--RVLVLERWP   43 (538)
T ss_pred             cCCCCEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            34579999999 9999999999999997  899999875

>PRK07024 short chain dehydrogenase; Provisional

Probab=90.01  E-value=0.52  Score=40.86  Aligned_cols=34  Identities=35%  Similarity=0.424  Sum_probs=30.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+|++|.+|..++..|+.++.  +++++|.+.
T Consensus         3 ~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~   36 (257)
T PRK07024          3 LKVFITGASSGIGQALAREYARQGA--TLGLVARRT   36 (257)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999999985  799999876

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=89.99  E-value=2.4  Score=40.80  Aligned_cols=73  Identities=12%  Similarity=0.167  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhcccCCCCeEEEee-EecCCC---CCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621        163 AYAGARFAFSLIQGLKGESNVIECA-YVKSDV---TEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI  238 (248)
Q Consensus       163 A~a~~~iv~aIl~~l~~~~~il~~s-~~~g~y---g~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i  238 (248)
                      +..+++|++||.+   |++.++.+- --+|.-   ..|...=+||+++++|++.+..- +|.+.-...++.....=+-.+
T Consensus       319 ~e~a~~ii~Ai~~---~~~~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~g-~lP~~~~~l~~~~i~~e~l~v  394 (442)
T COG1486         319 SEYASNIINAIEN---NKPSRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAVG-DLPEFVKGLMHTNINVEELTV  394 (442)
T ss_pred             HHHHHHHHHHHhc---CCceEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccccC-CCCHHHHHHHHHHHHHHHHHH
Confidence            3567899999999   888888775 333332   27999999999999999997655 688888877766554433333


Q ss_pred             H
Q psy14621        239 A  239 (248)
Q Consensus       239 ~  239 (248)
                      +
T Consensus       395 e  395 (442)
T COG1486         395 E  395 (442)
T ss_pred             H
Confidence            3

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=89.96  E-value=0.54  Score=41.76  Aligned_cols=37  Identities=30%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|+|++|++|..++..+...+-+.-..++|.+.
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~   37 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG   37 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence            4799999988999999998887765454455688765

>PRK07577 short chain dehydrogenase; Provisional

Probab=89.95  E-value=0.67  Score=39.24  Aligned_cols=35  Identities=31%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+|++|.+|..++..|+.++.  ++++++.+.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            46899999999999999999999985  799998865

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=89.94  E-value=0.38  Score=42.09  Aligned_cols=32  Identities=19%  Similarity=0.400  Sum_probs=28.1

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.|+||+|+||++++..|..++.  +++.++.++
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   32 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSP   32 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCC
Confidence            57999999999999999998874  888888866

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=89.93  E-value=0.4  Score=44.65  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=28.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .|.|||| |-.|+++|+.|++.++  +++|+|..
T Consensus         2 DVvIVGa-GpAG~~aA~~La~~G~--~V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGG-GPSGATAAETLARAGI--ETILLERA   32 (388)
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCC--cEEEEECC
Confidence            6999999 9999999999999987  79999986

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK06523 short chain dehydrogenase; Provisional

Probab=89.91  E-value=0.62  Score=40.24  Aligned_cols=36  Identities=17%  Similarity=0.237  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.||.+++..|+.++.  ++++++.++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~   43 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR   43 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence            456899999999999999999999886  799998865

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=89.88  E-value=0.69  Score=40.17  Aligned_cols=36  Identities=25%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..++|.|+|++|.+|.+++..|+.++.  +++++|.++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            446899999999999999999999986  889999876

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=89.84  E-value=0.45  Score=44.19  Aligned_cols=39  Identities=36%  Similarity=0.448  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEE-EEecCCchhh
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLS-LYDIVHTPGV   73 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elv-LiDi~~a~g~   73 (248)
                      +||+|+||+|.+|..++..|...+.+ +++ |++..+..|.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk   40 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGK   40 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCC
Confidence            58999999999999999999988766 455 7776553343

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=89.79  E-value=0.44  Score=44.18  Aligned_cols=34  Identities=35%  Similarity=0.390  Sum_probs=28.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEe
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD   66 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiD   66 (248)
                      ++||+|+||+|.+|..++..|...+-++-+.+.|
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~   35 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS   35 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence            4799999999999999999999887665456677

>PRK06172 short chain dehydrogenase; Provisional

Probab=89.79  E-value=0.65  Score=39.95  Aligned_cols=36  Identities=19%  Similarity=0.339  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.+|.++|..|..++.  ++++++.++
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~   41 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDA   41 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            346999999999999999999999884  799999876

>PRK06841 short chain dehydrogenase; Provisional

Probab=89.79  E-value=0.59  Score=40.20  Aligned_cols=36  Identities=22%  Similarity=0.420  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.+|.++|..|+.++.  ++++++.++
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~   49 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSE   49 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>PRK07806 short chain dehydrogenase; Provisional

Probab=89.74  E-value=0.7  Score=39.52  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+||+|++|.+++..|..++.  ++++++.+.
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~   40 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQK   40 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            46899999999999999999999885  788887754

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.72  E-value=0.62  Score=39.54  Aligned_cols=36  Identities=17%  Similarity=0.307  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|++|.||+.++..|...+.  ++++++.++
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346999999999999999999999886  899998876

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=89.69  E-value=0.42  Score=44.47  Aligned_cols=33  Identities=15%  Similarity=0.455  Sum_probs=28.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCC------CcceEEEEecC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSP------LVDHLSLYDIV   68 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~------l~~elvLiDi~   68 (248)
                      ||+|||+ |+.|.++|..|+.++      ...++.|+..+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~   39 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFE   39 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEec
Confidence            7999999 999999999999877      33589999874

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK08278 short chain dehydrogenase; Provisional

Probab=89.67  E-value=0.67  Score=40.80  Aligned_cols=36  Identities=19%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..++.|+||+|.+|..+|..|+.++.  +++++|.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTA   40 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeccc
Confidence            346899999999999999999999985  899999865

>PRK07478 short chain dehydrogenase; Provisional

Probab=89.66  E-value=0.71  Score=39.80  Aligned_cols=45  Identities=20%  Similarity=0.324  Sum_probs=35.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +..++.|+|++|.+|.++|..|+..+.  ++++++.++  .+...-++.
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~   51 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIR   51 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            345899999999999999999999986  799999876  333334444

>PRK14852 hypothetical protein; Provisional

Probab=89.66  E-value=0.36  Score=50.69  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|||+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus       331 ~~srVlVvGl-GGlGs~ia~~LAraGV-G~I~L~D~D~  366 (989)
T PRK14852        331 LRSRVAIAGL-GGVGGIHLMTLARTGI-GNFNLADFDA  366 (989)
T ss_pred             hcCcEEEECC-cHHHHHHHHHHHHcCC-CeEEEEcCCE
Confidence            3569999999 9999999999999997 8999999765

>PRK07825 short chain dehydrogenase; Provisional

Probab=89.65  E-value=0.58  Score=40.89  Aligned_cols=36  Identities=19%  Similarity=0.282  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|..++..|..++.  .+++.+.++
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~   39 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGA--RVAIGDLDE   39 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            346899999999999999999999885  688898876

>PRK07035 short chain dehydrogenase; Provisional

Probab=89.65  E-value=0.65  Score=39.93  Aligned_cols=36  Identities=31%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|++|.+|.+++..|..++.  .++++|.+.
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~   42 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL   42 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446899999999999999999999985  899999875

>PRK08017 oxidoreductase; Provisional

Probab=89.59  E-value=0.57  Score=40.22  Aligned_cols=34  Identities=26%  Similarity=0.304  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|.|+||+|.||.+++..|+.++.  ++++++.+.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~   36 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKP   36 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3799999999999999999999885  788888765

>PRK07208 hypothetical protein; Provisional

Probab=89.54  E-value=0.46  Score=45.34  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=31.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++.+|+|||| |.-|.++|+.|..++.  ++++++...
T Consensus         3 ~~~~vvIiGa-GisGL~aA~~L~~~g~--~v~v~E~~~   37 (479)
T PRK07208          3 NKKSVVIIGA-GPAGLTAAYELLKRGY--PVTVLEADP   37 (479)
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            4568999999 9999999999999886  799999876

>PRK08703 short chain dehydrogenase; Provisional

Probab=89.54  E-value=0.69  Score=39.50  Aligned_cols=36  Identities=19%  Similarity=0.342  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.+|.+++..|+.++.  ++++++.++
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            346899999999999999999999886  799999877

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=89.53  E-value=0.41  Score=46.79  Aligned_cols=34  Identities=32%  Similarity=0.418  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+|.|||| |-+|.++|+.|...++  +++++|..+
T Consensus        23 ~~dVlIVGa-GpaGl~lA~~L~~~G~--~v~viE~~~   56 (547)
T PRK08132         23 RHPVVVVGA-GPVGLALAIDLAQQGV--PVVLLDDDD   56 (547)
T ss_pred             cCCEEEECC-CHHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            358999999 9999999999999997  799999875

>PRK06834 hypothetical protein; Provisional

Probab=89.52  E-value=0.49  Score=45.89  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|.|||| |-+|.++|+.|.+.++  +++++|..+
T Consensus         3 ~~dVlIVGa-Gp~Gl~lA~~La~~G~--~v~vlEr~~   36 (488)
T PRK06834          3 EHAVVIAGG-GPTGLMLAGELALAGV--DVAIVERRP   36 (488)
T ss_pred             cceEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            358999999 9999999999999997  799999764

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=89.50  E-value=0.48  Score=46.18  Aligned_cols=34  Identities=18%  Similarity=0.157  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|.|||+ |-+|.++|+.|+.+++  .++|+|.+.
T Consensus         6 ~~DVvIIGG-Gi~G~~~A~~la~rGl--~V~LvEk~d   39 (508)
T PRK12266          6 TYDLLVIGG-GINGAGIARDAAGRGL--SVLLCEQDD   39 (508)
T ss_pred             cCCEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence            358999999 9999999999999998  799999865

>PRK04148 hypothetical protein; Provisional

Probab=89.50  E-value=0.71  Score=37.36  Aligned_cols=34  Identities=26%  Similarity=0.333  Sum_probs=30.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||.+||+ | -|.++|-.|+..+.  +++.+|+++
T Consensus        16 ~~~kileIG~-G-fG~~vA~~L~~~G~--~ViaIDi~~   49 (134)
T PRK04148         16 KNKKIVELGI-G-FYFKVAKKLKESGF--DVIVIDINE   49 (134)
T ss_pred             cCCEEEEEEe-c-CCHHHHHHHHHCCC--EEEEEECCH
Confidence            4479999999 9 89889999998875  999999998

>PRK06953 short chain dehydrogenase; Provisional

Probab=89.47  E-value=0.63  Score=39.38  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++.|+|++|.+|..++-.|+.++.  +++++|.+.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~   35 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDA   35 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCH
Confidence            4789999999999999999998875  799999875

>PRK08643 acetoin reductase; Validated

Probab=89.44  E-value=0.62  Score=40.15  Aligned_cols=34  Identities=24%  Similarity=0.393  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++.|+|++|.+|.+++..|+.++.  +++++|.+.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~   36 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNE   36 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4789999999999999999999985  799999876

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=89.44  E-value=0.51  Score=47.36  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....|+|||+ |-+|.++|+.|+.+++  +++|+|...
T Consensus        70 ~~~DVvVIGG-Gi~Ga~~A~~lA~rGl--~V~LvE~~d  104 (627)
T PLN02464         70 EPLDVLVVGG-GATGAGVALDAATRGL--RVGLVERED  104 (627)
T ss_pred             CccCEEEECC-CHHHHHHHHHHHhCCC--EEEEEeccc
Confidence            3468999999 9999999999999998  799999875

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=89.44  E-value=0.73  Score=32.45  Aligned_cols=29  Identities=17%  Similarity=0.358  Sum_probs=26.2

Q ss_pred             EEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         38 VAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        38 IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||| |--|.++|+.|...+.  ++.|+|.++
T Consensus         1 IiGa-G~sGl~aA~~L~~~g~--~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGA-GISGLAAAYYLAKAGY--RVTVFEKND   29 (68)
T ss_dssp             EES--SHHHHHHHHHHHHTTS--EEEEEESSS
T ss_pred             CEee-CHHHHHHHHHHHHCCC--cEEEEecCc
Confidence            8998 9999999999999987  999999887

...

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=89.42  E-value=1.7  Score=35.58  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=26.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      +||+|+|+ |.+|..++..+...+-+.-+...|.
T Consensus         1 ikv~I~G~-GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCEEEEeecC
Confidence            58999999 9999999988887665555556664

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK10015 oxidoreductase; Provisional

Probab=89.41  E-value=0.52  Score=44.89  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|.|||| |..|+++|+.|+..++  +++|+|..+
T Consensus         5 ~~DViIVGg-GpAG~~aA~~LA~~G~--~VlliEr~~   38 (429)
T PRK10015          5 KFDAIVVGA-GVAGSVAALVMARAGL--DVLVIERGD   38 (429)
T ss_pred             ccCEEEECc-CHHHHHHHHHHHhCCC--eEEEEecCC
Confidence            358999999 9999999999999997  799999865

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=89.38  E-value=0.56  Score=44.84  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....||+|||+ |..|.++|+.|...+.  ++.|+|..+
T Consensus       138 ~~~~~VvIIGg-GpaGl~aA~~l~~~g~--~V~lie~~~  173 (457)
T PRK11749        138 KTGKKVAVIGA-GPAGLTAAHRLARKGY--DVTIFEARD  173 (457)
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEccCC
Confidence            34579999999 9999999999999886  899999765

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=89.38  E-value=0.49  Score=44.35  Aligned_cols=33  Identities=21%  Similarity=0.305  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .-|+|||| |-.|+++|+.|++.++  +++|+|...
T Consensus         4 ~DVvIVGa-GPAGs~aA~~la~~G~--~VlvlEk~~   36 (396)
T COG0644           4 YDVVIVGA-GPAGSSAARRLAKAGL--DVLVLEKGS   36 (396)
T ss_pred             eeEEEECC-chHHHHHHHHHHHcCC--eEEEEecCC
Confidence            57999999 9999999999999994  789999865

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=89.31  E-value=0.79  Score=38.77  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=29.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|++|.+++..|..++.  +++++..+.
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~   39 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASS   39 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            456999999999999999999999885  566666544

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=89.24  E-value=0.73  Score=40.36  Aligned_cols=36  Identities=14%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..++.|+|++|.+|.+++..|+.++.  +++++|.+.
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~   44 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ   44 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446899999999999999999999986  799999875

>PRK09126 hypothetical protein; Provisional

Probab=89.21  E-value=0.51  Score=43.58  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=30.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+|.|||| |-.|.++|..|++.++  +++|+|..+
T Consensus         3 ~~dviIvGg-G~aGl~~A~~L~~~G~--~v~v~E~~~   36 (392)
T PRK09126          3 HSDIVVVGA-GPAGLSFARSLAGSGL--KVTLIERQP   36 (392)
T ss_pred             cccEEEECc-CHHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            358999999 9999999999999997  799999764

>PLN02985 squalene monooxygenase

Probab=89.21  E-value=0.61  Score=45.65  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=32.0

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .....+|.|||| |-+|.++|+.|++++.  ++.|+|...
T Consensus        40 ~~~~~DViIVGA-G~aGlalA~aLa~~G~--~V~vlEr~~   76 (514)
T PLN02985         40 KDGATDVIIVGA-GVGGSALAYALAKDGR--RVHVIERDL   76 (514)
T ss_pred             cCCCceEEEECC-CHHHHHHHHHHHHcCC--eEEEEECcC
Confidence            345569999999 9999999999999986  899999753

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=89.20  E-value=0.53  Score=39.04  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=25.9

Q ss_pred             EEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhh
Q psy14621         37 MVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGV   73 (248)
Q Consensus        37 ~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~   73 (248)
                      +|||| |.-|.++|+.|...++ +.++++|.+...|.
T Consensus         1 ~IIGa-G~aGl~~a~~l~~~g~-~~v~v~e~~~~~Gg   35 (203)
T PF13738_consen    1 VIIGA-GPAGLAAAAHLLERGI-DPVVVLERNDRPGG   35 (203)
T ss_dssp             EEE---SHHHHHHHHHHHHTT----EEEEESSSSSTT
T ss_pred             CEECc-CHHHHHHHHHHHhCCC-CcEEEEeCCCCCCC
Confidence            59999 9999999999999997 44999998863333

...

>PRK08244 hypothetical protein; Provisional

Probab=89.19  E-value=0.47  Score=45.66  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|.|||| |-+|.++|..|.+.++  +++|+|..+
T Consensus         3 ~dVlIVGa-GpaGl~lA~~L~~~G~--~v~viEr~~   35 (493)
T PRK08244          3 YEVIIIGG-GPVGLMLASELALAGV--KTCVIERLK   35 (493)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            47999999 9999999999999997  899999865

>PRK06198 short chain dehydrogenase; Provisional

Probab=89.17  E-value=0.63  Score=40.14  Aligned_cols=37  Identities=14%  Similarity=0.274  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.||..++..|..++. ..++++|.+.
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~-~~V~~~~r~~   41 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGA-AGLVICGRNA   41 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-CeEEEEcCCH
Confidence            456899999999999999999998874 3499999865

>PLN02686 cinnamoyl-CoA reductase

Probab=89.13  E-value=0.65  Score=43.12  Aligned_cols=36  Identities=14%  Similarity=0.053  Sum_probs=29.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .+++||.|+|++|+||++++..|..++.  +++++..+
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~   86 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDT   86 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            4567999999999999999999999985  67665444

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=89.12  E-value=0.57  Score=43.53  Aligned_cols=44  Identities=23%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHh--CCCcceEEEEecCCchhhHhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQ--SPLVDHLSLYDIVHTPGVAAD   76 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~--~~l~~elvLiDi~~a~g~a~D   76 (248)
                      +.+||+||||+|.||..+.-+|..  .+.+ ||.++--....|.-+.
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~-~l~~laS~~saG~~~~   48 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVG-ELYALASEESAGETLR   48 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCce-EEEEEEccCcCCceEE
Confidence            567999999999999999999998  4644 7888855443344333

>PRK06182 short chain dehydrogenase; Validated

Probab=89.07  E-value=0.71  Score=40.40  Aligned_cols=36  Identities=22%  Similarity=0.193  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.+|.++|..|..++.  ++++++.+.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   37 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY--TVYGAARRV   37 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999885  788888765

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=89.07  E-value=0.52  Score=43.63  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|.|||| |-+|.++|..|...+.--+++|+|..+
T Consensus         2 ~dv~IvGa-G~aGl~~A~~L~~~g~g~~v~liE~~~   36 (403)
T PRK07333          2 CDVVIAGG-GYVGLALAVALKQAAPHLPVTVVDAAP   36 (403)
T ss_pred             CCEEEECc-cHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence            47999999 999999999999985212799999864

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=89.03  E-value=0.55  Score=45.75  Aligned_cols=37  Identities=19%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +...|+|||+ |=+|.++||.|+...--.+|+|+|...
T Consensus         4 ~~~DVvIIGg-GIiG~slA~~L~~~~~g~~V~VlEk~~   40 (494)
T PRK05257          4 SKTDVVLIGG-GIMSATLGTLLKELEPEWSITMFERLD   40 (494)
T ss_pred             ccceEEEECc-HHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            4468999999 999999999999864334899999754

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=89.00  E-value=0.5  Score=47.85  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=31.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++.||.|||| |-.|.++|..|.++++  ++.+||...
T Consensus        79 ~~~~~VlIVGg-GIaGLalAlaL~r~Gi--~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGG-GIGGLVFALAAKKKGF--DVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECC-CHHHHHHHHHHHhcCC--eEEEEeccc
Confidence            35579999999 9999999999999997  799999753

>PRK08655 prephenate dehydrogenase; Provisional

Probab=88.98  E-value=0.57  Score=44.95  Aligned_cols=34  Identities=21%  Similarity=0.398  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+.|.+|.++|..|...+.  ++.++|.++
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~   34 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDP   34 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECCh
Confidence            5899998559999999999999885  789999876

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=88.95  E-value=0.55  Score=45.59  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..|.|||+ |-+|.++|+.|+.+++  +++|+|...
T Consensus         6 ~~DVvIIGG-Gi~G~~~A~~la~rG~--~V~LlEk~d   39 (502)
T PRK13369          6 TYDLFVIGG-GINGAGIARDAAGRGL--KVLLCEKDD   39 (502)
T ss_pred             ccCEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCC
Confidence            358999999 9999999999999997  799999875

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.94  E-value=0.48  Score=44.09  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||+|||+ |.+|.++|..|...+.  ++.++|.++
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~   33 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDP   33 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCC
Confidence            47999999 9999999999999986  677788776

>PRK09072 short chain dehydrogenase; Provisional

Probab=88.92  E-value=0.85  Score=39.58  Aligned_cols=36  Identities=36%  Similarity=0.508  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|++|.+|..++..|+.++.  +++++|.++
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~   39 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNA   39 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence            346899999999999999999999985  799999876

>PRK08226 short chain dehydrogenase; Provisional

Probab=88.92  E-value=0.69  Score=40.02  Aligned_cols=36  Identities=25%  Similarity=0.445  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..++.|+|++|.+|.+++..|..++.  ++++++.+.
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~   40 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA--NLILLDISP   40 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence            346899999999999999999999985  799999875

>PRK07454 short chain dehydrogenase; Provisional

Probab=88.92  E-value=0.68  Score=39.51  Aligned_cols=35  Identities=26%  Similarity=0.462  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++++.|+|++|.+|..++..|..++.  +++++|.++
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   40 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW--DLALVARSQ   40 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999999986  799999875

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.88  E-value=0.79  Score=39.05  Aligned_cols=35  Identities=20%  Similarity=0.476  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|+|++|.+|.+++..|+.++.  ++++++.+.
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~   41 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTE   41 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46899999999999999999999986  899999876

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=88.83  E-value=0.7  Score=39.90  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|+|++|.+|.++|..|+.++.  +++++|.+.
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~   40 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKP   40 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCH
Confidence            35899999999999999999999986  799999876

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=88.81  E-value=0.48  Score=41.72  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCC-cceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPL-VDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l-~~elvLiDi~~   69 (248)
                      |||+|||+ |++|.+++..|...+. ..++.++|.++
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~   36 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNA   36 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCH
Confidence            58999998 9999999999998774 34567787765

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=88.81  E-value=0.75  Score=36.21  Aligned_cols=36  Identities=25%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|+|++|+.|..++..+...+-..=...+|.++
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~   36 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP   36 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence            699999999999999999999966554455677765

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=88.81  E-value=0.82  Score=39.14  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=31.8

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+++.|+|++|.+|+.++..|+.++.  +++++|.+.
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            3456899999999999999999999885  889998764

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=88.80  E-value=0.45  Score=42.72  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             EEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         38 VAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        38 IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |+|++|++|++++..|..++-..++..+|+.+
T Consensus         2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~   33 (280)
T PF01073_consen    2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSP   33 (280)
T ss_pred             EEcCCcHHHHHHHHHHHHCCCceEEEEccccc
Confidence            78999999999999999999777899999876

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK05867 short chain dehydrogenase; Provisional

Probab=88.80  E-value=0.76  Score=39.66  Aligned_cols=36  Identities=19%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+|++|.+|.++|..|+.++.  ++++.|.+.
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   43 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA--QVAIAARHL   43 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            456899999999999999999999986  799999876

>PRK05993 short chain dehydrogenase; Provisional

Probab=88.77  E-value=0.65  Score=40.89  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.++|..|+.++.  ++++++.++
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~   38 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKE   38 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            4799999999999999999999885  799999875

>PRK08219 short chain dehydrogenase; Provisional

Probab=88.77  E-value=0.62  Score=39.10  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=29.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++|.|+|++|.+|..++..|+.+   .+++++|.+.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~---~~V~~~~r~~   36 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT---HTLLLGGRPA   36 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh---CCEEEEeCCH
Confidence            358999999999999999999887   4689999765

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=88.77  E-value=0.78  Score=39.81  Aligned_cols=36  Identities=14%  Similarity=0.299  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+|++|.||.++|..|+.++.  +++++|.++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999986  799999876

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=88.74  E-value=0.84  Score=41.01  Aligned_cols=34  Identities=26%  Similarity=0.104  Sum_probs=27.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .++|.|+||+|+||++++..|..++.  +++++..+
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~   38 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRD   38 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECC
Confidence            46999999999999999999999885  56654433

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=88.74  E-value=0.6  Score=45.11  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|+|||| |..|.++|..|...++  ++++++.+.
T Consensus         9 ~~~~VaIIGA-G~aGL~aA~~l~~~G~--~v~vfE~~~   43 (461)
T PLN02172          9 NSQHVAVIGA-GAAGLVAARELRREGH--TVVVFEREK   43 (461)
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHhcCC--eEEEEecCC
Confidence            3469999999 9999999999999987  899999876

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=88.73  E-value=0.56  Score=44.30  Aligned_cols=36  Identities=22%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....+|+|||. |+||+.+|..|...|.  ++..+|...
T Consensus       114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~  149 (378)
T PRK15438        114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPR  149 (378)
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcc
Confidence            35679999999 9999999999998887  899999644

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=88.71  E-value=0.81  Score=39.56  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+|++|.||+++|..|..++.  +++++|.+.
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~   46 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKA   46 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            46999999999999999999999886  789998865

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=88.71  E-value=0.67  Score=43.01  Aligned_cols=36  Identities=28%  Similarity=0.418  Sum_probs=30.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|+||+|.+|..++-.|...+.+ ||++++..+
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~s~   38 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWF-EVTALAASE   38 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEcCh
Confidence            479999999999999999999988765 788884444

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.69  E-value=0.92  Score=38.78  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=28.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .++|.|+||+|.+|.++|..|+.++.  ++++.+.+
T Consensus         5 ~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~   38 (253)
T PRK08642          5 EQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ   38 (253)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence            35899999999999999999999885  67666543

>PRK05693 short chain dehydrogenase; Provisional

Probab=88.69  E-value=0.69  Score=40.47  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.+++..|..++.  +++++|.+.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999998885  788998765

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=88.69  E-value=0.75  Score=38.02  Aligned_cols=35  Identities=31%  Similarity=0.316  Sum_probs=29.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++.||+|+|+ |+||...+..+...|.  +++.+|.+.
T Consensus        19 ~p~~vvv~G~-G~vg~gA~~~~~~lGa--~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGA-GRVGQGAAEIAKGLGA--EVVVPDERP   53 (168)
T ss_dssp             -T-EEEEEST-SHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred             CCeEEEEECC-CHHHHHHHHHHhHCCC--EEEeccCCH
Confidence            4579999998 9999999999999887  788899876

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=88.69  E-value=0.75  Score=42.29  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+||+|||+ |..|.++|..|...+.  ++.++|..+
T Consensus        17 ~~~~VvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~~   51 (352)
T PRK12770         17 TGKKVAIIGA-GPAGLAAAGYLACLGY--EVHVYDKLP   51 (352)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            3469999999 9999999999999886  899999865

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=88.69  E-value=0.65  Score=42.88  Aligned_cols=45  Identities=27%  Similarity=0.482  Sum_probs=32.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCC-cceEEEEecCCchhhHhhh
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPL-VDHLSLYDIVHTPGVAADL   77 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l-~~elvLiDi~~a~g~a~DL   77 (248)
                      ++||+|+||+|.+|..++-+|..++. ..||+.+-..+..|+.+++
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~   46 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF   46 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee
Confidence            46999999999999999999988532 2367777544434444443

>KOG1502|consensus

Probab=88.67  E-value=0.4  Score=44.36  Aligned_cols=28  Identities=39%  Similarity=0.394  Sum_probs=25.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLV   59 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~   59 (248)
                      .+++|+|.||+|+||+.+.-.|.++|.-
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~   32 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYT   32 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCE
Confidence            5689999999999999999999999973

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=88.67  E-value=0.78  Score=42.08  Aligned_cols=37  Identities=24%  Similarity=0.366  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++.||+|||+ |++|...+..+...+-+.=..++|+++
T Consensus         3 ~klrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~   39 (302)
T PRK08300          3 SKLKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDP   39 (302)
T ss_pred             CCCeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCCh
Confidence            4679999997 999999888887766555566888876

>PRK06179 short chain dehydrogenase; Provisional

Probab=88.67  E-value=0.76  Score=39.98  Aligned_cols=35  Identities=23%  Similarity=0.229  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|+|++|.+|.+++..|..++.  ++++++.+.
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~   38 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP   38 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            35899999999999999999999885  789998865

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=88.66  E-value=0.57  Score=44.36  Aligned_cols=35  Identities=17%  Similarity=0.218  Sum_probs=28.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++.||+|||+ |+-|.++|..|....  -+|.|||.++
T Consensus         9 ~~~~vVIvGg-G~aGl~~a~~L~~~~--~~ItlI~~~~   43 (424)
T PTZ00318          9 KKPNVVVLGT-GWAGAYFVRNLDPKK--YNITVISPRN   43 (424)
T ss_pred             CCCeEEEECC-CHHHHHHHHHhCcCC--CeEEEEcCCC
Confidence            4569999999 999999988875333  3799999876

>PRK06398 aldose dehydrogenase; Validated

Probab=88.64  E-value=0.61  Score=40.63  Aligned_cols=36  Identities=28%  Similarity=0.432  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.||.++|..|+..+.  +++++|.++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~   40 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKE   40 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            346899999999999999999999985  788888765

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=88.61  E-value=0.62  Score=44.71  Aligned_cols=44  Identities=23%  Similarity=0.341  Sum_probs=37.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADL   77 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL   77 (248)
                      ...+|+|||| |+-|.++|+.|.+.++-+ ++++|.+...|...+.
T Consensus         7 ~~~~v~IIGa-G~sGlaaa~~L~~~g~~~-~~i~Ek~~~~Gg~W~~   50 (443)
T COG2072           7 THTDVAIIGA-GQSGLAAAYALKQAGVPD-FVIFEKRDDVGGTWRY   50 (443)
T ss_pred             CcccEEEECC-CHHHHHHHHHHHHcCCCc-EEEEEccCCcCCcchh
Confidence            4569999999 999999999999999866 9999988755666555

>PRK06181 short chain dehydrogenase; Provisional

Probab=88.60  E-value=0.69  Score=40.01  Aligned_cols=34  Identities=32%  Similarity=0.457  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+|++|.+|..++..|+.++.  +++++|.++
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~   35 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNE   35 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999998885  799999876

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=88.59  E-value=0.63  Score=40.55  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=29.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .|.|||| |..|.++|+.|...++  +++++|...
T Consensus         2 dv~IiGa-G~aGl~~A~~l~~~g~--~v~vie~~~   33 (295)
T TIGR02032         2 DVVVVGA-GPAGASAAYRLADKGL--RVLLLEKKS   33 (295)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            5899999 9999999999999987  799999875

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=88.54  E-value=0.87  Score=41.09  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|++|.||.+++..|+.++.  ++++++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~   40 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNL   40 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence            356899999999999999999999884  789998765

>PRK06101 short chain dehydrogenase; Provisional

Probab=88.53  E-value=0.78  Score=39.38  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|.|+|++|.+|..++..|+.++.  +++++|.++
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~   35 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQ   35 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCH
Confidence            4799999999999999999999885  799999875

>PRK12831 putative oxidoreductase; Provisional

Probab=88.52  E-value=0.69  Score=44.56  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=31.5

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+||+|||+ |..|.++|+.|...+.  +++++|..+
T Consensus       138 ~~~~~V~IIG~-GpAGl~aA~~l~~~G~--~V~v~e~~~  173 (464)
T PRK12831        138 KKGKKVAVIGS-GPAGLTCAGDLAKMGY--DVTIFEALH  173 (464)
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEecCC
Confidence            35679999999 9999999999999986  789998654

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=88.51  E-value=0.62  Score=43.25  Aligned_cols=41  Identities=32%  Similarity=0.430  Sum_probs=33.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHh-CCCcceEEEEecCCchhh
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQ-SPLVDHLSLYDIVHTPGV   73 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~-~~l~~elvLiDi~~a~g~   73 (248)
                      ++||+|+||+|.||+.+.-+|.. ...++++.++-..+..|+
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~   42 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGK   42 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCC
Confidence            36999999999999999999999 666788888877663333

>PLN02712 arogenate dehydrogenase

Probab=88.49  E-value=0.71  Score=46.76  Aligned_cols=35  Identities=20%  Similarity=0.173  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||+|||. |.+|.++|..|...+.  +|+.+|.+.
T Consensus        51 ~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~   85 (667)
T PLN02712         51 TQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSD   85 (667)
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4579999998 9999999999998884  788999875

>PRK12937 short chain dehydrogenase; Provisional

Probab=88.42  E-value=0.96  Score=38.46  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|++|.+|+.+|..|+.++.  ++++++.+.
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~   39 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGS   39 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCC
Confidence            456899999999999999999999986  677776543

>PLN02463 lycopene beta cyclase

Probab=88.41  E-value=0.74  Score=44.33  Aligned_cols=41  Identities=15%  Similarity=0.209  Sum_probs=33.2

Q ss_pred             cccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.+.......|+|||| |-.|.++|..|++.++  +++|+|..+
T Consensus        21 ~~~~~~~~~DVvIVGa-GpAGLalA~~La~~Gl--~V~liE~~~   61 (447)
T PLN02463         21 FDPSKSRVVDLVVVGG-GPAGLAVAQQVSEAGL--SVCCIDPSP   61 (447)
T ss_pred             CCCccccCceEEEECC-CHHHHHHHHHHHHCCC--eEEEeccCc
Confidence            3333334569999999 9999999999999887  899999854

>PTZ00367 squalene epoxidase; Provisional

Probab=88.39  E-value=0.69  Score=45.92  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+|.|||| |-+|.++|..|.++++  ++.++|...
T Consensus        32 ~~~dViIVGa-GiaGlalA~aLar~G~--~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGG-SIAGPVLAKALSKQGR--KVLMLERDL   66 (567)
T ss_pred             cCccEEEECC-CHHHHHHHHHHHhcCC--EEEEEcccc
Confidence            4579999999 9999999999999987  899999753

>PRK06949 short chain dehydrogenase; Provisional

Probab=88.39  E-value=0.88  Score=39.08  Aligned_cols=36  Identities=25%  Similarity=0.351  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..++|.|+|++|.||.+++..|+.++.  ++++++.++
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            357999999999999999999999886  788998875

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=88.37  E-value=0.7  Score=41.81  Aligned_cols=43  Identities=23%  Similarity=0.401  Sum_probs=34.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhh
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADL   77 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL   77 (248)
                      ..+|.|+|| |..+.++++.|+..+. .+|.++|.+.  ++..+-++
T Consensus       127 ~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~  171 (283)
T PRK14027        127 LDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVI  171 (283)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHH
Confidence            468999999 9999999999998884 6899999876  44444444

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=88.34  E-value=0.72  Score=39.43  Aligned_cols=34  Identities=26%  Similarity=0.475  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+|++|.+|..++..|..++.  ++++++.+.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~   35 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE   35 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999886  799999876

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=88.27  E-value=0.71  Score=44.19  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||+|||+ |..|.++|+.|...+.  ++.++|..+
T Consensus       132 ~~~~V~IIG~-G~aGl~aA~~l~~~G~--~V~vie~~~  166 (449)
T TIGR01316       132 THKKVAVIGA-GPAGLACASELAKAGH--SVTVFEALH  166 (449)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            4579999999 9999999999999886  899999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=88.25  E-value=0.67  Score=45.29  Aligned_cols=37  Identities=19%  Similarity=0.283  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....|+|||+ |-+|.++|+.|+...-..+++|+|...
T Consensus        44 ~~~DVvIIGG-GI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         44 DVYDVVIVGG-GVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             CcccEEEECc-cHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            3469999999 999999999999864334899999853

>PRK07578 short chain dehydrogenase; Provisional

Probab=88.25  E-value=0.76  Score=38.20  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=28.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |++.|+|++|.+|..+|..|..+   .++++++.++
T Consensus         1 ~~vlItGas~giG~~la~~l~~~---~~vi~~~r~~   33 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR---HEVITAGRSS   33 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc---CcEEEEecCC
Confidence            47999999999999999999887   4788888754

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=88.23  E-value=0.62  Score=42.82  Aligned_cols=32  Identities=25%  Similarity=0.494  Sum_probs=29.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCC-CcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSP-LVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~-l~~elvLiDi~~   69 (248)
                      .|.|||| |-.|.++|..|..++ +  +++++|...
T Consensus         1 dv~IvGa-G~aGl~~A~~L~~~G~~--~v~v~E~~~   33 (382)
T TIGR01984         1 DVIIVGG-GLVGLSLALALSRLGKI--KIALIEANS   33 (382)
T ss_pred             CEEEECc-cHHHHHHHHHHhcCCCc--eEEEEeCCC
Confidence            3899999 999999999999999 8  899999865

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=88.20  E-value=0.68  Score=40.93  Aligned_cols=31  Identities=29%  Similarity=0.374  Sum_probs=26.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      ||.|+||+|+||..++..|..++.  +++++|.
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~   31 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDN   31 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeC
Confidence            689999999999999999988875  6777764

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK07062 short chain dehydrogenase; Provisional

Probab=88.19  E-value=1.5  Score=37.97  Aligned_cols=45  Identities=22%  Similarity=0.274  Sum_probs=35.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +...+.|+|+++.+|.++|..|+.++.  ++++++.++  .+....++.
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~   53 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLR   53 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHH
Confidence            346899999999999999999999986  789999876  333344444

>PRK06701 short chain dehydrogenase; Provisional

Probab=88.18  E-value=0.98  Score=40.31  Aligned_cols=37  Identities=14%  Similarity=0.435  Sum_probs=32.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.++|.|+||+|.||.++|..|+.++.  ++++++.+.
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~   80 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDE   80 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            3456899999999999999999999885  789998875

>PRK07201 short chain dehydrogenase; Provisional

Probab=88.18  E-value=0.69  Score=45.86  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=29.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|+||++++..|....-..++..++.+.
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~   36 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQ   36 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence            589999999999999999998533334888888754

>PRK05876 short chain dehydrogenase; Provisional

Probab=88.17  E-value=0.98  Score=39.95  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+.|+|++|.||.++|..|+.++.  ++++.|.++
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~   40 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDK   40 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45799999999999999999999986  799999876

>PRK07576 short chain dehydrogenase; Provisional

Probab=88.16  E-value=1  Score=39.40  Aligned_cols=36  Identities=14%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.||..++..|+.++.  +++++|.+.
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~   43 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQ   43 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999998885  699999875

>PRK08265 short chain dehydrogenase; Provisional

Probab=88.16  E-value=0.93  Score=39.47  Aligned_cols=36  Identities=19%  Similarity=0.262  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..++.|+|++|.+|.++|..|+.++.  ++++.|.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA   40 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346999999999999999999999986  899999876

>PRK05650 short chain dehydrogenase; Provisional

Probab=88.14  E-value=0.86  Score=39.78  Aligned_cols=34  Identities=29%  Similarity=0.585  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+|++|.+|..++..|..++.  ++++.|.+.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~   34 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNE   34 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3789999999999999999999986  788998765

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=88.13  E-value=0.72  Score=42.83  Aligned_cols=44  Identities=25%  Similarity=0.492  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhC--CCcceEEEEecCCchhhHhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQS--PLVDHLSLYDIVHTPGVAAD   76 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~--~l~~elvLiDi~~a~g~a~D   76 (248)
                      +++||+|+||+|.+|..+.-+|..+  +. .+|+++--.+-.|+-+.
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~-~~l~~v~s~~~aG~~l~   48 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPV-GTLHLLASSESAGHSVP   48 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCc-eEEEEEECcccCCCeec
Confidence            3479999999999999999999953  44 46777755442344333

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=88.12  E-value=0.6  Score=41.16  Aligned_cols=33  Identities=18%  Similarity=0.312  Sum_probs=26.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      ||.|+||+|++|.+++-.|...+--.+++++|.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~   33 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK   33 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence            588999999999999998887663346777775

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=88.08  E-value=0.81  Score=42.93  Aligned_cols=36  Identities=17%  Similarity=0.357  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+||+|||+.|.+|.++|..|...+.  ++.++|.+.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~  132 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDD  132 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCc
Confidence            447999999449999999999999885  789998764

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=88.07  E-value=0.95  Score=38.41  Aligned_cols=36  Identities=33%  Similarity=0.481  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.+|..++..|+.++.  .+++.+.+.
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~   40 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRV   40 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            456999999999999999999999885  677777654

>PLN02712 arogenate dehydrogenase

Probab=88.02  E-value=0.76  Score=46.55  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..++||+|||+ |.+|.++|..|...+.  +++.+|.+.
T Consensus       367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~  402 (667)
T PLN02712        367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSD  402 (667)
T ss_pred             CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECCh
Confidence            35689999998 9999999999998874  799999875

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=88.01  E-value=0.73  Score=43.94  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++||+|+|+ |+-|..++..|..+.---+|.|||.+.
T Consensus         2 ~~~~iVIlGg-GfgGl~~a~~l~~~~~~~~itLVd~~~   38 (405)
T COG1252           2 MKKRIVILGG-GFGGLSAAKRLARKLPDVEITLVDRRD   38 (405)
T ss_pred             CCceEEEECC-cHHHHHHHHHhhhcCCCCcEEEEeCCC
Confidence            3569999999 999999999999884123899999987

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.95  E-value=1.1  Score=38.10  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=31.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+|++|.+|.+++..|++++.  +++++|.+.
T Consensus         4 ~~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~   39 (235)
T PRK06550          4 MTKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQD   39 (235)
T ss_pred             CCCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            346899999999999999999999885  788898865

>PRK08628 short chain dehydrogenase; Provisional

Probab=87.94  E-value=0.98  Score=38.94  Aligned_cols=36  Identities=25%  Similarity=0.413  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.+|..+|..|+.++.  ++++++.++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~   41 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSA   41 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCCh
Confidence            456899999999999999999999985  688888776

>PRK06196 oxidoreductase; Provisional

Probab=87.92  E-value=0.85  Score=41.05  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  ++++++.+.
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~   60 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRP   60 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999985  789999875

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.89  E-value=0.92  Score=38.47  Aligned_cols=35  Identities=34%  Similarity=0.555  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEE-ecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY-DIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLi-Di~~   69 (248)
                      +.+|.|+|++|.+|..++..|+.++.  +++++ +.+.
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~   40 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINE   40 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            45899999999999999999998875  56666 8765

>PRK07074 short chain dehydrogenase; Provisional

Probab=87.88  E-value=0.92  Score=39.09  Aligned_cols=34  Identities=32%  Similarity=0.426  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++.|+|++|.+|..++..|+.++.  +++++|.+.
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~   36 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA   36 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999998884  799999875

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=87.85  E-value=0.98  Score=37.93  Aligned_cols=36  Identities=22%  Similarity=0.328  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||.|+|++|.+|..++..|...+.  ++.+++.+.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~   62 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDL   62 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            457999999889999999999998873  899998765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=87.84  E-value=0.99  Score=39.04  Aligned_cols=36  Identities=17%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.||.++|..|+..+.  .+++++.++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~   49 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT   49 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            456899999999999999999999886  788888764

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=87.77  E-value=0.78  Score=43.36  Aligned_cols=35  Identities=23%  Similarity=0.263  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+|+|||. |+||..+|..|...+.  +++.+|...
T Consensus       115 ~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~  149 (381)
T PRK00257        115 AERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPR  149 (381)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcc
Confidence            4579999999 9999999999998887  899999754

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=87.76  E-value=1.5  Score=40.70  Aligned_cols=36  Identities=19%  Similarity=0.205  Sum_probs=30.3

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+..+|+|||- |.+|..+|..|...+.  +++.+|...
T Consensus        14 LkgKtVGIIG~-GsIG~amA~nL~d~G~--~ViV~~r~~   49 (335)
T PRK13403         14 LQGKTVAVIGY-GSQGHAQAQNLRDSGV--EVVVGVRPG   49 (335)
T ss_pred             hCcCEEEEEeE-cHHHHHHHHHHHHCcC--EEEEEECcc
Confidence            34579999999 9999999999999987  787777543

>PRK12367 short chain dehydrogenase; Provisional

Probab=87.73  E-value=0.87  Score=39.85  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..++.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~   48 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSK   48 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            346899999999999999999999985  788888865

>KOG2336|consensus

Probab=87.69  E-value=0.53  Score=42.92  Aligned_cols=34  Identities=26%  Similarity=0.504  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .-|+|+|. |.||+-+|-.|..+|+ ..|.|+|-++
T Consensus        83 ~aVAiVGv-GGVGSV~AeMLTRCGI-GkLlLfDYDk  116 (422)
T KOG2336|consen   83 FAVAIVGV-GGVGSVTAEMLTRCGI-GKLLLFDYDK  116 (422)
T ss_pred             heeEEEec-CchhHHHHHHHHhcCc-ceEEEeecch
Confidence            47999999 9999999999999996 6899999875

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=87.61  E-value=0.69  Score=48.77  Aligned_cols=35  Identities=29%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .+..||+|||+ |.-|.++|+.|+..|.  +++++|-.
T Consensus       381 ~tgKKVaVVGa-GPAGLsAA~~La~~Gh--~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGL-GPAGFSLSYYLLRSGH--NVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhCCC--eEEEEccc
Confidence            35679999999 9999999999999987  89999953

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=87.58  E-value=0.86  Score=39.81  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCc-ceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLV-DHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~-~elvLiDi~~   69 (248)
                      +..||.|+|| |..|..+|+.|...++- +++.++|.+.
T Consensus        24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          24 EEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            4469999999 99999999999988852 3899999984

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK08263 short chain dehydrogenase; Provisional

Probab=87.58  E-value=0.98  Score=39.59  Aligned_cols=34  Identities=15%  Similarity=0.087  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.+++..|+.++.  +++++|.++
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~   37 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDT   37 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence            4799999999999999999999884  789999875

>KOG2018|consensus

Probab=87.57  E-value=0.67  Score=42.86  Aligned_cols=34  Identities=29%  Similarity=0.519  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .=|+|||| |.||+.++..|+..|. ..|.++|-+.
T Consensus        75 syVVVVG~-GgVGSwv~nmL~RSG~-qKi~iVDfdq  108 (430)
T KOG2018|consen   75 SYVVVVGA-GGVGSWVANMLLRSGV-QKIRIVDFDQ  108 (430)
T ss_pred             cEEEEEec-CchhHHHHHHHHHhcC-ceEEEechhh
Confidence            46899999 9999999999999984 6899999876

>PRK07233 hypothetical protein; Provisional

Probab=87.52  E-value=0.66  Score=43.12  Aligned_cols=32  Identities=16%  Similarity=0.331  Sum_probs=29.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||+|||| |--|.++|+.|..++.  ++.|+|.+.
T Consensus         1 ~vvVIGa-GiaGL~aA~~L~~~G~--~v~vlE~~~   32 (434)
T PRK07233          1 KIAIVGG-GIAGLAAAYRLAKRGH--EVTVFEADD   32 (434)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEeCC
Confidence            6999999 9999999999999986  799999887

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=87.51  E-value=0.84  Score=43.92  Aligned_cols=35  Identities=20%  Similarity=0.341  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...||+|||+ |..|.++|..|...+.  +++++|..+
T Consensus       142 ~~~~VvIIGa-GpAGl~aA~~l~~~G~--~V~vie~~~  176 (471)
T PRK12810        142 TGKKVAVVGS-GPAGLAAADQLARAGH--KVTVFERAD  176 (471)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--cEEEEecCC
Confidence            4569999999 9999999999999886  799999765

>PRK09897 hypothetical protein; Provisional

Probab=87.48  E-value=0.78  Score=45.26  Aligned_cols=36  Identities=22%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.||+|||+ |.-|.++|..|.....--+|.|+|.+.
T Consensus         1 m~~IAIIGg-Gp~Gl~~a~~L~~~~~~l~V~lfEp~~   36 (534)
T PRK09897          1 MKKIAIVGA-GPTGIYTFFSLLQQQTPLSISIFEQAD   36 (534)
T ss_pred             CCeEEEECC-cHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence            358999999 999999999998754323799999865

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=87.46  E-value=0.61  Score=45.28  Aligned_cols=33  Identities=21%  Similarity=0.379  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||. |..|.++|..|+.++.  ++.++|+++
T Consensus         2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~   34 (470)
T PTZ00142          2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTY   34 (470)
T ss_pred             CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            48999999 9999999999999997  899999987

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=87.44  E-value=0.81  Score=46.06  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...||+|||+ |..|.++|+.|...+.  +++++|..+
T Consensus       192 ~~k~VaIIGa-GpAGl~aA~~La~~G~--~Vtv~e~~~  226 (652)
T PRK12814        192 SGKKVAIIGA-GPAGLTAAYYLLRKGH--DVTIFDANE  226 (652)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            3469999999 9999999999999986  799999765

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.40  E-value=0.68  Score=43.80  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+|+ |.+|.+++..|..++.  +++++|.++
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~   33 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDE   33 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCH
Confidence            68999999 9999999999998876  899999876

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=87.39  E-value=1.1  Score=38.06  Aligned_cols=34  Identities=21%  Similarity=0.236  Sum_probs=29.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|.|+|++|.+|.++|..|..++.  .++++|.+.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence            3789999999999999999999884  788888874

>PRK07831 short chain dehydrogenase; Provisional

Probab=87.36  E-value=2.2  Score=36.99  Aligned_cols=36  Identities=25%  Similarity=0.345  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCC-ccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASG-GIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG-~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+|++| .||.+++..|+.++.  ++++.|.+.
T Consensus        16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~   52 (262)
T PRK07831         16 AGKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE   52 (262)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            457899999977 699999999999985  588999876

>PRK07069 short chain dehydrogenase; Validated

Probab=87.35  E-value=0.87  Score=38.87  Aligned_cols=32  Identities=25%  Similarity=0.540  Sum_probs=29.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ||.|+|++|.+|.+++..|+.++.  +++++|.+
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~   32 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDIN   32 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCC
Confidence            589999999999999999999885  89999987

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=87.34  E-value=0.91  Score=43.73  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=30.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||+|||+ |..|.++|+.|...+.  +++++|..+
T Consensus       140 ~~~~V~IIG~-GpaGl~aA~~l~~~G~--~V~i~e~~~  174 (467)
T TIGR01318       140 TGKRVAVIGA-GPAGLACADILARAGV--QVVVFDRHP  174 (467)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHcCC--eEEEEecCC
Confidence            4579999999 9999999999999986  689998765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK07109 short chain dehydrogenase; Provisional

Probab=87.31  E-value=1.1  Score=40.92  Aligned_cols=36  Identities=19%  Similarity=0.313  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.||.++|..|+.++.  ++++++.++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~   42 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGE   42 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            346899999999999999999999985  799999876

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=87.26  E-value=0.7  Score=40.97  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=26.5

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.|+||+|+||++++..|..++. .+++++|...
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~   33 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLR   33 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCC
Confidence            57899999999999999998883 3677777543

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=87.16  E-value=0.72  Score=42.98  Aligned_cols=33  Identities=24%  Similarity=0.452  Sum_probs=28.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.|+|+ |+||+.++..|+.+.-..++++.|.+.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~   33 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNP   33 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSH
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCH
Confidence            789999 999999999999998777999999987

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=87.15  E-value=0.86  Score=41.45  Aligned_cols=35  Identities=23%  Similarity=0.441  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|+|+ |.+|..+|..|+..|+ .+|.|+|-+.
T Consensus        19 ~s~VLIvG~-gGLG~EiaKnLalaGV-g~itI~D~d~   53 (286)
T cd01491          19 KSNVLISGL-GGLGVEIAKNLILAGV-KSVTLHDTKP   53 (286)
T ss_pred             cCcEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCc
Confidence            459999999 9999999999999996 7899999865

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK08589 short chain dehydrogenase; Validated

Probab=87.12  E-value=1.2  Score=39.20  Aligned_cols=45  Identities=27%  Similarity=0.370  Sum_probs=35.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~   78 (248)
                      +.+++.|+|+++.+|.++|..|+.++.  +++++|.++ .+..+.++.
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~   50 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIK   50 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHH
Confidence            345899999999999999999999985  899999875 333344444

>PRK06483 dihydromonapterin reductase; Provisional

Probab=87.12  E-value=1.1  Score=38.08  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++.|+|++|.+|.++|..|+.++.  +++++|.++
T Consensus         3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   36 (236)
T PRK06483          3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH   36 (236)
T ss_pred             ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            4789999999999999999999886  889999876

>PRK07832 short chain dehydrogenase; Provisional

Probab=87.08  E-value=0.94  Score=39.64  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++.|+|++|.+|..++..|+.++.  ++++++.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~   34 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDA   34 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3799999999999999999999885  689999876

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=87.08  E-value=0.82  Score=42.40  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||+ |.=|+++|..|+.++  .+++|...++
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng--~~V~lw~r~~   34 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNG--HEVRLWGRDE   34 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcC--CeeEEEecCH
Confidence            469999999 999999999999998  5899998876

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=87.05  E-value=0.84  Score=43.62  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.-|.+.|..+++.+.  +++|+|.+.
T Consensus         1 ~~vvVIG~-G~aG~~aA~~~~~~g~--~V~lie~~~   33 (458)
T PRK06912          1 SKLVVIGG-GPAGYVAAITAAQNGK--NVTLIDEAD   33 (458)
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCc
Confidence            59999999 9999999999999886  899999754

>TIGR01746 Thioester-redct thioester reductase domain

Probab=87.02  E-value=0.84  Score=40.97  Aligned_cols=35  Identities=20%  Similarity=0.160  Sum_probs=28.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|.|+||+|++|.+++..|..++-..+++++..+.
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~   35 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAA   35 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccC
Confidence            58899999999999999999887444677777654

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=87.00  E-value=0.79  Score=46.03  Aligned_cols=34  Identities=18%  Similarity=0.298  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~   69 (248)
                      ..+|.|||| |-+|.++|..|++. ++  ++++||..+
T Consensus        32 ~~dVlIVGA-GPaGL~lA~~Lar~~Gi--~v~IiE~~~   66 (634)
T PRK08294         32 EVDVLIVGC-GPAGLTLAAQLSAFPDI--TTRIVERKP   66 (634)
T ss_pred             CCCEEEECC-CHHHHHHHHHHhcCCCC--cEEEEEcCC
Confidence            569999999 99999999999995 87  799999865

>PRK12742 oxidoreductase; Provisional

Probab=87.00  E-value=1.3  Score=37.52  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .++|.|+|++|.||..+|..|+.++.  ++++.+..
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~   39 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG   39 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence            46899999999999999999999886  67777653

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=86.99  E-value=1.2  Score=38.50  Aligned_cols=46  Identities=17%  Similarity=0.390  Sum_probs=35.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      ..++|.|+|++|.||.+++..|..++.  +++++|.+.  .+..+.++.+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~   57 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQ   57 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHh
Confidence            357999999999999999999999985  788898765  3333444443

>PRK05872 short chain dehydrogenase; Provisional

Probab=86.95  E-value=1.4  Score=39.26  Aligned_cols=36  Identities=33%  Similarity=0.457  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|++|.||..+|..|+..+.  ++++++.++
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   43 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEE   43 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>PRK08339 short chain dehydrogenase; Provisional

Probab=86.95  E-value=1.4  Score=38.61  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +...+.|+|++|.||.++|..|+..+.  +++++|.+.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~   42 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNE   42 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345789999999999999999999985  799999876

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=86.94  E-value=0.79  Score=42.31  Aligned_cols=31  Identities=26%  Similarity=0.390  Sum_probs=28.2

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.|||| |-.|.++|+.|...++  +++|+|..+
T Consensus         2 viIiGa-G~AGl~~A~~la~~g~--~v~liE~~~   32 (388)
T TIGR01790         2 LAVIGG-GPAGLAIALELARPGL--RVQLIEPHP   32 (388)
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--eEEEEccCC
Confidence            799999 9999999999998887  899999765

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=86.94  E-value=1  Score=40.33  Aligned_cols=37  Identities=16%  Similarity=0.400  Sum_probs=32.0

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+..||.|+|+ |.+|.++++.|...+. .++.+++.+.
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~-~~V~v~~R~~  157 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPLLDLGV-AEITIVNRTV  157 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEEeCCH
Confidence            34568999998 9999999999998884 5899999876

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=86.82  E-value=0.81  Score=40.81  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=28.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCC-CcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSP-LVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~-l~~elvLiDi~~   69 (248)
                      ++||+|||+ |++|..++..+...+ -+.-+.++|.++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~   37 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNL   37 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCH
Confidence            479999999 999999999888764 233356788876

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=86.76  E-value=0.83  Score=43.05  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=29.1

Q ss_pred             CcEEEEEcCCCccHHHHHH-HHHhCCC-cceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSL-LLKQSPL-VDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~-~l~~~~l-~~elvLiDi~~   69 (248)
                      ++||+|+||+|.||..+.- +|....+ ..+++++....
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~   39 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQ   39 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchh
Confidence            3699999999999999997 5556665 45788876644

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=86.76  E-value=0.81  Score=42.98  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCccHH-HHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQ-PLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~-~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+++|| |++|. .+..+|...+  -+|+++|+++
T Consensus         1 mki~~~Ga-Ga~gr~~~~~~l~~~g--~~V~~vd~~~   34 (381)
T PRK02318          1 MKAVHFGA-GNIGRGFIGKLLADNG--FEVTFVDVNQ   34 (381)
T ss_pred             CceEEECC-chhhHHHHHHHHHhCC--CeEEEEECCH
Confidence            69999999 99997 6677887777  3899999865

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=86.70  E-value=1.1  Score=43.66  Aligned_cols=57  Identities=23%  Similarity=0.344  Sum_probs=46.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhcCccCC---CeEEEEcCch
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLSHIESK---AHVQAFNGAD   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~~~~~~---~~v~~~~~~d   93 (248)
                      +||+|.|| |--|.++|+-|+.+|+  ++.|+.... +=|.+.-..+.+.+   +...+|.+.|
T Consensus         1 ~rVai~Ga-G~AgL~~a~~La~~g~--~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y   61 (485)
T COG3349           1 MRVAIAGA-GLAGLAAAYELADAGY--DVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCY   61 (485)
T ss_pred             CeEEEEcc-cHHHHHHHHHHHhCCC--ceEEEeccCccCceeeeeecCCCCeeeeeeEEechhH
Confidence            58999999 9999999999999997  899999888 77777767666542   4666777765

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=86.68  E-value=1  Score=44.41  Aligned_cols=35  Identities=17%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...||+|||+ |.+|.++|+.|...+.  +++++|..+
T Consensus       136 ~g~~V~VIGa-GpaGL~aA~~l~~~G~--~V~v~e~~~  170 (564)
T PRK12771        136 TGKRVAVIGG-GPAGLSAAYHLRRMGH--AVTIFEAGP  170 (564)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence            4579999999 9999999999999986  689999654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=86.62  E-value=1  Score=40.55  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|||| |..+.++++.|...+ +.+|.+++.+.
T Consensus       124 ~~k~vlvlGa-GGaarai~~aL~~~G-~~~i~I~nRt~  159 (282)
T TIGR01809       124 AGFRGLVIGA-GGTSRAAVYALASLG-VTDITVINRNP  159 (282)
T ss_pred             CCceEEEEcC-cHHHHHHHHHHHHcC-CCeEEEEeCCH
Confidence            3468999999 999999999999988 46899999875

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK06482 short chain dehydrogenase; Provisional

Probab=86.54  E-value=1.2  Score=38.91  Aligned_cols=34  Identities=18%  Similarity=0.152  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+|++|+||..++..|+.++.  .+++++.++
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~   36 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRP   36 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999885  688888764

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=86.44  E-value=1  Score=41.45  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=27.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.+||+|||+ |++|.++|..|...++  +++..+..
T Consensus         2 ~~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~   35 (314)
T TIGR00465         2 KGKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRK   35 (314)
T ss_pred             CcCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECc
Confidence            3579999999 9999999999999886  55554443

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.42  E-value=1.6  Score=37.31  Aligned_cols=34  Identities=21%  Similarity=0.374  Sum_probs=27.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      +..+|.|+|++|+||++++..|+.++.  ++++...
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~   38 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK   38 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            356999999999999999999998885  5655443

>PRK06114 short chain dehydrogenase; Provisional

Probab=86.31  E-value=1.6  Score=37.68  Aligned_cols=36  Identities=31%  Similarity=0.553  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..++.|+|++|.||.++|..|+.++.  +++++|.+.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~   42 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT   42 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            345899999999999999999999985  888999864

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=86.29  E-value=1.1  Score=45.16  Aligned_cols=35  Identities=23%  Similarity=0.418  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||+|||+ |..|.++|+.|...+.  ++.++|..+
T Consensus       326 ~~~~VaIIGa-GpAGLsaA~~L~~~G~--~V~V~E~~~  360 (654)
T PRK12769        326 SDKRVAIIGA-GPAGLACADVLARNGV--AVTVYDRHP  360 (654)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence            4579999999 9999999999999986  689999765

>PRK09291 short chain dehydrogenase; Provisional

Probab=86.26  E-value=1.3  Score=37.99  Aligned_cols=34  Identities=18%  Similarity=0.337  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|..++..|+.++.  ++++++.+.
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~   36 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIA   36 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999999884  677777654

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=86.23  E-value=1  Score=42.26  Aligned_cols=35  Identities=20%  Similarity=0.274  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||| |--|.++|+.|...+.--++.|++-.+
T Consensus         1 ~~v~IVGa-GiaGL~aA~~L~~~G~~~~V~vlEa~~   35 (451)
T PRK11883          1 KKVAIIGG-GITGLSAAYRLHKKGPDADITLLEASD   35 (451)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            58999999 999999999999987333789998876

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=86.18  E-value=1.4  Score=37.60  Aligned_cols=32  Identities=25%  Similarity=0.398  Sum_probs=27.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      ++|.|+|++|.+|+.+|..|+.++.  ++++.+.
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~   34 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW--SVGINYA   34 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence            4899999999999999999999885  5666553

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=86.12  E-value=1  Score=41.74  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||+|||. |++|.++|..|...++  +++..+.+.
T Consensus        16 ~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~   50 (330)
T PRK05479         16 KGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREG   50 (330)
T ss_pred             CCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            4579999999 9999999999999987  777777653

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=86.11  E-value=1.3  Score=42.22  Aligned_cols=36  Identities=31%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++++|.|+||+|.+|.++|..|..++.  +++++|.++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~  212 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNS  212 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            457899999999999999999999885  788888765

>PRK05865 hypothetical protein; Provisional

Probab=86.09  E-value=1  Score=46.85  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=29.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      |||.|+||+|+||++++..|..++.  +++++|.+
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~   33 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARH   33 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECC
Confidence            5899999999999999999998885  78888865

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.99  E-value=1.6  Score=39.17  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=31.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+++.|+|++|.||.++|..|+.++.  ++++.|...
T Consensus        10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~   46 (306)
T PRK07792         10 LSGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVAS   46 (306)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCc
Confidence            3457899999999999999999999985  788998754

>PRK08605 D-lactate dehydrogenase; Validated

Probab=85.91  E-value=1.2  Score=41.16  Aligned_cols=36  Identities=28%  Similarity=0.408  Sum_probs=28.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHH-hCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~-~~~l~~elvLiDi~~   69 (248)
                      ...+||+|||+ |++|.++|..|+ ..+.  ++..+|...
T Consensus       144 l~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~  180 (332)
T PRK08605        144 IKDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFP  180 (332)
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCc
Confidence            45679999999 999999999984 3343  788898765

>PRK07904 short chain dehydrogenase; Provisional

Probab=85.91  E-value=1.4  Score=38.40  Aligned_cols=37  Identities=14%  Similarity=0.249  Sum_probs=30.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++-. .+++++.++
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~   43 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPD   43 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCc
Confidence            4568999999999999999999887522 788888875

>PRK06139 short chain dehydrogenase; Provisional

Probab=85.90  E-value=1.3  Score=40.58  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.||.++|..|+.++.  +++|++.++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~   41 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDE   41 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            346899999999999999999999985  799999876

>PTZ00188 adrenodoxin reductase; Provisional

Probab=85.88  E-value=1.4  Score=43.13  Aligned_cols=37  Identities=19%  Similarity=0.264  Sum_probs=29.6

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHH-HhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLL-KQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l-~~~~l~~elvLiDi~~   69 (248)
                      +.+..||+|||+ |.-|.++|..| ++.+.  ++.|+|..+
T Consensus        36 ~~~~krVAIVGa-GPAGlyaA~~Ll~~~g~--~VtlfEk~p   73 (506)
T PTZ00188         36 EAKPFKVGIIGA-GPSALYCCKHLLKHERV--KVDIFEKLP   73 (506)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHhcCC--eEEEEecCC
Confidence            345679999999 99999998854 45554  799999876

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.84  E-value=1.5  Score=37.33  Aligned_cols=36  Identities=22%  Similarity=0.505  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..++.|+|++|.+|..++..|..++.  .++++|.++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            356899999999999999999999885  789999876

>PRK12744 short chain dehydrogenase; Provisional

Probab=85.82  E-value=1.7  Score=37.60  Aligned_cols=35  Identities=14%  Similarity=0.163  Sum_probs=28.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.++|.|+|++|.||.++|..|+.++.  ++++++.+
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~   41 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYN   41 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecC
Confidence            346899999999999999999998885  55666543

>PLN02268 probable polyamine oxidase

Probab=85.79  E-value=1  Score=42.36  Aligned_cols=33  Identities=21%  Similarity=0.355  Sum_probs=29.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||+|||| |.-|.++|+.|...+.  ++++++-..
T Consensus         1 ~~VvVIGa-GisGL~aA~~L~~~g~--~v~vlEa~~   33 (435)
T PLN02268          1 PSVIVIGG-GIAGIAAARALHDASF--KVTLLESRD   33 (435)
T ss_pred             CCEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCC
Confidence            38999999 9999999999999886  799998876

>PRK12746 short chain dehydrogenase; Provisional

Probab=85.79  E-value=1.5  Score=37.60  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=26.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEe
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD   66 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiD   66 (248)
                      .++|.|+|++|.+|+++|..|+.++.  ++++++
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~   37 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHY   37 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEc
Confidence            46899999999999999999999874  565543

>PRK09134 short chain dehydrogenase; Provisional

Probab=85.78  E-value=1.7  Score=37.52  Aligned_cols=35  Identities=20%  Similarity=0.268  Sum_probs=28.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ..++|.|+||+|.||.+++..|..++.  ++++++..
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~   42 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNR   42 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            346899999999999999999998885  66666654

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=85.77  E-value=0.97  Score=46.37  Aligned_cols=35  Identities=17%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||| |--|.++|.+|...+---+++|++.++
T Consensus         1 m~V~IIGa-GpAGLaaAi~L~~~~~G~~V~vlEr~~   35 (765)
T PRK08255          1 MRIVCIGG-GPAGLYFALLMKLLDPAHEVTVVERNR   35 (765)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence            69999999 999999999999873222899999876

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=85.74  E-value=1.3  Score=43.04  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|+|||| |+=|.++|..|++.|+  ++.+++.+.
T Consensus         2 ~~~dvvVIGa-G~~GL~aAa~LA~~G~--~V~VlE~~~   36 (487)
T COG1233           2 PMYDVVVIGA-GLNGLAAAALLARAGL--KVTVLEKND   36 (487)
T ss_pred             CCccEEEECC-ChhHHHHHHHHHhCCC--EEEEEEecC
Confidence            4579999999 9999999999999998  899999776

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=85.72  E-value=0.99  Score=43.43  Aligned_cols=34  Identities=26%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCc----ceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLV----DHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~----~elvLiDi~~   69 (248)
                      ||.|||| |.+|..++..|+..|+.    .+|.++|-+.
T Consensus         1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~   38 (435)
T cd01490           1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDN   38 (435)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCC
Confidence            6899999 99999999999999973    6899999765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=85.72  E-value=1.1  Score=47.59  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||+|||+ |.-|.++|+.|...+.  ++.|+|..+
T Consensus       538 tgKkVaIIGg-GPAGLsAA~~Lar~G~--~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGA-GPAGLAAAYFLARAGH--PVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC--eEEEEeccc
Confidence            4569999999 9999999999999986  899999765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		5e-61
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		2e-59
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		2e-43
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		5e-43
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		5e-43
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		2e-42
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		2e-42
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		1e-36
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		2e-04
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		2e-04

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  230 bits (587), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 111/160 (69%), Positives = 131/160 (81%)
Query: 86  VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
           V+A     +LKGL+P  VNVPVIGGHAG TIIPLISQ TP V FP DQL ALTGRIQEAG
Sbjct: 179 VRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAG 238
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
           TEVVKAKAGAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  TE +YFSTP+ L
Sbjct: 239 TEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLL 298
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           GK GIEKNLG+GK+S FE++++  A+PELK +I KGE+FV
Sbjct: 299 GKKGIEKNLGIGKVSSFEEKMISDAIPELKASIKKGEDFV 338

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  225 bits (574), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/152 (70%), Positives = 126/152 (82%)
Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKGL+P  V+VPVIGGHAG TIIPLISQ TP V FP DQL  LTGRIQEAGTEVVKAKA
Sbjct: 159 ELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKA 218
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           GAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  T+  YFSTP+ LGK GIEKN
Sbjct: 219 GAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKN 278
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           LG+GK+S FE++++  A+PELK +I KGEEFV
Sbjct: 279 LGIGKISPFEEKMIAEAIPELKASIKKGEEFV 310

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKG  P +V VPVIGGH+G+TI+PL+SQ  P VSF + ++  LT RIQ AGTEVV+AKA
Sbjct: 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKA 218
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           G GSATLSM  A ARF  SL++ L+GE  V+ECAYV+ D   A +FS P+ LGKNG+E+ 
Sbjct: 219 GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEER 278
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
             +G LS FE+  ++  +  LKK+IA GEEFV K
Sbjct: 279 KSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  171 bits (432), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/154 (55%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKG  P +V VPVIGGH+G+TI+PL+SQ  P VSF + ++  LT RIQ AGTEVV+AKA
Sbjct: 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKA 218
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           G GSATLSM  A ARF  SL++ L+GE  V+ECAYV+ D   A +FS P+ LGKNG+E+ 
Sbjct: 219 GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEER 278
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
             +G LS FE+  ++  +  LKK+IA G+EFV K
Sbjct: 279 KSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 312

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  171 bits (432), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 86/154 (55%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKG  P +V VPVIGGH+G+TI+PL+SQ  P VSF + ++  LT RIQ AGTEVV+AKA
Sbjct: 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKA 218
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           G GSATLSM  A ARF  SL++ L+GE  V+ECAYV+ D   A +FS P+ LGKNG+E+ 
Sbjct: 219 GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEER 278
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
             +G LS FE+  ++  +  LKK+IA G+EFV K
Sbjct: 279 KSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 312

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 117/160 (73%)
Query: 86  VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
           V+A     ++ GL+P DV+VPV+GGHAG+TI+PL+SQ  P  SF  +++  LT RIQ  G
Sbjct: 159 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGG 218
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
           TEVV+AKAGAGSATLSMAYA  +FA + ++GL+G++ VIECA+V S VTE  +F++ V L
Sbjct: 219 TEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRL 278
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           G+NGIE+   LG L+++E+  ++ A  EL  +I KG  F+
Sbjct: 279 GRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFI 318

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 83/160 (51%), Positives = 117/160 (73%)
Query: 86  VQAFNGADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG 145
           V+A     ++ GL+P DV+VPV+GGHAG+TI+PL+SQ  P  SF  +++  LT RIQ  G
Sbjct: 195 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGG 254
Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
           TEVV+AKAGAGSATLSMAYA  +FA + ++GL+G++ VIECA+V S VTE  +F++ V L
Sbjct: 255 TEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRL 314
Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           G+NGIE+   LG L+++E+  ++ A  EL  +I KG  F+
Sbjct: 315 GRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFI 354

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/152 (52%), Positives = 106/152 (69%), Gaps = 2/152 (1%)
Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKG +P +V VPVIGGH+G+TI+PL+SQ    V F D+++ ALT RIQ AGTEVV+AKA
Sbjct: 163 ELKGQDPGEVRVPVIGGHSGVTILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKA 221
Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           G GSATLS   A  RF  +L++ L+GE  VIE AYV+ +   AS+F+ PV LGK G+E+ 
Sbjct: 222 GGGSATLSXGQAACRFGLALVKALQGE-EVIEYAYVEGNGEHASFFAQPVKLGKEGVEEI 280
Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           L  G+LSDFEK  +   +  L  +I  G +FV
Sbjct: 281 LPYGELSDFEKAALDGXLETLNSDIQIGVDFV 312

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAG-TEVVKAKAGA 155
           G+ P+DV+  V+GGH G  +IPL S  T       D ++   G+I  +   E++K  A  
Sbjct: 173 GVKPSDVSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQ--GKITHSQINEIIKKTAFG 229
Query: 156 GSATLSMAYAGARFAFSLIQG-------LKGESNVIECA-YVKSDVTEASYF-STPVHLG 206
           G   + +   G+ F              LK   +V+ C+ Y+       + F   PV +G
Sbjct: 230 GGEIVELLKTGSAFYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNLFVGVPVVIG 289
Query: 207 KNGIEKNLGLGKLSDFEKELVKAAVPELK 235
           KNGIE ++ +  LSD EK L   +V  ++
Sbjct: 290 KNGIE-DVVIVNLSDDEKSLFSKSVESIQ 317

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 16/151 (10%)
Query: 98  LNPTDVNVPVIGGHAGITIIPLISQATP-----SVSFPDDQLKALTGRIQEAGTEVVKAK 152
           L+  D+   V+GGH G  ++PL+  +           P ++L+A+  R ++ G E+V   
Sbjct: 170 LSVKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GL 227
Query: 153 AGAGSATLSMAYAGARFAFSLIQG-LKGESNVIEC-AYVKSDVTEAS-YFSTPVHLGKNG 209
            G GSA     YA A     + +  LK +  V+   AY++ +   +  Y   PV LG NG
Sbjct: 228 LGNGSAY----YAPAASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDLYLGVPVILGGNG 283
Query: 210 IEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           IEK + L  L+D EKE +  +V E  +N+ K
Sbjct: 284 IEKIIELELLAD-EKEALDRSV-ESVRNVMK 312

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	4e-79
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-25
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-77
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	9e-26
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-74
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	2e-21
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	3e-13
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	3e-13
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	1e-12
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	2e-12
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	5e-12
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	6e-12
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	6e-12
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	1e-11
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	2e-11
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	3e-11
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	3e-11
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	3e-11
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	4e-11
3tl2_A	315	Malate dehydrogenase; center for structural genomi	4e-11
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	9e-11
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	2e-10
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	2e-10
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	3e-10
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	3e-10
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	3e-10
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	3e-10
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	5e-10
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	5e-10
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	8e-10
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	1e-09
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	1e-09
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	4e-09
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	6e-09
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	3e-08
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	5e-08
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	7e-08
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	6e-07
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  240 bits (614), Expect = 4e-79
 Identities = 81/154 (52%), Positives = 114/154 (74%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           ++ GL+P DV+VPV+GGHAG+TI+PL+SQ  P  SF  +++  LT RIQ  GTEVV+AKA
Sbjct: 167 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKA 226

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           GAGSATLSMAYA  +FA + ++GL+G++ VIECA+V S VTE  +F++ V LG+NGIE+ 
Sbjct: 227 GAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEV 286

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
             LG L+++E+  ++ A  EL  +I KG  F+  
Sbjct: 287 YSLGPLNEYERIGLEKAKKELAGSIEKGVSFIRS 320

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  101 bits (253), Expect = 1e-25
 Identities = 34/65 (52%), Positives = 48/65 (73%)

Query: 32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNG 91
             KV + GA+GGIGQPL++L+K +PLV  L LYD+V+ PGV AD+SH+++ A V+ F G
Sbjct: 7  PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLG 66

Query: 92 ADQLK 96
            QL+
Sbjct: 67 QQQLE 71

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  235 bits (603), Expect = 1e-77
 Identities = 107/152 (70%), Positives = 126/152 (82%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKGL+P  V+VPVIGGHAG TIIPLISQ TP V FP DQL  LTGRIQEAGTEVVKAKA
Sbjct: 159 ELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKA 218

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           GAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  T+  YFSTP+ LGK GIEKN
Sbjct: 219 GAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKN 278

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           LG+GK+S FE++++  A+PELK +I KGEEFV
Sbjct: 279 LGIGKISPFEEKMIAEAIPELKASIKKGEEFV 310

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  101 bits (254), Expect = 9e-26
 Identities = 46/63 (73%), Positives = 52/63 (82%)

Query: 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGAD 93
          AKV V GASGGIGQPLSLLLK SPLV  L+LYDI HTPGVAADLSHIE++A V+ + G +
Sbjct: 1  AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPE 60

Query: 94 QLK 96
          QL 
Sbjct: 61 QLP 63

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  228 bits (583), Expect = 1e-74
 Identities = 87/154 (56%), Positives = 112/154 (72%), Gaps = 1/154 (0%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKG  P +V VPVIGGH+G+TI+PL+SQ  P VSF + ++  LT RIQ AGTEVV+AKA
Sbjct: 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKA 218

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           G GSATLSM  A ARF  SL++ L+GE  V+ECAYV+ D   A +FS P+ LGKNG+E+ 
Sbjct: 219 GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEER 278

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
             +G LS FE+  ++  +  LKK+IA GEEFV K
Sbjct: 279 KSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK 312

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score = 90.0 bits (224), Expect = 2e-21
 Identities = 39/71 (54%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 35  KVMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH-TPGVAADLSHIESKAHVQAFNGA 92
           KV V GA+GGIGQ L+LLLK Q P    LSLYDI   TPGVA DLSHI +   ++ F+G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 93  DQLKGLNPTDV 103
           D    L   DV
Sbjct: 62  DATPALEGADV 72

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score = 67.3 bits (165), Expect = 3e-13
 Identities = 28/155 (18%), Positives = 55/155 (35%), Gaps = 18/155 (11%)

Query: 97  GLNPTDV-NVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAG 145
           G+  + V N    GGH G  +    S A            +    ++Q   L  R+ + G
Sbjct: 167 GIKQSLVTNTRTYGGH-GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGG 225

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVKSDVTEASYFSTPVH 204
             ++K +    S+  S +Y       +    + GE+       YV     E    +    
Sbjct: 226 ANIIKLRGR--SSFQSPSYVSIEMIRAA---MGGEAFRWPAGCYVNVPGFEHIMMAMETT 280

Query: 205 LGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 239
           + K+G++ +      ++ E+  +K +   L K   
Sbjct: 281 ITKDGVKHSDINQLGNEAERAALKESYSHLAKLRD 315

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score = 66.8 bits (164), Expect = 3e-13
 Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 21/153 (13%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT---PSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
                +V   ++G H G   +P+ S+ +       F  D+ + L G +QE+  +V++ K 
Sbjct: 161 DAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK- 218

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHLGK 207
             G+     A   A    ++   L     V+  +      +   D      F  PV LG 
Sbjct: 219 --GATEWGPARGVAHMVEAI---LHDTGEVLPASVKLEGEFGHEDT----AFGVPVSLGS 269

Query: 208 NGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           NG+E+ +    L D+E++L+  A  +L     K
Sbjct: 270 NGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDK 301

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 32/167 (19%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
           G++   VN  V+G H G  + P+   ++    P       ++++ +      AG ++ + 
Sbjct: 158 GVSFKSVNAIVLGMH-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITEL 216

Query: 152 KAGA-----GSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
           +  +      +  +    A        I   +    +   +      Y  +D+       
Sbjct: 217 RGYSSNYGPAAGLVLTVEA--------I--KRDSKRIYPYSLYLQGEYGYNDI----VAE 262

Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
            P  +GK+GIE+ + L  L++ EK     AV  +KK +      + +
Sbjct: 263 VPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETLPPQLRE 308

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score = 64.4 bits (158), Expect = 2e-12
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 21/161 (13%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
           G++  D+N  V+GGH G  ++P++   T    P     P + +  L  R +  G E+V+ 
Sbjct: 160 GVSMQDINACVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH 218

Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
               GSA  + A +      S+   +     V+ CA      Y         +   PV L
Sbjct: 219 -LKQGSAFYAPASSVVEMVESI---VLDRKRVLPCAVGLEGQYGIDKT----FVGVPVKL 270

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA 246
           G+NG+E+   +  L   + +L++ +   + +N    E  + 
Sbjct: 271 GRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKMLESTIG 310

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score = 63.7 bits (156), Expect = 5e-12
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 28/160 (17%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
            + P DVN  ++G H G  ++ L    T           +    D +L+A+  R      
Sbjct: 168 NVCPRDVNAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTAL 226

Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
           E+V       S  ++ A A    A S    LK    V+ C+      Y  SD+    +  
Sbjct: 227 EIVNLH---ASPYVAPAAAIIEMAESY---LKDLKKVLICSTLLEGQYGHSDI----FGG 276

Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           TPV LG NG+E+ + L +L+  EK     A+ E K+  A 
Sbjct: 277 TPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETKRMKAL 315

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score = 63.3 bits (155), Expect = 6e-12
 Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 26/158 (16%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQATPS-------VSFPDDQLKALTGRIQEAGTEVV 149
           G++  +V   +IG H G +++PL+S  +           F +  +  +   ++  G +++
Sbjct: 164 GVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQII 222

Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK------SDVTEASYFSTP 202
           + K   G +    A A       +   +  E  ++   AYV        DV        P
Sbjct: 223 RLK---GGSEFGPAAAILNVVRCI---VNNEKRLLTLSAYVDGEFDGIRDV----CIGVP 272

Query: 203 VHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           V +G++GIE+ + + +L   E    + +   +KK   +
Sbjct: 273 VKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEE 309

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score = 63.3 bits (155), Expect = 6e-12
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 22/155 (14%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
            ++  DV   ++GGH G T++PL    T    P      D +++ +  R + AG E+V  
Sbjct: 160 DVSVRDVQALLMGGH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDL 218

Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
                SA  +   A A    ++   LK    ++ CA      Y   D+    +   PV L
Sbjct: 219 MGT--SAWYAPGAAAAEMTEAI---LKDNKRILPCAAYCDGEYGLDDL----FIGVPVKL 269

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           G  G+E+ + +  L   EK  +K +   +  N+  
Sbjct: 270 GAGGVEEVIEV-DLDADEKAQLKTSAGHVHSNLDD 303

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 21/155 (13%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
           G++  DV   ++GGH G  ++PL   +     P   F   D+L  +  R ++ G E+V  
Sbjct: 161 GVSVEDVQAMLMGGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL 219

Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
               GSA  + A A A+   ++   LK +  V+  A      Y  +D+    YF  PV L
Sbjct: 220 L-KTGSAYYAPAAATAQMVEAV---LKDKKRVMPVAAYLTGQYGLNDI----YFGVPVIL 271

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           G  G+EK L L  L++ E  L+ A+   ++  +  
Sbjct: 272 GAGGVEKILEL-PLNEEEMALLNASAKAVRATLDT 305

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 43/160 (26%), Positives = 70/160 (43%), Gaps = 26/160 (16%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
           G+ P+DV+  V+GGH G  +IPL S  T                  Q+  +  +    G 
Sbjct: 173 GVKPSDVSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGG 231

Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
           E+V+     GSA  + A +    A +    LK   +V+ C+      Y  +++    +  
Sbjct: 232 EIVELL-KTGSAFYAPAASAVAMAQAY---LKDSKSVLVCSTYLTGQYNVNNL----FVG 283

Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
            PV +GKNGIE  + +  LSD EK L   +V  ++  +  
Sbjct: 284 VPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQNLVQD 322

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 26/160 (16%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
            ++P DV   VIG H G  ++PL+   T                + QL+ +    + +G 
Sbjct: 174 SVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGG 232

Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
           E+V+   G GSA  + A +    A S    L  E  VI C+      Y   D+    +  
Sbjct: 233 EIVRFL-GQGSAYYAPAASAVAMATSF---LNDEKRVIPCSVYCNGEYGLKDM----FIG 284

Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
            P  +G  GIE+ + L +L++ EK+  + +V ++      
Sbjct: 285 LPAVIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMALNKA 323

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score = 61.0 bits (149), Expect = 3e-11
 Identities = 39/160 (24%), Positives = 66/160 (41%), Gaps = 26/160 (16%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
           G+N +DV+  VIGGH G  ++P  S  +                 +Q+  +    + A  
Sbjct: 163 GVNASDVSANVIGGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWK 221

Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
           EV       G+A  + A A  + A +    LK +  V+ C+      Y    +    Y  
Sbjct: 222 EVADNL-KTGTAYFAPAAAAVKMAEAY---LKDKKAVVPCSAFCSNHYGVKGI----YMG 273

Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
            P  +GKNG+E  L L  L+  E++L+  ++ E+      
Sbjct: 274 VPTIIGKNGVEDILEL-DLTPLEQKLLGESINEVNTISKV 312

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score = 61.0 bits (149), Expect = 3e-11
 Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 31/170 (18%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
            ++   V   V+GGH G T++PL   +                  ++L A+  R +  G 
Sbjct: 164 NVSVQQVQAYVMGGH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGG 222

Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA-------Y-VKSDVTEASY 198
           E+V      GSA  + A AG + A S    LK +  ++ CA       Y +  D+    +
Sbjct: 223 EIVALL-KTGSAYYAPAAAGIQMAESF---LKDKKMILPCAAKVKAGMYGLDEDL----F 274

Query: 199 FSTPVHLGKNGIEK-NLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
              P  +  NG+    +   ++SD E+E ++ ++  +K       E +AK
Sbjct: 275 VGVPTEISANGVRPIEV---EISDKEREQLQVSINAIKDLNKAAAEILAK 321

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score = 61.0 bits (149), Expect = 4e-11
 Identities = 34/161 (21%), Positives = 66/161 (40%), Gaps = 28/161 (17%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
            ++P  V+  ++G H G +     S AT                DD L  L   ++    
Sbjct: 163 NVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAY 221

Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYFS 200
           +++  K   G+    +  A  R + ++   L+ E+ V+   AY+      +D+    Y  
Sbjct: 222 DIINLK---GATFYGIGTALMRISKAI---LRDENAVLPVGAYMDGQYGLNDI----YIG 271

Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 241
           TP  +G  G+++ +    LS  E + ++ +   LKK +  G
Sbjct: 272 TPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVLNDG 311

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score = 61.0 bits (149), Expect = 4e-11
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 21/155 (13%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKA 151
            L+  D+   V+GGH G  ++PL+  +     P  +  P ++L+A+  R ++ G E+V  
Sbjct: 169 NLSVKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG- 226

Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHL 205
             G GSA  + A +      ++   LK +  V+         Y  SD+    Y   PV L
Sbjct: 227 LLGNGSAYYAPAASLVEMTEAI---LKDQRRVLPAIAYLEGEYGYSDL----YLGVPVIL 279

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           G NGIEK + L +L   EKE +  +V  ++  +  
Sbjct: 280 GGNGIEKIIEL-ELLADEKEALDRSVESVRNVMKV 313

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score = 59.8 bits (146), Expect = 9e-11
 Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 26/160 (16%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
            ++  DV V V+GGH G +++PL   +T                 D+L  +  R ++ G 
Sbjct: 166 NVSVEDVTVFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGA 224

Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFS 200
           E+V      GSA  + A +  + A S    LK +  V+  A      Y   D+    Y  
Sbjct: 225 EIVGLL-KTGSAFYAPAASAIQMAESY---LKDKKRVLPVAAQLSGQYGVKDM----YVG 276

Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
            P  +G NG+E+ + +  L   EK     +V  +      
Sbjct: 277 VPTVIGANGVERIIEI-DLDKDEKAQFDKSVASVAGLCEA 315

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 28/163 (17%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGT 146
            + P  V+  +IG H G T +P+ S A                   Q++ +  + ++A  
Sbjct: 165 DVAPRSVDAQIIGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAY 223

Query: 147 EVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYFS 200
           ++++AK   G+    +A   AR   ++    + E  V+   A ++      DV    Y  
Sbjct: 224 DIIQAK---GATYYGVAMGLARITEAI---FRNEDAVLTVSALLEGEYEEEDV----YIG 273

Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE 243
            P  + +NGI   + +  L+D E+     +   LK  +A+ EE
Sbjct: 274 VPAVINRNGIRNVVEI-PLNDEEQSKFAHSAKTLKDIMAEAEE 315

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 29/162 (17%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT-----------PSVSFPDDQLKALTGRIQEAG 145
            + P +V+  +IG H G T +P+ SQA                     L+ +   +++A 
Sbjct: 165 SVAPQNVHAYIIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAA 223

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYF 199
            ++++ K   G+    +A   AR   ++   L  E+ ++   AY+       DV    Y 
Sbjct: 224 YQIIEKK---GATYYGIAMGLARVTRAI---LHNENAILTVSAYLDGLYGERDV----YI 273

Query: 200 STPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 241
             P  + +NGI + + + +L+D EK     +   LK  +A+ 
Sbjct: 274 GVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARA 314

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 29/161 (18%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT-----------PSVSFPDDQLKALTGRIQEAG 145
            ++   V+  ++G H G T  P+ S A                  +D+L  +   +++A 
Sbjct: 167 NVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAA 225

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYF 199
            E++K K   G+    +A A AR + ++   L  E+ V+    Y+      +D+    Y 
Sbjct: 226 YEIIKLK---GATFYGIATALARISKAI---LNDENAVLPLSVYMDGQYGLNDI----YI 275

Query: 200 STPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
            TP  + +NGI+  L +  L+D E+E ++ +  +LKK +  
Sbjct: 276 GTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTD 315

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score = 58.7 bits (143), Expect = 3e-10
 Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 31/163 (19%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT------------PSVSFPDDQLKALTGRIQEA 144
           G++P   +  V+G H G + +P+ S                      +Q K +  ++ ++
Sbjct: 178 GVHPLSCHGWVLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDS 236

Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA------Y-VKSDVTEAS 197
             EV+K K   G  + ++  + A  A S+   +K    V   +      Y +K DV    
Sbjct: 237 AYEVIKLK---GYTSWAIGLSVADLAESI---MKNLRRVHPISTMIKGLYGIKEDV---- 286

Query: 198 YFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           + S P  LG+NGI   + +  L+  E+  +K +   L     +
Sbjct: 287 FLSVPCILGQNGISDVVKV-TLTPDEEARLKKSADTLWGIQKE 328

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 30/163 (18%), Positives = 64/163 (39%), Gaps = 31/163 (19%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT-------------PSVSFPDDQLKALTGRIQE 143
           G+N  +V+  + G H G + +PL   AT                    D+ + +   ++ 
Sbjct: 166 GVNVKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKN 224

Query: 144 AGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEAS 197
           A  +++  K   G+   ++  +G     ++   L   + ++   + +K     SD+    
Sbjct: 225 AAYKIINGK---GATNYAIGMSGVDIIEAV---LHDTNRILPVSSMLKDFHGISDI---- 274

Query: 198 YFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
             S P  L + G+   +    +SD E   +K +   LK+  A+
Sbjct: 275 CMSVPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ 316

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 29/161 (18%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT-----------PSVSFPDDQLKALTGRIQEAG 145
           G +P  V+V VIG H G + +P+ S A                     L+    + + A 
Sbjct: 158 GFSPRSVHVYVIGEH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAA 216

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYF 199
            E+++ K   G+   ++A A A    S+      E  V+    Y++      D+      
Sbjct: 217 YEIIERK---GATHYAIALAVADIVESI---FFDEKRVLTLSVYLEDYLGVKDL----CI 266

Query: 200 STPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           S PV LGK+G+E+ L L  L++ E E  + +   LK  I +
Sbjct: 267 SVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAINE 306

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 28/162 (17%), Positives = 55/162 (33%), Gaps = 30/162 (18%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT------------PSVSFPDDQLKALTGRIQEA 144
            + P  V+  V+G H G + + + S A                +   +    +   ++ A
Sbjct: 158 RVAPQSVHAYVLGEH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRA 216

Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASY 198
              +++ K   G+    +    AR   ++   L  E  V    A+        +V     
Sbjct: 217 AYRIIEGK---GATYYGIGAGLARLVRAI---LTDEKGVYTVSAFTPEVAGVLEV----S 266

Query: 199 FSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
            S P  LG  G+   +    LS  E+  ++ +   LK+    
Sbjct: 267 LSLPRILGAGGVAGTVYP-SLSPEERAALRRSAEILKEAAFA 307

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 29/164 (17%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT-----------PSVSFPDDQLKALTGRIQEAG 145
           G  P +V   +IG H G T +P+ S A             + ++  ++L  +   ++ A 
Sbjct: 164 GAAPQNVCAHIIGEH-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAA 222

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASYF 199
             +++ K   G+    +A + AR   ++   L  E++++    Y+       DV    Y 
Sbjct: 223 YHIIEKK---GATYYGVAMSLARITKAI---LHNENSILTVSTYLDGQYGADDV----YI 272

Query: 200 STPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE 243
             P  + + GI     L  L++ EKE    +   LK  +     
Sbjct: 273 GVPAVVNRGGIAGITEL-NLNEKEKEQFLHSAGVLKNILKPHFA 315

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score = 57.0 bits (138), Expect = 8e-10
 Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 17/161 (10%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFPDDQ---LKALTGRIQEAGTEVV 149
           G   + +    + G+   T+      A           +D           + + G  ++
Sbjct: 175 GKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAII 234

Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD----VTEASYFSTPVHL 205
            A+ G  SA  S A A        + G  G+        + SD    + E   F  PV  
Sbjct: 235 DAR-GVSSA-ASAANAAIDHIHDWVLGTAGK--WTTMG-IPSDGSYGIPEGVIFGFPVTT 289

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVA 246
                +   GL  +  F +E +   + EL +     +  + 
Sbjct: 290 ENGEYKIVQGL-SIDAFSQERINVTLNELLEEQNGVQHLLG 329

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score = 56.3 bits (137), Expect = 1e-09
 Identities = 32/162 (19%), Positives = 68/162 (41%), Gaps = 30/162 (18%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT------------PSVSFPDDQLKALTGRIQEA 144
           G++  +V+  +IG H G + +PL S               P  +F ++  K +   ++ A
Sbjct: 165 GVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTA 223

Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVK-----SDVTEASY 198
           G  ++K K   G+    +A +      +L   LK ++ +      +       DV     
Sbjct: 224 GATIIKNK---GATYYGIAVSINTIVETL---LKNQNTIRTVGTVINGMYGIEDV----A 273

Query: 199 FSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
            S P  +   G+++ L    L+  E+E ++ +  ++KK + +
Sbjct: 274 ISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 314

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 21/168 (12%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT--------PSVSFPDDQ---LKALTGRIQEAG 145
           G+   DV   +I G+   T  P ++ A                D           +Q+ G
Sbjct: 171 GVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRG 230

Query: 146 TEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD-----VTEASYFS 200
             V+KA+    SA +S A A       +  G            + SD     V +   +S
Sbjct: 231 AAVIKAR-KLSSA-MSAAKAICDHVRDIWFGTP--EGEFVSMGIISDGNSYGVPDDLLYS 286

Query: 201 TPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS 248
            PV +     +   GL  ++DF +E +     EL +      EF++ +
Sbjct: 287 FPVTIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEFLSSA 333

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score = 54.8 bits (133), Expect = 4e-09
 Identities = 28/161 (17%), Positives = 60/161 (37%), Gaps = 22/161 (13%)

Query: 92  ADQLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFPDD---QLKALTGRIQEA 144
            +    L+P  V+   +G H G +     S       P V+  D     L A+    ++ 
Sbjct: 160 GEAF-DLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKG 217

Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA--YVKSDVTEASYFSTP 202
           G  V+  K   G  +  +A +  R A ++   +      +  +       +    Y S P
Sbjct: 218 GFTVLNGK---GYTSYGVATSAIRIAKAV---MADAHAELVVSNRRDDMGM----YLSYP 267

Query: 203 VHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE 243
             +G++G+     L  L+  E+E +  +   +++   +  +
Sbjct: 268 AIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIVD 307

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score = 54.4 bits (132), Expect = 6e-09
 Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 26/158 (16%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT------------PSVSFPDDQLKALTGRIQEA 144
           G++ T  +  V+G H G + +   S A              ++ + +     +    + A
Sbjct: 156 GVDGTHAHGYVLGEH-GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNA 214

Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVKS-DVTEASYFSTP 202
              +++ K    +    +  A AR   ++   L+    V+   A      V      S P
Sbjct: 215 AASIIEGK---RATYYGIGAALARITEAV---LRDRRAVLTVSAPTPEYGV----SLSLP 264

Query: 203 VHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
             +G+ G+   L   KL+  E++ ++ +   L+    +
Sbjct: 265 RVVGRQGVLSTLHP-KLTGDEQQKLEQSAGVLRGFKQQ 301

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 32/152 (21%), Positives = 51/152 (33%), Gaps = 16/152 (10%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFPDDQ---LKALTGRIQEAGTEVV 149
           G+    V+   I G+   T +P    A     P            +  T  +Q+ G  ++
Sbjct: 200 GVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALI 259

Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD-----VTEASYFSTPVH 204
           +   G  SA  S A + A    SL+     E +      V +      + E   FS P  
Sbjct: 260 QKW-GRSSA-ASTAVSIADAIKSLVTP-TPEGDWFSTG-VYTTGNPYGIAEDIVFSMPCR 315

Query: 205 LGKNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
              +G  +        DF  E +K +  EL  
Sbjct: 316 SKGDGDYELATDVSNDDFLWERIKKSEAELLA 347

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 26/152 (17%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAG 156
               +   V VIG   G   +   S                  ++     E+++ K   G
Sbjct: 167 KAQTSGKEVWVIGEQ-GEDKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVK---G 216

Query: 157 SATLSMAYAGARFAFSLIQGLKGESNVIECA------Y-VKSDVTEASYFSTPVHLGKNG 209
             + S+  + A    S+   +  +  V   +      Y + S+V    + S P  LG NG
Sbjct: 217 QRSWSVGLSVADMVDSI---VNNKKKVHSVSALAKGYYDINSEV----FLSLPCILGTNG 269

Query: 210 IEKNLGLGKLSDFE-KELVKAAVPELKKNIAK 240
           + + +    L +    E ++++   +     +
Sbjct: 270 VSEVIKT-TLKEDTVTEKLQSSASSIHSLQQQ 300

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score = 51.0 bits (123), Expect = 7e-08
 Identities = 32/150 (21%), Positives = 58/150 (38%), Gaps = 24/150 (16%)

Query: 98  LNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGS 157
                    +IG H G ++    S A       +   +A+   ++    EV+K K   G+
Sbjct: 159 GARNIRRAWIIGEH-GDSMFVAKSLADFD---GEVDWEAVENDVRFVAAEVIKRK---GA 211

Query: 158 ATLSMAYAGARFAFSLIQGLKGESNVIECA------YVKSDVTEASYFSTPVHLGKNGIE 211
                A A  R   ++   ++    +I  +      Y   +V        P  LGKNG E
Sbjct: 212 TIFGPAVAIYRMVKAV---VEDTGEIIPTSMILQGEYGIENV----AVGVPAKLGKNGAE 264

Query: 212 K-NLGLGKLSDFEKELVKAAVPELKKNIAK 240
             ++   KLSD E E ++ +   L++ + +
Sbjct: 265 VADI---KLSDEEIEKLRNSAKILRERLEE 291

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 17/151 (11%)

Query: 97  GLNPTDV-NVPVIGGHAGITIIPLISQAT----PSVSFPDDQ--LKALTGRIQEAGTEVV 149
           G     +  + V G H   T+ P +  A     P++   D +   K     + + G  ++
Sbjct: 172 GTGVDRIRRMTVWGNH-SSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAII 230

Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD----VTEASYFSTPVHL 205
           +A+ GA SA  S A A          G   E + +  A V S     + E   +S PV  
Sbjct: 231 QAR-GASSA-ASAANAAIEHIRDWALG-TPEGDWVSMA-VPSQGEYGIPEGIVYSFPV-T 285

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
            K+G  + +   ++++F ++ ++    EL  
Sbjct: 286 AKDGAYRVVEGLEINEFARKRMEITAQELLD 316

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 14/153 (9%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQATPS-----VSFPDDQLKALTGRIQEAGTEVVKA 151
           G++   V   VIG H G ++  + S    +     V     ++  L G    A   VV  
Sbjct: 180 GVHSCLVIGWVIGQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSN 238

Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGESNVIEC-AYVKS--DVTEASYFSTPVHLGKN 208
                +       + A  A ++   +K    V      VK    + +  + S P  L  N
Sbjct: 239 PVDVLTYVAWKGCSVADLAQTI---MKDLCRVHPVSTMVKDFYGIKDNVFLSLPCVLN-N 294

Query: 209 GIEKNLGLG-KLSDFEKELVKAAVPELKKNIAK 240
           GI     +  KL   E++ ++ +   L      
Sbjct: 295 GISHCNIVKMKLKPDEEQQLQKSATTLWDIQKD 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 9e-04
 Identities = 42/246 (17%), Positives = 75/246 (30%), Gaps = 55/246 (22%)

Query: 11  QPLSLLLKQS--PLVDHLSLY--DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD 66
           Q L   +  +     DH S     I++ +             L  LLK  P  + L    
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-----------AELRRLLKSKPYENCL---- 247

Query: 67  IVHTPGVAADLSHIESKAHVQAFNGADQLKGLNPT-DVNVPVIGGHAGITIIPLISQATP 125
           +V        L ++++     AFN     K L  T    V      A  T I L      
Sbjct: 248 LV--------LLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTTHISLDH---H 294

Query: 126 SVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGA-------RFAFSLIQGLK 178
           S++   D++K+L  +  +   + +  +    +    ++            +         
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 179 GESNVIECAY--VKSDVTEASY-----FSTPVHLGKNGIEKNLGLGKL-SDFEKELVKAA 230
             + +IE +   ++       +     F    H     I   L L  +  D  K  V   
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-----IPTIL-LSLIWFDVIKSDVMVV 407

Query: 231 VPELKK 236
           V +L K
Sbjct: 408 VNKLHK 413

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	99.96
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	99.93
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	99.91
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	99.88
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.36
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.91
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	98.81
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.19
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.09
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.02
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.01
4hb9_A	412	Similarities with probable monooxygenase; flavin,	95.89
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.83
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.74
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.72
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.71
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.69
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.67
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.67
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	95.6
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	95.56
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.54
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.54
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.52
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.51
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.47
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.46
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.43
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.42
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.36
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	95.34
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.31
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.28
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	95.27
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.23
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.22
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.21
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.21
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.14
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.05
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.04
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.04
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.03
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.02
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.02
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.01
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	94.96
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.94
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	94.89
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	94.89
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	94.88
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.88
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	94.86
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.83
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	94.82
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.81
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.79
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.77
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	94.77
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.77
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.77
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.76
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	94.76
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	94.76
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	94.75
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	94.73
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	94.72
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.71
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.7
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	94.7
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.68
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	94.68
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.67
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	94.63
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.62
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.62
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.62
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.61
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.59
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	94.58
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	94.57
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	94.54
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.53
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.53
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	94.52
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	94.5
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.48
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	94.47
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	94.46
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.45
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	94.44
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.39
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	94.39
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	94.38
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	94.38
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.38
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.37
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	94.35
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	94.35
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	94.35
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.34
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.31
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.3
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.28
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	94.28
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.27
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	94.26
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.26
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	94.26
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.24
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	94.24
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	94.22
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	94.22
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.21
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	94.2
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	94.19
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	94.19
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	94.16
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.14
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	94.1
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	94.08
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.08
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.07
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.05
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.04
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.04
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.02
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	94.0
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	93.99
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	93.97
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	93.96
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	93.92
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	93.91
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	93.9
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	93.88
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	93.85
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.82
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.81
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.79
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.79
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	93.78
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.74
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	93.72
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.71
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.7
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	93.69
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	93.67
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	93.64
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	93.63
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	93.58
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	93.57
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	93.57
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	93.55
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	93.53
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	93.53
3dme_A	369	Conserved exported protein; structural genomics, P	93.52
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	93.5
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	93.48
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.46
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	93.46
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	93.45
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	93.44
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	93.43
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.42
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	93.42
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	93.41
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	93.4
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	93.39
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	93.38
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	93.36
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	93.36
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	93.35
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.34
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	93.33
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	93.31
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	93.31
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	93.3
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	93.29
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	93.26
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.25
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	93.25
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	93.24
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.24
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	93.19
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	93.14
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	93.14
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.08
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	93.08
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	93.06
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	93.05
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	93.05
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	93.03
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	93.03
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	93.02
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	92.99
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	92.98
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	92.97
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	92.94
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	92.94
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	92.93
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	92.91
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	92.91
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	92.9
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	92.88
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	92.86
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	92.84
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	92.82
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	92.82
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	92.81
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	92.8
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	92.79
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	92.79
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	92.78
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	92.76
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.74
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	92.74
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	92.73
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	92.72
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	92.72
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	92.7
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	92.67
4dqx_A	277	Probable oxidoreductase protein; structural genomi	92.65
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.6
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	92.58
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	92.57
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	92.56
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	92.56
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	92.55
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	92.55
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.55
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.54
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	92.52
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	92.51
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	92.51
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	92.51
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	92.5
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	92.49
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	92.48
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.48
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	92.48
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	92.47
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	92.44
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	92.42
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	92.42
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	92.38
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	92.37
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	92.36
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	92.34
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	92.33
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	92.33
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	92.33
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	92.31
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	92.27
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	92.27
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	92.25
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	92.25
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	92.25
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.22
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	92.21
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	92.19
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	92.18
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	92.16
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	92.15
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	92.15
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.14
3cxt_A	291	Dehydrogenase with different specificities; rossma	92.13
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	92.11
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	92.1
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	92.1
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	92.07
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	92.06
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	92.04
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.98
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	91.96
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	91.96
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	91.95
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	91.95
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	91.94
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	91.94
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	91.91
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	91.9
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	91.87
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	91.85
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	91.85
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	91.85
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	91.84
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	91.83
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	91.82
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	91.81
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	91.8
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	91.79
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	91.75
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	91.75
1xq1_A	266	Putative tropinone reducatse; structural genomics,	91.74
2cul_A	232	Glucose-inhibited division protein A-related PROT	91.73
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	91.73
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	91.72
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	91.71
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	91.68
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	91.67
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	91.66
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	91.65
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	91.62
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	91.62
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	91.6
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	91.59
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	91.58
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	91.58
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	91.57
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	91.57
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	91.56
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	91.55
3imf_A	257	Short chain dehydrogenase; structural genomics, in	91.55
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	91.54
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	91.51
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	91.51
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	91.5
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	91.49
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	91.44
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	91.43
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	91.42
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	91.41
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	91.37
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	91.36
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	91.34
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	91.33
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	91.33
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	91.32
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	91.28
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	91.27
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	91.26
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	91.25
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	91.25
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	91.22
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	91.22
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	91.22
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	91.2
3rih_A	293	Short chain dehydrogenase or reductase; structural	91.19
2bry_A	497	NEDD9 interacting protein with calponin homology a	91.17
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	91.16
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	90.51
3r9u_A	315	Thioredoxin reductase; structural genomics, center	91.15
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	91.14
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	91.14
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	91.12
4f6c_A	427	AUSA reductase domain protein; thioester reductase	91.11
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	91.11
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	91.11
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	91.06
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	91.04
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	91.03
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	91.02
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	91.0
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.98
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	90.94
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	90.92
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	90.91
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	90.9
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	90.89
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	90.88
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.84
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	90.82
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	90.8
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	90.8
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	90.79
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	90.79
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	90.79
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	90.78
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	90.78
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	90.77
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	90.74
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	90.72
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	90.65
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	90.65
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	90.64
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	90.64
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	90.62
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	90.62
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	90.61
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	90.59
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	90.58
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	90.57
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	90.56
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	90.55
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	90.55
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	90.5
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	90.49
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	90.48
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	90.46
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	90.46
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	90.46
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	90.45
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	90.42
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	90.39
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	90.39
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.39
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	90.38
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	90.35
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	90.34
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	90.32
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	90.29
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	90.28
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	90.28
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	90.26
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	90.26
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	90.25
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	90.25
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	90.24
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	90.23
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	90.22
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	90.22
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	90.22
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	90.2
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	90.19
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	90.17
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	90.14
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	90.14
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	90.07
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	90.03
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	90.02
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	90.01
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	89.98
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	89.98
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	89.97
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	89.97
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	89.96
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	89.96
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	89.94
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	89.91
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	89.87
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	89.87
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	89.86
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	89.84
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	89.84
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	89.8
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	89.8
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	89.79
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	89.79
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	89.78
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	89.75
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	89.73
1spx_A	278	Short-chain reductase family member (5L265); paral	89.72
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	89.71
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	89.66
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	89.65
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	89.62
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	89.61
1xhl_A	297	Short-chain dehydrogenase/reductase family member	89.55
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	89.54
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	89.49
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	89.48
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	89.47
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	89.47
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	89.46
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	89.43
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	89.42
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	89.42
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	89.42
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.41
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	89.4
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	89.36
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	89.35

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=2.9e-49  Score=358.84  Aligned_cols=212  Identities=57%  Similarity=0.906  Sum_probs=189.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC-chhhHhhhcCccCCCeEEEEc--Cc-------h---------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH-TPGVAADLSHIESKAHVQAFN--GA-------D---------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~-a~g~a~DL~~~~~~~~v~~~~--~~-------d---------   93 (248)
                      |||+||||+|+||+++|++|+++ ++++||+|+|+++ ++|++|||+|+.++++++.+.  ++       |         
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~   80 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence            69999997799999999999987 8999999999998 889999999987666776542  11       1         


Q ss_pred             -------------------------------------------------------------------------------h
Q psy14621         94 -------------------------------------------------------------------------------Q   94 (248)
Q Consensus        94 -------------------------------------------------------------------------------~   94 (248)
                                                                                                     +
T Consensus        81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~~LD~~R~~~~la~  160 (312)
T 3hhp_A           81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE  160 (312)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEechhHHHHHHHHHH
Confidence                                                                                           7


Q ss_pred             hcCCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHh
Q psy14621         95 LKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLI  174 (248)
Q Consensus        95 ~l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl  174 (248)
                      ++|++|++|++||||||||+||||+||++. -..++++++++|.++|+++|++|+++|.|+|+|+||+|.|+++++++|+
T Consensus       161 ~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~~-g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~ai~  239 (312)
T 3hhp_A          161 LKGKQPGEVEVPVIGGHSGVTILPLLSQVP-GVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV  239 (312)
T ss_dssp             HHTCCGGGCCCCEEECSSGGGEEECGGGCT-TCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HhCcChhHcceeEEeccCCCceeeecccCC-CCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHHHH
Confidence            789999999999999999999999999983 2347788899999999999999999765679999999999999999996


Q ss_pred             cccCCCCeEEEeeEecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621        175 QGLKGESNVIECAYVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK  247 (248)
Q Consensus       175 ~~l~~~~~il~~s~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~  247 (248)
                      .+|+|+++++||+|++++ | +++|||+||++|++|+++++++++||++|+++|++|+++|++.++++++|.++
T Consensus       240 ~~l~~~~~v~~~s~~~g~-g~~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~i~~g~~~~~~  312 (312)
T 3hhp_A          240 RALQGEQGVVECAYVEGD-GQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK  312 (312)
T ss_dssp             HHHTTCSSCEEEEEEECC-CSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHcCCCCceEEEEEecCC-CCcceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            666699999999999977 4 68999999999999999999984599999999999999999999999999763

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=2.1e-48  Score=355.11  Aligned_cols=206  Identities=23%  Similarity=0.414  Sum_probs=178.6

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC-CeEEEEcCc-------h-----
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK-AHVQAFNGA-------D-----   93 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~-~~v~~~~~~-------d-----   93 (248)
                      ..++.+||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|++|||+|+.+. .++++++++       |     
T Consensus         5 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~   83 (326)
T 3vku_A            5 TDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVIT   83 (326)
T ss_dssp             --CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred             ccCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEEC
Confidence            3456789999998 999999999999999999999999988  89999999998742 233333321       1     


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~~k~~g~p~~rviG~gt~LD~~R~~~~la  163 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIA  163 (326)
T ss_dssp             CCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHHHHhcCCCHHHeeeecccCcHHHHHHHHH
Confidence                                                                                            


Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC-------ChHHHHHHHHHHhhccceeeeccCCCCchhHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSM  162 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~-------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~si  162 (248)
                      +++|++|++|++|||||| ||||||+||+++    |+.++       +++++++|.++|+++|++|++   +||+|+||+
T Consensus       164 ~~lgv~~~~V~~~ViGeH-Gdt~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~kG~t~~a~  239 (326)
T 3vku_A          164 KMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIK---LKGATFYGI  239 (326)
T ss_dssp             HHHTSCGGGEECCEEBSS-STTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH---HHSCCCHHH
T ss_pred             HHhCCCHHHCeEEEEcCC-CCeeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---cCCCchHHH
Confidence            888999999999999999 999999999997    44331       567789999999999999999   479999999


Q ss_pred             HHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        163 AYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       163 A~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      |+|+++|+++|+.   |+++++||| |++|+|| +++|||+||++|++|+++++++ +||++|+++|++|+++|++.+++
T Consensus       240 a~a~~~~~~ail~---~~~~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~sa~~L~~~~~~  315 (326)
T 3vku_A          240 ATALARISKAILN---DENAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTD  315 (326)
T ss_dssp             HHHHHHHHHHHHT---TCCEEEEEEEEEEEGGGEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHhc---CCCceEEEEeeccCccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999   899999998 9999999 8999999999999999999999 69999999999999999998887


Q ss_pred             Hhh
Q psy14621        241 GEE  243 (248)
Q Consensus       241 ~l~  243 (248)
                      ...
T Consensus       316 ~~~  318 (326)
T 3vku_A          316 AFA  318 (326)
T ss_dssp             ---
T ss_pred             HHH
Confidence            633

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=9.7e-48  Score=349.12  Aligned_cols=206  Identities=25%  Similarity=0.439  Sum_probs=186.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch--------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD--------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d--------   93 (248)
                      |||+|||| |+||+++|+.|+++++++||+|+|+++  ++|++|||+|+.+    +.++..+.+      +|        
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~   79 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGL   79 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCC
Confidence            79999998 999999999999999999999999998  8999999999864    235543321      11        


Q ss_pred             -----------------------------------------------------------------------------hhc
Q psy14621         94 -----------------------------------------------------------------------------QLK   96 (248)
Q Consensus        94 -----------------------------------------------------------------------------~~l   96 (248)
                                                                                                   +++
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~~k~~g~p~~rviG~~t~LD~~R~~~~la~~l  159 (314)
T 3nep_X           80 PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEEL  159 (314)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHHHHHHTCCGGGEEECCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHHHHhcCCChHHEEeecCchHHHHHHHHHHHHh
Confidence                                                                                         788


Q ss_pred             CCCCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHH
Q psy14621         97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAF  171 (248)
Q Consensus        97 ~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~  171 (248)
                      |++|++|++|||||| ||||||+||+++    |+.+ ++++++++|.++|+++|++|+++| |+ +|+||+|+++++|++
T Consensus       160 gv~~~~v~~~ViG~H-g~t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a~a~~~~~~  236 (314)
T 3nep_X          160 DVSVRDVQALLMGGH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPGAAAAEMTE  236 (314)
T ss_dssp             TCCGGGEEEEEEESS-GGGEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHHHHHHHHHH
T ss_pred             CcCHHHeEEEEECCC-CCcEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHHHHHHHHHH
Confidence            999999999999999 899999999997    6655 567789999999999999999975 45 999999999999999


Q ss_pred             HHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621        172 SLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK  247 (248)
Q Consensus       172 aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~  247 (248)
                      +|+.   |+++++||| |++|+|| +++|||+||++|++||++++++ +||++|+++|++|++.|++.++++.++|++
T Consensus       237 ail~---~~~~v~~~s~~~~g~yg~~~~~~s~P~~lg~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~~~~l~~  310 (314)
T 3nep_X          237 AILK---DNKRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQLKTSAGHVHSNLDDLQRLRDE  310 (314)
T ss_dssp             HHHH---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHc---CCCeEEEEEEEeccccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999   899999998 9999998 8999999999999999999999 699999999999999999999998887764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=6.7e-48  Score=351.80  Aligned_cols=202  Identities=24%  Similarity=0.398  Sum_probs=180.7

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC--CeEEEEcCc-------h------
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK--AHVQAFNGA-------D------   93 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~--~~v~~~~~~-------d------   93 (248)
                      ++.+||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|++|||+|+.+.  .++++++++       |      
T Consensus         3 ~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~a   81 (326)
T 3pqe_A            3 KHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICA   81 (326)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEec
Confidence            45689999998 999999999999999999999999988  89999999998532  234443321       1      


Q ss_pred             -------------------------------------------------------------------------------h
Q psy14621         94 -------------------------------------------------------------------------------Q   94 (248)
Q Consensus        94 -------------------------------------------------------------------------------~   94 (248)
                                                                                                     +
T Consensus        82 g~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~~k~~g~p~~rviG~gt~LD~~R~~~~la~  161 (326)
T 3pqe_A           82 GANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSE  161 (326)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHH
T ss_pred             ccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHHHHhcCCCHHHEEeeccccHHHHHHHHHHH
Confidence                                                                                           8


Q ss_pred             hcCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC-------ChHHHHHHHHHHhhccceeeeccCCCCchhHHHH
Q psy14621         95 LKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMA  163 (248)
Q Consensus        95 ~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~-------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA  163 (248)
                      ++|++|++|++|||||| ||||||+||+++    |+.++       +++++++|.++|+++|++|++   +||+|+||+|
T Consensus       162 ~lgv~~~~V~~~V~GeH-G~t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~kG~t~~a~a  237 (326)
T 3pqe_A          162 YFGAAPQNVCAHIIGEH-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE---KKGATYYGVA  237 (326)
T ss_dssp             HHTCCGGGEECCEEBSS-STTCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHH
T ss_pred             HhCCCHHHceeeeeecC-CCceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeee---CCCCcHHHHH
Confidence            88999999999999999 999999999997    44332       667899999999999999999   4799999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      +|+++|+++|+.   |+++++||| |++|+|| +++|||+||++|++|+++++++ +||++|+++|++|++.|++.+++.
T Consensus       238 ~a~~~~~~ail~---~~~~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~~l~~~~~~~  313 (326)
T 3pqe_A          238 MSLARITKAILH---NENSILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITEL-NLNEKEKEQFLHSAGVLKNILKPH  313 (326)
T ss_dssp             HHHHHHHHHHHT---TCCEEECCEEEEESGGGCEEEEEECCEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc---CCCcEEEEEEeeccccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999   899999998 9999998 8999999999999999999999 699999999999999999988764

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=2.2e-47  Score=343.81  Aligned_cols=192  Identities=24%  Similarity=0.315  Sum_probs=167.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch--------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD--------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d--------   93 (248)
                      |||+|||| |+||+++||+|+++++++||+|||+++  ++|+||||+|+.+    .+++....+      +|        
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~   79 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCC
Confidence            79999998 999999999999999999999999998  8999999999864    234544332      11        


Q ss_pred             -----------------------------------------------------------------------------hhc
Q psy14621         94 -----------------------------------------------------------------------------QLK   96 (248)
Q Consensus        94 -----------------------------------------------------------------------------~~l   96 (248)
                                                                                                   +.+
T Consensus        80 prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~~k~sg~p~~rvig~gT~LDs~R~~~~l~~~~  159 (294)
T 2x0j_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAG  159 (294)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHHHHHSSCCTTSEEECCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhhHHHcCCChhhEEEeeeEEeHHHHHHHHhhcc
Confidence                                                                                         333


Q ss_pred             CCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhcc
Q psy14621         97 GLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQG  176 (248)
Q Consensus        97 ~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~~  176 (248)
                      ++++.  +++||||| ||||||+||+++...   ..+++++.++++++|+||++   +||+|+||+|+++++|+++|++ 
T Consensus       160 ~~~~~--~~~V~G~H-Gdt~vp~~S~~~v~g---~~~~~~i~~~~~~~g~eIi~---~kGst~~a~a~a~~~~~~ail~-  229 (294)
T 2x0j_A          160 ARNIR--RAWIIGEH-GDSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIK---RKGATIFGPAVAIYRMVKAVVE-  229 (294)
T ss_dssp             CEEEC--CCCEEBCS-STTCEECGGGCCEES---CCCHHHHHHHHHTHHHHHHH---HHSSCCHHHHHHHHHHHHHHHT-
T ss_pred             cCCcc--eeEEEecC-CCcEEEeeeccCCCC---chhHHHHHHHHhhhheEEEe---cCcccchhHHHHHHHHHHHHHc-
Confidence            44332  79999999 999999999997421   22467889999999999999   5899999999999999999999 


Q ss_pred             cCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        177 LKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       177 l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                        |+++++||| |++|+|| +++|||+||++|++||+ ++++ +||++|+++|++|++.||+.+++
T Consensus       230 --d~~~v~~~s~~l~g~yG~~~v~~s~P~~lg~~Gve-i~~l-~L~~~E~~~l~~s~~~lk~~i~~  291 (294)
T 2x0j_A          230 --DTGEIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             --TCCCEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             --CCCcEEEEEEEEecCCCCccEEEEEEEEEeCCEEE-EeCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence              999999998 9999999 89999999999999995 8899 69999999999999999998875

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=9.5e-47  Score=343.96  Aligned_cols=205  Identities=25%  Similarity=0.380  Sum_probs=184.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcCc------h-----
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNGA------D-----   93 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~~------d-----   93 (248)
                      ++++||+|||| |+||+++|+.|+.+++. ||+|+|+++  ++|+++||+|+.+    +.++..+.+.      |     
T Consensus         5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~~a~~~aDiVIia   82 (324)
T 3gvi_A            5 MARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGADVVIVT   82 (324)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGTTCSEEEEC
T ss_pred             CcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCHHHHCCCCEEEEc
Confidence            45689999999 99999999999999996 999999998  8899999999863    4456544321      1     


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        83 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~~~LD~~R~~~~la  162 (324)
T 3gvi_A           83 AGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLS  162 (324)
T ss_dssp             CSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHHHHH
T ss_pred             cCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeecCccHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMA  163 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA  163 (248)
                      +++|++|++|+++||||| |+||||+||+++    |+.+      +++++++++.++++++|++|+++| |||+|+||+|
T Consensus       163 ~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-gkgsa~~~~a  240 (324)
T 3gvi_A          163 EEFNVSVEDVTVFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSAFYAPA  240 (324)
T ss_dssp             HHHTCCGGGEECCEEECS-GGGEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCCCCHHHH
T ss_pred             HHhCcCHHHCeEEEEcCC-CCceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc-CCCcHHHHHH
Confidence            788999999999999999 999999999997    5433      367789999999999999999987 8999999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      +|+++|+++|++   |+++++||| |++|+|| +++|||+||++|++|+++++++ +||++|+++|++|++.|++.+++.
T Consensus       241 ~a~~~~~~ail~---~~~~v~~~s~~~~g~yg~~~v~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~~  316 (324)
T 3gvi_A          241 ASAIQMAESYLK---DKKRVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEI-DLDKDEKAQFDKSVASVAGLCEAC  316 (324)
T ss_dssp             HHHHHHHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCcEEEEEEEecCccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   899999999 9999998 8999999999999999999999 699999999999999999999987


Q ss_pred             hh
Q psy14621        242 EE  243 (248)
Q Consensus       242 l~  243 (248)
                      ..
T Consensus       317 ~~  318 (324)
T 3gvi_A          317 IG  318 (324)
T ss_dssp             HH
T ss_pred             hh
Confidence            65

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=2.2e-46  Score=341.09  Aligned_cols=208  Identities=27%  Similarity=0.422  Sum_probs=186.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcCc------h-----
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNGA------D-----   93 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~~------d-----   93 (248)
                      ++++||+|||| |+||+++|+.|+.+++. ||+|+|+++  ++|+++||+|+.+    +.++..+.+.      |     
T Consensus         3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~   80 (321)
T 3p7m_A            3 MARKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVT   80 (321)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEc
Confidence            45689999998 99999999999999997 999999998  7899999999863    3455543321      1     


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        81 ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~~~~LD~~R~~~~la  160 (321)
T 3p7m_A           81 AGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLA  160 (321)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEECHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHhcCCCHHHEEeeccchHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMA  163 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA  163 (248)
                      +++|++|++|++|||||| |+||||+||+++    |+.+      +++++++++.++++++|++|+++| |||+|+||+|
T Consensus       161 ~~l~v~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~gsa~~~~a  238 (321)
T 3p7m_A          161 DELNVSVQQVQAYVMGGH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSAYYAPA  238 (321)
T ss_dssp             HHHTCCGGGEECCEEECS-GGGEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCCHHHH
T ss_pred             HHhCcCHHHceEeeecCc-CCceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CCCChHHHHH
Confidence            788999999999999999 999999999997    5433      367789999999999999999987 8999999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEee-Eec-CCCC-C-ceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECA-YVK-SDVT-E-ASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA  239 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s-~~~-g~yg-~-~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~  239 (248)
                      +|+++++++|++   |+++++||| |++ |+|| + ++|||+||++|++||+++ ++ +||++|+++|++|++.|++.++
T Consensus       239 ~a~~~~~~ail~---~~~~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~l-~L~~~E~~~l~~s~~~l~~~~~  313 (321)
T 3p7m_A          239 AAGIQMAESFLK---DKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EV-EISDKEREQLQVSINAIKDLNK  313 (321)
T ss_dssp             HHHHHHHHHHHT---TCCEEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-CC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc---CCCcEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-CC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   899999999 999 8998 5 999999999999999999 99 6999999999999999999999


Q ss_pred             HHhhhhhc
Q psy14621        240 KGEEFVAK  247 (248)
Q Consensus       240 ~~l~~~~~  247 (248)
                      .+...|.+
T Consensus       314 ~~~~~l~~  321 (321)
T 3p7m_A          314 AAAEILAK  321 (321)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhhC
Confidence            98777653

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=1.8e-46  Score=340.96  Aligned_cols=202  Identities=31%  Similarity=0.457  Sum_probs=182.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC--C--chhhHhhhcCcc----CCCeEEEEcC------ch---
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV--H--TPGVAADLSHIE----SKAHVQAFNG------AD---   93 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~--~--a~g~a~DL~~~~----~~~~v~~~~~------~d---   93 (248)
                      ++.+||+|||| |.+|+++|+.|+.+++ ++++|+|++  +  ++|+++||+|+.    .+.++..+.+      +|   
T Consensus         6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVI   83 (315)
T 3tl2_A            6 IKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVV   83 (315)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEE
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEE
Confidence            34579999998 9999999999999999 999999999  5  889999999985    2345554332      11   


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~~k~sg~p~~rviG~gt~LD~~R~~~~  163 (315)
T 3tl2_A           84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSVFKEAGFPKERVIGQSGVLDTARFRTF  163 (315)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHHHHhcCCChHHEEeeccCcHHHHHHHH
Confidence                                                                                            


Q ss_pred             --hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHH
Q psy14621         94 --QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAG  166 (248)
Q Consensus        94 --~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~  166 (248)
                        +++|++|++|++|||||| ||||||+||+++    |+.+ ++++++++|.++|+++|++|++++ |||+|+||+|+|+
T Consensus       164 la~~lgv~~~~v~~~viG~H-g~t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~~a~a~a~  241 (315)
T 3tl2_A          164 IAQELNLSVKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAYYAPAASL  241 (315)
T ss_dssp             HHHHHTCCGGGEECCEEBCS-GGGCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCCHHHHHHH
T ss_pred             HHHHhCcCHHHceeeEecCC-CCcceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHH
Confidence              788999999999999999 999999999997    6656 677889999999999999999975 7999999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        167 ARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       167 ~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      ++|+++|+.   |+++++||| |++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus       242 ~~~~~ail~---~~~~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~~~  313 (315)
T 3tl2_A          242 VEMTEAILK---DQRRVLPAIAYLEGEYGYSDLYLGVPVILGGNGIEKIIEL-ELLADEKEALDRSVESVRNVMKV  313 (315)
T ss_dssp             HHHHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHc---CCCcEEEEEEeccCccCCCceEEEEEEEEeCCEEEEEcCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999   899999998 9999999 8999999999999999999999 69999999999999999998764

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=9.1e-47  Score=344.91  Aligned_cols=204  Identities=24%  Similarity=0.346  Sum_probs=178.0

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC-C--CeEEEEcC------ch-----
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES-K--AHVQAFNG------AD-----   93 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~-~--~~v~~~~~------~d-----   93 (248)
                      ..+.+||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|++|||+|+.+ +  .++....+      +|     
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSVTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGGGTTEEEEEEC
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHHhCCCCEEEEc
Confidence            345689999998 999999999999999999999999988  8999999999863 2  23332211      11     


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~~k~sg~p~~rviG~gt~LD~~R~~~~la  174 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMG  174 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHH
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHHhCCCHHHEEeeccccHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC--------CChHHHHHHHHHHhhccceeeeccCCCCchhHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS--------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLS  161 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~--------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~s  161 (248)
                      +++|++|++|++|||||| ||||||+||+++    |+.+        ++++++++|.++|+++|++|+++   ||+|+||
T Consensus       175 ~~lgv~~~~V~~~ViGeH-G~s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kg~t~~a  250 (331)
T 4aj2_A          175 ERLGVHPLSCHGWVLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL---KGYTSWA  250 (331)
T ss_dssp             HHHTSCGGGCBCCEEBCS-STTCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHH---HSSCCHH
T ss_pred             HHhCCCHHHCEEeEEecC-CCceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhc---CCCCchh
Confidence            888999999999999999 999999999997    4321        35667899999999999999995   7899999


Q ss_pred             HHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621        162 MAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI  238 (248)
Q Consensus       162 iA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i  238 (248)
                      +|+++++++++|++   |+++++|+| |++|+||  +++|||+||++|++|+++++++ +||++|+++|++|++.|++ +
T Consensus       251 ~a~a~a~~~~ail~---d~~~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~~l~~-~  325 (331)
T 4aj2_A          251 IGLSVADLAESIMK---NLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKSADTLWG-I  325 (331)
T ss_dssp             HHHHHHHHHHHHHT---TCCEEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECC-CCCHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHh---CCCCeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccC-CCCHHHHHHHHHHHHHHHH-H
Confidence            99999999999999   999999998 9999998  5999999999999999999999 6999999999999999998 4


Q ss_pred             HHHhh
Q psy14621        239 AKGEE  243 (248)
Q Consensus       239 ~~~l~  243 (248)
                      .+.++
T Consensus       326 ~~~~~  330 (331)
T 4aj2_A          326 QKELQ  330 (331)
T ss_dssp             HTTCC
T ss_pred             HhhcC
Confidence            44444

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=4.9e-45  Score=331.06  Aligned_cols=215  Identities=71%  Similarity=1.111  Sum_probs=194.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcC----------ch----------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNG----------AD----------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~----------~d----------   93 (248)
                      |||+||||+|+||+++++.|+.+++++||+|+|+++++|+++||+|+..+.+++.+.+          .|          
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            6999999889999999999999999999999999988899999999887666666421          11          


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence                                                                                          78


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhc
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQ  175 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~  175 (248)
                      +|++|++|+++|||||||+|++|+||+++|..++++++++++.++++++|++|+++|.|+|+|+|++|.++++++++|++
T Consensus       161 l~v~~~~v~~~v~G~H~G~~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~~  240 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVD  240 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCCcEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHHc
Confidence            89999999999999998899999999999877788888999999999999999998767899999999999999999999


Q ss_pred             ccCCCCeEEEeeEecCCCCCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q psy14621        176 GLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS  248 (248)
Q Consensus       176 ~l~~~~~il~~s~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~~  248 (248)
                      ++++++.++++++++|+|.+++|||+||++|++|+++++++++|+++|+++|++|++.|++.++++++|.+++
T Consensus       241 ~~~g~~~v~~~~~~~g~y~~~~~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~~l~~~~~~~~~~~~~~  313 (314)
T 1mld_A          241 AMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKNM  313 (314)
T ss_dssp             HHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcCCCcceEEEEEeCCccCCceEEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5443668999899999997899999999999999999989855999999999999999999999999998753

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=1.5e-44  Score=325.36  Aligned_cols=193  Identities=24%  Similarity=0.307  Sum_probs=174.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcCc------h--------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNGA------D--------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~~------d--------   93 (248)
                      |||+|||| |++|+++|+.|+.+++++||+|+|+++  ++|+++||+|+.+    +.+++.+++.      |        
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCCHHHhCCCCEEEECCCC
Confidence            69999999 999999999999999999999999998  8899999999862    3466655431      1        


Q ss_pred             ----------------------------------------------------------------------------hhcC
Q psy14621         94 ----------------------------------------------------------------------------QLKG   97 (248)
Q Consensus        94 ----------------------------------------------------------------------------~~l~   97 (248)
                                                                                                  .+++
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~~k~~g~p~~rviG~gt~LD~~R~~~~la~l~  159 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAG  159 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHHHHHSCCCTTSEEECSHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHHHHhcCCCHHHEeecccccHHHHHHHHHHHhC
Confidence                                                                                        4679


Q ss_pred             CCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhccc
Q psy14621         98 LNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGL  177 (248)
Q Consensus        98 v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~~l  177 (248)
                      ++|++ ++|||||| ||||||+||+++.- ..+  ++++|.++|+++|++|+++   ||+|+||+|+|+++|+++|+.  
T Consensus       160 v~~~~-~~~V~G~H-g~t~vp~~s~~~v~-g~~--~~~~~~~~v~~~g~eii~~---kG~t~~~~a~a~~~~~~ail~--  229 (294)
T 1oju_A          160 ARNIR-RAWIIGEH-GDSMFVAKSLADFD-GEV--DWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYRMVKAVVE--  229 (294)
T ss_dssp             CBSCC-CCCEEBCS-STTCEECGGGCCCB-SCC--CHHHHHHHHHTTHHHHHHH---HSSCCHHHHHHHHHHHHHHHT--
T ss_pred             CCccC-ceEEEecC-CCceeeecccceEC-CcC--hHHHHHHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHc--
Confidence            99999 99999999 99999999999732 122  5889999999999999995   789999999999999999999  


Q ss_pred             CCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        178 KGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       178 ~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                       |+++++||| |++|+|| +++|||+||++|++||+ ++++ +|+++|+++|++|+++|++.+++
T Consensus       230 -~~~~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~-v~~l-~L~~~E~~~l~~s~~~l~~~~~~  291 (294)
T 1oju_A          230 -DTGEIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLEE  291 (294)
T ss_dssp             -TCCCEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             -CCCeEEEEEecccccCCCCceEEEEEEEEeCCEEE-EecC-CCCHHHHHHHHHHHHHHHHHHHh
Confidence             899999999 9999998 89999999999999999 9999 69999999999999999998875

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=4.6e-44  Score=331.26  Aligned_cols=210  Identities=19%  Similarity=0.183  Sum_probs=176.7

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcce---EEEEecCC------chhhHhhhcCccCC--CeEEEEcCch------
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDH---LSLYDIVH------TPGVAADLSHIESK--AHVQAFNGAD------   93 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~e---lvLiDi~~------a~g~a~DL~~~~~~--~~v~~~~~~d------   93 (248)
                      ++++||+||||+|+||+++||+|+++++++|   |+|+|++.      ++|++|||+|+.++  .+++++++++      
T Consensus        30 ~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~da  109 (375)
T 7mdh_A           30 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDV  109 (375)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCC
Confidence            3568999999779999999999999999998   77766543      69999999999864  3566655421      


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus       110 DvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia~k~sg~~~~rvig~gT~LDsa  189 (375)
T 7mdh_A          110 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAPDIPAKNFHALTRLDEN  189 (375)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHH
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHcCCCCccEEEeeehHHHH
Confidence                                                                                            


Q ss_pred             -------hhcCCCCCCeeE-eEEeccCCCcccccccCcc----cCCCCC-hHH--HHHHHHHHhhccceeeeccCCCCch
Q psy14621         94 -------QLKGLNPTDVNV-PVIGGHAGITIIPLISQAT----PSVSFP-DDQ--LKALTGRIQEAGTEVVKAKAGAGSA  158 (248)
Q Consensus        94 -------~~l~v~p~~V~~-~ViGeHsGds~vp~wS~a~----p~~~~~-~~~--~~~i~~~v~~~g~eIi~~k~gkgst  158 (248)
                             +++|++|++|++ |||||| ||||||+||+++    |+.++. ++.  .++|.++|+++|++||++   ||+|
T Consensus       190 R~r~~lA~~lgv~~~~V~~v~V~GeH-gdt~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~---kG~t  265 (375)
T 7mdh_A          190 RAKCQLALKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQK---WGRS  265 (375)
T ss_dssp             HHHHHHHHHTTSCGGGEECCEEEBCS-STTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHH---TSSC
T ss_pred             HHHHHHHHHhCcChhhcccceEEecC-CCceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHh---cCCC
Confidence                   889999999985 899999 899999999998    776643 332  478999999999999995   5677


Q ss_pred             hHHHHHHHHHHHHHHhccc--CCCCeEEEee-EecC-CCC--CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHH
Q psy14621        159 TLSMAYAGARFAFSLIQGL--KGESNVIECA-YVKS-DVT--EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAV  231 (248)
Q Consensus       159 ~~siA~a~~~iv~aIl~~l--~~~~~il~~s-~~~g-~yg--~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa  231 (248)
                      +|  |.++++++++|+..+  +|+++++||| |++| +||  +++|||+||++|++|++++++ + +|+++|+++|++|+
T Consensus       266 s~--a~aa~~i~~~i~~~l~g~d~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l-~L~~~E~~~l~~Sa  342 (375)
T 7mdh_A          266 SA--ASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDV-SNDDFLWERIKKSE  342 (375)
T ss_dssp             CH--HHHHHHHHHHHHHHHSCCCTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCC-CCCHHHHHHHHHHH
T ss_pred             ch--HHHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCC-CCCHHHHHHHHHHH
Confidence            66  567777777776322  1789999999 9999 698  699999999999999999995 8 69999999999999


Q ss_pred             HHHHHHHHHHhhhhhc
Q psy14621        232 PELKKNIAKGEEFVAK  247 (248)
Q Consensus       232 ~~I~~~i~~~l~~~~~  247 (248)
                      ++|+++++.+..+|..
T Consensus       343 ~~L~~e~~~~~~~~~~  358 (375)
T 7mdh_A          343 AELLAEKKCVAHLTGE  358 (375)
T ss_dssp             HHHHHHHHHTHHHHTS
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999988877754

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=1.6e-44  Score=331.44  Aligned_cols=204  Identities=22%  Similarity=0.323  Sum_probs=177.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC-CeEEEEcCc-------h--------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK-AHVQAFNGA-------D--------   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~-~~v~~~~~~-------d--------   93 (248)
                      +++||+||||+|+||+++|+.++.+++++||+|+|+++  ++|++|||+|+.++ .+++.+++.       |        
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG~   86 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGA   86 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccCC
Confidence            45799999988999999999999999999999999988  89999999998653 355543331       1        


Q ss_pred             -----------------------------------------------------------------------------hhc
Q psy14621         94 -----------------------------------------------------------------------------QLK   96 (248)
Q Consensus        94 -----------------------------------------------------------------------------~~l   96 (248)
                                                                                                   +++
T Consensus        87 p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~~k~sg~p~~rv~g~t~LDs~R~~~~la~~l  166 (343)
T 3fi9_A           87 PRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVTLIYSGLKPSQVTTLAGLDSTRLQSELAKHF  166 (343)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHHHHHHTCCGGGEEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHHHHHcCCCcceEEEecCcHHHHHHHHHHHHh
Confidence                                                                                         788


Q ss_pred             CCCCCCee-EeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCC-chhHHHHH
Q psy14621         97 GLNPTDVN-VPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAG-SATLSMAY  164 (248)
Q Consensus        97 ~v~p~~V~-~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkg-st~~siA~  164 (248)
                      |++|++|+ +|||||| ||||||+||+++    |+.+      ++++++++|.++|+++|++|+++   || +++||+|+
T Consensus       167 ~v~~~~v~~~~ViGeH-gds~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---kg~ss~~s~A~  242 (343)
T 3fi9_A          167 GIKQSLVTNTRTYGGH-GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKL---RGRSSFQSPSY  242 (343)
T ss_dssp             TSCGGGEECCCEEESS-GGGEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHH---HSSCCCHHHHH
T ss_pred             CcCHHHcccceEEEcC-CCceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHc---cCCCcHHhHHH
Confidence            99999997 8999999 899999999996    6644      36778999999999999999996   45 45679999


Q ss_pred             HHHHHHHHHhcccCCCCeEEEee-EecCCCCCceEEEeeEEEcCCcEEEEecCCC-CCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        165 AGARFAFSLIQGLKGESNVIECA-YVKSDVTEASYFSTPVHLGKNGIEKNLGLGK-LSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       165 a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~l~~-Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                      |+++++++|++   |+++++|+| |++++|.+++|||+||++|++||+++ ++++ |+++|+++|++|++.|++.++.+.
T Consensus       243 a~~~~~~ail~---d~~~v~~~s~~~~g~~~~~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~~l~~~~~~~~  318 (343)
T 3fi9_A          243 VSIEMIRAAMG---GEAFRWPAGCYVNVPGFEHIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYSHLAKLRDEVI  318 (343)
T ss_dssp             HHHHHHHHHTT---SSCCCSCEEEEEEETTEEEEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh---CCCceEEEEEEEeCCCcCceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   899999987 99987547999999999999999986 5512 899999999999999999998875


Q ss_pred             h
Q psy14621        243 E  243 (248)
Q Consensus       243 ~  243 (248)
                      .
T Consensus       319 ~  319 (343)
T 3fi9_A          319 A  319 (343)
T ss_dssp             H
T ss_pred             H
Confidence            4

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=2.7e-44  Score=328.85  Aligned_cols=208  Identities=24%  Similarity=0.314  Sum_probs=179.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcce-----EEEEecCC----chhhHhhhcCccCCC--eEEEEcCc-------h
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDH-----LSLYDIVH----TPGVAADLSHIESKA--HVQAFNGA-------D   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~e-----lvLiDi~~----a~g~a~DL~~~~~~~--~v~~~~~~-------d   93 (248)
                      +++||+|+||+|+||+++||+|+.+++++|     |+|+|+++    ++|++|||+|++++.  ++.++++.       |
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daD   81 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD   81 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCC
Confidence            467999999889999999999999999999     99999974    789999999986432  34443321       1


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        82 vVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~~~~~~~~p~~~ig~~t~LDs~R  161 (333)
T 5mdh_A           82 VAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNR  161 (333)
T ss_dssp             EEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHHH
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHHHHHcCCCCcCEEEEEEhHHHHH
Confidence                                                                                            


Q ss_pred             ------hhcCCCCCCeeEe-EEeccCCCcccccccCccc-CC-------C-CChH--HHHHHHHHHhhccceeeeccCCC
Q psy14621         94 ------QLKGLNPTDVNVP-VIGGHAGITIIPLISQATP-SV-------S-FPDD--QLKALTGRIQEAGTEVVKAKAGA  155 (248)
Q Consensus        94 ------~~l~v~p~~V~~~-ViGeHsGds~vp~wS~a~p-~~-------~-~~~~--~~~~i~~~v~~~g~eIi~~k~gk  155 (248)
                            ++++++|++|++| ||||| ||||||+||++++ +.       + ++++  ..+++.++|+++|++|+++|  +
T Consensus       162 ~~~~la~~l~v~~~~v~~~vV~GeH-gds~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k--~  238 (333)
T 5mdh_A          162 AKAQIALKLGVTSDDVKNVIIWGNH-SSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR--K  238 (333)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEEBCS-STTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHHHH--S
T ss_pred             HHHHHHHHhCcCHHHeeecEEEEcC-CCCEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHHcc--C
Confidence                  8889999999998 59999 8999999999963 11       1 1122  24689999999999999974  5


Q ss_pred             CchhHHHHHHHHHHHHHHhcccCCC--CeEEEee-EecC-CCC--CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHH
Q psy14621        156 GSATLSMAYAGARFAFSLIQGLKGE--SNVIECA-YVKS-DVT--EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVK  228 (248)
Q Consensus       156 gst~~siA~a~~~iv~aIl~~l~~~--~~il~~s-~~~g-~yg--~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~  228 (248)
                      +++.|++|.++++++++|+.   |+  ++++||| |++| +||  +++|||+||++ ++|++++++ + +||++|+++|+
T Consensus       239 ~ssa~~~a~~~~~~~~~il~---~~~~~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l-~L~~~E~~~l~  313 (333)
T 5mdh_A          239 LSSAMSAAKAICDHVRDIWF---GTPEGEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGL-PINDFSREKMD  313 (333)
T ss_dssp             SCCCHHHHHHHHHHHHHHHH---CCCTTCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCC-CCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHhc---CCCCCeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCC-CCCHHHHHHHH
Confidence            67899999999999999999   64  5899999 9999 998  59999999999 999999997 8 69999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhc
Q psy14621        229 AAVPELKKNIAKGEEFVAK  247 (248)
Q Consensus       229 ~Sa~~I~~~i~~~l~~~~~  247 (248)
                      +|+++|+++++.+++|++.
T Consensus       314 ~sa~~L~~~~~~~~~~l~~  332 (333)
T 5mdh_A          314 LTAKELAEEKETAFEFLSS  332 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999875

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.1e-43  Score=323.90  Aligned_cols=210  Identities=24%  Similarity=0.407  Sum_probs=181.9

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC-CCeEEEEcCc-------h-----
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES-KAHVQAFNGA-------D-----   93 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~-~~~v~~~~~~-------d-----   93 (248)
                      +.++++||+|||| |+||++++++|+++++++||+|+|+++  ++|+++||+|+.+ ..+++++.+.       |     
T Consensus         5 ~~~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            5 TDKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVIT   83 (326)
T ss_dssp             -CCCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEEC
T ss_pred             ccCCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEc
Confidence            3445689999999 999999999999999999999999987  8999999999862 1222222221       1     


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~la  163 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIA  163 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEccccchHHHHHHHHH
Confidence                                                                                            


Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-------CChHHHHHHHHHHhhccceeeeccCCCCchhHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSM  162 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~si  162 (248)
                      +++|++|++|+++||||| |+|+||+||+++    |+.+       ++++.++++.++++++|++|++   +||+|+|++
T Consensus       164 ~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~---~kG~t~~~~  239 (326)
T 2zqz_A          164 EMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKGATFYGI  239 (326)
T ss_dssp             HHHTCCGGGEECCEEBSS-STTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHH---HHSCCCHHH
T ss_pred             HHhCCChhheEEEEeccc-CCceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHH---cCCCcHHHH
Confidence            888999999999999999 999999999987    3321       5566788999999999999999   578999999


Q ss_pred             HHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        163 AYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       163 A~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      |.|+++++++|+.   |+++++|++ |++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++.
T Consensus       240 a~aa~~~~~ai~~---~~~~~~~vsv~~~G~yg~~~~~~svP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~  315 (326)
T 2zqz_A          240 ATALARISKAILN---DENAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTD  315 (326)
T ss_dssp             HHHHHHHHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh---CCCcEEEEEEeccCccCCCceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999   899999998 9999998 7999999999999999999999 69999999999999999999999


Q ss_pred             Hhhhhhc
Q psy14621        241 GEEFVAK  247 (248)
Q Consensus       241 ~l~~~~~  247 (248)
                      +.+++++
T Consensus       316 ~~~~~~~  322 (326)
T 2zqz_A          316 AFAKNDI  322 (326)
T ss_dssp             HC-----
T ss_pred             HHHhhhh
Confidence            9998875

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.8e-43  Score=321.36  Aligned_cols=207  Identities=24%  Similarity=0.414  Sum_probs=184.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC-CeEEEEcC-------ch--------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK-AHVQAFNG-------AD--------   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~-~~v~~~~~-------~d--------   93 (248)
                      +++||+|||| |+||+++++.|+++++++||+|+|+++  ++|+++||+|+.+. .+++++.+       +|        
T Consensus         4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~   82 (318)
T 1ez4_A            4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGA   82 (318)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCC
Confidence            3479999999 999999999999999999999999987  89999999998621 22222222       11        


Q ss_pred             -----------------------------------------------------------------------------hhc
Q psy14621         94 -----------------------------------------------------------------------------QLK   96 (248)
Q Consensus        94 -----------------------------------------------------------------------------~~l   96 (248)
                                                                                                   +++
T Consensus        83 ~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~la~~l  162 (318)
T 1ez4_A           83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQF  162 (318)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEeccccchHHHHHHHHHHHh
Confidence                                                                                         888


Q ss_pred             CCCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHH
Q psy14621         97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAG  166 (248)
Q Consensus        97 ~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~  166 (248)
                      |++|++|+++||||| |+|+||+||+++    |+.+      ++++.++++.++++++|++|++   +||+|+|++|.|+
T Consensus       163 gv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~~~~a~a~  238 (318)
T 1ez4_A          163 NVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGATFYGIGTAL  238 (318)
T ss_dssp             TCCGGGEECCEESSS-SSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHHHHH
T ss_pred             CcChhHEEEEEeccc-CCceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhhee---CCCcchHHHHHHH
Confidence            999999999999999 999999999987    3322      5667789999999999999999   5889999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14621        167 ARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEF  244 (248)
Q Consensus       167 ~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~  244 (248)
                      ++++++|+.   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++.+.++
T Consensus       239 ~~~~~ai~~---~~~~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~~~~  314 (318)
T 1ez4_A          239 MRISKAILR---DENAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVLNDGLAE  314 (318)
T ss_dssp             HHHHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh---CCCcEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999   899999998 9999998 7999999999999999999999 699999999999999999999999888


Q ss_pred             hhc
Q psy14621        245 VAK  247 (248)
Q Consensus       245 ~~~  247 (248)
                      +..
T Consensus       315 ~~~  317 (318)
T 1ez4_A          315 LEN  317 (318)
T ss_dssp             HTC
T ss_pred             hhc
Confidence            764

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=1.9e-42  Score=315.41  Aligned_cols=216  Identities=52%  Similarity=0.871  Sum_probs=190.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcC----------ch-------
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNG----------AD-------   93 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~----------~d-------   93 (248)
                      .+++||+||||+|+||+++++.|+.++++.||+|+|+++.+|+++||.|...+.++..+.+          .|       
T Consensus         6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            3568999999779999999999999999999999999877899999999765545544221          11       


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        86 ~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~l  165 (326)
T 1smk_A           86 VPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFV  165 (326)
T ss_dssp             CCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -hhcCCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHH
Q psy14621         94 -QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFS  172 (248)
Q Consensus        94 -~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~a  172 (248)
                       +++|++|++|+++|||||+|||+||+||++++..+++++.++++.++++++|++|++.|.|+|+|+||+|.++++|+++
T Consensus       166 a~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~a  245 (326)
T 1smk_A          166 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADA  245 (326)
T ss_dssp             HHHHTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhCcChhheEEEEecccCCceEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHH
Confidence             7889999999999999999999999999998655688888999999999999999997656799999999999999999


Q ss_pred             HhcccCCCCeEEEeeEecCCCCCceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621        173 LIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAVPELKKNIAKGEEFVAK  247 (248)
Q Consensus       173 Il~~l~~~~~il~~s~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~  247 (248)
                      |+..++|+++++|+++++|+|++++|||+||++|++|++++++ + +|+++|+++|++|++.|++.++.+.+|...
T Consensus       246 i~~~~~~~~~v~~~~~~~g~~~~~~~~~vP~~ig~~Gv~~i~~~~-~L~~~e~~~l~~s~~~l~~~~~~~~~~~~~  320 (326)
T 1smk_A          246 CLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLG-PLNEYERIGLEKAKKELAGSIEKGVSFIRS  320 (326)
T ss_dssp             HHHHHHTCSCEEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCCeEEEEEeeccccCCceEEEEEEEEeCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9333339999999998888888889999999999999999999 7 799999999999999999999999998754

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=4.1e-43  Score=322.29  Aligned_cols=209  Identities=24%  Similarity=0.322  Sum_probs=161.2

Q ss_pred             ccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCCC--eEEEEcCc-
Q psy14621         25 HLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESKA--HVQAFNGA-   92 (248)
Q Consensus        25 ~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~~--~v~~~~~~-   92 (248)
                      .+.+..++..||+|+||||+||+++||+|++.++++     ||+|+|+++    ++|++|||+|++++.  ++.+.++. 
T Consensus        16 ~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~   95 (345)
T 4h7p_A           16 TQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPR   95 (345)
T ss_dssp             ------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHH
T ss_pred             ccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChH
Confidence            466777788899999999999999999999999887     999999987    589999999998765  33333321 


Q ss_pred             ------h-------------------------------------------------------------------------
Q psy14621         93 ------D-------------------------------------------------------------------------   93 (248)
Q Consensus        93 ------d-------------------------------------------------------------------------   93 (248)
                            |                                                                         
T Consensus        96 ~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~~~~g~~~~r~i~~  175 (345)
T 4h7p_A           96 VAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLKSAQGKLNPRHVTA  175 (345)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHHTTTCSCGGGEEE
T ss_pred             HHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHHHccCCCCcceeee
Confidence                  1                                                                         


Q ss_pred             --------------hhcCCCCCCee-EeEEeccCCCcccccccCcc----cCCC-CChHH-HHHHHHHHhhccceeeecc
Q psy14621         94 --------------QLKGLNPTDVN-VPVIGGHAGITIIPLISQAT----PSVS-FPDDQ-LKALTGRIQEAGTEVVKAK  152 (248)
Q Consensus        94 --------------~~l~v~p~~V~-~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~-~~~i~~~v~~~g~eIi~~k  152 (248)
                                    +++|++|++|+ .+||||| |+||||+||+++    |+.+ ++++. .+++.++++++|++|+++|
T Consensus       176 ~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~H-G~t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k  254 (345)
T 4h7p_A          176 MTRLDHNRALSLLARKAGVPVSQVRNVIIWGNH-SSTQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEIIQLR  254 (345)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCS-STTCEEECTTCEETTEEGGGGCCC------HHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHCcChhheecceeecCC-CCeEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhhhhhhcC
Confidence                          88999999997 4588999 999999999997    5544 33333 3579999999999999985


Q ss_pred             CCCCchhHHHHHHHHHHHHHHhcccCCCCeEEE--ee-Ee-cCCCC--CceEEEeeEEEcCCcEEEEe-cCCCCCHHHHH
Q psy14621        153 AGAGSATLSMAYAGARFAFSLIQGLKGESNVIE--CA-YV-KSDVT--EASYFSTPVHLGKNGIEKNL-GLGKLSDFEKE  225 (248)
Q Consensus       153 ~gkgst~~siA~a~~~iv~aIl~~l~~~~~il~--~s-~~-~g~yg--~~v~~s~Pv~lg~~Gv~~i~-~l~~Ls~~E~~  225 (248)
                        +++|+|++|.|+++++++|++   |++...+  ++ |. +|+||  +++|||+||++++ |+++++ .+ +|+++|++
T Consensus       255 --g~ss~~s~a~a~~~~~~~~l~---~~~~~~~vs~~v~s~~g~YGi~~~v~~s~Pv~~~~-G~~~iv~~l-~l~~~e~~  327 (345)
T 4h7p_A          255 --GLSSAMSAAKAAVDHVHDWIH---GTPEGVYVSMGVYSDENPYGVPSGLIFSFPCTCHA-GEWTVVSGK-LNGDLGKQ  327 (345)
T ss_dssp             --SSCCCHHHHHHHHHHHHHHHH---CCCTTCCEEEEEECTTCTTCCCSSCEEEEEEEEET-TEEEECCSC-C-----CG
T ss_pred             --CCcchhhHHHHHHHHHHHHhc---CCCCceEEEEEEEeCCCCcCCCCCEEEEEEEEEeC-CEEEEeCCC-CCCHHHHH
Confidence              568899999999999999999   6655444  44 44 58898  7999999999985 555666 47 69999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy14621        226 LVKAAVPELKKNIAKG  241 (248)
Q Consensus       226 ~L~~Sa~~I~~~i~~~  241 (248)
                      +|++|+++|+++++.+
T Consensus       328 ~l~~s~~~L~~E~~~A  343 (345)
T 4h7p_A          328 RLASTIAELQEERAQA  343 (345)
T ss_dssp             GGHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            9999999999987653

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=1.5e-43  Score=323.21  Aligned_cols=190  Identities=22%  Similarity=0.270  Sum_probs=170.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC---CCeEEEEcC------ch-------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES---KAHVQAFNG------AD-------   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~---~~~v~~~~~------~d-------   93 (248)
                      +.+||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+.+   ..++..+.+      +|       
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSVSAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCSCSSCSEEEECCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHHhCCCCEEEEeCC
Confidence            5689999999 999999999999999999999999988  8999999999843   234443322      11       


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~~k~sg~p~~rViG~gt~LDs~R~~~~lA~~  178 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGER  178 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHCCCGGGEECCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHHHHHhCCCHHHeecccCchhHHHHHHHHHHH
Confidence                                                                                          88


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHH-----------
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAY-----------  164 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~-----------  164 (248)
                      +|++|++|++|||||| ||||||+||+     ++    .+++.++|+++|++|++   .||+|+||+|+           
T Consensus       179 lgv~~~~V~~~V~G~H-g~t~vp~~S~-----~~----~~~~~~~v~~~g~eii~---~kg~t~~a~a~~~~~~~~~~~~  245 (330)
T 3ldh_A          179 LGVHSCLVIGWVIGQH-GDSVPSVWSG-----MW----DAKLHKDVVDSAYEVIK---LKGYTSWAIGLVVSNPVDVLTY  245 (330)
T ss_dssp             HTSCTTTCCEEECSSS-STTCCEEEEE-----EE----ETTEEHHHHHCCCTTST---TCHHHHHHHHHTTHHHHTTSSS
T ss_pred             hCCCHHHeEEEEEcCC-CCceeeechh-----hH----HHHHHHHHHHHHHHHHH---ccCCcceeeeeeccCccchhhh
Confidence            8999999999999999 9999999999     11    26788999999999999   47899999999           


Q ss_pred             ------HHHHHHHHHhcccCCCCeEEEee-EecCCCC-C-ceEEEeeEEEcCCcEEE--EecCCCCCHHHHHHHHHHHHH
Q psy14621        165 ------AGARFAFSLIQGLKGESNVIECA-YVKSDVT-E-ASYFSTPVHLGKNGIEK--NLGLGKLSDFEKELVKAAVPE  233 (248)
Q Consensus       165 ------a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~-~v~~s~Pv~lg~~Gv~~--i~~l~~Ls~~E~~~L~~Sa~~  233 (248)
                            ++++|+++|+.   |+++++||| |++|+|| + ++|||+||++| +|+++  ++++ +|+++|+++|++|++.
T Consensus       246 ~~~~~~a~~~~~~ail~---~~~~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~Gv~~~~iv~~-~L~~~E~~~l~~s~~~  320 (330)
T 3ldh_A          246 VAWKGCSVADLAQTIMK---DLCRVHPVSTMVKDFYGIKDNVFLSLPCVLN-NGISHCNIVKM-KLKPDEEQQLQKSATT  320 (330)
T ss_dssp             CSCTHHHHHHHHHHHHH---TCCEEECCBCCCSSSSSCCSCCCCBCCEEEB-TTBCTTCCCCC-CCCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHc---CCCceEEEEeecCCccCCCCceEEEEEEEEC-CcEEEcceecC-CCCHHHHHHHHHHHHH
Confidence                  99999999999   999999998 9999998 4 99999999999 99999  9999 7999999999999999


Q ss_pred             HHHHHHH
Q psy14621        234 LKKNIAK  240 (248)
Q Consensus       234 I~~~i~~  240 (248)
                      |++.++.
T Consensus       321 l~~~~~~  327 (330)
T 3ldh_A          321 LWDIQKD  327 (330)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9998865

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=4.4e-42  Score=312.16  Aligned_cols=203  Identities=20%  Similarity=0.346  Sum_probs=176.0

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC-CeEEEEcC-------ch-------
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK-AHVQAFNG-------AD-------   93 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~-~~v~~~~~-------~d-------   93 (248)
                      ++++||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+.+. .+++++.+       +|       
T Consensus         5 ~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g   83 (318)
T 1y6j_A            5 KSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAG   83 (318)
T ss_dssp             --CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCC
Confidence            35689999999 999999999999999999999999998  89999999998631 22222211       11       


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        84 ~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld~~r~~~~la~~  163 (318)
T 1y6j_A           84 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEK  163 (318)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEECTTHHHHHHHHHHHHTT
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEeccCCchHHHHHHHHHHHH
Confidence                                                                                          88


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC--------ChHHHHHHHHHHhhccceeeeccCCCCchhHHHH
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF--------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMA  163 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~--------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA  163 (248)
                      +|++|++|++|||||| |+|+||+||+++    |+.++        +++.++++.++++++|++|++   +||+|+|++|
T Consensus       164 lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~~~~a  239 (318)
T 1y6j_A          164 LGVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---NKGATYYGIA  239 (318)
T ss_dssp             TTCCTTTEECCEEBCS-SSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHH---HTSCCCHHHH
T ss_pred             hCCCHHHeEEEEeccc-CCcEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhh---CCCccHHHHH
Confidence            8999999999999999 999999999987    55443        344478999999999999999   5889999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      .++++++++|++   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++++
T Consensus       240 ~a~~~~~~ai~~---~~~~~~~~~~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~  315 (318)
T 1y6j_A          240 VSINTIVETLLK---NQNTIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNEV  315 (318)
T ss_dssp             HHHHHHHHHHHH---TCCCEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHc---CCCcEEEEEEeecCccCCcceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   899999998 9999998 8999999999999999999999 799999999999999999998865


Q ss_pred             h
Q psy14621        242 E  242 (248)
Q Consensus       242 l  242 (248)
                      .
T Consensus       316 ~  316 (318)
T 1y6j_A          316 K  316 (318)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=1.9e-42  Score=313.65  Aligned_cols=199  Identities=21%  Similarity=0.283  Sum_probs=178.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC---CCeEEEE-----cCch----------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES---KAHVQAF-----NGAD----------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~---~~~v~~~-----~~~d----------   93 (248)
                      +||+|||| |+||++++++|+++++++||+|+|+++  ++|+++||+|+.+   +.+++..     .|+|          
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~   79 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQ   79 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence            69999999 999999999999999999999999998  8999999999863   2344321     0111          


Q ss_pred             ---------------------------------------------------------------------------hhcCC
Q psy14621         94 ---------------------------------------------------------------------------QLKGL   98 (248)
Q Consensus        94 ---------------------------------------------------------------------------~~l~v   98 (248)
                                                                                                 +++|+
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~la~~lgv  159 (310)
T 2xxj_A           80 RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRV  159 (310)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCGGGEEECTTHHHHHHHHHHHHHHHTS
T ss_pred             CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHHcCCCHHHEEecCcchhHHHHHHHHHHHhCc
Confidence                                                                                       88899


Q ss_pred             CCCCeeEeEEeccCCCcccccccCcc----cCCC--------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHH
Q psy14621         99 NPTDVNVPVIGGHAGITIIPLISQAT----PSVS--------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAG  166 (248)
Q Consensus        99 ~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~--------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~  166 (248)
                      +|++|++|||||| |+|+||+||+++    |+.+        ++++.++++.++++++|++|++   +||+|+|++|.++
T Consensus       160 ~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~~~~a~a~  235 (310)
T 2xxj_A          160 APQSVHAYVLGEH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGL  235 (310)
T ss_dssp             CGGGEEEEEEBCS-STTCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHH---HHSCCCHHHHHHH
T ss_pred             CHHHeEEEEeccc-CCccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHh---ccCCcHHHHHHHH
Confidence            9999999999999 999999999986    3322        3667789999999999999999   5789999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        167 ARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       167 ~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      ++++++|++   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       236 ~~~~~ai~~---~~~~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~  308 (310)
T 2xxj_A          236 ARLVRAILT---DEKGVYTVSAFTPEVAGVLEVSLSLPRILGAGGVAGTVYP-SLSPEERAALRRSAEILKEAAFAL  308 (310)
T ss_dssp             HHHHHHHHT---TCCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc---CCCCEEEEEEEEcCccCCccEEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999   899999998 9999998 8999999999999999999999 699999999999999999998865

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=6e-42  Score=309.15  Aligned_cols=198  Identities=26%  Similarity=0.422  Sum_probs=176.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec--CC--chhhHhhhcCccC---CCeEE-------------EEc-C-
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI--VH--TPGVAADLSHIES---KAHVQ-------------AFN-G-   91 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi--~~--a~g~a~DL~~~~~---~~~v~-------------~~~-~-   91 (248)
                      |||+||||+|+||+++++.|+.+++++||+|+|+  ++  ++|+++||+|+.+   +.+++             +.. + 
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            6999999779999999999999999999999999  66  7899999999742   22222             211 0 


Q ss_pred             -----c---h-------------------------------------------------------------------hhc
Q psy14621         92 -----A---D-------------------------------------------------------------------QLK   96 (248)
Q Consensus        92 -----~---d-------------------------------------------------------------------~~l   96 (248)
                           .   |                                                                   +++
T Consensus        81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~~~~~~~p~~rviG~gt~Ld~~r~~~~la~~l  160 (303)
T 1o6z_A           81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEF  160 (303)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEECCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHcCCCHHHeeecccchhHHHHHHHHHHHh
Confidence                 0   0                                                                   888


Q ss_pred             CCCCCCeeEeEEeccCCCcccccccCcc----cCCCC-ChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHH
Q psy14621         97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAF  171 (248)
Q Consensus        97 ~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~-~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~  171 (248)
                      |++|++|+++||||| |+|++|+||+++    |  ++ +++.++++.++++++|++|++   +||+|+||+|.++++|++
T Consensus       161 ~v~~~~v~~~v~G~H-G~~~~p~~s~~~v~g~p--~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~~~~~~  234 (303)
T 1o6z_A          161 DAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTD--PEFSGDEKEQLLGDLQESAMDVIE---RKGATEWGPARGVAHMVE  234 (303)
T ss_dssp             TCCGGGEECCEEECS-STTEEECGGGCEETTBC--CCCCHHHHHHHHHHHHHHHHHHHT---TTSSCCHHHHHHHHHHHH
T ss_pred             CcCHHHeEEEEEeCC-CCccccCCcccccCCcC--ccCCHHHHHHHHHHHHHHhHHHHh---cCCChHHHHHHHHHHHHH
Confidence            999999999999999 999999999987    5  54 777899999999999999999   589999999999999999


Q ss_pred             HHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        172 SLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       172 aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      +|+.   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       235 ai~~---~~~~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  302 (303)
T 1o6z_A          235 AILH---DTGEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDKI  302 (303)
T ss_dssp             HHHT---TCCCEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHh---CCCCEEEEEEecCCccCCcceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence            9999   899999998 9999998 8999999999999999999999 699999999999999999998763

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=3.6e-42  Score=311.52  Aligned_cols=203  Identities=22%  Similarity=0.336  Sum_probs=183.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch---------
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD---------   93 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d---------   93 (248)
                      ||+|||| |+||+++|+.|+++++ +||+|+|+++  ++|+++||+|+.+    +.+++.+.+      +|         
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~~ag~~   78 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYEDMRGSDIVLVTAGIG   78 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHHHhCCCCEEEEeCCCC
Confidence            8999999 9999999999999999 9999999998  8999999999742    345655432      11         


Q ss_pred             ----------------------------------------------------------------------------hhcC
Q psy14621         94 ----------------------------------------------------------------------------QLKG   97 (248)
Q Consensus        94 ----------------------------------------------------------------------------~~l~   97 (248)
                                                                                                  +++|
T Consensus        79 ~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~~~~p~~rviG~gt~LD~~R~~~~la~~lg  158 (308)
T 2d4a_B           79 RKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLG  158 (308)
T ss_dssp             CCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCChhhEEEecccchHHHHHHHHHHHhC
Confidence                                                                                        8889


Q ss_pred             CCCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCC-chhHHHHHHHHHHHH
Q psy14621         98 LNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAG-SATLSMAYAGARFAF  171 (248)
Q Consensus        98 v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkg-st~~siA~a~~~iv~  171 (248)
                      ++|++|+++||||| |+||||+||+++    |+.+ ++++.++++.++++++|++|++   +|| +|+|++|.++++|++
T Consensus       159 v~~~~v~~~v~G~H-g~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~s~~~~~a~a~~~~~~  234 (308)
T 2d4a_B          159 VSFKSVNAIVLGMH-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITE---LRGYSSNYGPAAGLVLTVE  234 (308)
T ss_dssp             SCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHH---HHSSCCCHHHHHHHHHHHH
T ss_pred             cChhHeEEEEEecc-CCceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhh---CCCCccHHHHHHHHHHHHH
Confidence            99999999999999 899999999997    5444 5677899999999999999999   578 999999999999999


Q ss_pred             HHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621        172 SLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK  247 (248)
Q Consensus       172 aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~  247 (248)
                      +|+.   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++.+.+.|++
T Consensus       235 ai~~---~~~~v~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~~~~l~~  308 (308)
T 2d4a_B          235 AIKR---DSKRIYPYSLYLQGEYGYNDIVAEVPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLVETLPPQLRE  308 (308)
T ss_dssp             HHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTSCHHHHC
T ss_pred             HHHh---CCCcEEEEEEEEcCccCCCceEEEEEEEEcCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999   899999998 9999998 8999999999999999999999 699999999999999999999988777764

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=1.2e-41  Score=308.88  Aligned_cols=201  Identities=26%  Similarity=0.432  Sum_probs=178.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCCC--eEEEEcC-------ch-------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKA--HVQAFNG-------AD-------   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~~--~v~~~~~-------~d-------   93 (248)
                      +.+||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||.|+.+..  +++++.+       +|       
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~   83 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAG   83 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCC
Confidence            4579999999 999999999999999999999999998  889999999975311  2222221       11       


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        84 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~~~~s~~p~~rviG~gt~lD~~r~~~~la~~  163 (316)
T 1ldn_A           84 ANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEY  163 (316)
T ss_dssp             CCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHTCCGGGEEECTTHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHHHHHhCCCHHHEEecccchHHHHHHHHHHHH
Confidence                                                                                          88


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC-------ChHHHHHHHHHHhhccceeeeccCCCCchhHHHHH
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAY  164 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~-------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~  164 (248)
                      +|++|++|++|||||| |+|+||+||+++    |+.++       +++.++++.++++++|++|++   +||+|+|++|.
T Consensus       164 l~v~~~~v~~~v~G~H-G~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~  239 (316)
T 1ldn_A          164 FSVAPQNVHAYIIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE---KKGATYYGIAM  239 (316)
T ss_dssp             HTSCGGGEEEEEEBCS-STTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHHH
T ss_pred             hCCCHHHeEEEEeccc-CCceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHh---ccCCcHHHHHH
Confidence            8999999999999999 999999999987    55443       345578999999999999999   57899999999


Q ss_pred             HHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        165 AGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       165 a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      ++++++++|++   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++++
T Consensus       240 a~~~~~~ai~~---~~~~~~~~~~~~~g~yg~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  314 (316)
T 1ldn_A          240 GLARVTRAILH---NENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARA  314 (316)
T ss_dssp             HHHHHHHHHHT---TCCEEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHh---CCCcEEEEEEEecCccCCcceEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   899999998 9999998 8999999999999999999999 699999999999999999998865

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=8.2e-42  Score=310.14  Aligned_cols=202  Identities=25%  Similarity=0.425  Sum_probs=177.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC--CeEEEEcC-------ch-------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK--AHVQAFNG-------AD-------   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~--~~v~~~~~-------~d-------   93 (248)
                      +++||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+...  .+++++.+       +|       
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag   83 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAG   83 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCC
Confidence            4579999999 999999999999999999999999988  88999999997521  22222212       11       


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        84 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~gt~lD~~r~~~~la~~  163 (317)
T 3d0o_A           84 AAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEA  163 (317)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEecCccccHHHHHHHHHHH
Confidence                                                                                          88


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHH
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYA  165 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a  165 (248)
                      +|++|++|+++||||| |+|+||+||+++    |+.+      ++++.++++.++++++|++|++   +||+|+|++|.|
T Consensus       164 l~v~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a  239 (317)
T 3d0o_A          164 FDVAPRSVDAQIIGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ---AKGATYYGVAMG  239 (317)
T ss_dssp             HTSCGGGCBCCEEBCS-STTCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHH---HHSCCCHHHHHH
T ss_pred             hCcChhhEEEEEEecC-CCCeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEe---CCCCchHhHHHH
Confidence            8999999999999999 999999999987    3322      4556688999999999999999   578999999999


Q ss_pred             HHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        166 GARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       166 ~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                      +++++++|+.   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++++.
T Consensus       240 ~~~~~~ai~~---~~~~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~  314 (317)
T 3d0o_A          240 LARITEAIFR---NEDAVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKFAHSAKTLKDIMAEAE  314 (317)
T ss_dssp             HHHHHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHc---CCCcEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   899999998 9999998 7999999999999999999999 6999999999999999999988664

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=1.2e-40  Score=301.41  Aligned_cols=201  Identities=29%  Similarity=0.455  Sum_probs=179.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch--------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD--------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d--------   93 (248)
                      +||+|||| |+||+++|+.|+.+++++ ++|+|+++  ++|+++||+|+..    +.+++.+++      .|        
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aD~Vi~a~g~   80 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA   80 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHHHHCCCCEEEEcCCC
Confidence            69999999 999999999999999876 99999988  8899999999742    334444322      11        


Q ss_pred             -----------------------------------------------------------------------------hhc
Q psy14621         94 -----------------------------------------------------------------------------QLK   96 (248)
Q Consensus        94 -----------------------------------------------------------------------------~~l   96 (248)
                                                                                                   +++
T Consensus        81 p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~~~~~~~~~~rviG~gt~LD~~r~~~~la~~l  160 (309)
T 1ur5_A           81 PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEA  160 (309)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHHHHHcCCCHHHEEECCcchHHHHHHHHHHHHh
Confidence                                                                                         888


Q ss_pred             CCCCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHH
Q psy14621         97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAF  171 (248)
Q Consensus        97 ~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~  171 (248)
                      |++|++|++|||||| |+|+||+||+++    |+.+ ++++.++++.++++++|++|+++ .+||+|+|++|.++++|++
T Consensus       161 gv~~~~v~~~v~G~H-g~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~a~a~~~~~~  238 (309)
T 1ur5_A          161 GVSVEDVQAMLMGGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAPAAATAQMVE  238 (309)
T ss_dssp             TCCGGGEEECCEECS-GGGEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHHHHHHHHHHH
T ss_pred             CCChhheeEEEecCc-CCceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHHHHHHHHHHH
Confidence            999999999999999 899999999987    5555 57778999999999999999995 2478999999999999999


Q ss_pred             HHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        172 SLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       172 aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                      +|+.   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++++.
T Consensus       239 ai~~---~~~~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~  307 (309)
T 1ur5_A          239 AVLK---DKKRVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDTLK  307 (309)
T ss_dssp             HHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHc---CCCcEEEEEEEecCccCCcceEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999   899999998 9999998 8999999999999999999999 6999999999999999999998764

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=8.4e-41  Score=302.77  Aligned_cols=201  Identities=22%  Similarity=0.413  Sum_probs=174.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec--CC--chhhHhhhcCccC----CCeEEEEc--------Cch----
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI--VH--TPGVAADLSHIES----KAHVQAFN--------GAD----   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi--~~--a~g~a~DL~~~~~----~~~v~~~~--------~~d----   93 (248)
                      |||+||||+|+||+++++.|+.+++++|++|+|+  ++  ++|+++||+|+.+    +.++....        |.|    
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            6999999999999999999999999999999999  65  7899999999752    23444322        111    


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~vlv~SNPv~~~t~~~~k~~~~p~~rviG~gt~LD~~r~~~~la  160 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVITNPVDVMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIA  160 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECSSSHHHHHHHHHHHHCCCTTSEEECTTHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecCcHHHHHHHHHHhhCcChhcEEEeCccHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC---ChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF---PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAG  166 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~---~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~  166 (248)
                      +++|++|++|+++||||| |+|+||+||+++    |+.++   +++.++++.++++++|++|++   +||+|+|++|.++
T Consensus       161 ~~lgv~~~~v~~~v~G~H-g~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kgs~~~~~a~a~  236 (313)
T 1hye_A          161 KFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---LKGGSEFGPAAAI  236 (313)
T ss_dssp             HHHTCCGGGEECCEEECS-STTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CCHHHHH
T ss_pred             HHhCcCHHHeEEEEeecc-CCcccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeec---CCCCcHHHHHHHH
Confidence            788999999999999999 999999999987    55554   566689999999999999999   5889999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEee-EecCCC-C-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        167 ARFAFSLIQGLKGESNVIECA-YVKSDV-T-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       167 ~~iv~aIl~~l~~~~~il~~s-~~~g~y-g-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                      ++++++|+.   |+++++|++ +++|+| | +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++++.
T Consensus       237 ~~~~~ai~~---~~~~~~~~~~~~~g~~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~  311 (313)
T 1hye_A          237 LNVVRCIVN---NEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEEVK  311 (313)
T ss_dssp             HHHHHHHHT---TCCEEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHc---CCCeEEEEEEeecceecCccceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999   899999998 999999 7 8999999999999999999999 7999999999999999999998764

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=1.2e-39  Score=294.48  Aligned_cols=194  Identities=19%  Similarity=0.252  Sum_probs=166.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhcCccCCCeEEEEcC------ch------------
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLSHIESKAHVQAFNG------AD------------   93 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~~~~~~~~v~~~~~------~d------------   93 (248)
                      ++||+|||| |++|+++|+.|+.+++++||+|+|+++ ++|+++||.|...+ +++.+.+      +|            
T Consensus        14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~-~i~~t~d~~~l~~aD~Vi~aag~~~pG   91 (303)
T 2i6t_A           14 VNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLP-NVEISKDLSASAHSKVVIFTVNSLGSS   91 (303)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCT-TEEEESCGGGGTTCSEEEECCCC----
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCC-CeEEeCCHHHHCCCCEEEEcCCCCCCC
Confidence            479999998 999999999999999999999999998 89999999986543 4444322      11            


Q ss_pred             ------------------------------------------------------------------------hhcCCCCC
Q psy14621         94 ------------------------------------------------------------------------QLKGLNPT  101 (248)
Q Consensus        94 ------------------------------------------------------------------------~~l~v~p~  101 (248)
                                                                                              +++|++|+
T Consensus        92 ~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~gt~Ld~~R~~~~la~~lgv~~~  171 (303)
T 2i6t_A           92 QSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTS  171 (303)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHHHTSCCTTG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCCCCCchHHHHHHHHHHHcCCChH
Confidence                                                                                    88899999


Q ss_pred             CeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhcccCCCC
Q psy14621        102 DVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGES  181 (248)
Q Consensus       102 ~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~~l~~~~  181 (248)
                      +|+++||||| |+|++|+||+..+   +   ..+++.++++++|++|++   +||+|+||+|.++++|+++|++   |++
T Consensus       172 ~v~~~v~G~H-g~s~~p~~s~~~~---~---~~~~~~~~~~~~g~eii~---~kGst~~~~a~a~~~i~~ai~~---~~~  238 (303)
T 2i6t_A          172 GKEVWVIGEQ-GEDKVLTWSGQEE---V---VSHTSQVQLSNRAMELLR---VKGQRSWSVGLSVADMVDSIVN---NKK  238 (303)
T ss_dssp             GGGEEEEBSC-SSSCEEEEBCSSC---C---CCHHHHHHHHHHHHTTSS---SCCCCHHHHHHHHHHHHHHHHT---TCC
T ss_pred             HeEEEEecCC-CCCcccccccccc---c---cHHHHHHHHHHHHHHHHH---ccCchHHhHHHHHHHHHHHHHc---CCC
Confidence            9999999999 8999999999632   2   125688889999999999   6899999999999999999999   899


Q ss_pred             eEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        182 NVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       182 ~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      +++|++ +++|+||  +++|||+||++|++|+++++++++|+++|+++|++|++.|++.+++.
T Consensus       239 ~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~~~~~~  301 (303)
T 2i6t_A          239 KVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQQQL  301 (303)
T ss_dssp             EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             cEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            999998 9999998  59999999999999999998874589999999999999999988754

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=1.3e-39  Score=293.88  Aligned_cols=196  Identities=20%  Similarity=0.244  Sum_probs=159.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC---CCeEEEEc-----Cch----------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES---KAHVQAFN-----GAD----------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~---~~~v~~~~-----~~d----------   93 (248)
                      |||+|||| |++|+++|+.|+.+++++|++|+|+++  ++|.++|+.|+.+   +.++....     +.|          
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC----
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            59999999 999999999999999999999999998  7899999998762   22333210     111          


Q ss_pred             -------------------------------------------------------------------------hhcCCCC
Q psy14621         94 -------------------------------------------------------------------------QLKGLNP  100 (248)
Q Consensus        94 -------------------------------------------------------------------------~~l~v~p  100 (248)
                                                                                               +++|++|
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~gt~Ld~~r~~~~la~~l~v~~  159 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGSGTVLDSARFRHLMAQHAGVDG  159 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEECTTHHHHHHHHHHHHHHHTSCG
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeCCcCchHHHHHHHHHHHhCcCH
Confidence                                                                                     8889999


Q ss_pred             CCeeEeEEeccCCCcccccccCcc----cCCC--------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHH
Q psy14621        101 TDVNVPVIGGHAGITIIPLISQAT----PSVS--------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR  168 (248)
Q Consensus       101 ~~V~~~ViGeHsGds~vp~wS~a~----p~~~--------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~  168 (248)
                      ++|++|||||| |+|+||+||+++    |+.+        ++++.++++.++++++|++|++   +||+|+|++|.++++
T Consensus       160 ~~v~~~v~G~H-g~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~---~kg~t~~~~a~a~~~  235 (304)
T 2v6b_A          160 THAHGYVLGEH-GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKRATYYGIGAALAR  235 (304)
T ss_dssp             GGEECCEEESS-STTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CCHHHHHHHHH
T ss_pred             HHceEEEecCC-CCceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---ccCCcHHHHHHHHHH
Confidence            99999999999 999999999997    4322        3666789999999999999999   589999999999999


Q ss_pred             HHHHHhcccCCCCeEEEee-EecCCCCCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        169 FAFSLIQGLKGESNVIECA-YVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       169 iv~aIl~~l~~~~~il~~s-~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      ++++|++   |+++++|++ |++| ||  +|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++.
T Consensus       236 ~~~ai~~---~~~~~~~~~~~~~g-yg--~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~  302 (304)
T 2v6b_A          236 ITEAVLR---DRRAVLTVSAPTPE-YG--VSLSLPRVVGRQGVLSTLHP-KLTGDEQQKLEQSAGVLRGFKQQL  302 (304)
T ss_dssp             HHHHHHT---TCCEEEEEEEEETT-TT--EEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHh---CCCcEEEEEEEECC-cC--cEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999   899999998 9999 96  99999999999999999999 699999999999999999988764

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=6.2e-39  Score=290.02  Aligned_cols=203  Identities=27%  Similarity=0.462  Sum_probs=177.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCcc----CCCeEEEEcC------ch--------
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIE----SKAHVQAFNG------AD--------   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~----~~~~v~~~~~------~d--------   93 (248)
                      |||+|||| |.+|+++|+.|+.+++..+++|+|+++  ++|.++|+.|..    .+.++..+++      .|        
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHHHCCCCEEEEeCCC
Confidence            69999999 999999999999987788999999998  788899998863    1234443322      11        


Q ss_pred             -----------------------------------------------------------------------------hhc
Q psy14621         94 -----------------------------------------------------------------------------QLK   96 (248)
Q Consensus        94 -----------------------------------------------------------------------------~~l   96 (248)
                                                                                                   +++
T Consensus        80 p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~~~~~~~~~~rviG~gt~ld~~r~~~~la~~l  159 (310)
T 1guz_A           80 PRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMEL  159 (310)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHHHHHHCSCGGGEEEECHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHHHHhcCCChHHEEECCCchHHHHHHHHHHHHh
Confidence                                                                                         788


Q ss_pred             CCCCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHH
Q psy14621         97 GLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAF  171 (248)
Q Consensus        97 ~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~  171 (248)
                      |++|++|+++||||| |+|+||+||+++    |+.+ ++++.++++.++++++|++|+++ .+||+|+|++|.++++|++
T Consensus       160 ~v~~~~v~~~v~G~H-g~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a~a~~~~~~  237 (310)
T 1guz_A          160 GVSMQDINACVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVE  237 (310)
T ss_dssp             TCCGGGEECCEEECS-GGGEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHHHHHHHHHH
T ss_pred             CCCHHHeEEEEEccc-CCcEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHHHHHHHHHH
Confidence            999999999999999 899999999987    4444 56778999999999999999995 2478999999999999999


Q ss_pred             HHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy14621        172 SLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE  243 (248)
Q Consensus       172 aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~  243 (248)
                      +|+.   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++++.+
T Consensus       238 ai~~---~~~~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~~  307 (310)
T 1guz_A          238 SIVL---DRKRVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKMLES  307 (310)
T ss_dssp             HHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHc---CCCcEEEEEEeecCccCCcceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999   899999998 9999998 8999999999999999999999 69999999999999999999887543

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=8.4e-39  Score=291.07  Aligned_cols=201  Identities=31%  Similarity=0.431  Sum_probs=175.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCcc----CCCeEEEEcC--------------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIE----SKAHVQAFNG--------------   91 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~----~~~~v~~~~~--------------   91 (248)
                      .++||+|||| |.+|+++|+.|+.+++++ ++|+|+++  ++|.++||+|+.    .+.+++.+++              
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~Vi~a~   80 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTA   80 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEeC
Confidence            3579999999 999999999999999976 99999998  889999999962    1223332111              


Q ss_pred             ---------------ch---------------------------------------------------------------
Q psy14621         92 ---------------AD---------------------------------------------------------------   93 (248)
Q Consensus        92 ---------------~d---------------------------------------------------------------   93 (248)
                                     .|                                                               
T Consensus        81 g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~~~~~g~~~~rviG~gt~ld~~R~~  160 (322)
T 1t2d_A           81 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLLHQHSGVPKNKIIGLGGVLDTSRLK  160 (322)
T ss_dssp             SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHHHHhcCCChHHEEeccCcccHHHHH
Confidence                           01                                                               


Q ss_pred             ----hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchh
Q psy14621         94 ----QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSAT  159 (248)
Q Consensus        94 ----~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~  159 (248)
                          +++|++|++|+++||||| |+|++|+||+++    |+.+      ++++.++++.++++++|++|++.   ||+|+
T Consensus       161 ~~la~~lgv~~~~v~~~v~G~H-G~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~---kgs~~  236 (322)
T 1t2d_A          161 YYISQKLNVCPRDVNAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL---HASPY  236 (322)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH---TSSCC
T ss_pred             HHHHHHhCCCHHHeEEEEEcCC-CCcEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc---cCchH
Confidence                888999999999999999 899999999986    3322      46677899999999999999995   78999


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy14621        160 LSMAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKN  237 (248)
Q Consensus       160 ~siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~  237 (248)
                      ||+|.++++|+++|+.   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.
T Consensus       237 ~~~a~a~~~~~~ai~~---~~~~v~~~s~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~L~~~  312 (322)
T 1t2d_A          237 VAPAAAIIEMAESYLK---DLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETKRM  312 (322)
T ss_dssp             HHHHHHHHHHHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh---CCCCEEEEEEEecCccCCCceEEEEEEEEeCCeeEEeCCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999   899999998 9999998 8999999999999999999999 69999999999999999999


Q ss_pred             HHHHh
Q psy14621        238 IAKGE  242 (248)
Q Consensus       238 i~~~l  242 (248)
                      ++.+-
T Consensus       313 ~~~~~  317 (322)
T 1t2d_A          313 KALAH  317 (322)
T ss_dssp             HHHC-
T ss_pred             HHHhh
Confidence            87653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=1e-38  Score=291.08  Aligned_cols=202  Identities=31%  Similarity=0.502  Sum_probs=178.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch-------
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD-------   93 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d-------   93 (248)
                      ++||+|||| |.+|+++|+.|+.+++++ ++|+|+++  ++|.++|++|...    +.+++.+++      +|       
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~~al~~aD~VI~avg   91 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNYEYLQNSDVVIITAG   91 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCHHHHCCCCEEEEcCC
Confidence            469999999 999999999999999875 99999998  7898999998642    334544322      11       


Q ss_pred             ------------------------------------------------------------------------------hh
Q psy14621         94 ------------------------------------------------------------------------------QL   95 (248)
Q Consensus        94 ------------------------------------------------------------------------------~~   95 (248)
                                                                                                    ++
T Consensus        92 ~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~rviG~~t~Ld~~R~~~~la~~  171 (328)
T 2hjr_A           92 VPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRA  171 (328)
T ss_dssp             CCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHhcCCChhhEEEeCcHHHHHHHHHHHHHH
Confidence                                                                                          88


Q ss_pred             cCCCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHH
Q psy14621         96 KGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYA  165 (248)
Q Consensus        96 l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a  165 (248)
                      +|++|++|+++||||| |+|+||+||+++    |+.+      +++++++++.++++++|++|++++ +||+|+||+|.+
T Consensus       172 lgv~~~~v~~~v~G~H-g~t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs~~~~~a~a  249 (328)
T 2hjr_A          172 LGVKPSDVSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSAFYAPAAS  249 (328)
T ss_dssp             HTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCCCCHHHHHH
T ss_pred             hCCCHHHeeEEEecCC-CCceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCchHHHHHHH
Confidence            8999999999999999 899999999986    4322      466778899999999999999964 689999999999


Q ss_pred             HHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        166 GARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       166 ~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                      +++|+++|+.   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++++.
T Consensus       250 ~~~i~~ai~~---~~~~v~~~~v~~~G~~g~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~~  324 (328)
T 2hjr_A          250 AVAMAQAYLK---DSKSVLVCSTYLTGQYNVNNLFVGVPVVIGKNGIEDVVIV-NLSDDEKSLFSKSVESIQNLVQDLK  324 (328)
T ss_dssp             HHHHHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc---CCCcEEEEEEeecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999   899999998 9999998 8999999999999999999999 6999999999999999999998875

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=7.3e-38  Score=285.79  Aligned_cols=204  Identities=30%  Similarity=0.481  Sum_probs=177.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCcc----CCCeEEEEcC-------------
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIE----SKAHVQAFNG-------------   91 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~----~~~~v~~~~~-------------   91 (248)
                      ++++||+|||| |.+|+++|+.|+..++++ ++|+|+++  +++.++|++|..    .+.+++.+++             
T Consensus         7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~   84 (331)
T 1pzg_A            7 QRRKKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV   84 (331)
T ss_dssp             SCCCEEEEECC-SHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEE
Confidence            34579999999 999999999999999865 99999998  788889998863    1234433221             


Q ss_pred             ---------c--------h-------------------------------------------------------------
Q psy14621         92 ---------A--------D-------------------------------------------------------------   93 (248)
Q Consensus        92 ---------~--------d-------------------------------------------------------------   93 (248)
                               .        |                                                             
T Consensus        85 a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~~~~~~~~~~rviG~gt~LD~~R  164 (331)
T 1pzg_A           85 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMACMLDSGR  164 (331)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECCHHHHHHH
T ss_pred             ccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHHHHhcCCChhcEEeccchHHHHH
Confidence                     0        0                                                             


Q ss_pred             ------hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC------CChHHHHHHHHHHhhccceeeeccCCCCc
Q psy14621         94 ------QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS------FPDDQLKALTGRIQEAGTEVVKAKAGAGS  157 (248)
Q Consensus        94 ------~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~------~~~~~~~~i~~~v~~~g~eIi~~k~gkgs  157 (248)
                            +++|++|++|+++||||| |+|+||+||+++    |+.+      ++++.++++.++++++|++|+++. +||+
T Consensus       165 ~~~~la~~lgv~~~~v~~~v~G~H-g~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~~-~kgs  242 (331)
T 1pzg_A          165 FRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQGS  242 (331)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSC
T ss_pred             HHHHHHHHhCCCHHHceEEEecCC-CCCEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHhh-cCCC
Confidence                  788999999999999999 899999999986    4322      466778899999999999999952 4789


Q ss_pred             hhHHHHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q psy14621        158 ATLSMAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELK  235 (248)
Q Consensus       158 t~~siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~  235 (248)
                      |+||+|.++++|+++|++   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       243 t~~~~a~a~~~ii~ai~~---~~~~~~~~~v~~~G~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~  318 (331)
T 1pzg_A          243 AYYAPAASAVAMATSFLN---DEKRVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKSVDDVM  318 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHh---CCCcEEEEEEEecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHH
Confidence            999999999999999999   899999998 9999998 8999999999999999999999 699999999999999999


Q ss_pred             HHHHHHh
Q psy14621        236 KNIAKGE  242 (248)
Q Consensus       236 ~~i~~~l  242 (248)
                      +.++++.
T Consensus       319 ~~~~~~~  325 (331)
T 1pzg_A          319 ALNKAVA  325 (331)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998763

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.3e-37  Score=283.57  Aligned_cols=205  Identities=20%  Similarity=0.279  Sum_probs=172.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecC----C--chhhHhhhcCccCC--CeEEEEcC-------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIV----H--TPGVAADLSHIESK--AHVQAFNG-------   91 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~----~--a~g~a~DL~~~~~~--~~v~~~~~-------   91 (248)
                      +++||+||||+|+||+++++.|+.+++++     ||+|+|++    +  ++|+++||+|+..+  .++..+++       
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~   83 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD   83 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC
Confidence            56899999988999999999999999874     99999998    5  78999999997432  24443332       


Q ss_pred             ch------------------------------------------------------------------------------
Q psy14621         92 AD------------------------------------------------------------------------------   93 (248)
Q Consensus        92 ~d------------------------------------------------------------------------------   93 (248)
                      .|                                                                              
T Consensus        84 aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~~~~~~~p~~~v~g~t~Ld~  163 (329)
T 1b8p_A           84 ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAMKSAPSLPAKNFTAMLRLDH  163 (329)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHH
T ss_pred             CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHHHHcCCCCHHHEEEeecHHH
Confidence            11                                                                              


Q ss_pred             --------hhcCCCCCCeeE-eEEeccCCCcccccccCcc----cCCC-CChHH--HHHHHHHHhhccceeeeccCCCCc
Q psy14621         94 --------QLKGLNPTDVNV-PVIGGHAGITIIPLISQAT----PSVS-FPDDQ--LKALTGRIQEAGTEVVKAKAGAGS  157 (248)
Q Consensus        94 --------~~l~v~p~~V~~-~ViGeHsGds~vp~wS~a~----p~~~-~~~~~--~~~i~~~v~~~g~eIi~~k~gkgs  157 (248)
                              +++|++|++|++ +||||| |+|+||+||+++    |+.+ +++++  .+++.++++++|++|++.|   |.
T Consensus       164 ~r~~~~la~~lgv~~~~v~~~~v~G~H-g~s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k---g~  239 (329)
T 1b8p_A          164 NRALSQIAAKTGKPVSSIEKLFVWGNH-SPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR---GV  239 (329)
T ss_dssp             HHHHHHHHHHHTCCGGGEESCEEEBCS-STTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH---SS
T ss_pred             HHHHHHHHHHhCcCHHHceEEEEEecc-CCcEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhcc---CC
Confidence                    778999999995 689999 899999999997    4323 22222  5789999999999999965   44


Q ss_pred             hhHH-HHHHHHHHHHHHhcccCC-CCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHH
Q psy14621        158 ATLS-MAYAGARFAFSLIQGLKG-ESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAV  231 (248)
Q Consensus       158 t~~s-iA~a~~~iv~aIl~~l~~-~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa  231 (248)
                      ++|+ .|.++++++++|+.   | +++++|++ +++|+||  +++|||+||++ ++|++++++ + +|+++|+++|++|+
T Consensus       240 ~~~~~~a~a~~~~~~ai~~---~~~~~~~~~s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~~~-~l~~~e~~~l~~s~  314 (329)
T 1b8p_A          240 SSAASAANAAIDHIHDWVL---GTAGKWTTMGIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQGL-SIDAFSQERINVTL  314 (329)
T ss_dssp             CCHHHHHHHHHHHHHHHHH---CCTTCCEEEEEECCSGGGCCTTCEEEEEEEE-ETTEEEECCCC-CCCHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhc---CCCCcEEEEEEEecCccCCCCCeEEEEEEEE-cCCEEEecCCC-CCCHHHHHHHHHHH
Confidence            4444 66789999999999   6 88999998 9999998  79999999999 999999998 9 69999999999999


Q ss_pred             HHHHHHHHHHhhhh
Q psy14621        232 PELKKNIAKGEEFV  245 (248)
Q Consensus       232 ~~I~~~i~~~l~~~  245 (248)
                      +.|++.++.+++++
T Consensus       315 ~~l~~~~~~~~~~~  328 (329)
T 1b8p_A          315 NELLEEQNGVQHLL  328 (329)
T ss_dssp             HHHHHHHHHHGGGG
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998775

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.3e-36  Score=274.20  Aligned_cols=200  Identities=28%  Similarity=0.402  Sum_probs=173.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----------------CCeEEEEc-Cc--
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----------------KAHVQAFN-GA--   92 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----------------~~~v~~~~-~~--   92 (248)
                      |||+|||+ |++|+++|+.|+..+.+++++|+|+++  +++.++|+.|+..                .+++.+.+ +.  
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCHHHhCCCCEEEEccCCCC
Confidence            69999999 999999999999999888999999987  7787887765321                12222211 00  


Q ss_pred             -------h-------------------------------------------------------------------hhcCC
Q psy14621         93 -------D-------------------------------------------------------------------QLKGL   98 (248)
Q Consensus        93 -------d-------------------------------------------------------------------~~l~v   98 (248)
                             |                                                                   +++|+
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~~t~ld~~r~~~~la~~lgv  159 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGF  159 (319)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEECTTHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEeeCccHHHHHHHHHHHHHhCc
Confidence                   0                                                                   77899


Q ss_pred             CCCCeeEeEEeccCCCcccccccCcc----cCCC-------CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHH
Q psy14621         99 NPTDVNVPVIGGHAGITIIPLISQAT----PSVS-------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGA  167 (248)
Q Consensus        99 ~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~  167 (248)
                      +|++|+++|+||| |+++||+||+++    |+.+       ++++.++++.+++++++++|++   +||+|+|++|.+++
T Consensus       160 ~~~~v~~~v~G~h-g~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~~  235 (319)
T 1a5z_A          160 SPRSVHVYVIGEH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE---RKGATHYAIALAVA  235 (319)
T ss_dssp             CGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHHHHHH
T ss_pred             CHHHceEEEEeCC-CCCcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhc---cCCchHHHHHHHHH
Confidence            9999999999999 999999999986    3322       4666789999999999999999   57899999999999


Q ss_pred             HHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        168 RFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       168 ~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                      +|+++|+.   |+++++|++ +++|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.++.+.
T Consensus       236 ~~~~ai~~---~~~~~~~~~~~~~g~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~~~~~  308 (319)
T 1a5z_A          236 DIVESIFF---DEKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAINEIT  308 (319)
T ss_dssp             HHHHHHHT---TCCEEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh---CCCCEEEEEEEecCccCccceEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999   899999998 9999998 8999999999999999999999 6999999999999999999998874

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=1.5e-34  Score=261.56  Aligned_cols=203  Identities=27%  Similarity=0.468  Sum_probs=174.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC----CCeEEEEcC------ch------
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNG------AD------   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~------~d------   93 (248)
                      +++||+|||| |.+|+++|+.|+..++. +++|+|+++  +++.++|+.|...    +.++..+++      +|      
T Consensus         3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~a~~~aDiVi~av   80 (317)
T 2ewd_A            3 ERRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDYADISGSDVVIITA   80 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCHHHhCCCCEEEEeC
Confidence            3579999999 99999999999999875 599999988  6777888876521    223332211      00      


Q ss_pred             -------------------------------------------------------------------------------h
Q psy14621         94 -------------------------------------------------------------------------------Q   94 (248)
Q Consensus        94 -------------------------------------------------------------------------------~   94 (248)
                                                                                                     +
T Consensus        81 g~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~~t~ld~~r~~~~la~  160 (317)
T 2ewd_A           81 SIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQ  160 (317)
T ss_dssp             CCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHCCCGGGEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhhCCCHHHEEeccCcHHHHHHHHHHHH
Confidence                                                                                           7


Q ss_pred             hcCCCCCCeeEeEEeccCCCcccccccCcc----cCC----C--CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHH
Q psy14621         95 LKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSV----S--FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAY  164 (248)
Q Consensus        95 ~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~----~--~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~  164 (248)
                      ++|++|++|++||+|+| |++++|.||.++    |+.    +  +++++++++.++++.++++++++. |+|+++|++|.
T Consensus       161 ~lg~~~~~v~~~v~g~H-g~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g~~~~~~a~  238 (317)
T 2ewd_A          161 HFGVNASDVSANVIGGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTAYFAPAA  238 (317)
T ss_dssp             HHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSCCCHHHHH
T ss_pred             HhCcChhhceEEEEecC-CCceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCCchHHHHHH
Confidence            88999999999999999 899999999984    221    1  567788999999999999999975 78999999999


Q ss_pred             HHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        165 AGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       165 a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                      ++++++++|+.   |+++++|++ +.+|+|| +++|||+||++|++|+++++++ +|+++|+++|++|++.|++.+++..
T Consensus       239 a~~~~~~ai~~---~~~~~~~~~~~~~G~~g~~~~~~~~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~  314 (317)
T 2ewd_A          239 AAVKMAEAYLK---DKKAVVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILEL-DLTPLEQKLLGESINEVNTISKVLD  314 (317)
T ss_dssp             HHHHHHHHHHT---TCCEEEEEEEEESSSTTCSSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc---CCCeEEEEEEEecCccCCcceEEEeEEEEcCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999998   899999998 9999999 8999999999999999999999 6999999999999999999998764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=7.4e-34  Score=256.01  Aligned_cols=198  Identities=19%  Similarity=0.252  Sum_probs=167.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC-----------------CCeEEEEc----
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES-----------------KAHVQAFN----   90 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~-----------------~~~v~~~~----   90 (248)
                      +||+|||+ |++|+++|+.|+..++..+++|+|+++  +++.++|+.|+..                 .+++.+.+    
T Consensus         2 ~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCHHHhCCCCEEEEecCCc
Confidence            69999998 999999999999998778999999987  6777777754310                 11222110    


Q ss_pred             Cc---------------------h--------------------------------------------------------
Q psy14621         91 GA---------------------D--------------------------------------------------------   93 (248)
Q Consensus        91 ~~---------------------d--------------------------------------------------------   93 (248)
                      ..                     +                                                        
T Consensus        81 ~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rvig~gt~ld~~r~~~~~a  160 (309)
T 1hyh_A           81 KLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALFQHVTGFPAHKVIGTGTLLDTARMQRAVG  160 (309)
T ss_dssp             GGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEECTTHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHHHHHhcCCCHHHEeecCccchHHHHHHHHH
Confidence            00                     0                                                        


Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC---CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS---FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAG  166 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~---~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~  166 (248)
                      +.++++|++|+++++||| |++++|.||+++    |+.+   ++++.++++.++++++|++|++.   ||+++|++|.++
T Consensus       161 ~~l~~~~~~v~~~v~G~h-g~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~~~~~~a~a~  236 (309)
T 1hyh_A          161 EAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG---KGYTSYGVATSA  236 (309)
T ss_dssp             HHHTCCGGGCBCCEEBCT-TTTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH---HSSCCHHHHHHH
T ss_pred             HHhCCChhheEEEEEeCC-CCcEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhc---cCCchHHHHHHH
Confidence            777899999999999999 999999999986    5544   35666899999999999999994   789999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEee-EecCCCCCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy14621        167 ARFAFSLIQGLKGESNVIECA-YVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE  243 (248)
Q Consensus       167 ~~iv~aIl~~l~~~~~il~~s-~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~  243 (248)
                      ++|+++|+.   |+++++|++ +++|   +++|+|+||++|++|+++++++ +|+++|+++|++|++.|++.++.+.+
T Consensus       237 ~~~~~ai~~---~~~~~~~~~~~~~g---~~~~~~vP~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~~~~~  307 (309)
T 1hyh_A          237 IRIAKAVMA---DAHAELVVSNRRDD---MGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIVD  307 (309)
T ss_dssp             HHHHHHHHT---TCCEEEEEEEECTT---TCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHc---CCCcEEEEEEEECC---CCeEEEEEEEEeCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999   899999998 8887   6999999999999999999999 69999999999999999999998765

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=3.8e-33  Score=253.01  Aligned_cols=204  Identities=23%  Similarity=0.364  Sum_probs=169.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCc-----ceEEEEecCC----chhhHhhhcCccCC--CeEEEEcC-------ch
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLV-----DHLSLYDIVH----TPGVAADLSHIESK--AHVQAFNG-------AD   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~-----~elvLiDi~~----a~g~a~DL~~~~~~--~~v~~~~~-------~d   93 (248)
                      ++|||.|+||+|+||+++++.|+.++.+     .|++|+|+++    ++|.++||+|+..+  .++....+       .|
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D   82 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD   82 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCC
Confidence            4579999999999999999999999876     4999999974    57889999886321  12222111       01


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus        83 ~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~tkl~~er  162 (327)
T 1y7t_A           83 YALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHNR  162 (327)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHHH
T ss_pred             EEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheeccchHHHHH
Confidence                                                                                            


Q ss_pred             ------hhcCCCCCCee-EeEEeccCCCcccccccCcc----cCCCC-ChHH-HHHHHHHHhhccceeeeccCCCCch-h
Q psy14621         94 ------QLKGLNPTDVN-VPVIGGHAGITIIPLISQAT----PSVSF-PDDQ-LKALTGRIQEAGTEVVKAKAGAGSA-T  159 (248)
Q Consensus        94 ------~~l~v~p~~V~-~~ViGeHsGds~vp~wS~a~----p~~~~-~~~~-~~~i~~~v~~~g~eIi~~k~gkgst-~  159 (248)
                            +++|+++..++ .+|+|+| +++++|.|+++.    |+.++ +++. ++++.++++++|++|++.|   |.+ +
T Consensus       163 ~~~~~a~~~g~~~~~vr~~~V~G~h-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~~~~  238 (327)
T 1y7t_A          163 AKAQLAKKTGTGVDRIRRMTVWGNH-SSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR---GASSA  238 (327)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEEBCS-STTCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH---SSCCH
T ss_pred             HHHHHHHHhCcChhheeeeEEEcCC-CCeEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc---CCCch
Confidence                  66799999998 5799999 899999999986    55444 4333 5899999999999999975   444 4


Q ss_pred             HHHHHHHHHHHHHHhcccCC--CCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHH
Q psy14621        160 LSMAYAGARFAFSLIQGLKG--ESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLG-LGKLSDFEKELVKAAVPE  233 (248)
Q Consensus       160 ~siA~a~~~iv~aIl~~l~~--~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~-l~~Ls~~E~~~L~~Sa~~  233 (248)
                      +++|.|+++++++|+.   |  +++++|++ +++|+||  +++|||+||++ ++|++++++ + +|+++|+++|++|++.
T Consensus       239 ~~~a~a~~~~~~~i~~---~~~~~~~~~~~~~~~g~yg~~~~~~~~~P~~i-~~G~~~i~~~~-~l~~~e~~~l~~s~~~  313 (327)
T 1y7t_A          239 ASAANAAIEHIRDWAL---GTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTA-KDGAYRVVEGL-EINEFARKRMEITAQE  313 (327)
T ss_dssp             HHHHHHHHHHHHHHHT---BCCTTCCEEEEEECSSGGGCCTTSEEEEEEEE-ETTEEEECCCC-CCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc---CCCCCeEEEEEEEecCccCCCCCeEEEEEEEE-cCCeEEecCCC-CCCHHHHHHHHHHHHH
Confidence            5678899999999999   7  68899998 9999998  79999999999 999999988 8 7999999999999999


Q ss_pred             HHHHHHHHhhh
Q psy14621        234 LKKNIAKGEEF  244 (248)
Q Consensus       234 I~~~i~~~l~~  244 (248)
                      |++.++.+.++
T Consensus       314 l~~~~~~~~~~  324 (327)
T 1y7t_A          314 LLDEMEQVKAL  324 (327)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999988653

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=99.96  E-value=1.9e-29  Score=226.82  Aligned_cols=202  Identities=21%  Similarity=0.369  Sum_probs=169.6

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC---CCeEEEE--------------cC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES---KAHVQAF--------------NG   91 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~---~~~v~~~--------------~~   91 (248)
                      +++|||+|||| |.+|+++|+.|+..+.+++++|+|+++  ++|.++|++|...   +.++...              +-
T Consensus         5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v   83 (319)
T 1lld_A            5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITA   83 (319)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECC
Confidence            34589999999 999999999999999888999999987  6778888766431   1222211              10


Q ss_pred             -----c----------------h--------------------------------------------------------h
Q psy14621         92 -----A----------------D--------------------------------------------------------Q   94 (248)
Q Consensus        92 -----~----------------d--------------------------------------------------------~   94 (248)
                           .                +                                                        +
T Consensus        84 ~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~~~~~~~~~~~vig~~~~l~~~r~~~~~a~  163 (319)
T 1lld_A           84 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQ  163 (319)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHTCCTTSEEECTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHHHHhcCCCHHHEeeccccHhHHHHHHHHHH
Confidence                 0                0                                                        4


Q ss_pred             hcCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC---------ChHHHHHHHHHHhhccceeeeccCCCCchhHH
Q psy14621         95 LKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF---------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLS  161 (248)
Q Consensus        95 ~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~---------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~s  161 (248)
                      ++++++.+++++++|+| |++++|+||.+.    |+.++         +++.++++.+++++.+++|+++   +|++.|+
T Consensus       164 ~~~v~~~~v~~~~~G~~-g~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~---~G~~~~~  239 (319)
T 1lld_A          164 QTGVNVKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIING---KGATNYA  239 (319)
T ss_dssp             HHTCCGGGEECCEEBSS-STTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTS---CCSCCHH
T ss_pred             HhCCCHHHeEEEEEeCC-CCceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhC---CCCchHH
Confidence            57899999999999999 999999999985    44322         2334788999999999999994   6889999


Q ss_pred             HHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14621        162 MAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA  239 (248)
Q Consensus       162 iA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~  239 (248)
                      ++.+.+.|+++|+.   |++.++|++ +++|.|+ .+.++|+||.++++|+++++++ +|+++|+++|++|++.|++.++
T Consensus       240 ~a~~~~sm~~di~~---~~~~ei~~s~~~~G~~~~~~~~~gvp~~~~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~~  315 (319)
T 1lld_A          240 IGMSGVDIIEAVLH---DTNRILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAA  315 (319)
T ss_dssp             HHHHHHHHHHHHHT---TCCEEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc---CCCcEEEEEEEecCcCCccceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998   889999998 9999998 7999999999999999999999 7999999999999999999887


Q ss_pred             HH
Q psy14621        240 KG  241 (248)
Q Consensus       240 ~~  241 (248)
                      +.
T Consensus       316 ~~  317 (319)
T 1lld_A          316 QF  317 (319)
T ss_dssp             TT
T ss_pred             Hh
Confidence            53

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=99.93  E-value=5.6e-26  Score=213.23  Aligned_cols=141  Identities=13%  Similarity=0.081  Sum_probs=118.7

Q ss_pred             hhcCCCCCCeeEeEEe-----------ccCCCcccccccCc---c-------cCC-CC-----------------ChHHH
Q psy14621         94 QLKGLNPTDVNVPVIG-----------GHAGITIIPLISQA---T-------PSV-SF-----------------PDDQL  134 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViG-----------eHsGds~vp~wS~a---~-------p~~-~~-----------------~~~~~  134 (248)
                      +.+|++|++|+++|+|           +| |++++|.||..   +       |+. ++                 +++..
T Consensus       176 ~~lgv~~~~v~~~v~GlNH~~w~~~~~~h-G~d~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~y~~~y~~~~~~~  254 (417)
T 1up7_A          176 EMFSARLEDVFLKYYGLNHLSFIEKVFVK-GEDVTEKVFENLKLKLSNIPDEDFPTWFYDSVRLIVNPYLRYYLMEKKMF  254 (417)
T ss_dssp             HHTTCCGGGEEEEEEEETTEEEEEEEEET-TEECHHHHHHHHTTC---CCTTSCCHHHHHHHCSEECGGGHHHHTHHHHH
T ss_pred             HHhCCCHHHCeEEEEeecceeeEEEeecC-CcEehhhHHHHHHHhhCCCcCCchHHHHHHhcCCCccchhhhccCCHHHH
Confidence            8889999999999999           99 99999999985   1       331 00                 22333


Q ss_pred             HHH---------HHHHhhccceee--------eccCCCCchhHHHHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC--
Q psy14621        135 KAL---------TGRIQEAGTEVV--------KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT--  194 (248)
Q Consensus       135 ~~i---------~~~v~~~g~eIi--------~~k~gkgst~~siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--  194 (248)
                      +++         .+++++++++++        ++. +||+|.|  +.++++|++||++   |+++++|++ +.+|.|+  
T Consensus       255 ~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~-~kg~t~~--~~~a~~ii~AI~~---d~~~~~~vsv~n~G~i~~l  328 (417)
T 1up7_A          255 KKISTHELRAREVMKIEKELFEKYRTAVEIPEELT-KRGGSMY--STAAAHLIRDLET---DEGKIHIVNTRNNGSIENL  328 (417)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGG-GSTTTTH--HHHHHHHHHHHHS---SSCEEEEEEEECTTSSTTS
T ss_pred             HhccccchHHHHHHHHHHHHHHHHHhhcccchhhh-hcCCcHH--HHHHHHHHHHHHc---CCCeEEEEEEecCCccCCC
Confidence            444         588888899998        321 4677755  8999999999999   999999998 8899884  


Q ss_pred             -CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        195 -EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       195 -~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                       .++|+++||++|++|++.+... +|+++|+++|+.++...+..++.++
T Consensus       329 p~d~~vevP~~vg~~Gi~~i~~~-~L~~~e~~~l~~~~~~e~l~veA~~  376 (417)
T 1up7_A          329 PDDYVLEIPCYVRSGRVHTLSQG-KGDHFALSFIHAVKMYERLTIEAYL  376 (417)
T ss_dssp             CTTCEEEEEEEEETTEEEEBCCC-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEeEEEeCCceEEeecC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             7999999999999999999998 6999999999999999998888774

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=99.91  E-value=9.5e-24  Score=199.80  Aligned_cols=143  Identities=11%  Similarity=0.095  Sum_probs=112.9

Q ss_pred             hhcCCCCCCeeEeEEe-----------ccCCCcccccccCcc----------------cCC------------CC-----
Q psy14621         94 QLKGLNPTDVNVPVIG-----------GHAGITIIPLISQAT----------------PSV------------SF-----  129 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViG-----------eHsGds~vp~wS~a~----------------p~~------------~~-----  129 (248)
                      +.+|++|++|+++|+|           +| |++++|.||...                |+.            ++     
T Consensus       187 ~~lgv~~~~v~~~v~GlNH~~w~~~v~~~-G~d~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~  265 (450)
T 1s6y_A          187 KLLGVDADRVHIDFAGLNHMVFGLHVYLD-GVEVTEKVIDLVAHPDRSGVTMKNIVDLGWEPDFLKGLKVLPCPYHRYYF  265 (450)
T ss_dssp             HHHTSCGGGEEEEEEEETTEEEEEEEEET-TEECHHHHHHHHSCC------------CCCCHHHHHHHCSBCCGGGHHHH
T ss_pred             HHhCCCHHHcEEEEEeeecceeEEEeeeC-CcCchHhHHHHHhhhccccccccccccCccHHHHHHhcCCccchhhhhhc
Confidence            8889999999999999           99 999999998732                221            10     


Q ss_pred             -ChH-------------HHHHHHHHHhhccceee-----eccCC---CCchhHHHHHHHHHHHHHHhcccCCCCeEEEee
Q psy14621        130 -PDD-------------QLKALTGRIQEAGTEVV-----KAKAG---AGSATLSMAYAGARFAFSLIQGLKGESNVIECA  187 (248)
Q Consensus       130 -~~~-------------~~~~i~~~v~~~g~eIi-----~~k~g---kgst~~siA~a~~~iv~aIl~~l~~~~~il~~s  187 (248)
                       +++             .+.++.+++++++++|+     +.| +   .+.+.+++|.++++|++||++   |+++++|++
T Consensus       266 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k-~~~~~~~~~~~~~~~a~~ii~AI~~---d~~~~~~vs  341 (450)
T 1s6y_A          266 QTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIK-PPQLEKRGGAYYSDAACSLISSIYN---DKRDIQPVN  341 (450)
T ss_dssp             SHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC------------CCSCCHHHHHHHHHHHHHH---TCCCEEEEE
T ss_pred             CCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccc-cchhhcccchHHHHHHHHHHHHHHc---CCCeEEEEE
Confidence             112             12356788999999999     432 1   013344667999999999999   999999998


Q ss_pred             -EecCCCC---CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        188 -YVKSDVT---EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       188 -~~~g~yg---~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                       +.+|.|+   .++|+++||+||++|++.++.. +|+++|+.+++.++..=+-.++.++
T Consensus       342 v~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~~-~L~~~e~~l~~~~~~~e~l~veAa~  399 (450)
T 1s6y_A          342 TRNNGAIASISAESAVEVNCVITKDGPKPIAVG-DLPVAVRGLVQQIKSFERVAAEAAV  399 (450)
T ss_dssp             EECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCceecCCCCCeEEEEeEEEcCCCeEEeecC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence             8899884   7999999999999999999988 6999999999999877666666553

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=99.88  E-value=1.2e-22  Score=193.30  Aligned_cols=201  Identities=17%  Similarity=0.246  Sum_probs=146.7

Q ss_pred             CCcEEEEEcCCCcc-HHHHHHHHHhC--CC-cceEEEEecCC--chhhHhhhcCcc-----CCCeEEEEcCc-------h
Q psy14621         32 NNAKVMVAGASGGI-GQPLSLLLKQS--PL-VDHLSLYDIVH--TPGVAADLSHIE-----SKAHVQAFNGA-------D   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~V-G~~~a~~l~~~--~l-~~elvLiDi~~--a~g~a~DL~~~~-----~~~~v~~~~~~-------d   93 (248)
                      +++||+|||| |.+ |.++|+.|+.+  ++ .+||+|+|+++  +++. .|+.+..     .+.+|+.+++.       |
T Consensus        27 ~~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~-~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD  104 (472)
T 1u8x_X           27 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRI-AGACDVFIREKAPDIEFAATTDPEEAFTDVD  104 (472)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHH-HHHHHHHHHHHCTTSEEEEESCHHHHHSSCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHH-HHHHHHHhccCCCCCEEEEECCHHHHHcCCC
Confidence            4569999999 888 55678888887  88 89999999998  5663 5666542     35567665431       1


Q ss_pred             --------------------------------------------------------------------------------
Q psy14621         94 --------------------------------------------------------------------------------   93 (248)
Q Consensus        94 --------------------------------------------------------------------------------   93 (248)
                                                                                                      
T Consensus       105 ~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~  184 (472)
T 1u8x_X          105 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRL  184 (472)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHH
T ss_pred             EEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Confidence                                                                                            


Q ss_pred             ---------------------hhcCCCC-CCeeEeEEe-----------c-cCCCcccccccCcc------c---C----
Q psy14621         94 ---------------------QLKGLNP-TDVNVPVIG-----------G-HAGITIIPLISQAT------P---S----  126 (248)
Q Consensus        94 ---------------------~~l~v~p-~~V~~~ViG-----------e-HsGds~vp~wS~a~------p---~----  126 (248)
                                           +.+|++| ++|+++|+|           + | |++++|.||...      |   +    
T Consensus       185 ~p~~rViG~c~~~~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~h-G~d~~p~~~~~~~~~g~~~~~~~~~~~  263 (472)
T 1u8x_X          185 RPNSKILNICDMPVGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQE-GNDLMPKLKEHVSQYGYIPKTEAEAVE  263 (472)
T ss_dssp             STTCCEEECCSHHHHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETT-CCBCHHHHHHHHHHHSSCCCC------
T ss_pred             CCCCCEEEeCCcHHHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCC-CCEehHhHHHHHHhcCCCccccccccc
Confidence                                 8889998 999999999           9 9 999999998842      1   1    


Q ss_pred             CCCChHH------------------------HHHHHHH----------Hhh----ccceeeeccCC--CC---chhH---
Q psy14621        127 VSFPDDQ------------------------LKALTGR----------IQE----AGTEVVKAKAG--AG---SATL---  160 (248)
Q Consensus       127 ~~~~~~~------------------------~~~i~~~----------v~~----~g~eIi~~k~g--kg---st~~---  160 (248)
                      ..+..+.                        .+++.++          +++    ..+++++.  +  ||   ++.|   
T Consensus       264 ~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  341 (472)
T 1u8x_X          264 ASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDM--ITREQSSENSEIKID  341 (472)
T ss_dssp             -CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHH--HHHHTSCCSCSSCCC
T ss_pred             cchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh--hhhcCCccccccccc
Confidence            0011000                        1222222          223    33333331  2  44   4455   


Q ss_pred             HHHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC---CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q psy14621        161 SMAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT---EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKK  236 (248)
Q Consensus       161 siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg---~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~  236 (248)
                      +++.++++|++||++   |+++++|++ +.+|.|+   .++|+++||+||++|++.+... +|+++|+.+++.-...=+-
T Consensus       342 ~~~~~a~~ii~AI~~---d~~~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~~-~Lp~~~~~l~~~~~~~e~l  417 (472)
T 1u8x_X          342 DHASYIVDLARAIAY---NTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVG-TIPQFQKGLMEQQVSVEKL  417 (472)
T ss_dssp             TTTHHHHHHHHHHHH---TCCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc---CCCeEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeecC-CCCHHHHHHHHHHHHHHHH
Confidence            999999999999999   999999998 8889883   7999999999999999999988 6999999988876655444


Q ss_pred             HHHHH
Q psy14621        237 NIAKG  241 (248)
Q Consensus       237 ~i~~~  241 (248)
                      .++.+
T Consensus       418 ~veAa  422 (472)
T 1u8x_X          418 TVEAW  422 (472)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44444

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.36  E-value=4e-11  Score=113.29  Aligned_cols=73  Identities=14%  Similarity=0.103  Sum_probs=60.0

Q ss_pred             HHHHHHHHHhcccCCCCeEEEee-EecCCC-C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        165 AGARFAFSLIQGLKGESNVIECA-YVKSDV-T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       165 a~~~iv~aIl~~l~~~~~il~~s-~~~g~y-g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      ++++|++||++   |++++++++ +.+|.| +  .++++++||++|++|++.+... +|++.++.+++.-...=+-.++.
T Consensus       327 ~~~~ii~aI~~---d~~~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~~g-~Lp~~~~~l~~~~~~~e~l~veA  402 (450)
T 3fef_A          327 EGVNIIAALLG---LGELVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPILSG-ALPKGVEMLAARHISNQEAVADA  402 (450)
T ss_dssp             CHHHHHHHHTT---SCCEEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBCCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc---CCCeEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceecccC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999   999999998 888888 4  6999999999999999998766 69999999876655444444444


Q ss_pred             H
Q psy14621        241 G  241 (248)
Q Consensus       241 ~  241 (248)
                      +
T Consensus       403 a  403 (450)
T 3fef_A          403 G  403 (450)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.91  E-value=8.5e-08  Score=91.21  Aligned_cols=66  Identities=14%  Similarity=0.171  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHhcccCCCCeEEEeeEec-CCC-C--CceEEEeeEEEcCCcEEEEecCCC-CCHHHHHH-HHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECAYVK-SDV-T--EASYFSTPVHLGKNGIEKNLGLGK-LSDFEKEL-VKAAVPE  233 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s~~~-g~y-g--~~v~~s~Pv~lg~~Gv~~i~~l~~-Ls~~E~~~-L~~Sa~~  233 (248)
                      -.++.|++||..   |++.++.+...+ |.. +  .+++.-+||+++++|++.+. ..+ |.+..... ++.-...
T Consensus       354 e~a~~ii~ai~~---~~~~~~~vnv~N~G~I~~lp~d~vVEvp~~v~~~G~~p~~-~g~~lP~~~~~l~~~~~~~~  425 (480)
T 1obb_A          354 EQHIPFIDALLN---DNKARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEK-IEPPLPDRVVKYYLRPRIMR  425 (480)
T ss_dssp             CSHHHHHHHHHH---CCCEEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECC-CSSCCCHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHh---CCCeEEEEEeeCCceeCCCCCCeEEEEEEEEcCCCCEeec-cCCCCCHHHHhHHHHHHHHH
Confidence            457899999999   899888887444 333 3  78999999999999999975 335 88777776 5544433

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=98.81  E-value=5.7e-08  Score=92.36  Aligned_cols=57  Identities=9%  Similarity=0.092  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhcccCCCCeEEEee-EecCCC-C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHH
Q psy14621        165 AGARFAFSLIQGLKGESNVIECA-YVKSDV-T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKE  225 (248)
Q Consensus       165 a~~~iv~aIl~~l~~~~~il~~s-~~~g~y-g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~  225 (248)
                      .++++++||.+   |++.++.+. .-+|.. +  .|.+.-+||+++++|+..+- ++++-+....
T Consensus       345 ~a~~ii~AI~~---~~~~~~~vNv~N~G~I~nLP~DavVEVpc~Vd~~Gi~P~~-vg~~p~~~~~  405 (477)
T 3u95_A          345 QHIPFINAIAN---NKRVRLFLNVENQGALKDFPDDLVMELPVWVDSSGIHREK-VEPDLTHRIK  405 (477)
T ss_dssp             SHHHHHHHHHH---CCCEEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECC-CCSCCCHHHH
T ss_pred             HHHHHHHHHhC---CCCeEEEEEeecCcccCCCCCCcEEEEEEEEcCCCccccc-CCCCCHHHHH
Confidence            45789999999   999999887 444444 2  69999999999999998753 3234444433

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.19  E-value=0.0048  Score=54.14  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=32.7

Q ss_pred             cccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         28 LYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        28 ~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+....+||+|||+ |.+|..+|..|+..+.  +++++|+++
T Consensus        10 ~~~~~~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~   48 (302)
T 1f0y_A           10 AKKIIVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTE   48 (302)
T ss_dssp             --CCCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             cccccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCH
Confidence            33444579999999 9999999999999886  899999986

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.09  E-value=0.0046  Score=49.68  Aligned_cols=33  Identities=18%  Similarity=0.313  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|+|||| |-.|.++|+.|+..++  +++|+|..+
T Consensus         3 ~dV~IIGa-GpaGL~aA~~La~~G~--~V~v~Ek~~   35 (336)
T 3kkj_A            3 VPIAIIGT-GIAGLSAAQALTAAGH--QVHLFDKSR   35 (336)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCC
Confidence            46999999 9999999999999998  899999765

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.02  E-value=0.0073  Score=45.80  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .|||.|+|+ |++|..++..|...+.  +++++|.++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCH
Confidence            479999998 9999999999998884  899999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.01  E-value=0.007  Score=49.39  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=31.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|+||++++..|..++.  ++++++.++
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~   34 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNA   34 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCc
Confidence            6999999999999999999999984  899999876

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=95.89  E-value=0.0071  Score=53.82  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|||+|||| |-+|.++|+.|..+++  +++++|..+
T Consensus         1 sm~V~IVGa-GpaGl~~A~~L~~~G~--~v~v~Er~~   34 (412)
T 4hb9_A            1 SMHVGIIGA-GIGGTCLAHGLRKHGI--KVTIYERNS   34 (412)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            489999999 9999999999999998  899998754

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.83  E-value=0.013  Score=55.44  Aligned_cols=47  Identities=17%  Similarity=0.141  Sum_probs=38.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC--chhhHhhhcCc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH--TPGVAADLSHI   80 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~--a~g~a~DL~~~   80 (248)
                      +.|||+|||+ |.+|..+|..|+.. +.. +++++|+++  +++.+..|+..
T Consensus        17 ~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g   66 (478)
T 3g79_A           17 PIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRG   66 (478)
T ss_dssp             SCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTT
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhc
Confidence            4579999999 99999999999999 754 899999987  45566666653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.74  E-value=0.013  Score=43.05  Aligned_cols=35  Identities=34%  Similarity=0.387  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+|+ |.+|..++..|...+ ..+++++|.++
T Consensus         5 ~~~v~I~G~-G~iG~~~~~~l~~~g-~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGA-GKIGQMIAALLKTSS-NYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHCS-SEEEEEEESCH
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCC-CceEEEEeCCH
Confidence            469999999 999999999999998 34799999876

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.72  E-value=0.01  Score=49.51  Aligned_cols=41  Identities=20%  Similarity=0.130  Sum_probs=32.5

Q ss_pred             ccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         27 SLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        27 ~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .....+.+||.|+||+|++|.+++..|..++.  ++++++.++
T Consensus        15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~   55 (236)
T 3e8x_A           15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNE   55 (236)
T ss_dssp             ------CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSG
T ss_pred             cccCcCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECCh
Confidence            33445678999999999999999999999985  899999876

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.71  E-value=0.01  Score=50.57  Aligned_cols=42  Identities=17%  Similarity=0.200  Sum_probs=31.4

Q ss_pred             ccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         25 HLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        25 ~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++......+||+|||+ |++|.++|..|+..+.  ++.++|+++
T Consensus        11 ~~~~~~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~   52 (245)
T 3dtt_A           11 HHENLYFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDP   52 (245)
T ss_dssp             --------CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             cccccccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            34445556789999998 9999999999999885  899999875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.69  E-value=0.011  Score=48.49  Aligned_cols=34  Identities=18%  Similarity=0.150  Sum_probs=31.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|+||+.++..|..++.  ++++++.++
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~   34 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDP   34 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecc
Confidence            6899999999999999999999985  899999875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.67  E-value=0.011  Score=51.08  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|+||++++..|..++.  +++.+..++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~   34 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKP   34 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCC
Confidence            7999999999999999999999986  788887765

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.67  E-value=0.0084  Score=52.23  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+|||+ |.+|..+|..++..+.  +++++|+++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~   37 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINT   37 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCH
Confidence            469999999 9999999999999997  899999987

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=95.60  E-value=0.0084  Score=46.16  Aligned_cols=34  Identities=18%  Similarity=0.129  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++|.|+|+ |.+|.++|..|..++.  +++++|.++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCH
Confidence            468999999 9999999999999986  899999976

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=95.56  E-value=0.018  Score=50.44  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=31.5

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++||.|+||+|+||++++..|..++.--+++.+|...
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~   60 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALT   60 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccc
Confidence            456899999999999999999999988444777887654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.54  E-value=0.011  Score=51.22  Aligned_cols=34  Identities=32%  Similarity=0.528  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|||+|||+ |.+|.++|..|...+.  ++.++|.++
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~   36 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWP   36 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCH
Confidence            579999999 9999999999999885  899999875

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.54  E-value=0.012  Score=51.98  Aligned_cols=40  Identities=15%  Similarity=0.228  Sum_probs=33.2

Q ss_pred             ccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         27 SLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        27 ~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +....+++||+|||+ |.+|..+|..|...+.  ++.++|+++
T Consensus        15 ~~~~~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~   54 (310)
T 3doj_A           15 VPRGSHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTL   54 (310)
T ss_dssp             ---CCCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSG
T ss_pred             CcccccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            333445689999999 9999999999999986  899999987

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.52  E-value=0.013  Score=48.90  Aligned_cols=36  Identities=14%  Similarity=0.343  Sum_probs=29.8

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+||+|||+ |++|.++|..|...+.  ++.++|.++
T Consensus        17 ~~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~   52 (209)
T 2raf_A           17 FQGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKD   52 (209)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            34679999998 9999999999999885  899998764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.51  E-value=0.01  Score=51.79  Aligned_cols=37  Identities=11%  Similarity=0.241  Sum_probs=32.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCC-cceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPL-VDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l-~~elvLiDi~~   69 (248)
                      +++||+|||+ |++|.+++..|...+. ..++.++|+++
T Consensus         2 ~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            2 NTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            4579999999 9999999999999885 45899999987

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.47  E-value=0.0078  Score=50.50  Aligned_cols=36  Identities=17%  Similarity=0.205  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEE-EecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSL-YDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvL-iDi~~   69 (248)
                      ++++||+|||+ |++|.++|..|...+.  ++.+ +|.++
T Consensus        21 m~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~   57 (220)
T 4huj_A           21 QSMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGP   57 (220)
T ss_dssp             GGSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCG
T ss_pred             hcCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCH
Confidence            44689999998 9999999999999886  7777 89876

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.46  E-value=0.011  Score=48.58  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+||+|+||.+++..|..++.  ++++++.++
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~   38 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHP   38 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCG
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCc
Confidence            57999999999999999999999984  899999875

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.43  E-value=0.017  Score=46.33  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||.|+||+|++|.+++..|..++.  ++++++.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~   37 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDS   37 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeCh
Confidence            7999999999999999999999884  899999875

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.42  E-value=0.013  Score=48.29  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|++|..++..|..++.  ++++++.++
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~   34 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKV   34 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSG
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            6999999999999999999999984  899999875

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.36  E-value=0.015  Score=49.88  Aligned_cols=33  Identities=24%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |++|.++|..|...+.  ++.++|.++
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~   33 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVP   33 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCc
Confidence            59999999 9999999999999885  899999876

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.34  E-value=0.015  Score=47.21  Aligned_cols=37  Identities=22%  Similarity=0.243  Sum_probs=33.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||.|+||+|++|.+++..|..++...++++++.++
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~   41 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKA   41 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCC
Confidence            4699999999999999999999998666899999875

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.31  E-value=0.02  Score=44.97  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=32.0

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...++|.|+|+ |.+|..++..|...+.  +++++|.++
T Consensus        17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~   52 (155)
T 2g1u_A           17 QKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNE   52 (155)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCG
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCH
Confidence            35679999998 9999999999999885  899999876

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.28  E-value=0.018  Score=47.26  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+||||+|++|.+++..|...+.  ++.++|.++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~   34 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999559999999999999885  899999875

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.23  E-value=0.013  Score=52.68  Aligned_cols=34  Identities=26%  Similarity=0.602  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||+|||| |.+|+.+|..++..|+  +++|+|+++
T Consensus         6 ~~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCH
T ss_pred             CCeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCH
Confidence            359999999 9999999999999998  899999987

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.22  E-value=0.012  Score=49.95  Aligned_cols=37  Identities=22%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCc--ceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLV--DHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~--~elvLiDi~~   69 (248)
                      +++||+|||+ |++|.++|..|...+..  .++.++|.++
T Consensus         3 ~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~   41 (262)
T 2rcy_A            3 ENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSK   41 (262)
T ss_dssp             SSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCc
Confidence            3579999999 99999999999887742  4799999875

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.21  E-value=0.018  Score=44.61  Aligned_cols=35  Identities=20%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -+.+|.|+|+ |.+|..+|..|...+.  +++++|.++
T Consensus         6 ~~~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~   40 (140)
T 3fwz_A            6 ICNHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSR   40 (140)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCH
T ss_pred             CCCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCH
Confidence            3569999999 9999999999999886  899999987

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.21  E-value=0.012  Score=53.35  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|||+|||+ |.+|.++|..|+..+.  ++.++|.++
T Consensus        27 ~~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~   62 (356)
T 3k96_A           27 PFKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYES   62 (356)
T ss_dssp             CCCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCH
T ss_pred             ccCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            34589999999 9999999999999885  899999975

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.05  E-value=0.025  Score=50.27  Aligned_cols=36  Identities=25%  Similarity=0.397  Sum_probs=33.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+|||+ |.+|.++|..|...+...+++++|.++
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            479999998 999999999999999866899999987

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.04  E-value=0.025  Score=49.28  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|||.|+||+|+||++++..|..++.  +++++|.+.
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   47 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPS   47 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTT
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCh
Confidence            457999999999999999999999884  899998875

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.04  E-value=0.018  Score=50.59  Aligned_cols=37  Identities=16%  Similarity=0.365  Sum_probs=30.0

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++||.|+||+|+||++++..|..++.  +++.+|.+.
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~   53 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRP   53 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            3567999999999999999999999984  788888865

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.03  E-value=0.018  Score=48.09  Aligned_cols=35  Identities=20%  Similarity=0.223  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++||+|||+ |++|.+++..|...+.  ++.++|.++
T Consensus        27 ~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~   61 (215)
T 2vns_A           27 EAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNP   61 (215)
T ss_dssp             --CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSH
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4579999998 9999999999998885  799999875

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.02  E-value=0.017  Score=51.45  Aligned_cols=34  Identities=18%  Similarity=0.263  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.|||+|||+ |.+|.++|..|+..+.  ++.++|.+
T Consensus         2 ~~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~   35 (335)
T 3ghy_A            2 SLTRICIVGA-GAVGGYLGARLALAGE--AINVLARG   35 (335)
T ss_dssp             CCCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEECh
Confidence            3579999999 9999999999999885  89999974

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.02  E-value=0.019  Score=49.75  Aligned_cols=37  Identities=24%  Similarity=0.342  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||+|||+ |++|.++|..|...+.-.++.++|.++
T Consensus         5 ~~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            5 EEKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ccceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4579999998 999999999998875434899999876

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.01  E-value=0.026  Score=45.64  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|||.|+||+|.+|.+++..|+ ++.  +++++|.++
T Consensus         2 ~kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~   36 (202)
T 3d7l_A            2 NAMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHS   36 (202)
T ss_dssp             CSCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSS
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCc
Confidence            34689999999999999999999 874  799998864

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=94.96  E-value=0.025  Score=47.01  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=33.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|++|.+++..|+.++...+++++|.++
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~   54 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   54 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCC
Confidence            45799999999999999999999998666899999876

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.94  E-value=0.018  Score=54.33  Aligned_cols=36  Identities=14%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|||+|||+ |.+|..+|..|+..+.  +++++|+++
T Consensus         6 ~~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~   41 (478)
T 2y0c_A            6 HGSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQ   41 (478)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCH
Confidence            35799999999 9999999999999886  899999976

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=94.89  E-value=0.024  Score=50.16  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.+|.++|..|...+.  ++.++|.++
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSD   35 (320)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTT
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCh
Confidence            79999999 9999999999999884  899999865

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=94.89  E-value=0.035  Score=49.21  Aligned_cols=38  Identities=16%  Similarity=0.443  Sum_probs=32.2

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHh--CCCcceEEEEecC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQ--SPLVDHLSLYDIV   68 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~--~~l~~elvLiDi~   68 (248)
                      +..+++||.|+||+|+||++++..|..  .+.  +++++|.+
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~   45 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKF   45 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECC
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECC
Confidence            345678999999999999999999999  665  88888864

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=94.88  E-value=0.027  Score=48.49  Aligned_cols=35  Identities=26%  Similarity=0.430  Sum_probs=31.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||+ |++|.++|..|...+...+++++|.++
T Consensus         2 ~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            59999998 999999999999888644799999976

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.88  E-value=0.023  Score=49.31  Aligned_cols=33  Identities=15%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||+ |.+|.++|..|...+.  +++++|+++
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSP   34 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSG
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCH
Confidence            79999999 9999999999999985  899999986

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=94.86  E-value=0.047  Score=47.48  Aligned_cols=37  Identities=19%  Similarity=0.185  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.|||.|+||+|+||++++..|..++.--+++.+|..
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~   38 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKL   38 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            3579999999999999999999987632378888875

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.83  E-value=0.012  Score=55.17  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.|||.|+|+ |.||+++|-.|...+.  +++++|.++
T Consensus         2 ~~M~iiI~G~-G~vG~~la~~L~~~~~--~v~vId~d~   36 (461)
T 4g65_A            2 NAMKIIILGA-GQVGGTLAENLVGENN--DITIVDKDG   36 (461)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHTCSTTE--EEEEEESCH
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCH
Confidence            6799999999 9999999999998875  899999987

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=94.82  E-value=0.023  Score=50.12  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=29.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||+ |.+|.++|..|...+.  ++.++|.++
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRD   35 (312)
T ss_dssp             -CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTT
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCc
Confidence            69999999 9999999999999885  899999865

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.81  E-value=0.014  Score=48.44  Aligned_cols=33  Identities=12%  Similarity=0.115  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+|+ |.+|+++|..|...+.  +++++|.++
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~   33 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDR   33 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCH
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCH
Confidence            68999998 9999999999999886  899999876

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.79  E-value=0.033  Score=48.79  Aligned_cols=40  Identities=13%  Similarity=0.199  Sum_probs=33.5

Q ss_pred             cccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         28 LYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        28 ~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +...+.|||.|+||+|+||.+++..|..++.  +++++|.+.
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~   54 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFA   54 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCS
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCC
Confidence            3444568999999999999999999999884  889998854

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.77  E-value=0.031  Score=52.63  Aligned_cols=34  Identities=15%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+|||+ |.+|..+|..++..++  +++|+|+++
T Consensus        54 i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~   87 (460)
T 3k6j_A           54 VNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNE   87 (460)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcH
Confidence            479999999 9999999999999997  999999986

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=94.77  E-value=0.03  Score=48.42  Aligned_cols=36  Identities=14%  Similarity=0.229  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|+||++++..|..++.  +++++|.+.
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~   46 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNN   46 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCT
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCC
Confidence            567999999999999999999999885  788888764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.77  E-value=0.03  Score=48.74  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||.|+||+|+||++++..|..++.  +++++|.+.
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~   37 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRS   37 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCC
Confidence            357999999999999999999999884  899998865

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.77  E-value=0.021  Score=53.34  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.|||+|||+ |.+|.++|..|+. +.  +++++|+++
T Consensus        35 ~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~   68 (432)
T 3pid_A           35 EFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQ   68 (432)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCH
Confidence            4579999999 9999999999987 64  899999986

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.76  E-value=0.04  Score=49.37  Aligned_cols=37  Identities=24%  Similarity=0.234  Sum_probs=32.3

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..++||.|+||+|+||.+++..|..++.  +++++|.+.
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   63 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKK   63 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCC
Confidence            3568999999999999999999999884  788888865

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=94.76  E-value=0.028  Score=50.31  Aligned_cols=36  Identities=25%  Similarity=0.383  Sum_probs=30.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .+++||.|+||+|+||++++..|..++.  +++++|..
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~   44 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNL   44 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEec
Confidence            4678999999999999999999999885  89999864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=94.76  E-value=0.02  Score=53.65  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.+|.++|..|+..+.  +++++|+++
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDR   35 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCH
Confidence            79999999 9999999999999986  899999987

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=94.75  E-value=0.032  Score=45.87  Aligned_cols=35  Identities=29%  Similarity=0.444  Sum_probs=30.3

Q ss_pred             CcE-EEEEcCCCccHHHHHHHHH-hCCCcceEEEEecCC
Q psy14621         33 NAK-VMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~K-V~IiGaaG~VG~~~a~~l~-~~~l~~elvLiDi~~   69 (248)
                      +|| |.|+||+|++|.+++..|+ ..+.  ++++++.++
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~   40 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQL   40 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSH
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCc
Confidence            345 9999999999999999999 7886  899998864

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=94.73  E-value=0.024  Score=47.40  Aligned_cols=38  Identities=18%  Similarity=0.194  Sum_probs=31.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++||.|+||+|++|.+++..|+.++- -++++++.++
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~-~~V~~~~R~~   58 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQT-IKQTLFARQP   58 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTT-EEEEEEESSG
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCC-ceEEEEEcCh
Confidence            3456899999999999999999999982 2789998875

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=94.72  E-value=0.028  Score=48.35  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++||.|+||+|+||++++..|..++.  +++.+|.+.
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   41 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLR   41 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCC
Confidence            357999999999999999999999885  788888743

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.71  E-value=0.028  Score=49.79  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||+ |.+|..+|..|...+.  ++.++|.++
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            479999999 9999999999999885  799999875

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.70  E-value=0.024  Score=53.43  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|||+|||+ |.||..+|..|+..+.-.+++++|+++
T Consensus         9 ~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~   44 (481)
T 2o3j_A            9 VSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNT   44 (481)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            579999999 999999999999874334899999976

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=94.70  E-value=0.036  Score=49.06  Aligned_cols=35  Identities=20%  Similarity=0.396  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+||+|||+ |.+|..+|..|...+.  ++.++|+++
T Consensus        30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~   64 (320)
T 4dll_A           30 YARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTP   64 (320)
T ss_dssp             CCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCH
Confidence            4579999999 9999999999999986  899999986

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.68  E-value=0.025  Score=50.19  Aligned_cols=38  Identities=13%  Similarity=0.120  Sum_probs=31.2

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCc--ceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLV--DHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~--~elvLiDi~~   69 (248)
                      +++|||+|||+ |++|.++|..|...++.  .++.++|.++
T Consensus        20 ~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           20 FQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             --CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            34579999999 99999999999998842  4799999875

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=94.68  E-value=0.031  Score=50.40  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+..+|+|||| |-.|.++|+.|+..++  +++|+|...
T Consensus        21 ~~~~dV~IVGa-G~aGl~~A~~La~~G~--~V~v~E~~~   56 (407)
T 3rp8_A           21 QGHMKAIVIGA-GIGGLSAAVALKQSGI--DCDVYEAVK   56 (407)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            34579999999 9999999999999997  899999865

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.67  E-value=0.03  Score=49.09  Aligned_cols=35  Identities=17%  Similarity=0.124  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++||+|||+ |.+|.++|..|...+.  ++.++|+++
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~   40 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNP   40 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCH
Confidence            4579999999 9999999999999986  899999986

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=94.63  E-value=0.032  Score=48.08  Aligned_cols=34  Identities=24%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|+||++++..|..++.  +++.+|.+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   34 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLS   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            6899999999999999999999985  888888754

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.62  E-value=0.04  Score=47.45  Aligned_cols=47  Identities=28%  Similarity=0.410  Sum_probs=38.2

Q ss_pred             ccccccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         21 PLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        21 ~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++...+.+...+.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        16 ~~~~~~~~~~~~~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~   62 (286)
T 1xu9_A           16 PLNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSK   62 (286)
T ss_dssp             CCSSCCCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             ccccCCChhhcCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            33345555555677999999999999999999999985  799999876

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.62  E-value=0.026  Score=49.75  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++||.|+||+|++|++++..|...+  .++++++.+.
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g--~~V~~l~R~~   44 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAH--RPTYILARPG   44 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTT--CCEEEEECSS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCC--CCEEEEECCC
Confidence            35799999999999999999999988  3788888865

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.62  E-value=0.032  Score=51.72  Aligned_cols=33  Identities=15%  Similarity=0.160  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.||.++|..|+..+.  +++++|+++
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~   33 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSS   33 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            69999998 9999999999999886  899999976

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.61  E-value=0.028  Score=49.78  Aligned_cols=34  Identities=29%  Similarity=0.501  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||+|||+ |..|..+|..|+ .+.  +++++|+++
T Consensus        11 ~~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~   44 (293)
T 1zej_A           11 HHMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSE   44 (293)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCH
T ss_pred             CCCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCH
Confidence            5689999999 999999999999 887  899999987

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.59  E-value=0.038  Score=43.20  Aligned_cols=35  Identities=14%  Similarity=0.169  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...||.|+|+ |.+|+.++..|...+.  +++++|.++
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~   36 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCC
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCC
Confidence            4569999998 9999999999998875  899999864

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=94.58  E-value=0.022  Score=48.41  Aligned_cols=35  Identities=14%  Similarity=0.263  Sum_probs=31.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCc--ceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLV--DHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~--~elvLiDi~~   69 (248)
                      +||+|||+ |++|.+++..|...+..  .++.++|+++
T Consensus         3 ~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            69999998 99999999999998863  4899999986

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=94.57  E-value=0.018  Score=49.41  Aligned_cols=34  Identities=9%  Similarity=0.032  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ..|||+|||+ |.+|.++|..|...+.  +++++|..
T Consensus         5 ~~mkI~IIG~-G~~G~sLA~~L~~~G~--~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDD-GSSTVNMAEKLDSVGH--YVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECC-SCCCSCHHHHHHHTTC--EEEECSSG
T ss_pred             CCcEEEEEee-CHHHHHHHHHHHHCCC--EEEEecCH
Confidence            4589999999 9999999999999986  88888874

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=94.54  E-value=0.037  Score=48.09  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+||+|+||++++..|..++.  +++.+|.+.
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   35 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQ   35 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            46999999999999999999999884  788888654

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.53  E-value=0.028  Score=52.95  Aligned_cols=46  Identities=15%  Similarity=0.084  Sum_probs=37.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCc
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHI   80 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~   80 (248)
                      +|||.|+||+|+||++++..|..++.  +++.++.+.  ......|+.+.
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~~v~~d~~~~  194 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPGKRFWDPLNP  194 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTTCEECCTTSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCccceeecccch
Confidence            78999999999999999999999986  899998876  33344555443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.53  E-value=0.023  Score=49.32  Aligned_cols=34  Identities=15%  Similarity=0.267  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||+ |++|.++|..|...+.  ++.++|+++
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~   34 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNP   34 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSG
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCH
Confidence            369999998 9999999999999885  799999987

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=94.52  E-value=0.03  Score=50.47  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=29.0

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .-++|||.|+|| |+||..+|..|...   .++.+.|++.
T Consensus        13 ~g~~mkilvlGa-G~vG~~~~~~L~~~---~~v~~~~~~~   48 (365)
T 3abi_A           13 EGRHMKVLILGA-GNIGRAIAWDLKDE---FDVYIGDVNN   48 (365)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHTTT---SEEEEEESCH
T ss_pred             cCCccEEEEECC-CHHHHHHHHHHhcC---CCeEEEEcCH
Confidence            345689999999 99999999999765   3789999875

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=94.50  E-value=0.04  Score=48.32  Aligned_cols=37  Identities=19%  Similarity=0.136  Sum_probs=32.3

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++||.|+||+|+||++++..|..++.  +++.+|...
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   59 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFS   59 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            4568999999999999999999999884  788888754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.48  E-value=0.035  Score=52.04  Aligned_cols=35  Identities=14%  Similarity=0.223  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+||+|||+ |.+|..+|..|+..+.  +++++|+++
T Consensus        36 ~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~   70 (463)
T 1zcj_A           36 PVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDP   70 (463)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCH
Confidence            4569999999 9999999999999987  899999987

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=94.47  E-value=0.034  Score=47.70  Aligned_cols=33  Identities=27%  Similarity=0.179  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |++|.++|..|...+.  +++++|.++
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~   33 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQ   33 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            58999998 9999999999999886  899999876

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=94.46  E-value=0.04  Score=48.31  Aligned_cols=36  Identities=17%  Similarity=0.345  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+||+|+||++++..|..++.  +++++|.+.
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   61 (343)
T 2b69_A           26 DRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFF   61 (343)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCS
T ss_pred             CCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            567999999999999999999999884  888888753

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.45  E-value=0.03  Score=48.36  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|||+|||+ |.+|..+|..|...+.  ++.++| ++
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~   35 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IG   35 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SS
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CH
Confidence            3479999998 9999999999998875  899999 76

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=94.44  E-value=0.028  Score=47.70  Aligned_cols=34  Identities=12%  Similarity=0.066  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |++|.++|..|...+. .++.++|.++
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~-~~v~~~~r~~   34 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGA   34 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSH
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCC-CeEEEECCCH
Confidence            58999998 9999999999988774 4899999876

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.39  E-value=0.02  Score=50.92  Aligned_cols=38  Identities=13%  Similarity=0.340  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCc-----ceEEEEecCCc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLV-----DHLSLYDIVHT   70 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~-----~elvLiDi~~a   70 (248)
                      ..+||+|||+ |++|.++|..|+..+..     .++.++|.++.
T Consensus         7 ~~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            7 ASKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            3479999999 99999999999987621     48999998763

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=94.39  E-value=0.04  Score=48.04  Aligned_cols=34  Identities=24%  Similarity=0.447  Sum_probs=29.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ++||.|+||+|+||++++..|..++.  +++++|.+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~   34 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNL   34 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCC
Confidence            36899999999999999999999874  88888864

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=94.38  E-value=0.044  Score=48.46  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+..|+|||+ |-+|.++|+.|+.++.  +++|+|...
T Consensus         5 ~~~dVvVIG~-Gi~Gls~A~~La~~G~--~V~vle~~~   39 (363)
T 1c0p_A            5 SQKRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (363)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCCEEEECC-CHHHHHHHHHHHhCCC--EEEEEeccC
Confidence            3468999999 9999999999999986  899999765

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=94.38  E-value=0.03  Score=42.37  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.||.|+|+ |.+|..++..|...+.  +++++|.++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINE   39 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCH
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            458999998 9999999999999884  789999865

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.38  E-value=0.036  Score=49.18  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~   69 (248)
                      .++||.|+||+|+||++++..|..+ +.  +++.+|.+.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~   59 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQT   59 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCCh
Confidence            4579999999999999999999887 64  788888865

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.37  E-value=0.044  Score=48.04  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+||+|+||++++..|..++.  +++++|.+.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~   55 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFA   55 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCC
Confidence            457999999999999999999999883  888888764

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=94.35  E-value=0.045  Score=47.37  Aligned_cols=35  Identities=20%  Similarity=0.517  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||+|||+ |++|..++..|...+.  ++.++|.++
T Consensus         3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~   37 (301)
T 3cky_A            3 KSIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLME   37 (301)
T ss_dssp             -CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSH
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            3579999998 9999999999998885  799999875

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.35  E-value=0.043  Score=47.71  Aligned_cols=36  Identities=19%  Similarity=0.177  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++||.|+||+|+||++++..|..++.  +++.+|.+.
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~   48 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARR   48 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCC
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            468999999999999999999999884  888888765

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=94.35  E-value=0.044  Score=47.06  Aligned_cols=35  Identities=29%  Similarity=0.563  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.+|..|+..|+ .+|.|+|.+.
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCC
Confidence            359999999 9999999999999885 6899999874

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.34  E-value=0.057  Score=44.60  Aligned_cols=38  Identities=29%  Similarity=0.133  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+||+|++|.+++..|..++--.++++++.++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~   40 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA   40 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence            46799999999999999999999984223899998864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.31  E-value=0.031  Score=52.82  Aligned_cols=35  Identities=29%  Similarity=0.427  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||+|||+ |.+|..+|..|+..+.  +++++|+++
T Consensus         4 ~~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~   38 (483)
T 3mog_A            4 NVQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISA   38 (483)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCH
Confidence            3469999999 9999999999999997  899999987

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.30  E-value=0.045  Score=47.47  Aligned_cols=35  Identities=17%  Similarity=0.155  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+||+|++|.+++..|..++.  ++++++.+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCc
Confidence            56899999999999999999999883  788888864

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.28  E-value=0.036  Score=48.52  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||+ |.+|..+|..|...+.  ++.++|+++
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSST
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            469999999 9999999999999986  899999987

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=94.28  E-value=0.054  Score=47.00  Aligned_cols=36  Identities=17%  Similarity=0.133  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||.|+||+|+||++++..|..++.  +++++|.+.
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~   45 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSA   45 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            457999999999999999999999885  788888764

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=94.26  E-value=0.042  Score=47.54  Aligned_cols=35  Identities=26%  Similarity=0.440  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||++|++|.++|..|...+.  +++++|.++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~   45 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAP   45 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCH
Confidence            46999999889999999999999885  899999876

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.26  E-value=0.041  Score=48.46  Aligned_cols=33  Identities=15%  Similarity=0.229  Sum_probs=29.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|||+|||+ |.+|.++|..|. .+.  ++.+++.++
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~   34 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQ   34 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCH
Confidence            379999999 999999999999 763  899999864

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=94.26  E-value=0.038  Score=47.42  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||+ |.+|..+|..|.. +.  ++.++|.++
T Consensus         2 ~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~   33 (289)
T 2cvz_A            2 EKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTF   33 (289)
T ss_dssp             CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSST
T ss_pred             CeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCH
Confidence            68999999 9999999999998 75  799999987

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.24  E-value=0.049  Score=47.93  Aligned_cols=37  Identities=19%  Similarity=0.136  Sum_probs=32.2

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++||.|+||+|+||++++..|..++.  +++.+|.+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   61 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFA   61 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCS
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            4568999999999999999999999884  788888754

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=94.24  E-value=0.049  Score=45.28  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|+||.+++..|+.++.  +++++|.++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~   35 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQ   35 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCh
Confidence            4799999999999999999999885  799999876

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=94.22  E-value=0.04  Score=47.63  Aligned_cols=33  Identities=27%  Similarity=0.479  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |++|.++|..|...+.  ++.++|.++
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~   33 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFP   33 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSST
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            58999998 9999999999998885  799999976

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=94.22  E-value=0.049  Score=49.03  Aligned_cols=35  Identities=26%  Similarity=0.548  Sum_probs=31.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|+|||| |-.|.++|+.|...++  +++|+|..+
T Consensus        25 ~~~dV~IVGa-G~aGl~~A~~L~~~G~--~v~v~E~~~   59 (398)
T 2xdo_A           25 SDKNVAIIGG-GPVGLTMAKLLQQNGI--DVSVYERDN   59 (398)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEECSS
T ss_pred             CCCCEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            3469999999 9999999999999987  899999865

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.21  E-value=0.049  Score=47.09  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+||+|++|++++..|..++.  +++.++.++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   36 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSI   36 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            36999999999999999999999985  788888763

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=94.20  E-value=0.034  Score=49.24  Aligned_cols=34  Identities=21%  Similarity=0.378  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+|+|||+ |.+|.++|+.|+.+++  +++|+|...
T Consensus        17 ~~dvvIIGg-G~~Gl~~A~~La~~G~--~V~llE~~~   50 (382)
T 1ryi_A           17 HYEAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   50 (382)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCCEEEECc-CHHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            469999999 9999999999999986  899999865

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=94.19  E-value=0.039  Score=46.85  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||+|||+ |++|..++..|...+  .++.++|.++
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g--~~v~~~~~~~   36 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTP--HELIISGSSL   36 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSS--CEEEEECSSH
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCC--CeEEEECCCH
Confidence            3579999998 999999999999887  4899999876

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=94.19  E-value=0.048  Score=49.05  Aligned_cols=35  Identities=17%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+|+|||| |-.|.++|+.|...++  +++|+|..+
T Consensus         4 ~~~~V~IVGa-G~aGl~~A~~L~~~G~--~v~v~E~~~   38 (397)
T 2vou_A            4 TTDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERSP   38 (397)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            4569999999 9999999999999997  899999764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=94.16  E-value=0.049  Score=47.24  Aligned_cols=34  Identities=15%  Similarity=0.188  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||.|+||+|++|.+++..|..++.  +++.++.+.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~   45 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPN   45 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTT
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCC
Confidence            3899999999999999999999884  788888875

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.14  E-value=0.033  Score=49.18  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=30.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +++||+|||+ |.+|..+|..|...+. .++.++|++
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~   57 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAA   57 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSS
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCC
Confidence            4579999999 9999999999998884 589999996

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=94.10  E-value=0.034  Score=51.24  Aligned_cols=45  Identities=13%  Similarity=0.093  Sum_probs=30.9

Q ss_pred             cccccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         22 LVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        22 ~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|.|..+.....+|+|||| |..|.++|+.|+.++.  +++|+|.++
T Consensus        16 ~n~~~~~M~~~~~dViIIGg-G~AGl~aA~~La~~G~--~V~llEk~~   60 (417)
T 3v76_A           16 ENLYFQSMVAEKQDVVIIGA-GAAGMMCAIEAGKRGR--RVLVIDHAR   60 (417)
T ss_dssp             ------------CCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             cccccccccCCCCCEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            34556666656679999999 9999999999999986  799999877

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=94.08  E-value=0.024  Score=49.50  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.+|.++|..|...+.  ++.++|.++
T Consensus         3 mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHA   35 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSC
T ss_pred             cEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEecc
Confidence            79999999 9999999999998774  789999875

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.08  E-value=0.043  Score=47.11  Aligned_cols=35  Identities=14%  Similarity=0.183  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+||+|++|.+++..|..++.  +++.++.+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCC
Confidence            46899999999999999999998873  678888764

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.07  E-value=0.034  Score=49.81  Aligned_cols=32  Identities=22%  Similarity=0.502  Sum_probs=29.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||+|||+ |++|.++|..|...+.  ++.++|.++
T Consensus        17 kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNE   48 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCH
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCH
Confidence            9999999 9999999999998874  899999875

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.05  E-value=0.053  Score=46.53  Aligned_cols=35  Identities=17%  Similarity=0.166  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+||+|++|.+++..|..++.  +++.++.+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~   38 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRES   38 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCc
Confidence            56899999999999999999999883  678888764

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.04  E-value=0.048  Score=51.05  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|||+|||+ |.+|..+|..|+..+.--+++++|+++
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            479999999 999999999999873223899999976

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.04  E-value=0.058  Score=47.51  Aligned_cols=36  Identities=28%  Similarity=0.352  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||.|+||+|+||++++..|..++.  +++++|.+.
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   43 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTA   43 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCC
Confidence            457999999999999999999999885  888888765

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.02  E-value=0.056  Score=47.11  Aligned_cols=36  Identities=19%  Similarity=0.321  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++||.|+||+|+||.+++..|..++.  +++++|.+.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~   39 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLV   39 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            357999999999999999999999985  788888765

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=94.00  E-value=0.042  Score=48.48  Aligned_cols=37  Identities=19%  Similarity=0.362  Sum_probs=29.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||.|+||+|+||++++..|..++. .+++++|.+.
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~~V~~~~r~~   81 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLK   81 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTC-CCEEEEECCS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-cEEEEEecCC
Confidence            347999999999999999999999873 3788888765

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=93.99  E-value=0.042  Score=48.29  Aligned_cols=33  Identities=36%  Similarity=0.645  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHh---CCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQ---SPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~---~~l~~elvLiDi~~   69 (248)
                      .+|+|||| |..|.++|+.|..   .++  +++++|..+
T Consensus         2 ~dV~IIGa-G~aGl~~A~~L~~~~~~G~--~V~v~Ek~~   37 (342)
T 3qj4_A            2 AQVLIVGA-GMTGSLCAALLRRQTSGPL--YLAVWDKAD   37 (342)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHSCC-CCE--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHHHhhccCCc--eEEEEECCC
Confidence            58999999 9999999999999   776  899999875

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=93.97  E-value=0.033  Score=49.09  Aligned_cols=35  Identities=26%  Similarity=0.332  Sum_probs=29.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCC----CcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSP----LVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~----l~~elvLiDi~~   69 (248)
                      |+|+|||+ |-+|.++|+.|+.++    --.+++|+|...
T Consensus         1 mdVvIIGg-Gi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             CcEEEECC-CHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            58999999 999999999999986    112899999875

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=93.96  E-value=0.045  Score=47.93  Aligned_cols=34  Identities=15%  Similarity=0.216  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+|||+ |.+|..+|..|...+.  ++.++|.++
T Consensus        30 ~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~   63 (316)
T 2uyy_A           30 DKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTA   63 (316)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSG
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            479999998 9999999999998885  799999876

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=93.92  E-value=0.033  Score=48.39  Aligned_cols=34  Identities=26%  Similarity=0.319  Sum_probs=28.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhC-----CCcceEEEEec
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQS-----PLVDHLSLYDI   67 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~-----~l~~elvLiDi   67 (248)
                      .+|||+|||+ |.+|.++|..|...     +. .++.++|.
T Consensus         7 ~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~-~~V~~~~r   45 (317)
T 2qyt_A            7 QPIKIAVFGL-GGVGGYYGAMLALRAAATDGL-LEVSWIAR   45 (317)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSS-EEEEEECC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCccccCCC-CCEEEEEc
Confidence            4479999999 99999999999887     61 38999987

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=93.91  E-value=0.052  Score=46.84  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=28.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +||.|+||+|+||++++..|..++.  +++++|.+
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~   35 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFR   35 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC--
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccC
Confidence            6899999999999999999999884  78887754

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=93.90  E-value=0.065  Score=47.81  Aligned_cols=35  Identities=23%  Similarity=0.362  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHH-hCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~-~~~l~~elvLiDi~~   69 (248)
                      .|||.|+||+|+||++++..|. .++.  +++++|.+.
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~   37 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLV   37 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCC
Confidence            4699999999999999999999 8874  889998764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=93.88  E-value=0.056  Score=46.50  Aligned_cols=35  Identities=14%  Similarity=0.132  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+||+|++|.+++..|..++.  ++++++.+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~   38 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPE   38 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCC
Confidence            57899999999999999999999884  788888874

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=93.85  E-value=0.042  Score=46.90  Aligned_cols=36  Identities=22%  Similarity=0.462  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||.|+||+|+||++++..|..++.  +++.+|.+.
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   46 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD   46 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc
Confidence            468999999999999999999999884  788887653

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.82  E-value=0.056  Score=46.13  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=30.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+|| |+||++++..|..++.  +++.++.+.
T Consensus         2 ~~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~   36 (286)
T 3gpi_A            2 SLSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSA   36 (286)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTT
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            4579999996 9999999999999885  788888764

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.81  E-value=0.038  Score=48.45  Aligned_cols=31  Identities=26%  Similarity=0.435  Sum_probs=28.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      |||+|||+ |++|.++|..|...+.  ++.++|.
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGT   31 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEc
Confidence            58999999 9999999999998875  8999998

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.79  E-value=0.064  Score=46.98  Aligned_cols=34  Identities=24%  Similarity=0.384  Sum_probs=30.1

Q ss_pred             CcEEEEEc-CCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAG-ASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiG-aaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+||| + |.+|.++|..|...+.  ++.++|.++
T Consensus        21 ~~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~   55 (298)
T 2pv7_A           21 IHKIVIVGGY-GKLGGLFARYLRASGY--PISILDRED   55 (298)
T ss_dssp             CCCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTC
T ss_pred             CCEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCc
Confidence            35999999 7 9999999999999886  788999875

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.79  E-value=0.056  Score=49.07  Aligned_cols=35  Identities=17%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||+|||+ |.+|..+|..|...+.  ++.++|+++
T Consensus        21 ~~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~   55 (358)
T 4e21_A           21 QSMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNV   55 (358)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            3479999998 9999999999999985  899999976

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=93.78  E-value=0.061  Score=46.38  Aligned_cols=33  Identities=27%  Similarity=0.397  Sum_probs=29.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      |||.|+||+|+||++++..|..++.  +++++|..
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~   33 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNL   33 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECC
Confidence            5899999999999999999999885  78888874

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.74  E-value=0.067  Score=46.23  Aligned_cols=33  Identities=30%  Similarity=0.324  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.+|..++..|...+.  ++.++|.++
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNP   38 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCH
Confidence            69999998 9999999999998885  799999876

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=93.72  E-value=0.067  Score=47.77  Aligned_cols=37  Identities=27%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+||+|+||.+++..|..++. .+++++|.+.
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~~V~~~~r~~   67 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGV-NQVHVVDNLL   67 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-SEEEEECCCT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-ceEEEEECCC
Confidence            467999999999999999999999872 3788888764

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.71  E-value=0.05  Score=48.24  Aligned_cols=35  Identities=20%  Similarity=0.242  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||+ |.+|.++|..|...+. -++.++|+++
T Consensus        24 ~m~IgvIG~-G~mG~~lA~~L~~~G~-~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGF-GEAAQSIAGGLGGRNA-ARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC-SEEEEECGGG
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHcCC-CeEEEEeCCC
Confidence            479999998 9999999999999982 2899999974

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.70  E-value=0.048  Score=50.09  Aligned_cols=32  Identities=34%  Similarity=0.615  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.||..+|..|+. +  .+++++|+++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G--~~V~~~d~~~   32 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-Q--NEVTIVDILP   32 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-T--SEEEEECSCH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-C--CEEEEEECCH
Confidence            69999999 9999999999998 6  4899999976

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=93.69  E-value=0.06  Score=47.74  Aligned_cols=34  Identities=21%  Similarity=0.367  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+|||+ |++|.++|..|...+.  ++.++|.++
T Consensus        14 ~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~   47 (335)
T 1z82_A           14 EMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRK   47 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSH
T ss_pred             CCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCH
Confidence            479999999 9999999999998885  899999875

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=93.67  E-value=0.069  Score=46.44  Aligned_cols=34  Identities=26%  Similarity=0.329  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~   69 (248)
                      |||.|+||+|+||++++..|..+ +.  +++++|.+.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~   35 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGS   35 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCc
Confidence            58999999999999999999987 54  788888765

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=93.64  E-value=0.068  Score=42.35  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||+ |.+|..+|..|...+.  ++.|+|..+
T Consensus         2 ~~vvIIGg-G~~Gl~~A~~l~~~g~--~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGG-GPSGLSAALFLARAGL--KVLVLDGGR   34 (180)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECSC
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            48999999 9999999999999886  899999765

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=93.63  E-value=0.051  Score=47.48  Aligned_cols=38  Identities=24%  Similarity=0.478  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCC-----cceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPL-----VDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l-----~~elvLiDi~~   69 (248)
                      +.|||.|+||+|+||++++..|..++.     ..+++++|.+.
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~   55 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQ   55 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSC
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccC
Confidence            457999999999999999999998872     13788888764

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=93.58  E-value=0.064  Score=47.34  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=29.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+||+|+||++++..|..++.  +++++|.+.
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   35 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRA   35 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC--
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCC
Confidence            36899999999999999999999884  788888753

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=93.57  E-value=0.052  Score=46.39  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=28.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|++|++++..|. ++  .+++.+|.+.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g--~~V~~~~r~~   33 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PV--GNLIALDVHS   33 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TT--SEEEEECTTC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cC--CeEEEecccc
Confidence            589999999999999999998 76  3788887754

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=93.57  E-value=0.055  Score=46.75  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ++||.|+||+|+||++++..|..++.  ++++++.+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~   36 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTR   36 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecC
Confidence            47999999999999999999999875  67776643

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=93.55  E-value=0.095  Score=43.48  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.+++..|+.++.  +++++|.++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~   41 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTN   41 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            457999999999999999999999985  799999875

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=93.53  E-value=0.034  Score=50.20  Aligned_cols=37  Identities=11%  Similarity=0.195  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCC-----cceEEEEecCCc
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPL-----VDHLSLYDIVHT   70 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l-----~~elvLiDi~~a   70 (248)
                      ++||+|||+ |++|.++|..|+..+.     ..++.++|.++.
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            469999999 9999999999988761     137999998763

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=93.53  E-value=0.081  Score=50.19  Aligned_cols=42  Identities=17%  Similarity=0.196  Sum_probs=32.6

Q ss_pred             ccccccCCCcEEEEEcCCCccHHHHHHHHHh---CCCcceEEEEecCC
Q psy14621         25 HLSLYDINNAKVMVAGASGGIGQPLSLLLKQ---SPLVDHLSLYDIVH   69 (248)
Q Consensus        25 ~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~---~~l~~elvLiDi~~   69 (248)
                      +...+.++..+|+|||+ |-.|.++|+.|+.   .++  +++|+|..+
T Consensus        17 ~~~~M~~~~~dVvIVGg-G~aGl~aA~~La~~~~~G~--~V~liE~~~   61 (550)
T 2e4g_A           17 RGSHMSGKIDKILIVGG-GTAGWMAASYLGKALQGTA--DITLLQAPD   61 (550)
T ss_dssp             ----CCSCCCEEEEECC-SHHHHHHHHHHHHHTTTSS--EEEEEECCC
T ss_pred             CCcccCCCCCcEEEECC-CHHHHHHHHHHHhhcCCCC--cEEEEeCCC
Confidence            44444445679999999 9999999999999   776  899999764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=93.52  E-value=0.062  Score=46.84  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||+ |-+|.++|+.|+.++.  +++|+|..+
T Consensus         4 ~~dvvIIG~-G~~Gl~~A~~La~~G~--~V~vlE~~~   37 (369)
T 3dme_A            4 DIDCIVIGA-GVVGLAIARALAAGGH--EVLVAEAAE   37 (369)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             cCCEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCC
Confidence            358999999 9999999999999997  899999874

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=93.50  E-value=0.06  Score=47.68  Aligned_cols=33  Identities=27%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||| |-+|.++|+.|+.++.  +++|+|...
T Consensus         4 ~dvvIIGa-G~~Gl~~A~~La~~G~--~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (389)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CCEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCC
Confidence            58999999 9999999999999986  799999865

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=93.48  E-value=0.07  Score=46.64  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+||+|+||++++..|..++.-.+++++|.+.
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~   40 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT   40 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            5799999999999999999998873223788888753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.46  E-value=0.051  Score=43.59  Aligned_cols=35  Identities=23%  Similarity=0.196  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~   69 (248)
                      ..+||.|+|+ |.+|..+|..|... +.  +++++|.++
T Consensus        38 ~~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~   73 (183)
T 3c85_A           38 GHAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIRE   73 (183)
T ss_dssp             TTCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCH
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCH
Confidence            4569999998 99999999999987 75  799999986

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=93.46  E-value=0.081  Score=46.08  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=28.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhC---CCc-ceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQS---PLV-DHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~---~l~-~elvLiDi~   68 (248)
                      |||.|+||+|+||++++..|..+   +.. .+++++|.+
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~   39 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSL   39 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECC
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence            68999999999999999999885   410 378888874

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=93.45  E-value=0.051  Score=50.96  Aligned_cols=38  Identities=18%  Similarity=0.136  Sum_probs=33.2

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...++.||+|||. |.||..+|..++..+.  +++-+|+++
T Consensus        17 ~~~~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~   54 (444)
T 3vtf_A           17 RGSHMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNP   54 (444)
T ss_dssp             TTCCCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCH
T ss_pred             CCCCCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCH
Confidence            3346679999999 9999999999998886  899999986

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=93.44  E-value=0.085  Score=45.96  Aligned_cols=35  Identities=20%  Similarity=0.117  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+||+|+||++++..|..++.  +++.++.+.
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~   43 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDP   43 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCc
Confidence            46899999999999999999999885  677666543

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=93.43  E-value=0.079  Score=46.14  Aligned_cols=33  Identities=30%  Similarity=0.422  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      |||.|+||+|+||++++..|..++.  +++++|..
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~   33 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecC
Confidence            5899999999999999999999885  78888854

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.42  E-value=0.045  Score=47.22  Aligned_cols=34  Identities=21%  Similarity=0.393  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .+.+|+|||+ |..|.++|+.|...++  +++|+|..
T Consensus        21 ~~~~vvIIG~-G~aGl~aA~~l~~~g~--~v~vie~~   54 (338)
T 3itj_A           21 VHNKVTIIGS-GPAAHTAAIYLARAEI--KPILYEGM   54 (338)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             CCCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEecC
Confidence            3469999999 9999999999999987  79999984

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=93.42  E-value=0.084  Score=48.44  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=33.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+|+|||| |..|.++|..|...+...+++|+|...
T Consensus         5 ~~~dV~IIGa-G~aGl~aA~~L~~~G~~~~V~v~E~~~   41 (447)
T 2gv8_A            5 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   41 (447)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhcCCCCCeEEEecCC
Confidence            3469999999 999999999999999877899999864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=93.41  E-value=0.03  Score=43.43  Aligned_cols=34  Identities=9%  Similarity=0.221  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+|||+ |.+|..++..|...+. . +.++|.++
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~-~-v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY-K-VTVAGRNI   54 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC-E-EEEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC-E-EEEEcCCH
Confidence            569999998 9999999999988874 4 99999987

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=93.40  E-value=0.056  Score=46.12  Aligned_cols=34  Identities=18%  Similarity=0.213  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~   69 (248)
                      |||.|+||+|++|++++..|... +.  ++++++.++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~   35 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNV   35 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSG
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCH
Confidence            68999999999999999998887 43  688888765

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=93.39  E-value=0.069  Score=48.28  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |+|+|||| |..|.++|+.|+..+.  +++|+|.++
T Consensus         1 ~dVvVIGa-GiaGLsaA~~La~~G~--~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGA-GLGGLLAGAFLARNGH--EIIVLEKSA   33 (421)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-CHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            58999999 9999999999999985  899999875

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=93.38  E-value=0.037  Score=48.72  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=29.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++.+|+|||+ |-+|.++|+.|+ ++.  +++|+|.++
T Consensus         8 ~~~dv~IIGa-Gi~Gls~A~~La-~G~--~V~vlE~~~   41 (381)
T 3nyc_A            8 IEADYLVIGA-GIAGASTGYWLS-AHG--RVVVLEREA   41 (381)
T ss_dssp             EECSEEEECC-SHHHHHHHHHHT-TTS--CEEEECSSS
T ss_pred             CcCCEEEECC-cHHHHHHHHHHh-CCC--CEEEEECCC
Confidence            3569999999 999999999999 675  899999874

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=93.36  E-value=0.068  Score=46.98  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+||+|||+ |.+|..+|..|...+.  ++.++|+++
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~   42 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSP   42 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4579999999 9999999999999986  799999986

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=93.36  E-value=0.079  Score=46.29  Aligned_cols=33  Identities=30%  Similarity=0.343  Sum_probs=29.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +||.|+||+|+||++++..|..++.  +++++|.+
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~   35 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNF   35 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecC
Confidence            6899999999999999999999884  78888764

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=93.35  E-value=0.063  Score=45.26  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   49 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGS   49 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            446899999999999999999999985  799999876

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.34  E-value=0.065  Score=46.48  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+|+|||+ |..|.++|+.|...++  +++|+|..+
T Consensus         5 ~~~vvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~~   38 (335)
T 2zbw_A            5 HTDVLIVGA-GPTGLFAGFYVGMRGL--SFRFVDPLP   38 (335)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             cCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            468999999 9999999999999886  899999865

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=93.33  E-value=0.076  Score=47.35  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|+|||| |-.|.++|+.|...++  +++|+|..+
T Consensus        10 ~~~dVvIVGa-G~aGl~~A~~L~~~G~--~v~viE~~~   44 (379)
T 3alj_A           10 KTRRAEVAGG-GFAGLTAAIALKQNGW--DVRLHEKSS   44 (379)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEecCC
Confidence            3569999999 9999999999999986  899999765

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=93.31  E-value=0.055  Score=47.68  Aligned_cols=33  Identities=15%  Similarity=0.354  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||+ |-+|.++|+.|+.++.  +++|+|...
T Consensus         3 ~dvvIIG~-Gi~Gl~~A~~La~~G~--~V~vle~~~   35 (372)
T 2uzz_A            3 YDLIIIGS-GSVGAAAGYYATRAGL--NVLMTDAHM   35 (372)
T ss_dssp             EEEEESCT-THHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence            48999999 9999999999999986  799999865

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=93.31  E-value=0.042  Score=46.78  Aligned_cols=35  Identities=26%  Similarity=0.377  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++|.|+||+|+||.+++..|+.++.  +++++|.++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~   37 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSP   37 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCC
Confidence            45799999999999999999999874  799999876

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=93.30  E-value=0.42  Score=42.05  Aligned_cols=34  Identities=24%  Similarity=0.513  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.||++||. |..|..+|..|...+.  ++..+|+++
T Consensus         3 M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~   36 (300)
T 3obb_A            3 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQ   36 (300)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSH
T ss_pred             cCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCH
Confidence            569999999 9999999999999987  899999986

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=93.29  E-value=0.068  Score=46.97  Aligned_cols=33  Identities=18%  Similarity=0.300  Sum_probs=28.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~   68 (248)
                      |||.|+||+|+||++++..|..+ +.  +++++|.+
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~   34 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKL   34 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecC
Confidence            58999999999999999999886 43  78888864

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=93.26  E-value=0.088  Score=44.17  Aligned_cols=37  Identities=16%  Similarity=0.295  Sum_probs=32.5

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.++|.|+||+|.+|.+++..|+.++.  +++++|.+.
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~   48 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSA   48 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcc
Confidence            4556899999999999999999999985  899999865

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.25  E-value=0.044  Score=46.73  Aligned_cols=35  Identities=17%  Similarity=0.378  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||+ |++|..+|..|...+. +.+.++|.++
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~-~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF-RIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSH
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC-eEEEEEeCCH
Confidence            479999999 9999999999998874 3488999876

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=93.25  E-value=0.092  Score=46.69  Aligned_cols=34  Identities=15%  Similarity=0.102  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||.|+||+|+||++++..|..++.  +++++|.+.
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~   62 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRS   62 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCC
Confidence            5899999999999999999999884  788888764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=93.24  E-value=0.061  Score=48.32  Aligned_cols=33  Identities=24%  Similarity=0.403  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||| |-.|.++|+.|+.+++  +++|+|...
T Consensus         6 ~dVvIIGg-G~aGl~~A~~La~~G~--~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGA-GPAGTVAASLVNKSGF--KVKIVEKQK   38 (421)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSC
T ss_pred             CcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            68999999 9999999999999997  899999865

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.24  E-value=0.12  Score=44.34  Aligned_cols=43  Identities=12%  Similarity=0.184  Sum_probs=36.3

Q ss_pred             ccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         25 HLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        25 ~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .|.....+.+++.|+|++|.||.++|..|+.++.  +++++|.+.
T Consensus        19 ~~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~   61 (277)
T 4fc7_A           19 LFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSL   61 (277)
T ss_dssp             SBCTTTTTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCH
T ss_pred             CCCccccCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3544445667899999999999999999999986  899999876

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=93.19  E-value=0.063  Score=47.56  Aligned_cols=34  Identities=15%  Similarity=0.304  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||+ |-+|.++|+.|+.++.  +++|+|...
T Consensus         5 ~~dVvIIGg-Gi~Gl~~A~~La~~G~--~V~lle~~~   38 (382)
T 1y56_B            5 KSEIVVIGG-GIVGVTIAHELAKRGE--EVTVIEKRF   38 (382)
T ss_dssp             BCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            358999999 9999999999999986  799999865

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=93.14  E-value=0.19  Score=42.09  Aligned_cols=37  Identities=32%  Similarity=0.427  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.+|.++|..|+.++. ..++++|.++
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~~v~~~~r~~   40 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVE   40 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEecCc
Confidence            456899999999999999999999984 3488999876

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=93.14  E-value=0.074  Score=46.41  Aligned_cols=36  Identities=28%  Similarity=0.195  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+||+|+||++++..|..++.  +++.++.+.
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~   39 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDP   39 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCT
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            456999999999999999999999885  677666654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.08  E-value=0.083  Score=44.88  Aligned_cols=34  Identities=15%  Similarity=0.047  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||.|+|| |+||++++..|..++.  +++.++.++
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~   38 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNP   38 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCG
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcCh
Confidence            479999998 9999999999999885  788888865

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=93.08  E-value=0.071  Score=48.86  Aligned_cols=33  Identities=27%  Similarity=0.521  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|.|||| |-+|.++|+.|+..++  +++|+|...
T Consensus        23 ~~ViIVGa-GpaGl~~A~~La~~G~--~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGA-GTAGLHLGLFLRQHDV--DVTVYTDRK   55 (430)
T ss_dssp             CEEEEECC-HHHHHHHHHHHHHTTC--EEEEEESCC
T ss_pred             CCEEEECC-cHHHHHHHHHHHHCCC--eEEEEcCCC
Confidence            48999999 9999999999999997  899999765

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=93.06  E-value=0.07  Score=46.82  Aligned_cols=32  Identities=19%  Similarity=0.206  Sum_probs=29.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -|+|||| |-.|.++|+.|+.+|+  +++|+|..+
T Consensus         6 DViIVGa-GpaGl~~A~~La~~G~--~V~v~Er~~   37 (397)
T 3oz2_A            6 DVLVVGG-GPGGSTAARYAAKYGL--KTLMIEKRP   37 (397)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999999 9999999999999998  899999754

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=93.05  E-value=0.074  Score=45.16  Aligned_cols=31  Identities=19%  Similarity=0.176  Sum_probs=28.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      |||+|||+ |++|.++|..|...+.  ++.++|.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~   31 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLE   31 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCT
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCC
Confidence            58999999 9999999999998885  7888887

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=93.05  E-value=0.085  Score=46.58  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=28.7

Q ss_pred             cccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         28 LYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        28 ~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ......+||+|||+ |.+|.++|..|+..+.  ++.|+ .++
T Consensus        14 ~~~~~~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~   51 (318)
T 3hwr_A           14 NLYFQGMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARP   51 (318)
T ss_dssp             ------CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCH
T ss_pred             hhhccCCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcH
Confidence            34456789999999 9999999999999885  88888 654

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=93.03  E-value=0.07  Score=52.90  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+||+|||+ |.+|..+|..++..+.  +++++|+++
T Consensus       311 ~~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~  345 (725)
T 2wtb_A          311 KIKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNE  345 (725)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSH
T ss_pred             cCcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCH
Confidence            3569999999 9999999999999987  899999987

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=93.03  E-value=0.1  Score=46.23  Aligned_cols=34  Identities=15%  Similarity=0.131  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||.|+||+|+||.+++..|..++.  +++++|.+.
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   58 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRS   58 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCc
Confidence            5899999999999999999999884  788888764

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=93.02  E-value=0.074  Score=46.70  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||| |..|.++|+.|...+.. +++|+|..+
T Consensus         4 ~~~vvIIGa-G~aGl~aA~~l~~~g~~-~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGA-GAAGIGMAITLKDFGIT-DVIILEKGT   38 (369)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTCC-CEEEECSSS
T ss_pred             cCcEEEECc-CHHHHHHHHHHHHcCCC-cEEEEecCC
Confidence            358999999 99999999999998853 799999764

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=92.99  E-value=0.074  Score=44.68  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=28.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|++|.+++..|.. +  .+++++|.++
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g--~~V~~~~r~~   33 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-R--HEVIKVYNSS   33 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-T--SCEEEEESSS
T ss_pred             CEEEEECCCChhHHHHHHHHhc-C--CeEEEecCCC
Confidence            5899999999999999999984 5  4788888765

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=92.98  E-value=0.093  Score=44.29  Aligned_cols=33  Identities=21%  Similarity=0.255  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||+ |..|.++|..|...++  +++|+|...
T Consensus         3 ~~vvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~~   35 (297)
T 3fbs_A            3 FDVIIIGG-SYAGLSAALQLGRARK--NILLVDAGE   35 (297)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCC
T ss_pred             CCEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            58999999 9999999999999986  899999643

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=92.97  E-value=0.07  Score=47.78  Aligned_cols=34  Identities=21%  Similarity=0.319  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||| |-.|.++|+.|+..++  +++|+|..+
T Consensus         6 ~~dVvIVGa-G~aGl~~A~~L~~~G~--~V~viE~~~   39 (399)
T 2x3n_A            6 HIDVLINGC-GIGGAMLAYLLGRQGH--RVVVVEQAR   39 (399)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             cCCEEEECc-CHHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            368999999 9999999999999987  799999765

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.94  E-value=0.097  Score=43.27  Aligned_cols=38  Identities=26%  Similarity=0.283  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.+++..|+.++-..+++++|.+.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~   39 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV   39 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCH
Confidence            34689999999999999999999988323899999876

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=92.94  E-value=0.065  Score=47.04  Aligned_cols=36  Identities=17%  Similarity=0.155  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCC---cceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPL---VDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l---~~elvLiDi~~   69 (248)
                      +||.|+||+|+||++++..|..++-   ..+++.+|.+.
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~   40 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRT   40 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCC
Confidence            6899999999999999999998871   12788888764

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=92.93  E-value=0.15  Score=42.71  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   47 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDE   47 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  899999876

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=92.91  E-value=0.097  Score=46.73  Aligned_cols=36  Identities=19%  Similarity=0.190  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+||+|++|.+++..|..++.  +++.++.+.
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~   39 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSL   39 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCC
Confidence            357899999999999999999998874  788888776

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=92.91  E-value=0.077  Score=45.33  Aligned_cols=39  Identities=18%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+.++|.|+||+|.||.++|..|+.++.  +++++|.++
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   61 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGH--RVIISYRTE   61 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            334456899999999999999999999985  799999987

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=92.90  E-value=0.088  Score=47.01  Aligned_cols=33  Identities=15%  Similarity=0.247  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|+|||| |-+|.++|+.|+.++.  +++|+|...
T Consensus         5 ~DVvIIGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGG-GPVGLATAWQVAERGH--RVLVLERHT   37 (397)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            58999999 9999999999999986  799999865

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=92.88  E-value=0.12  Score=44.34  Aligned_cols=35  Identities=31%  Similarity=0.569  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|+|+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        28 ~~~VlvvG~-GglG~~va~~La~~Gv-g~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGL-GGLGTPAALYLAGAGV-GTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTC-SEEEEECCCB
T ss_pred             cCcEEEEcc-CHHHHHHHHHHHHcCC-CeEEEEeCCC
Confidence            469999999 9999999999999995 6899998753

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=92.86  E-value=0.076  Score=45.17  Aligned_cols=28  Identities=18%  Similarity=0.463  Sum_probs=25.2

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPL   58 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l   58 (248)
                      .+++||.|+||+|+||++++..|..++.
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~   31 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG   31 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence            4678999999999999999999999874

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=92.84  E-value=0.085  Score=47.35  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+|||+ |.-|.++|..|...+.--+|+|||.++
T Consensus         2 GKkVvIIG~-G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cCEEEEECC-cHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            359999999 999999999988766545899999875

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=92.82  E-value=0.076  Score=50.24  Aligned_cols=39  Identities=15%  Similarity=0.240  Sum_probs=32.8

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCc--ceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLV--DHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~--~elvLiDi~~   69 (248)
                      -.-++||.|||| |.||+.+|..|++++-+  .+++++|...
T Consensus        10 ~~~~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~   50 (480)
T 2ph5_A           10 ILFKNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEG   50 (480)
T ss_dssp             BCCCSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSC
T ss_pred             ecCCCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccch
Confidence            334579999998 99999999999987633  6899999876

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=92.82  E-value=0.066  Score=46.36  Aligned_cols=33  Identities=27%  Similarity=0.418  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||+ |..|.++|+.|..+++  +++|+|..+
T Consensus         4 ~~vvIIG~-G~aGl~~A~~l~~~g~--~v~vie~~~   36 (357)
T 4a9w_A            4 VDVVVIGG-GQSGLSAGYFLRRSGL--SYVILDAEA   36 (357)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHSSC--CEEEECCSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCC
Confidence            58999999 9999999999999987  799999875

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=92.81  E-value=0.069  Score=46.08  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSP   57 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~   57 (248)
                      |+||.|+||+|+||++++..|..++
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g   25 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN   25 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC
Confidence            3589999999999999999999988

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=92.80  E-value=0.15  Score=42.88  Aligned_cols=37  Identities=16%  Similarity=0.291  Sum_probs=32.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.++|.|+||+|.+|.+++..|+.++.  +++++|.+.
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~   46 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPN   46 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTT
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            3456899999999999999999999985  799999886

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=92.79  E-value=0.1  Score=44.73  Aligned_cols=36  Identities=17%  Similarity=0.164  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++|.|+||+|++|.+++..|..++- .+++.++.++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~~V~~~~R~~   40 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGT-FKVRVVTRNP   40 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCS-SEEEEEESCT
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCC-ceEEEEEcCC
Confidence            46899999999999999999988762 3788998876

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=92.79  E-value=0.052  Score=46.17  Aligned_cols=34  Identities=24%  Similarity=0.437  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|+||++++..|..++.  +++.+|..+
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   39 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL   39 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc
Confidence            4899999999999999999999884  788887643

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=92.78  E-value=0.089  Score=47.27  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |+|+|||| |..|.++|+.|+.++.  +++|+|...
T Consensus         1 ~dVvVIGa-GiaGLsaA~~La~~G~--~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGA-GLGGLLSAARLSKAGH--EVEVFERLP   33 (425)
T ss_dssp             CEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-CHHHHHHHHHHHhCCC--ceEEEeCCC
Confidence            58999999 9999999999999985  899999876

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=92.76  E-value=0.11  Score=44.71  Aligned_cols=32  Identities=19%  Similarity=0.180  Sum_probs=27.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      +||.|+||+|+||++++..|..++.  +++.++.
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r   33 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIR   33 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECC
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEe
Confidence            5899999999999999999999885  6777665

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.74  E-value=0.18  Score=43.27  Aligned_cols=38  Identities=13%  Similarity=0.256  Sum_probs=33.3

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+.++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~   60 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKM   60 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            34557899999999999999999999985  799999876

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=92.74  E-value=0.1  Score=47.84  Aligned_cols=36  Identities=31%  Similarity=0.428  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCc-ceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLV-DHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~-~elvLiDi~~   69 (248)
                      ++||.|+|| |.+|..++..|+..+-+ .++++.|.+.
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~   37 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTL   37 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCH
Confidence            369999999 99999999999998744 6899999986

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=92.73  E-value=0.11  Score=43.72  Aligned_cols=40  Identities=20%  Similarity=0.240  Sum_probs=32.6

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCc-ceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLV-DHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~-~elvLiDi~~   69 (248)
                      ..++++|.|+||+|.+|.++|..|+.++-- .+++++|.+.
T Consensus        18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~   58 (267)
T 1sny_A           18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNR   58 (267)
T ss_dssp             --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCT
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecCh
Confidence            345578999999999999999999998721 3799999886

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=92.72  E-value=0.14  Score=43.97  Aligned_cols=38  Identities=26%  Similarity=0.348  Sum_probs=32.0

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        41 ~l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~   78 (285)
T 2c07_A           41 CGENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQ   78 (285)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCH
Confidence            33456899999999999999999999884  788888765

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=92.72  E-value=0.12  Score=43.30  Aligned_cols=42  Identities=21%  Similarity=0.373  Sum_probs=34.8

Q ss_pred             cccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ......+.++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus         7 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~   48 (249)
T 3f9i_A            7 HHMIDLTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNE   48 (249)
T ss_dssp             --CCCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             cccccCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            344455667999999999999999999999985  799999876

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=92.70  E-value=0.16  Score=42.39  Aligned_cols=36  Identities=31%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~   45 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA--RLILIDREA   45 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=92.67  E-value=0.073  Score=47.36  Aligned_cols=35  Identities=14%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHh-CC-CcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQ-SP-LVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~-~~-l~~elvLiDi~~   69 (248)
                      ...+|+|||+ |-.|.++|+.|+. ++ .  +++|+|...
T Consensus        20 ~~~dVvIIG~-G~~Gl~~A~~La~~~G~~--~V~vlE~~~   56 (405)
T 2gag_B           20 KSYDAIIVGG-GGHGLATAYFLAKNHGIT--NVAVLEKGW   56 (405)
T ss_dssp             SEEEEEEECC-SHHHHHHHHHHHHHHCCC--CEEEECSSS
T ss_pred             CcCCEEEECc-CHHHHHHHHHHHHhcCCC--cEEEEeCCC
Confidence            3469999999 9999999999999 87 5  799999876

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=92.65  E-value=0.15  Score=43.98  Aligned_cols=42  Identities=21%  Similarity=0.393  Sum_probs=34.6

Q ss_pred             cccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |..+..+.++|.|+||+|.||.++|..|+.++.  +++++|.++
T Consensus        20 ~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~   61 (277)
T 4dqx_A           20 FQSMDLNQRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNE   61 (277)
T ss_dssp             --CCTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             cccCCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            444455567899999999999999999999986  799999876

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.60  E-value=0.087  Score=49.87  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++||+|||+ |.+|.++|..|+..+.  +++++|+++
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~   37 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTV   37 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSST
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4579999999 9999999999999986  899999987

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=92.58  E-value=0.11  Score=42.84  Aligned_cols=34  Identities=24%  Similarity=0.491  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.+++..|+.++.  +++++|.++
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~   36 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   36 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCc
Confidence            5899999999999999999999885  799999865

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.57  E-value=0.12  Score=42.95  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~   37 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSA   37 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCc
Confidence            45899999999999999999999985  799999876

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=92.56  E-value=0.16  Score=42.95  Aligned_cols=37  Identities=22%  Similarity=0.485  Sum_probs=32.5

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus        14 l~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~   50 (278)
T 2bgk_A           14 LQDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIAD   50 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCh
Confidence            3456899999999999999999999985  799999875

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=92.56  E-value=0.052  Score=49.53  Aligned_cols=32  Identities=25%  Similarity=0.268  Sum_probs=29.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCC-CcceEEEEec
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSP-LVDHLSLYDI   67 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~-l~~elvLiDi   67 (248)
                      ..+|+|||+ |-+|.++|+.|+.++ .  +++|+|.
T Consensus        23 ~~dVvIIGg-GiaGls~A~~La~~G~~--~V~vlE~   55 (448)
T 3axb_A           23 RFDYVVVGA-GVVGLAAAYYLKVWSGG--SVLVVDA   55 (448)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHHHCS--CEEEEES
T ss_pred             cCCEEEECc-CHHHHHHHHHHHhCCCC--cEEEEcc
Confidence            458999999 999999999999987 5  8999998

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=92.55  E-value=0.13  Score=42.90  Aligned_cols=36  Identities=19%  Similarity=0.421  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.+++..|+.++.  +++++|.+.
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~   45 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINA   45 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            457899999999999999999999985  799999876

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=92.55  E-value=0.11  Score=46.92  Aligned_cols=34  Identities=26%  Similarity=0.391  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcce-EEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDH-LSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~e-lvLiDi~~   69 (248)
                      ..+|+|||| |-.|.++|..|+..++  + ++|+|..+
T Consensus         4 ~~dVvIVGa-G~aGl~~A~~L~~~G~--~~v~v~E~~~   38 (410)
T 3c96_A            4 PIDILIAGA-GIGGLSCALALHQAGI--GKVTLLESSS   38 (410)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--SEEEEEESSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC--CeEEEEECCC
Confidence            468999999 9999999999999986  6 99999865

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.55  E-value=0.2  Score=42.70  Aligned_cols=36  Identities=31%  Similarity=0.378  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.||.++|..|+.++.  +++++|.+.
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~   66 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTV   66 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCh
Confidence            456899999999999999999999985  799999876

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.54  E-value=0.074  Score=48.31  Aligned_cols=31  Identities=26%  Similarity=0.322  Sum_probs=27.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEe
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYD   66 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiD   66 (248)
                      +|||+|||+ |.+|.++|..|+.. +.  ++.++|
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~   33 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLT   33 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEEC
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEe
Confidence            379999999 99999999999874 64  899999

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=92.52  E-value=0.14  Score=42.80  Aligned_cols=34  Identities=21%  Similarity=0.375  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.||.++|..|+.++.  +++++|.++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~   35 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            4799999999999999999999985  799999876

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=92.51  E-value=0.079  Score=46.94  Aligned_cols=35  Identities=26%  Similarity=0.494  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        36 ~~~VlVvGa-GGlGs~va~~La~aGV-G~i~lvD~D~   70 (292)
T 3h8v_A           36 TFAVAIVGV-GGVGSVTAEMLTRCGI-GKLLLFDYDK   70 (292)
T ss_dssp             GCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCCc
Confidence            459999999 9999999999999985 7999999765

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=92.51  E-value=0.096  Score=47.25  Aligned_cols=33  Identities=21%  Similarity=0.188  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHh---CCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQ---SPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~---~~l~~elvLiDi~~   69 (248)
                      ++|+|||+ |..|.++|..|..   .+.  ++.|+|.++
T Consensus         2 ~~VvIIGg-G~aGl~aA~~L~~~~~~g~--~V~vie~~~   37 (409)
T 3h8l_A            2 TKVLVLGG-RFGALTAAYTLKRLVGSKA--DVKVINKSR   37 (409)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHHGGGS--EEEEEESSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhhCCCCC--eEEEEeCCC
Confidence            58999999 9999999999998   554  899999876

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=92.51  E-value=0.16  Score=42.89  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        18 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~   53 (249)
T 1o5i_A           18 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNE   53 (249)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            456899999999999999999999985  799999875

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=92.50  E-value=0.072  Score=45.72  Aligned_cols=34  Identities=29%  Similarity=0.463  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhC--CCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQS--PLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~--~l~~elvLiDi~~   69 (248)
                      +||.|+||+|+||++++..|..+  +.  +++++|.+.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~   38 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRK   38 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCC
Confidence            68999999999999999999887  43  688888765

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=92.49  E-value=0.15  Score=42.66  Aligned_cols=36  Identities=31%  Similarity=0.423  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~   43 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINA   43 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            456899999999999999999999985  799999876

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=92.48  E-value=0.16  Score=42.42  Aligned_cols=36  Identities=19%  Similarity=0.382  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.||.++|..|+.++.  +++++|.++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   41 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVE   41 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCh
Confidence            346899999999999999999999985  799999876

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.48  E-value=0.098  Score=46.80  Aligned_cols=35  Identities=23%  Similarity=0.234  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||+|||+ |.+|.++|..|...+.  +++++|.++
T Consensus        15 ~~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~   49 (338)
T 1np3_A           15 QGKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSG   49 (338)
T ss_dssp             HTSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTT
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECCh
Confidence            4579999998 9999999999999885  788999876

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=92.48  E-value=0.082  Score=46.95  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      |||.|+||+|++|++++..|..++.+ +++.+|+
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~   33 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHR   33 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECC
Confidence            69999999999999999999988743 7899998

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=92.47  E-value=0.11  Score=45.59  Aligned_cols=33  Identities=21%  Similarity=0.498  Sum_probs=27.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||++||. |+.|..+|..|...+.  +++.+|+++
T Consensus         6 ~kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~   38 (297)
T 4gbj_A            6 EKIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTA   38 (297)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEC----
T ss_pred             CcEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            38999999 9999999999999997  899999987

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=92.44  E-value=0.11  Score=44.17  Aligned_cols=35  Identities=17%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   55 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSG   55 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            46899999999999999999999985  789999875

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=92.42  E-value=0.18  Score=42.66  Aligned_cols=45  Identities=20%  Similarity=0.177  Sum_probs=36.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.+.  ++..+.++.
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~   52 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIE   52 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            456899999999999999999999986  799999987  344444443

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=92.42  E-value=0.12  Score=47.31  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=31.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|+|||| |-.|.++|+.|...+...+++|+|-.+
T Consensus         3 ~dVvVIGa-GiaGLsaA~~L~~~G~~~~V~vlEa~~   37 (477)
T 3nks_A            3 RTVVVLGG-GISGLAASYHLSRAPCPPKVVLVESSE   37 (477)
T ss_dssp             CEEEEECC-BHHHHHHHHHHHTSSSCCEEEEECSSS
T ss_pred             ceEEEECC-cHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            58999999 999999999999998644899999865

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=92.38  E-value=0.094  Score=46.91  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhC--CCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQS--PLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~--~l~~elvLiDi~~   69 (248)
                      ++|+|||| |-.|.++|+.|+..  ++  +++|+|.++
T Consensus         1 ~dV~IVGa-G~aGl~~A~~L~~~~~G~--~V~v~E~~~   35 (381)
T 3c4a_A            1 MKILVIGA-GPAGLVFASQLKQARPLW--AIDIVEKND   35 (381)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTS--EEEEECSSC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCC--CEEEEECCC
Confidence            48999999 99999999999998  76  899999865

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=92.37  E-value=0.18  Score=41.86  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.+++..|+.++.  +++++|.++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~   41 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQ   41 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999875

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=92.36  E-value=0.11  Score=46.92  Aligned_cols=34  Identities=24%  Similarity=0.214  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+|||+ |.+|.++|..|...+.  ++.++|.++
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCH
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            469999998 9999999999999884  899999886

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=92.34  E-value=0.13  Score=42.42  Aligned_cols=35  Identities=29%  Similarity=0.440  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+||+|.+|.+++..|+.++.  +++++|.+.
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~   39 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY--RVGLMARDE   39 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            35799999999999999999999985  799999875

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=92.33  E-value=0.18  Score=42.94  Aligned_cols=37  Identities=27%  Similarity=0.454  Sum_probs=32.7

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~   65 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINK   65 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCH
Confidence            3457899999999999999999999985  799999876

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=92.33  E-value=0.19  Score=43.24  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=32.7

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~   52 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKL   52 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3457899999999999999999999985  799999876

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=92.33  E-value=0.1  Score=49.25  Aligned_cols=35  Identities=11%  Similarity=0.180  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++||+|||+ |+-|.++|..|...+.  +|+|||.++
T Consensus        41 ~KprVVIIGg-G~AGl~~A~~L~~~~~--~VtLId~~~   75 (502)
T 4g6h_A           41 DKPNVLILGS-GWGAISFLKHIDTKKY--NVSIISPRS   75 (502)
T ss_dssp             SSCEEEEECS-SHHHHHHHHHSCTTTC--EEEEEESSS
T ss_pred             CCCCEEEECC-cHHHHHHHHHhhhCCC--cEEEECCCC
Confidence            4569999999 9999999999987765  899999875

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=92.31  E-value=0.17  Score=45.82  Aligned_cols=41  Identities=22%  Similarity=0.320  Sum_probs=34.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhh
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAAD   76 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~D   76 (248)
                      .++|+|||| |..|.++|+.|...+.  ++.++|... .-|.+..
T Consensus         3 ~~~v~iiG~-G~~Gl~~A~~l~~~g~--~v~v~E~~~~~GG~~~~   44 (384)
T 2bi7_A            3 SKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDHIGGNSYD   44 (384)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSSSSGGGCE
T ss_pred             cCCEEEECc-CHHHHHHHHHHHHCCC--cEEEEEecCCcCCcccc
Confidence            479999999 9999999999999875  899999877 5555543

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=92.27  E-value=0.094  Score=49.41  Aligned_cols=37  Identities=16%  Similarity=0.373  Sum_probs=31.3

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++++||+|||+ |.+|.++|..|+..+.  ++.++|.++
T Consensus        12 ~~~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~   48 (480)
T 2zyd_A           12 HMSKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSR   48 (480)
T ss_dssp             ---CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSH
T ss_pred             ccCCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCH
Confidence            345679999999 9999999999999986  799999876

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=92.25  E-value=0.11  Score=46.92  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=31.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|+|||+ |..|.++|..|...+.-.+++|+|..+
T Consensus         2 k~vvIIGa-G~aGl~aA~~L~~~g~~~~V~lie~~~   36 (404)
T 3fg2_P            2 DTVLIAGA-GHAGFQVAVSLRQAKYPGRIALINDEK   36 (404)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCSCEEEECCSS
T ss_pred             CCEEEEcC-hHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence            58999999 999999999999998766899999865

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=92.25  E-value=0.069  Score=45.34  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=29.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhC--CCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQS--PLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~--~l~~elvLiDi~~   69 (248)
                      +||.|+||+|++|++++..|..+  +.  +++.+|.++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~   36 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNV   36 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCT
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCH
Confidence            47999999999999999999987  53  788888865

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=92.25  E-value=0.13  Score=42.90  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.++|.|+||+|.+|.+++..|+.++.  +++++|.+
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~   40 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA--KVGLHGRK   40 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCC
Confidence            456899999999999999999999985  79999987

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.22  E-value=0.1  Score=45.12  Aligned_cols=35  Identities=20%  Similarity=0.394  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||+|||+ |.+|.+++..|...+.  ++.++|.+.
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~  162 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTK  162 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCH
Confidence            3469999998 9999999999999885  899999875

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=92.21  E-value=0.21  Score=42.40  Aligned_cols=36  Identities=25%  Similarity=0.487  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   47 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSS   47 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=92.19  E-value=0.14  Score=48.29  Aligned_cols=34  Identities=15%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHh---CCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQ---SPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~---~~l~~elvLiDi~~   69 (248)
                      ..+|+|||| |-+|.++|+.|+.   .++  +++|+|...
T Consensus         5 ~~dVvIVGg-G~aGl~aA~~La~~~~~G~--~V~liE~~~   41 (538)
T 2aqj_A            5 IKNIVIVGG-GTAGWMAASYLVRALQQQA--NITLIESAA   41 (538)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCCSSC--EEEEEECSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhhcCCCC--EEEEECCCC
Confidence            469999999 9999999999999   886  899999855

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=92.18  E-value=0.17  Score=43.36  Aligned_cols=56  Identities=14%  Similarity=0.234  Sum_probs=41.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC-CCeEEEE
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES-KAHVQAF   89 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~-~~~v~~~   89 (248)
                      +.++|.|+||+|.||.++|..|+.++.  +++++|.++  .+..+.++..... ..++..+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~   68 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYE   68 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence            456899999999999999999999986  799999887  4445556654332 2255544

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=92.16  E-value=0.12  Score=47.85  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=29.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||| |..|.++|+.|...+.--+++|+|.++
T Consensus         3 ~~~VvIIGa-G~aGl~aA~~L~~~~~g~~Vtvie~~~   38 (472)
T 3iwa_A            3 LKHVVVIGA-VALGPKAACRFKRLDPEAHVTMIDQAS   38 (472)
T ss_dssp             -CEEEEECC-SSHHHHHHHHHHHHCTTSEEEEECCC-
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCcCCCEEEEECCC
Confidence            469999999 999999999999873334899999876

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=92.15  E-value=0.19  Score=42.09  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~   41 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDR   41 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            346899999999999999999999985  799999876

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=92.15  E-value=0.1  Score=45.62  Aligned_cols=41  Identities=24%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++++||+|+||+|++|..++-.+...+-+.=+..+|.+.
T Consensus         3 ~~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~   43 (272)
T 4f3y_A            3 GSMSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTG   43 (272)
T ss_dssp             ---CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTT
T ss_pred             CCccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecC
Confidence            34667899999977999999999988876554344578764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.14  E-value=0.33  Score=40.98  Aligned_cols=36  Identities=14%  Similarity=0.158  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCc--cHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGG--IGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~--VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|+  ||.++|..|+.++.  +++++|.++
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~   43 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGE   43 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSG
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCch
Confidence            4568999999988  99999999999986  789999876

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=92.11  E-value=0.15  Score=46.32  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=35.7

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhh
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAAD   76 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~D   76 (248)
                      +.++.||+||||+|.+|..+.-+|...+.+ ||+++.-....|..++
T Consensus        10 ~~~~~~V~IvGAtG~vG~ellrlL~~hP~~-el~~l~S~~~aG~~~~   55 (351)
T 1vkn_A           10 HHHMIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLE   55 (351)
T ss_dssp             --CCEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHH
T ss_pred             ccceeEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEeCcccccCChH
Confidence            346789999999999999999999999865 7888876544455444

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=92.10  E-value=0.15  Score=43.65  Aligned_cols=47  Identities=23%  Similarity=0.397  Sum_probs=32.8

Q ss_pred             ccccccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         21 PLVDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        21 ~~~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..++......+.++|.|+||+|.||.++|..|+.++.  ++++.|...
T Consensus        16 ~~~~~m~~~~l~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~   62 (269)
T 4dmm_A           16 PRGSHMTALPLTDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASS   62 (269)
T ss_dssp             --------CTTTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CccccccccCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            33444444445567899999999999999999999985  788888854

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=92.07  E-value=0.087  Score=48.60  Aligned_cols=34  Identities=24%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.||+|||| |.-|.++|+.|+..|.  ++.+++.+.
T Consensus         1 Mk~VvVIGa-G~~GL~aA~~La~~G~--~V~VlEa~~   34 (501)
T 4dgk_A            1 MKPTTVIGA-GFGGLALAIRLQAAGI--PVLLLEQRD   34 (501)
T ss_dssp             CCCEEEECC-HHHHHHHHHHHHHTTC--CEEEECCC-
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHCCC--cEEEEccCC
Confidence            469999999 9999999999999997  889998876

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=92.06  E-value=0.18  Score=42.54  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=31.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~   56 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRE   56 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            5799999999999999999999985  799999887

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=92.04  E-value=0.14  Score=46.25  Aligned_cols=36  Identities=28%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|||| |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        33 ~~~~VlIvGa-GGlGs~va~~La~aGV-g~ItlvD~D~   68 (340)
T 3rui_A           33 KNTKVLLLGA-GTLGCYVSRALIAWGV-RKITFVDNGT   68 (340)
T ss_dssp             HTCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCCB
T ss_pred             hCCEEEEECC-CHHHHHHHHHHHHcCC-CEEEEecCCE
Confidence            4569999999 9999999999999995 7999999754

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.98  E-value=0.088  Score=52.08  Aligned_cols=35  Identities=20%  Similarity=0.237  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+||+|||+ |.+|..+|..++..+.  +++++|+++
T Consensus       313 ~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~  347 (715)
T 1wdk_A          313 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINE  347 (715)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSH
T ss_pred             cCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCH
Confidence            4569999999 9999999999999987  899999987

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=91.96  E-value=0.073  Score=48.28  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCC----cceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPL----VDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l----~~elvLiDi~~   69 (248)
                      +.+|+|||| |-.|.++|+.|...+.    --+++|+|..+
T Consensus         5 ~~dVvIIGa-GiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~   44 (470)
T 3i6d_A            5 KKHVVIIGG-GITGLAAAFYMEKEIKEKNLPLELTLVEASP   44 (470)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHTTTTCSEEEEEECSSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHhccccCCCCCEEEEECCC
Confidence            468999999 9999999999999871    12899999875

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=91.96  E-value=0.21  Score=42.14  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRP   40 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESST
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            346899999999999999999999985  799999876

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=91.95  E-value=0.11  Score=48.80  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||+ |.+|.++|..|+..+.  ++.++|+++
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTV   35 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSST
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCH
Confidence            68999999 9999999999999886  799999976

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=91.95  E-value=0.22  Score=41.84  Aligned_cols=36  Identities=25%  Similarity=0.395  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~   41 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAF   41 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCch
Confidence            456899999999999999999999985  799999875

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=91.94  E-value=0.18  Score=42.13  Aligned_cols=35  Identities=23%  Similarity=0.390  Sum_probs=31.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~   37 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRY   37 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            45799999999999999999999985  799999986

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=91.94  E-value=0.11  Score=41.80  Aligned_cols=32  Identities=31%  Similarity=0.514  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.+++..|+.+    +++++|.++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~   32 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRA   32 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCH
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCH
Confidence            47999999999999999999988    899999876

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=91.91  E-value=0.14  Score=48.06  Aligned_cols=34  Identities=21%  Similarity=0.311  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|.|||| |-+|.++|+.|+.+++  +++|+|...
T Consensus         5 ~~dVlIVGa-G~aGl~~A~~La~~G~--~v~viEr~~   38 (535)
T 3ihg_A            5 EVDVLVVGA-GLGGLSTAMFLARQGV--RVLVVERRP   38 (535)
T ss_dssp             SEEEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             cCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            469999999 9999999999999997  799999865

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=91.90  E-value=0.16  Score=46.05  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|+|||+ |..|.++|..|...+.-.+++|+|..+
T Consensus         3 ~~vvIIGa-G~AGl~aA~~L~~~g~~~~V~li~~~~   37 (410)
T 3ef6_A            3 THVAIIGN-GVGGFTTAQALRAEGFEGRISLIGDEP   37 (410)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEEECSS
T ss_pred             CCEEEEcc-cHHHHHHHHHHHccCcCCeEEEEECCC
Confidence            48999999 999999999999999866899999865

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=91.87  E-value=0.16  Score=47.52  Aligned_cols=35  Identities=11%  Similarity=0.128  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+|+|||+ |.+|..+|..|+..+.  +++++|+++
T Consensus         7 ~~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~   41 (446)
T 4a7p_A            7 GSVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDA   41 (446)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCS
T ss_pred             CceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4679999999 9999999999999986  899999987

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=91.85  E-value=0.19  Score=41.59  Aligned_cols=43  Identities=26%  Similarity=0.328  Sum_probs=34.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhh
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADL   77 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL   77 (248)
                      +++|.|+|++|.+|.++|..|+.++.  +++++|.+.  .+..+.++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~   46 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHEL   46 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHH
Confidence            35789999999999999999999985  699999876  33334444

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=91.85  E-value=0.13  Score=47.09  Aligned_cols=37  Identities=16%  Similarity=0.262  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||+|||+ |..|.++|+.|...+.--+++|+|..+
T Consensus         2 ~~~~VvIIGg-G~aGl~aA~~L~~~~~~~~V~vie~~~   38 (449)
T 3kd9_A            2 SLKKVVIIGG-GAAGMSAASRVKRLKPEWDVKVFEATE   38 (449)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHhCcCCCEEEEECCC
Confidence            3579999999 999999999999874444899999876

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=91.85  E-value=0.12  Score=46.56  Aligned_cols=33  Identities=18%  Similarity=0.113  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||| |..|.++|+.|++.+.  +++|+|..+
T Consensus         2 ~dVvVIGa-G~aGl~aA~~L~~~G~--~V~vlE~~~   34 (431)
T 3k7m_X            2 YDAIVVGG-GFSGLKAARDLTNAGK--KVLLLEGGE   34 (431)
T ss_dssp             EEEEEECC-BHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHHcCC--eEEEEecCC
Confidence            58999999 9999999999999987  899999755

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=91.84  E-value=0.16  Score=42.44  Aligned_cols=36  Identities=19%  Similarity=0.113  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHh-CCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQ-SPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~-~~l~~elvLiDi~~   69 (248)
                      ++++|.|+||+|.||.++|..|+. .+.  +++++|.+.
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~   39 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDV   39 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCCh
Confidence            456899999999999999999999 785  799999875

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=91.83  E-value=0.14  Score=44.98  Aligned_cols=34  Identities=9%  Similarity=0.146  Sum_probs=30.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||+ |..|.++|+.|...++  +++|+|..+
T Consensus        14 ~~dvvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~~   47 (360)
T 3ab1_A           14 MRDLTIIGG-GPTGIFAAFQCGMNNI--SCRIIESMP   47 (360)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCCEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            468999999 9999999999999886  899999865

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=91.82  E-value=0.3  Score=41.26  Aligned_cols=35  Identities=26%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   41 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNL   41 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCH
Confidence            45899999999999999999999985  799999876

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=91.81  E-value=0.14  Score=43.66  Aligned_cols=34  Identities=21%  Similarity=0.386  Sum_probs=29.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||.|+||+|+||++++..|..++. .+++++|.+.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~-~~V~~~~r~~   34 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLK   34 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCS
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCC-cEEEEEccCC
Confidence            689999999999999999999873 3788888765

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=91.80  E-value=0.22  Score=41.87  Aligned_cols=36  Identities=14%  Similarity=0.310  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~   43 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDK   43 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            456899999999999999999999985  799999876

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=91.79  E-value=0.23  Score=43.72  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+||+|.||.++|..|+.++.  ++++.|.+.
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~   42 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQ   42 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            345899999999999999999999986  799999986

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=91.75  E-value=0.053  Score=45.89  Aligned_cols=34  Identities=32%  Similarity=0.576  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||.|+||+|+||++++..|..++.  +++++|.++
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~   36 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVD   36 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            4899999999999999999998873  788888765

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=91.75  E-value=0.15  Score=47.87  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+|.|||| |-+|.++|+.|+.+++  +++|+|..+
T Consensus        11 ~~~dVlIVGa-GpaGl~~A~~La~~G~--~v~vlE~~~   45 (499)
T 2qa2_A           11 SDASVIVVGA-GPAGLMLAGELRLGGV--DVMVLEQLP   45 (499)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCS
T ss_pred             CCCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCC
Confidence            4579999999 9999999999999997  799999865

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=91.74  E-value=0.18  Score=42.45  Aligned_cols=36  Identities=17%  Similarity=0.206  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.+++..|+.++.  +++++|.++
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~   48 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNE   48 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=91.73  E-value=0.15  Score=42.44  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ..+|+|||+ |..|..+|+.|+..+.  +++|+|..
T Consensus         3 ~~dVvVVGg-G~aGl~aA~~la~~g~--~v~lie~~   35 (232)
T 2cul_A            3 AYQVLIVGA-GFSGAETAFWLAQKGV--RVGLLTQS   35 (232)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEecC
Confidence            358999999 9999999999999986  79999986

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=91.73  E-value=0.19  Score=42.53  Aligned_cols=36  Identities=17%  Similarity=0.349  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.+|.++|..|+.++.  +++++|.+.
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   42 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDI   42 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999986  799999876

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=91.72  E-value=0.18  Score=44.94  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=32.3

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....+||+|||+ |++|..+|..|...+.  ++..+|.+.
T Consensus       152 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~  188 (330)
T 2gcg_A          152 GLTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQ  188 (330)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSS
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCC
Confidence            345689999999 9999999999998885  799999875

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=91.71  E-value=0.21  Score=42.41  Aligned_cols=45  Identities=13%  Similarity=0.278  Sum_probs=35.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++  .+..+.++.
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~   55 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIR   55 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            456899999999999999999999985  799999876  333344443

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=91.68  E-value=0.13  Score=47.17  Aligned_cols=33  Identities=33%  Similarity=0.502  Sum_probs=28.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEE
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY   65 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLi   65 (248)
                      +++||+|+||+|.+|..+..+|...+.+ ||..+
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~-el~~l   50 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHPEF-EIHAL   50 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSE-EEEEE
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCCCc-eEEEe
Confidence            4579999999999999999999998865 67544

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=91.67  E-value=0.18  Score=41.74  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.+++..|+.++.  +++++|.+.
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~   41 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSG   41 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            456899999999999999999999985  799999875

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=91.66  E-value=0.23  Score=41.91  Aligned_cols=36  Identities=25%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   46 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDV   46 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=91.65  E-value=0.15  Score=43.52  Aligned_cols=36  Identities=17%  Similarity=0.104  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~   39 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRT   39 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSG
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999985  899999876

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=91.62  E-value=0.25  Score=41.73  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~   43 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQ   43 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=91.62  E-value=0.12  Score=48.54  Aligned_cols=33  Identities=21%  Similarity=0.391  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.+|.++|..|+..+.  ++.++|.++
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTY   34 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSH
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            68999998 9999999999999886  799999876

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=91.60  E-value=0.22  Score=44.52  Aligned_cols=37  Identities=22%  Similarity=0.366  Sum_probs=32.4

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....+||+|||+ |.+|..+|..|...+.  ++..+|.+.
T Consensus       147 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~  183 (334)
T 2dbq_A          147 DVYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTR  183 (334)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCc
Confidence            345679999999 9999999999998885  899999876

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=91.59  E-value=0.22  Score=41.32  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.+++..|+.++.  +++++|.++
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~   36 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSA   36 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5799999999999999999999984  799999876

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=91.58  E-value=0.18  Score=42.71  Aligned_cols=45  Identities=22%  Similarity=0.238  Sum_probs=35.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.+.  .+....++.
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~   74 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIV   74 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence            446899999999999999999999985  799999876  333334443

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=91.58  E-value=0.13  Score=43.77  Aligned_cols=32  Identities=16%  Similarity=0.131  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .+|+|||+ |..|.++|+.|...+.  +++|+|.+
T Consensus        16 ~~vvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~   47 (323)
T 3f8d_A           16 FDVIIVGL-GPAAYGAALYSARYML--KTLVIGET   47 (323)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESS
T ss_pred             cCEEEECc-cHHHHHHHHHHHHCCC--cEEEEecc
Confidence            59999999 9999999999999986  79999985

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=91.57  E-value=0.11  Score=47.07  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=30.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhC--CCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQS--PLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~--~l~~elvLiDi~~   69 (248)
                      ..|+|||+ |-+|.++|+.|+.+  ++  +++|+|...
T Consensus        37 ~dVvIIGa-Gi~Gls~A~~La~~~pG~--~V~vlE~~~   71 (405)
T 3c4n_A           37 FDIVVIGA-GRMGAACAFYLRQLAPGR--SLLLVEEGG   71 (405)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHCTTS--CEEEECSSC
T ss_pred             CCEEEECC-cHHHHHHHHHHHhcCCCC--eEEEEeCCC
Confidence            57999999 99999999999998  86  799999865

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=91.57  E-value=0.25  Score=41.48  Aligned_cols=36  Identities=17%  Similarity=0.414  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   41 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVP   41 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCc
Confidence            346899999999999999999999985  799999876

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=91.56  E-value=0.18  Score=42.46  Aligned_cols=36  Identities=17%  Similarity=0.259  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .+.++|.|+||+|.+|.+++..|+.++.  +++++|..
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~   54 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGS   54 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESS
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCC
Confidence            3457899999999999999999999985  78888883

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=91.55  E-value=0.24  Score=42.25  Aligned_cols=36  Identities=17%  Similarity=0.194  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.||.++|..|+.++.  +++++|.+.
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   55 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNL   55 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999985  799999876

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=91.55  E-value=0.18  Score=42.61  Aligned_cols=46  Identities=11%  Similarity=0.283  Sum_probs=36.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++  .+..+.++..
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~   52 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQ   52 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence            456899999999999999999999985  799999987  3334445543

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=91.54  E-value=0.2  Score=42.79  Aligned_cols=39  Identities=18%  Similarity=0.237  Sum_probs=33.8

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+.++|.|+||+|.||.++|..|+.++.  +++++|.++
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~   48 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDE   48 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            334567999999999999999999999985  799999876

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.51  E-value=0.19  Score=42.75  Aligned_cols=46  Identities=20%  Similarity=0.380  Sum_probs=37.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      +.++|.|+|++|.+|.++|..|+.++.  +++++|.++  .+..+.++..
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~   56 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQ   56 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence            456899999999999999999999986  899999887  4444555654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=91.51  E-value=0.15  Score=47.90  Aligned_cols=35  Identities=26%  Similarity=0.366  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+|.|||| |-+|.++|+.|+..++  +++|+|..+
T Consensus        10 ~~~dVlIVGa-GpaGl~~A~~La~~G~--~v~vlE~~~   44 (500)
T 2qa1_A           10 SDAAVIVVGA-GPAGMMLAGELRLAGV--EVVVLERLV   44 (500)
T ss_dssp             SBCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCC
T ss_pred             CCCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            4569999999 9999999999999997  799999865

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=91.50  E-value=0.23  Score=41.43  Aligned_cols=34  Identities=24%  Similarity=0.353  Sum_probs=31.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~   36 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNP   36 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5799999999999999999999985  799999876

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=91.49  E-value=0.25  Score=41.66  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   41 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQV   41 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            456899999999999999999999985  799999876

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=91.44  E-value=0.2  Score=41.63  Aligned_cols=36  Identities=11%  Similarity=0.226  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.+++..|+.++.  +++++|.+.
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~   40 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHS   40 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=91.43  E-value=0.18  Score=45.67  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|+|||+ |..|.++|+.|+.++. .+++|+|...
T Consensus         6 ~~dVvIIGg-G~aGlsaA~~La~~G~-~~V~vlE~~~   40 (438)
T 3dje_A            6 SSSLLIVGA-GTWGTSTALHLARRGY-TNVTVLDPYP   40 (438)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSC
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            458999999 9999999999999986 3799999876

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=91.42  E-value=0.26  Score=41.58  Aligned_cols=36  Identities=22%  Similarity=0.308  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   41 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNR   41 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=91.41  E-value=0.18  Score=44.70  Aligned_cols=37  Identities=14%  Similarity=0.372  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|++|++++..|..+ +. .+++++|.++
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~   57 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDE   57 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECCh
Confidence            3579999999999999999999987 63 4799999875

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=91.37  E-value=0.21  Score=41.65  Aligned_cols=36  Identities=25%  Similarity=0.263  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~   39 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQ   39 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=91.36  E-value=0.17  Score=43.28  Aligned_cols=46  Identities=17%  Similarity=0.177  Sum_probs=36.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      +.++|.|+||+|.||.++|..|+.++.  .+++.|.+.  .+..+.+|..
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~   58 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKN   58 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHT
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence            446889999999999999999999986  899999886  3344445543

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=91.34  E-value=0.17  Score=43.43  Aligned_cols=34  Identities=9%  Similarity=0.163  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+|+|||+ |..|.++|..|...++  +++|+|..+
T Consensus         7 ~~~vvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~~   40 (332)
T 3lzw_A            7 VYDITIIGG-GPVGLFTAFYGGMRQA--SVKIIESLP   40 (332)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHCCC--CEEEEEcCC
Confidence            358999999 9999999999999886  899999876

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=91.33  E-value=1.1  Score=39.40  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=66.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcCchhhcCC------CCCCeeE
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQLKGL------NPTDVNV  105 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~~d~~l~v------~p~~V~~  105 (248)
                      +++||+|||++|.+|...+-.+...+ +.-+.++|.++..+.+..     ....+..|++.++.+..      ...+|++
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~~-~~lvav~d~~~~~~~~~~-----~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~   75 (312)
T 3o9z_A            2 HMTRFALTGLAGYIAPRHLKAIKEVG-GVLVASLDPATNVGLVDS-----FFPEAEFFTEPEAFEAYLEDLRDRGEGVDY   75 (312)
T ss_dssp             -CCEEEEECTTSSSHHHHHHHHHHTT-CEEEEEECSSCCCGGGGG-----TCTTCEEESCHHHHHHHHHHHHHTTCCCSE
T ss_pred             CceEEEEECCChHHHHHHHHHHHhCC-CEEEEEEcCCHHHHHHHh-----hCCCCceeCCHHHHHHHhhhhcccCCCCcE
Confidence            36799999996789999888888776 455678998873332111     12244556554433311      3457777


Q ss_pred             eEEeccCCCcccccccCc----c------cCCCCChHHHHHHHHHHhhccceeee
Q psy14621        106 PVIGGHAGITIIPLISQA----T------PSVSFPDDQLKALTGRIQEAGTEVVK  150 (248)
Q Consensus       106 ~ViGeHsGds~vp~wS~a----~------p~~~~~~~~~~~i~~~v~~~g~eIi~  150 (248)
                      .+|.-. ...-.+.--.+    +      |+ ..+.++.+++.+..++.+-.+..
T Consensus        76 V~I~tP-~~~H~~~~~~al~aGkhVl~EKPl-a~~~~ea~~l~~~a~~~g~~~~v  128 (312)
T 3o9z_A           76 LSIASP-NHLHYPQIRMALRLGANALSEKPL-VLWPEEIARLKELEARTGRRVYT  128 (312)
T ss_dssp             EEECSC-GGGHHHHHHHHHHTTCEEEECSSS-CSCHHHHHHHHHHHHHHCCCEEE
T ss_pred             EEECCC-chhhHHHHHHHHHCCCeEEEECCC-CCCHHHHHHHHHHHHHcCCEEEE
Confidence            777633 22222222111    1      33 25667788888888887765544

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=91.33  E-value=0.31  Score=41.59  Aligned_cols=36  Identities=31%  Similarity=0.491  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+|++|.+|.++|..|+.++.  +++++|.++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   45 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA--RVVLADLPE   45 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence            456899999999999999999999985  799999987

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=91.32  E-value=0.27  Score=42.28  Aligned_cols=36  Identities=17%  Similarity=0.202  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.||.++|..|+.++.  +++++|.+.
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~   50 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDT   50 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCH
Confidence            456899999999999999999999985  799999876

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=91.28  E-value=0.2  Score=48.25  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||| |-.|.++|+.|+..++  +++|+|..+
T Consensus        23 ~~DVvIVGg-G~AGl~aA~~Lar~G~--~V~LiEr~~   56 (591)
T 3i3l_A           23 RSKVAIIGG-GPAGSVAGLTLHKLGH--DVTIYERSA   56 (591)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHcCCC--CEEEEcCCC
Confidence            359999999 9999999999999987  899999875

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=91.27  E-value=0.32  Score=41.29  Aligned_cols=46  Identities=22%  Similarity=0.270  Sum_probs=36.5

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      .+.+++.|+|++|.+|.++|..|+.++.  +++++|.+.  .+..+.++.
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~   53 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALR   53 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            3456899999999999999999999985  799999876  333444444

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=91.26  E-value=0.13  Score=43.49  Aligned_cols=33  Identities=15%  Similarity=0.201  Sum_probs=28.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhC--CCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQS--PLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~--~l~~elvLiDi~~   69 (248)
                      ||.|+||+|++|++++..|..+  +.  +++.+|.++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~   35 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNP   35 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCT
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcCh
Confidence            6899999999999999999987  53  788888765

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=91.25  E-value=0.18  Score=42.85  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=32.5

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.++|.|+|++|.+|.++|..|+.++.  +++++|.+.
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~   68 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSH   68 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4456899999999999999999999885  799999876

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=91.25  E-value=0.17  Score=45.78  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+|+|||+ |..|.++|..|...+.-.+++|+|..+
T Consensus         9 ~~~vvIIGa-G~aGl~aA~~L~~~g~~~~V~lie~~~   44 (415)
T 3lxd_A            9 RADVVIVGA-GHGGAQAAIALRQNGFEGRVLVIGREP   44 (415)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTCCSCEEEEESSS
T ss_pred             CCcEEEECC-hHHHHHHHHHHHccCcCCCEEEEecCC
Confidence            468999999 999999999999998766799999865

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=91.22  E-value=0.15  Score=47.76  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||+ |.+|.++|..|...+.  ++.++|.++
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSH
T ss_pred             CCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCH
Confidence            468999999 9999999999999886  799999876

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=91.22  E-value=0.24  Score=41.22  Aligned_cols=36  Identities=19%  Similarity=0.287  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.+|.++|..|+.++.  +++++|.++
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~   48 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTE   48 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCH
Confidence            456899999999999999999999985  799999886

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=91.22  E-value=0.24  Score=45.56  Aligned_cols=35  Identities=17%  Similarity=0.297  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|+|||| |-.|.++|+.|...+.  +++|++...
T Consensus        10 ~~~~v~IIGa-G~aGl~aA~~L~~~g~--~v~v~E~~~   44 (489)
T 2jae_A           10 GSHSVVVLGG-GPAGLCSAFELQKAGY--KVTVLEART   44 (489)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCCEEEECC-CHHHHHHHHHHHHCCC--CEEEEeccC
Confidence            4579999999 9999999999999986  899999876

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=91.20  E-value=0.26  Score=41.47  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.||.++|..|+.++.  +++++|.++
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   46 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNE   46 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999986  799999876

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=91.19  E-value=0.25  Score=42.94  Aligned_cols=46  Identities=20%  Similarity=0.385  Sum_probs=37.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      +.++|.|+||+|.||.++|..|+.++.  +++++|.+.  .+..+.+|..
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~   87 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGE   87 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh
Confidence            456899999999999999999999986  899999887  4444455544

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=91.17  E-value=0.22  Score=46.66  Aligned_cols=35  Identities=26%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+|+|||+ |..|.++|..|+..++  +++|+|..+
T Consensus        91 ~~~dVvIVGg-G~aGl~aA~~La~~G~--~V~liEk~~  125 (497)
T 2bry_A           91 TNTKCLVVGA-GPCGLRAAVELALLGA--RVVLVEKRI  125 (497)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCS
T ss_pred             CCCCEEEECc-cHHHHHHHHHHHHCCC--eEEEEEecc
Confidence            4579999999 9999999999999986  899999765

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=91.16  E-value=0.18  Score=41.66  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~   35 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSE   35 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3689999999999999999999985  699999876

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=90.51  E-value=0.04  Score=45.79  Aligned_cols=35  Identities=20%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+||+|||+ |++|.++|..|...+.  ++.++|.++
T Consensus        18 ~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~   52 (201)
T 2yjz_A           18 KQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNP   52 (201)
Confidence            4579999998 9999999999988874  788888765

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=91.15  E-value=0.11  Score=44.18  Aligned_cols=34  Identities=18%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEE-EecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSL-YDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvL-iDi~   68 (248)
                      .+.+|+|||+ |..|.++|..|...+.  +++| +|.+
T Consensus         3 ~~~~vvIIG~-G~aGl~aA~~l~~~g~--~v~li~e~~   37 (315)
T 3r9u_A            3 AMLDVAIIGG-GPAGLSAGLYATRGGL--KNVVMFEKG   37 (315)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHTC--SCEEEECSS
T ss_pred             CCceEEEECC-CHHHHHHHHHHHHCCC--CeEEEEeCC
Confidence            4569999999 9999999999999885  6777 9974

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=91.14  E-value=0.15  Score=46.17  Aligned_cols=36  Identities=17%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++||+|||+ |.-|.++|..|...  -.+++|+|..+
T Consensus         7 ~~~~~~vIvGg-G~AGl~aA~~L~~~--~~~itlie~~~   42 (385)
T 3klj_A            7 HKSTKILILGA-GPAGFSAAKAALGK--CDDITMINSEK   42 (385)
T ss_dssp             -CBCSEEEECC-SHHHHHHHHHHTTT--CSCEEEECSSS
T ss_pred             cCCCCEEEEcC-cHHHHHHHHHHhCC--CCEEEEEECCC
Confidence            35679999999 99999999999433  34899999865

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=91.14  E-value=0.17  Score=47.72  Aligned_cols=36  Identities=8%  Similarity=0.158  Sum_probs=31.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||| |..|.++|+.|...+.--+++|+|..+
T Consensus         1 M~~VvIIGg-G~AGl~aA~~L~~~~~~~~V~lie~~~   36 (565)
T 3ntd_A            1 MKKILIIGG-VAGGASAAARARRLSETAEIIMFERGE   36 (565)
T ss_dssp             CCEEEEECS-SHHHHHHHHHHHHHCSSSEEEEECSSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhhCcCCCEEEEECCC
Confidence            369999999 999999999999875445999999876

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=91.12  E-value=0.16  Score=43.77  Aligned_cols=33  Identities=21%  Similarity=0.370  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||+ |..|.++|+.|...++  +++|+|...
T Consensus        17 ~dvvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~~   49 (319)
T 3cty_A           17 FDVVIVGA-GAAGFSAAVYAARSGF--SVAILDKAV   49 (319)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CcEEEECc-CHHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            58999999 9999999999999986  799999753

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=91.11  E-value=0.16  Score=46.06  Aligned_cols=36  Identities=17%  Similarity=0.181  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++|.|+||+|+||..++..|...+.  ++++++.++
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~  103 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRAD  103 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECS
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCC
Confidence            456999999999999999999976653  788888765

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=91.11  E-value=0.09  Score=45.52  Aligned_cols=32  Identities=16%  Similarity=0.372  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      ..+|+|||+ |..|.++|+.|...++  +++|+|.
T Consensus         8 ~~~vvIIG~-G~aGl~~A~~l~~~g~--~v~lie~   39 (333)
T 1vdc_A            8 NTRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEG   39 (333)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CCEEECC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHCCC--eEEEEec
Confidence            358999999 9999999999999886  7899997

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=91.11  E-value=0.26  Score=41.92  Aligned_cols=36  Identities=25%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.||.++|..|+.++.  +++++|.++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   42 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHD   42 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCc
Confidence            346899999999999999999999985  799999875

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=91.06  E-value=0.29  Score=41.00  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~   39 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEE   39 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999985  799999875

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=91.04  E-value=0.14  Score=48.63  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|.|||| |-+|.++|+.|+..++  +++|+|...
T Consensus        27 ~dVlIVGa-GpaGl~~A~~La~~G~--~V~vlEr~~   59 (549)
T 2r0c_A           27 TDVLILGG-GPVGMALALDLAHRQV--GHLVVEQTD   59 (549)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            58999999 9999999999999997  799999865

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=91.03  E-value=0.23  Score=41.12  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEe-cCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD-IVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiD-i~~   69 (248)
                      +.++|.|+|++|.+|.++|..|+.++.  +++++| .++
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~   40 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPAS   40 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCH
Confidence            456899999999999999999999985  788884 444

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=91.02  E-value=0.16  Score=47.55  Aligned_cols=34  Identities=15%  Similarity=0.199  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|+|||+ |-+|.++|+.|+.+++  +++|+|...
T Consensus         3 ~~DVvIIGg-Gi~G~~~A~~La~~G~--~V~llE~~~   36 (501)
T 2qcu_A            3 TKDLIVIGG-GINGAGIAADAAGRGL--SVLMLEAQD   36 (501)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             cCCEEEECc-CHHHHHHHHHHHhCCC--CEEEEECCC
Confidence            357999999 9999999999999997  799999865

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=91.00  E-value=0.24  Score=41.75  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   48 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQ   48 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999985  899999876

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=90.98  E-value=0.36  Score=40.57  Aligned_cols=41  Identities=10%  Similarity=0.150  Sum_probs=34.4

Q ss_pred             ccccCCCcEEEEEcCC--CccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         27 SLYDINNAKVMVAGAS--GGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        27 ~~~~~~~~KV~IiGaa--G~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .....+.++|.|+||+  |.+|.++|..|+.++.  +++++|.+.
T Consensus         8 ~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~   50 (271)
T 3ek2_A            8 HMGFLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGD   50 (271)
T ss_dssp             -CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSG
T ss_pred             CccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecch
Confidence            3444566799999998  8999999999999985  799999875

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=90.94  E-value=0.29  Score=41.27  Aligned_cols=36  Identities=17%  Similarity=0.350  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLD   39 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999985  799999876

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=90.92  E-value=0.21  Score=47.02  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..++|+|||+ |..|.++|+.|...+.  +++|+|..+
T Consensus        42 ~~~dVvIIGg-G~aGl~aA~~l~~~G~--~V~liE~~~   76 (523)
T 1mo9_A           42 REYDAIFIGG-GAAGRFGSAYLRAMGG--RQLIVDRWP   76 (523)
T ss_dssp             SCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CcCCEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            4579999999 9999999999999886  899999876

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=90.91  E-value=0.13  Score=45.94  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=29.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||| |-+|.++|+.|+..++  +++|+|..+
T Consensus         3 ~dV~IvGa-G~aGl~~A~~L~~~G~--~v~v~E~~~   35 (394)
T 1k0i_A            3 TQVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (394)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             ccEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            47999999 9999999999999986  799999765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=90.90  E-value=0.19  Score=47.75  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=32.3

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++||+|||| |..|.++|..|...+.--+++|+|..+
T Consensus        34 ~~~~~VvIIGg-G~AGl~aA~~L~~~~~g~~V~vie~~~   71 (588)
T 3ics_A           34 WGSRKIVVVGG-VAGGASVAARLRRLSEEDEIIMVERGE   71 (588)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHCSSSEEEEECSSS
T ss_pred             ccCCCEEEECC-cHHHHHHHHHHHhhCcCCCEEEEECCC
Confidence            45679999999 999999999999874334899999876

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=90.89  E-value=0.24  Score=45.18  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=34.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC-C-chhh
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV-H-TPGV   73 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~-~-a~g~   73 (248)
                      .+..+|+|||| |.-|.++|+.|...++  ++++++.+ . .-|.
T Consensus        42 ~~~~~V~IIGA-GiaGL~aA~~L~~~G~--~V~VlE~~~~~vGGr   83 (376)
T 2e1m_A           42 GPPKRILIVGA-GIAGLVAGDLLTRAGH--DVTILEANANRVGGR   83 (376)
T ss_dssp             CSCCEEEEECC-BHHHHHHHHHHHHTSC--EEEEECSCSSCCBTT
T ss_pred             CCCceEEEECC-CHHHHHHHHHHHHCCC--cEEEEeccccccCCc
Confidence            45679999999 9999999999999986  89999988 5 4343

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=90.88  E-value=0.25  Score=44.16  Aligned_cols=43  Identities=23%  Similarity=0.198  Sum_probs=29.7

Q ss_pred             cccccCCCcEEEEEcCCCccHHHHHHHHH-hCCCcceEEEEecCC
Q psy14621         26 LSLYDINNAKVMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH   69 (248)
Q Consensus        26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~-~~~l~~elvLiDi~~   69 (248)
                      .+..++.++||+|||+ |++|...+..|. ..+-+.-+.++|.++
T Consensus        16 ~~~~~m~~~rvgiIG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~   59 (357)
T 3ec7_A           16 NLYFQGMTLKAGIVGI-GMIGSDHLRRLANTVSGVEVVAVCDIVA   59 (357)
T ss_dssp             ------CCEEEEEECC-SHHHHHHHHHHHHTCTTEEEEEEECSST
T ss_pred             ccccCCCeeeEEEECC-cHHHHHHHHHHHhhCCCcEEEEEEeCCH
Confidence            3445556789999999 999999988888 545444445899987

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=90.84  E-value=0.27  Score=47.70  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|+|||+ |-.|.++|+.|+.++.  +++|+|...
T Consensus       272 ~~DVvIIGg-GiaGlsaA~~La~~G~--~V~vlEk~~  305 (676)
T 3ps9_A          272 KREAAIIGG-GIASALLSLALLRRGW--QVTLYCADE  305 (676)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            369999999 9999999999999997  899999854

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=90.82  E-value=0.18  Score=46.35  Aligned_cols=34  Identities=21%  Similarity=0.218  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|+|||+ |..|.++|+.|+..+.  +++|+|..+
T Consensus        26 ~~dVvIIGg-G~aGl~aA~~la~~G~--~V~llEk~~   59 (447)
T 2i0z_A           26 HYDVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   59 (447)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHCCC--CEEEEECCC
Confidence            358999999 9999999999999986  899999866

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=90.80  E-value=0.26  Score=42.01  Aligned_cols=36  Identities=25%  Similarity=0.474  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~   64 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAA   64 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            456789999999999999999999986  799999876

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=90.80  E-value=0.32  Score=41.19  Aligned_cols=36  Identities=17%  Similarity=0.294  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   41 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILD   41 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999985  799999876

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=90.79  E-value=0.32  Score=40.92  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   41 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKP   41 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            446889999999999999999999985  799999887

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=90.79  E-value=0.36  Score=41.31  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.||.++|..|+.++.  +++++|.++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   56 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGE   56 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446899999999999999999999985  799999876

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=90.79  E-value=0.18  Score=46.32  Aligned_cols=35  Identities=14%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||+ |.-|.++|..|.+.+.--+|+|+|.++
T Consensus         1 PKVvIIG~-G~AGl~aA~~l~~~g~~~~V~lie~~~   35 (437)
T 4eqs_A            1 PKIVVVGA-VAGGATCASQIRRLDKESDIIIFEKDR   35 (437)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHHCSSSCEEEEESSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence            48999999 999999999998877655899999765

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=90.78  E-value=0.23  Score=48.21  Aligned_cols=36  Identities=22%  Similarity=0.281  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+||+|+||++++..|..++.  +++++|.+.
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~   45 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLS   45 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCC
Confidence            457999999999999999999999884  788888754

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=90.78  E-value=0.22  Score=45.45  Aligned_cols=34  Identities=29%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHh---CCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQ---SPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~---~~l~~elvLiDi~~   69 (248)
                      +.+|+|||+ |..|.++|+.|..   .+.  ++.|+|.++
T Consensus         4 m~~vvIIGg-G~aGl~aA~~L~~~~~~g~--~Vtlie~~~   40 (437)
T 3sx6_A            4 SAHVVILGA-GTGGMPAAYEMKEALGSGH--EVTLISAND   40 (437)
T ss_dssp             SCEEEEECC-STTHHHHHHHHHHHHGGGS--EEEEECSSS
T ss_pred             CCcEEEECC-cHHHHHHHHHHhccCCCcC--EEEEEeCCC
Confidence            469999999 9999999999998   554  899999876

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=90.77  E-value=0.32  Score=41.83  Aligned_cols=37  Identities=16%  Similarity=0.327  Sum_probs=32.8

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+++.|+||+|.||.++|..|+.++.  +++++|.+.
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~   43 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSA   43 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCh
Confidence            3456899999999999999999999986  899999876

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=90.74  E-value=0.2  Score=46.67  Aligned_cols=35  Identities=29%  Similarity=0.450  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..|.+|||+ |.+|..+|..|+..+.  +++.+|+++
T Consensus        10 ~~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~   44 (431)
T 3ojo_A           10 HGSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQ   44 (431)
T ss_dssp             --CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             cCCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            4579999999 9999999999999986  899999987

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=90.72  E-value=0.33  Score=40.75  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   41 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA--AVAIAARRV   41 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            346899999999999999999999985  799999876

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=90.65  E-value=0.17  Score=45.92  Aligned_cols=41  Identities=20%  Similarity=0.287  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGV   73 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~   73 (248)
                      +++||+|+||+|.+|..+..+|...+.+ ||+++.-....|.
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk   46 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGK   46 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTS
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCC
Confidence            3579999999999999999999888865 7777754443343

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=90.65  E-value=0.17  Score=45.92  Aligned_cols=41  Identities=20%  Similarity=0.287  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGV   73 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~   73 (248)
                      +++||+|+||+|.+|..+..+|...+.+ ||+++.-....|.
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk   46 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGK   46 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTS
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCC
Confidence            3579999999999999999999888865 7777754443343

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=90.64  E-value=0.26  Score=44.26  Aligned_cols=37  Identities=16%  Similarity=0.245  Sum_probs=32.2

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....+||+|||+ |++|..+|..|...+.  ++..+|.+.
T Consensus       161 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~  197 (333)
T 3ba1_A          161 KFSGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSK  197 (333)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSC
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCc
Confidence            345679999999 9999999999998885  799999876

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=90.64  E-value=0.4  Score=41.06  Aligned_cols=47  Identities=19%  Similarity=0.368  Sum_probs=36.3

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhcC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLSH   79 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~~   79 (248)
                      .+.+++.|+||+|.||.++|..|+.++.  +++++|.++ .+..+.++..
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~   76 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIAD   76 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHh
Confidence            3456899999999999999999999986  799999554 4444445543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=90.62  E-value=0.26  Score=42.80  Aligned_cols=45  Identities=20%  Similarity=0.301  Sum_probs=35.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.++|.|+||+|.||.++|..|+.++.  +++++|.+.  .+..+.++.
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~   76 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLR   76 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence            345899999999999999999999985  799999987  333334443

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=90.62  E-value=0.27  Score=45.66  Aligned_cols=41  Identities=24%  Similarity=0.177  Sum_probs=33.6

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCc-ceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLV-DHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~-~elvLiDi~~   69 (248)
                      ...++++|.|+||+|+||+.++..|..++-. .++++++.++
T Consensus        69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~  110 (478)
T 4dqv_A           69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE  110 (478)
T ss_dssp             CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSS
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCC
Confidence            4456789999999999999999999887322 4899999865

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=90.61  E-value=0.38  Score=41.31  Aligned_cols=46  Identities=20%  Similarity=0.382  Sum_probs=36.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      .+.++|.|+|++|.||.++|..|+.++.  +++++|.++  .+..+.++.
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~   77 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIA   77 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            3456899999999999999999999985  799999976  333334443

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=90.59  E-value=0.24  Score=42.67  Aligned_cols=34  Identities=18%  Similarity=0.378  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~   69 (248)
                      ...|.|||+ |.+|.++|+.|+.+ ++  +++|+|..+
T Consensus        39 ~~dVvIIGg-G~aGl~aA~~la~~~G~--~V~viEk~~   73 (284)
T 1rp0_A           39 ETDVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   73 (284)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             ccCEEEECc-cHHHHHHHHHHHHcCCC--eEEEEECCC
Confidence            358999999 99999999999996 75  799999876

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=90.58  E-value=0.25  Score=41.60  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~   40 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINE   40 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999985  799999876

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=90.56  E-value=0.22  Score=45.64  Aligned_cols=37  Identities=14%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             CCcEEEEEcCCCccHHHHHH-HHHhCCC-cceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSL-LLKQSPL-VDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~-~l~~~~l-~~elvLiDi~   68 (248)
                      ..+||+||||+|.||..+.- +|..++. ..|++++.-.
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~   41 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTS   41 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEech
Confidence            45799999999999999998 8888885 4588888654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=90.55  E-value=0.28  Score=43.83  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=32.6

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....++|+|||. |.+|..+|..|...+.  ++..+|.+.
T Consensus       143 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~  179 (333)
T 2d0i_A          143 SLYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHR  179 (333)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSC
T ss_pred             CCCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCc
Confidence            445679999999 9999999999998885  899999876

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.55  E-value=0.35  Score=41.10  Aligned_cols=35  Identities=26%  Similarity=0.498  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.++|.|+|++|.||.++|..|+.++.  +++++|.+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~   43 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDIC   43 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEccc
Confidence            446899999999999999999999985  79999987

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=90.50  E-value=0.32  Score=41.73  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   63 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDA   63 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=90.49  E-value=0.27  Score=42.23  Aligned_cols=135  Identities=15%  Similarity=0.178  Sum_probs=71.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEE-EEecCCc--hhh--HhhhcCccCCCeEEE-EcCch---hhcCCCCCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLS-LYDIVHT--PGV--AADLSHIESKAHVQA-FNGAD---QLKGLNPTD  102 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elv-LiDi~~a--~g~--a~DL~~~~~~~~v~~-~~~~d---~~l~v~p~~  102 (248)
                      +++||+|+|+ |++|..++-.+...+-  ||+ .+|.+..  .|.  .-|++... ...+.+ |+.++   +.+. -...
T Consensus         2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~--eLva~~d~~~~~~~gv~v~~dl~~l~-~~DVvIDft~p~a~~~~~~-l~~g   76 (243)
T 3qy9_A            2 ASMKILLIGY-GAMNQRVARLAEEKGH--EIVGVIENTPKATTPYQQYQHIADVK-GADVAIDFSNPNLLFPLLD-EDFH   76 (243)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSCC--CCSCBCSCTTTCT-TCSEEEECSCHHHHHHHHT-SCCC
T ss_pred             CceEEEEECc-CHHHHHHHHHHHhCCC--EEEEEEecCccccCCCceeCCHHHHh-CCCEEEEeCChHHHHHHHH-HhcC
Confidence            4689999999 9999999999998875  666 4787652  111  13444433 455544 55433   2222 2222


Q ss_pred             eeEeEEeccCCCcc-----cccccCcccC---CCCChH--HHHHHHHHHh----hccceeeecc-CCCCchhHHHHHHHH
Q psy14621        103 VNVPVIGGHAGITI-----IPLISQATPS---VSFPDD--QLKALTGRIQ----EAGTEVVKAK-AGAGSATLSMAYAGA  167 (248)
Q Consensus       103 V~~~ViGeHsGds~-----vp~wS~a~p~---~~~~~~--~~~~i~~~v~----~~g~eIi~~k-~gkgst~~siA~a~~  167 (248)
                      ++ .|+|-- |-+.     +-.++...|+   .+|+--  -+.++.+...    .-..||++.- ..|--+..|+|..++
T Consensus        77 ~~-vVigTT-G~s~e~~~~l~~aa~~~~v~~a~N~S~Gv~l~~~~~~~aa~~l~~~dieI~E~HH~~K~DaPSGTA~~la  154 (243)
T 3qy9_A           77 LP-LVVATT-GEKEKLLNKLDELSQNMPVFFSANMSYGVHALTKILAAAVPLLDDFDIELTEAHHNKKVDAPSGTLEKLY  154 (243)
T ss_dssp             CC-EEECCC-SSHHHHHHHHHHHTTTSEEEECSSCCHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCSSSCHHHHHHH
T ss_pred             Cc-eEeCCC-CCCHHHHHHHHHHHhcCCEEEECCccHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCHHHHHHH
Confidence            33 356644 4211     1111111122   234421  1222333222    2356778862 124456789999999


Q ss_pred             HHHHHH
Q psy14621        168 RFAFSL  173 (248)
Q Consensus       168 ~iv~aI  173 (248)
                      +.+++.
T Consensus       155 ~~i~~~  160 (243)
T 3qy9_A          155 DVIVSL  160 (243)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            888443

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=90.48  E-value=0.16  Score=47.50  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||+ |-.|.++|+.|+.+++  +++|+|..+
T Consensus         8 ~dVvIVGg-G~aGl~aA~~La~~G~--~V~liE~~~   40 (512)
T 3e1t_A            8 FDLIVIGG-GPGGSTLASFVAMRGH--RVLLLEREA   40 (512)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHhCCC--CEEEEccCC
Confidence            58999999 9999999999999987  899999875

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=90.46  E-value=0.27  Score=41.37  Aligned_cols=45  Identities=18%  Similarity=0.367  Sum_probs=35.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~   78 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++.+..+.++.
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~   47 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIA   47 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHH
Confidence            346899999999999999999999985  799999876422333443

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=90.46  E-value=1.8  Score=38.05  Aligned_cols=111  Identities=17%  Similarity=0.165  Sum_probs=66.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEEEcCchhhcC-------CCCCCee
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGADQLKG-------LNPTDVN  104 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~~~~~d~~l~-------v~p~~V~  104 (248)
                      +++||+|||++|.+|...+-.+...+ +.-+.++|+++..+.+.     .....+..|++.++.+.       +...+|+
T Consensus         2 ~mirvgiIG~gG~i~~~h~~~l~~~~-~~lvav~d~~~~~~~~~-----~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD   75 (318)
T 3oa2_A            2 HMKNFALIGAAGYIAPRHMRAIKDTG-NCLVSAYDINDSVGIID-----SISPQSEFFTEFEFFLDHASNLKRDSATALD   75 (318)
T ss_dssp             -CCEEEEETTTSSSHHHHHHHHHHTT-CEEEEEECSSCCCGGGG-----GTCTTCEEESSHHHHHHHHHHHTTSTTTSCC
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhCC-CEEEEEEcCCHHHHHHH-----hhCCCCcEECCHHHHHHhhhhhhhccCCCCc
Confidence            36799999996799999988888775 45678899887332211     11224455665443321       2345788


Q ss_pred             EeEEeccCCCcccccccCc----c------cCCCCChHHHHHHHHHHhhccceeee
Q psy14621        105 VPVIGGHAGITIIPLISQA----T------PSVSFPDDQLKALTGRIQEAGTEVVK  150 (248)
Q Consensus       105 ~~ViGeHsGds~vp~wS~a----~------p~~~~~~~~~~~i~~~v~~~g~eIi~  150 (248)
                      +.+|.-. ...-.+.--.+    +      |+ ..+.++.+++.+..++.+-.+..
T Consensus        76 ~V~I~tP-~~~H~~~~~~al~aGkhVl~EKPl-a~~~~ea~~l~~~a~~~g~~~~v  129 (318)
T 3oa2_A           76 YVSICSP-NYLHYPHIAAGLRLGCDVICEKPL-VPTPEMLDQLAVIERETDKRLYN  129 (318)
T ss_dssp             EEEECSC-GGGHHHHHHHHHHTTCEEEECSSC-CSCHHHHHHHHHHHHHHTCCEEE
T ss_pred             EEEECCC-cHHHHHHHHHHHHCCCeEEEECCC-cCCHHHHHHHHHHHHHhCCEEEE
Confidence            7777643 22222222111    1      33 25667778888888877765544

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.46  E-value=0.33  Score=41.14  Aligned_cols=45  Identities=18%  Similarity=0.236  Sum_probs=35.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.+++.|+|++|.||.++|..|+.++.  ++++.|.+.  .+..+.++.
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~   56 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVT   56 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHH
Confidence            346899999999999999999999986  799999876  333344443

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=90.45  E-value=0.26  Score=41.19  Aligned_cols=36  Identities=22%  Similarity=0.365  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA--KVIATDINE   40 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            346899999999999999999999985  799999875

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=90.39  E-value=0.21  Score=45.68  Aligned_cols=36  Identities=14%  Similarity=0.277  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHH-HHHhCCC-cceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSL-LLKQSPL-VDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~-~l~~~~l-~~elvLiDi~~   69 (248)
                      +||+||||+|.||..+.- +|..++. ..+++++.-..
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~   38 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ   38 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc
Confidence            699999999999999998 8898885 35888886543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=90.39  E-value=0.36  Score=41.08  Aligned_cols=35  Identities=17%  Similarity=0.315  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.++|.|+|++|.||.++|..|+.++.  +++++|.+
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~   46 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLC   46 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecc
Confidence            456899999999999999999999985  79999987

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=90.39  E-value=0.22  Score=45.57  Aligned_cols=35  Identities=20%  Similarity=0.107  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||+|||+ |+-|.++|..|...+---+|.|||.++
T Consensus         3 K~VvIIGg-G~aGl~aA~~L~~~~~~~~VtlI~~~~   37 (430)
T 3hyw_A            3 KHVVVIGG-GVGGIATAYNLRNLMPDLKITLISDRP   37 (430)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred             CcEEEECC-CHHHHHHHHHHhccCcCCeEEEEcCCC
Confidence            38999999 999999999998755334899999876

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=90.38  E-value=0.37  Score=41.07  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   55 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNE   55 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=90.35  E-value=0.21  Score=43.14  Aligned_cols=34  Identities=15%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||+ |..|.++|+.|...+.  +++|+|...
T Consensus         8 ~~dvvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~~   41 (325)
T 2q7v_A            8 DYDVVIIGG-GPAGLTAAIYTGRAQL--STLILEKGM   41 (325)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHcCC--cEEEEeCCC
Confidence            358999999 9999999999999886  899999864

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=90.34  E-value=0.39  Score=40.98  Aligned_cols=37  Identities=19%  Similarity=0.369  Sum_probs=32.8

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+++.|+|++|.+|.++|..|+.++.  +++++|.+.
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~   40 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSA   40 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccc
Confidence            3456899999999999999999999985  799999876

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=90.32  E-value=0.26  Score=41.31  Aligned_cols=34  Identities=15%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      +.++|.|+||+|.+|.+++..|+.++.  +++++|.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r   39 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYR   39 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEES
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcC
Confidence            456899999999999999999999985  7999998

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=90.29  E-value=0.21  Score=45.72  Aligned_cols=36  Identities=11%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+|+|||| |-.|.++|+.|...+---+++|+|...
T Consensus         4 ~~~v~IiGa-G~~Gl~~A~~L~~~g~~~~v~v~E~~~   39 (475)
T 3lov_A            4 SKRLVIVGG-GITGLAAAYYAERAFPDLNITLLEAGE   39 (475)
T ss_dssp             SCEEEEECC-BHHHHHHHHHHHHHCTTSEEEEECSSS
T ss_pred             cccEEEECC-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            469999999 999999999999987222899999865

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=90.28  E-value=0.26  Score=44.43  Aligned_cols=36  Identities=19%  Similarity=0.384  Sum_probs=29.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .++||+|+||+|.+|..+...|...+-+ |++.+...
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~   38 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVS   38 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEE
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEec
Confidence            3579999999999999999999987766 66666443

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=90.28  E-value=0.25  Score=41.65  Aligned_cols=44  Identities=20%  Similarity=0.296  Sum_probs=35.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADL   77 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL   77 (248)
                      +.+++.|+||+|.+|.++|..|+.++.  +++++|.++  ++..+.++
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~   51 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEI   51 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHH
Confidence            456899999999999999999999985  799999987  33333444

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=90.26  E-value=0.12  Score=44.29  Aligned_cols=33  Identities=18%  Similarity=0.335  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ..+|+|||+ |..|.++|+.|...+.  +++|+|..
T Consensus         5 ~~~vvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~   37 (320)
T 1trb_A            5 HSKLLILGS-GPAGYTAAVYAARANL--QPVLITGM   37 (320)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCS
T ss_pred             cCCEEEECc-CHHHHHHHHHHHHCCC--cEEEEccC
Confidence            358999999 9999999999999886  78899954

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=90.26  E-value=0.23  Score=44.86  Aligned_cols=35  Identities=40%  Similarity=0.642  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus       118 ~~~VlvvG~-GglGs~va~~La~aGv-g~i~lvD~D~  152 (353)
T 3h5n_A          118 NAKVVILGC-GGIGNHVSVILATSGI-GEIILIDNDQ  152 (353)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEEECCB
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEECCCc
Confidence            469999999 9999999999999985 7899999764

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=90.25  E-value=0.33  Score=41.87  Aligned_cols=46  Identities=20%  Similarity=0.342  Sum_probs=36.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      +.++|.|+||+|.||.++|..|+..+.  +++++|.+.  ++..+.++..
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~   74 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVG   74 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence            345789999999999999999999986  899999876  3444445543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=90.25  E-value=0.24  Score=41.95  Aligned_cols=46  Identities=26%  Similarity=0.454  Sum_probs=36.2

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      .+.+++.|+||+|.+|.++|..|+.++.  +++++|.+.  .+..+.++.
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~   57 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIR   57 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            3456899999999999999999999985  799999876  333344443

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=90.24  E-value=0.34  Score=40.73  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.+|.++|..|+.++.  +++++|.++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~   40 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINA   40 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999985  799999876

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=90.23  E-value=0.34  Score=41.19  Aligned_cols=43  Identities=14%  Similarity=0.188  Sum_probs=34.7

Q ss_pred             ccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         25 HLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        25 ~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+...+.+++.|+|++|.+|.++|..|+.++.  ++++.|.+.
T Consensus        10 ~~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~   52 (270)
T 3is3_A           10 TYIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANS   52 (270)
T ss_dssp             -CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             ccCCCCcCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            3444445667899999999999999999999986  788888765

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=90.22  E-value=0.31  Score=41.82  Aligned_cols=34  Identities=18%  Similarity=0.332  Sum_probs=31.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~   55 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRRE   55 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            5899999999999999999999985  799999876

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=90.22  E-value=0.26  Score=40.84  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=30.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.+++..|+.++...     +++++|.++
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~   43 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA   43 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH
Confidence            579999999999999999999887422     789999876

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=90.22  E-value=0.4  Score=41.41  Aligned_cols=36  Identities=17%  Similarity=0.444  Sum_probs=32.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.||.++|..|+.++.  +++++|.+.
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~   81 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDE   81 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            456899999999999999999999985  799999876

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=90.20  E-value=0.34  Score=40.93  Aligned_cols=36  Identities=31%  Similarity=0.478  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   41 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNR   41 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999985  799999876

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=90.19  E-value=0.26  Score=41.55  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         4 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   38 (260)
T 1x1t_A            4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGD   38 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCc
Confidence            45899999999999999999999985  799999876

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=90.14  E-value=0.29  Score=44.68  Aligned_cols=43  Identities=26%  Similarity=0.485  Sum_probs=32.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCC-cceEEEEecCCchhhHh
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPL-VDHLSLYDIVHTPGVAA   75 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l-~~elvLiDi~~a~g~a~   75 (248)
                      ++||+||||+|.+|..+..+|..++. ..||.++.-....|..+
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~   45 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL   45 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEE
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcc
Confidence            36999999999999999999888742 45788887554444433

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=90.14  E-value=0.3  Score=41.54  Aligned_cols=36  Identities=22%  Similarity=0.269  Sum_probs=31.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.||.++|..|+.++.  +++++|.+.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~   62 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSI   62 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            446899999999999999999999986  899999875

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=90.07  E-value=0.29  Score=41.46  Aligned_cols=45  Identities=20%  Similarity=0.245  Sum_probs=29.5

Q ss_pred             ccccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         23 VDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        23 ~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+-|.......++|.|+||+|.||.++|..|+.++.  ++++++...
T Consensus        16 ~n~~~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~   60 (267)
T 4iiu_A           16 ENLYFQSNAMSRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRD   60 (267)
T ss_dssp             ---------CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             hhhhhccccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            344444444567899999999999999999999985  565655443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=90.03  E-value=0.25  Score=49.11  Aligned_cols=34  Identities=15%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -.||+|||| |..|+-+|+.++..++  +++|+|+++
T Consensus       316 i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~  349 (742)
T 3zwc_A          316 VSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDP  349 (742)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSH
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchH
Confidence            469999999 9999999999999998  899999987

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=90.02  E-value=0.37  Score=41.35  Aligned_cols=45  Identities=24%  Similarity=0.343  Sum_probs=36.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.+++.|+|++|.+|.++|..|+.++.  ++++.|.++  .+..+.++.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~   78 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRII   78 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHH
Confidence            456899999999999999999999986  799999987  444444443

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=90.01  E-value=0.38  Score=42.58  Aligned_cols=39  Identities=18%  Similarity=0.415  Sum_probs=33.4

Q ss_pred             cccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         28 LYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        28 ~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ......++|+|||. |++|..+|..|...+.  ++..+|.+.
T Consensus       137 ~~~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~  175 (313)
T 2ekl_A          137 GLELAGKTIGIVGF-GRIGTKVGIIANAMGM--KVLAYDILD  175 (313)
T ss_dssp             CCCCTTCEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCCCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCc
Confidence            34456689999999 9999999999998885  899999876

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=89.98  E-value=0.31  Score=41.76  Aligned_cols=45  Identities=18%  Similarity=0.190  Sum_probs=35.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      .++|.|+|++|.||.++|..|+.++.  +++++|.++  ++..+.++..
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~   70 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRA   70 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHh
Confidence            45799999999999999999999985  799999876  3444445543

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=89.98  E-value=0.19  Score=43.16  Aligned_cols=33  Identities=33%  Similarity=0.495  Sum_probs=26.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhC--CCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQS--PLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~--~l~~elvLiDi~~   69 (248)
                      ||.|+||+|+||++++..|..+  +.  +++.+|.+.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~   35 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQ   35 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCC
Confidence            6899999999999999988876  42  677777654

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=89.97  E-value=0.26  Score=44.41  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=27.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEe
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD   66 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiD   66 (248)
                      ++||+|+||+|.||..++..|...+-+ |++.+-
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~-elv~v~   36 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYL-EVKQVT   36 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTE-EEEEEB
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEE
Confidence            579999998899999999999888754 555543

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=89.97  E-value=0.23  Score=49.52  Aligned_cols=35  Identities=20%  Similarity=0.348  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||+ |-+|.++|+.|+.++. .+++|+|...
T Consensus         4 ~~dVvIIGg-Gi~Gls~A~~La~~G~-~~V~vlE~~~   38 (830)
T 1pj5_A            4 TPRIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   38 (830)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHhCCC-CcEEEEeCCC
Confidence            458999999 9999999999999986 5799999865

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=89.96  E-value=0.41  Score=40.81  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   43 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDE   43 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999985  799999876

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=89.96  E-value=0.27  Score=44.56  Aligned_cols=34  Identities=26%  Similarity=0.452  Sum_probs=27.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEe
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD   66 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiD   66 (248)
                      +++||+|+||+|.||..++..|..++-+ |++.+.
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~   48 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMT   48 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEB
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEe
Confidence            3479999998899999999999988755 455553

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=89.94  E-value=0.27  Score=43.40  Aligned_cols=38  Identities=8%  Similarity=0.038  Sum_probs=30.6

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++++||+|||+ |++|...+..|...+-+.-+.++|.++
T Consensus         3 m~~~~igiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~   40 (330)
T 3e9m_A            3 LDKIRYGIMST-AQIVPRFVAGLRESAQAEVRGIASRRL   40 (330)
T ss_dssp             CCCEEEEECSC-CTTHHHHHHHHHHSSSEEEEEEBCSSS
T ss_pred             CCeEEEEEECc-hHHHHHHHHHHHhCCCcEEEEEEeCCH
Confidence            45689999999 999999999888865444445889887

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=89.91  E-value=0.25  Score=42.25  Aligned_cols=34  Identities=15%  Similarity=0.243  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||+ |..|.++|+.|...+.. +++|+|.+.
T Consensus         2 ~dvvIIG~-G~aGl~aA~~l~~~g~~-~v~lie~~~   35 (311)
T 2q0l_A            2 IDCAIIGG-GPAGLSAGLYATRGGVK-NAVLFEKGM   35 (311)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTCS-SEEEECSSS
T ss_pred             ceEEEECc-cHHHHHHHHHHHHCCCC-cEEEEcCCC
Confidence            58999999 99999999999998753 799999753

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=89.87  E-value=0.28  Score=41.97  Aligned_cols=44  Identities=23%  Similarity=0.395  Sum_probs=35.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      .++|.|+||+|.+|.++|..|+..+.  +++++|.++  ++..+.++.
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~   49 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIR   49 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence            35789999999999999999999985  799999876  344444443

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=89.87  E-value=0.26  Score=43.43  Aligned_cols=38  Identities=3%  Similarity=-0.016  Sum_probs=29.3

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++++||+|||+ |++|...+..|...+-+.-+.++|.++
T Consensus         3 m~~~rigiiG~-G~ig~~~~~~l~~~~~~~~~av~d~~~   40 (329)
T 3evn_A            3 LSKVRYGVVST-AKVAPRFIEGVRLAGNGEVVAVSSRTL   40 (329)
T ss_dssp             --CEEEEEEBC-CTTHHHHHHHHHHHCSEEEEEEECSCS
T ss_pred             CCceEEEEEec-hHHHHHHHHHHHhCCCcEEEEEEcCCH
Confidence            45689999999 999999988887766554456889876

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=89.86  E-value=0.22  Score=41.98  Aligned_cols=34  Identities=15%  Similarity=0.054  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   35 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESF   35 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGG
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3689999999999999999999985  799999876

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=89.84  E-value=0.26  Score=44.61  Aligned_cols=34  Identities=38%  Similarity=0.461  Sum_probs=28.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCC-----CcceEEEEe
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSP-----LVDHLSLYD   66 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~-----l~~elvLiD   66 (248)
                      +++||+|+||+|.||..+...|..++     .+ |++++-
T Consensus         8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~   46 (352)
T 2nqt_A            8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALT   46 (352)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEE
Confidence            45799999999999999999999887     43 666664

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=89.84  E-value=0.28  Score=46.05  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHh------------CCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQ------------SPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~------------~~l~~elvLiDi~~   69 (248)
                      ...+|+|||+ |-.|.++|..|+.            .++  +++|+|..+
T Consensus         6 ~~~dVvIVGg-G~aGl~aA~~La~~~~~~~~~~~~~~G~--~V~liE~~~   52 (526)
T 2pyx_A            6 PITEIIIVGG-GTAGWITAGLLAAEHNVDKGVLAHSPKL--NITLIESPD   52 (526)
T ss_dssp             CCCEEEEECC-HHHHHHHHHHHHHHHHEETTEECSSCSC--EEEEEECSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhhhccccccccCCCCC--eEEEEeCCC
Confidence            3469999999 9999999999999            776  899999754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=89.80  E-value=0.26  Score=42.08  Aligned_cols=34  Identities=24%  Similarity=0.536  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +. ||+|||+ |.+|.+++..|...+.  ++.++|.+.
T Consensus       116 ~~-~v~iiG~-G~~g~~~a~~l~~~g~--~v~v~~r~~  149 (263)
T 2d5c_A          116 KG-PALVLGA-GGAGRAVAFALREAGL--EVWVWNRTP  149 (263)
T ss_dssp             CS-CEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSH
T ss_pred             CC-eEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            45 9999999 9999999999999985  899999875

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=89.80  E-value=0.31  Score=41.91  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+|++|.||.++|..|+.++.  +++++|.++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~   63 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDG   63 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446799999999999999999999986  899999876

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=89.79  E-value=0.29  Score=47.62  Aligned_cols=36  Identities=28%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|||| |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus       325 ~~arVLIVGa-GGLGs~vA~~La~aGV-G~ItLvD~D~  360 (615)
T 4gsl_A          325 KNTKVLLLGA-GTLGCYVSRALIAWGV-RKITFVDNGT  360 (615)
T ss_dssp             HTCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCCB
T ss_pred             hCCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCC
Confidence            4569999999 9999999999999995 7999999864

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=89.79  E-value=0.23  Score=47.42  Aligned_cols=35  Identities=14%  Similarity=0.318  Sum_probs=31.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....|+|||+ |-+|.++|+.|+.+++  +++|+|...
T Consensus        31 ~~~DVvVIGg-Gi~G~~~A~~La~rG~--~V~LlE~~~   65 (571)
T 2rgh_A           31 EELDLLIIGG-GITGAGVAVQAAASGI--KTGLIEMQD   65 (571)
T ss_dssp             SCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCCCEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            3468999999 9999999999999997  799999765

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=89.78  E-value=0.23  Score=46.95  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||+|||+ |.+|.++|..|+..+.  ++.++|+++
T Consensus        10 ~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~   43 (497)
T 2p4q_A           10 SADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQ   43 (497)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            359999999 9999999999999986  899999987

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=89.75  E-value=0.24  Score=44.99  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|+|||+ |..|.++|..|...+.-.+++|+|..+
T Consensus         7 ~~~vvIIG~-G~aGl~aA~~l~~~g~~~~V~lie~~~   42 (408)
T 2gqw_A            7 KAPVVVLGA-GLASVSFVAELRQAGYQGLITVVGDEA   42 (408)
T ss_dssp             CSSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEESSC
T ss_pred             CCcEEEECC-hHHHHHHHHHHHccCCCCeEEEEECCC
Confidence            468999999 999999999999988645799999865

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=89.73  E-value=0.55  Score=40.29  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++.|+||+|.||.++|..|+.++.  +++++|.+.
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~   63 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGD   63 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            45789999999999999999999986  799999754

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.72  E-value=0.31  Score=41.36  Aligned_cols=36  Identities=17%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHA   40 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999999985  799999876

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=89.71  E-value=0.41  Score=40.70  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~   40 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA--SLVAVDREE   40 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999985  899999876

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=89.66  E-value=0.25  Score=45.77  Aligned_cols=34  Identities=15%  Similarity=0.069  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|+|||+ |..|.++|..|+..+.  +++|+|.++
T Consensus        11 ~~dVvVIGg-G~aGl~aA~~l~~~g~--~V~liE~~~   44 (479)
T 2hqm_A           11 HYDYLVIGG-GSGGVASARRAASYGA--KTLLVEAKA   44 (479)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTSC--CEEEEESSC
T ss_pred             cCCEEEEcC-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            469999999 9999999999999876  899999865

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=89.65  E-value=0.31  Score=45.06  Aligned_cols=34  Identities=12%  Similarity=0.128  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|+|||+ |..|.++|..|+..+.  +++|+|.++
T Consensus         4 ~~dVvIIGg-G~aGl~aA~~l~~~g~--~V~liE~~~   37 (463)
T 2r9z_A            4 HFDLIAIGG-GSGGLAVAEKAAAFGK--RVALIESKA   37 (463)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             cCcEEEECC-CHHHHHHHHHHHhCCC--cEEEEcCCC
Confidence            479999999 9999999999999886  899999875

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=89.62  E-value=0.41  Score=40.48  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+|++|.+|.++|..|+.++.  +++++|.++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~   42 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNE   42 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            346899999999999999999999986  799999876

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=89.61  E-value=0.24  Score=45.35  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+|+|||| |-.|.++|+.|...+.  +++|+|...
T Consensus        15 ~~~~v~iiG~-G~~Gl~aa~~l~~~g~--~v~v~E~~~   49 (478)
T 2ivd_A           15 TGMNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   49 (478)
T ss_dssp             --CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEEcCC
Confidence            4569999999 9999999999999987  899999876

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.55  E-value=0.33  Score=42.13  Aligned_cols=37  Identities=16%  Similarity=0.427  Sum_probs=32.6

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.++|.|+||+|.+|.++|..|+.++.  +++++|.++
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   60 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNE   60 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            3456899999999999999999999985  799999876

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=89.54  E-value=0.32  Score=43.06  Aligned_cols=37  Identities=22%  Similarity=0.507  Sum_probs=30.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||+|||+ |++|..++..+...+-+.-+.++|.++
T Consensus         2 ~~irV~IiG~-G~mG~~~~~~l~~~~~~elvav~d~~~   38 (320)
T 1f06_A            2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRA   38 (320)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSS
T ss_pred             CCCEEEEEee-cHHHHHHHHHHhcCCCCEEEEEEcCCH
Confidence            4679999998 999999999888776554456889875

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=89.49  E-value=0.2  Score=43.59  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=29.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ...+|+|||+ |..|.++|+.|...++  +++|+|..
T Consensus        13 ~~~~vvIIG~-G~aGl~aA~~l~~~g~--~v~lie~~   46 (335)
T 2a87_A           13 PVRDVIVIGS-GPAGYTAALYAARAQL--APLVFEGT   46 (335)
T ss_dssp             CCEEEEEECC-HHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             CcCCEEEECC-CHHHHHHHHHHHhCCC--eEEEEecC
Confidence            3468999999 9999999999999876  78899854

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=89.48  E-value=0.45  Score=42.80  Aligned_cols=37  Identities=16%  Similarity=0.234  Sum_probs=32.3

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHH-hCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~-~~~l~~elvLiDi~~   69 (248)
                      ....++|+|||. |++|..+|..+. ..+.  ++..+|.+.
T Consensus       160 ~l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~  197 (348)
T 2w2k_A          160 NPRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAP  197 (348)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSC
T ss_pred             CCCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCC
Confidence            345679999999 999999999998 8875  899999876

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=89.47  E-value=0.38  Score=40.86  Aligned_cols=37  Identities=24%  Similarity=0.358  Sum_probs=32.2

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.++|.|+||+|.+|.++|..|+.++.  +++++|.+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~   63 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSN   63 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            3456899999999999999999999986  789999855

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=89.47  E-value=0.37  Score=44.29  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||+ |..|.++|+.|...+.  +++|+|..+
T Consensus         4 ~~dvvIIGg-G~aGl~aA~~l~~~g~--~V~lie~~~   37 (467)
T 1zk7_A            4 PVQVAVIGS-GGAAMAAALKAVEQGA--QVTLIERGT   37 (467)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            468999999 9999999999999886  899999764

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=89.46  E-value=0.46  Score=40.48  Aligned_cols=35  Identities=14%  Similarity=0.427  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.+++.|+|++|.||.++|..|+.++.  +++++|.+
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA--DIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCC
Confidence            456899999999999999999999985  79999986

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=89.43  E-value=0.35  Score=40.66  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+|++|.+|.++|..|+.++.  +++++|.++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~   43 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA--KVIGTATSE   43 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446899999999999999999999986  799999876

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=89.42  E-value=0.3  Score=40.31  Aligned_cols=34  Identities=29%  Similarity=0.509  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEE-ecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY-DIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLi-Di~~   69 (248)
                      ++|.|+||+|.+|.+++..|+.++.  +++++ +.++
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~   36 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNR   36 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            4799999999999999999999985  67777 6654

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=89.42  E-value=0.32  Score=47.18  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +..||.|||| |.+|+.+|..|+..|+ .+|.|+|-+
T Consensus       326 ~~~kVLIVGa-GGLGs~va~~La~aGV-G~ItLvD~D  360 (598)
T 3vh1_A          326 KNTKVLLLGA-GTLGCYVSRALIAWGV-RKITFVDNG  360 (598)
T ss_dssp             HTCEEEEECC-SHHHHHHHHHHHTTTC-CEEEEECCS
T ss_pred             hCCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            3569999999 9999999999999995 799999876

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=89.42  E-value=0.46  Score=41.44  Aligned_cols=35  Identities=23%  Similarity=0.346  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCc
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHT   70 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a   70 (248)
                      ..||.|+|| |..|.++++.|...+  .+|.+++.+..
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G--~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQG--LQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTT--CEEEEECSSCT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCC--CEEEEEeCCHH
Confidence            569999999 999999999999998  68999998773

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=89.41  E-value=0.33  Score=47.30  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...|+|||+ |-.|.++|+.|+.++.  +++|+|...
T Consensus       264 ~~DVvIIGg-GiaGlsaA~~La~~G~--~V~vlEk~~  297 (689)
T 3pvc_A          264 CDDIAIIGG-GIVSALTALALQRRGA--VVTLYCADA  297 (689)
T ss_dssp             CSSEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSS
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            468999999 9999999999999997  899999854

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=89.40  E-value=0.37  Score=44.06  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||+ |..|.++|..|...+.-.+++|+|..+
T Consensus         4 ~~~vvIIGg-G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (431)
T 1q1r_A            4 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDAT   39 (431)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCcEEEEcC-HHHHHHHHHHHHccCcCCCEEEEECCC
Confidence            368999999 999999999999998755899999754

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=89.36  E-value=0.3  Score=41.80  Aligned_cols=46  Identities=13%  Similarity=0.260  Sum_probs=36.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      .+.+++.|+|++|.||.++|..|+.++.  ++++.|.++  .+..+.++.
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~   71 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFR   71 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHH
Confidence            3456899999999999999999999985  799999876  333444443

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=89.35  E-value=0.31  Score=42.81  Aligned_cols=36  Identities=17%  Similarity=0.313  Sum_probs=28.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEE-EEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLS-LYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elv-LiDi~~   69 (248)
                      +++||+|||+ |++|...+..|...+-+ ||+ ++|+++
T Consensus         8 ~~irv~IIG~-G~iG~~~~~~l~~~~~~-elvav~d~~~   44 (304)
T 3bio_A            8 KKIRAAIVGY-GNIGRYALQALREAPDF-EIAGIVRRNP   44 (304)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHCTTE-EEEEEECC--
T ss_pred             CCCEEEEECC-hHHHHHHHHHHhcCCCC-EEEEEEcCCH
Confidence            4689999999 99999999988876544 565 889877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	1e-43
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	2e-42
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	3e-27
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	3e-24
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	3e-23
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	1e-21
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	2e-21
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	1e-19
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	1e-19
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	3e-19
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	3e-19
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	1e-18
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	1e-18
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	1e-18
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	2e-18
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	5e-18
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	1e-17
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	2e-17
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	3e-17
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	5e-17
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	7e-17
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	4e-16
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	2e-13
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	1e-06
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	5e-12
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	7e-11
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	5e-06
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	1e-10
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	4e-08
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	5e-07
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	5e-08
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	1e-04
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	7e-08
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	0.001
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	2e-07
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	3e-06
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	4e-06
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	5e-06
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	0.002
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	9e-06
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	8e-04
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	1e-05
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	2e-05
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	0.002
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	2e-05
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	1e-04
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	3e-05
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	2e-04
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	4e-05
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	0.002
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	5e-05
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	0.003
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	1e-04
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	1e-04
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	0.001
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	5e-04

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  143 bits (361), Expect = 1e-43
 Identities = 107/152 (70%), Positives = 126/152 (82%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKGL+P  V+VPVIGGHAG TIIPLISQ TP V FP DQL  LTGRIQEAGTEVVKAKA
Sbjct: 15  ELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKA 74

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           GAGSATLSMAYAGARF FSL+  + G+  V+EC++VKS  T+  YFSTP+ LGK GIEKN
Sbjct: 75  GAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKN 134

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
           LG+GK+S FE++++  A+PELK +I KGEEFV
Sbjct: 135 LGIGKISPFEEKMIAEAIPELKASIKKGEEFV 166

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  139 bits (352), Expect = 2e-42
 Identities = 85/154 (55%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +LKG  P +V VPVIGGH+G+TI+PL+SQ    VSF + ++  LT RIQ AGTEVV+AKA
Sbjct: 15  ELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKA 73

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
           G GSATLSM  A ARF  SL++ L+GE  V+ECAYV+ D   A +FS P+ LGKNG+E+ 
Sbjct: 74  GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEER 133

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK 247
             +G LS FE+  ++  +  LKK+IA G+EFV K
Sbjct: 134 KSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK 167

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  100 bits (251), Expect = 3e-27
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 7/151 (4%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVS----FPDDQLKALTGRIQEAGTEVV 149
              G++  D+N  V+GGH    +  +       +      P + +  L  R +  G E+V
Sbjct: 15  MELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIV 74

Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNG 209
           +     GSA  + A +      S++   K                + ++   PV LG+NG
Sbjct: 75  EH-LKQGSAFYAPASSVVEMVESIVLDRKRVLPCA-VGLEGQYGIDKTFVGVPVKLGRNG 132

Query: 210 IEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           +E+   +  L   + +L++ +   + +N   
Sbjct: 133 VEQIYEI-NLDQADLDLLQKSAKIVDENCKM 162

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 93.7 bits (232), Expect = 3e-24
 Identities = 29/167 (17%), Positives = 54/167 (32%), Gaps = 13/167 (7%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
              G+   DV   +I G+   T  P ++ A   +   +  +            E +    
Sbjct: 14  LKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQ 73

Query: 154 GAG---------SATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD---VTEASYFST 201
             G         S+ +S A A       +  G      V        +   V +   +S 
Sbjct: 74  QRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDGNSYGVPDDLLYSF 133

Query: 202 PVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAKS 248
           PV +     +   GL  ++DF +E +     EL +      EF++ +
Sbjct: 134 PVTIKDKTWKIVEGL-PINDFSREKMDLTAKELAEEKETAFEFLSSA 179

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 90.2 bits (223), Expect = 3e-23
 Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 7/149 (4%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPD----DQLKALTGRIQEAGTEVV 149
              G++  DV   ++GGH    +          +   +    D+L  +  R ++ G E+V
Sbjct: 15  MEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIV 74

Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNG 209
                 GSA  + A A A+   ++++  K    V      +  +    YF  PV LG  G
Sbjct: 75  NLLKT-GSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGL-NDIYFGVPVILGAGG 132

Query: 210 IEKNLGLGKLSDFEKELVKAAVPELKKNI 238
           +EK L L  L++ E  L+ A+   ++  +
Sbjct: 133 VEKILEL-PLNEEEMALLNASAKAVRATL 160

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 86.0 bits (212), Expect = 1e-21
 Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 17/159 (10%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPD------------DQLKALTGRI 141
           Q  G+N  +V+  + G H    +    S     V   D            D+ + +   +
Sbjct: 14  QQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEV 73

Query: 142 QEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFST 201
           + A  +++  K     A                  +   S++++  +  SD+      S 
Sbjct: 74  KNAAYKIINGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDI----CMSV 129

Query: 202 PVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           P  L + G+   +    +SD E   +K +   LK+  A+
Sbjct: 130 PTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETAAQ 167

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 85.7 bits (211), Expect = 2e-21
 Identities = 23/152 (15%), Positives = 52/152 (34%), Gaps = 3/152 (1%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +   L+P  V+   +G H G +     S              A    +     E  K   
Sbjct: 15  EAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGF 73

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
              +     +Y  A  A  + + +  +++       + D     Y S P  +G++G+   
Sbjct: 74  TVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMGM-YLSYPAIIGRDGVLAE 132

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAKGEEFV 245
             L  L+  E+E +  +   +++   +  + +
Sbjct: 133 TTL-DLTTDEQEKLLQSRDYIQQRFDEIVDTL 163

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 81.0 bits (199), Expect = 1e-19
 Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 6/154 (3%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +  G++  +V   +IG H G +++PL+S  +          +     I E   +V     
Sbjct: 16  KFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGE 74

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKS----DVTEASYFSTPVHLGKNG 209
                     +  A    ++++ +      +           D         PV +G++G
Sbjct: 75  QIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDG 134

Query: 210 IEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE 243
           IE+ + + +L   E    + +   +KK   + + 
Sbjct: 135 IEEVVSI-ELDKDEIIAFRKSAEIIKKYCEEVKN 167

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 80.6 bits (198), Expect = 1e-19
 Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +       +V   ++G H G   +P+ S+ +   + P+         + +     +    
Sbjct: 16  EEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE 74

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKN 213
             G+     A   A    +++               +    + + F  PV LG NG+E+ 
Sbjct: 75  RKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHED-TAFGVPVSLGSNGVEEI 133

Query: 214 LGLGKLSDFEKELVKAAVPELKKNIAK 240
           +    L D+E++L+  A  +L     K
Sbjct: 134 VEW-DLDDYEQDLMADAAEKLSDQYDK 159

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 80.3 bits (197), Expect = 3e-19
 Identities = 25/154 (16%), Positives = 52/154 (33%), Gaps = 8/154 (5%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPS---VSFPDDQLKALTGRIQEAGTEVVK 150
           +   ++P  V+  ++G H G +     S AT     V     +       + +    V  
Sbjct: 14  KQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRN 72

Query: 151 AKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVT---EASYFSTPVHLGK 207
                 +   +  Y        + + +  + N +       D        Y  TP  +G 
Sbjct: 73  KAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYGLNDIYIGTPAIIGG 132

Query: 208 NGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 241
            G+++ +    LS  E + ++ +   LKK +  G
Sbjct: 133 TGLKQIIES-PLSADELKKMQDSAATLKKVLNDG 165

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 79.9 bits (196), Expect = 3e-19
 Identities = 28/155 (18%), Positives = 58/155 (37%), Gaps = 9/155 (5%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVK--- 150
           ++  ++   V+  ++G H G T  P+ S A        + +KA     ++   ++ +   
Sbjct: 14  EMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVR 72

Query: 151 ---AKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEAS-YFSTPVHLG 206
               +            A A    S        + +    Y+         Y  TP  + 
Sbjct: 73  DAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYGINDLYIGTPAVIN 132

Query: 207 KNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 241
           +NGI+  L +  L+D E+E ++ +  +LKK +   
Sbjct: 133 RNGIQNILEI-PLTDHEEESMQKSASQLKKVLTDA 166

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 78.4 bits (192), Expect = 1e-18
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 7/156 (4%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPD-----DQLKALTGRIQEAGTEV 148
           +  G++    +  VIG H              S+            +      ++     
Sbjct: 16  ERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSA 75

Query: 149 VKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKN 208
            +     G  + ++  + A  A ++++ L     V         + +  + S P  L  +
Sbjct: 76  YEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDH 135

Query: 209 GIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEF 244
           GI   + + KL   E++ ++ +   L  +I K  +F
Sbjct: 136 GISNIVKM-KLKPNEEQQLQKSATTL-WDIQKDLKF 169

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 78.0 bits (191), Expect = 1e-18
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 14/155 (9%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPD---------DQLKALTGRIQEA 144
           Q   + P DVN  ++G H    ++         +   +          +L+A+  R    
Sbjct: 14  QKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNT 73

Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVH 204
             E+V   A    A  +     A      ++ +   S ++E  Y  SD+    +  TPV 
Sbjct: 74  ALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVV 129

Query: 205 LGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 239
           LG NG+E+ + L +L+  EK     A+ E K+  A
Sbjct: 130 LGANGVEQVIEL-QLNSEEKAKFDEAIAETKRMKA 163

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 78.0 bits (191), Expect = 1e-18
 Identities = 25/158 (15%), Positives = 55/158 (34%), Gaps = 15/158 (9%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPD----------DQLKALTGRIQE 143
           +   + P +V+  +IG H    +          +                L+ +   +++
Sbjct: 14  EYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRD 73

Query: 144 AGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPV 203
           A  ++++ K               R        +   S  ++  Y + DV    Y   P 
Sbjct: 74  AAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGERDV----YIGVPA 129

Query: 204 HLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG 241
            + +NGI + + + +L+D EK     +   LK  +A+ 
Sbjct: 130 VINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLARA 166

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 77.9 bits (191), Expect = 2e-18
 Identities = 24/149 (16%), Positives = 41/149 (27%), Gaps = 7/149 (4%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQATP-----SVSFPDDQLKALTGRIQEAGTEVVKA 151
           G   + +    + G+   T+      A            DD     T             
Sbjct: 17  GKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAII 76

Query: 152 KAGAGSATLSMAYAGARFAFSLIQGLKGES-NVIECAYVKSDVTEASYFSTPVHLGKNGI 210
            A   S+  S A A        + G  G+   +   +     + E   F  PV       
Sbjct: 77  DARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEY 136

Query: 211 EKNLGLGKLSDFEKELVKAAVPELKKNIA 239
           +   GL  +  F +E +   + EL +   
Sbjct: 137 KIVQGL-SIDAFSQERINVTLNELLEEQN 164

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 76.8 bits (188), Expect = 5e-18
 Identities = 31/153 (20%), Positives = 50/153 (32%), Gaps = 7/153 (4%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           Q  G +P  V+V VIG H    +          +   +          +       K K 
Sbjct: 15  QHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKR 74

Query: 154 GAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASY------FSTPVHLGK 207
            A              A ++   ++      +     S   E          S PV LGK
Sbjct: 75  AAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGVKDLCISVPVTLGK 134

Query: 208 NGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           +G+E+ L L  L++ E E  + +   LK  I +
Sbjct: 135 HGVERILEL-NLNEEELEAFRKSASILKNAINE 166

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 1e-17
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 15/154 (9%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPD-----------DQLKALTGRIQ 142
           +  G++P+  +  ++G H   ++          VS  +           +  K +   + 
Sbjct: 16  EKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVV 75

Query: 143 EAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTP 202
           E+  EV+K K     A               +  +   S +++  Y    +    + S P
Sbjct: 76  ESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMY---GIENEVFLSLP 132

Query: 203 VHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
             L   G+   +   KL D E   +K +   L  
Sbjct: 133 CILNARGLTSVINQ-KLKDDEVAQLKKSADTLWD 165

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.3 bits (184), Expect = 2e-17
 Identities = 28/155 (18%), Positives = 56/155 (36%), Gaps = 9/155 (5%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKA 153
           +  G+NPT  +  V+G H   ++          V+         T + ++    V K   
Sbjct: 16  EKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVV 75

Query: 154 G--------AGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVHL 205
                     G  + ++  +    A S+++ LK    V         + E  + S P  L
Sbjct: 76  EGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVL 135

Query: 206 GKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
           G++GI   + +  ++  E+ L+K +   L      
Sbjct: 136 GESGITDFVKV-NMTAEEEGLLKKSADTLWNMQKN 169

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 74.5 bits (182), Expect = 3e-17
 Identities = 24/158 (15%), Positives = 54/158 (34%), Gaps = 16/158 (10%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPD-----------DQLKALTGRIQ 142
           +  G++  +V+  +IG H    +           +  +           +  K +   ++
Sbjct: 14  EKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVK 73

Query: 143 EAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTP 202
            AG  ++K K                        ++    VI   Y   DV      S P
Sbjct: 74  TAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDV----AISLP 129

Query: 203 VHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK 240
             +   G+++ L    L+  E+E ++ +  ++KK + +
Sbjct: 130 SIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLNE 166

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 74.0 bits (181), Expect = 5e-17
 Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 7/152 (4%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFPDDQLKALTGRIQEAGTEVV 149
           +  G     +    + G+   T+ P +  A     P++   D +          A     
Sbjct: 15  KKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAA 74

Query: 150 KAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD--VTEASYFSTPVHLGK 207
             +A   S+  S A A          G      V      + +  + E   +S PV    
Sbjct: 75  IIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKD 134

Query: 208 NGIEKNLGLGKLSDFEKELVKAAVPELKKNIA 239
                  GL ++++F ++ ++    EL   + 
Sbjct: 135 GAYRVVEGL-EINEFARKRMEITAQELLDEME 165

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 73.9 bits (181), Expect = 7e-17
 Identities = 29/150 (19%), Positives = 45/150 (30%), Gaps = 12/150 (8%)

Query: 97  GLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGA- 155
           G+    V+   I G+   T +P    A        + +K      +E    V K      
Sbjct: 17  GVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALI 76

Query: 156 ----GSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSD-----VTEASYFSTPVHLG 206
                S+  S A + A    SL+              V +      + E   FS P    
Sbjct: 77  QKWGRSSAASTAVSIADAIKSLVTPTPEGDWF--STGVYTTGNPYGIAEDIVFSMPCRSK 134

Query: 207 KNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
            +G  +        DF  E +K +  EL  
Sbjct: 135 GDGDYELATDVSNDDFLWERIKKSEAELLA 164

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 71.4 bits (174), Expect = 4e-16
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 12/152 (7%)

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSF---------PDDQLKALTGRIQEA 144
               ++P DV   VIG H    +  +                    + QL+ +    + +
Sbjct: 15  DALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVS 74

Query: 145 GTEVVKAKAGAGSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDVTEASYFSTPVH 204
           G E+V+   G GSA  + A +    A S +   K           +  + +  +   P  
Sbjct: 75  GGEIVRFL-GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGL-KDMFIGLPAV 132

Query: 205 LGKNGIEKNLGLGKLSDFEKELVKAAVPELKK 236
           +G  GIE+ + L +L++ EK+  + +V ++  
Sbjct: 133 IGGAGIERVIEL-ELNEEEKKQFQKSVDDVMA 163

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 63.5 bits (154), Expect = 2e-13
 Identities = 46/63 (73%), Positives = 52/63 (82%)

Query: 34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFNGAD 93
          AKV V GASGGIGQPLSLLLK SPLV  L+LYDI HTPGVAADLSHIE++A V+ + G +
Sbjct: 1  AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPE 60

Query: 94 QLK 96
          QL 
Sbjct: 61 QLP 63

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 27/41 (65%), Positives = 30/41 (73%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMVAGAS 42
          V GASGGIGQPLSLLLK SPLV  L+LYDI +   + A  S
Sbjct: 5  VLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLS 45

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 60.0 bits (145), Expect = 5e-12
 Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 16/137 (11%)

Query: 107 VIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAG 166
           +IG H G ++    S A       +   +A+   ++    EV+K     G+     A A 
Sbjct: 26  IIGEH-GDSMFVAKSLADFD---GEVDWEAVENDVRFVAAEVIK---RKGATIFGPAVAI 78

Query: 167 ARFAFSLIQGLKGESNV---IECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFE 223
            R   ++++           ++  Y   +V        P  LGKNG E      KLSD E
Sbjct: 79  YRMVKAVVEDTGEIIPTSMILQGEYGIENV----AVGVPAKLGKNGAEVADI--KLSDEE 132

Query: 224 KELVKAAVPELKKNIAK 240
            E ++ +   L++ + +
Sbjct: 133 IEKLRNSAKILRERLEE 149

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 57.3 bits (138), Expect = 7e-11
 Identities = 9/62 (14%), Positives = 17/62 (27%), Gaps = 5/62 (8%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPL-----VDHLSLYDIVHTPGVAADLSHIESKAHVQAF 89
           + V+GA+G I   L   L    +        L L     +      ++     +     
Sbjct: 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 90 NG 91
            
Sbjct: 86 RE 87

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)

Query: 2  VAGASGGIGQPLSLLLKQSPL-----VDHLSLYDINNAKVMVAGAS 42
          V+GA+G I   L   L    +        L L     +   + G +
Sbjct: 29 VSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVA 74

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 55.8 bits (134), Expect = 1e-10
 Identities = 39/71 (54%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 35  KVMVAGASGGIGQPLSLLLK-QSPLVDHLSLYDIVH-TPGVAADLSHIESKAHVQAFNGA 92
           KV V GA+GGIGQ L+LLLK Q P    LSLYDI   TPGVA DLSHI +   ++ F+G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 93  DQLKGLNPTDV 103
           D    L   DV
Sbjct: 62  DATPALEGADV 72

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 48.8 bits (116), Expect = 4e-08
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV----HTPGVAADLSH 79
          KV V GA+G +G      +    + D +   DI      T G AAD +H
Sbjct: 2  KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH 50

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 45.7 bits (108), Expect = 5e-07
 Identities = 9/51 (17%), Positives = 19/51 (37%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMVAGASGGIGQPLSLL 52
          V GA+G +G      +    + D +   DI + +    G +      ++  
Sbjct: 5  VVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYD 55

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 48.9 bits (116), Expect = 5e-08
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPL-----VDHLSLYDIVHTPGVAADLSHIESKA 84
          +V+V GA+G I   L   +    +        L L DI    GV   +       
Sbjct: 5  RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDC 59

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 2  VAGASGGIGQPLSLLLKQSPL-----VDHLSLYDINNAKVMVAG 40
          V GA+G I   L   +    +        L L DI     ++ G
Sbjct: 8  VTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDG 51

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 48.1 bits (114), Expect = 7e-08
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 35  KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAFNGA 92
           K+ V GA G +G  L+    Q  +   + L DI          D+ H  S     + +G+
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 93  DQLKGLNPTDV 103
           D  +     D+
Sbjct: 62  DDPEICRDADM 72

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMV 38
          V GA G +G  L+    Q  +   + L DI   +V  
Sbjct: 6  VIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEA 41

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTP--GVAADLSH 79
          KV + GA G +G   +  +      + L L D+      G A D++H
Sbjct: 3  KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH 48

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVM 37
          + GA G +G   +  +      + L L D+   K +
Sbjct: 6  IIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAI 40

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPLV--DHLSLYDIVHTPGVAADLSHIESKAHVQAFNGA 92
          +V V GA+G IG  L   +    ++  D   +  ++  P     L  +  +    AF   
Sbjct: 6  RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 93 DQLKG 97
            L+ 
Sbjct: 66 AGLEA 70

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 21/125 (16%), Positives = 40/125 (32%), Gaps = 12/125 (9%)

Query: 31  INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQAFN 90
            N+ KV++ G  G +G   +  + Q  + +   + D+V        L         QAF 
Sbjct: 3   PNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDL----EDAQAFT 57

Query: 91  GADQLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVK 150
              ++     +D         A + +I   +   P  S   D +      +      VV 
Sbjct: 58  APKKIYSGEYSDC------KDADLVVITAGAPQKPGES-RLDLVNKNLNILSSIVKPVVD 110

Query: 151 AKAGA 155
           +    
Sbjct: 111 SGFDG 115

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 5/38 (13%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMVA 39
          + G  G +G   +  + Q  + +   + D+   +    
Sbjct: 10 LVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGD 46

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 42.0 bits (98), Expect = 9e-06
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 4/78 (5%)

Query: 35  KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQA-FNG 91
           K+ V GA G +G   +  L +  L   L L D+V     G A D+              G
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 92  ADQLKGLNPTDVNVPVIG 109
           ++       +D+ +   G
Sbjct: 61  SNDYADTANSDIVIITAG 78

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMVAG 40
          V GA G +G   +  L +  L   L L D+         
Sbjct: 5  VIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKA 42

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTP-GVAADLSH 79
          K+ + GA G +G   +  L    L D + L  +   P G A DL  
Sbjct: 3  KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYE 47

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTP--GVAADLSH 79
          ++  K+ V G  G +G   ++ +    L D L+L D       G A DL H
Sbjct: 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQH 66

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKV 36
          V G  G +G   ++ +    L D L+L D +  K+
Sbjct: 24 VVGV-GDVGMACAISILLKGLADELALVDADTDKL 57

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH 69
          KV + GASG +G   +LLL + P +  L L    H
Sbjct: 2  KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH 36

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMVAG 40
          + GASG +G   +LLL + P +  L L    ++   + G
Sbjct: 5  IIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEG 43

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 1/52 (1%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHV 86
          K+ + G  G +G   +  L        + L D+         L  I      
Sbjct: 2  KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFT 52

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMV 38
          + G  G +G   +  L        + L D++  +   
Sbjct: 5  IVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEG 40

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 31  INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV--HTPGVAADLSHIESKAHVQA 88
           + N K+ V G  G +G   ++ +    L D L+L D++     G   DL H         
Sbjct: 18  VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPK 76

Query: 89  FNGADQLKGLNPTDVNVPVIGGH 111
                       + + V   G  
Sbjct: 77  IVADKDYSVTANSKIVVVTAGVR 99

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVM 37
          V G  G +G   ++ +    L D L+L D+   K+ 
Sbjct: 25 VVGV-GQVGMACAISILGKSLADELALVDVLEDKLK 59

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTP--GVAADLSH 79
          K+   GA G +G   +     +  VD ++L DI      G A DL+H
Sbjct: 2  KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAH 47

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVM 37
            GA G +G   +     +  VD ++L DI     +
Sbjct: 5  FVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAV 39

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAFN 90
           AK+++ G+ G IG  ++ L+ Q  L D + L+DIV     G A D SH    A+     
Sbjct: 3  KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKV 60

Query: 91 GADQ 94
              
Sbjct: 61 SGSN 64

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 32  NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTP--GVAADLSHIESKAHVQAF 89
             A+V+V GA G +G      L    + D + L D   +   G A D +H +  A     
Sbjct: 5   GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVD 63

Query: 90  NGADQLKGLNPTDV 103
                       D+
Sbjct: 64  IWHGDYDDCRDADL 77

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 2  VAGASGGIGQPLSLLLKQSPLVDHLSLYDINNAKVMV 38
          V GA G +G      L    + D + L D N +K + 
Sbjct: 11 VIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIG 46

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 37.4 bits (86), Expect = 5e-04
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 35  KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTP-GVAADLSHIESKAHVQAFNGAD 93
           KV + G+ G IG  +  L     L D +    +   P G A DLSH+ S         A+
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE 67

Query: 94  QLKGLNPTDVNVPVIGGHAGITIIP 118
                  T  +  ++   AG+T +P
Sbjct: 68  YSYEAALTGADCVIVT--AGLTKVP 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	100.0
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	100.0
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	100.0
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.98
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.98
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.97
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.97
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.97
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.97
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.97
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.97
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.97
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.97
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.97
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.96
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.96
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.96
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.95
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	99.44
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.43
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	99.43
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	99.42
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.41
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	99.4
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	99.39
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.39
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.37
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	99.32
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.32
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.31
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.28
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.22
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.16
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.15
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.14
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.08
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.95
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	98.87
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.44
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.24
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	98.16
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.16
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.03
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.99
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.97
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.92
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.89
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.86
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.71
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.66
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.62
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.61
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.57
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.56
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.55
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.5
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.44
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.43
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.43
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.39
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.39
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.38
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.38
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.33
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.29
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	96.27
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.13
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.12
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.11
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.04
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.02
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.0
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.96
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.95
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.89
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.84
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.81
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.8
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	95.76
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.72
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.71
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	95.71
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.65
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.65
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.6
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.59
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	95.58
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.49
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.47
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	95.47
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	95.44
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	95.43
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	95.43
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.4
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.3
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.3
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.22
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.2
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.15
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.15
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.14
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.05
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.0
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.83
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.79
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	94.77
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	94.75
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	94.72
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.7
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	94.65
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.64
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.54
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.54
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	94.52
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.5
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	94.48
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	94.41
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.4
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.38
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.33
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	94.33
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	94.22
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.19
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.12
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.11
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	94.04
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.0
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.98
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	93.94
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.88
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	93.85
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.79
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.79
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.75
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.65
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	93.57
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	93.57
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	93.56
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.56
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.5
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.32
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.28
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	93.28
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	93.15
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	93.12
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.06
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.06
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.03
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.02
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.99
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.78
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.78
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	92.69
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.65
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.57
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.52
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	92.49
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	92.44
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	92.29
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.26
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	92.24
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.22
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	92.18
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.01
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	91.96
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	91.87
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.83
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.83
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.69
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	91.45
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	91.31
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.95
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	90.92
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	90.89
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.77
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.61
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	90.59
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	90.55
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.52
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.52
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	90.39
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.34
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	90.31
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.23
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	90.21
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.19
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.18
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	90.06
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.02
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	89.91
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	89.91
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.86
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	89.85
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	89.82
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.72
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.71
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	89.67
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	89.57
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	89.56
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.55
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	89.4
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	89.39
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.37
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	89.33
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	89.23
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.22
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	89.16
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	89.06
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.04
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.99
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	88.97
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	88.82
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	88.81
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	88.72
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.69
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	88.61
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	88.57
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	88.57
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	88.55
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	88.5
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	88.43
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	88.4
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	88.04
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	88.04
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.04
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	87.8
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	87.74
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.73
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.68
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	87.67
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	87.61
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	87.53
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	87.46
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	87.45
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.45
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	87.43
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.33
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	87.33
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	87.29
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	87.21
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.14
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	87.13
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	87.11
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	87.07
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.97
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.91
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	86.86
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	86.66
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	86.52
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	86.48
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	86.46
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	86.45
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	86.35
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	86.35
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	86.15
d1vjta2	278	Putative alpha-glucosidase TM0752 {Thermotoga mari	85.73
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.65
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	85.62
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	85.48
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	85.2
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	85.09
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.06
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	84.94
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	84.9
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	84.87
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	84.61
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	84.59
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	84.55
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	84.55
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	84.54
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	84.2
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	84.11
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	84.02
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.72
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	83.57
d1obba2	308	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	83.26
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	83.17
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	82.95
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	82.93
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	82.88
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	82.74
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.03
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	82.0
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	81.99
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	81.91
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	81.68
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	81.6
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	81.42
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	81.23
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	80.99
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	80.82
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.61
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	80.39
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	80.01

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.7e-36  Score=245.46  Aligned_cols=132  Identities=23%  Similarity=0.325  Sum_probs=119.4

Q ss_pred             CCCCCCe-eEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhc
Q psy14621         97 GLNPTDV-NVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQ  175 (248)
Q Consensus        97 ~v~p~~V-~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~  175 (248)
                      ++.+.++ ++|||||| ||||||+||.++.-.   +.++++|.+++|++|++|++   +||+|+||||+++++|+++|+.
T Consensus        15 ~~~~~~v~~a~ViGeH-Gds~vp~~S~~~i~g---~~~~~~i~~~v~~~g~eIi~---~kG~t~~gia~a~~~iv~aIl~   87 (152)
T d1ojua2          15 NAGARNIRRAWIIGEH-GDSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIK---RKGATIFGPAVAIYRMVKAVVE   87 (152)
T ss_dssp             HTTCBSCCCCCEEBCS-STTCEECGGGCCCBS---CCCHHHHHHHHHTTHHHHHH---HHSSCCHHHHHHHHHHHHHHHT
T ss_pred             ccCCCCcceeEEEecC-CCccccccccccccC---ccchhHhHHHHHHHHHHhhh---hccceeccHHHHHHHHHHHHHh
Confidence            4567777 99999999 999999999987321   22467899999999999999   4899999999999999999999


Q ss_pred             ccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        176 GLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       176 ~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                         |+++++|+| |++++|| +++|+|+||++|++|++ ++++ +||++|+++|++|++.||+.++.
T Consensus        88 ---d~~~v~pvs~~l~geyG~~dv~lsvP~vig~~Gve-i~~l-~L~~~E~~~l~~Sa~~ik~~i~~  149 (152)
T d1ojua2          88 ---DTGEIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRERLEE  149 (152)
T ss_dssp             ---TCCCEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---cCCCceeeeEEeccccCCCCEEEEeEEEECCCceE-EEcC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence               999999998 9999999 89999999999999995 8899 69999999999999999998875

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=100.00  E-value=4.7e-35  Score=240.32  Aligned_cols=142  Identities=29%  Similarity=0.466  Sum_probs=132.1

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR  168 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~  168 (248)
                      +++|++|++|+++||||| |++|||+||+++    |+.+ +++..++++.++++++|++|++++ +||+++|++|+++++
T Consensus        15 ~~l~v~~~~V~~~ViG~H-g~~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kgs~~~a~a~a~~~   92 (164)
T d1uxja2          15 MEAGVSVKDVQAMLMGGH-GDEMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPAAATAQ   92 (164)
T ss_dssp             HHHTCCGGGEEECCEECS-GGGEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCCHHHHHHHHH
T ss_pred             HHHCcCHHHeEEEEEcCC-CCceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcCcccchHHHHHHH
Confidence            578999999999999999 999999999998    5544 566778999999999999999876 799999999999999


Q ss_pred             HHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        169 FAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       169 iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      |+++|+.   +++.++|++ +++++|| +++|||+||++|++||++++++ +||++|+++|++|++.|+++++..
T Consensus        93 i~~~i~~---~~~~~~~~~~~~~g~ygi~~~~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~lk~~i~~l  163 (164)
T d1uxja2          93 MVEAVLK---DKKRVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATLDTL  163 (164)
T ss_dssp             HHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhC---CCCceeeeeeeeccccCCCCceEEECeEEeCCeeEEEeCC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999   899999998 9999998 8999999999999999999999 699999999999999999998764

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=8.9e-35  Score=238.51  Aligned_cols=141  Identities=25%  Similarity=0.475  Sum_probs=130.9

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGAR  168 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~  168 (248)
                      ++++++|++|++|||||| |+||||+||+++    |+.+ ++++.++++.++++++|++|++++ |||+|+|++|.++.+
T Consensus        15 ~~l~v~~~~V~~~ViG~H-g~s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kgsa~~a~~~~~~~   92 (163)
T d1guza2          15 MELGVSMQDINACVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQGSAFYAPASSVVE   92 (163)
T ss_dssp             HHHTCCGGGEECCEEECS-GGGEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCCHHHHHHHHH
T ss_pred             HHHCcCHHHeEEEEEcCC-CCCcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCCCcchhHHHHHHH
Confidence            588999999999999999 999999999998    4444 667778899999999999999875 799999999999999


Q ss_pred             HHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        169 FAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       169 iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      ++++++.   +++.++|++ +++++|| +++|||+||++|++|+++++++ +||++|+++|++|++.|++.++.
T Consensus        93 ~~~~i~~---~~~~~~~~~~~~~~~~g~~~~~~s~P~~lg~~Gv~~i~~l-~Ls~~E~~~l~~sa~~l~~~i~~  162 (163)
T d1guza2          93 MVESIVL---DRKRVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENCKM  162 (163)
T ss_dssp             HHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHheec---cCCCEEEEeeeeccccCCCCcEEEEeeEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence            9999999   899999998 9999998 8999999999999999999999 69999999999999999988764

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=100.00  E-value=1.3e-33  Score=232.35  Aligned_cols=145  Identities=21%  Similarity=0.362  Sum_probs=134.3

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cC------CCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PS------VSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMA  163 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~------~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA  163 (248)
                      +++|++|++|+++||||| |+||||+||+++    |+      ..++.+++.++.++++.+++++++   +||+++|++|
T Consensus        14 ~~l~v~~~~V~~~ViG~H-g~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~k~s~~~a~a   89 (171)
T d1ez4a2          14 KQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGATFYGIG   89 (171)
T ss_dssp             HHHTCCGGGEECCEESSS-SSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHH
T ss_pred             HHHCcCHHHeEEEEEccC-CCcccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH---hhhhHhHHHH
Confidence            578999999999999999 999999999998    22      125677788999999999999998   5789999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      .++.+++++|+.   +++.++|++ +++++|| +++|||+||++|++||++++++ +||++|+++|++|++.|++.++++
T Consensus        90 ~~~~~~~~~i~~---~~~~~~~~~~~~~~~~g~~~~~~S~Pv~lg~~Gv~~v~~l-~Ls~~E~~~l~~s~~~l~~~i~~~  165 (171)
T d1ez4a2          90 TALMRISKAILR---DENAVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKVLNDG  165 (171)
T ss_dssp             HHHHHHHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---cCCceEEEEEeeccccCccceeeeEEEEEcCCcEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   899999998 9999998 8999999999999999999999 699999999999999999999999


Q ss_pred             hhhhh
Q psy14621        242 EEFVA  246 (248)
Q Consensus       242 l~~~~  246 (248)
                      ++.++
T Consensus       166 l~~l~  170 (171)
T d1ez4a2         166 LAELE  170 (171)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98875

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=3e-33  Score=230.29  Aligned_cols=139  Identities=21%  Similarity=0.394  Sum_probs=127.5

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCC---------CCChHHHHHHHHHHhhccceeeeccCCCCchhH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSV---------SFPDDQLKALTGRIQEAGTEVVKAKAGAGSATL  160 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~---------~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~  160 (248)
                      +++|++|++|+++||||| |++|||+||+++    |+.         .++...++++.++++++|++|++   +||+|+|
T Consensus        14 ~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~---~kg~t~~   89 (170)
T d1llda2          14 QQTGVNVKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---GKGATNY   89 (170)
T ss_dssp             HHHTCCGGGEECCEEBSS-STTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHT---SCCSCCH
T ss_pred             HHHCcCHHHeEEEEEcCC-CCCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhHHHh---hhccchh
Confidence            578999999999999999 899999999997    332         14566788999999999999999   5889999


Q ss_pred             HHHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621        161 SMAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI  238 (248)
Q Consensus       161 siA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i  238 (248)
                      ++|.++++++++++.   |++.+++++ +++++|| +++|||+||++|++||++++++ +||++|+++|++|++.||+.+
T Consensus        90 ~~a~~~~~~~~~i~~---~~~~~~~~~~~~~~~~g~~~i~~s~P~~lg~~Gv~~i~~l-~L~~~E~~~l~~sa~~lk~~~  165 (170)
T d1llda2          90 AIGMSGVDIIEAVLH---DTNRILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELAALKRSAETLKETA  165 (170)
T ss_dssp             HHHHHHHHHHHHHHT---TCCEEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHc---CCCceeeeeccccCccCCCCeeEeeccEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999   899999988 9999998 8999999999999999999999 699999999999999999887


Q ss_pred             HH
Q psy14621        239 AK  240 (248)
Q Consensus       239 ~~  240 (248)
                      ++
T Consensus       166 ~~  167 (170)
T d1llda2         166 AQ  167 (170)
T ss_dssp             HT
T ss_pred             HH
Confidence            54

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=1.4e-33  Score=232.25  Aligned_cols=140  Identities=19%  Similarity=0.328  Sum_probs=127.2

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC--------CChHHHHHHHHHHhhccceeeeccCCCCchhHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS--------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLS  161 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~--------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~s  161 (248)
                      +++|++|++|+++||||| |+||||+||+++    |+.+        ++.++++++.++++++++++++   ++|+++|+
T Consensus        14 ~~lgv~~~~V~~~ViG~H-g~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~s~~~a   89 (169)
T d1y6ja2          14 EKLGVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---NKGATYYG   89 (169)
T ss_dssp             TTTTCCTTTEECCEEBCS-SSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHH---HTSCCCHH
T ss_pred             HHhCcCHHHceEEEEccC-CCCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhhhh---hhhhhhhH
Confidence            588999999999999999 999999999997    5443        2344578999999999999999   57899999


Q ss_pred             HHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q psy14621        162 MAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIA  239 (248)
Q Consensus       162 iA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~  239 (248)
                      +|.++++++++++.   |++.++|++ |++++|| +++|||+||++|++||++++++ +||++|+++|++|++.|++.++
T Consensus        90 ~a~~~~~~~~~i~~---~~~~~~~~~~~~~g~yg~~~i~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~l~~s~~~lk~~~~  165 (169)
T d1y6ja2          90 IAVSINTIVETLLK---NQNTIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAEQVKKVLN  165 (169)
T ss_dssp             HHHHHHHHHHHHHH---TCCCEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc---CCCCceeeeeeeccccCCcccceeeeeEEcCCcEEEEecC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999   999999998 9999999 8999999999999999999999 6999999999999999999998


Q ss_pred             HH
Q psy14621        240 KG  241 (248)
Q Consensus       240 ~~  241 (248)
                      ++
T Consensus       166 ~v  167 (169)
T d1y6ja2         166 EV  167 (169)
T ss_dssp             HC
T ss_pred             Hh
Confidence            74

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=4.7e-33  Score=231.42  Aligned_cols=150  Identities=21%  Similarity=0.260  Sum_probs=130.5

Q ss_pred             hhcCCCCCCeeEeEE-eccCCCcccccccCcc----cCCC-------CChHHHHHHHHHHhhccceeeeccCCCCchhHH
Q psy14621         94 QLKGLNPTDVNVPVI-GGHAGITIIPLISQAT----PSVS-------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLS  161 (248)
Q Consensus        94 ~~l~v~p~~V~~~Vi-GeHsGds~vp~wS~a~----p~~~-------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~s  161 (248)
                      +++||+|++|+++|| ||| |++|||+||+++    |+.+       .+....+++.+++++++++|+++|  +++++|+
T Consensus        14 ~~l~V~~~~V~~~vI~GeH-G~s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~~--~~ss~~~   90 (179)
T d5mdha2          14 LKLGVTSDDVKNVIIWGNH-SSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR--KLSSAMS   90 (179)
T ss_dssp             HHHTCCGGGEECCEEEBCS-STTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHHHH--SSCCCHH
T ss_pred             HHHCcCHHHcEEEEEEEcC-CCcccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhhhhcc--CcchHHH
Confidence            688999999998766 999 999999999998    4422       233457789999999999999975  6788999


Q ss_pred             HHHHHHHHHHHHhcccCCCCeEEEee-EecC-CCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q psy14621        162 MAYAGARFAFSLIQGLKGESNVIECA-YVKS-DVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKN  237 (248)
Q Consensus       162 iA~a~~~iv~aIl~~l~~~~~il~~s-~~~g-~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~  237 (248)
                      +|.|+++++++|+.+. ++..+++++ +.++ +||  +++|||+||++|++||++++++ +||++|+++|++|++.|+++
T Consensus        91 ~a~a~~~~~~~i~~~~-~~~~~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l-~L~~~E~~~l~~Sa~~L~~~  168 (179)
T d5mdha2          91 AAKAICDHVRDIWFGT-PEGEFVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSREKMDLTAKELAEE  168 (179)
T ss_dssp             HHHHHHHHHHHHHHCC-CTTCCEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc-ccCCceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999833 244667776 7787 587  7999999999999999999999 69999999999999999999


Q ss_pred             HHHHhhhhhcC
Q psy14621        238 IAKGEEFVAKS  248 (248)
Q Consensus       238 i~~~l~~~~~~  248 (248)
                      ++.++++|.+|
T Consensus       169 ~~~~~~~l~~~  179 (179)
T d5mdha2         169 KETAFEFLSSA  179 (179)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHhccC
Confidence            99999999875

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.98  E-value=1.7e-32  Score=226.51  Aligned_cols=146  Identities=27%  Similarity=0.452  Sum_probs=128.3

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCC------CCChHHHHHHHHHHhhccceeeeccCCCCchhHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSV------SFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMA  163 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~------~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA  163 (248)
                      ++++|+|++|++|||||| |+||||+||+++    |+.      .....+..++...++.++.+++..+ +||+|+|++|
T Consensus        15 ~~l~v~~~~V~~~ViG~H-g~t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~gst~~~~a   92 (174)
T d1pzga2          15 DALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQGSAYYAPA   92 (174)
T ss_dssp             HHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSCCCHHHH
T ss_pred             HHhCcCHHHcEEEEEccC-CCccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEeeee-cccchhhhhH
Confidence            688999999999999999 999999999997    321      2445567778888888888887765 7899999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      .++++++++|+.   |++.++|++ +++++|| +++|||+||+||++||++++++ +||++|+++|++|++.|++..+. 
T Consensus        93 ~a~~~~~~~i~~---~~~~~~~~s~~~~~~yGi~~v~~s~Pv~ig~~Gi~~v~~l-~l~~~E~~~l~~s~~~l~~~~~~-  167 (174)
T d1pzga2          93 ASAVAMATSFLN---DEKRVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQKSVDDVMALNKA-  167 (174)
T ss_dssp             HHHHHHHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhhcc---cCCceEEeeeccccccCCCCceeeeeeEEcCCcEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHH-
Confidence            999999999999   899999998 8899999 7899999999999999999999 69999999999999999986654 


Q ss_pred             hhhhh
Q psy14621        242 EEFVA  246 (248)
Q Consensus       242 l~~~~  246 (248)
                      ++.|+
T Consensus       168 v~~l~  172 (174)
T d1pzga2         168 VAALQ  172 (174)
T ss_dssp             HHHHC
T ss_pred             HHhcc
Confidence            44444

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.98  E-value=1.2e-32  Score=225.83  Aligned_cols=139  Identities=29%  Similarity=0.373  Sum_probs=127.1

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cC------CCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PS------VSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMA  163 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~------~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA  163 (248)
                      +++|++|++|+++||||| |+||||+||+++    |+      ....++++.++.++++++++++++   +||+++|++|
T Consensus        14 ~~lgv~~~~V~~~ViG~H-g~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~a~a   89 (165)
T d1t2da2          14 QKLNVCPRDVNAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVN---LHASPYVAPA   89 (165)
T ss_dssp             HHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHH---HTSSCCHHHH
T ss_pred             HHHCcCHHHeEEEEEcCC-CCCcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhh---hccceeechh
Confidence            578999999999999999 899999999986    22      125566788999999999999999   5789999999


Q ss_pred             HHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      .++++++++++.   +.+.++|++ +++++|| +++|||+||+||++||++++++ +||++|+++|++|+++|++.++.
T Consensus        90 ~a~~~~~~~i~~---~~~~~~~~~v~~~g~yg~~~v~~s~Pv~lg~~Gv~~i~~l-~L~~~E~~~L~~s~~~lk~~~~~  164 (165)
T d1t2da2          90 AAIIEMAESYLK---DLKKVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDEAIAETKRMKAL  164 (165)
T ss_dssp             HHHHHHHHHHHT---TCCEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh---ccccceeeeeccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999   899999998 9999998 8999999999999999999999 69999999999999999987654

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=5e-32  Score=223.03  Aligned_cols=143  Identities=29%  Similarity=0.407  Sum_probs=130.4

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cC-------CCCChHHHHHHHHHHhhccceeeeccCCCCchhHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PS-------VSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSM  162 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~-------~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~si  162 (248)
                      +++|++|++|++|||||| |+||||+||+++    |+       ..++.+..+++.+++++++++|++   +||+++|++
T Consensus        15 ~~l~v~~~~V~~~ViG~H-g~t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~   90 (172)
T d1a5za2          15 QHCGFSPRSVHVYVIGEH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE---RKGATHYAI   90 (172)
T ss_dssp             HHHTCCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHH---HHSCCCHHH
T ss_pred             HHHCcCHHHeEEEEEecC-CCCcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEee---ccccchhhH
Confidence            688999999999999999 999999999997    32       125667788999999999999998   478999999


Q ss_pred             HHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        163 AYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       163 A~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      |.++++++.+++.   +++.+++++ +++++|+ +++|||+||++|++||++++++ +||++|+++|++|++.||+.+++
T Consensus        91 a~a~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~v~~s~P~~lg~~Gv~~v~~l-~Ls~~E~~~l~~sa~~lk~~i~~  166 (172)
T d1a5za2          91 ALAVADIVESIFF---DEKRVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKNAINE  166 (172)
T ss_dssp             HHHHHHHHHHHHT---TCCEEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh---hcccceeeecccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999   889999988 9899888 8999999999999999999999 69999999999999999999998


Q ss_pred             Hhhh
Q psy14621        241 GEEF  244 (248)
Q Consensus       241 ~l~~  244 (248)
                      ..+.
T Consensus       167 l~~~  170 (172)
T d1a5za2         167 ITAE  170 (172)
T ss_dssp             HHTS
T ss_pred             Hhhc
Confidence            7654

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=6.5e-32  Score=222.03  Aligned_cols=154  Identities=69%  Similarity=1.114  Sum_probs=132.3

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSL  173 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aI  173 (248)
                      ++|+++|++|++||||||+|++|+|.||++.+-..++.++++++.+++++++++|++.|.+++++.+++++++++++.++
T Consensus        15 ~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~~~~~~a~~~~~~~i   94 (169)
T d1mlda2          15 ELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSL   94 (169)
T ss_dssp             HHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHH
T ss_pred             HHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHhHHHHHHHHHHHHHh
Confidence            68999999999999999977788887888775555888899999999999999999987566788999999999999999


Q ss_pred             hcccCCCCeEEEeeEecCCCCCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621        174 IQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK  247 (248)
Q Consensus       174 l~~l~~~~~il~~s~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~  247 (248)
                      +.++++...+.++++....+.+++|||+||+||++|+++++++|+||++|+++|++|+++||+.++++++|++.
T Consensus        95 ~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~~s~~~lk~~I~~g~~fi~~  168 (169)
T d1mlda2          95 VDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKASIKKGEEFVKN  168 (169)
T ss_dssp             HHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            87655666666665422111268999999999999999999985699999999999999999999999999874

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.97  E-value=3.7e-32  Score=228.16  Aligned_cols=149  Identities=20%  Similarity=0.170  Sum_probs=126.8

Q ss_pred             hhcCCCCCCeeE-eEEeccCCCcccccccCcc----cCCCC-Ch--HHHHHHHHHHhhccceeeeccCCCCchhHHHHHH
Q psy14621         94 QLKGLNPTDVNV-PVIGGHAGITIIPLISQAT----PSVSF-PD--DQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYA  165 (248)
Q Consensus        94 ~~l~v~p~~V~~-~ViGeHsGds~vp~wS~a~----p~~~~-~~--~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a  165 (248)
                      +++||+|++|+. +||||| ||||||+||+++    |+.++ .+  ...+++.+++++++++|++.|  ++++++++|.|
T Consensus        14 ~~l~V~~~~V~~~iI~GeH-Gds~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k--g~s~~~s~A~A   90 (188)
T d7mdha2          14 LKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW--GRSSAASTAVS   90 (188)
T ss_dssp             HHTTSCGGGEECCEEEBCS-STTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT--SSCCHHHHHHH
T ss_pred             HHHCcCHHHeeEEEEEEcC-CCcEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh--cccchhhHHHH
Confidence            688999999975 577999 999999999998    55553 22  236889999999999999985  56778889999


Q ss_pred             HHHHHHHHhcccCCCCeEEEee-EecCC-CC--CceEEEeeEEEcCCcEEEEe-cCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        166 GARFAFSLIQGLKGESNVIECA-YVKSD-VT--EASYFSTPVHLGKNGIEKNL-GLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       166 ~~~iv~aIl~~l~~~~~il~~s-~~~g~-yg--~~v~~s~Pv~lg~~Gv~~i~-~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      +++++++|+.+. +...++|++ +++|+ ||  +++|||+||++|++|+++++ ++ +||++|+++|++|+++|+++.+.
T Consensus        91 ~~~~~~ai~~~~-~~~~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l-~L~~~e~~~l~~S~~eL~~e~~~  168 (188)
T d7mdha2          91 IADAIKSLVTPT-PEGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDV-SNDDFLWERIKKSEAELLAEKKC  168 (188)
T ss_dssp             HHHHHHHHHSCC-CTTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-CCCceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999842 234678887 88886 98  69999999999999998887 69 69999999999999999999888


Q ss_pred             Hhhhhhc
Q psy14621        241 GEEFVAK  247 (248)
Q Consensus       241 ~l~~~~~  247 (248)
                      +..+|.+
T Consensus       169 v~~Llg~  175 (188)
T d7mdha2         169 VAHLTGE  175 (188)
T ss_dssp             THHHHTS
T ss_pred             HHHhhcc
Confidence            7776654

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=1.3e-31  Score=219.70  Aligned_cols=142  Identities=20%  Similarity=0.407  Sum_probs=121.3

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCCCC---hHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFP---DDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAG  166 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~~---~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~  166 (248)
                      +++|++|++|+++||||| |++|||+||+++    |+.++.   ....+++.++++++++++++   .||+++|++|.++
T Consensus        16 ~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~~~~~a~~~   91 (168)
T d1hyea2          16 KFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---LKGGSEFGPAAAI   91 (168)
T ss_dssp             HHHTCCGGGEECCEEECS-STTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CCHHHHH
T ss_pred             HHHCcCHHHeEEEEEcCC-CCccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHH---hccCccccchhhh
Confidence            688999999999999999 999999999997    443322   22367899999999999998   4788999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy14621        167 ARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE  243 (248)
Q Consensus       167 ~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~  243 (248)
                      +.++++++.   +++.+++++ ++.++|+  +++|||+||++|++||++++++ +||++|+++|++|++.|++.++++.+
T Consensus        92 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~l~~Sa~~lk~~~~~~k~  167 (168)
T d1hyea2          92 LNVVRCIVN---NEKRLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYCEEVKN  167 (168)
T ss_dssp             HHHHHHHHT---TCCEEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHhhhc---cCCCeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999   888888876 8888874  7999999999999999999999 69999999999999999999988754

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.4e-31  Score=217.91  Aligned_cols=152  Identities=53%  Similarity=0.821  Sum_probs=128.2

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccc-cCcccCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLI-SQATPSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFS  172 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~w-S~a~p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~a  172 (248)
                      +++|++|++|++||+||| |++++++| |++.+ ..+++.+++++.+++|+++++|++.+.++|++.||+|.++++++++
T Consensus        15 ~~l~v~~~~V~~~ViGgh-g~~~~~p~~s~~~~-~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~~~~a~a~~~~~~~   92 (167)
T d2cmda2          15 ELKGKQPGEVEVPVIGGH-SGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLS   92 (167)
T ss_dssp             HHHTCCGGGCCCCEEECS-STTTEEECGGGCTT-CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHH
T ss_pred             HHHCcCHHHeEEEEEEcC-CCceEeeecccccC-CCCcHHHHHHHHHHHHhhhhhhhhhhccCcchHHHHHHHHHHHHHH
Confidence            688999999999999999 56555556 54443 3578888999999999999999998767899999999999999999


Q ss_pred             HhcccCCCCeEEEeeEecCCCCCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy14621        173 LIQGLKGESNVIECAYVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFVAK  247 (248)
Q Consensus       173 Il~~l~~~~~il~~s~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~~~  247 (248)
                      |+.++++...+..+++...++.+++|||+||++|++|+++++++++|+++|+++|++|+++||+.++++++|+++
T Consensus        93 i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l~~s~~~lk~~I~~~~~fi~~  167 (167)
T d2cmda2          93 LVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDIALGQEFVNK  167 (167)
T ss_dssp             HHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            998655554444444443332368999999999999999999985699999999999999999999999999875

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.97  E-value=2.1e-31  Score=217.59  Aligned_cols=141  Identities=20%  Similarity=0.298  Sum_probs=125.5

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCCCC---hHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSFP---DDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAG  166 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~~---~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~  166 (248)
                      +++|++|++|+++||||| |++|||+||+++    |+.++.   +..++++.+++++++++|++   +||+++|++|.++
T Consensus        15 ~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~---~kg~~~~~~a~~~   90 (163)
T d1hyha2          15 EAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLN---GKGYTSYGVATSA   90 (163)
T ss_dssp             HHHTCCGGGCBCCEEBCT-TTTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHH---HHSSCCHHHHHHH
T ss_pred             HHhCcCHHHeEEEEEcCC-CCcCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHH---HHHhHHHhHHHHh
Confidence            688999999999999999 999999999998    554432   23478999999999999999   4789999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEee-EecCCCCCceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14621        167 ARFAFSLIQGLKGESNVIECA-YVKSDVTEASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEEFV  245 (248)
Q Consensus       167 ~~iv~aIl~~l~~~~~il~~s-~~~g~yg~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~~~  245 (248)
                      .+++++++.   +++.+++++ |...   .++|||+||++|++||++++++ +||++|+++|++|++.|++.++++++.|
T Consensus        91 ~~~~~~~~~---~~~~~~~~s~~~~~---~~~~~s~Pv~ig~~Gv~~v~~l-~Ls~~E~~~l~~s~~~l~~~~~~~~~~l  163 (163)
T d1hyha2          91 IRIAKAVMA---DAHAELVVSNRRDD---MGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQRFDEIVDTL  163 (163)
T ss_dssp             HHHHHHHHT---TCCEEEEEEEECTT---TCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHhcC---CccceeeeceecCC---cceEEEeEEEEcCCeEEEEecC-CCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999   888999988 6432   4799999999999999999999 6999999999999999999999998764

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=2.5e-31  Score=217.53  Aligned_cols=141  Identities=23%  Similarity=0.411  Sum_probs=126.8

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCCC-------ChHHHHHHHHHHhhccceeeeccCCCCchhHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVSF-------PDDQLKALTGRIQEAGTEVVKAKAGAGSATLSM  162 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~~-------~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~si  162 (248)
                      +++|++|++|+++||||| |++|||+||+++    |+.++       .....+++.++++.++++|+..   ||+++|++
T Consensus        14 ~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~---~~~s~~~~   89 (168)
T d1ldna2          14 EYFSVAPQNVHAYIIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEK---KGATYYGI   89 (168)
T ss_dssp             HHHTSCGGGEEEEEEBCS-STTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHH
T ss_pred             HHhCcCHHHeEEEEEcCC-CCccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHHHh---hccccchH
Confidence            588999999999999999 999999999997    44331       2334678899999999999884   78999999


Q ss_pred             HHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        163 AYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       163 A~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      +.++.+++++++.   +.+.++|++ +++++|| +++|||+||++|++||++++++ +||++|+++|++|++.|++.+++
T Consensus        90 a~~~~~~~~~~~~---~~~~~~~~~~~~~~~yg~~~v~~s~Pv~lg~~Gv~~v~~l-~Ls~~E~~~L~~s~~~lk~~i~~  165 (168)
T d1ldna2          90 AMGLARVTRAILH---NENAILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATLKSVLAR  165 (168)
T ss_dssp             HHHHHHHHHHHHT---TCCEEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHhhhc---ccceeeeeeeeeccccCCCCeeecceEEEcCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998   888999987 9999998 8999999999999999999999 69999999999999999999988


Q ss_pred             Hh
Q psy14621        241 GE  242 (248)
Q Consensus       241 ~l  242 (248)
                      |+
T Consensus       166 a~  167 (168)
T d1ldna2         166 AF  167 (168)
T ss_dssp             SC
T ss_pred             Hc
Confidence            64

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.97  E-value=1.1e-31  Score=220.79  Aligned_cols=139  Identities=19%  Similarity=0.248  Sum_probs=125.4

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCC--------CCChHHHHHHHHHHhhccceeeeccCCCCchhHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSV--------SFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLS  161 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~--------~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~s  161 (248)
                      +++|++|++|+++||||| |++|||+||+++    |+.        ..+.+..+++.++++++++++++   ++++++|+
T Consensus        16 ~~lgv~~~~V~~~ViG~H-g~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~s~~a   91 (172)
T d1i0za2          16 EKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIK---LKGYTNWA   91 (172)
T ss_dssp             HHHTSCGGGCBCCEEBCS-STTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHHHH---HHSSCCHH
T ss_pred             HHhCcCHHHceEEEEccC-CCcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEeee---cccccchH
Confidence            688999999999999999 899999999997    321        12344578899999999999999   47899999


Q ss_pred             HHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621        162 MAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI  238 (248)
Q Consensus       162 iA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i  238 (248)
                      +|.++++++++++.   +++.++|++ +++++||  +++|||+||++|++||++++++ +||++|+++|++|++.|++.+
T Consensus        92 ~a~~~~~~~~~~~~---~~~~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~~l~~Sa~~l~~~~  167 (172)
T d1i0za2          92 IGLSVADLIESMLK---NLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVAQLKKSADTLWDIQ  167 (172)
T ss_dssp             HHHHHHHHHHHHHT---TCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc---CCCcccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999   899999998 9999998  5899999999999999999999 699999999999999999876


Q ss_pred             HH
Q psy14621        239 AK  240 (248)
Q Consensus       239 ~~  240 (248)
                      +.
T Consensus       168 ~~  169 (172)
T d1i0za2         168 KD  169 (172)
T ss_dssp             TT
T ss_pred             HH
Confidence            54

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.97  E-value=5.9e-33  Score=228.77  Aligned_cols=143  Identities=24%  Similarity=0.417  Sum_probs=128.6

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-------CChHHHHHHHHHHhhccceeeeccCCCCchhHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSM  162 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~si  162 (248)
                      +++|++|++|+++||||| |++|||+||+++    |+.+       ++.+.++++.++++++++++++   +||+++|++
T Consensus        14 ~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~---~kg~~~~a~   89 (172)
T d1llca2          14 EMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKGATFYGI   89 (172)
T ss_dssp             HHSCCCTTSCEEEEEBSS-SSSCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTSS---SSSCTTHHH
T ss_pred             HHhCcCHHHeEEEEEcCC-CCcceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHHH---hhhhhhhhh
Confidence            588999999999999999 999999999997    4432       2233456788999999999999   589999999


Q ss_pred             HHHHHHHHHHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy14621        163 AYAGARFAFSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAK  240 (248)
Q Consensus       163 A~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~  240 (248)
                      |.++++++++++.   +++.++|++ +++++|| +++|||+||++|++|+++++++ +||++|+++|++|+++||+.+++
T Consensus        90 a~~~~~~~~~~~~---~~~~~~~~~~~~~g~ygi~~~~~s~P~~lg~~Gv~~i~~l-~L~~~E~~~l~~s~~~lk~~i~~  165 (172)
T d1llca2          90 ATALARISKAILN---DENAVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKKVLTD  165 (172)
T ss_dssp             HHHHHHHHHHHHH---TCCCCEECCCCCSSSSSCCSSCCBCEEEEETTEEEEECCC-CCTTHHHHHHHTTTTTTTTTTTT
T ss_pred             HHHHHHHHHHHhc---CCCCccceeeeecCccCcccceEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999   889999998 9999999 8999999999999999999999 69999999999999999998887


Q ss_pred             Hhhh
Q psy14621        241 GEEF  244 (248)
Q Consensus       241 ~l~~  244 (248)
                      +++.
T Consensus       166 ~~~~  169 (172)
T d1llca2         166 AFAK  169 (172)
T ss_dssp             TCCC
T ss_pred             HHHh
Confidence            7653

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.97  E-value=6e-31  Score=215.60  Aligned_cols=142  Identities=21%  Similarity=0.271  Sum_probs=123.1

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC-----CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS-----FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAY  164 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~-----~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~  164 (248)
                      ++++++|++|+++||||| |++|||+||+++    |+.+     .......++..++++++++++.   ++|+++|++|.
T Consensus        16 ~~l~v~~~~V~~~ViG~H-g~~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~s~~~a~a~   91 (169)
T d1ldma2          16 ERLGVHSCSCHGWVIGEH-GDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIK---LKGYTSWAIGL   91 (169)
T ss_dssp             HHHTSCGGGCBCCBCBCS-STTCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHH---HHSSCCHHHHH
T ss_pred             HHHCcCHHHeEEEEEcCC-CccchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEec---cccchhhHHHH
Confidence            688999999999999999 899999999997    3321     2333455677788888888887   47899999999


Q ss_pred             HHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        165 AGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       165 a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      ++++++++++.   +++.++|++ +++++||  +++|||+||++|++||++++++ +||++|+++|++|++.|++ +.+.
T Consensus        92 ~~~~~~~~~~~---~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~-~~k~  166 (169)
T d1ldma2          92 SVADLAETIMK---NLCRVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATTLWD-IQKD  166 (169)
T ss_dssp             HHHHHHHHHHT---TCCEEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH-HHHT
T ss_pred             HHhhhhheecC---CCCceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEecC-CCCHHHHHHHHHHHHHHHH-HHHh
Confidence            99999999999   899999998 9999998  5899999999999999999999 6999999999999999985 4444


Q ss_pred             hhh
Q psy14621        242 EEF  244 (248)
Q Consensus       242 l~~  244 (248)
                      ++|
T Consensus       167 lkf  169 (169)
T d1ldma2         167 LKF  169 (169)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            444

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.96  E-value=5.6e-30  Score=207.60  Aligned_cols=140  Identities=24%  Similarity=0.420  Sum_probs=127.6

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcccC---CCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQATPS---VSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFA  170 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~p~---~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv  170 (248)
                      +++|++|++|+++||||| |++|+|+||+++.-   ..+..++..++.++++..++++++   ++|++.+++|.++.+++
T Consensus        16 ~~l~v~~~~V~~~ViG~H-g~~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~s~~~~a~a~~~~~   91 (161)
T d1o6za2          16 EEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---RKGATEWGPARGVAHMV   91 (161)
T ss_dssp             HHHTCCGGGEECCEEECS-STTEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---TTSSCCHHHHHHHHHHH
T ss_pred             HHHCcCHHHeEEEEEeCC-CCceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHH---hhhhhhhHHHHhhHhhh
Confidence            688999999999999999 89999999999822   235677788999999999999988   57899999999999999


Q ss_pred             HHHhcccCCCCeEEEee-EecCCCC-CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy14621        171 FSLIQGLKGESNVIECA-YVKSDVT-EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKG  241 (248)
Q Consensus       171 ~aIl~~l~~~~~il~~s-~~~g~yg-~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~  241 (248)
                      .+++.   +.+.+++++ +++++|+ +++|||+||++|++|+++++++ +||++|+++|++|++.|++.++++
T Consensus        92 ~~~~~---~~~~~~~~~~~~~~~~~~~~i~~S~Pv~ig~~Gv~~v~~l-~l~~~E~~~L~~s~~~L~~~~~~i  160 (161)
T d1o6za2          92 EAILH---DTGEVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQYDKI  160 (161)
T ss_dssp             HHHHT---TCCCEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             Hhhhh---ccccceeecccccccccccCceeeeeeEEcCCCEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHhh
Confidence            99998   888888887 8888887 7999999999999999999999 699999999999999999999874

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.5e-29  Score=207.41  Aligned_cols=137  Identities=24%  Similarity=0.324  Sum_probs=122.1

Q ss_pred             hhcCCCCCCeeEeEEeccCCCcccccccCcc----cCCC--------CChHHHHHHHHHHhhccceeeeccCCCCchhHH
Q psy14621         94 QLKGLNPTDVNVPVIGGHAGITIIPLISQAT----PSVS--------FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLS  161 (248)
Q Consensus        94 ~~l~v~p~~V~~~ViGeHsGds~vp~wS~a~----p~~~--------~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~s  161 (248)
                      +++|++|++|+++||||| |++|+|+||+++    |+.+        ...+..+++..+++..+++++.   .|+++.|+
T Consensus        16 ~~l~v~~~~V~~~ViG~H-s~~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~k~~s~~~   91 (172)
T d2ldxa2          16 EKLGVNPTSCHGWVLGEH-GDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEVLD---MKGYTSWA   91 (172)
T ss_dssp             HHHTCCTTSSCCCEEECS-SSCEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHHHH---HHSSCCHH
T ss_pred             HHhCcCHHHcEEEEEcCC-CCccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeehhh---cccchhHH
Confidence            688999999999999999 899999999998    4422        1223466788999999999988   47899999


Q ss_pred             HHHHHHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q psy14621        162 MAYAGARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNI  238 (248)
Q Consensus       162 iA~a~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i  238 (248)
                      +|.++.+++.+++.   +++.++|++ +++++||  +++|||+||++|++||++++++ +||++|+++|++|++.||+.+
T Consensus        92 ~a~~~~~~~~~~~~---~~~~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~lk~~~  167 (172)
T d2ldxa2          92 IGLSVTDLARSILK---NLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKV-NMTAEEEGLLKKSADTLWNMQ  167 (172)
T ss_dssp             HHHHHHHHHHHHHT---TCCEEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEECC-CCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHhhcC---CCccceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEecC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999998   899999998 8999998  6999999999999999999999 699999999999999998654

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.9e-29  Score=207.71  Aligned_cols=145  Identities=19%  Similarity=0.268  Sum_probs=120.8

Q ss_pred             hhcCCCCCCeeEeE-EeccCCCcccccccCcc----cCCCCChH--HHHHHHHHHhhccceeeeccCCCCchhHHHHHHH
Q psy14621         94 QLKGLNPTDVNVPV-IGGHAGITIIPLISQAT----PSVSFPDD--QLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAG  166 (248)
Q Consensus        94 ~~l~v~p~~V~~~V-iGeHsGds~vp~wS~a~----p~~~~~~~--~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~  166 (248)
                      ++++|+|++|+++| |||| |++|||+||+++    |+.++..+  ...+..++..+.+++++..  .+++++|++|.++
T Consensus        15 ~~l~v~~~~V~~~iI~GeH-G~s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~~a~a~   91 (173)
T d1y7ta2          15 KKTGTGVDRIRRMTVWGNH-SSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQA--RGASSAASAANAA   91 (173)
T ss_dssp             HHHTCCGGGEECCEEEBCS-STTCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHH--HSSCCHHHHHHHH
T ss_pred             HHHCcCHHHcEEEEEEEec-CccEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHH--hccCchhhHHHHH
Confidence            68899999999874 6999 999999999998    55444322  2445555556666677665  4788999999999


Q ss_pred             HHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q psy14621        167 ARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGEE  243 (248)
Q Consensus       167 ~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l~  243 (248)
                      ++++++++.+. |+++++|++ +++|+||  +++|||+||+++++||+.+.++ +||++|+++|++|+++|++.++.+..
T Consensus        92 ~~~~~~~~~~~-~~~~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l-~L~~~E~~~l~~s~~~L~~~~e~vk~  169 (173)
T d1y7ta2          92 IEHIRDWALGT-PEGDWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEITAQELLDEMEQVKA  169 (173)
T ss_dssp             HHHHHHHHTBC-CTTCCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccc-CCCCceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998853 567899998 9999998  7999999999998888888889 69999999999999999999986643

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.95  E-value=6.5e-29  Score=204.02  Aligned_cols=146  Identities=15%  Similarity=0.136  Sum_probs=120.4

Q ss_pred             hhcCCCCCCeeE-eEEeccCCCcccccccCccc----CCC---CChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHH
Q psy14621         94 QLKGLNPTDVNV-PVIGGHAGITIIPLISQATP----SVS---FPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYA  165 (248)
Q Consensus        94 ~~l~v~p~~V~~-~ViGeHsGds~vp~wS~a~p----~~~---~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a  165 (248)
                      +++|++|++|++ +||||| |+|+||+||++++    +.+   ......+++...+++++.+++..+ +++++.++++++
T Consensus        14 ~kl~v~~~~V~~~iI~Geh-G~s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~   91 (171)
T d1b8pa2          14 AKTGKPVSSIEKLFVWGNH-SPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-GVSSAASAANAA   91 (171)
T ss_dssp             HHHTCCGGGEESCEEEBCS-STTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-SSCCHHHHHHHH
T ss_pred             HHHCcCHHHeEEEEEEEcC-CCcEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-hhhhhhhhhHHH
Confidence            688999999987 666999 9999999999983    222   112234556667777777777765 566677777777


Q ss_pred             HHHHHHHHhcccCCCCeEEEee-EecCCCC--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q psy14621        166 GARFAFSLIQGLKGESNVIECA-YVKSDVT--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVPELKKNIAKGE  242 (248)
Q Consensus       166 ~~~iv~aIl~~l~~~~~il~~s-~~~g~yg--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~~I~~~i~~~l  242 (248)
                      +..+.+++..   +.+.++|++ +++|+||  +++|||+||++|++||+.+.++ +||++|+++|++|+++|+++++.+.
T Consensus        92 ~~~~~~~i~~---~~~~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l-~L~~~e~~~l~~s~~~L~~e~~~v~  167 (171)
T d1b8pa2          92 IDHIHDWVLG---TAGKWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGL-SIDAFSQERINVTLNELLEEQNGVQ  167 (171)
T ss_dssp             HHHHHHHHHC---CTTCCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHhC---CCccceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            7778888887   788899998 9999997  7999999999999999999999 6999999999999999999998877


Q ss_pred             hhh
Q psy14621        243 EFV  245 (248)
Q Consensus       243 ~~~  245 (248)
                      +.|
T Consensus       168 ~ll  170 (171)
T d1b8pa2         168 HLL  170 (171)
T ss_dssp             GGG
T ss_pred             Hhc
Confidence            665

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.44  E-value=5.1e-14  Score=113.94  Aligned_cols=54  Identities=28%  Similarity=0.426  Sum_probs=49.0

Q ss_pred             cccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC
Q psy14621         28 LYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES   82 (248)
Q Consensus        28 ~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~   82 (248)
                      ....+++||+|||+ |+||+++||.|+.+++++||+|+|+++  ++|+++||+|+..
T Consensus        15 ~~~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~   70 (160)
T d1i0za1          15 EATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSL   70 (160)
T ss_dssp             CCCCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGG
T ss_pred             cccCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcccc
Confidence            34445679999998 999999999999999999999999997  9999999999874

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=9e-14  Score=112.36  Aligned_cols=51  Identities=29%  Similarity=0.420  Sum_probs=47.7

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES   82 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~   82 (248)
                      .++.||+|||| |+||+++||+|+.+++++||+|+|+++  ++|+++||+|+.+
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~   69 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSL   69 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTT
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcch
Confidence            45579999998 999999999999999999999999998  8999999999875

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.43  E-value=1.1e-13  Score=109.62  Aligned_cols=58  Identities=24%  Similarity=0.400  Sum_probs=48.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC-CeEEEEcC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK-AHVQAFNG   91 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~-~~v~~~~~   91 (248)
                      ++||+|||| |+||+++||+|+++++++||+|+|+++  ++|+++||+|+.+. .+++.+++
T Consensus         1 r~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~   61 (142)
T d1y6ja1           1 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG   61 (142)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC
Confidence            359999998 999999999999999999999999998  89999999998653 34455544

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.42  E-value=4.6e-14  Score=111.98  Aligned_cols=48  Identities=31%  Similarity=0.421  Sum_probs=45.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES   82 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~   82 (248)
                      |||+|||| |+||+++||+|+.+++++||+|+|+++  ++|+++||+|+.+
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~   50 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA   50 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhcc
Confidence            79999998 999999999999999999999999999  8999999999863

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=1.1e-13  Score=110.14  Aligned_cols=58  Identities=59%  Similarity=0.894  Sum_probs=51.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHh-CCCcceEEEEecCC-chhhHhhhcCccCCCeEEEEcC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQ-SPLVDHLSLYDIVH-TPGVAADLSHIESKAHVQAFNG   91 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~-~~l~~elvLiDi~~-a~g~a~DL~~~~~~~~v~~~~~   91 (248)
                      |||+||||+|+||+++||+|+. .++++||+|+|+++ ++|++|||+|+.+++....+.+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~   60 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG   60 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEc
Confidence            7999999779999999999875 58999999999988 8899999999988777666554

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.40  E-value=7e-14  Score=111.55  Aligned_cols=60  Identities=28%  Similarity=0.408  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC--CeEEEEcCc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK--AHVQAFNGA   92 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~--~~v~~~~~~   92 (248)
                      +..||+|||| |+||+++||.|+++++++||+|+|+++  ++|+++||+|+.+.  ..+++++++
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d   68 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD   68 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECC
Confidence            4679999998 999999999999999999999999998  89999999999753  345555543

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.39  E-value=2e-13  Score=108.46  Aligned_cols=48  Identities=29%  Similarity=0.438  Sum_probs=46.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES   82 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~   82 (248)
                      .||+|||| |+||+++||.|+.+++++||+|+|+++  ++|+++||+|+.+
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~   51 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSS   51 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGG
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccc
Confidence            59999998 999999999999999999999999998  9999999999864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.39  E-value=2.5e-13  Score=107.89  Aligned_cols=54  Identities=78%  Similarity=1.153  Sum_probs=49.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEE
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQA   88 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~   88 (248)
                      ||+||||+|+||+++||+|+.+++++||+|+|+++++|+++||+|+.+.+....
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~   55 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKG   55 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEE
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCe
Confidence            999999779999999999999999999999999889999999999987665443

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.37  E-value=1.2e-13  Score=109.99  Aligned_cols=61  Identities=26%  Similarity=0.490  Sum_probs=51.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC-CeEEEEcCch
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK-AHVQAFNGAD   93 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~-~~v~~~~~~d   93 (248)
                      +++||+|||+ |+||+++||.|+++++++||+|+|+++  ++|+++||+|+.+. .....+++++
T Consensus         4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~   67 (146)
T d1ez4a1           4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY   67 (146)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH
Confidence            4679999998 999999999999999999999999998  99999999998752 3334444443

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.32  E-value=3.5e-13  Score=106.87  Aligned_cols=60  Identities=28%  Similarity=0.384  Sum_probs=50.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC----chhhHhhhcCccC-CCeEEEEcCch
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH----TPGVAADLSHIES-KAHVQAFNGAD   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~----a~g~a~DL~~~~~-~~~v~~~~~~d   93 (248)
                      .||+||||+|+||+++||+|+++++++||+|+|++.    ++|++|||+|+.+ +.+.+++++++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~   65 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY   65 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH
Confidence            399999977999999999999999999999999864    7899999999754 44444555544

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.32  E-value=4.8e-13  Score=105.64  Aligned_cols=57  Identities=23%  Similarity=0.379  Sum_probs=49.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC-CCeEEEEcC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES-KAHVQAFNG   91 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~-~~~v~~~~~   91 (248)
                      |||+|||| |+||+++||+|+.+++++||+|+|+++  ++|+++||+|+.+ ..++..+++
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~   60 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG   60 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEEC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCC
Confidence            79999998 999999999999999999999999998  9999999999874 234444444

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.31  E-value=6.9e-13  Score=105.47  Aligned_cols=49  Identities=33%  Similarity=0.527  Sum_probs=45.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC----chhhHhhhcCccC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH----TPGVAADLSHIES   82 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~----a~g~a~DL~~~~~   82 (248)
                      |||+||||+|+||+++||+|+++++++||+|+|+++    ++|+++||+|+.+
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~   53 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALA   53 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhccc
Confidence            799999977999999999999999999999999986    6799999999764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.28  E-value=6.5e-13  Score=105.71  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=50.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC--CCeEEEEcCc
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES--KAHVQAFNGA   92 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~--~~~v~~~~~~   92 (248)
                      +||+|||| |+||+++||.|+++++++||+|+|+++  ++|++|||+|+.+  +.++++.+++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d   63 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND   63 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC
Confidence            69999998 999999999999999999999999998  8999999999964  3344444443

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.22  E-value=6.1e-12  Score=99.17  Aligned_cols=48  Identities=31%  Similarity=0.491  Sum_probs=45.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES   82 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~   82 (248)
                      |||+|||| |+||+++||+|+.+++++||+|+|+++  ++|+++|++|+.+
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~   50 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP   50 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc
Confidence            79999998 999999999999999999999999998  8999999999864

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.16  E-value=6.8e-12  Score=100.43  Aligned_cols=52  Identities=37%  Similarity=0.528  Sum_probs=46.8

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES   82 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~   82 (248)
                      +-++++||+|||| |+||+++||+|+++++. ||+|+|+++  ++|+++||+|+.+
T Consensus         3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~-el~L~D~~~~~~~g~a~Dl~~~~~   56 (154)
T d1pzga1           3 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTS   56 (154)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCCc-eEEEEEeccccchhHHHHHhhhcc
Confidence            3457789999998 99999999999999975 899999998  8999999999863

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.15  E-value=1.4e-11  Score=97.21  Aligned_cols=48  Identities=31%  Similarity=0.418  Sum_probs=44.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES   82 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~   82 (248)
                      ++||+|||| |+||+++||+|++++++ |++|+|+++  ++|+++||+|+.+
T Consensus         1 r~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~   50 (142)
T d1uxja1           1 RKKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASP   50 (142)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhcccc
Confidence            369999998 99999999999999986 799999988  8999999999974

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.14  E-value=1.5e-11  Score=98.05  Aligned_cols=48  Identities=38%  Similarity=0.586  Sum_probs=44.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES   82 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~   82 (248)
                      +.||+|||| |+||+++|++|+++++ +||+|+|+++  ++|+++||+|+.+
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~   52 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNV   52 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhcc
Confidence            469999998 9999999999999996 6999999988  8999999999863

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.08  E-value=7.1e-11  Score=96.38  Aligned_cols=61  Identities=23%  Similarity=0.202  Sum_probs=50.8

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCCC--eEEEEcC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESKA--HVQAFNG   91 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~~--~v~~~~~   91 (248)
                      ++..||+|+||+|+||++++|+|++.++++     +|+|+|+++    ++|.+|||+|++++.  .+..+++
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~   93 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGID   93 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCcccccc
Confidence            456799999999999999999999988865     899999987    689999999998754  4444443

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.95  E-value=1.8e-10  Score=91.64  Aligned_cols=52  Identities=27%  Similarity=0.373  Sum_probs=43.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcc-----eEEEEecCC----chhhHhhhcCccCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVD-----HLSLYDIVH----TPGVAADLSHIESK   83 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~-----elvLiDi~~----a~g~a~DL~~~~~~   83 (248)
                      .++||+||||+|+||+++||.|++++++.     +|+|+|+++    +++.+||++|+.++
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~   62 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALP   62 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccc
Confidence            46899999988999999999999988764     899999988    56667777787654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.87  E-value=5.3e-10  Score=88.90  Aligned_cols=52  Identities=27%  Similarity=0.431  Sum_probs=44.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcce-----EEEEecCC----chhhHhhhcCccCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDH-----LSLYDIVH----TPGVAADLSHIESK   83 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~e-----lvLiDi~~----a~g~a~DL~~~~~~   83 (248)
                      +++||+||||+|+||+++||+|++++++++     +.|+|.+.    +++.++|++|++++
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   63 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFP   63 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccc
Confidence            567999999889999999999999999875     55666655    78999999999864

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=4.9e-08  Score=78.64  Aligned_cols=60  Identities=20%  Similarity=0.179  Sum_probs=45.8

Q ss_pred             CCcEEEEEcCCCccHHHHHH---HHHhCCC-cceEEEEecCC--chhhHhhhcCccC----CCeEEEEcCc
Q psy14621         32 NNAKVMVAGASGGIGQPLSL---LLKQSPL-VDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNGA   92 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~---~l~~~~l-~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~~   92 (248)
                      ++|||+|||| |+||+++++   ++....+ .+||+|+|+++  ++++++|++|...    +.++..+++.
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~   70 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNL   70 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCCh
Confidence            3689999998 999988665   3434444 36999999998  8999999999752    4577766653

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=1.8e-07  Score=74.49  Aligned_cols=59  Identities=17%  Similarity=0.186  Sum_probs=44.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCC----cceEEEEecCC-chhhHhhhcCccC--CCeEEEEcCch
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPL----VDHLSLYDIVH-TPGVAADLSHIES--KAHVQAFNGAD   93 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l----~~elvLiDi~~-a~g~a~DL~~~~~--~~~v~~~~~~d   93 (248)
                      |||+|||| |++|.+.++....+..    .+||+|+|+++ ..+.++|+.|..+  +.++..+++.+
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~   66 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFE   66 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcc
Confidence            79999999 9999999986554433    47999999998 4456888888754  34666665543

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.16  E-value=6.8e-07  Score=71.58  Aligned_cols=59  Identities=19%  Similarity=0.089  Sum_probs=43.7

Q ss_pred             CcEEEEEcCCCccHHHH--HHHHHhCCC--cceEEEEecCC--chhhHhhhcCcc------CCCeEEEEcCc
Q psy14621         33 NAKVMVAGASGGIGQPL--SLLLKQSPL--VDHLSLYDIVH--TPGVAADLSHIE------SKAHVQAFNGA   92 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~--a~~l~~~~l--~~elvLiDi~~--a~g~a~DL~~~~------~~~~v~~~~~~   92 (248)
                      ++||+|||| |++|.+.  +.++.....  .+||+|+|+++  ++++++|+.|..      .+.++..+++.
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~   71 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDR   71 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCc
Confidence            479999999 9888654  445555444  36999999998  789999998863      24566666653

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.16  E-value=6.5e-07  Score=71.79  Aligned_cols=61  Identities=20%  Similarity=0.246  Sum_probs=44.8

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCC----cceEEEEecCC--chhhHhhhcCccC----CCeEEEEcCc
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPL----VDHLSLYDIVH--TPGVAADLSHIES----KAHVQAFNGA   92 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l----~~elvLiDi~~--a~g~a~DL~~~~~----~~~v~~~~~~   92 (248)
                      +++.||+|||| |.+|.+.++.......    .+||+|+|+++  +++.++|++|...    +.++..+++.
T Consensus         1 ~k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   71 (167)
T d1u8xx1           1 KKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDP   71 (167)
T ss_dssp             CCCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCH
T ss_pred             CCCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCCh
Confidence            36789999999 9999886653333222    36999999999  8888888888652    4577776654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.03  E-value=0.00028  Score=56.86  Aligned_cols=33  Identities=15%  Similarity=0.160  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |+||.++|..++..+.  ++..+|+++
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~   33 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSS   33 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCH
Confidence            79999999 9999999999999986  899999986

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00031  Score=53.80  Aligned_cols=33  Identities=24%  Similarity=0.237  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |.+|+.+|..|...+.  ++.++|..+
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~   33 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVP   33 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCH
Confidence            89999999 9999999999999886  899999876

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.97  E-value=0.00031  Score=54.40  Aligned_cols=33  Identities=27%  Similarity=0.179  Sum_probs=30.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |++|+++|..|..++.  ++..+|+++
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            79999999 9999999999999987  899999986

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.92  E-value=0.00039  Score=53.30  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=35.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      |||+|||++|.+|.++|..|+..+.  +++|.++++  ++..+..+..
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~e~~~~l~~~i~~   46 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRR   46 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh
Confidence            7999995559999999999999997  899999987  4444444543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.89  E-value=0.00041  Score=53.78  Aligned_cols=43  Identities=28%  Similarity=0.418  Sum_probs=36.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhh
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADL   77 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL   77 (248)
                      .||+|||+ |.+|+++|..|...+...+|..+|.++ ..-.+.++
T Consensus         2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence            47999999 999999999999999878999999987 44445444

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.86  E-value=0.00046  Score=53.65  Aligned_cols=34  Identities=21%  Similarity=0.249  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||+ |++|.++|..|+.++.  ++.++|+++
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            369999999 9999999999999996  899999976

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.71  E-value=0.00077  Score=51.41  Aligned_cols=42  Identities=19%  Similarity=0.339  Sum_probs=35.6

Q ss_pred             cccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |..+.....||+|||+.|.+|.++|..|...+.  ++..+|+++
T Consensus         2 ~~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~   43 (152)
T d2pv7a2           2 FKTINSDIHKIVIVGGYGKLGGLFARYLRASGY--PISILDRED   43 (152)
T ss_dssp             CCCSCTTCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTC
T ss_pred             CcccCCCCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccc
Confidence            444555678999999339999999999999998  899999987

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.62  E-value=0.0012  Score=50.38  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||| |.+|.++|..|..++.  ++.++|++.
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTL   35 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCH
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCh
Confidence            469999999 9999999999999997  899999976

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00075  Score=54.19  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||+|||| |.+|+.+|+.++..|+  +++|+|+++
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTE   37 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCh
Confidence            49999999 9999999999999997  899999987

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.57  E-value=0.00082  Score=55.12  Aligned_cols=38  Identities=18%  Similarity=0.295  Sum_probs=33.6

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...++.||+|||| |..|.++|+.|+++|.  +++|+|..+
T Consensus        26 ~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            4446679999999 9999999999999997  899999876

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.56  E-value=0.0013  Score=52.54  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...||+|||| |-.|.++|+.|+.++.  ++.|+|.+.
T Consensus         5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            4469999999 9999999999999987  899999865

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.55  E-value=0.0011  Score=56.94  Aligned_cols=36  Identities=25%  Similarity=0.257  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|||.|+||+|+||++++..|..++.  +++.+|..+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~   49 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKK   49 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCC
Confidence            679999999999999999999999885  777787654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0013  Score=52.25  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=32.5

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+.||.|+||+|++|++++..|..++.  ++.+++.++
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~   37 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDS   37 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcCh
Confidence            3567999999999999999999999985  899998765

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.44  E-value=0.0014  Score=50.81  Aligned_cols=42  Identities=17%  Similarity=0.351  Sum_probs=34.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhh
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAAD   76 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~D   76 (248)
                      ..||+|||| |..|.++|+.|..++. +++.|+|..+ .-|....
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~~~~gg~~~~   46 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGY-SDITIFEKQEYVGGLSTS   46 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSSSCSTHHHH
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEecCcccchhhh
Confidence            469999999 9999999999999996 4688999887 5454433

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.43  E-value=0.0015  Score=52.79  Aligned_cols=35  Identities=17%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...||+|||| |..|.++|..|+.+++  +++++|.++
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            3569999999 9999999999999997  899999753

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.43  E-value=0.0012  Score=49.23  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+|+ |++|..+|-.|...+.  +++++|.++
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~   33 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDK   33 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCCh
Confidence            79999999 9999999999999886  899999987

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.39  E-value=0.00083  Score=53.53  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -.||+|||| |.+|..+|..++..|+  +++|+|+++
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINE   37 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCH
Confidence            358999999 9999999999999997  899999987

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.39  E-value=0.0014  Score=50.68  Aligned_cols=33  Identities=30%  Similarity=0.324  Sum_probs=31.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||. |++|+.+|..|...+.  ++..+|+++
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~   33 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNP   33 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            79999999 9999999999999987  899999986

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0016  Score=52.40  Aligned_cols=37  Identities=19%  Similarity=0.306  Sum_probs=33.3

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++++.||+|||| |.-|.++|+.|...|+  ++.|++-..
T Consensus         2 ~~~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           2 TKKTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             SSCCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            457789999999 9999999999999997  899998876

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.38  E-value=0.00099  Score=52.94  Aligned_cols=32  Identities=34%  Similarity=0.556  Sum_probs=28.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||. |+||.++|..++ ++.  +++-+|+++
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILP   32 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCH
Confidence            79999998 999999997775 565  899999986

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.33  E-value=0.0012  Score=52.91  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||| |.-|.++|+.|++++.  ++.|+|..+
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            79999999 9999999999999997  799999876

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.29  E-value=0.0011  Score=51.88  Aligned_cols=34  Identities=21%  Similarity=0.388  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .|||+|||. |+.|+++|..|...+.  ++..+|+++
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~   34 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTY   34 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSH
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCH
Confidence            489999999 9999999999999986  899999976

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0016  Score=52.84  Aligned_cols=39  Identities=26%  Similarity=0.364  Sum_probs=35.0

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++++||.|+||+|+||++++-.|..++.+.++.+++.++
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~   50 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRK   50 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecCh
Confidence            455799999999999999999999999888999999866

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0022  Score=54.61  Aligned_cols=32  Identities=31%  Similarity=0.417  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      |||.|+||+|+||+.++..|..++.  +++++|.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEC
Confidence            7999999999999999999999984  8888885

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.12  E-value=0.0024  Score=50.87  Aligned_cols=33  Identities=27%  Similarity=0.392  Sum_probs=30.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||| |.-|.++|+.|++.++  +++|+|-.+
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            59999999 9999999999999997  899999765

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.11  E-value=0.0019  Score=49.98  Aligned_cols=34  Identities=24%  Similarity=0.383  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +||+|||| |..|.++|+.|.++++ .+++|+|..+
T Consensus         1 P~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            48999999 9999999999999986 4689999865

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.04  E-value=0.0031  Score=53.65  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=33.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+||+|||| |.-|.++|..|...+...++++++.+.
T Consensus         3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            3468999999 999999999999888878999999886

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.02  E-value=0.003  Score=51.27  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=31.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+||+|++|++++..|...+.  +++.++.+.
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~   37 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRES   37 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCC
Confidence            356999999999999999999999885  788888765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.00  E-value=0.0021  Score=52.46  Aligned_cols=35  Identities=23%  Similarity=0.464  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .|||.|+||+|+||+.++-.|..++.  +++-+|.++
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~   35 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD   35 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechh
Confidence            38999999999999999999999986  888888765

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.96  E-value=0.0029  Score=49.76  Aligned_cols=35  Identities=20%  Similarity=0.112  Sum_probs=30.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |++|..+|..|...+--.++.+++..+
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999 999999999998876666899998755

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.95  E-value=0.0034  Score=51.51  Aligned_cols=36  Identities=14%  Similarity=0.135  Sum_probs=30.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++.||.|+||+|+||.+++..|..+|.  +++.++.+.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCC
Confidence            567999999999999999999999884  677776654

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.89  E-value=0.0033  Score=47.86  Aligned_cols=33  Identities=18%  Similarity=0.138  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||. |++|+++|..|..++.  ++..+|..+
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~   33 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGR   33 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTC
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCch
Confidence            79999999 9999999999999986  788888766

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.84  E-value=0.0019  Score=51.56  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.||+|||| |..|+++|..|+.++-  ++.|++.++
T Consensus         6 ~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~   40 (189)
T d1n1ea2           6 YLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNE   40 (189)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCH
T ss_pred             eeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecH
Confidence            4458999999 9999999999999874  899999876

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.81  E-value=0.0042  Score=52.98  Aligned_cols=44  Identities=20%  Similarity=0.294  Sum_probs=37.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~   78 (248)
                      ++.||+|||| |.-|.++|+.|+.++.  ++.|+|-++ .=|.+-+..
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~~iGG~~~t~~   45 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDHIGGNSYDAR   45 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSSSSGGGCEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCCCCcCeeeEEE
Confidence            3579999999 9999999999999885  899999988 667775553

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.80  E-value=0.0036  Score=47.19  Aligned_cols=36  Identities=22%  Similarity=0.244  Sum_probs=31.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+||+|||+ |.+|..+|..|...+---+|.|+|..+
T Consensus         2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            369999999 999999999998876545899999876

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0045  Score=52.31  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|+||++++..|..++-. +++.+|...
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~   35 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGS   35 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCC
Confidence            79999999999999999988887732 788888754

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.72  E-value=0.0033  Score=49.44  Aligned_cols=32  Identities=25%  Similarity=0.402  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      |||+|||+ |..|+++|..|+.++.  ++.|+...
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~   32 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTE   32 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCG
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEec
Confidence            79999999 9999999999998874  88888653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.71  E-value=0.0051  Score=51.99  Aligned_cols=36  Identities=28%  Similarity=0.352  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||.|+||+|+||++++..|..++.  ++..+|.+.
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~   42 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTA   42 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCC
Confidence            457999999999999999999999986  788888765

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=95.71  E-value=0.0038  Score=53.09  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=29.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      ++|||.|+||+|+||++++..|..++.--.++.+|.
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~   36 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDK   36 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeC
Confidence            478999999999999999999988875335666664

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.65  E-value=0.0062  Score=46.85  Aligned_cols=34  Identities=24%  Similarity=0.513  Sum_probs=31.3

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.||++||. |..|+++|..|..++.  ++..+|+++
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~   34 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQ   34 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSH
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECch
Confidence            469999999 9999999999999987  899999876

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.65  E-value=0.0057  Score=49.16  Aligned_cols=35  Identities=26%  Similarity=0.368  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||| |..|.++|+.|.+.|+. +++++|..+
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi~-~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGIG-KVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCS-EEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            479999999 99999999999999853 788999865

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0097  Score=47.05  Aligned_cols=38  Identities=18%  Similarity=0.329  Sum_probs=34.0

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+..||+|||+ |..|.++|+.|+.++.  ++.|+|..+
T Consensus        39 ~~~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCCCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            3445679999999 9999999999999997  999999977

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.59  E-value=0.0044  Score=50.46  Aligned_cols=32  Identities=22%  Similarity=0.412  Sum_probs=29.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -|+|||| |-+|.++|+.|+.++.  +++|+|.++
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999999 9999999999999995  899999876

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.58  E-value=0.0048  Score=53.31  Aligned_cols=31  Identities=29%  Similarity=0.461  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEe
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD   66 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiD   66 (248)
                      |||.|+||+|+||++++..|.+++.  +++.+|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY--EVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEe
Confidence            7999999999999999999999995  799998

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.49  E-value=0.0053  Score=49.03  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|||| |.-|.++|..|...+.--++.++|..+
T Consensus         1 ~~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           1 TPQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            369999999 999999999988765444899999876

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.47  E-value=0.0052  Score=50.92  Aligned_cols=34  Identities=21%  Similarity=0.353  Sum_probs=30.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|.|||| |-+|.++|+.|+.++. .+++|+|.+.
T Consensus         2 ~dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            58999999 9999999999999985 3699999865

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.47  E-value=0.012  Score=49.22  Aligned_cols=36  Identities=22%  Similarity=0.380  Sum_probs=30.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCC----cceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPL----VDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l----~~elvLiDi~~   69 (248)
                      |||.|+|++|+||++++..|..++.    ++++..+|...
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~   40 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLT   40 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCC
Confidence            7999999999999999999998764    45788888654

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=95.44  E-value=0.01  Score=50.97  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=29.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      |||.|+||+|+||++++-.|+..+. ..++++|..
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~   34 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKL   34 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCC
Confidence            7999999999999999999998875 357778854

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0083  Score=45.98  Aligned_cols=37  Identities=14%  Similarity=0.086  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCC--CcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSP--LVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~--l~~elvLiDi~~   69 (248)
                      |.||+|+||+|.||+-+.-.|..++  ...+++++.-.+
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~   39 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ   39 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc
Confidence            3599999999999999987666554  345788887655

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.43  E-value=0.0064  Score=46.37  Aligned_cols=42  Identities=29%  Similarity=0.448  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCC-CcceEEEEecCCchhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSP-LVDHLSLYDIVHTPGV   73 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~-l~~elvLiDi~~a~g~   73 (248)
                      +++||+|+||+|.||..+..+|.+++ -.-||.++--....|+
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk   43 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ   43 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc
Confidence            35899999999999999999997543 2347888865543344

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.40  E-value=0.0056  Score=46.55  Aligned_cols=34  Identities=12%  Similarity=0.066  Sum_probs=29.0

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||++||+ |+.|++++..|...+- .++.++|.++
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~-~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGA   34 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSH
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC-CcEEEEeCCh
Confidence            79999999 9999999997766552 4899999976

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.30  E-value=0.0064  Score=48.06  Aligned_cols=38  Identities=24%  Similarity=0.349  Sum_probs=32.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++||+|+||+|.+|+-+..+|...+.+ ||..+--..
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~   40 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADR   40 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECST
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccc
Confidence            46789999999999999999999999977 576665444

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.30  E-value=0.0048  Score=48.86  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=27.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCC----cceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPL----VDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l----~~elvLiDi~   68 (248)
                      |||+|||| |-+|.++|+.|++++.    +.+..+++-.
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            79999999 9999999999998763    3466666643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.22  E-value=0.005  Score=45.45  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +|+.|+|+ |.+|+.+|-.|..++.  +++++|.++
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINE   33 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcH
Confidence            37899999 9999999999999987  899999987

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.20  E-value=0.0078  Score=45.94  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=29.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||+|||+ |++|++++..|...+  .++.++|.+.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~--~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTP--HELIISGSSL   33 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSS--CEEEEECSSH
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCC--CeEEEEcChH
Confidence            79999999 999999999998876  4899999865

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.15  E-value=0.0079  Score=47.15  Aligned_cols=28  Identities=25%  Similarity=0.411  Sum_probs=25.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcc
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVD   60 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~   60 (248)
                      |+||+|+||+|.+|.-+..+|...+-+.
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~e   28 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMT   28 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCc
Confidence            6799999999999999999999998763

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.15  E-value=0.012  Score=47.48  Aligned_cols=38  Identities=26%  Similarity=0.360  Sum_probs=34.0

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+..||+|||| |..|.++|+.|..+++  ++.|+|...
T Consensus        45 ~~~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          45 QTKNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             CCSSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cccCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            3456789999999 9999999999999997  899999877

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.14  E-value=0.012  Score=43.27  Aligned_cols=35  Identities=23%  Similarity=0.459  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|+|||+ |.+|.-+|..|..++.  ++.|++..+
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            3569999999 9999999999999986  899999877

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.05  E-value=0.0056  Score=50.33  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=29.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||+|||| |-+|.++|+.|...++  +++++|..+
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            8999999 9999999999999998  899999865

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.00  E-value=0.014  Score=42.80  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|+|||+ |.+|.-+|..|...+.  ++.|++..+
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            3469999999 9999999999999986  899999876

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.83  E-value=0.011  Score=46.68  Aligned_cols=42  Identities=24%  Similarity=0.287  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHh
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAA   75 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~   75 (248)
                      |+||+|+||+|.||.-+..+|...+-+ ||..+=-+...|..+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i   42 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKL   42 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBH
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcc
Confidence            579999999999999999999998876 455553333334443

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.79  E-value=0.016  Score=41.81  Aligned_cols=38  Identities=16%  Similarity=0.160  Sum_probs=32.9

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....+.||+|||+ |.+|.-+|..+...+.  ++.|++..+
T Consensus        18 ~~~~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          18 LGEVPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             CSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             hhhcCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            3345679999999 9999999999999985  899999876

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.0096  Score=48.69  Aligned_cols=35  Identities=29%  Similarity=0.563  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|+|+ |.+|+++|..|+..|+ .+|.|+|-+.
T Consensus        30 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            459999999 9999999999999995 7999999764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.75  E-value=0.013  Score=46.09  Aligned_cols=36  Identities=22%  Similarity=0.257  Sum_probs=29.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.||.|+||+|+||.+++-.|..++...++..+-.+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~   37 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   37 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCC
Confidence            369999999999999999999998876666655443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=94.72  E-value=0.069  Score=42.85  Aligned_cols=134  Identities=10%  Similarity=0.036  Sum_probs=74.0

Q ss_pred             CCcEEEEEcCCCccHHH-HHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCCCeEEEEcCchhhcCCCCCCeeEeEE
Q psy14621         32 NNAKVMVAGASGGIGQP-LSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVI  108 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~-~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~~~v~~~~~~d~~l~v~p~~V~~~Vi  108 (248)
                      ++.||+|||+ |++|.. .+..+...+-+.=+.++|+++  ++..+-+..  ....++..|++.++.+  +-.++++.+|
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~--i~~~~~~~~~d~~ell--~~~~iD~V~I  106 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYG--VDPRKIYDYSNFDKIA--KDPKIDAVYI  106 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTT--CCGGGEECSSSGGGGG--GCTTCCEEEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhc--cccccccccCchhhhc--ccccceeeee
Confidence            5679999999 999974 444555544443344899876  333332221  1123455555544444  3346777777


Q ss_pred             eccCCCcccccccCcc----------cCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhc
Q psy14621        109 GGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQ  175 (248)
Q Consensus       109 GeHsGds~vp~wS~a~----------p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~  175 (248)
                      .-. .++-.+.-..+-          |+ ..+.++..+|.+..++.+-.+.-   +-...+.-.-..+-++++++..
T Consensus       107 ~tp-~~~H~~~~~~al~~gk~v~~EKPl-a~~~~e~~~l~~~a~~~~~~~~v---~~~~r~~p~~~~~k~li~~~~~  178 (221)
T d1h6da1         107 ILP-NSLHAEFAIRAFKAGKHVMCEKPM-ATSVADCQRMIDAAKAANKKLMI---GYRCHYNQFSAQLDHLAEAVIN  178 (221)
T ss_dssp             CSC-GGGHHHHHHHHHHTTCEEEECSSC-CSSHHHHHHHHHHHHHHTCCEEE---CCGGGGCHHHHHHHHHHHHHHT
T ss_pred             ccc-hhhhhhHHHHhhhcchhhhcCCCc-cCCHHHHHHHHHHHHhcCCcEEE---eeccccCHHHHHHHHHHHhhhc
Confidence            644 233323222221          33 25667788888888877655543   2222222233445568888776

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.70  E-value=0.013  Score=48.65  Aligned_cols=31  Identities=23%  Similarity=0.469  Sum_probs=27.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      ||.|+||+|+||++++..|..++.  +++.+|.
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEEC
Confidence            899999999999999999999986  7777874

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=94.65  E-value=0.011  Score=48.11  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |||.|+||+|+||++++-.|..++   +++-+|...
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~   33 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHS   33 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCC
Confidence            799999999999999999888776   566666654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.015  Score=44.58  Aligned_cols=32  Identities=28%  Similarity=0.168  Sum_probs=29.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      =|+|||| |.-|.++|+.|+.+|.  ++.++|.++
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            5899999 9999999999999996  899999987

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.54  E-value=0.015  Score=44.52  Aligned_cols=40  Identities=28%  Similarity=0.519  Sum_probs=31.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCC-cceEEEEecCCchhh
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPL-VDHLSLYDIVHTPGV   73 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l-~~elvLiDi~~a~g~   73 (248)
                      -||+|+||+|.||..+..+|..++. ..++.++.-++..|.
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~   42 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGK   42 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccc
Confidence            4899999999999999999999874 668888865443343

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.54  E-value=0.019  Score=42.72  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||+|||+ |.+|.-+|..|...+.  ++.|++..+
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            4569999999 9999999999999986  899999876

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.016  Score=48.55  Aligned_cols=32  Identities=19%  Similarity=0.362  Sum_probs=28.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      .||.|+||+|+||++++-.|..++.  +++.+|.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeC
Confidence            5999999999999999999998875  7888885

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.50  E-value=0.021  Score=41.79  Aligned_cols=36  Identities=11%  Similarity=0.201  Sum_probs=32.0

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+.|++|||+ |.+|.-+|..|...+.  ++.|++..+
T Consensus        21 ~~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          21 EIPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            44579999999 9999999999998876  999999876

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.014  Score=48.42  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=27.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      +.||.|+||+|+||++++-.|..++.  +.+++|..
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~   35 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTR   35 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCc
Confidence            35999999999999999999999885  44555544

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.41  E-value=0.55  Score=38.35  Aligned_cols=68  Identities=16%  Similarity=0.195  Sum_probs=49.9

Q ss_pred             CchhHHHHHHHHHHHHHHhcccCCCCeEEEeeEecCCC--C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHH
Q psy14621        156 GSATLSMAYAGARFAFSLIQGLKGESNVIECAYVKSDV--T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKA  229 (248)
Q Consensus       156 gst~~siA~a~~~iv~aIl~~l~~~~~il~~s~~~g~y--g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~  229 (248)
                      +...|+  -.++.++++|.+   |++.++.+...+..+  +  .+.+.=+||+|+++|+..+ .+.+|.+.-...++.
T Consensus       128 ~~~~~~--e~a~~ii~ai~~---~~~~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~-~~g~lP~~~~~Li~~  199 (253)
T d1up7a2         128 GGSMYS--TAAAHLIRDLET---DEGKIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTL-SQGKGDHFALSFIHA  199 (253)
T ss_dssp             TTTTHH--HHHHHHHHHHHS---SSCEEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEB-CCCCCCHHHHHHHHH
T ss_pred             cCcchH--HHHHHHHHHHHc---CCCcEEEEeCCCcCcCCCCChhhheEEEEEecCCccccc-ccCCCcHHHHHHHHH
Confidence            344454  667899999999   888887766555444  2  7999999999999999986 444577665555443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.019  Score=41.57  Aligned_cols=36  Identities=25%  Similarity=0.351  Sum_probs=32.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .-+.||+|||+ |.+|.-+|..|...+.  ++.|++..+
T Consensus        19 ~~p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          19 ALPERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             hCCCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            34579999999 9999999999999986  899999876

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.38  E-value=0.026  Score=41.09  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.||+|||+ |.+|.-+|..|...+.  ++.|++..+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            579999999 9999999999998775  899999865

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.33  E-value=0.019  Score=49.18  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=27.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHh-CCCcceEEEEec
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQ-SPLVDHLSLYDI   67 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~-~~l~~elvLiDi   67 (248)
                      .|||-|+||+|+||++++..|.. .+.  +++.+|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~   35 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDS   35 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEEC
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEec
Confidence            47999999999999999987765 554  7889983

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.33  E-value=0.024  Score=43.84  Aligned_cols=36  Identities=31%  Similarity=0.157  Sum_probs=27.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      .+++|.|+||+|+||++++..|+.++.--.++.+..
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R   37 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVR   37 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcC
Confidence            467999999999999999999999885223433333

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=94.22  E-value=0.013  Score=45.03  Aligned_cols=41  Identities=15%  Similarity=0.101  Sum_probs=29.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCC--CcceEEEEecCCchhhH
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSP--LVDHLSLYDIVHTPGVA   74 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~--l~~elvLiDi~~a~g~a   74 (248)
                      |||+||||+|.||+-+..+|...+  ...+|.++--....|..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~   43 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPA   43 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBC
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccc
Confidence            799999999999999987665433  24578877665544443

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.019  Score=48.39  Aligned_cols=32  Identities=31%  Similarity=0.352  Sum_probs=27.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      .||.|+||+|+||++++..|..++.  +++.+|.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEEC
Confidence            4899999999999999999998885  7777773

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.04  Score=40.00  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||+|+|+ |+.|.-+|......++  +++.+|.++
T Consensus        10 ~~~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2          10 AATRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             TCCEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CCCEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            4569999998 9999999999999988  889999876

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.11  E-value=0.018  Score=46.87  Aligned_cols=32  Identities=28%  Similarity=0.437  Sum_probs=29.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -|+|||| |-+|.++|+.|+.++.  +++|+|...
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899999 9999999999999996  899999754

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.04  E-value=0.27  Score=40.62  Aligned_cols=65  Identities=14%  Similarity=0.148  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhcccCCCCeEEEeeEecCCC--C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECAYVKSDV--T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKAAVP  232 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s~~~g~y--g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~Sa~  232 (248)
                      -.++.|++||..   |++.++.+...+...  +  .+++.=+||+++++|+..+ .+.+|.+....+++.-..
T Consensus       146 e~a~~ii~ai~~---~~~~~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~-~~g~lP~~~~~Li~~~~~  214 (270)
T d1s6ya2         146 DAACSLISSIYN---DKRDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPI-AVGDLPVAVRGLVQQIKS  214 (270)
T ss_dssp             HHHHHHHHHHHH---TCCCEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEEC-CCBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CCCeEEEEECCCCCcCCCCCccceEEEEEEEECCceEee-ecCCCcHHHHHHHHHHHH
Confidence            567889999999   888888776555443  2  7999999999999999986 444678777766655443

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.00  E-value=0.024  Score=41.57  Aligned_cols=50  Identities=16%  Similarity=0.128  Sum_probs=36.8

Q ss_pred             ccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhcC
Q psy14621         27 SLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLSH   79 (248)
Q Consensus        27 ~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~~   79 (248)
                      ......+.|++|||+ |.||.-+|..+...+.  ++.|++.++ +.+.--|+.+
T Consensus        14 ~~l~~~P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~~l~~~D~~~~~   64 (122)
T d1h6va2          14 FSLPYCPGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSILLRGFDQDMAN   64 (122)
T ss_dssp             TTCSSCCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSSSSTTSCHHHHH
T ss_pred             hCcccCCCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEechhhccCCHHHHH
Confidence            333445579999999 9999999999999985  788888665 4444333433

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.98  E-value=0.024  Score=47.83  Aligned_cols=34  Identities=21%  Similarity=0.229  Sum_probs=28.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      ++++|.|+||+|++|++++-.|..++.  +++.+-.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R   35 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVH   35 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEEC
Confidence            567999999999999999999999875  5555543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.94  E-value=0.032  Score=46.12  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=29.6

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||-|+||+|+||++++..|..++.  ++.-+|...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCC
Confidence            4899999999999999999999885  788888754

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.017  Score=44.66  Aligned_cols=39  Identities=18%  Similarity=0.324  Sum_probs=31.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGV   73 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~   73 (248)
                      +..+|+|||+ |..|.+.|+.|+..++  +.+|+|..+.-|.
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~~~~g~   42 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANL--QPVLITGMEKGGQ   42 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCSSTTGG
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEeeccccc
Confidence            4569999999 9999999999999987  7788886543333

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.026  Score=47.29  Aligned_cols=34  Identities=18%  Similarity=0.185  Sum_probs=29.6

Q ss_pred             cEE-EEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKV-MVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV-~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .|| -|+||+|+||++++..|..++.  +++-+|...
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCC
Confidence            489 5899999999999999999986  788888754

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.021  Score=48.74  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=27.1

Q ss_pred             EEE-EEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         35 KVM-VAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        35 KV~-IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ||+ |+||+|+||++++..|..++.  +++.+|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECC
Confidence            566 889999999999999999885  78888863

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.031  Score=46.10  Aligned_cols=44  Identities=25%  Similarity=0.367  Sum_probs=37.4

Q ss_pred             cccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         24 DHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        24 ~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.|-+...+..++.|+||++.+|.++|..|+.+|.  +++|.|+++
T Consensus         5 ~~f~~~~L~GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~   48 (269)
T d1xu9a_           5 EEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSK   48 (269)
T ss_dssp             SCCCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             ccCCccccCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            45555445667899999999999999999999995  899999987

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.75  E-value=0.024  Score=43.84  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=30.7

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+|+|||. |++|+.+|..|...+.  ++..+|+++
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~   35 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTV   35 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSST
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCH
Confidence            47999999 9999999999999987  899999987

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.57  E-value=0.037  Score=46.02  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=28.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .|+-|+||+|+||++++..|..++.  +++-+|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECC
Confidence            4788899999999999999999986  77777753

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=93.57  E-value=0.033  Score=42.88  Aligned_cols=38  Identities=21%  Similarity=0.516  Sum_probs=30.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++++||+|||+ |++|...+-.+...+-+.-+.++|.++
T Consensus         1 M~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~   38 (170)
T d1f06a1           1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRA   38 (170)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSS
T ss_pred             CCcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccc
Confidence            35689999998 999999999888877665566777765

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.024  Score=47.49  Aligned_cols=42  Identities=17%  Similarity=0.116  Sum_probs=35.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhh
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADL   77 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL   77 (248)
                      |.+|.|||| |.-|.++|+.|++++.  ++.++|.++ .=|.+.|.
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~~iGG~~~t~   43 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRNHIGGNAYTE   43 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSSSSSGGGCEE
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCCCcccceEEe
Confidence            358999999 9999999999999885  899999987 66777664

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.031  Score=38.83  Aligned_cols=35  Identities=14%  Similarity=0.154  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|+|+ |..|.++|..|..++.  ++.++|.+.
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~   38 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRM   38 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCc
Confidence            4568999999 9999999999999985  789999866

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.50  E-value=0.038  Score=39.71  Aligned_cols=36  Identities=19%  Similarity=0.301  Sum_probs=31.8

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+.||+|||+ |.+|.-+|..|...+.  ++.|++..+
T Consensus        19 ~~p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          19 ALPQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            34579999999 9999999999999886  899999866

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.32  E-value=0.053  Score=39.27  Aligned_cols=39  Identities=21%  Similarity=0.262  Sum_probs=33.0

Q ss_pred             cccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         28 LYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        28 ~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .....+.||+|||+ |.||.-+|..+...|.  ++.++...+
T Consensus        17 ~l~~~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          17 DFQNVPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             SCSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CcccCCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            33445689999999 9999999999999886  888888766

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.28  E-value=0.022  Score=44.94  Aligned_cols=40  Identities=10%  Similarity=0.115  Sum_probs=32.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCc-----ceEEEEecCC-chhh
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLV-----DHLSLYDIVH-TPGV   73 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~-----~elvLiDi~~-a~g~   73 (248)
                      +.||+|||| |--|.++|+.|..++.-     -++.++|..+ .=|.
T Consensus         2 p~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~   47 (239)
T d1lqta2           2 PYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL   47 (239)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH
T ss_pred             CcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCe
Confidence            459999999 99999999999987631     3789999887 4443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.28  E-value=0.056  Score=42.22  Aligned_cols=39  Identities=18%  Similarity=0.202  Sum_probs=34.6

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+..+|.|+||+|.||..+|..|++++-  +++++|++.
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~   57 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKL   57 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccch
Confidence            344678999999999999999999999995  899999987

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.15  E-value=0.042  Score=46.10  Aligned_cols=34  Identities=21%  Similarity=0.163  Sum_probs=29.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      ++.||-|+||+|+||++++..|...+.  ++..+|.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEEC
Confidence            345888899999999999999999986  7888875

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=93.12  E-value=0.04  Score=42.40  Aligned_cols=35  Identities=34%  Similarity=0.587  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.||.|+|| |..+.++++.|...+. ++|.+++.+.
T Consensus        17 ~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~   51 (167)
T d1npya1          17 NAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNV   51 (167)
T ss_dssp             TSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCH
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccH
Confidence            468999999 9999999999999884 6899998876

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.06  E-value=0.034  Score=45.34  Aligned_cols=31  Identities=29%  Similarity=0.408  Sum_probs=28.8

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |+|||| |..|.++|+.|+..|.  +++++|..+
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            799999 9999999999999997  899999866

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.06  E-value=0.035  Score=44.16  Aligned_cols=32  Identities=22%  Similarity=0.242  Sum_probs=29.6

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -|.|||| |..|.++|+.|+++++  +++|+|.++
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899999 9999999999999997  899999876

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.03  E-value=0.048  Score=39.63  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||+ |.+|.-+|..|...+.  ++.|++..+
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            369999999 9999999999999886  899999876

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.02  E-value=0.036  Score=45.14  Aligned_cols=36  Identities=19%  Similarity=0.277  Sum_probs=32.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+||++.+|.++|..|+..+.  ++++.|+++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~   41 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGS   41 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            557899999999999999999999996  899999987

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.99  E-value=0.065  Score=39.07  Aligned_cols=35  Identities=20%  Similarity=0.146  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.||+|||+ |.+|.-+|..+...+.  ++.|++..+
T Consensus        21 ~pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          21 LPGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            3469999999 9999999999999986  899999876

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.084  Score=43.23  Aligned_cols=57  Identities=23%  Similarity=0.283  Sum_probs=43.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCCCeEEEEc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAFN   90 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~~~v~~~~   90 (248)
                      +.+.+.|+||++.||.++|..|+.+|.  ++++.|.++  ++..+-+|.....+.++..+.
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~   67 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYR   67 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEE
Confidence            345788999999999999999999996  799999887  455556666554455666543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.78  E-value=0.071  Score=38.18  Aligned_cols=34  Identities=9%  Similarity=0.118  Sum_probs=30.2

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||+ |.+|.-+|..|...+.  ++.+++..+
T Consensus        22 ~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          22 GSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            469999999 9999999999998874  899999866

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.044  Score=44.36  Aligned_cols=30  Identities=23%  Similarity=0.458  Sum_probs=26.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEe
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYD   66 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiD   66 (248)
                      |.|+|++|+||++++..|+.++. .+++.+|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEE
Confidence            78999999999999999999984 4677787

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.65  E-value=0.052  Score=45.66  Aligned_cols=31  Identities=26%  Similarity=0.298  Sum_probs=27.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      .|.|+||+|+||++++..|..++.  +++.+|.
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~   33 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADN   33 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEEC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEEC
Confidence            477999999999999999999985  7888885

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.57  E-value=0.024  Score=44.05  Aligned_cols=35  Identities=14%  Similarity=0.315  Sum_probs=29.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++.+|+|||+ |..|.++|..|+..++  +.+++|...
T Consensus         4 ~~~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCSS
T ss_pred             ccceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEeec
Confidence            3469999999 9999999999999987  677887543

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.52  E-value=0.05  Score=45.74  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=30.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|+|||| |..|.++|..|...++  +++++|.++
T Consensus         8 ~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            58999999 9999999999999998  799999876

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.49  E-value=0.55  Score=38.73  Aligned_cols=62  Identities=16%  Similarity=0.231  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhcccCCCCeEEEeeEecCCC--C--CceEEEeeEEEcCCcEEEEecCCCCCHHHHHHHHH
Q psy14621        164 YAGARFAFSLIQGLKGESNVIECAYVKSDV--T--EASYFSTPVHLGKNGIEKNLGLGKLSDFEKELVKA  229 (248)
Q Consensus       164 ~a~~~iv~aIl~~l~~~~~il~~s~~~g~y--g--~~v~~s~Pv~lg~~Gv~~i~~l~~Ls~~E~~~L~~  229 (248)
                      ..+++++++|..   |+++.+.+...+...  +  .+.+.=+||+|+++|+..+ .+++|.+.....++.
T Consensus       153 e~av~ii~ai~~---~~~~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~-~~g~lP~~~~~Li~~  218 (276)
T d1u8xx2         153 SYIVDLARAIAY---NTGERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPI-TVGTIPQFQKGLMEQ  218 (276)
T ss_dssp             HHHHHHHHHHHH---TCCEEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEEC-CCBCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CCCcEEEEEeCCCCcCCCCChhhheeeEEEEcCCceEee-ecCCCcHHHHHHHHH
Confidence            456889999999   888888776555443  2  7999999999999999986 444677666555543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=92.44  E-value=0.067  Score=45.01  Aligned_cols=32  Identities=19%  Similarity=0.183  Sum_probs=26.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEe
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYD   66 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiD   66 (248)
                      ..||.|+||+|+||+.++..|.++|.  +++-..
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~v   42 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGY--KVRGTA   42 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEe
Confidence            46999999999999999999999885  554433

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=92.29  E-value=0.11  Score=42.14  Aligned_cols=53  Identities=9%  Similarity=0.060  Sum_probs=41.0

Q ss_pred             CCcEEEEEcCCC--ccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhcCccCCCeE
Q psy14621         32 NNAKVMVAGASG--GIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLSHIESKAHV   86 (248)
Q Consensus        32 ~~~KV~IiGaaG--~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~~~~~~~~v   86 (248)
                      +.+++.|+||+|  .||.++|..|+..|.  ++++.|+++ ++..+.++......+.+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~   59 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYV   59 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCE
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeE
Confidence            456899999877  599999999999997  899999988 55566666554444443

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.26  E-value=0.082  Score=42.51  Aligned_cols=35  Identities=20%  Similarity=0.384  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .++|.|+||++.+|.++|..|+.++.  +++++|.++
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            46899999999999999999999986  799999876

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.24  E-value=0.06  Score=40.19  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=26.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .||+|||+ |.+|..+|..|.. +.  ++.|++..+
T Consensus         1 ~rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKEP   32 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSSS
T ss_pred             CeEEEECC-cHHHHHHHHHHHc-CC--CEEEEeccc
Confidence            39999999 9999999999865 32  899998654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.22  E-value=0.038  Score=40.81  Aligned_cols=41  Identities=15%  Similarity=0.227  Sum_probs=30.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGV   73 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~   73 (248)
                      ++.+|.|+|| |+.|.+++..+....-+.=+.++|-++ ..|.
T Consensus         2 ~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~   43 (126)
T d2dt5a2           2 RKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGR   43 (126)
T ss_dssp             SCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC
T ss_pred             CCceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC
Confidence            3469999999 999999987665544455678888776 4343

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.18  E-value=0.068  Score=42.91  Aligned_cols=35  Identities=23%  Similarity=0.413  Sum_probs=31.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|+||++.+|.++|-.|++.+.  +++++|+++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~   36 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSA   36 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            35899999999999999999999985  799999976

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.01  E-value=0.097  Score=43.23  Aligned_cols=46  Identities=15%  Similarity=0.258  Sum_probs=36.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      -+.+.+.|+||++.+|.++|..|+..|.  ++++.|.+.  .+..+.+|.
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~   70 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQIS   70 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHH
Confidence            3446788889999999999999999995  899999987  444455554

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.96  E-value=0.057  Score=48.05  Aligned_cols=35  Identities=34%  Similarity=0.493  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus        37 ~~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          37 TCKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             HCCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             cCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            459999999 9999999999999995 6899999865

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.87  E-value=0.13  Score=41.77  Aligned_cols=56  Identities=20%  Similarity=0.176  Sum_probs=40.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCCCeEEEEc
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAFN   90 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~~~v~~~~   90 (248)
                      .+.+.|+||++.+|.++|..|+.+|.  ++++.|++.  .+-.+.+|.....+.++..+.
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~   60 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQ   60 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            34566779999999999999999996  799999987  444455665543344555443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.83  E-value=0.11  Score=39.09  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=29.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      .+.+|+|||+ |.+|..+|..|...+.-..+++++..
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecCc
Confidence            3569999999 99999999999998875567666654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.13  Score=41.32  Aligned_cols=45  Identities=18%  Similarity=0.248  Sum_probs=36.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.+.+.|+||++.+|.++|..|+.+|.  ++++.|+++  ++..+-++.
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~   50 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG   50 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC
Confidence            344567899999999999999999996  799999987  455555554

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.69  E-value=0.082  Score=36.04  Aligned_cols=33  Identities=18%  Similarity=0.168  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++|+|+|+ |+.|.-++......|+  +++.+|.++
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            58999998 9999999999988887  899999876

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=91.45  E-value=0.071  Score=42.88  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|.|||| |..|..+|+.|+.++.  +++|+|.++
T Consensus         5 ~DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CcEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            47999999 9999999999999996  799999877

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.31  E-value=0.12  Score=41.89  Aligned_cols=55  Identities=20%  Similarity=0.196  Sum_probs=39.3

Q ss_pred             cEEEEE-cCCCccHHHHHHHHHh---CCCcceEEEEecCC--chhhHhhhcCccCCCeEEEEc
Q psy14621         34 AKVMVA-GASGGIGQPLSLLLKQ---SPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAFN   90 (248)
Q Consensus        34 ~KV~Ii-GaaG~VG~~~a~~l~~---~~l~~elvLiDi~~--a~g~a~DL~~~~~~~~v~~~~   90 (248)
                      .||+|| ||++.+|.++|..|+.   ++.  .++|+|.++  ++..+-+|.......++..+.
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~   66 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAA   66 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHHHHHHHHHHHHhhcCCceEEEEE
Confidence            377776 9999999999999985   443  899999987  455555665433445666554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.95  E-value=0.092  Score=42.82  Aligned_cols=44  Identities=30%  Similarity=0.536  Sum_probs=35.3

Q ss_pred             cEE-EEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         34 AKV-MVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        34 ~KV-~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      +|| .|+||++.+|.++|..|+.+|.  .+++.|+++  ++..+-+|+.
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~   47 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQ   47 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh
Confidence            377 5669999999999999999996  799999987  4445555653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=90.92  E-value=0.15  Score=38.99  Aligned_cols=37  Identities=24%  Similarity=0.409  Sum_probs=25.4

Q ss_pred             CCcEEEEEcCCCccHHHHH-HHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLS-LLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a-~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||+|||+ |.+|.... -.|...+.++=..+.|++.
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~~el~avas~~~   40 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDA   40 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCT
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCcceEEEEEecch
Confidence            4589999997 99998654 4555566653334457765

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.89  E-value=0.11  Score=38.14  Aligned_cols=39  Identities=15%  Similarity=0.282  Sum_probs=33.3

Q ss_pred             cccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         28 LYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        28 ~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+.+.+++|||+ |.+|.-+|..+...+.  ++.+++..+
T Consensus        21 ~l~~~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          21 ALKEVPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             TCCCCCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CccccCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            34455689999999 9999999999999886  899998766

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.77  E-value=0.15  Score=41.61  Aligned_cols=55  Identities=22%  Similarity=0.334  Sum_probs=40.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCCCeEEEE
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAF   89 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~~~v~~~   89 (248)
                      .+.+.|+||++.+|.++|..|+..|.  ++++.|+++  ++..+.++.......++..+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~   60 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTT   60 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEE
Confidence            34677789999999999999999995  799999987  44444444443334455544

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.61  E-value=0.14  Score=40.91  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=29.5

Q ss_pred             cEE-EEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKV-MVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV-~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||| .|+||++.+|.++|..|+..|.  ++++.|+++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCh
Confidence            455 6669999999999999999996  799999876

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=90.59  E-value=0.14  Score=41.93  Aligned_cols=46  Identities=20%  Similarity=0.416  Sum_probs=36.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      +.+.+.|+||++.+|.++|..|+.++.  ++++.|+++  ++-.+.+|..
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~   52 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGS   52 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC
Confidence            345677789999999999999999995  799999987  4555556654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=90.55  E-value=0.12  Score=39.55  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=30.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|| |..+.++++.|...+.  +|.+++++.
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSH
T ss_pred             CCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchH
Confidence            4569999999 9999999999999985  699998765

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.52  E-value=0.14  Score=41.89  Aligned_cols=46  Identities=26%  Similarity=0.390  Sum_probs=36.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      +.+.+.|+||++.+|.++|..|+..+-  ++++.|+++  ++..+.++..
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~   51 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVRE   51 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh
Confidence            345778889999999999999999995  799999987  4445555654

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.52  E-value=0.21  Score=38.47  Aligned_cols=36  Identities=14%  Similarity=0.298  Sum_probs=32.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|+ |..|.++++.|...+ +.+|.+++.+.
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g-~~~i~i~nR~~   52 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEG-LKEIKLFNRRD   52 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEECSS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcC-CceEeeeccch
Confidence            4569999999 999999999999987 57999999986

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=90.39  E-value=0.1  Score=39.58  Aligned_cols=123  Identities=14%  Similarity=0.068  Sum_probs=64.8

Q ss_pred             CcEEEEEcCCCccHHH-HHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCCCeEEEEcCchhhcCCCCCCeeEeEEe
Q psy14621         33 NAKVMVAGASGGIGQP-LSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIG  109 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~-~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~~~v~~~~~~d~~l~v~p~~V~~~ViG  109 (248)
                      ++||+|||+ |++|.. .+..+...+-+ |++++|.++  ++..+-++...      ..|++.++.+  + .++++.++.
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~ll--~-~~iD~V~I~   69 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVS------ATCTDYRDVL--Q-YGVDAVMIH   69 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCC------CCCSSTTGGG--G-GCCSEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhcccc------cccccHHHhc--c-cccceeccc
Confidence            479999999 999976 44455555433 788999877  33333333211      1122222233  2 257777775


Q ss_pred             ccCCCcccccccCcc----------cCCCCChHHHHHHHHHHhhccceeeeccCCCCchhHHHHHHHHHHHHHHhc
Q psy14621        110 GHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFAFSLIQ  175 (248)
Q Consensus       110 eHsGds~vp~wS~a~----------p~~~~~~~~~~~i~~~v~~~g~eIi~~k~gkgst~~siA~a~~~iv~aIl~  175 (248)
                      -. .++.++.--.+-          |+ ..+.++.+++.+..++.+-.+.-   |  ...|.+  ++.++.+.+..
T Consensus        70 tp-~~~H~~~~~~al~~gk~V~~EKP~-~~~~~e~~~l~~~a~~~~~~~~v---g--~~r~~~--~~~~~~~~~~~  136 (167)
T d1xeaa1          70 AA-TDVHSTLAAFFLHLGIPTFVDKPL-AASAQECENLYELAEKHHQPLYV---G--FNGFDA--MVQDWLQVAAA  136 (167)
T ss_dssp             SC-GGGHHHHHHHHHHTTCCEEEESCS-CSSHHHHHHHHHHHHHTTCCEEE---E--CGTHHH--HHHHHHHHHHH
T ss_pred             cc-ccccccccccccccccccccCCCC-cCCHHHHHHHHHHHHHcCCEEEE---E--eCcCCH--HHHHHHHHhhc
Confidence            43 233333222221          32 14556677777777776655543   2  222332  34455555554

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.34  E-value=0.1  Score=37.91  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=32.4

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+.+++|||+ |.+|.-+|..+...|.  ++.+++..+
T Consensus        22 ~~~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          22 SEIPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             SSCCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cccCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            345679999999 9999999999999985  899998866

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=90.31  E-value=0.11  Score=42.29  Aligned_cols=33  Identities=18%  Similarity=0.380  Sum_probs=28.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhC-CCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQS-PLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~-~l~~elvLiDi~~   69 (248)
                      .-|+|||| |..|.++|+.|+.+ ++  +++|+|..+
T Consensus        34 ~DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~   67 (278)
T d1rp0a1          34 TDVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSV   67 (278)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSS
T ss_pred             CCEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCC
Confidence            35999999 99999999999874 77  899999875

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.23  E-value=0.15  Score=41.25  Aligned_cols=36  Identities=22%  Similarity=0.318  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+||++.+|.++|..|+.+|.  ++++.|+++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~   41 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQ   41 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCH
Confidence            456888999999999999999999996  799999987

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=90.21  E-value=0.1  Score=42.90  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=28.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHh-----CCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQ-----SPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~-----~~l~~elvLiDi~~   69 (248)
                      .=|.|||| |-+|.++|..|++     +++  +++|+|..+
T Consensus         8 yDV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            46999999 9999999999974     566  799999765

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.19  E-value=0.15  Score=41.50  Aligned_cols=45  Identities=18%  Similarity=0.219  Sum_probs=36.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.+.+.|+||++.+|.++|..|+.+|.  ++++.|+++  ++-.+.+|.
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~   50 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLT   50 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence            456788999999999999999999995  799999987  334444554

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.18  E-value=0.19  Score=41.28  Aligned_cols=57  Identities=18%  Similarity=0.288  Sum_probs=43.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC-CCeEEEEc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES-KAHVQAFN   90 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~-~~~v~~~~   90 (248)
                      +.+.+.|+||++.+|.++|..|+..|.  +++|.|+++  ++..+-++..... ..++..+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~   63 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVV   63 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEE
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEE
Confidence            345788889999999999999999995  799999987  5555666765543 34555543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.06  E-value=0.15  Score=41.51  Aligned_cols=44  Identities=20%  Similarity=0.336  Sum_probs=35.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      .+.+.|+||++.+|.++|..|+.++.  ++++.|+++  ++..+.++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~   51 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELA   51 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhh
Confidence            34667779999999999999999996  799999987  444555554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.02  E-value=0.15  Score=41.42  Aligned_cols=44  Identities=23%  Similarity=0.382  Sum_probs=34.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      +.+.|+||++.+|.++|..|+..+-  +++++|.++  ++..+-+|..
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~   56 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKS   56 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHh
Confidence            3444569999999999999999985  799999987  5555666654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.91  E-value=0.13  Score=41.93  Aligned_cols=44  Identities=18%  Similarity=0.389  Sum_probs=36.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADL   77 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL   77 (248)
                      +.+++.|+||++.+|.++|..|+..+.  ++++.|+++  ++..+.++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~   49 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEI   49 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh
Confidence            345778889999999999999999995  799999986  45555555

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=89.91  E-value=0.16  Score=40.20  Aligned_cols=38  Identities=29%  Similarity=0.313  Sum_probs=32.2

Q ss_pred             ccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ......+|+|||. |+||+.+|-.|...+.  ++..+|...
T Consensus        41 ~~l~~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~   78 (199)
T d1dxya1          41 KELGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYP   78 (199)
T ss_dssp             CCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             ccccceeeeeeec-ccccccccccccccce--eeeccCCcc
Confidence            3345579999999 9999999999998876  889999865

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.86  E-value=0.12  Score=38.96  Aligned_cols=31  Identities=16%  Similarity=0.328  Sum_probs=27.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      -|+|||+ |..|.++|..++..++  +.+++|..
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGER   33 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEEe
Confidence            4899999 9999999999999997  68888853

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.85  E-value=0.15  Score=37.67  Aligned_cols=34  Identities=21%  Similarity=0.302  Sum_probs=25.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      |||+|+|++|+.|+.++-.+...+. .-+.-+|.+
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~   34 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVN   34 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETT
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCC
Confidence            7999999999999999988887764 223344543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.82  E-value=0.18  Score=40.37  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=32.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+||++.+|.++|..|+.++.  ++++.|+++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~   38 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNE   38 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            456899999999999999999999996  899999976

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.72  E-value=0.15  Score=39.62  Aligned_cols=32  Identities=13%  Similarity=0.035  Sum_probs=28.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      =|+|||+ |..|.++|..++..++  +++|+|..+
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            4899999 9999999999999997  799999754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.71  E-value=0.19  Score=41.05  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=32.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+++.|.||++.+|.++|..|+..|.  ++++.|.+.
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~   52 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANS   52 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCc
Confidence            4557999999999999999999999996  799999876

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.67  E-value=0.35  Score=37.56  Aligned_cols=44  Identities=20%  Similarity=0.233  Sum_probs=34.8

Q ss_pred             ccccccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         23 VDHLSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        23 ~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+..........+|+|||. |.||..+|-.+...+.  ++.-+|..+
T Consensus        32 ~~~~~~~~l~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~   75 (181)
T d1qp8a1          32 GRDVEIPLIQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTP   75 (181)
T ss_dssp             CCCSCCCCCTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCCCCCcccCceEEEecc-ccccccceeeeecccc--ccccccccc
Confidence            3343333345679999999 9999999999998886  899999865

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=89.57  E-value=0.17  Score=41.27  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=32.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..++.|+||++.+|.++|..|+.++.  ++++.|.++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~   40 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNE   40 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            456899999999999999999999996  899999987

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.13  Score=41.73  Aligned_cols=35  Identities=23%  Similarity=0.355  Sum_probs=30.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++.|+||++.+|.++|..|+.++.  ++++.|+++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~   40 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINE   40 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            35677779999999999999999995  899999986

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.55  E-value=0.19  Score=40.86  Aligned_cols=36  Identities=17%  Similarity=0.294  Sum_probs=32.0

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+||++.+|.++|..|+..|.  ++++.|.++
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~   43 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSA   43 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            456778889999999999999999996  799999987

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=89.40  E-value=0.27  Score=39.34  Aligned_cols=46  Identities=11%  Similarity=0.245  Sum_probs=35.6

Q ss_pred             CCcEEEEEcCCC--ccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhcC
Q psy14621         32 NNAKVMVAGASG--GIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLSH   79 (248)
Q Consensus        32 ~~~KV~IiGaaG--~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~~   79 (248)
                      +.++|.|+||+|  .+|.++|..|+.+|.  ++++.|.++ .+..+.++..
T Consensus         4 ~gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~   52 (258)
T d1qsga_           4 SGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAA   52 (258)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHh
Confidence            346888999877  588999999999996  799999987 5555544443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=89.39  E-value=0.28  Score=34.79  Aligned_cols=38  Identities=11%  Similarity=0.085  Sum_probs=29.7

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHh-CCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQ-SPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~-~~l~~elvLiDi~~   69 (248)
                      +.+.||+|||+ |.+|.-+|..+.. ...-.++.+++..+
T Consensus        16 ~~p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          16 EAPKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             SCCSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             ccCCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            34579999999 9999999986654 33445899999866

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.37  E-value=0.22  Score=40.25  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+||++.+|.++|..|+..+.  ++++.|.++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~   39 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTN   39 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            456888999999999999999999995  799999876

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.33  E-value=0.13  Score=38.71  Aligned_cols=31  Identities=26%  Similarity=0.384  Sum_probs=24.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ||++||. |+.|..+|..|...+.  .++ ++.+.
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~~-~~~~~   32 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TLV-WNRTF   32 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EEE-ECSST
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EEE-EeCCH
Confidence            8999999 9999999999998764  444 44444

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.23  E-value=0.22  Score=40.39  Aligned_cols=43  Identities=28%  Similarity=0.370  Sum_probs=35.1

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      .-+.|+||++.+|..+|..|+++|.  .++|.|+++  ++-.+.++.
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~   52 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCK   52 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence            4566669999999999999999996  899999987  455555554

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=0.19  Score=42.06  Aligned_cols=57  Identities=18%  Similarity=0.195  Sum_probs=42.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCcc---CCCeEEEEc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIE---SKAHVQAFN   90 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~---~~~~v~~~~   90 (248)
                      +...+.|+||++.||.++|..|+..|.  ++++.|+++  ++..+-+|....   ...++..+.
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~   72 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQ   72 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEe
Confidence            456788889999999999999999995  799999987  555666665322   234555543

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.16  E-value=0.17  Score=39.87  Aligned_cols=34  Identities=24%  Similarity=0.491  Sum_probs=30.2

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++.|+||++.+|.++|..|+..|.  ++++.|+++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            3567779999999999999999996  899999986

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.06  E-value=0.19  Score=40.95  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+.|+||++.+|.++|..|+..+.  ++++.|+++
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~   40 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDE   40 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            45788889999999999999999996  899999987

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.04  E-value=0.21  Score=38.79  Aligned_cols=32  Identities=16%  Similarity=0.187  Sum_probs=29.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      =|+|||+ |.-|.++|..++..+.  +++|+|..+
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRG   38 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            5899999 9999999999999987  899999765

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.99  E-value=0.15  Score=41.90  Aligned_cols=56  Identities=13%  Similarity=0.275  Sum_probs=41.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCC-CeEEEEc
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESK-AHVQAFN   90 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~-~~v~~~~   90 (248)
                      .+.+.|+||++.||.++|..|+..|.  ++++.|+++  ++..+-++.....+ .++..+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~   62 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVV   62 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEE
Confidence            45788999999999999999999996  799999987  55555666544322 3555443

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=88.97  E-value=0.22  Score=39.19  Aligned_cols=36  Identities=25%  Similarity=0.399  Sum_probs=31.5

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....+|+|||. |+||..+|-.|...+.  ++..+|...
T Consensus        47 L~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~   82 (193)
T d1mx3a1          47 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYL   82 (193)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTS
T ss_pred             eeCceEEEecc-ccccccceeeeecccc--ceeeccCcc
Confidence            45679999999 9999999999998876  889999865

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=88.82  E-value=0.18  Score=40.94  Aligned_cols=44  Identities=23%  Similarity=0.322  Sum_probs=35.2

Q ss_pred             cEE-EEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         34 AKV-MVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        34 ~KV-~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      .|| .|.||++.+|.++|..|+.++.  ++++.|.++  ++-.+-+|..
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~   48 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELRE   48 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHh
Confidence            377 4669999999999999999996  799999987  4555556653

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=88.81  E-value=0.14  Score=38.88  Aligned_cols=33  Identities=24%  Similarity=0.230  Sum_probs=27.5

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      .||+|||+ |.+|..+|..|...+.-.+|+++.-
T Consensus         4 a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           4 APVVVLGA-GLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCEEEECc-cHHHHHHHHHHHhcCCceEEEEEec
Confidence            47999998 9999999999998876556777654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.72  E-value=0.27  Score=39.65  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+||++.+|.++|..|+..+.  ++++.|+++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~   39 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEE   39 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            456788889999999999999999996  799999986

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.69  E-value=0.2  Score=35.78  Aligned_cols=39  Identities=13%  Similarity=0.092  Sum_probs=30.0

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCC-cceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPL-VDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l-~~elvLiDi~~   69 (248)
                      ...+.+|+|||+ |.+|.-+|..+...+. -.++.|++..+
T Consensus        17 ~~~p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          17 PEPPRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SSCCSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             hhcCCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            334579999999 9999999987765432 24899998866

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.61  E-value=0.17  Score=41.32  Aligned_cols=45  Identities=13%  Similarity=0.143  Sum_probs=36.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.+++.|+||++.||.++|..|+..+.  ++++.|.++  ++-.+-++.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~   53 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQ   53 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence            456889999999999999999999996  799999987  444444444

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=88.57  E-value=0.25  Score=40.56  Aligned_cols=36  Identities=17%  Similarity=0.349  Sum_probs=32.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+.+.|+||++.+|.++|..|+.++.  ++++.|+++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~   39 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSA   39 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            346788889999999999999999996  899999976

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.57  E-value=0.17  Score=41.48  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=29.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .=|.|||+ |..|.++|+.|+.++.  +++|+|..+
T Consensus        17 ~DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          17 VDVVVVGS-GGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            35999999 9999999999999996  799999866

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=88.55  E-value=0.22  Score=40.64  Aligned_cols=36  Identities=17%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+++.|+||++.+|.++|..|+.++.  ++++.|+++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~   39 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLD   39 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            456889999999999999999999996  799999986

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=88.43  E-value=0.19  Score=38.25  Aligned_cols=37  Identities=22%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+..||.|||| |.+|..++..|..++ ++++.++....
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g-~~~i~v~nRt~   58 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRG-VRAVLVANRTY   58 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHC-CSEEEEECSSH
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhcC-CcEEEEEcCcH
Confidence            35669999999 999999999999987 46899998764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.40  E-value=0.29  Score=34.64  Aligned_cols=35  Identities=14%  Similarity=0.365  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..||.|||+ |.+|..-|..|...+-  ++.+++...
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            4569999999 9999999999999984  788898765

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.04  E-value=0.27  Score=37.61  Aligned_cols=109  Identities=9%  Similarity=0.124  Sum_probs=59.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccCCCeEEEEcCchhhcCCCCCCeeEeEEec
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIGG  110 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~~~~v~~~~~~d~~l~v~p~~V~~~ViGe  110 (248)
                      .+||+|||+ |++|...+..+...+-+.=+.++|.++  ++..+-..   ..+...+.|.+.++.+.  -.++++.++.-
T Consensus         1 kiki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~ll~--~~~iD~v~I~t   74 (184)
T d1ydwa1           1 QIRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATAN---NYPESTKIHGSYESLLE--DPEIDALYVPL   74 (184)
T ss_dssp             CEEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT---TCCTTCEEESSHHHHHH--CTTCCEEEECC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhcc---ccccceeecCcHHHhhh--ccccceeeecc
Confidence            369999998 999999888887766554344778876  22222111   11223445555443433  23577777765


Q ss_pred             cCCCcccccccCc----c------cCCCCChHHHHHHHHHHhhccceee
Q psy14621        111 HAGITIIPLISQA----T------PSVSFPDDQLKALTGRIQEAGTEVV  149 (248)
Q Consensus       111 HsGds~vp~wS~a----~------p~~~~~~~~~~~i~~~v~~~g~eIi  149 (248)
                      . .+..+..--.+    .      |+. .+.++.+++.+..++.+-.+.
T Consensus        75 p-~~~h~~~~~~~l~~g~~v~~EKP~~-~~~~e~~~l~~~~~~~~~~~~  121 (184)
T d1ydwa1          75 P-TSLHVEWAIKAAEKGKHILLEKPVA-MNVTEFDKIVDACEANGVQIM  121 (184)
T ss_dssp             C-GGGHHHHHHHHHTTTCEEEECSSCS-SSHHHHHHHHHHHHTTTCCEE
T ss_pred             c-chhhcchhhhhhhccceeecccccc-cCHHHHHHHHHHHHhhCCEEE
Confidence            4 23332221111    1      221 455566777777766554443

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=88.04  E-value=0.26  Score=40.18  Aligned_cols=45  Identities=16%  Similarity=0.138  Sum_probs=35.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.+.+.|+||++.+|.++|..|+..+.  ++++.|+++  ++-.+-++.
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~   53 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWR   53 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence            345788889999999999999999995  799999987  444444444

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.04  E-value=0.23  Score=40.44  Aligned_cols=45  Identities=18%  Similarity=0.390  Sum_probs=36.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +.+++.|+||++.+|.++|..|+..|.  ++++.|+++  ++-.+-++.
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~   56 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQ   56 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence            456888889999999999999999996  799999876  444444554

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.80  E-value=0.21  Score=40.63  Aligned_cols=44  Identities=25%  Similarity=0.387  Sum_probs=35.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      .+++.|+||++.+|.++|..|+..+.  ++++.|+++  ++-.+-++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~   51 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG   51 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhC
Confidence            35677779999999999999999996  799999987  444455553

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.74  E-value=0.22  Score=38.20  Aligned_cols=44  Identities=14%  Similarity=0.391  Sum_probs=33.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSH   79 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~   79 (248)
                      +..+|.|+|+ |.++.+++|.|...+   +|.++.++.  ++..+-++..
T Consensus        17 ~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~   62 (177)
T d1nvta1          17 KDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAE   62 (177)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHH
Confidence            5569999999 999999999996544   899998876  4444555543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.73  E-value=0.18  Score=38.99  Aligned_cols=32  Identities=16%  Similarity=0.151  Sum_probs=28.7

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      =|.|||+ |..|.++|..++..+.  +++++|..+
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKRG   36 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            3899999 9999999999999886  899999765

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.68  E-value=0.23  Score=39.09  Aligned_cols=34  Identities=6%  Similarity=0.046  Sum_probs=30.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ..++|||+ |+.|..+|..|.+++.-.+|+|++..
T Consensus         5 ~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           5 VPFLLIGG-GTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             EEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            47899999 99999999999988887899999864

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.67  E-value=0.2  Score=43.28  Aligned_cols=32  Identities=31%  Similarity=0.442  Sum_probs=28.9

Q ss_pred             EEEEEcCCCccHHHHHHHHHh------CCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQ------SPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~------~~l~~elvLiDi~~   69 (248)
                      =|.|||| |--|+++|+.|++      +++  +++|+|...
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            5999999 9999999999997      777  899999865

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=87.61  E-value=0.3  Score=36.65  Aligned_cols=102  Identities=11%  Similarity=0.078  Sum_probs=55.8

Q ss_pred             CcEEEEEcCCCccHHH-HHHHHHhCCCcceEEEEecCCc--hhhHhhhcCccCCCeEEEEcCchhhcCCCCCCeeEeEEe
Q psy14621         33 NAKVMVAGASGGIGQP-LSLLLKQSPLVDHLSLYDIVHT--PGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVPVIG  109 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~-~a~~l~~~~l~~elvLiDi~~a--~g~a~DL~~~~~~~~v~~~~~~d~~l~v~p~~V~~~ViG  109 (248)
                      ++||+|||+ |++|.. .+..+...+-++-+.++|.++.  +-.+-+.. .      ..++..+ .+   ..++++.++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-~------~~~~~~~-~l---~~~~D~V~I~   68 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-I------PYADSLS-SL---AASCDAVFVH   68 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-C------CBCSSHH-HH---HTTCSEEEEC
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-c------cccccch-hh---hhhccccccc
Confidence            479999998 999975 4556666555555678998872  22222221 1      1122211 22   1346666665


Q ss_pred             ccCCCcccccccCcc----------cCCCCChHHHHHHHHHHhhcccee
Q psy14621        110 GHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGTEV  148 (248)
Q Consensus       110 eHsGds~vp~wS~a~----------p~~~~~~~~~~~i~~~v~~~g~eI  148 (248)
                      -. .++.+..-..+-          |+. .+.++..+|.+..++.+-.+
T Consensus        69 tp-~~~h~~~~~~al~~gk~V~~EKPla-~~~~e~~~l~~~a~~~~~~~  115 (164)
T d1tlta1          69 SS-TASHFDVVSTLLNAGVHVCVDKPLA-ENLRDAERLVELAARKKLTL  115 (164)
T ss_dssp             SC-TTHHHHHHHHHHHTTCEEEEESSSC-SSHHHHHHHHHHHHHTTCCE
T ss_pred             cc-chhccccccccccccceeecccccc-CCHHHHHHHHHHHHHcCCcE
Confidence            43 233333322221          332 55667788888887776444

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.53  E-value=0.37  Score=36.27  Aligned_cols=43  Identities=23%  Similarity=0.224  Sum_probs=33.3

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADL   77 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL   77 (248)
                      +..+|.|+|+ |.||..++..+...+.  +++.+|.++ -.-.+.+|
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHH
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhcc
Confidence            4569999998 9999999999988885  677899987 23334444

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=87.46  E-value=0.24  Score=39.99  Aligned_cols=43  Identities=21%  Similarity=0.258  Sum_probs=33.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhh
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADL   77 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL   77 (248)
                      .+.+.|+||++.+|.++|..|+.++.  .+++.|+++  ++..+-++
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~   48 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYL   48 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHh
Confidence            34566779999999999999999996  799999987  44334344

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=87.45  E-value=0.32  Score=38.97  Aligned_cols=36  Identities=14%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             CCcEEEEEcCCCc--cHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGG--IGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~--VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.++|.|+||+|.  +|.++|..|+..|-  +|+|.+.++
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~   42 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDR   42 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            4568999997664  99999999999995  799999877

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.33  Score=36.56  Aligned_cols=36  Identities=31%  Similarity=0.374  Sum_probs=31.4

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|+ |.+|..++..+...+ +..++.+|.++
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G-~~~Vi~~d~~~   61 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMG-AAQVVVTDLSA   61 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEESCH
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcC-CceEEeccCCH
Confidence            3458999998 999999999999988 56899999986

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=87.43  E-value=0.31  Score=38.45  Aligned_cols=36  Identities=28%  Similarity=0.433  Sum_probs=31.4

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....+|+|||. |+||+.+|-.|..-+.  ++.-+|...
T Consensus        41 l~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~   76 (197)
T d1j4aa1          41 VRDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFR   76 (197)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             ccCCeEEEecc-cccchhHHHhHhhhcc--cccccCccc
Confidence            45679999999 9999999999998876  888899765

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.33  E-value=0.14  Score=37.67  Aligned_cols=36  Identities=17%  Similarity=0.170  Sum_probs=28.1

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhC--CCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQS--PLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~--~l~~elvLiDi~~   69 (248)
                      ..+|+|||+ |++|.-+|..|...  .+-.++.+++..+
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            459999999 99999999888642  2223899998866

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=87.33  E-value=0.41  Score=37.46  Aligned_cols=36  Identities=22%  Similarity=0.404  Sum_probs=31.2

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+..+|+|||. |+||+.+|-.+...+.  ++..+|...
T Consensus        45 l~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~   80 (191)
T d1gdha1          45 LDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHR   80 (191)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSC
T ss_pred             ecccceEEeec-ccchHHHHHHHHhhcc--ccccccccc
Confidence            34689999999 9999999999988776  889999865

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=87.29  E-value=0.13  Score=39.60  Aligned_cols=38  Identities=24%  Similarity=0.202  Sum_probs=29.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +++||+|+||+|+.|++++-++.+.+-+.=...+|...
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~   40 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREG   40 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEeccc
Confidence            56899999999999999999998876443334556543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.21  E-value=0.26  Score=41.22  Aligned_cols=36  Identities=25%  Similarity=0.470  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.+.+.|+||++.+|.++|..|+.+|.  .+++.|++.
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~   41 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGG   41 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCB
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCc
Confidence            455777889999999999999999996  799999864

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.14  E-value=0.25  Score=40.05  Aligned_cols=44  Identities=11%  Similarity=0.185  Sum_probs=35.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      .+.+.|+||++.+|.++|..|+..+.  ++++.|.++  ++-.+-++.
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~   51 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVG   51 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhC
Confidence            45777889999999999999999996  799999977  444444443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=87.13  E-value=0.35  Score=38.32  Aligned_cols=37  Identities=24%  Similarity=0.405  Sum_probs=32.6

Q ss_pred             cCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         30 DINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        30 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +-+..+|+|-|. |+||+.+|..|...|-  .++..|++.
T Consensus        24 ~L~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          24 SLDGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            346679999998 9999999999999984  789999976

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=87.11  E-value=0.36  Score=38.93  Aligned_cols=35  Identities=17%  Similarity=0.418  Sum_probs=31.0

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+.|+||++.+|.++|..|+..|.  ++++.|+++
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~   39 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVP   39 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            45677789999999999999999996  799999987

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.07  E-value=0.35  Score=36.13  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=30.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|+ |.||..++.+++..+ + +++.+|.++
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G-~-~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMG-L-HVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTT-C-EEEEEESCH
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcC-C-ccceecchh
Confidence            4569999998 999999999999998 3 789999876

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.97  E-value=0.48  Score=37.99  Aligned_cols=45  Identities=20%  Similarity=0.276  Sum_probs=34.7

Q ss_pred             CCcEEEEEcCCC--ccHHHHHHHHHhCCCcceEEEEecCC-chhhHhhhc
Q psy14621         32 NNAKVMVAGASG--GIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG--~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~DL~   78 (248)
                      +.+++.|+||+|  .+|.++|..|+..|-  +++|.|.++ ...++.++.
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~   54 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLA   54 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhh
Confidence            456889999976  599999999999995  689999887 444444443

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.91  E-value=0.27  Score=38.51  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=29.1

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      =|+|||+ |..|.++|..++..+.  +++|+|..+
T Consensus         8 DviIIG~-GPaGlsaA~~aa~~G~--~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGG-GPGGYSAAFAAADEGL--KVAIVERYK   39 (229)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            4899999 9999999999999997  899999765

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.86  E-value=0.25  Score=40.17  Aligned_cols=55  Identities=13%  Similarity=0.241  Sum_probs=40.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhcCccC-CCeEEEEc
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLSHIES-KAHVQAFN   90 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~~~~~-~~~v~~~~   90 (248)
                      +.+.|+||++.+|.++|..|+..|.  ++++.|+++  ++..+-+|..... ..++..+.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~   63 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVV   63 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEE
Confidence            3556669999999999999999995  799999987  5555666655432 33555543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.66  E-value=0.35  Score=36.43  Aligned_cols=34  Identities=18%  Similarity=0.075  Sum_probs=27.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIV   68 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~   68 (248)
                      ..||+|||+ |++|.-+|..+..++ ++.+.++-..
T Consensus        45 ~~kVvVIGG-GdtA~D~A~~a~r~G-A~~V~vi~rr   78 (153)
T d1gtea3          45 RGAVIVLGA-GDTAFDCATSALRCG-ARRVFLVFRK   78 (153)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHTT-CSEEEEECSS
T ss_pred             CCEEEEECC-ChhHHHHHHHHHHcC-CcceeEEEeC
Confidence            359999999 999999999888876 5677777543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=86.52  E-value=0.39  Score=35.54  Aligned_cols=35  Identities=14%  Similarity=0.169  Sum_probs=30.8

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++..|.|+|. |.+|..++-.|..++.  +++++|.++
T Consensus         2 ~knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~   36 (153)
T d1id1a_           2 RKDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLP   36 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccc
Confidence            3457999999 9999999999999886  799999876

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=86.48  E-value=0.41  Score=38.73  Aligned_cols=35  Identities=23%  Similarity=0.437  Sum_probs=31.5

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+.|+|+++.+|.++|..|+.++.  ++++.|+++
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~   39 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRP   39 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESST
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            45788889999999999999999995  799999987

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=86.46  E-value=0.34  Score=38.95  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=31.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+++.|+||++.+|.++|..|+.++.  ++++.|.+.
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~   39 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREE   39 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCH
Confidence            45788889999999999999999996  899999876

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=86.45  E-value=0.35  Score=39.46  Aligned_cols=45  Identities=13%  Similarity=0.321  Sum_probs=35.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC---chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH---TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~---a~g~a~DL~   78 (248)
                      +.+.+.|+||++.+|.++|..|+.++.  ++++.|.+.   ++..+-+++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~   53 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIK   53 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHH
Confidence            445778889999999999999999996  799999875   334444454

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.35  E-value=0.53  Score=36.89  Aligned_cols=42  Identities=21%  Similarity=0.147  Sum_probs=33.6

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC-chhhHhh
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH-TPGVAAD   76 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~-a~g~a~D   76 (248)
                      ++-||.|||| |.+|...+..+...+-  .+..+|++. ..-+..+
T Consensus        28 ~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~   70 (183)
T d1l7da1          28 PPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVES   70 (183)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHH
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHH
Confidence            4569999999 9999999998888774  899999988 4344333

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=86.35  E-value=0.27  Score=37.63  Aligned_cols=44  Identities=27%  Similarity=0.388  Sum_probs=35.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC--chhhHhhhc
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH--TPGVAADLS   78 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~--a~g~a~DL~   78 (248)
                      +..+|.|+|| |..+.++++.|...+  .+|.++..+.  ++..+-.+.
T Consensus        17 ~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~   62 (171)
T d1p77a1          17 PNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQ   62 (171)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHG
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHh
Confidence            4569999999 999999999998754  6899999887  555555554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=86.15  E-value=0.28  Score=40.48  Aligned_cols=32  Identities=19%  Similarity=0.373  Sum_probs=29.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      =|.|||+ |..|.++|+.|+.++.  +++|+|..+
T Consensus        25 DVvVIG~-G~aGl~aA~~la~~G~--~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGS-GGAGLAAAVSARDAGA--KVILLEKEP   56 (322)
T ss_dssp             SEEEECS-SHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             eEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999999 9999999999999996  799999765

>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

Probab=85.73  E-value=3.1  Score=33.85  Aligned_cols=46  Identities=11%  Similarity=0.139  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhcccCCCCeEEEeeEecCCC--C--CceEEEeeEEEcCCcEEEE
Q psy14621        165 AGARFAFSLIQGLKGESNVIECAYVKSDV--T--EASYFSTPVHLGKNGIEKN  213 (248)
Q Consensus       165 a~~~iv~aIl~~l~~~~~il~~s~~~g~y--g--~~v~~s~Pv~lg~~Gv~~i  213 (248)
                      .++++++||..   |++.++.+...+...  +  .+.+.=+||+|+++|+..+
T Consensus       154 ~a~~ii~ai~~---~~~~~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~  203 (278)
T d1vjta2         154 QHIPFINAIAN---NKRVRLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHRE  203 (278)
T ss_dssp             SHHHHHHHHHH---CCCEEEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEEC
T ss_pred             HHHHHHHHHhC---CCCeEEEEECCCCCcCCCCCchhheEeEEEEeCCceeee
Confidence            34689999999   888887776544433  2  7999999999999999986

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.65  E-value=0.29  Score=38.20  Aligned_cols=31  Identities=16%  Similarity=0.243  Sum_probs=27.9

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.|||+ |..|.++|..++..++  +++|+|..+
T Consensus         6 viVIG~-GpaGl~aA~~aa~~G~--kV~viE~~~   36 (235)
T d1h6va1           6 LIIIGG-GSGGLAAAKEAAKFDK--KVMVLDFVT   36 (235)
T ss_dssp             EEEECC-SHHHHHHHHHHGGGCC--CEEEECCCC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            899999 9999999999999997  899999543

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=85.62  E-value=0.44  Score=36.37  Aligned_cols=107  Identities=16%  Similarity=0.146  Sum_probs=58.1

Q ss_pred             CCCcEEEEEcCCCccHHHH-HHHHHhC-CCcceEEEEecCC--chhhHhhhcCccCCCeEEEEcCchhhcCCCCCCeeEe
Q psy14621         31 INNAKVMVAGASGGIGQPL-SLLLKQS-PLVDHLSLYDIVH--TPGVAADLSHIESKAHVQAFNGADQLKGLNPTDVNVP  106 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~-a~~l~~~-~l~~elvLiDi~~--a~g~a~DL~~~~~~~~v~~~~~~d~~l~v~p~~V~~~  106 (248)
                      ++++||+|||+ |.+|... +..+... +.++=..++|.++  ++-.+-+...      ...|.+.++.+  +-.++++.
T Consensus         1 MkkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~------~~~~~~~~ell--~~~~id~v   71 (181)
T d1zh8a1           1 LRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN------PAVFDSYEELL--ESGLVDAV   71 (181)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS------CEEESCHHHHH--HSSCCSEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccc------cceeeeeeccc--ccccccee
Confidence            35689999999 9999864 5555553 3333344888876  2222222221      12344433222  23456666


Q ss_pred             EEeccCCCcccccccCcc----------cCCCCChHHHHHHHHHHhhcccee
Q psy14621        107 VIGGHAGITIIPLISQAT----------PSVSFPDDQLKALTGRIQEAGTEV  148 (248)
Q Consensus       107 ViGeHsGds~vp~wS~a~----------p~~~~~~~~~~~i~~~v~~~g~eI  148 (248)
                      ++.-. .++-...-..+-          |+ ..+.++..++.+..++.+-.+
T Consensus        72 ~I~tp-~~~h~~~~~~al~~gk~V~~EKPl-~~~~~e~~~l~~~~~~~~~~~  121 (181)
T d1zh8a1          72 DLTLP-VELNLPFIEKALRKGVHVICEKPI-STDVETGKKVVELSEKSEKTV  121 (181)
T ss_dssp             EECCC-GGGHHHHHHHHHHTTCEEEEESSS-SSSHHHHHHHHHHHHHCSSCE
T ss_pred             ecccc-ccccccccccccccchhhhcCCCC-cCCHHHHHHHHHHHHHhCCeE
Confidence            66644 333333322221          43 256667778888887766444

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=85.48  E-value=0.39  Score=38.91  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=30.4

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+.|+||++.+|.++|..|+..|.  +++|.|.++
T Consensus         4 gK~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~   38 (260)
T d1x1ta1           4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGD   38 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSC
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            34667779999999999999999996  799999976

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.20  E-value=0.34  Score=37.59  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=29.4

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..|.|||+ |..|.++|..++..+.  +++|+|-+.
T Consensus         6 ~DlvVIG~-GpaGl~aA~~aa~~G~--~V~liE~~~   38 (220)
T d1lvla1           6 TTLLIIGG-GPGGYVAAIRAGQLGI--PTVLVEGQA   38 (220)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             cCEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            36999998 9999999999999997  899999654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=85.09  E-value=0.62  Score=35.54  Aligned_cols=36  Identities=19%  Similarity=0.184  Sum_probs=31.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|+ |.||...+..+...+ +..++..|.++
T Consensus        28 ~G~~VlV~G~-G~iGl~a~~~ak~~G-a~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGL-GCVGLSAIIGCKIAG-ASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHHhC-Cceeeeeccch
Confidence            4459999998 999999999999988 67899999987

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.06  E-value=0.43  Score=37.06  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=28.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.||+|.|. |++|..++-.+..++-++-+.+-|..+
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~   36 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSP   36 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSC
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCC
Confidence            469999998 999999999999988665455556544

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.94  E-value=0.51  Score=34.99  Aligned_cols=108  Identities=18%  Similarity=0.276  Sum_probs=62.8

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCchhhHhhhcCccCCCeEEE-EcCch---------hhcCCCCCCee
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHTPGVAADLSHIESKAHVQA-FNGAD---------QLKGLNPTDVN  104 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a~g~a~DL~~~~~~~~v~~-~~~~d---------~~l~v~p~~V~  104 (248)
                      ||+|+||+|..|+.++-.+...+-+.=..-+|..+..+...|     .++.|.+ |+.++         .+.++      
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~~~-----~~~DvvIDFS~p~~~~~~~~~~~~~~~------   69 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTD-----GNTEVVIDFTHPDVVMGNLEFLIDNGI------   69 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHHHT-----TTCSEEEECCCTTTHHHHHHHHHHTTC------
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhhcc-----ccCCEEEEcccHHHHHHHHHHHHhcCC------
Confidence            899999999999999998887665544455676542222111     1233332 44322         22233      


Q ss_pred             EeEEeccCCCcccccccCcccCCCCChHHHHHHHHHHh-hccceeeeccCCCCchhHHHHHHHH-HHHHHHhc
Q psy14621        105 VPVIGGHAGITIIPLISQATPSVSFPDDQLKALTGRIQ-EAGTEVVKAKAGAGSATLSMAYAGA-RFAFSLIQ  175 (248)
Q Consensus       105 ~~ViGeHsGds~vp~wS~a~p~~~~~~~~~~~i~~~v~-~~g~eIi~~k~gkgst~~siA~a~~-~iv~aIl~  175 (248)
                      .+|+|=. |               +++++.++|.+.+. ....-|+-      ++++|++..+. ++++-+..
T Consensus        70 ~~ViGTT-G---------------~~~~~~~~l~~~~~~~~~ipil~------apNfSlGvnll~~l~~~aa~  120 (135)
T d1yl7a1          70 HAVVGTT-G---------------FTAERFQQVESWLVAKPNTSVLI------APNFTSFVPGVLLAVRRIAE  120 (135)
T ss_dssp             EEEECCC-C---------------CCHHHHHHHHHHHHSCTTCEEEE------CSCCGGGHHHHHHHHHHGGG
T ss_pred             CEEEecc-c---------------cchhHHHHHHHHHHhcCCCCEEE------cCCccHHHHHHHHHHHHHHH
Confidence            2466654 4               77788787777543 22233444      57888886543 45555544

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.90  E-value=0.15  Score=38.82  Aligned_cols=38  Identities=26%  Similarity=0.249  Sum_probs=27.9

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..++||+|||+ |++|...+..+...+-...+.++|...
T Consensus         5 ~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~   42 (172)
T d1lc0a1           5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVS   42 (172)
T ss_dssp             CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEEC
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence            45689999999 999998877776654444566666543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=84.87  E-value=0.48  Score=35.97  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=30.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .-+|.|+|| |.||..++..+...+. ..++.+|.++
T Consensus        29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~   63 (182)
T d1vj0a2          29 GKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSP   63 (182)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCH
T ss_pred             CCEEEEECC-Cccchhheeccccccc-cccccccccc
Confidence            459999998 9999999999999884 5899999976

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=84.61  E-value=0.6  Score=36.06  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=31.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++-||.|||+ |.+|...+..++..+-  ++..+|.+.
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcH
Confidence            4679999999 9999999999998884  799999987

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.59  E-value=0.38  Score=36.90  Aligned_cols=32  Identities=19%  Similarity=0.215  Sum_probs=28.4

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      -|.|||+ |..|.++|..++..++  +++|+|...
T Consensus         5 DviVIG~-GpaGl~aA~~aar~G~--kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGA-GPGGYVAAIRAAQLGQ--KVTIVEKGN   36 (223)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEecCC
Confidence            4899998 9999999999999996  899998654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=84.55  E-value=0.44  Score=36.37  Aligned_cols=36  Identities=17%  Similarity=0.027  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +..+|.|+|+ |.||..++.++...+. ..++.+|.++
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCH
T ss_pred             CCCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchh
Confidence            4458999998 9999999999998774 5789999876

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=84.55  E-value=0.56  Score=35.01  Aligned_cols=35  Identities=26%  Similarity=0.168  Sum_probs=30.5

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ...+|.|+|+ |.||..++..+...+.  +++.+|.++
T Consensus        26 ~g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~   60 (170)
T d1e3ja2          26 LGTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSP   60 (170)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEEcc-cccchhhHhhHhhhcc--cccccchHH
Confidence            3459999997 9999999999999984  799999876

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.54  E-value=0.29  Score=37.51  Aligned_cols=32  Identities=28%  Similarity=0.278  Sum_probs=28.3

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      =|.|||+ |.-|.++|..++..++  +++|+|..+
T Consensus         5 DviIIGg-GpAGl~aA~~aar~G~--~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGA-GPGGYVAAIKSAQLGL--KTALIEKYK   36 (229)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEEECCB
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccc
Confidence            3899999 9999999999999987  799999643

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.20  E-value=0.52  Score=37.12  Aligned_cols=39  Identities=18%  Similarity=0.309  Sum_probs=29.9

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCc-ceEEEEecCCchhh
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLV-DHLSLYDIVHTPGV   73 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~-~elvLiDi~~a~g~   73 (248)
                      .||.|||+ |.-|.++|..+++.+.- ..++|+|....=|.
T Consensus         2 ~~viVIG~-GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~   41 (233)
T d1xdia1           2 TRIVILGG-GPAGYEAALVAATSHPETTQVTVIDCDGIGGA   41 (233)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHCTTTEEEEEEESSCTTHH
T ss_pred             cEEEEECC-CHHHHHHHHHHHHcCCCCCEEEEEecCCCCce
Confidence            59999999 99999999887765543 36889997554443

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=84.11  E-value=0.52  Score=36.54  Aligned_cols=36  Identities=25%  Similarity=0.251  Sum_probs=31.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....+|+|||. |+||..+|-.|...+.  ++..+|...
T Consensus        42 l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~   77 (188)
T d2naca1          42 LEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHR   77 (188)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSC
T ss_pred             ccccceeeccc-cccchhhhhhhhccCc--eEEEEeecc
Confidence            35679999999 9999999999988766  799999865

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=84.02  E-value=0.56  Score=38.03  Aligned_cols=39  Identities=18%  Similarity=0.291  Sum_probs=32.5

Q ss_pred             ccCCCcEEEEEcCCC--ccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         29 YDINNAKVMVAGASG--GIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        29 ~~~~~~KV~IiGaaG--~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .+.+.+++.|+||+|  -+|.++|..|+..|-  ++++.|.++
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga--~Vvi~~~~~   44 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWVP   44 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            344667999999966  699999999999995  789988765

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.72  E-value=0.43  Score=36.71  Aligned_cols=32  Identities=13%  Similarity=0.090  Sum_probs=28.3

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCc
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHT   70 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a   70 (248)
                      |.|||+ |..|.++|..++..+.  +++|+|-...
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~--kV~vIEk~~~   37 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGA--RAAVVESHKL   37 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSCT
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--EEEEEeccCC
Confidence            789999 9999999999999986  8999986543

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=83.57  E-value=0.44  Score=39.14  Aligned_cols=31  Identities=19%  Similarity=0.289  Sum_probs=28.4

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |.|||+ |.-|.+.|+.|+.+++  +++|++..+
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~--~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGL--STIVLSLIP   38 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTC--CEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCC--CEEEEecCC
Confidence            899998 9999999999999996  699998765

>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=83.26  E-value=4.2  Score=33.56  Aligned_cols=56  Identities=16%  Similarity=0.178  Sum_probs=42.0

Q ss_pred             HHHHHHHHhcccCCCCeEEEeeEecCCC--C--CceEEEeeEEEcCCcEEEEe-cCCCCCHHHHH
Q psy14621        166 GARFAFSLIQGLKGESNVIECAYVKSDV--T--EASYFSTPVHLGKNGIEKNL-GLGKLSDFEKE  225 (248)
Q Consensus       166 ~~~iv~aIl~~l~~~~~il~~s~~~g~y--g--~~v~~s~Pv~lg~~Gv~~i~-~l~~Ls~~E~~  225 (248)
                      ++++++||.+   |++.++.+...+...  +  .+.+.=+||+|+++|+..+- .- +|-+.-..
T Consensus       184 a~~ii~ai~~---~~~~~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~-~lP~~~~~  244 (308)
T d1obba2         184 HIPFIDALLN---DNKARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEP-PLPDRVVK  244 (308)
T ss_dssp             HHHHHHHHHH---CCCEEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSS-CCCHHHHH
T ss_pred             HHHHHHHHHc---CCCeEEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCC-CCChHHHH
Confidence            7889999999   888888776555433  2  79999999999999999963 22 35554433

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=83.17  E-value=1.2  Score=35.91  Aligned_cols=56  Identities=30%  Similarity=0.373  Sum_probs=35.7

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEE-ecCCchhhHhhhcCccCCCeEEEE
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLY-DIVHTPGVAADLSHIESKAHVQAF   89 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLi-Di~~a~g~a~DL~~~~~~~~v~~~   89 (248)
                      +...|.|+|+++.||..+|..|+.++.  .++++ |.++-.-.+.++.-.....++..+
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~   60 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFH   60 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEE
Confidence            456899999999999999999999985  45555 444422222333322334455544

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.95  E-value=1.3  Score=34.09  Aligned_cols=41  Identities=27%  Similarity=0.220  Sum_probs=33.8

Q ss_pred             cccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |........+|+|+|. |++|..+|..+...+.  ++..+|...
T Consensus        37 ~~~~~l~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~   77 (184)
T d1ygya1          37 FSGTEIFGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYV   77 (184)
T ss_dssp             CCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTS
T ss_pred             cccccccceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCC
Confidence            4444556789999999 9999999999987765  899999765

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=82.93  E-value=0.52  Score=37.70  Aligned_cols=32  Identities=16%  Similarity=0.218  Sum_probs=28.8

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCCc
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVHT   70 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~a   70 (248)
                      |.|||+ |..|.++|..+++.+.  +++|+|....
T Consensus         4 viVIG~-G~aG~~aA~~aa~~G~--~V~liE~~~~   35 (259)
T d1onfa1           4 LIVIGG-GSGGMAAARRAARHNA--KVALVEKSRL   35 (259)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSST
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--eEEEEecCCC
Confidence            789999 9999999999999997  8999997543

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=82.88  E-value=0.44  Score=39.69  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=27.2

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      =|.|||+ |.-|..+|+.|+..++  .++|++.
T Consensus         4 ~VIVVGs-G~aG~v~A~rLaeaG~--~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGT-GYGAAVSALRLGEAGV--QTLMLEM   33 (367)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEES
T ss_pred             eEEEeCc-CHHHHHHHHHHHHCcC--eEEEEec
Confidence            4899998 9999999999999986  7888986

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=82.74  E-value=0.37  Score=39.78  Aligned_cols=33  Identities=33%  Similarity=0.419  Sum_probs=29.8

Q ss_pred             cEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         34 AKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        34 ~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      .-|.|||+ |..|.++|+.++.++.  +++|+|..+
T Consensus        20 ~DVvVIGa-G~aGl~AA~~aa~~G~--~V~vlEK~~   52 (317)
T d1qo8a2          20 TQVLVVGA-GSAGFNASLAAKKAGA--NVILVDKAP   52 (317)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSS
T ss_pred             cCEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            46999999 9999999999999996  799999765

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.03  E-value=0.74  Score=35.36  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++||+|.|- |+||..++..+..++-++-+.+-|+.+
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~   37 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKP   37 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSC
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCC
Confidence            369999999 999999999998887665555666654

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=82.00  E-value=0.59  Score=35.34  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=27.9

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.||+|+|++|.||..+.--+...+--=+++.+=.+.
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            5699999999999999888887765322566665544

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.99  E-value=0.71  Score=36.84  Aligned_cols=38  Identities=26%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ++..|.|+||++.+|.++|..|+.++-.-.+++.+.+.
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~   39 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV   39 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCH
Confidence            34578888999999999999999998544677777765

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.91  E-value=0.6  Score=37.09  Aligned_cols=44  Identities=16%  Similarity=0.290  Sum_probs=34.5

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC---chhhHhhhcCc
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH---TPGVAADLSHI   80 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~---a~g~a~DL~~~   80 (248)
                      -..|+||++.+|.++|..|+..|.  ++++.|.+.   ++-.+-++...
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~~~~~~~~~~~~~~~   49 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAA   49 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHHHhh
Confidence            357889999999999999999996  899999986   33344455443

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.68  E-value=0.42  Score=39.35  Aligned_cols=36  Identities=14%  Similarity=0.252  Sum_probs=29.6

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..+|+|||+ |..|.++|+.|+.+..--++.++|.+.
T Consensus        50 ~~~~~~~g~-g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          50 VSDVIIVGA-GSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             EESEEEECC-SHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            357999999 999999999999753223899999876

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=81.60  E-value=0.68  Score=37.45  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             cccccCCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         26 LSLYDINNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        26 ~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      |-..+....+|+|-|- |+||+.+|..|...+-  .++..|++.
T Consensus        32 ~g~~~l~g~~v~IqG~-GnVG~~~a~~L~~~Ga--kvv~~d~~~   72 (230)
T d1leha1          32 FGSDSLEGLAVSVQGL-GNVAKALCKKLNTEGA--KLVVTDVNK   72 (230)
T ss_dssp             HSSCCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             cCCCCCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEeecccH
Confidence            3344556789999999 9999999999999985  788999876

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=81.42  E-value=0.82  Score=36.67  Aligned_cols=41  Identities=20%  Similarity=0.262  Sum_probs=31.0

Q ss_pred             EEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC---chhhHhhhc
Q psy14621         36 VMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH---TPGVAADLS   78 (248)
Q Consensus        36 V~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~---a~g~a~DL~   78 (248)
                      +.|+|+++.+|.++|..|+..|.  ++++.|.+.   ++...-+|+
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~l~   48 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAAEANALSATLN   48 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCCHHHHHHHHHHHH
Confidence            45569989999999999999995  788888765   344444443

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.23  E-value=0.89  Score=35.09  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=31.1

Q ss_pred             CCCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         31 INNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        31 ~~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ....+|+|||. |+||..+|-.|...+.  ++..+|...
T Consensus        42 l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~   77 (188)
T d1sc6a1          42 ARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIEN   77 (188)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             ccceEEEEeec-ccchhhhhhhcccccc--eEeeccccc
Confidence            35679999999 9999999999988876  899999764

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=80.99  E-value=0.59  Score=38.41  Aligned_cols=30  Identities=27%  Similarity=0.520  Sum_probs=27.0

Q ss_pred             EEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         35 KVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        35 KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      =|+|||+ |.-|..+|..|+..++  ++++++.
T Consensus         6 DviIVGs-G~aG~v~A~~La~~G~--kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGS-GPIGCTYARELVGAGY--KVAMFDI   35 (379)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--EEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHhhCCC--eEEEEec
Confidence            4899998 9999999999999986  7888875

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.82  E-value=0.68  Score=34.10  Aligned_cols=33  Identities=18%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEec
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDI   67 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi   67 (248)
                      +.++|.|||+ |.||..-|..|...+-  ++.+++.
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeC
Confidence            4579999999 9999999999999985  8899964

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.61  E-value=1.2  Score=33.71  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=31.1

Q ss_pred             CCcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         32 NNAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        32 ~~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      +.-.|.|+|+ |.+|...+..++..+ +.+++.+|.++
T Consensus        29 ~g~tVlI~G~-GgvGl~ai~~ak~~G-~~~Vi~vd~~~   64 (176)
T d1d1ta2          29 PGSTCVVFGL-GGVGLSVIMGCKSAG-ASRIIGIDLNK   64 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSCG
T ss_pred             CCCEEEEECC-CchhHHHHHHHHHcC-CceEEEecCcH
Confidence            3457999998 999999999999887 46899999987

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.39  E-value=0.57  Score=42.38  Aligned_cols=35  Identities=17%  Similarity=0.170  Sum_probs=30.8

Q ss_pred             CcEEEEEcCCCccHHHHHHHHHhCCCcceEEEEecCC
Q psy14621         33 NAKVMVAGASGGIGQPLSLLLKQSPLVDHLSLYDIVH   69 (248)
Q Consensus        33 ~~KV~IiGaaG~VG~~~a~~l~~~~l~~elvLiDi~~   69 (248)
                      ..||.|||+ |.+|+.+|-.|+..|+ ..+.|+|-+.
T Consensus        25 ~s~VlvvG~-gglG~Ei~knLvl~GV-g~itivD~d~   59 (529)
T d1yova1          25 SAHVCLINA-TATGTEILKNLVLPGI-GSFTIIDGNQ   59 (529)
T ss_dssp             HCEEEECCC-SHHHHHHHHHHHTTTC-SEEEEECCSB
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHhcC-CEEEEEcCCc
Confidence            359999999 9999999999999985 7899998754

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.01  E-value=0.61  Score=38.31  Aligned_cols=25  Identities=36%  Similarity=0.590  Sum_probs=22.1

Q ss_pred             cEEEEE-cCCCccHHHHHHHHHhCCC
Q psy14621         34 AKVMVA-GASGGIGQPLSLLLKQSPL   58 (248)
Q Consensus        34 ~KV~Ii-GaaG~VG~~~a~~l~~~~l   58 (248)
                      +||++| ||++.||.++|..|+..+-
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga   27 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS   27 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC
Confidence            588765 9999999999999999884