Psyllid ID: psy14701

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQATKHQNRDVYKLDIKIDV
Secondary Structure (PSIPRED)
ccEEEEccEEEEccEEEEcccEEEEcccccccccHHHHHHHHHHcccccEEEEEcccccccccccHHcHHHHHcccEEEEcccHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccEEEEEEEEEEcccEEccccccHHHccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHHHHHHccccEEEEEEcc
Coil and Loop (DISEMBL)
fgfrlsnnsvvvgpLAVFNKCVfswnilddsdinMESLSLFLHLEPKLDVLIIGLgdfkfnhtklipVINEVrkhcnvevlpteRAIATFNFMVSEGrvagaalvppvrisfteEDIQAtkhqnrdvykldikidv
Flexible Loop (DISEMBL)
fgfrlsnnsvvVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTeediqatkhqnrdvykldikidv
Low Complexity Region (SEG)
FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQATKHQNRDVYKLDIKIDV
Disordered region (IsUnstruct)
*******NSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQAT*****DVYKL******
Disordered Region (DISOPRED)
FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISF********************KI**
Disordered Region (DISEMBL)
FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQATKHQNRDVYKLDIKIDV
Disordered Region (DISPRO)
FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQATKHQNRDVYKLDIKIDV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQATKHQNRDVYKLDIKIDV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q6DFN1	183	NADH dehydrogenase [ubiqu	yes	N/A	0.720	0.535	0.466	4e-17
Q2HJI2	184	NADH dehydrogenase [ubiqu	yes	N/A	0.823	0.608	0.401	5e-16
O08776	185	NADH dehydrogenase [ubiqu	yes	N/A	0.757	0.556	0.383	1e-15
Q9JKL4	185	NADH dehydrogenase [ubiqu	yes	N/A	0.75	0.551	0.416	5e-15
Q9BU61	184	NADH dehydrogenase [ubiqu	yes	N/A	0.757	0.559	0.392	5e-15
A1L1F1	174	NADH dehydrogenase [ubiqu	yes	N/A	0.683	0.534	0.434	3e-12

>sp|Q6DFN1|NDUF3_XENTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus tropicalis GN=ndufaf3 PE=2 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 63/103 (61%), Gaps = 5/103 (4%)

Query: 7   NNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLI 66
           N   VVGP AV  K +  WN+    DIN+ESLSLF  L P++++L++G GD      +L 
Sbjct: 76  NGDKVVGPCAVIPKAILQWNVGSYKDINLESLSLFHMLSPRIEILVVGTGD---RVERLD 132

Query: 67  PVINEV--RKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
           P I +   +K   VEV  T  A ATFNF+VSE R+  AAL+PP
Sbjct: 133 PNILKFMRQKGVAVEVQDTANACATFNFLVSERRITAAALIPP 175

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
Xenopus tropicalis (taxid: 8364)

>sp|Q2HJI2|NDUF3_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Bos taurus GN=NDUFAF3 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 5/117 (4%)

Query: 7   NNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLI 66
           N + V GP A+  + V  WN+    DI  ES SLF  LEP+++++++G GD      +L 
Sbjct: 71  NGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGD---RTERLQ 127

Query: 67  P-VINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQATK 121
           P V+  +R+    VEV  T  A ATFNF+  EGRV GAAL+PP   +      QA +
Sbjct: 128 PHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTALTSQAQAAE 184

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Bos taurus (taxid: 9913)

>sp|O08776|NDUF3_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Rattus norvegicus GN=Ndufaf3 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 4/107 (3%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
           GF ++ N V  GP A+  + V  WN+    DI  ES S+F  LEP+++++++G G+    
Sbjct: 68  GFTINGNRVF-GPCALLPQTVVQWNVGSHQDITEESFSIFWMLEPRIEIVVVGTGNKTER 126

Query: 62  -HTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
            H++++  + +  +   VE+  T  A ATFNF+  EGRV GAAL+PP
Sbjct: 127 LHSQVLQAMRQ--RGIAVEIQDTPNACATFNFLCHEGRVTGAALIPP 171

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Rattus norvegicus (taxid: 10116)

>sp|Q9JKL4|NDUF3_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Mus musculus GN=Ndufaf3 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 63/108 (58%), Gaps = 6/108 (5%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
           GF +  N V  GP  +  + V  WN+    DI  ES SLF  LEP+++++++G G+    
Sbjct: 68  GFTICGNRVF-GPCVLLPQTVVQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTGN---K 123

Query: 62  HTKLIP-VINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
             +L P V+  +R+    VEV  T  A ATFNF+  EGRV GAAL+PP
Sbjct: 124 TERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPP 171

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Mus musculus (taxid: 10090)

>sp|Q9BU61|NDUF3_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Homo sapiens GN=NDUFAF3 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 4/107 (3%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
           GF ++ N V+ GP A+    V  WN+    DI  +S SLF  LEP+++++++G GD    
Sbjct: 67  GFMINGNRVL-GPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTER 125

Query: 62  -HTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
             ++++  + +  +   VEV  T  A ATFNF+  EGRV GAAL+PP
Sbjct: 126 LQSQVLQAMRQ--RGIAVEVQDTPNACATFNFLCHEGRVTGAALIPP 170

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Homo sapiens (taxid: 9606)

>sp|A1L1F1|NDUF3_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Danio rerio GN=ndufaf3 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 60/99 (60%), Gaps = 6/99 (6%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
           GF ++ N+V  GP AV    +  WN+   SDI++ESLSLF  LEP+++VL++G G     
Sbjct: 66  GFNINGNTVF-GPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGARTER 124

Query: 62  -HTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGR 98
            H +   V+ E++K    VEV  T  A ATFNF+ SE R
Sbjct: 125 LHAE---VLEELKKRGIAVEVQDTPNACATFNFLSSEKR 160

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
195382469	197	GJ21869 [Drosophila virilis] gi|19414474	0.963	0.664	0.507	6e-29
195028322	198	GH21686 [Drosophila grimshawi] gi|193903	0.963	0.661	0.484	4e-28
195122782	198	GI18840 [Drosophila mojavensis] gi|19391	0.963	0.661	0.469	1e-27
125806995	196	GA18977 [Drosophila pseudoobscura pseudo	0.963	0.668	0.492	2e-27
157119769	189	hypothetical protein AaeL_AAEL008811 [Ae	0.970	0.698	0.481	7e-27
170075005	191	conserved hypothetical protein [Culex qu	0.955	0.680	0.480	2e-26
170043128	191	conserved hypothetical protein [Culex qu	0.955	0.680	0.480	2e-26
194754277	196	GF12867 [Drosophila ananassae] gi|190620	0.963	0.668	0.462	3e-26
195431555	204	GK15710 [Drosophila willistoni] gi|19415	0.963	0.642	0.477	3e-26
312375320	189	hypothetical protein AND_14308 [Anophele	0.860	0.619	0.491	4e-26

>gi|195382469|ref|XP_002049952.1| GJ21869 [Drosophila virilis] gi|194144749|gb|EDW61145.1| GJ21869 [Drosophila virilis]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 67/132 (50%), Positives = 91/132 (68%), Gaps = 1/132 (0%)

Query: 1   FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKF 60
           +GFRL+NN V++GP+ VF + V SWNI    DIN ESLSLF  LEPK+DVLIIG+GD   
Sbjct: 66  YGFRLNNNMVLIGPITVFPRSVLSWNINSFDDINEESLSLFPTLEPKIDVLIIGIGDQNP 125

Query: 61  NHTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQA 119
                  +I  ++K+  NVEVL TE+A ATFNF+ +EGR+   AL+PP+ IS+ E D+  
Sbjct: 126 TPNLTKRIIKFMKKYKTNVEVLRTEQACATFNFLNAEGRMVACALIPPLHISYNENDVLQ 185

Query: 120 TKHQNRDVYKLD 131
           TK + + +Y+ D
Sbjct: 186 TKLKQKQLYETD 197

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028322|ref|XP_001987025.1| GH21686 [Drosophila grimshawi] gi|193903025|gb|EDW01892.1| GH21686 [Drosophila grimshawi]

 Score =  129 bits (324), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 64/132 (48%), Positives = 92/132 (69%), Gaps = 1/132 (0%)

Query: 1   FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKF 60
           +GFRL+NN V++GP+ VF + V SWN+    DIN ESLS+F  LEPK+DVLIIG+GD   
Sbjct: 67  YGFRLNNNMVLLGPITVFPRSVLSWNVNSFEDINEESLSIFPTLEPKIDVLIIGIGDQSP 126

Query: 61  NHTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQA 119
             T    +I  ++K+  NVEVL TE+A ATFNF+ +EGR+   AL+PP+ +S+ E D+  
Sbjct: 127 TPTLSKRIIAYMKKYKTNVEVLRTEQACATFNFLNAEGRMVACALIPPLHLSYNENDVLQ 186

Query: 120 TKHQNRDVYKLD 131
           TK + + +Y+ +
Sbjct: 187 TKLRQKQLYETE 198

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195122782|ref|XP_002005890.1| GI18840 [Drosophila mojavensis] gi|193910958|gb|EDW09825.1| GI18840 [Drosophila mojavensis]

 Score =  127 bits (319), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 92/132 (69%), Gaps = 1/132 (0%)

Query: 1   FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKF 60
           +GFRL+NN V++GP+ VF + V SWN+    DI  ESLSLF  LEPK+DVLIIG+GD   
Sbjct: 67  YGFRLNNNMVLIGPITVFPRSVLSWNVNSFEDITEESLSLFPTLEPKIDVLIIGIGDQSP 126

Query: 61  NHTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQA 119
             +    +I  ++K+  NVE+L TE+A ATFNF+ +EGR+A  AL+PP+ I++ E D+  
Sbjct: 127 TASLTKRIIKFMKKYNINVEILRTEQACATFNFLNAEGRMAACALIPPLHITYNENDVLQ 186

Query: 120 TKHQNRDVYKLD 131
           +K + + +Y+ +
Sbjct: 187 SKLKQQQLYETE 198

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125806995|ref|XP_001360220.1| GA18977 [Drosophila pseudoobscura pseudoobscura] gi|195149349|ref|XP_002015620.1| GL11170 [Drosophila persimilis] gi|54635391|gb|EAL24794.1| GA18977 [Drosophila pseudoobscura pseudoobscura] gi|194109467|gb|EDW31510.1| GL11170 [Drosophila persimilis]

 Score =  127 bits (319), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 93/132 (70%), Gaps = 1/132 (0%)

Query: 1   FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKF 60
           +GFRL+N+ V++GP++VF + V SWN+    DIN ESLSLF  L+PK+DVLIIG+GD   
Sbjct: 65  YGFRLNNDMVLIGPISVFPRSVLSWNVNTFEDINEESLSLFPTLDPKIDVLIIGIGDQSP 124

Query: 61  NHTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQA 119
           +      +I  ++KH  NVEVL TE+A ATFNF+ +E R+   AL+PP+ IS+ E DI  
Sbjct: 125 SPPLSKRIIEFMKKHKINVEVLRTEQACATFNFLNAENRMVACALIPPLHISYNENDILQ 184

Query: 120 TKHQNRDVYKLD 131
           TK + +++Y+ D
Sbjct: 185 TKLKQKELYETD 196

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119769|ref|XP_001659497.1| hypothetical protein AaeL_AAEL008811 [Aedes aegypti] gi|108875150|gb|EAT39375.1| AAEL008811-PA [Aedes aegypti]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 89/133 (66%), Gaps = 1/133 (0%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
           GFRLSN+  V+GP+A+F + V SWN+    DI  ESLSLF  LEPK+D+L+IG+GD +  
Sbjct: 57  GFRLSNDMKVIGPMAIFPRSVLSWNVESHEDITEESLSLFTALEPKIDILVIGIGDQQTT 116

Query: 62  HTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQAT 120
                 +I  ++K+  NVEVL TE+A ATFNF+ +E RV  AAL+PPV + F E+D+  T
Sbjct: 117 PAFTKKIIEFMKKYRINVEVLNTEQACATFNFLNAESRVVAAALIPPVSLRFNEDDLMRT 176

Query: 121 KHQNRDVYKLDIK 133
              +   ++LD K
Sbjct: 177 HIASSRPFELDEK 189

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170075005|ref|XP_001870648.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167872057|gb|EDS35440.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 88/131 (67%), Gaps = 1/131 (0%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
           GFRLSN+ VV+GP+A+F + V SWN+    DIN +SLSLF  LEPK+D+LI+G+GD    
Sbjct: 59  GFRLSNDMVVLGPMALFPRTVLSWNVESHEDINEQSLSLFAALEPKVDILIVGIGDHPMT 118

Query: 62  HTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQAT 120
                 VI+ + KH  NVEVL TE+A ATFNF+ +EGRV  AAL+PPV +   E+D+   
Sbjct: 119 PAFGKKVISFMAKHKINVEVLNTEQACATFNFLNAEGRVVAAALIPPVTMRINEDDMMRR 178

Query: 121 KHQNRDVYKLD 131
           +      ++++
Sbjct: 179 QISKSKTFEVE 189

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043128|ref|XP_001849251.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167866565|gb|EDS29948.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 88/131 (67%), Gaps = 1/131 (0%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
           GFRLSN+ VV+GP+A+F + V SWN+    DIN +SLSLF  LEPK+D+LI+G+GD    
Sbjct: 59  GFRLSNDMVVLGPMALFPRTVLSWNVESHEDINEQSLSLFAALEPKVDILIVGIGDHPMT 118

Query: 62  HTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQAT 120
                 VI+ + KH  NVEVL TE+A ATFNF+ +EGRV  AAL+PPV +   E+D+   
Sbjct: 119 PAFGKKVISFMAKHKINVEVLNTEQACATFNFLNAEGRVVAAALIPPVTMRINEDDMMRR 178

Query: 121 KHQNRDVYKLD 131
           +      ++++
Sbjct: 179 QISKSKTFEVE 189

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194754277|ref|XP_001959422.1| GF12867 [Drosophila ananassae] gi|190620720|gb|EDV36244.1| GF12867 [Drosophila ananassae]

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 92/132 (69%), Gaps = 1/132 (0%)

Query: 1   FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKF 60
           +GFRL+N+ V++GP++VF + V SWN+    DIN ESLSLF  LEPK+DVLIIG+GD   
Sbjct: 65  YGFRLNNDMVLIGPISVFPRSVLSWNVNSFEDINEESLSLFPTLEPKIDVLIIGIGDQSP 124

Query: 61  NHTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQA 119
             +    ++  ++K+  NVEVL TE+A ATFNF+ +E R+   AL+PP+ +++ E DI  
Sbjct: 125 PPSLSKRIVEFMKKYKINVEVLRTEQACATFNFLNAENRMVACALIPPLHVTYNENDILQ 184

Query: 120 TKHQNRDVYKLD 131
            K + +++Y+ D
Sbjct: 185 AKLKKKELYETD 196

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195431555|ref|XP_002063802.1| GK15710 [Drosophila willistoni] gi|194159887|gb|EDW74788.1| GK15710 [Drosophila willistoni]

 Score =  122 bits (307), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/132 (47%), Positives = 91/132 (68%), Gaps = 1/132 (0%)

Query: 1   FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKF 60
           +GFRL+N+ V++GP+ VF + V SWN+    DIN +SLSLF  L+PKLDVLIIG+GD   
Sbjct: 73  YGFRLNNDMVLIGPITVFPRSVLSWNVNTFEDINEQSLSLFPILDPKLDVLIIGIGDQSP 132

Query: 61  NHTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQA 119
                  +I  ++K+  NVEVL TE+A ATFNF+ +E R+   AL+PP+ +S+ E DI  
Sbjct: 133 TPALSKRIIEFMKKYKINVEVLRTEQACATFNFLNAESRMVACALIPPLHLSYNENDILQ 192

Query: 120 TKHQNRDVYKLD 131
           TK +++ +Y+ D
Sbjct: 193 TKLKHQQLYETD 204

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375320|gb|EFR22716.1| hypothetical protein AND_14308 [Anopheles darlingi]

 Score =  122 bits (307), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 86/118 (72%), Gaps = 1/118 (0%)

Query: 1   FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKF 60
           +GFRL+N+ VV+GP+A+F++ V SWN+    DIN  SLSLF  +EPK+DVL++G+GD   
Sbjct: 56  YGFRLNNDMVVLGPMALFSRTVLSWNVESHEDINDASLSLFCAIEPKIDVLVVGIGDQTI 115

Query: 61  NHTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDI 117
             T    +I+ ++++  NVEVL TE+A ATFNF+ +E RV  AAL+PP+ +  TE+D+
Sbjct: 116 TPTFSRKIIDFMKRYKINVEVLGTEQACATFNFLNAENRVVAAALIPPITMRLTEDDL 173

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
FB|FBgn0034919	196	CG5569 [Drosophila melanogaste	0.963	0.668	0.454	5.7e-27
WB|WBGene00011123	295	nuaf-3 [Caenorhabditis elegans	0.845	0.389	0.440	1.3e-20
ZFIN|ZDB-GENE-070112-282	174	zgc:153176 "zgc:153176" [Danio	0.75	0.586	0.453	4.1e-17
UNIPROTKB|Q2HJI2	184	NDUFAF3 "NADH dehydrogenase [u	0.75	0.554	0.435	3.7e-16
RGD|708545	185	Ndufaf3 "NADH dehydrogenase (u	0.757	0.556	0.383	7.7e-16
UNIPROTKB|Q9BU61	184	NDUFAF3 "NADH dehydrogenase [u	0.757	0.559	0.411	1.3e-15
UNIPROTKB|F1SKI6	185	NDUFAF3 "Uncharacterized prote	0.75	0.551	0.425	1.3e-15
MGI|MGI:1913956	185	Ndufaf3 "NADH dehydrogenase (u	0.742	0.545	0.431	1.3e-15
TAIR|locus:2101437	170	AT3G60150 "AT3G60150" [Arabido	0.669	0.535	0.333	1.6e-08
TAIR|locus:3436179	170	AT2G44525 "AT2G44525" [Arabido	0.647	0.517	0.333	7.8e-07

FB|FBgn0034919 CG5569 [Drosophila melanogaster (taxid:7227)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 60/132 (45%), Positives = 91/132 (68%)

Query:     1 FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKF 60
             +GFRL+N+ V++GP++VF + V SWN+    DIN +SLSLF  LEPK+DVLIIG+GD   
Sbjct:    65 YGFRLNNDMVLIGPISVFPRSVLSWNVNSFEDINEDSLSLFPTLEPKIDVLIIGIGDQAP 124

Query:    61 NHTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEEDIQA 119
                    +I  ++K+  NVE+L TE+A ATFNF+ +E R+   AL+PP+ +S+ E DI  
Sbjct:   125 PPALSKRIIEFMKKYKINVEILRTEQACATFNFLNAENRMVACALIPPLHLSYNENDILQ 184

Query:   120 TKHQNRDVYKLD 131
              K + +++Y+ +
Sbjct:   185 AKLRKKELYETE 196

GO:0022008 "neurogenesis" evidence=IMP

WB|WBGene00011123 nuaf-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 52/118 (44%), Positives = 77/118 (65%)

Query:     1 FGFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKF 60
             +GFRL + + + GP+A+F K   SW +    DI   SL+LF  LEPK+D+L++G+GD K 
Sbjct:   103 YGFRLLDGTFLYGPIALFPKTALSWRVPTPEDITPRSLALFAALEPKIDILVLGVGDKK- 161

Query:    61 NHTKL-IPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVRISFTEED 116
             N  K+   V   +R+H   +E++ TE AIATFNF+ +EGR  GAAL PP  +  T+++
Sbjct:   162 NIDKVRASVAPFLREHKIGLEIMDTEDAIATFNFLNAEGRYVGAALYPPDDMVVTDKE 219

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-070112-282 zgc:153176 "zgc:153176" [Danio rerio (taxid:7955)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 49/108 (45%), Positives = 68/108 (62%)

Query:     2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
             GF ++ N+V  GP AV    +  WN+   SDI++ESLSLF  LEP+++VL++G G     
Sbjct:    66 GFNINGNTVF-GPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGARTER 124

Query:    62 -HTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
              H +   V+ E++K    VEV  T  A ATFNF+ SE R+A AAL+PP
Sbjct:   125 LHAE---VLEELKKRGIAVEVQDTPNACATFNFLSSEKRLAAAALIPP 169

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q2HJI2 NDUFAF3 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3" [Bos taurus (taxid:9913)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 47/108 (43%), Positives = 65/108 (60%)

Query:     2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
             GF ++ N V  GP A+  + V  WN+    DI  ES SLF  LEP+++++++G GD    
Sbjct:    67 GFVVNGNRVF-GPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGD---R 122

Query:    62 HTKLIP-VINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
               +L P V+  +R+    VEV  T  A ATFNF+  EGRV GAAL+PP
Sbjct:   123 TERLQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPP 170

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

RGD|708545 Ndufaf3 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 3" [Rattus norvegicus (taxid:10116)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 41/107 (38%), Positives = 65/107 (60%)

Query:     2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
             GF ++ N V  GP A+  + V  WN+    DI  ES S+F  LEP+++++++G G+    
Sbjct:    68 GFTINGNRVF-GPCALLPQTVVQWNVGSHQDITEESFSIFWMLEPRIEIVVVGTGNKTER 126

Query:    62 -HTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
              H++++  + +  +   VE+  T  A ATFNF+  EGRV GAAL+PP
Sbjct:   127 LHSQVLQAMRQ--RGIAVEIQDTPNACATFNFLCHEGRVTGAALIPP 171

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA;ISO

UNIPROTKB|Q9BU61 NDUFAF3 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 44/107 (41%), Positives = 64/107 (59%)

Query:     2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
             GF ++ N V+ GP A+    V  WN+    DI  +S SLF  LEP+++++++G GD +  
Sbjct:    67 GFMINGNRVL-GPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGD-RTE 124

Query:    62 HTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
               +   V+  +R+    VEV  T  A ATFNF+  EGRV GAAL+PP
Sbjct:   125 RLQS-QVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPP 170

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1SKI6 NDUFAF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 46/108 (42%), Positives = 64/108 (59%)

Query:     2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
             GF ++ N V+ GP A+    V  WN+    DI   S SLF  LEP+++++++G GD    
Sbjct:    67 GFVVNGNRVL-GPCALLPHSVVQWNVGSHQDITEGSFSLFWMLEPRIEIVVVGTGD---R 122

Query:    62 HTKLIP-VINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
               +L P V+  +R+    VEV  T  A ATFNF+  EGRV GAAL+PP
Sbjct:   123 TERLQPQVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPP 170

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1913956 Ndufaf3 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3" [Mus musculus (taxid:10090)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 47/109 (43%), Positives = 64/109 (58%)

Query:     2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
             GF +  N V  GP  +  + V  WN+    DI  ES SLF  LEP+++++++G G    N
Sbjct:    68 GFTICGNRVF-GPCVLLPQTVVQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTG----N 122

Query:    62 HT-KLIP-VINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
              T +L P V+  +R+    VEV  T  A ATFNF+  EGRV GAAL+PP
Sbjct:   123 KTERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPP 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

TAIR|locus:2101437 AT3G60150 "AT3G60150" [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 32/96 (33%), Positives = 52/96 (54%)

Query:    13 GPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEV 72
             G L      + SW+    SDI  +SLS+F  + P  ++LI+G G  ++NH  L P + + 
Sbjct:    73 GSLLCVGNLLMSWSPRYFSDITTDSLSIFQTVRPIPELLIVGCG--RYNHP-LNPQVRQF 129

Query:    73 RKHCNV--EVLPTERAIATFNFMVSEGRVAGAALVP 106
              K   +  E + +  A +T+N +  EGR+  AAL+P
Sbjct:   130 VKSIGMKLETVDSRNAASTYNILNEEGRIVAAALLP 165

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:3436179 AT2G44525 "AT2G44525" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 33/99 (33%), Positives = 51/99 (51%)

Query:    13 GPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEV 72
             G L      + SW+    S+I  +SLS+F  + P  ++LI+G G  +  H    PV  EV
Sbjct:    73 GSLLCVGNLLMSWSPRKFSEITTDSLSIFQTVRPIPELLIVGCG--RDIH----PVTPEV 126

Query:    73 RKHCN-----VEVLPTERAIATFNFMVSEGRVAGAALVP 106
             R+        +E + +  A +T+N +  EGRV  AAL+P
Sbjct:   127 RQFVKSLGMKLETVDSRNAASTYNILNEEGRVVAAALLP 165

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2HJI2	NDUF3_BOVIN	No assigned EC number	0.4017	0.8235	0.6086	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	136
cd05125	114	cd05125, Mth938_2P1-like, Mth938_2P1-like domain	5e-32
pfam04430	109	pfam04430, DUF498, Protein of unknown function (DU	3e-21
cd00248	109	cd00248, Mth938-like, Mth938-like domain	1e-15
COG3737	127	COG3737, COG3737, Uncharacterized conserved protei	3e-09
cd05560	109	cd05560, Xcc1710_like, Xcc1710_like family, specif	7e-05

>gnl|CDD|240161 cd05125, Mth938_2P1-like, Mth938_2P1-like domain

 Score =  109 bits (274), Expect = 5e-32
 Identities = 51/108 (47%), Positives = 64/108 (59%), Gaps = 6/108 (5%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
           GFRL+NN V+ G  A+  K VFSWN+    DI  ESLSLF  LEP+ ++L+IG G     
Sbjct: 10  GFRLNNNKVI-GSGAILPKEVFSWNVSSFEDITEESLSLFELLEPRPEILVIGTGR---K 65

Query: 62  HTKLIP-VINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
              L P +    +K    VEV+ T  A ATFNF+  EGR   AAL+PP
Sbjct: 66  SRPLSPELRKYFKKLGIAVEVVDTRNACATFNFLAEEGRRVAAALIPP 113

This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available. Length = 114

>gnl|CDD|218085 pfam04430, DUF498, Protein of unknown function (DUF498/DUF598)

 Score = 81.5 bits (202), Expect = 3e-21
 Identities = 38/105 (36%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 2   GFRLSNNSVVVGPLAVF-NKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLG-DFK 59
           GFR+ N     G L V  +  V+ W++    D++ E L+L L L P  +VLIIG G   +
Sbjct: 8   GFRI-NGVRYEGSLLVLPDGIVWDWDVGSFEDLSPEDLALLLALAPDPEVLIIGTGARLR 66

Query: 60  FNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAAL 104
           F   +L   + +      VEV+ T  A  T+N + SEGR   AAL
Sbjct: 67  FLPPELREALRK--LGIGVEVMDTGAACRTYNVLASEGRRVAAAL 109

This is a large family of uncharacterized proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid. Length = 109

>gnl|CDD|238152 cd00248, Mth938-like, Mth938-like domain

 Score = 67.3 bits (165), Expect = 1e-15
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLG-DFKF 60
           GFR+    V  GPL V    V  W+    SD++ E+L   L  + + D+L+IG G +  F
Sbjct: 9   GFRI-AGQVYRGPLLVLPDGVVPWDGTSLSDLDPEALLPLLAED-RPDILLIGTGAEIAF 66

Query: 61  NHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALV 105
               L   +        VEV+ T  A  T+N ++SEGR   AAL+
Sbjct: 67  LPRALRAALRAAGI--GVEVMSTGAACRTYNVLLSEGRRVAAALI 109

The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined. Length = 109

>gnl|CDD|226260 COG3737, COG3737, Uncharacterized conserved protein [Function unknown]

 Score = 51.3 bits (123), Expect = 3e-09
 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
           GFR   +    G L V    V  W +   SD+  E     L   P +++L+IG G     
Sbjct: 25  GFRF-ADMSHRGSLLVLPDGVCDWEVATLSDLTPEDFERVLAEAPDVEILLIGTGA---R 80

Query: 62  HTKLIPVINEV--RKHCNVEVLPTERAIATFNFMVSEGRVAGAALVP 106
                P +         +VE + T  A+ T+N ++SEGR   AAL+ 
Sbjct: 81  LRFPPPKLRAALKAAGISVEPMSTGAAVRTYNVLLSEGRRVAAALIA 127

Length = 127

>gnl|CDD|240187 cd05560, Xcc1710_like, Xcc1710_like family, specific to proteobacteria

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 9/98 (9%)

Query: 9   SVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGD-FKFNHTKLIP 67
           S++V P    ++ +  W +    D+        L L+P  +V+++G G+  +F    L+ 
Sbjct: 20  SLIVTP----DELITDWPVARFEDLTAAHFEALLALQP--EVILLGTGERQRFPPPALLA 73

Query: 68  VINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALV 105
            +  + +   VEV+ T+ A  T+N ++ EGR   AAL+
Sbjct: 74  PL--LARGIGVEVMDTQAACRTYNILMGEGRRVVAALL 109

Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown. Length = 109

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
2fvt_A	135	Conserved hypothetical protein; MTH938-like fold,	4e-24
2fi9_A	128	Outer membrane protein; bartonella hense protein s	9e-22
2gm2_A	132	Conserved hypothetical protein; MTH938-like fold,	1e-20
3cpk_A	150	Uncharacterized protein Q7W7N7_borpa; BPP2477, BER	3e-16
2ab1_A	122	Hypothetical protein; HS.95870, DUF498, structural	2e-14
2cyj_A	118	Hypothetical protein PH1505; conserved hypothetica	3e-06
1ihn_A	113	Hypothetical protein MTH938; methanobacterium ther	4e-06

>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1 Length = 135

 Score = 89.6 bits (222), Expect = 4e-24
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGD-FKF 60
           GF         G L      V+ W++     I+  SL         +D LI+G G     
Sbjct: 23  GFYF-AGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWI 81

Query: 61  NHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVP-PVRISFTE 114
              +L   +     +  ++ + T  AI T+N M+ E R   AAL+  P+      
Sbjct: 82  APRQLREALRG--VNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAVPLEHHHHH 134

>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1 Length = 128

 Score = 83.0 bits (205), Expect = 9e-22
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGD-FKF 60
           GFR   +    G +      ++  ++        E +S  L    +++VL+IG G     
Sbjct: 25  GFRF-ADMSHRGSIICIPSGIYGIDM-TGPVPTQEDISRVLEESDQIEVLLIGTGVELLR 82

Query: 61  NHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
              +L  ++ E  K  + + + T  A+ TFN +++E R   A L   
Sbjct: 83  LPEELRVLLWE--KRISSDTMSTGAAVRTFNVLLAEDRAVAALLFAV 127

>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV} Length = 132

 Score = 80.2 bits (198), Expect = 1e-20
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 2   GFRLSNNSVVVGPLAVF-NKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGD-FK 59
             ++ N  ++     +  ++ V  W +     +    +   L L P   V+++G G+  +
Sbjct: 21  HAKV-NEQILQQSFILMPDELVEHWPVPSLGQLQPAHMDAVLALNP--AVILLGTGERQQ 77

Query: 60  FNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
           F  T ++       +   +E +    A  T+N + SEGR    A++  
Sbjct: 78  FPSTDVLAACLT--RGIGLEAMTNAAAARTYNVLASEGRRVALAMIVG 123

>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A Length = 150

 Score = 69.8 bits (170), Expect = 3e-16
 Identities = 25/130 (19%), Positives = 42/130 (32%), Gaps = 27/130 (20%)

Query: 2   GFRLSNNSVVVGPLAVF-NKCVFSWNILDDSDINMESLSLFLHLEP-------------- 46
              + N       +A      V SW +   +DI    L     L                
Sbjct: 21  YIEV-NQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLDEPEA 79

Query: 47  --------KLDVLIIGLGD-FKFNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEG 97
                     +VL++G G        + +  +        VE + T+ A  T+N +++EG
Sbjct: 80  GAGARPANAPEVLLVGTGRRQHLLGPEQVRPLLA--MGVGVEAMDTQAAARTYNILMAEG 137

Query: 98  RVAGAALVPP 107
           R    AL+P 
Sbjct: 138 RRVVVALLPD 147

>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A Length = 122

 Score = 64.2 bits (156), Expect = 2e-14
 Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 7/108 (6%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILD---DSDINMESLSLFLHLEPKLDVLIIGLGDF 58
             ++  ++       V+     +W+  +   +    ++   +   +E  +  L+IG G  
Sbjct: 13  QMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVEKGVQTLVIGRGMS 72

Query: 59  KFNHT--KLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAAL 104
           +        +  + +     +V VL TE+A+  +N +V++G   G   
Sbjct: 73  EALKVPSSTVEYLKK--HGIDVRVLQTEQAVKEYNALVAQGVRVGGVF 118

>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii} SCOP: c.103.1.1 Length = 118

 Score = 42.3 bits (99), Expect = 3e-06
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 44  LEPKLDVLIIGLGDFKFNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGA 102
           L    DVL++G G +      L+P   ++ +   V   PT+ A+     +  + R+   
Sbjct: 57  LVEDFDVLLVGTGIYGM--LSLLPESKKLVEDKEVIEKPTKEALKLLEELWGKKRILAI 113

>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1 Length = 113

 Score = 42.3 bits (99), Expect = 4e-06
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 44  LEPKLDVLIIGLGDFKFNHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAA 103
           LE K + +IIG G     H  L     E     +  VLPT  AI  +N   S GR   A 
Sbjct: 58  LEEKPESIIIGSG----VHGAL-----ETGFRSDATVLPTCEAIKRYNEERSAGRRVAAI 108

Query: 104 L 104
           +
Sbjct: 109 I 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
2fvt_A	135	Conserved hypothetical protein; MTH938-like fold,	100.0
2fi9_A	128	Outer membrane protein; bartonella hense protein s	100.0
2gm2_A	132	Conserved hypothetical protein; MTH938-like fold,	100.0
3cpk_A	150	Uncharacterized protein Q7W7N7_borpa; BPP2477, BER	100.0
2ab1_A	122	Hypothetical protein; HS.95870, DUF498, structural	100.0
2cyj_A	118	Hypothetical protein PH1505; conserved hypothetica	99.97
1ihn_A	113	Hypothetical protein MTH938; methanobacterium ther	99.96

>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1

Probab=100.00  E-value=4.3e-40  Score=243.55  Aligned_cols=106  Identities=25%  Similarity=0.357  Sum_probs=102.3

Q ss_pred             cEEEeCCcEEecCEEEeCCceeeccCCCCCCCChhHHHHHHhhCCCccEEEEecCCCCcCCCCCHHHHHHHHhh-cccee
Q psy14701          2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKH-CNVEV   80 (136)
Q Consensus         2 gf~i~ng~~~~gsviv~p~~v~~W~~~~~~dl~~e~l~~l~~~~P~~EvlIiGTG~~~~~~~l~~~l~~~l~~~-I~vEv   80 (136)
                      ||+| ||++|.||++++|++++.|+++++++|++++|+.++.+.|+||+||||||+++  .+++|+++++|+++ |++|+
T Consensus        23 ~f~i-ng~~~~gsilv~p~~~~~W~~~~~~~l~~e~l~~l~~~~p~pevliiGTG~~~--~~l~p~l~~~l~~~GI~vE~   99 (135)
T 2fvt_A           23 GFYF-AGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADV--WIAPRQLREALRGVNVVLDT   99 (135)
T ss_dssp             EEEC-SSSEECSEEEECSSCEEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSC--CCCCHHHHHHHHTTTCEEEE
T ss_pred             EEEE-CCEEEEeCEEEeCCCccccCCCCcccCCHHHHHHHHhcCCCCCEEEEcCCCCC--CcCCHHHHHHHHHcCCEEEE
Confidence            7999 79999999999999999999999999999999999999999999999999999  56999999999999 99999


Q ss_pred             cChHHHHHHHHHhhhcchhhhhhcccccCC
Q psy14701         81 LPTERAIATFNFMVSEGRVAGAALVPPVRI  110 (136)
Q Consensus        81 M~T~aAcrTyN~L~sEgR~VaAALip~~~~  110 (136)
                      |+|++||||||+|++|||+|||||||+++-
T Consensus       100 M~T~aAcrTyNiL~~EgR~VaAaLi~~~~~  129 (135)
T 2fvt_A          100 MQTGPAIRTYNIMIGERRRVAAALIAVPLE  129 (135)
T ss_dssp             ECHHHHHHHHHHHHHHTSCEEEEEECCCTT
T ss_pred             eCHHHHHHHHHHHHhCCCcEEEEEcCCCch
Confidence            999999999999999999999999998763

>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1

Probab=100.00  E-value=6.6e-39  Score=234.86  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=98.6

Q ss_pred             cEEEeCCcEEecCEEEeCCceeeccCCCCCCCChhHHHHHHhhCCCccEEEEecCCCCcCCCCCHHHHHHHHhh-cccee
Q psy14701          2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKH-CNVEV   80 (136)
Q Consensus         2 gf~i~ng~~~~gsviv~p~~v~~W~~~~~~dl~~e~l~~l~~~~P~~EvlIiGTG~~~~~~~l~~~l~~~l~~~-I~vEv   80 (136)
                      ||+| ||++|.||++++|+++..|++++ +++++++|+.++.+.|+||+||||||.+.  +++||+++++|+++ |++|+
T Consensus        25 ~f~i-~g~~~~g~i~v~p~~~~~W~~~~-~~l~~~~l~~l~~~~p~pevliiGtG~~~--~~l~p~~~~~l~~~GI~vE~  100 (128)
T 2fi9_A           25 GFRF-ADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVEL--LRLPEELRVLLWEKRISSDT  100 (128)
T ss_dssp             EEEE-TTEEEESEEEEETTEEEEECCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSC--CCCCHHHHHHHHHTTCEEEE
T ss_pred             EEEE-CCEEEEeCEEEeCCCeeccCCCc-CCCCHHHHHHHHhcCCCCCEEEECCCCCC--CCCCHHHHHHHHHcCCEEEE
Confidence            7999 79999999999999999999999 99999999999999988999999999997  67999999999999 99999


Q ss_pred             cChHHHHHHHHHhhhcchhhhhhcccc
Q psy14701         81 LPTERAIATFNFMVSEGRVAGAALVPP  107 (136)
Q Consensus        81 M~T~aAcrTyN~L~sEgR~VaAALip~  107 (136)
                      |+|++||||||+|++|||+|||||||.
T Consensus       101 m~T~aAcrtyNiL~~EgR~VaaaLi~~  127 (128)
T 2fi9_A          101 MSTGAAVRTFNVLLAEDRAVAALLFAV  127 (128)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             eCHHHHHHHHHHHHhCCCcEEEEEEec
Confidence            999999999999999999999999984

>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}

Probab=100.00  E-value=1.3e-38  Score=234.60  Aligned_cols=104  Identities=17%  Similarity=0.309  Sum_probs=99.4

Q ss_pred             cEEEeCCcEEecCEEEeCCce-eeccCCCCCCCChhHHHHHHhhCCCccEEEEecCCCCcCCCCCHHHHHHHHhh-ccce
Q psy14701          2 GFRLSNNSVVVGPLAVFNKCV-FSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKH-CNVE   79 (136)
Q Consensus         2 gf~i~ng~~~~gsviv~p~~v-~~W~~~~~~dl~~e~l~~l~~~~P~~EvlIiGTG~~~~~~~l~~~l~~~l~~~-I~vE   79 (136)
                      ||+| ||++|.||++++|+++ ..|+++++++|++++|+.++...|  |+||||||+++  ++++|+++++|+++ |++|
T Consensus        21 ~f~i-~g~~~~g~ilv~p~~~v~~W~~~~~~~l~~e~l~~ll~~~p--evliiGTG~~~--~~l~p~~~~~l~~~GI~vE   95 (132)
T 2gm2_A           21 HAKV-NEQILQQSFILMPDELVEHWPVPSLGQLQPAHMDAVLALNP--AVILLGTGERQ--QFPSTDVLAACLTRGIGLE   95 (132)
T ss_dssp             CEEE-TTEEECSEEEECSSCEECCCCCSSGGGCCTTTSHHHHHHCC--SEEEEECTTSC--CCCCHHHHHHHHHHTCEEE
T ss_pred             EEEE-CCEEEEeCEEEeCCCceeecCCCCcccCCHHHHHHHHhcCC--CEEEECCCCCC--CcCCHHHHHHHHHcCCEEE
Confidence            7999 7999999999999997 899999999999999999999876  99999999999  56999999999999 9999


Q ss_pred             ecChHHHHHHHHHhhhcchhhhhhcccccCC
Q psy14701         80 VLPTERAIATFNFMVSEGRVAGAALVPPVRI  110 (136)
Q Consensus        80 vM~T~aAcrTyN~L~sEgR~VaAALip~~~~  110 (136)
                      +|+|++||||||+|++|||+|||||+|+++-
T Consensus        96 ~m~T~aAcrTyNiL~~EgR~VaAaLi~~~~~  126 (132)
T 2gm2_A           96 AMTNAAAARTYNVLASEGRRVALAMIVGGLE  126 (132)
T ss_dssp             EECHHHHHHHHHHHHHHTCCEEEEEECCCCC
T ss_pred             EeCHHHHHHHHHHHHhCCCcEEEEEccCChh
Confidence            9999999999999999999999999998764

>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A

Probab=100.00  E-value=3.1e-37  Score=231.82  Aligned_cols=105  Identities=24%  Similarity=0.293  Sum_probs=97.7

Q ss_pred             cEEEeCCcEEecCEEEeCCce-eeccCCCCCCCChhHHHHHHhhCC----------------------CccEEEEecCCC
Q psy14701          2 GFRLSNNSVVVGPLAVFNKCV-FSWNILDDSDINMESLSLFLHLEP----------------------KLDVLIIGLGDF   58 (136)
Q Consensus         2 gf~i~ng~~~~gsviv~p~~v-~~W~~~~~~dl~~e~l~~l~~~~P----------------------~~EvlIiGTG~~   58 (136)
                      ||+| ||++|.||++++|++. ..|+++++++|++++|+.++.+.|                      +||+||||||.+
T Consensus        21 ~~~i-ng~~~~gsv~v~p~g~v~~W~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~p~~~pEvliiGTG~~   99 (150)
T 3cpk_A           21 YIEV-NQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLDEPEAGAGARPANAPEVLLVGTGRR   99 (150)
T ss_dssp             EEEE-TTEEECSCEEECSSSCCEECCCSSGGGCCHHHHHHHHTCC-----------------------CCSEEEEECTTS
T ss_pred             EEEE-CCEEEEcCEEEecCCceeecCCCChhhCCHHHHHHHHhcccccccchhhccccccccccccCCCCCEEEEcCCCC
Confidence            6899 7999999999999886 899999999999999999999855                      789999999999


Q ss_pred             CcCCCCCHHHHHHHHhh-ccceecChHHHHHHHHHhhhcchhhhhhcccccC
Q psy14701         59 KFNHTKLIPVINEVRKH-CNVEVLPTERAIATFNFMVSEGRVAGAALVPPVR  109 (136)
Q Consensus        59 ~~~~~l~~~l~~~l~~~-I~vEvM~T~aAcrTyN~L~sEgR~VaAALip~~~  109 (136)
                      +  .+++++++++|+++ |++|+|+|++||||||+|++|||+|+|||+|++.
T Consensus       100 ~--~~l~p~~~~~L~~~GIgvE~M~T~aA~rTyNiL~~EgRrVaaaLi~~~~  149 (150)
T 3cpk_A          100 Q--HLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDGD  149 (150)
T ss_dssp             C--CCCCHHHHHHHHTTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred             C--CCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence            9  56999999999999 9999999999999999999999999999999764

>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A

Probab=100.00  E-value=1.2e-35  Score=216.18  Aligned_cols=101  Identities=19%  Similarity=0.298  Sum_probs=94.0

Q ss_pred             cEEEeCCcEEec-CEEEeCCceeecc-----CCCCCCCChhHHHHHHhhCCCccEEEEecCCCCcCCCCCHHHHHHHHhh
Q psy14701          2 GFRLSNNSVVVG-PLAVFNKCVFSWN-----ILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKH   75 (136)
Q Consensus         2 gf~i~ng~~~~g-sviv~p~~v~~W~-----~~~~~dl~~e~l~~l~~~~P~~EvlIiGTG~~~~~~~l~~~l~~~l~~~   75 (136)
                      ||+| ||++|.| |++++|+++.+|+     +.+++++++++|+.++..  +||+||||||.++.| ++||+++++|+++
T Consensus        13 ~~~i-ng~~~~~~siiv~p~~~~~w~w~~~g~~~~~~l~~~~l~~ll~~--~~evliiGtG~~~~~-~~~~~~~~~l~~~   88 (122)
T 2ab1_A           13 QMKV-KGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVEK--GVQTLVIGRGMSEAL-KVPSSTVEYLKKH   88 (122)
T ss_dssp             EEEE-TTCSCEESEEEEETTEEEEECHHHHTCCSSSCCCHHHHHHHHTT--CCSEEEEEECSSCCS-CCCHHHHHHHHHT
T ss_pred             EEEE-CCEEEeCCCEEEECCccccCcccccCcCChhHCCHHHHHHHhhC--CCCEEEECCCCCCcc-CCCHHHHHHHHHc
Confidence            6899 7999999 9999999999998     899999999999999664  459999999999932 4999999999999


Q ss_pred             -ccceecChHHHHHHHHHhhhcchhhhhhccc
Q psy14701         76 -CNVEVLPTERAIATFNFMVSEGRVAGAALVP  106 (136)
Q Consensus        76 -I~vEvM~T~aAcrTyN~L~sEgR~VaAALip  106 (136)
                       |++|+|+|++||||||+|++|||+|||||+.
T Consensus        89 gI~ve~m~T~~A~rtyN~L~~EgR~VaAal~~  120 (122)
T 2ab1_A           89 GIDVRVLQTEQAVKEYNALVAQGVRVGGVFHS  120 (122)
T ss_dssp             TCEEEEECHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCEEEEeCHHHHHHHHHHHHhCCCcEEEEEee
Confidence             9999999999999999999999999999974

>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii} SCOP: c.103.1.1

Probab=99.97  E-value=3e-33  Score=202.63  Aligned_cols=98  Identities=16%  Similarity=0.169  Sum_probs=89.1

Q ss_pred             cEEEeCCcEEecCEEEeCCce---eeccCCC-----CCCCChhHHHHHHhhCCCccEEEEecCCCCcCCCCCHHHHHHHH
Q psy14701          2 GFRLSNNSVVVGPLAVFNKCV---FSWNILD-----DSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVR   73 (136)
Q Consensus         2 gf~i~ng~~~~gsviv~p~~v---~~W~~~~-----~~dl~~e~l~~l~~~~P~~EvlIiGTG~~~~~~~l~~~l~~~l~   73 (136)
                      +|+| ||++|.||++++|+++   ..|+...     +++|++++|+.++...|  |+||||||.++. .++|+++++.|+
T Consensus        10 ~~~i-~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~ll~~~~--evlliGTG~~~~-~~~~~~~~~~l~   85 (118)
T 2cyj_A           10 LVKI-DGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEKYLVEDF--DVLLVGTGIYGM-LSLLPESKKLVE   85 (118)
T ss_dssp             EEEE-TTEEESSCEEECTTSCEEECCTHHHHHHHSSTTEECHHHHHTTTTSCC--SEEEEEECTTCC-CEECHHHHHHTT
T ss_pred             EEEE-CCEEEeeCEEEeCCCcccccccCccccccCCcccCCHHHHHHHHhcCC--CEEEECCCCCcc-ccCCHHHHHHHH
Confidence            5899 7999999999999987   6666544     78899999999999986  999999999974 469999999999


Q ss_pred             hhccceecChHHHHHHHHHhhhcchhhhhhcc
Q psy14701         74 KHCNVEVLPTERAIATFNFMVSEGRVAGAALV  105 (136)
Q Consensus        74 ~~I~vEvM~T~aAcrTyN~L~sEgR~VaAALi  105 (136)
                      ++ ++|+|+|++||||||+|+ |||+|+|||=
T Consensus        86 ~~-~ve~M~T~aAcrTYNiL~-EgRrV~aalh  115 (118)
T 2cyj_A           86 DK-EVIEKPTKEALKLLEELW-GKKRILAIIH  115 (118)
T ss_dssp             TS-EEEEECHHHHHHHHHHHB-TTBCEEEEEE
T ss_pred             HC-CcEEeCHHHHHHHHHHHh-cCCeEEEEEe
Confidence            99 999999999999999999 9999999983

>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1

Probab=99.96  E-value=2.3e-31  Score=191.46  Aligned_cols=92  Identities=23%  Similarity=0.180  Sum_probs=79.8

Q ss_pred             cEEEeCCcEEecCEEEeCCce---eeccCCC-----CCCCChhHHHHHHhhCCCccEEEEecCCCCcCCCCCHHHHHHHH
Q psy14701          2 GFRLSNNSVVVGPLAVFNKCV---FSWNILD-----DSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVR   73 (136)
Q Consensus         2 gf~i~ng~~~~gsviv~p~~v---~~W~~~~-----~~dl~~e~l~~l~~~~P~~EvlIiGTG~~~~~~~l~~~l~~~l~   73 (136)
                      +|+| ||++|.||++++|+++   ..|+...     .++|++++|+.++...|  |+||||||.++.+ +++++++    
T Consensus        11 ~~~i-~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~ll~~~~--evlliGTG~~~~~-~~~~~~~----   82 (113)
T 1ihn_A           11 SVTY-RGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEELLEEKP--ESIIIGSGVHGAL-ETGFRSD----   82 (113)
T ss_dssp             EEEE-TTEEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHHHHHTTCC--SEEEEECCTTCCC-EESSCCS----
T ss_pred             EEEE-CCEEEeeCEEEeCCCcccccccCccccccCccccCCHHHHHHHHhcCC--CEEEECCCCCccc-cCChhhE----
Confidence            5899 7999999999999987   5565543     68899999999999987  9999999999743 3455553    


Q ss_pred             hhccceecChHHHHHHHHHhhhcchhhhhhcc
Q psy14701         74 KHCNVEVLPTERAIATFNFMVSEGRVAGAALV  105 (136)
Q Consensus        74 ~~I~vEvM~T~aAcrTyN~L~sEgR~VaAALi  105 (136)
                          +|+|+|++||||||+|++|||+|+|||=
T Consensus        83 ----ve~M~T~aAcrTYNiL~~EgRrV~aalh  110 (113)
T 1ihn_A           83 ----ATVLPTCEAIKRYNEERSAGRRVAAIIH  110 (113)
T ss_dssp             ----CEEECHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             ----EEEcChHHHHHHHHHHHhCCCeEEEEEe
Confidence                9999999999999999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d2fvta1	127	c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {	8e-21
d2fi9a1	118	c.103.1.1 (A:11-128) Hypothetical outer membrane p	2e-17
d2q4qa1	121	c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C	6e-15
d2cyja1	118	c.103.1.1 (A:1-118) Hypothetical protein PH1505 {P	2e-12
d1ihna_	113	c.103.1.1 (A:) Hypothetical protein MT938 (MTH938)	2e-08

>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 127

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein RPA2829
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score = 79.5 bits (196), Expect = 8e-21
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLG-DFKF 60
           GF  +      G L      V+ W++     I+  SL         +D LI+G G D   
Sbjct: 23  GFYFAGM-SHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWI 81

Query: 61  NHTKLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALVPP 107
              +L   +     +  ++ + T  AI T+N M+ E R   AAL+  
Sbjct: 82  APRQLREALRG--VNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAV 126

>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]} Length = 118

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical outer membrane protein BH05650
species: Bartonella henselae [TaxId: 38323]

 Score = 70.6 bits (173), Expect = 2e-17
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 13/111 (11%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFN 61
           GFR   +    G +      ++  ++        E +S  L    +++VL+IG G     
Sbjct: 15  GFRF-ADMSHRGSIICIPSGIYGIDMTGP-VPTQEDISRVLEESDQIEVLLIGTGV---- 68

Query: 62  HTKLIPVINEVRKHCN-----VEVLPTERAIATFNFMVSEGRVAGAALVPP 107
             +L+ +  E+R          + + T  A+ TFN +++E R   A L   
Sbjct: 69  --ELLRLPEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFAV 117

>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PTD015 (C11orf67)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 6e-15
 Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 13/111 (11%)

Query: 2   GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLS---LFLHLEPKLDVLIIGLGDF 58
             ++  ++       V+     +W+  +    +   +    +   +E  +  L+IG G  
Sbjct: 12  QMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVEKGVQTLVIGRGM- 70

Query: 59  KFNHTKLIPVINEVRKHCN-----VEVLPTERAIATFNFMVSEGRVAGAAL 104
               ++ + V +   ++       V VL TE+A+  +N +V++G   G   
Sbjct: 71  ----SEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVF 117

>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PH1505
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 57.6 bits (139), Expect = 2e-12
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 7   NNSVVVGP---LAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHT 63
           ++ +V+ P   +    K +          ++ E L  +L      DVL++G G +     
Sbjct: 19  DHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEKYL--VEDFDVLLVGTGIY--GML 74

Query: 64  KLIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAALV 105
            L+P   ++ +   V   PT+ A+     +  + R+     V
Sbjct: 75  SLLPESKKLVEDKEVIEKPTKEALKLLEELWGKKRILAIIHV 116

>d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 113

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein MT938 (MTH938)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 46.9 bits (111), Expect = 2e-08
 Identities = 24/100 (24%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 7   NNSVVVGPLAVF--NKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTK 64
            + +VV         +   S      S   M    L   LE K + +IIG G        
Sbjct: 20  RSDIVVHVDGSVTPRRKEISRRKYGTSH-VMAEEELEELLEEKPESIIIGSGV-----HG 73

Query: 65  LIPVINEVRKHCNVEVLPTERAIATFNFMVSEGRVAGAAL 104
            +          +  VLPT  AI  +N   S GR   A +
Sbjct: 74  ALET----GFRSDATVLPTCEAIKRYNEERSAGRRVAAII 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d2fvta1	127	Hypothetical protein RPA2829 {Rhodopseudomonas pal	100.0
d2fi9a1	118	Hypothetical outer membrane protein BH05650 {Barto	100.0
d2q4qa1	121	Hypothetical protein PTD015 (C11orf67) {Human (Hom	99.97
d2cyja1	118	Hypothetical protein PH1505 {Pyrococcus horikoshii	99.96
d1ihna_	113	Hypothetical protein MT938 (MTH938) {Archaeon Meth	99.95

>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein RPA2829
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=100.00  E-value=4.5e-40  Score=238.92  Aligned_cols=104  Identities=25%  Similarity=0.379  Sum_probs=100.2

Q ss_pred             cEEEeCCcEEecCEEEeCCceeeccCCCCCCCChhHHHHHHhhCCCccEEEEecCCCCcCCCCCHHHHHHHHhh-cccee
Q psy14701          2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKH-CNVEV   80 (136)
Q Consensus         2 gf~i~ng~~~~gsviv~p~~v~~W~~~~~~dl~~e~l~~l~~~~P~~EvlIiGTG~~~~~~~l~~~l~~~l~~~-I~vEv   80 (136)
                      ||+| ||++|.||++++|++++.|++++.++++.++++.+..++|+||+||||||+++  .+++++++++|+++ |++|+
T Consensus        23 ~f~I-~g~~y~~siii~p~~~~~w~~~~~~~l~~~~l~~l~~l~~~peilliGtG~~~--~~~~~~~~~~l~~~gI~vE~   99 (127)
T d2fvta1          23 GFYF-AGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADV--WIAPRQLREALRGVNVVLDT   99 (127)
T ss_dssp             EEEC-SSSEECSEEEECSSCEEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSC--CCCCHHHHHHHHTTTCEEEE
T ss_pred             eEEE-CCEEEecCEEEECCceecCCCCCcccCCHHHHHHHHhcCCCCCEEEEecCCcc--CCCCHHHHHHHHHCCCEEEE
Confidence            5999 79999999999999999999999999999999999999999999999999998  56999999999999 99999


Q ss_pred             cChHHHHHHHHHhhhcchhhhhhccccc
Q psy14701         81 LPTERAIATFNFMVSEGRVAGAALVPPV  108 (136)
Q Consensus        81 M~T~aAcrTyN~L~sEgR~VaAALip~~  108 (136)
                      |+|++||||||+|++|||+|||||||++
T Consensus       100 M~T~aAcrTfNvL~~EgR~V~AaLip~p  127 (127)
T d2fvta1         100 MQTGPAIRTYNIMIGERRRVAAALIAVP  127 (127)
T ss_dssp             ECHHHHHHHHHHHHHHTSCEEEEEECCC
T ss_pred             eCcHHHHHHHHHHHhcCCceEEEEecCC
Confidence            9999999999999999999999999975

>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical outer membrane protein BH05650
species: Bartonella henselae [TaxId: 38323]

Probab=100.00  E-value=1.6e-38  Score=227.87  Aligned_cols=102  Identities=21%  Similarity=0.294  Sum_probs=96.2

Q ss_pred             cEEEeCCcEEecCEEEeCCceeeccCCCCCCCChhHHHHHHhhCCCccEEEEecCCCCcCCCCCHHHHHHHHhh-cccee
Q psy14701          2 GFRLSNNSVVVGPLAVFNKCVFSWNILDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKH-CNVEV   80 (136)
Q Consensus         2 gf~i~ng~~~~gsviv~p~~v~~W~~~~~~dl~~e~l~~l~~~~P~~EvlIiGTG~~~~~~~l~~~l~~~l~~~-I~vEv   80 (136)
                      ||+| ||++|.||++++|++++.|++.+ ++++.++++.++...|+||+||||||+++  .+++++++++|+++ |++|+
T Consensus        15 ~f~I-~g~~y~~siii~p~~i~~w~~~~-~~~~~~~~~~~~~~~~~peilliGtG~~~--~~~~~~~~~~l~~~gI~~Ev   90 (118)
T d2fi9a1          15 GFRF-ADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVEL--LRLPEELRVLLWEKRISSDT   90 (118)
T ss_dssp             EEEE-TTEEEESEEEEETTEEEEECCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSC--CCCCHHHHHHHHHTTCEEEE
T ss_pred             EEEE-CCEEEecCEEEccCcEEEccCCC-cccCHHHHHHHHhccCCCCEEEEecCccc--cCCCHHHHHHHHHcCCeEEE
Confidence            5999 79999999999999999998866 77899999999998888899999999987  67999999999999 99999


Q ss_pred             cChHHHHHHHHHhhhcchhhhhhcccc
Q psy14701         81 LPTERAIATFNFMVSEGRVAGAALVPP  107 (136)
Q Consensus        81 M~T~aAcrTyN~L~sEgR~VaAALip~  107 (136)
                      |+|++||||||+|++|||+|+|||||.
T Consensus        91 M~T~aAcrTfNvL~sEgR~VaAaLipi  117 (118)
T d2fi9a1          91 MSTGAAVRTFNVLLAEDRAVAALLFAV  117 (118)
T ss_dssp             ECHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             eCcHHHHHHHHHHHhcCccEEEEEEec
Confidence            999999999999999999999999985

>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PTD015 (C11orf67)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-32  Score=196.87  Aligned_cols=100  Identities=19%  Similarity=0.298  Sum_probs=90.4

Q ss_pred             cEEEeCCcEEe-cCEEEeCCceeeccC-----CCCCCCChhHHHHHHhhCCCccEEEEecCCCCcCCCCCHHHHHHHHhh
Q psy14701          2 GFRLSNNSVVV-GPLAVFNKCVFSWNI-----LDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVRKH   75 (136)
Q Consensus         2 gf~i~ng~~~~-gsviv~p~~v~~W~~-----~~~~dl~~e~l~~l~~~~P~~EvlIiGTG~~~~~~~l~~~l~~~l~~~   75 (136)
                      +|+| +|.+|. ++++++|+++.+|+.     .+.+.++++++..++..+|  |+||||||.++. .++|++++++|+++
T Consensus        12 ~i~i-~G~~~~~~di~v~P~g~~~w~~~~~g~~~~~~l~~~~l~~~l~~~p--eilliGtG~~~~-~~l~~~~~~~l~~~   87 (121)
T d2q4qa1          12 QMKV-KGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKEVVEKGV--QTLVIGRGMSEA-LKVPSSTVEYLKKH   87 (121)
T ss_dssp             EEEE-ETCSCCCSSEEEETTEEEECCGGGTTCCSSSCSCHHHHHHHHTTCC--SEEEEECCSSCC-SCCCHHHHHHHHTT
T ss_pred             eEEE-cCeeeecCCEEEecCCceecccccCCCCcccccCHHHHHHHhccCC--CEEEEcCCCCcc-cCCCHHHHHHHHHc
Confidence            6899 699997 699999999999874     4567899999999997766  999999999874 46899999999999


Q ss_pred             -ccceecChHHHHHHHHHhhhcchhhhhhcc
Q psy14701         76 -CNVEVLPTERAIATFNFMVSEGRVAGAALV  105 (136)
Q Consensus        76 -I~vEvM~T~aAcrTyN~L~sEgR~VaAALi  105 (136)
                       |++|+|+|++||||||+|++|||+|+|||-
T Consensus        88 gi~ve~m~T~~AcrtyNvL~~EgR~V~Aalh  118 (121)
T d2q4qa1          88 GIDVRVLQTEQAVKEYNALVAQGVRVGGVFH  118 (121)
T ss_dssp             TCEEEEECHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCceEEeCHHHHHHHHHHHHhCCCcEEEEEe
Confidence             999999999999999999999999999984

>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PH1505
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=9.8e-31  Score=187.14  Aligned_cols=98  Identities=15%  Similarity=0.203  Sum_probs=79.6

Q ss_pred             cEEEeCCcEEecCEEEeCCceeeccCC--------CCCCCChhHHHHHHhhCCCccEEEEecCCCCcCCCCCHHHHHHHH
Q psy14701          2 GFRLSNNSVVVGPLAVFNKCVFSWNIL--------DDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVR   73 (136)
Q Consensus         2 gf~i~ng~~~~gsviv~p~~v~~W~~~--------~~~dl~~e~l~~l~~~~P~~EvlIiGTG~~~~~~~l~~~l~~~l~   73 (136)
                      +|+| ||++|.+|++|+|+++..|+..        +.++++.++|+.++...|  |+||||||.++.+ ++++.+ +.+.
T Consensus        10 ~i~I-~g~~y~~siiV~P~g~i~~~~~~~s~~~~~t~~~l~~~dl~~~l~~~p--eilliGtG~~~~~-~~~~~~-~~~~   84 (118)
T d2cyja1          10 LVKI-DGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEKYLVEDF--DVLLVGTGIYGML-SLLPES-KKLV   84 (118)
T ss_dssp             EEEE-TTEEESSCEEECTTSCEEECCTHHHHHHHSSTTEECHHHHHTTTTSCC--SEEEEEECTTCCC-EECHHH-HHHT
T ss_pred             EEEE-CCEEEecCEEEcCCCccccccccccccccCCcccCCHHHHHHHhccCC--CEEEEecCCCccC-CChHHH-HHHH
Confidence            4788 7999999999999998877653        678899999998887655  9999999999842 344444 4443


Q ss_pred             hhccceecChHHHHHHHHHhhhcchhhhhhcc
Q psy14701         74 KHCNVEVLPTERAIATFNFMVSEGRVAGAALV  105 (136)
Q Consensus        74 ~~I~vEvM~T~aAcrTyN~L~sEgR~VaAALi  105 (136)
                      +.|++|+|+|++||||||+|++||| |+|||.
T Consensus        85 ~~i~ve~m~T~~AcrtyNvL~~e~R-v~A~lh  115 (118)
T d2cyja1          85 EDKEVIEKPTKEALKLLEELWGKKR-ILAIIH  115 (118)
T ss_dssp             TTSEEEEECHHHHHHHHHHHBTTBC-EEEEEE
T ss_pred             hCCCEEEEChHHHHHHHHHHhcCCc-eEEEEE
Confidence            3399999999999999999999976 666653

>d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein MT938 (MTH938)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.95  E-value=2.6e-29  Score=178.85  Aligned_cols=91  Identities=22%  Similarity=0.199  Sum_probs=79.1

Q ss_pred             cEEEeCCcEEecCEEEeCCceeeccC--------CCCCCCChhHHHHHHhhCCCccEEEEecCCCCcCCCCCHHHHHHHH
Q psy14701          2 GFRLSNNSVVVGPLAVFNKCVFSWNI--------LDDSDINMESLSLFLHLEPKLDVLIIGLGDFKFNHTKLIPVINEVR   73 (136)
Q Consensus         2 gf~i~ng~~~~gsviv~p~~v~~W~~--------~~~~dl~~e~l~~l~~~~P~~EvlIiGTG~~~~~~~l~~~l~~~l~   73 (136)
                      +|+| ||++|.+|++|+|++.+.|+.        .+.++++++++..++...|  |++|||||.++.+ ++         
T Consensus        11 ~~~I-~G~~Y~~sViv~p~g~v~~~~~~~s~~~~~t~~~l~~~dl~~ll~~~p--eiiliGtG~~~~~-~~---------   77 (113)
T d1ihna_          11 SVTY-RGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEELLEEKP--ESIIIGSGVHGAL-ET---------   77 (113)
T ss_dssp             EEEE-TTEEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHHHHHTTCC--SEEEEECCTTCCC-EE---------
T ss_pred             EEEE-CCEEeecCEEEcCCCceecccccccccccCccccCCHHHHHHHHhcCC--CEEEEecCccccc-cc---------
Confidence            4788 799999999999998765432        2678999999999999887  9999999999853 22         


Q ss_pred             hh-ccceecChHHHHHHHHHhhhcchhhhhhcc
Q psy14701         74 KH-CNVEVLPTERAIATFNFMVSEGRVAGAALV  105 (136)
Q Consensus        74 ~~-I~vEvM~T~aAcrTyN~L~sEgR~VaAALi  105 (136)
                      .. |++|+|+|++||||||+|++|||+|+|||-
T Consensus        78 ~~~i~~e~m~T~~AcrtyN~L~~egR~v~A~lh  110 (113)
T d1ihna_          78 GFRSDATVLPTCEAIKRYNEERSAGRRVAAIIH  110 (113)
T ss_dssp             SSCCSCEEECHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCCcEEEEChHHHHHHHHHHHhCCCeEEEEEE
Confidence            35 999999999999999999999999999984