Psyllid ID: psy14727

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60-------
MLHTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ
ccccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccc
cccccccccccccccccccHccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHH
mlhtsysyhpaihddsfvrrkqrrnrttFTLQQLEELETAFAqthypdvftreDLAMKINLTEARVQ
mlhtsysyhpaihddsfvrrkqRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ
MLHTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ
***************************TFTLQQLEELETAFAQTHYPDVFTREDLAMKI********
***************************TFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEA*V*
MLHTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ
*************************RTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEA***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MLHTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query67 2.2.26 [Sep-21-2011]
A6NNA5 263 Dorsal root ganglia homeo yes N/A 0.805 0.205 0.888 4e-21
Q8BYH0 263 Dorsal root ganglia homeo no N/A 0.805 0.205 0.888 4e-21
Q62798 263 Dorsal root ganglia homeo yes N/A 0.805 0.205 0.870 5e-21
Q96QS3 562 Homeobox protein ARX OS=H no N/A 0.805 0.096 0.703 2e-16
Q06453 408 Homeobox protein aristale no N/A 0.805 0.132 0.740 2e-16
A6YP92 566 Homeobox protein ARX OS=R no N/A 0.805 0.095 0.703 3e-16
Q26657327 Aristaless homeobox prote no N/A 0.880 0.180 0.677 8e-16
O35085 564 Homeobox protein ARX OS=M no N/A 0.805 0.095 0.703 8e-16
O42115 453 Aristaless-related homeob no N/A 0.805 0.119 0.703 9e-16
P23759 520 Paired box protein Pax-7 no N/A 0.746 0.096 0.7 4e-15
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2 SV=1 Back     alignment and function desciption
 Score =  100 bits (248), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/54 (88%), Positives = 50/54 (92%)

Query: 14 DDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
          DD F+RRKQRRNRTTFTLQQLE LE  FAQTHYPDVFTRE+LAMKINLTEARVQ
Sbjct: 25 DDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78
Transcription factor required for the formation of correct projections from nociceptive sensory neurons to the dorsal horn of the spinal cord and normal perception of pain.
Homo sapiens (taxid: 9606)
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1 SV=2 Back     alignment and function description
>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx PE=2 SV=1 Back     alignment and function description
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1 Back     alignment and function description
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1 SV=2 Back     alignment and function description
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1 Back     alignment and function description
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus purpuratus GN=ALX PE=2 SV=2 Back     alignment and function description
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3 Back     alignment and function description
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1 Back     alignment and function description
>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query67
312377652167 hypothetical protein AND_10977 [Anophele 0.985 0.395 0.969 3e-30
242009008 513 homeobox protein arx, putative [Pediculu 0.970 0.126 0.969 3e-30
195117252 623 GI23866 [Drosophila mojavensis] gi|19391 0.970 0.104 0.953 4e-30
41615484130 TPA_inf: HDC00631 [Drosophila melanogast 0.970 0.5 0.969 5e-30
270011563 327 hypothetical protein TcasGA2_TC005600 [T 0.970 0.198 0.953 5e-30
320544499 587 CG34340 [Drosophila melanogaster] gi|116 0.970 0.110 0.953 7e-30
195148028 370 GL18665 [Drosophila persimilis] gi|19410 0.970 0.175 0.953 1e-29
189240302 283 PREDICTED: similar to CG34340 CG34340-PD 0.955 0.226 0.968 2e-29
17003839568 conserved hypothetical protein [Culex qu 1.0 0.985 0.955 2e-29
157110497 180 hypothetical protein AaeL_AAEL015234 [Ae 0.955 0.355 0.984 2e-29
>gi|312377652|gb|EFR24431.1| hypothetical protein AND_10977 [Anopheles darlingi] Back     alignment and taxonomy information
 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 64/66 (96%), Positives = 65/66 (98%)

Query: 2   LHTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINL 61
            HTSYSYHPAIHD+SFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINL
Sbjct: 99  FHTSYSYHPAIHDESFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINL 158

Query: 62  TEARVQ 67
           TEARVQ
Sbjct: 159 TEARVQ 164

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242009008|ref|XP_002425285.1| homeobox protein arx, putative [Pediculus humanus corporis] gi|212509050|gb|EEB12547.1| homeobox protein arx, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|195117252|ref|XP_002003163.1| GI23866 [Drosophila mojavensis] gi|193913738|gb|EDW12605.1| GI23866 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|41615484|tpg|DAA03500.1| TPA_inf: HDC00631 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|270011563|gb|EFA08011.1| hypothetical protein TcasGA2_TC005600 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|320544499|ref|NP_001097075.2| CG34340 [Drosophila melanogaster] gi|116875717|gb|ABK30908.1| IP09201p [Drosophila melanogaster] gi|318068302|gb|ABV53614.2| CG34340 [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195148028|ref|XP_002014976.1| GL18665 [Drosophila persimilis] gi|194106929|gb|EDW28972.1| GL18665 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|189240302|ref|XP_001813949.1| PREDICTED: similar to CG34340 CG34340-PD [Tribolium castaneum] Back     alignment and taxonomy information
>gi|170038395|ref|XP_001847036.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167882013|gb|EDS45396.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157110497|ref|XP_001651130.1| hypothetical protein AaeL_AAEL015234 [Aedes aegypti] gi|108868381|gb|EAT32606.1| AAEL015234-PA, partial [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query67
FB|FBgn0085369 607 CG34340 [Drosophila melanogast 0.970 0.107 0.953 1e-28
UNIPROTKB|E2QSM2 264 DRGX "Uncharacterized protein" 0.910 0.231 0.803 1.5e-21
UNIPROTKB|E1BYW7 260 DRGX "Uncharacterized protein" 0.805 0.207 0.888 4.9e-21
UNIPROTKB|E1BDA0 263 DRGX "Uncharacterized protein" 0.805 0.205 0.888 4.9e-21
UNIPROTKB|A6NNA5 263 DRGX "Dorsal root ganglia home 0.805 0.205 0.888 4.9e-21
UNIPROTKB|C9JW76 268 DRGX "Dorsal root ganglia home 0.805 0.201 0.888 4.9e-21
UNIPROTKB|F1SDX7 263 DRGX "Uncharacterized protein" 0.805 0.205 0.888 4.9e-21
MGI|MGI:2148204 263 Prrxl1 "paired related homeobo 0.805 0.205 0.888 4.9e-21
RGD|628616 263 Prrxl1 "paired related homeobo 0.805 0.205 0.870 1.7e-20
UNIPROTKB|Q62798 263 Drgx "Dorsal root ganglia home 0.805 0.205 0.870 1.7e-20
FB|FBgn0085369 CG34340 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 326 (119.8 bits), Expect = 1.0e-28, P = 1.0e-28
 Identities = 62/65 (95%), Positives = 65/65 (100%)

Query:     3 HTSYSYHPAIHDDSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLT 62
             +TSYSYHPAIHD++FVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLT
Sbjct:    53 YTSYSYHPAIHDETFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLT 112

Query:    63 EARVQ 67
             EARVQ
Sbjct:   113 EARVQ 117
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISS
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0007517 "muscle organ development" evidence=IMP
GO:0048813 "dendrite morphogenesis" evidence=IMP
UNIPROTKB|E2QSM2 DRGX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYW7 DRGX "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BDA0 DRGX "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A6NNA5 DRGX "Dorsal root ganglia homeobox protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JW76 DRGX "Dorsal root ganglia homeobox protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SDX7 DRGX "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2148204 Prrxl1 "paired related homeobox protein-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|628616 Prrxl1 "paired related homeobox protein-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q62798 Drgx "Dorsal root ganglia homeobox protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A6NNA5DRGX_HUMANNo assigned EC number0.88880.80590.2053yesN/A
Q62798DRGX_RATNo assigned EC number0.87030.80590.2053yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query67
pfam0004657 pfam00046, Homeobox, Homeobox domain 4e-16
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 9e-13
smart0038957 smart00389, HOX, Homeodomain 1e-12
COG5576156 COG5576, COG5576, Homeodomain-containing transcrip 5e-06
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain Back     alignment and domain information 
 Score = 64.4 bits (158), Expect = 4e-16
 Identities = 25/45 (55%), Positives = 31/45 (68%)

Query: 23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
          RR RTTFT +QLEELE  F +  YP    RE+LA K+ LTE +V+
Sbjct: 1  RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVK 45

Length = 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>gnl|CDD|197696 smart00389, HOX, Homeodomain Back     alignment and domain information
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 67
KOG2251|consensus 228 99.53
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 99.52
KOG0488|consensus309 99.51
KOG0484|consensus125 99.5
KOG0850|consensus245 99.45
KOG0842|consensus 307 99.45
KOG0843|consensus197 99.42
KOG0489|consensus261 99.39
PF0004657 Homeobox: Homeobox domain not present here.; Inter 99.32
KOG0485|consensus 268 99.28
KOG0487|consensus308 99.27
KOG0492|consensus246 99.23
KOG0494|consensus 332 99.21
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.17
KOG0486|consensus 351 99.14
KOG0493|consensus342 99.13
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.09
KOG0848|consensus317 98.98
KOG0849|consensus 354 98.93
KOG0491|consensus194 98.91
KOG0844|consensus 408 98.79
COG5576156 Homeodomain-containing transcription factor [Trans 98.79
KOG0490|consensus 235 98.76
KOG3802|consensus398 98.54
KOG4577|consensus 383 98.28
KOG0483|consensus 198 98.14
KOG0847|consensus288 98.07
KOG2252|consensus558 97.99
KOG0774|consensus334 97.52
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 97.29
KOG0775|consensus304 97.24
KOG1168|consensus385 97.22
KOG0490|consensus235 97.2
PF0496753 HTH_10: HTH DNA binding domain; InterPro: IPR00705 95.33
PF0421853 CENP-B_N: CENP-B N-terminal DNA-binding domain; In 93.96
KOG1146|consensus 1406 92.68
COG3413215 Predicted DNA binding protein [General function pr 92.29
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 88.97
>KOG2251|consensus Back     alignment and domain information 
Probab=99.53  E-value=1.9e-14  Score=84.16  Aligned_cols=51  Identities=67%  Similarity=0.927  Sum_probs=48.4

Q ss_pred             ccccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727         17 FVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ   67 (67)
Q Consensus        17 ~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk   67 (67)
                      ..+++.||.||.|+..|+.+||..|.+..||+...|++||.+|+|++.+||
T Consensus        32 ~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVq   82 (228)
T KOG2251|consen   32 SGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQ   82 (228)
T ss_pred             ccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhh
Confidence            457889999999999999999999999999999999999999999999886

>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG0488|consensus Back     alignment and domain information
>KOG0484|consensus Back     alignment and domain information
>KOG0850|consensus Back     alignment and domain information
>KOG0842|consensus Back     alignment and domain information
>KOG0843|consensus Back     alignment and domain information
>KOG0489|consensus Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>KOG0485|consensus Back     alignment and domain information
>KOG0487|consensus Back     alignment and domain information
>KOG0492|consensus Back     alignment and domain information
>KOG0494|consensus Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>KOG0486|consensus Back     alignment and domain information
>KOG0493|consensus Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>KOG0848|consensus Back     alignment and domain information
>KOG0849|consensus Back     alignment and domain information
>KOG0491|consensus Back     alignment and domain information
>KOG0844|consensus Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>KOG0490|consensus Back     alignment and domain information
>KOG3802|consensus Back     alignment and domain information
>KOG4577|consensus Back     alignment and domain information
>KOG0483|consensus Back     alignment and domain information
>KOG0847|consensus Back     alignment and domain information
>KOG2252|consensus Back     alignment and domain information
>KOG0774|consensus Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>KOG0775|consensus Back     alignment and domain information
>KOG1168|consensus Back     alignment and domain information
>KOG0490|consensus Back     alignment and domain information
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif Back     alignment and domain information
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere Back     alignment and domain information
>KOG1146|consensus Back     alignment and domain information
>COG3413 Predicted DNA binding protein [General function prediction only] Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query67
3a01_B67 Crystal Structure Of Aristaless And Clawless Homeod 2e-16
3lnq_A58 Structure Of Aristaless Homeodomain In Complex With 4e-14
1fjl_A81 Homeodomain From The Drosophila Paired Protein Boun 6e-14
2m0c_A75 Solution Nmr Structure Of Homeobox Domain Of Human 7e-14
3cmy_A61 Structure Of A Homeodomain In Complex With Dna Leng 8e-14
3a02_A60 Crystal Structure Of Aristaless Homeodomain Length 7e-13
2cue_A80 Solution Structure Of The Homeobox Domain Of The Hu 9e-12
2dms_A80 Solution Structure Of The Homeobox Domain Of Homeob 1e-11
2l7m_P68 Solution Structure Of The Pitx2 Homeodomain R24h Mu 2e-10
2l7f_P68 Solution Structure Of The Pitx2 Homeodomain Length 2e-09
2dmu_A70 Solution Structure Of The Homeobox Domain Of Homeob 3e-08
2k40_A67 Nmr Structure Of Hesx-1 Homeodomain Double Mutant R 5e-05
>pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless Homeodomains Bo Length = 67 Back     alignment and structure 
Iteration: 1

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 44/49 (89%)
Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
          +RKQRR RTTFT  QLEELE AF++THYPDVFTRE+LAMKI LTEAR+Q
Sbjct: 3  KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 51
>pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna Length = 58 Back     alignment and structure
>pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To A Dna Oligonucleotide Length = 81 Back     alignment and structure
>pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4, Northeast Structural Genomics Consortium (Nesg) Target Hr4490c Length = 75 Back     alignment and structure
>pdb|3CMY|A Chain A, Structure Of A Homeodomain In Complex With Dna Length = 61 Back     alignment and structure
>pdb|3A02|A Chain A, Crystal Structure Of Aristaless Homeodomain Length = 60 Back     alignment and structure
>pdb|2CUE|A Chain A, Solution Structure Of The Homeobox Domain Of The Human Paired Box Protein Pax-6 Length = 80 Back     alignment and structure
>pdb|2DMS|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox Protein Otx2 Length = 80 Back     alignment and structure
>pdb|2L7M|P Chain P, Solution Structure Of The Pitx2 Homeodomain R24h Mutant Length = 68 Back     alignment and structure
>pdb|2L7F|P Chain P, Solution Structure Of The Pitx2 Homeodomain Length = 68 Back     alignment and structure
>pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox Protein Goosecoid Length = 70 Back     alignment and structure
>pdb|2K40|A Chain A, Nmr Structure Of Hesx-1 Homeodomain Double Mutant R31lE42L Length = 67 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query67
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 9e-28
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 1e-27
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 3e-27
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 4e-27
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 6e-26
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 2e-25
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 2e-24
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 3e-24
3a02_A60 Homeobox protein aristaless; homeodomain, developm 1e-23
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 3e-22
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 4e-22
1uhs_A72 HOP, homeodomain only protein; structural genomics 9e-20
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 1e-18
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 6e-18
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 7e-18
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 1e-15
3d1n_I151 POU domain, class 6, transcription factor 1; prote 2e-15
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 1e-14
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 3e-14
1lfb_A99 Liver transcription factor (LFB1); transcription r 2e-13
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 2e-13
2xsd_C164 POU domain, class 3, transcription factor 1; trans 1e-12
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 2e-12
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 9e-12
1e3o_C160 Octamer-binding transcription factor 1; transcript 6e-11
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 3e-10
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 2e-09
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 5e-09
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 6e-09
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 2e-08
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 2e-08
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 3e-08
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 3e-08
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 3e-08
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 3e-08
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 3e-08
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 4e-08
3a01_A93 Homeodomain-containing protein; homeodomain, prote 8e-08
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 2e-07
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 3e-07
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 4e-07
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 8e-07
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 3e-06
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 1e-05
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 2e-05
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 4e-05
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 9e-05
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 1e-04
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 3e-04
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 5e-04
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 6e-04
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Length = 81 Back     alignment and structure
 Score = 94.0 bits (234), Expect = 9e-28
 Identities = 32/49 (65%), Positives = 42/49 (85%)

Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
          +RKQRR+RTTF+  QL+ELE AF +T YPD++TRE+LA + NLTEAR+Q
Sbjct: 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 80 Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Length = 80 Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Length = 68 Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Length = 67 Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Length = 60 Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 80 Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 66 Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Length = 73 Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 95 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Length = 151 Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Length = 194 Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Length = 221 Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Length = 99 Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Length = 146 Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Length = 164 Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Length = 155 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Length = 160 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Length = 61 Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Length = 77 Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Length = 58 Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80 Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 69 Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Length = 58 Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Length = 68 Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Length = 84 Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Length = 62 Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Length = 93 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 89 Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75 Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 70 Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Length = 56 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Length = 96 Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Length = 61 Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Length = 68 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 76 Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Length = 60 Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Length = 97 Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Length = 63 Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Length = 72 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query67
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 99.65
1wh5_A80 ZF-HD homeobox family protein; structural genomics 99.63
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 99.62
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 99.6
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 99.6
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 99.59
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 99.59
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 99.58
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 99.58
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.58
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 99.58
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 99.58
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 99.57
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.56
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 99.56
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 99.56
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 99.56
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 99.56
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 99.56
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 99.55
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 99.55
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 99.55
3a01_A93 Homeodomain-containing protein; homeodomain, prote 99.55
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 99.54
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 99.54
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 99.54
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 99.53
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 99.53
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 99.53
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 99.52
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 99.52
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 99.51
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 99.51
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 99.51
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 99.5
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 99.5
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 99.5
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 99.49
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 99.48
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 99.47
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.45
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 99.45
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 99.45
3a02_A60 Homeobox protein aristaless; homeodomain, developm 99.45
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 99.43
1uhs_A72 HOP, homeodomain only protein; structural genomics 99.42
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 99.42
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 99.41
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 99.41
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.4
1e3o_C160 Octamer-binding transcription factor 1; transcript 99.4
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 99.39
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 99.39
2xsd_C164 POU domain, class 3, transcription factor 1; trans 99.39
1lfb_A99 Liver transcription factor (LFB1); transcription r 99.37
3d1n_I151 POU domain, class 6, transcription factor 1; prote 99.37
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.35
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 99.35
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 99.35
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 99.34
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 99.33
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 99.32
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 99.29
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 99.27
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 99.25
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 99.25
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 99.22
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 99.21
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 99.21
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 99.18
2e19_A64 Transcription factor 8; homeobox domain, structura 99.17
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 99.15
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 98.99
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 98.94
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 98.67
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 98.66
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 98.46
2rgt_A169 Fusion of LIM/homeobox protein LHX3, linker, INSU 92.32
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
Probab=99.65  E-value=5.1e-16  Score=78.27  Aligned_cols=53  Identities=36%  Similarity=0.453  Sum_probs=47.9

Q ss_pred             CcccccccCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727         15 DSFVRRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ   67 (67)
Q Consensus        15 ~~~~~~~~rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk   67 (67)
                      .+...++.++.||.|+..|+..||..|..++||+..++.+||..|+|++.+|+
T Consensus        10 ~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~   62 (80)
T 2dmt_A           10 PGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVK   62 (80)
T ss_dssp             SCCCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHee
Confidence            33445677889999999999999999999999999999999999999999885
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 67
d1pufa_77 a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m 5e-14
d2cuea168 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H 1e-12
d2craa158 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( 7e-12
d1bw5a_66 a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { 1e-11
d2e1oa157 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo 1e-11
d2cufa182 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HM 3e-11
d9anta_56 a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila 3e-11
d1fjla_65 a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila 6e-11
d1p7ia_53 a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel 8e-11
d1vnda_77 a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophi 1e-10
d1b72a_88 a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo 1e-10
d1yz8p160 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo 5e-10
d1wh7a_80 a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha 5e-10
d1s7ea150 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M 6e-10
d1ig7a_58 a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculu 9e-10
d1jgga_57 a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( 9e-10
d1le8a_53 a.4.1.1 (A:) Mating type protein A1 Homeodomain {B 2e-09
d1zq3p167 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl 2e-09
d1au7a158 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra 3e-09
d1ftta_68 a.4.1.1 (A:) Thyroid transcription factor 1 homeod 5e-09
d1uhsa_72 a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse 7e-09
d1ocpa_67 a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus 2e-08
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 3e-08
d2cqxa159 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 4e-08
d1x2ma152 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 4e-08
d1lfba_78 a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HN 9e-08
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 1e-07
d1wi3a_71 a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom 2e-07
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 1e-06
d1e3oc157 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human ( 2e-06
d2ecba176 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes prote 4e-04
d2ecca176 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein H 0.001
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox protein hox-a9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.9 bits (140), Expect = 5e-14
 Identities = 17/49 (34%), Positives = 24/49 (48%)

Query: 19 RRKQRRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ 67
           R  R+ R  +T  Q  ELE  F    Y     R ++A  +NLTE +V+
Sbjct: 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 77 Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 58 Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 Back     information, alignment and structure
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Length = 78 Back     information, alignment and structure
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Length = 76 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query67
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 99.66
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 99.66
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 99.65
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 99.65
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 99.64
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 99.64
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 99.62
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 99.61
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 99.61
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 99.61
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 99.61
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 99.58
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 99.58
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 99.57
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.57
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 99.57
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 99.54
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.54
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.5
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 99.49
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.49
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.49
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 99.45
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 99.41
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.29
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.25
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 99.24
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 99.2
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.12
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 98.98
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 98.95
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 98.94
d1ijwc_47 HIN recombinase (DNA-binding domain) {Synthetic} 88.32
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Msx-1 homeodomain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5.7e-17  Score=76.40  Aligned_cols=45  Identities=38%  Similarity=0.592  Sum_probs=42.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCccccC
Q psy14727         23 RRNRTTFTLQQLEELETAFAQTHYPDVFTREDLAMKINLTEARVQ   67 (67)
Q Consensus        23 rr~Rt~~s~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qVk   67 (67)
                      |+.||.||++|+..||..|+.++||+..++.+||..|||++.+|+
T Consensus         1 rr~Rt~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~   45 (58)
T d1ig7a_           1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK   45 (58)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhhee
Confidence            468999999999999999999999999999999999999999884
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Back     information, alignment and structure