Psyllid ID: psy14745

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850----
SEEELRLTFPVRDGIILPPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDRQMNTNWPASVQVSVNATPLMIDRGENKTSHRPLYLKEVCQPGRNTIQITVSACCCSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRNFNNSNSSSMSSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWRVPRGMHVVKNEEDSESCANSKRGMCAGKAMSPGSMTLPTMSNWEMGQSMSPYIPPDMNSKSPFMHIESSAILSFPNGYSMPGRPSFQGHHQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGPNSNANGGSNHQYFGAGNQFPGGVPPNSNQYQEIKECDQKAQISMTYQMHFHNFITMYFHSYQLHNGFLCFTGFQQNEMRNNLTYQQHSSPLPGNPTPPLTPASSTSVPPFVSPNSTSSPFISPPHSVSGRDVKPTFSDIKPTFSDIKPAINPHPQSIASGSMMNNNSGPPSYSMSMNRSSGGNGGGFNDFPSGGNSGDFPGDNSLESLNAMEKSLSEQMPHTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDLATPPSSGSSNGNNPGGPTTNDDILALEQMPHTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDLATPPSSGSSNGNNPGGPTTNDDILALFE
cccccEEEEEEEEccccccEEEccccEEEEEEEEEcHHHHHHHHccccccEEEEEEEcccccccccccccEEEEEccEEEcccccccccccccccccccccccccEEEEEEEcccccEEEEEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccEEEcEEEEEcccccccEEccccccccccccccccHHHHHHHHcccccccccccccccccccEEEcHHHHHHHHHccccccEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccc
ccccccccccccccEEEccccccccccccccEEEEccccccccccccccEEEEEEEEcccccccccccccEEEEEccccccccccccccccccEEEEEEEEccccEEEEEEccccccEEEEEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccEEEEEEEEEEEccccccEEEEccccccccEEEEEcHHHHHHHHccccccEccccccccccccEEEcHHHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHEcccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHcHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHcccccccccccccccccccccccccccHHHHHHcc
seeelrltfpvrdgiilppfrlehnlavsNHVFQLKTTVHQTLMWRSDLELQLKCfhhedrqmntnwpasvqvsvnatplmidrgenktshrplylkevcqpgrntiqITVSACCCSHLFVLqlvhrpsvKSVLQGLLRKRLLTADHCIAKIKrnfnnsnsssmsssdsIEQTALKVSLkcpitfkkitlparghdckhiqcfdlESYLQLncergswrcpvcnkpaqleglevDQYMWGILNtlnnseveevtidatanwrvprgmhvvkneedsescanskrgmcagkamspgsmtlptmsnwemgqsmspyippdmnskspfmhiessailsfpngysmpgrpsfqghhqypsqqpgsgpngapfgpnsapssrgssvrqstpsfpsssgpnsnanggsnhqyfgagnqfpggvppnsnqyqeIKECDQKAQISMTYQMHFHNFITMYFHsyqlhngflcftgfqqnemrnnltyqqhssplpgnptppltpasstsvppfvspnstsspfispphsvsgrdvkptfsdikptfsdikpainphpqsiasgsmmnnnsgppsysmsmnrssggngggfndfpsggnsgdfpgdnsLESLNAMEKSLseqmphtphtphtphtphtpggngppsvppssstqqqdtqtsssnnvstddipsdlnfdpaavidgegqgqenlnllpdnvvdpmellsyldppdlatppssgssngnnpggpttnddilaleqmphtphtphtphtphtpggngppsvppssstqqqdtqtsssnnvstddipsdlnfdpaavidgegqgqenlnllpdnvvdpmellsyldppdlatppssgssngnnpggpttnddILALFE
seeelrltfpvrdgiilpPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDRQMNTNWPASVQVSVNATPLMIdrgenktshrpLYLKEVCQPGRNTIQITVSACCCSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIkrnfnnsnsssmsssDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIdatanwrvprGMHVvkneedsescanSKRGMCAGKAMSPGSMTLPTMSNWEMGQSMSPYIPPDMNSKSPFMHIESSAILSFPNGYSMPGRPSFQGHHQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGPNSNANGGSNHQYFGAGNQFPGGVPPNSNQYQEIKECDQKAQISMTYQMHFHNFITMYFHSYQLHNGFLCFTGFQQNEMRNNLTYQQHSSPLPGNPTPPLTPASSTSVPPFVSPNSTSSPFISPPHSVSGRDVKPTFSDIKPTFSDIKPAINPHPQSIASGSMMNNNSGPPSYSMSMNRSSGGNGGGFNDFPSGGNSGDFPGDNSLESLNAMEKSLSEQMPHTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDLATPpssgssngnnpGGPTTNDDILALEQMPHTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDLATPPssgssngnnpggpttNDDILALFE
SEEELRLTFPVRDGIILPPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDRQMNTNWPASVQVSVNATPLMIDRGENKTSHRPLYLKEVCQPGRNTIQITVSACCCSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRnfnnsnsssmsssdsIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWRVPRGMHVVKNEEDSESCANSKRGMCAGKAMSPGSMTLPTMSNWEMGQSMSPYIPPDMNSKSPFMHIESSAILSFPNGYSMPGRPSFQGHHQYPSQQPGSGPNGAPFGPNSAPSSRGssvrqstpsfpsssgpnsnanggsnHQYFGAGNQFPGGVPPNSNQYQEIKECDQKAQISMTYQMHFHNFITMYFHSYQLHNGFLCFTGFQQNEMRNNLTYQQHSSplpgnptppltpasstsvppFVSPNSTSSPFISPPHSVSGRDVKPTFSDIKPTFSDIKPAINPHPQSIASGSMMNNNSGPpsysmsmnrssggngggfndfpsggnsgDFPGDNSLESLNAMEKSLSEQMphtphtphtphtphtpggngppsvppssstqqqdtqtsssnnvstddIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDLAtppssgssngnnpggpttnDDILALEQMphtphtphtphtphtpggngppsvppssstqqqdtqtsssnnvstddIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDLAtppssgssngnnpggpttnDDILALFE
*****RLTFPVRDGIILPPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDRQMNTNWPASVQVSVNATPLMIDRG****SHRPLYLKEVCQPGRNTIQITVSACCCSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKR*******************ALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWRVPRGMHV****************************************************************************************************************************************************************CDQKAQISMTYQMHFHNFITMYFHSYQLHNGFLCFTGFQQ*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
**EELRLTFPVRDGIILPPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDRQMNTNWPASVQVSVNATPLMI**********PLYLKEVCQPGRNTIQITVSACCCSHLFVLQLVHRPSVKSVLQGLL******ADHCIAKIKRNFNNS**SSMSSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWRVPRGM******E**ESCANSKRGMCAGKAMSPGSMTLPTMSN**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VVDPMELLSYL**************************DILALFE
SEEELRLTFPVRDGIILPPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDRQMNTNWPASVQVSVNATPLMIDRGENKTSHRPLYLKEVCQPGRNTIQITVSACCCSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRNFNN**************TALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWRVPRGMHVVK**********SKRGMCAGKAMSPGSMTLPTMSNWEMGQSMSPYIPPDMNSKSPFMHIESSAILSFPNGYSMPGRPSF***************NGAPFG****************************ANGGSNHQYFGAGNQFPGGVPPNSNQYQEIKECDQKAQISMTYQMHFHNFITMYFHSYQLHNGFLCFTGFQQNEMRNNLTYQQ*********************************************VKPTFSDIKPTFSDIKPAINPHPQSIASGSMMNNNSGPPSYSMSMNRSSGGNGGGFNDFPSGGNSGDFPGDNSLESLNAMEK***************************************************DDIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDL**************GGPTTNDDILALEQMPHTP*****************************************DDIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDL*************PGGPTTNDDILALFE
****LRLTFPVRDGIILPPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDRQMNTNWPASVQVSVNATPLMIDRGENKTSHRPLYLKEVCQPGRNTIQITVSACCCSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRNFNNSNS*SMSSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWRVPRG****************K******************************************************************G*HQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGPNSNANGGSNHQYFGAGNQFPGGVPPNSNQYQEIKECDQKAQISMTYQMHFHNFITMYFHSYQLHNGFLCFTGFQQNEMRNNLTYQQHSSPLPGNPTPPLTPASSTSVPPFVSPNSTSSPFISPPHSVSGRDVKPTFSDIKPTFSDIKPAINPHPQSIASG*********PSYSMSMNRSSGGNGGGFNDFPSGGNSGDFPGDNSLESLNAMEK*L******************************************************DLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDLATPP*****************DILALEQMPHTPHTP********************************************LNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDLA*************************F*
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SEEELRLTFPVRDGIILPPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDRQMNTNWPASVQVSVNATPLMIDRGENKTSHRPLYLKEVCQPGRNTIQITVSACCCSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRNFNNSNSSSMSSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWRVPRGMHVVKNEEDSESCANSKRGMCAGKAMSPGSMTLPTMSNWEMGQSMSPYIPPDMNSKSPFMHIESSAILSFPNGYSMPGRPSFQGHHQYPSQQPGSGPNGAPFGPNSAPSSRGSSVRQSTPSFPSSSGPNSNANGGSNHQYFGAGNQFPGGVPPNSNQYQEIKECDQKAQISMTYQMHFHNFITMYFHSYQLHNGFLCFTGFQQNEMRNNLTYQQHSSPLPGNPTPPLTPASSTSVPPFVSPNSTSSPFISPPHSVSGRDVKPTFSDIKPTFSDIKPAINPHPQSIASGSMMNNNSGPPSYSMSMNRSSGGNGGGFNDFPSGGNSGDFPGDNSLESLNAMEKSLSEQMPHTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDLATPPSSGSSNGNNPGGPTTNDDILALEQMPHTPHTPHTPHTPHTPGGNGPPSVPPSSSTQQQDTQTSSSNNVSTDDIPSDLNFDPAAVIDGEGQGQENLNLLPDNVVDPMELLSYLDPPDLATPPSSGSSNGNNPGGPTTNDDILALFE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query854 2.2.26 [Sep-21-2011]
Q9ULJ61067 Zinc finger MIZ domain-co yes N/A 0.341 0.273 0.726 1e-134
Q6P1E11072 Zinc finger MIZ domain-co yes N/A 0.341 0.272 0.726 1e-134
Q8NF64920 Zinc finger MIZ domain-co no N/A 0.358 0.332 0.670 1e-128
Q8CIE2920 Zinc finger MIZ domain-co no N/A 0.358 0.332 0.670 1e-127
O94451727 E3 SUMO-protein ligase pl yes N/A 0.189 0.222 0.314 5e-19
Q6L4L4875 E3 SUMO-protein ligase SI no N/A 0.263 0.257 0.270 2e-18
Q8C5D8621 E3 SUMO-protein ligase PI no N/A 0.154 0.212 0.35 1e-17
O75928621 E3 SUMO-protein ligase PI no N/A 0.154 0.212 0.35 1e-17
Q6AZ28572 E3 SUMO-protein ligase PI no N/A 0.152 0.227 0.355 2e-17
Q6ASW7813 E3 SUMO-protein ligase SI no N/A 0.261 0.274 0.267 2e-17
>sp|Q9ULJ6|ZMIZ1_HUMAN Zinc finger MIZ domain-containing protein 1 OS=Homo sapiens GN=ZMIZ1 PE=1 SV=3 Back     alignment and function desciption
 Score =  480 bits (1235), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 223/307 (72%), Positives = 256/307 (83%), Gaps = 15/307 (4%)

Query: 3   EELRLTFPVRDGIILPPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDRQ 62
           +ELRLTFPVRDG++L PFRLEHNLAVSNHVF L+ TVHQTLMWRSDLELQ KC+HHEDRQ
Sbjct: 560 DELRLTFPVRDGVVLEPFRLEHNLAVSNHVFHLRPTVHQTLMWRSDLELQFKCYHHEDRQ 619

Query: 63  MNTNWPASVQVSVNATPLMIDRGENKTSHRPLYLKEVCQPGRNTIQITVSACCCSHLFVL 122
           MNTNWPASVQVSVNATPL I+RG+NKTSH+PL+LK VCQPGRNTIQITV+ACCCSHLFVL
Sbjct: 620 MNTNWPASVQVSVNATPLTIERGDNKTSHKPLHLKHVCQPGRNTIQITVTACCCSHLFVL 679

Query: 123 QLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRNFNNSNSSS----MSSSDSIEQTALKVS 178
           QLVHRPSV+SVLQGLL+KRLL A+HCI KIKRNF++  +SS    ++  D +EQTA+KVS
Sbjct: 680 QLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSVAASSGNTTLNGEDGVEQTAIKVS 739

Query: 179 LKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYM 238
           LKCPITF++I LPARGHDCKH+QCFDLESYLQLNCERG+WRCPVCNK A LEGLEVDQYM
Sbjct: 740 LKCPITFRRIQLPARGHDCKHVQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYM 799

Query: 239 WGILNTLNNSEVEEVTIDATANWR---VPRGMHVVKNEEDSESCANSKRGMCAGKAMSPG 295
           WGILN + +SE EEVTID T +WR   +   +H+    +D      SKR     K MSP 
Sbjct: 800 WGILNAIQHSEFEEVTIDPTCSWRPVPIKSDLHI----KDDPDGIPSKR----FKTMSPS 851

Query: 296 SMTLPTM 302
            M +P +
Sbjct: 852 QMIMPNV 858
Increases ligand-dependent transcriptional activity of AR and promotes AR sumoylation. The stimulation of AR activity is dependent upon sumoylation.
Homo sapiens (taxid: 9606)
>sp|Q6P1E1|ZMIZ1_MOUSE Zinc finger MIZ domain-containing protein 1 OS=Mus musculus GN=Zmiz1 PE=2 SV=1 Back     alignment and function description
>sp|Q8NF64|ZMIZ2_HUMAN Zinc finger MIZ domain-containing protein 2 OS=Homo sapiens GN=ZMIZ2 PE=1 SV=2 Back     alignment and function description
>sp|Q8CIE2|ZMIZ2_MOUSE Zinc finger MIZ domain-containing protein 2 OS=Mus musculus GN=Zmiz2 PE=2 SV=2 Back     alignment and function description
>sp|O94451|PLI1_SCHPO E3 SUMO-protein ligase pli1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pli1 PE=1 SV=3 Back     alignment and function description
>sp|Q6L4L4|SIZ1_ORYSJ E3 SUMO-protein ligase SIZ1 OS=Oryza sativa subsp. japonica GN=SIZ1 PE=1 SV=1 Back     alignment and function description
>sp|Q8C5D8|PIAS2_MOUSE E3 SUMO-protein ligase PIAS2 OS=Mus musculus GN=Pias2 PE=1 SV=2 Back     alignment and function description
>sp|O75928|PIAS2_HUMAN E3 SUMO-protein ligase PIAS2 OS=Homo sapiens GN=PIAS2 PE=1 SV=3 Back     alignment and function description
>sp|Q6AZ28|PIAS2_RAT E3 SUMO-protein ligase PIAS2 OS=Rattus norvegicus GN=Pias2 PE=1 SV=1 Back     alignment and function description
>sp|Q6ASW7|SIZ2_ORYSJ E3 SUMO-protein ligase SIZ2 OS=Oryza sativa subsp. japonica GN=SIZ2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query854
270001965911 hypothetical protein TcasGA2_TC000880 [T 0.385 0.361 0.804 1e-164
91076944908 PREDICTED: similar to sumo ligase [Tribo 0.384 0.361 0.806 1e-164
242007194779 restnoic acid-induced protein, putative 0.371 0.406 0.843 1e-161
380020906932 PREDICTED: LOW QUALITY PROTEIN: zinc fin 0.366 0.335 0.829 1e-161
328776648952 PREDICTED: zinc finger MIZ domain-contai 0.366 0.328 0.829 1e-161
383861600 959 PREDICTED: LOW QUALITY PROTEIN: zinc fin 0.366 0.326 0.826 1e-160
307169077902 Zinc finger MIZ domain-containing protei 0.365 0.345 0.806 1e-157
357616023 1018 putative sumo ligase [Danaus plexippus] 0.381 0.320 0.776 1e-157
332028278908 Zinc finger MIZ domain-containing protei 0.365 0.343 0.791 1e-155
307201374 1069 Zinc finger MIZ domain-containing protei 0.367 0.293 0.792 1e-154
>gi|270001965|gb|EEZ98412.1| hypothetical protein TcasGA2_TC000880 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  584 bits (1506), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 275/342 (80%), Positives = 306/342 (89%), Gaps = 13/342 (3%)

Query: 2   EEELRLTFPVRDGIILPPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDR 61
           ++ELRLTFPVRDGIILPPFRLEHNLAVSNHVFQLK TVHQTLMWRSDLELQLKCFHHEDR
Sbjct: 395 DDELRLTFPVRDGIILPPFRLEHNLAVSNHVFQLKPTVHQTLMWRSDLELQLKCFHHEDR 454

Query: 62  QMNTNWPASVQVSVNATPLMIDRGENKTSHRPLYLKEVCQPGRNTIQITVSACCCSHLFV 121
           QMNTNWPASVQVSVNATPL+IDRGENKTSH+PLYLK+VCQPGRNTIQITVSACCCSHLFV
Sbjct: 455 QMNTNWPASVQVSVNATPLIIDRGENKTSHKPLYLKDVCQPGRNTIQITVSACCCSHLFV 514

Query: 122 LQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRNFNNSNSSSMSSSDS--IEQTALKVSL 179
           LQLVHRPSV+SVLQGLLRKRLLTADHCIAKIKRNF N+NS      D   +EQTALKVSL
Sbjct: 515 LQLVHRPSVRSVLQGLLRKRLLTADHCIAKIKRNFGNTNSGPNMDRDRDPVEQTALKVSL 574

Query: 180 KCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMW 239
           KCPIT+K+ITLPARGHDCKHIQCFDLESYLQ+NCERG+WRCPVCNKPAQLEGLEVDQYMW
Sbjct: 575 KCPITYKRITLPARGHDCKHIQCFDLESYLQMNCERGAWRCPVCNKPAQLEGLEVDQYMW 634

Query: 240 GILNTLNNSEVEEVTIDATANWRVPRGM-HVVKNEEDSESCANSKRGMCAGKAMSPGSMT 298
           GILNTL+NSEV+EVTID++ANW+  +G+   +K E+D++SC  +KR     KAMSPGSMT
Sbjct: 635 GILNTLSNSEVDEVTIDSSANWKAAKGLGATIKMEDDNDSCG-AKR---LNKAMSPGSMT 690

Query: 299 LPTMSNWEMGQSMSPYIPPDMNSKSPFMHIESSAILSFPNGY 340
           LPTM+NW+M Q+MSPYIPPDMNS      I S ++++ P  Y
Sbjct: 691 LPTMNNWDMSQAMSPYIPPDMNS------IASGSMMNGPPSY 726

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91076944|ref|XP_975232.1| PREDICTED: similar to sumo ligase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|242007194|ref|XP_002424427.1| restnoic acid-induced protein, putative [Pediculus humanus corporis] gi|212507827|gb|EEB11689.1| restnoic acid-induced protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|380020906|ref|XP_003694317.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger MIZ domain-containing protein 1-like [Apis florea] Back     alignment and taxonomy information
>gi|328776648|ref|XP_392853.4| PREDICTED: zinc finger MIZ domain-containing protein 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|383861600|ref|XP_003706273.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger MIZ domain-containing protein 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307169077|gb|EFN61921.1| Zinc finger MIZ domain-containing protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|357616023|gb|EHJ69965.1| putative sumo ligase [Danaus plexippus] Back     alignment and taxonomy information
>gi|332028278|gb|EGI68325.1| Zinc finger MIZ domain-containing protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307201374|gb|EFN81207.1| Zinc finger MIZ domain-containing protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query854
UNIPROTKB|I3LDU8985 I3LDU8 "Uncharacterized protei 0.423 0.367 0.630 9.9e-131
UNIPROTKB|I3LJD11021 ZMIZ1 "Uncharacterized protein 0.412 0.344 0.630 2.6e-130
UNIPROTKB|I3L8P9943 I3L8P9 "Uncharacterized protei 0.415 0.376 0.630 6.9e-130
UNIPROTKB|F1MP121066 ZMIZ1 "Uncharacterized protein 0.405 0.324 0.632 8.8e-130
MGI|MGI:30406931072 Zmiz1 "zinc finger, MIZ-type c 0.405 0.322 0.632 1.1e-129
UNIPROTKB|E2RGZ01072 ZMIZ1 "Uncharacterized protein 0.405 0.322 0.632 1.4e-129
RGD|13116201072 Zmiz1 "zinc finger, MIZ-type c 0.405 0.322 0.632 1.4e-129
UNIPROTKB|F1NFB5970 F1NFB5 "Uncharacterized protei 0.411 0.361 0.631 1.8e-129
UNIPROTKB|Q9ULJ61067 ZMIZ1 "Zinc finger MIZ domain- 0.405 0.324 0.629 2.3e-129
UNIPROTKB|F1S2E41072 ZMIZ1 "Uncharacterized protein 0.405 0.322 0.629 2.3e-129
UNIPROTKB|I3LDU8 I3LDU8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
 Score = 1199 (427.1 bits), Expect = 9.9e-131, Sum P(2) = 9.9e-131
 Identities = 244/387 (63%), Positives = 278/387 (71%)

Query:     3 EELRLTFPVRDGIILPPFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLKCFHHEDRQ 62
             +ELRLTFPVRDG++L PFRLEHNLAVSNHVF L+ TVHQTLMWRSDLELQ KC+HHEDRQ
Sbjct:   476 DELRLTFPVRDGVVLEPFRLEHNLAVSNHVFHLRPTVHQTLMWRSDLELQFKCYHHEDRQ 535

Query:    63 MNTNWPASVQVSVNATPLMIDRGENKTSHRPLYLKEVCQPGRNTIQITVSACCCSHLFVL 122
             MNTNWPASVQVSVNATPL I+RG+NKTSH+PL+LK VCQPGRNTIQITV+ACCCSHLFVL
Sbjct:   536 MNTNWPASVQVSVNATPLTIERGDNKTSHKPLHLKHVCQPGRNTIQITVTACCCSHLFVL 595

Query:   123 QLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRXXXXXXXXXXXXXXX----IEQTALKVS 178
             QLVHRPSV+SVLQGLL+KRLL A+HCI KIKR                   +EQTA+KVS
Sbjct:   596 QLVHRPSVRSVLQGLLKKRLLPAEHCITKIKRNFSSVAASSGNTTLNGEDGVEQTAIKVS 655

Query:   179 LKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYM 238
             LKCPITF++I LPARGHDCKH+QCFDLESYLQLNCERG+WRCPVCNK A LEGLEVDQYM
Sbjct:   656 LKCPITFRRIQLPARGHDCKHVQCFDLESYLQLNCERGTWRCPVCNKTALLEGLEVDQYM 715

Query:   239 WGILNTLNNSEVEEVTIDATANWR-VP--RGMHVVKNEEDSESCANSKRGMCAGKAMSPG 295
             WGILN + +SE EEVTID T +WR VP    +H+ K++ D      SKR     K MSP 
Sbjct:   716 WGILNAIQHSEFEEVTIDPTCSWRPVPIKSDLHI-KDDPDG---IPSKRF----KTMSPS 767

Query:   296 SMTLPTMSNW--EMGQSMSPY-IPPDMNSKSPFMHIESSAILSFP-NGYSMPGRPSFQGH 351
              M +P +      +G   SPY +PP     +   +   S+ LS+P N Y   G   F   
Sbjct:   768 QMIMPNVMEMIAALGPGPSPYPLPPPPGGTNSVCY---SSELSWPRNNYQGHGNFDFVHT 824

Query:   352 HQYPSQQPGSGPNGAPFGPNSAPSSRG 378
             H  P   P     G P  P S P   G
Sbjct:   825 HGSPGS-PSLRSCGHP--PLSGPGLAG 848
GO:0008270 "zinc ion binding" evidence=IEA
UNIPROTKB|I3LJD1 ZMIZ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3L8P9 I3L8P9 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MP12 ZMIZ1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:3040693 Zmiz1 "zinc finger, MIZ-type containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGZ0 ZMIZ1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1311620 Zmiz1 "zinc finger, MIZ-type containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NFB5 F1NFB5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9ULJ6 ZMIZ1 "Zinc finger MIZ domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2E4 ZMIZ1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
pfam0289150 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger 3e-25
pfam1178957 pfam11789, zf-Nse, Zinc-finger of the MIZ type in 3e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 7e-04
PHA03247 3151 PHA03247, PHA03247, large tegument protein UL36; P 0.001
>gnl|CDD|111745 pfam02891, zf-MIZ, MIZ/SP-RING zinc finger Back     alignment and domain information 
 Score = 98.5 bits (246), Expect = 3e-25
 Identities = 30/50 (60%), Positives = 39/50 (78%)

Query: 177 VSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKP 226
           VSLKCPI++ +I++P RG  CKHIQCFDL S+L+ N    +W CPVC+KP
Sbjct: 1   VSLKCPISYLRISIPVRGRFCKHIQCFDLLSFLESNERTPTWNCPVCDKP 50

This domain has SUMO (small ubiquitin-like modifier) ligase activity and is involved in DNA repair and chromosome organisation. Length = 50
>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
4fo9_A360 Crystal Structure Of The E3 Sumo Ligase Pias2 Lengt 2e-16
3i2d_A371 Crystal Structure Of S. Cerevisiae Sumo E3 Ligase S 3e-11
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2 Length = 360 Back     alignment and structure 
Iteration: 1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 104/226 (46%), Gaps = 21/226 (9%)
Query: 49  LELQLK-CFHHEDRQMNTNWPASVQVSVNA--------TPLMIDRGENKTSHRPLYLKEV 99
           +++QL+ C          N+P S+ + VN          P   +  E K   RPL +  +
Sbjct: 79  VQVQLRLCLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSL 138
Query: 100 CQPGR---NTIQIT-VSACCCSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRX 155
            +      N I I+  S    ++   + LV + +   +LQ L  K +   DH  A IK  
Sbjct: 139 VRLSSAVPNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEK 198
Query: 156 XXXXXXXXXXXXXXIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCER 215
                         I  T+L+VSL CP+   ++T+P R   C H+QCFD   YLQ+N ++
Sbjct: 199 LTADPDSE------IATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKK 252
Query: 216 GSWRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANW 261
            +W CPVC+K A  E L +D     ILN  + S+V+E+      +W
Sbjct: 253 PTWICPVCDKKAAYESLILDGLFMEILN--DCSDVDEIKFQEDGSW 296
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1 Length = 371 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query854
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 7e-52
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 1e-51
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 2e-17
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 3e-06
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 2e-05
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 7e-05
1m2v_B 926 SEC24, protein transport protein SEC24, SEC24P, SE 2e-04
3k1f_M197 Transcription initiation factor IIB; RNA polymeras 8e-04
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Length = 360 Back     alignment and structure
 Score =  184 bits (468), Expect = 7e-52
 Identities = 79/322 (24%), Positives = 124/322 (38%), Gaps = 38/322 (11%)

Query: 9   FPVRDGIILP---PFRLEHNLAVSNHVFQLKTTVHQTLMWRSDLELQLK----------- 54
           + V D +I P                +F L     + +    D     +           
Sbjct: 26  YDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRL 85

Query: 55  CFHHEDRQMNTNWPASVQVSVNAT--------PLMIDRGENKTSHRPLYLKEVCQPGR-- 104
           C          N+P S+ + VN          P   +  E K   RPL +  + +     
Sbjct: 86  CLAETSCPQEDNYPNSLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAV 145

Query: 105 -NTIQIT-VSACCCSHLFVLQLVHRPSVKSVLQGLLRKRLLTADHCIAKIKRNFNNSNSS 162
            N I I+  S    ++   + LV + +   +LQ L  K +   DH  A IK         
Sbjct: 146 PNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEKLTAD--- 202

Query: 163 SMSSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPV 222
                  I  T+L+VSL CP+   ++T+P R   C H+QCFD   YLQ+N ++ +W CPV
Sbjct: 203 ---PDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPV 259

Query: 223 CNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWRVPRGMHVVKNEEDSESCANS 282
           C+K A  E L +D     ILN    S+V+E+      +W   R     K E    S    
Sbjct: 260 CDKKAAYESLILDGLFMEILNDC--SDVDEIKFQEDGSWCPMRP----KKEAMKVSSQPC 313

Query: 283 KRGMCAGKAMSPGSMTLPTMSN 304
            +   +     P S+T+ + ++
Sbjct: 314 TKIESSSVLSKPCSVTVASEAS 335
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371 Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926 Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query854
4fo9_A360 E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom 100.0
3i2d_A371 E3 SUMO-protein ligase SIZ1; signal transduction, 100.0
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 98.84
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 97.47
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 97.4
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 97.15
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 96.97
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 96.92
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 96.72
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 96.64
2f42_A179 STIP1 homology and U-box containing protein 1; cha 96.4
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 96.31
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 95.66
2ecw_A85 Tripartite motif-containing protein 30; metal bind 95.61
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 95.5
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 95.49
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 95.28
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 95.16
1z6u_A150 NP95-like ring finger protein isoform B; structura 95.13
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 95.05
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 95.04
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 94.69
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 94.67
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 94.32
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 94.28
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 94.16
2ysl_A73 Tripartite motif-containing protein 31; ring-type 93.81
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 93.2
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 93.12
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 92.93
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 92.67
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 91.65
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 90.98
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 89.2
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 86.4
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 86.4
2ect_A78 Ring finger protein 126; metal binding protein, st 86.11
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 85.99
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 85.37
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 84.92
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 83.14
2ysj_A63 Tripartite motif-containing protein 31; ring-type 81.74
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 80.33
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B Back     alignment and structure
Probab=100.00  E-value=4.5e-53  Score=451.60  Aligned_cols=257  Identities=28%  Similarity=0.475  Sum_probs=213.5

Q ss_pred             cccccceecccccCCeeeecc----cccceeeEEecccchhcccccC----------CccEEEE-eeecCCCcCCCCCCC
Q psy14745          5 LRLTFPVRDGIILPPFRLEHN----LAVSNHVFQLKTTVHQTLMWRS----------DLELQLK-CFHHEDRQMNTNWPA   69 (854)
Q Consensus         5 ~RL~FpV~dG~vLpPfRLe~N----lavSnhvFqLk~t~~qtLv~Rs----------dlELQLR-Ci~l~Drq~~t~WP~   69 (854)
                      -+|+||.+...+|.|+.|...    ++.+..+|+|++.+...+..+.          .++|||| |...+...+++.||.
T Consensus        21 k~lPFy~v~~~l~~Pt~L~~~~~~~~~~~~f~f~lt~~q~~~i~~~~~~~~~~~~~~~vqvqlRfC~~~~~~~q~~~fP~  100 (360)
T 4fo9_A           21 KNLPFYDVLDVLIKPTSLVQSSIQRFQEKFFIFALTPQQVREICISRDFLPGGRRDYTVQVQLRLCLAETSCPQEDNYPN  100 (360)
T ss_dssp             CCCTTEEEEEEEEEEEECCCCSSCSEEEEEEEECCCHHHHHHHHTCEEECTTSCEEESEEEEEEEEEC-C-CCBCCBCCT
T ss_pred             cCCCchHhHhhhcCceecccccCcccccceeEEEcCHHHHHHHhhccccccccccceeEEEEEEEEEccCCCcccccCCC
Confidence            378999999999999999974    4567889999986655554331          2466777 777666788999999


Q ss_pred             ceEEEEcCeeccccC--------CCCCCCCCCccccccccCc---ccEEEEEEecc-ccceeEEEEEeeccCHHHHHHHH
Q psy14745         70 SVQVSVNATPLMIDR--------GENKTSHRPLYLKEVCQPG---RNTIQITVSAC-CCSHLFVLQLVHRPSVKSVLQGL  137 (854)
Q Consensus        70 ~I~IsVNgkpV~I~R--------genKrsDrPVdIT~lcrpG---rNtIqIT~ss~-~~s~lFvV~LVkr~SVeqVLq~L  137 (854)
                      +++|+|||++|.+++        .++|+.++|++||++++.|   .|+|+|+|... .+.|+++|+||++.++++|++.|
T Consensus       101 ~i~lkVNg~~v~lp~~~p~~k~g~~~kr~~~PidIT~~lr~~~~~~N~I~vt~~~~~~~~y~l~V~lV~~~s~~~Llq~l  180 (360)
T 4fo9_A          101 SLCIKVNGKLFPLPGYAPPPKNGIEQKRPGRPLNITSLVRLSSAVPNQISISWASEIGKNYSMSVYLVRQLTSAMLLQRL  180 (360)
T ss_dssp             TCEEEETTEEECCCC--------CCCCCBCCCEECGGGSCCCSSSCEEEEEEEECBTTBCEEEEEEEEEECCHHHHHHHH
T ss_pred             ceEEEECCEEccCCCCCCCcccccccCCCCCceechhhhccCCCCCcEEEEEEecCCCceEEEEEEEEEeCCHHHHHHHH
Confidence            999999999998753        3567889999999999987   59999999864 57889999999999999999999


Q ss_pred             HhhccccHHHHHHHHHHHhcCCCCCCCCCCCceeeeeeEEeecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCe
Q psy14745        138 LRKRLLTADHCIAKIKRNFNNSNSSSMSSSDSIEQTALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGS  217 (854)
Q Consensus       138 lkkRlLpaEe~IakIKr~L~~s~SssddDDDDIe~tsl~ISLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~t  217 (854)
                      ++++.+++++++++||+++..      ++||||+++.++|||+||||++||++||||+.|+|+|||||++||++++++++
T Consensus       181 ~~k~~~~~e~t~~~Ik~~l~~------d~DddI~~~~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~  254 (360)
T 4fo9_A          181 KMKGIRNPDHSRALIKEKLTA------DPDSEIATTSLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPT  254 (360)
T ss_dssp             HTC-CBCHHHHHHHHHHHHC---------------CCEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCC
T ss_pred             HhcCCCCHHHHHHHHHHHhcc------CCccceeeeeeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCC
Confidence            998899999999999999853      35667989999999999999999999999999999999999999999999999


Q ss_pred             eecCCCCCCCCCCCeeehHhHHHHHhhcCCCCceEEEEcCCCcEeeCCCCcc
Q psy14745        218 WRCPVCNKPAQLEGLEVDQYMWGILNTLNNSEVEEVTIDATANWRVPRGMHV  269 (854)
Q Consensus       218 WkCPIC~K~a~~edLiID~yL~eILk~L~~sdVeeV~Vd~DGSWrp~~~~~~  269 (854)
                      |+||||+|.+++++|+||+||++||+.+  .++++|+|++||+|++....++
T Consensus       255 W~CPiC~k~~~~~dL~ID~~~~~IL~~~--~~v~~I~v~~DGsW~p~~~k~e  304 (360)
T 4fo9_A          255 WICPVCDKKAAYESLILDGLFMEILNDC--SDVDEIKFQEDGSWCPMRPKKE  304 (360)
T ss_dssp             CBCTTTCSBCCGGGEEEBHHHHHHHTTC--SSCCEEEECC-CCEEC------
T ss_pred             eECCCCCcccCHHHeEEcHHHHHHHHhC--CCCCEEEECCCCceecCCCCcc
Confidence            9999999999999999999999999987  4899999999999999865443
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 854
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 1e-04
d1chca_68 g.44.1.1 (A:) Immediate early protein, IEEHV {Equi 0.001
d1jm7b_97 g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie 0.001
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 166 SSDSIEQT-----ALKVSLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRC 220
           S+  +E+      A++  L+CPI  + I  P     C HI C        LN ++G  +C
Sbjct: 4   SALRVEEVQNVINAMQKILECPICLELIKEPVS-TKCDHIFCKF-CMLKLLNQKKGPSQC 61

Query: 221 PVCNKPAQLEGLEVDQYMWGILNTL 245
           P+C        L+       ++  L
Sbjct: 62  PLCKNDITKRSLQESTRFSQLVEEL 86
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68 Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query854
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 97.44
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 97.32
d2c2la280 STIP1 homology and U box-containing protein 1, STU 96.88
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 96.83
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 96.71
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 96.48
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 93.72
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 93.23
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 87.8
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 80.44
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=5.9e-05  Score=65.40  Aligned_cols=64  Identities=9%  Similarity=0.065  Sum_probs=55.7

Q ss_pred             eecCCcccccccccCCCCCcCccccccHHHHHHHhcCCCeeecCCCCCCCCCCCeeehHhHHHHHhhc
Q psy14745        178 SLKCPITFKKITLPARGHDCKHIQCFDLESYLQLNCERGSWRCPVCNKPAQLEGLEVDQYMWGILNTL  245 (854)
Q Consensus       178 SLkCPLS~~RIkiPVRG~~CkHLQCFDLeSFLq~n~qk~tWkCPIC~K~a~~edLiID~yL~eILk~L  245 (854)
                      .|+|||++..|+-||....|.|.  ||-..+.....+..  .||+|++.+..++|+.+.-|.+.+++.
T Consensus        22 ~f~CPI~~~lm~dPV~~~~~~~t--y~r~~I~~~l~~~~--~~P~~~~~l~~~~L~pN~~Lr~~I~~~   85 (98)
T d1wgma_          22 EFLDPIMSTLMCDPVVLPSSRVT--VDRSTIARHLLSDQ--TDPFNRSPLTMDQIRPNTELKEKIQRW   85 (98)
T ss_dssp             TTBCTTTCSBCSSEEECTTTCCE--EEHHHHHHHTTTSC--BCTTTCSBCCTTTSEECHHHHHHHHHH
T ss_pred             HhCCcCchhHHHHHHhcccccch--hhHHHHHHHHHhcC--CcccccccccchhhcchHHHHHHHHHH
Confidence            59999999999999999988885  99888887665543  799999999999999999999888764
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure