Psyllid ID: psy14770

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MSDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWYKGTRKVGFLLSF
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHcccHHHHHHHHHHHHcccccEEEEEEcc
Coil and Loop (DISEMBL)
MSDDERDYDIESAEKRAHHNALERKRRDHIKDSFSslrdsvpslqgekvevpgshvdtldqgfwykgtrkvgfllsf
Flexible Loop (DISEMBL)
msdderdydiesaekrahhnalerkrrdhikdsfsslrdsvpslqgekvevpgshvdtldqgfwykgtrkVGFLLSF
Low Complexity Region (SEG)
MSDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWYKGTRKVGFLLSF
Disordered region (IsUnstruct)
******************************************************HVDTLDQGFWYKGTRKVGFLL**
Disordered Region (DISOPRED)
********************ALERKRRDHIKDSFSSLRDSVPSLQG**********DTLDQGFWYKGTRKVGFLLSF
Disordered Region (DISEMBL)
**********ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWYKGTRKVGFLLSF
Disordered Region (DISPRO)
***********************RKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWYKGTRKVGFLLSF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWYKGTRKVGFLLSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
P52162	160	Protein max OS=Gallus gal	yes	N/A	0.779	0.375	0.640	7e-14
P61244	160	Protein max OS=Homo sapie	no	N/A	0.779	0.375	0.640	7e-14
P61245	160	Protein max OS=Felis catu	N/A	N/A	0.779	0.375	0.640	7e-14
P52164	160	Protein max OS=Rattus nor	yes	N/A	0.779	0.375	0.640	7e-14
P28574	160	Protein max OS=Mus muscul	no	N/A	0.779	0.375	0.640	7e-14
P52161	165	Protein max OS=Danio reri	yes	N/A	0.688	0.321	0.685	3e-13
Q07016	163	Protein max OS=Xenopus la	N/A	N/A	0.649	0.306	0.703	3e-13
P91664	161	Protein max OS=Drosophila	yes	N/A	0.636	0.304	0.527	8e-13
P24793	437	N-myc protein OS=Xenopus	N/A	N/A	0.558	0.098	0.511	2e-06
P03966	462	N-myc proto-oncogene prot	no	N/A	0.506	0.084	0.512	4e-05

>sp|P52162|MAX_CHICK Protein max OS=Gallus gallus GN=MAX PE=3 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 2  SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
          SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+
Sbjct: 11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDK 66

Query: 62 GFWY 65
             Y
Sbjct: 67 ATEY 70

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor.
Gallus gallus (taxid: 9031)

>sp|P61244|MAX_HUMAN Protein max OS=Homo sapiens GN=MAX PE=1 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 2  SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
          SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+
Sbjct: 11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDK 66

Query: 62 GFWY 65
             Y
Sbjct: 67 ATEY 70

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor. May repress transcription via the recruitment of a chromatin remodeling complex containing H3 'Lys-9' histone methyltransferase activity.

Homo sapiens (taxid: 9606)

>sp|P61245|MAX_FELCA Protein max OS=Felis catus GN=MAX PE=2 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 2  SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
          SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+
Sbjct: 11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDK 66

Query: 62 GFWY 65
             Y
Sbjct: 67 ATEY 70

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor. May repress transcription via the recruitment of a chromatin remodeling complex containing H3 'Lys-9' histone methyltransferase activity.

Felis catus (taxid: 9685)

>sp|P52164|MAX_RAT Protein max OS=Rattus norvegicus GN=Max PE=1 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 2  SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
          SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+
Sbjct: 11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDK 66

Query: 62 GFWY 65
             Y
Sbjct: 67 ATEY 70

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor. May repress transcription via the recruitment of a chromatin remodeling complex containing H3 'Lys-9' histone methyltransferase activity.

Rattus norvegicus (taxid: 10116)

>sp|P28574|MAX_MOUSE Protein max OS=Mus musculus GN=Max PE=1 SV=1

 Score = 75.9 bits (185), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 2  SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
          SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+
Sbjct: 11 SDEEQARFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDK 66

Query: 62 GFWY 65
             Y
Sbjct: 67 ATEY 70

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor. CpG methylation of the recognition site greatly inhibits DNA binding, suggesting that DNA methylation may regulate the MYC/MAX complex in vivo. May repress transcription via the recruitment of a chromatin remodeling complex containing H3 'Lys-9' histone methyltransferase activity.

Mus musculus (taxid: 10090)

>sp|P52161|MAX_DANRE Protein max OS=Danio rerio GN=max PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/54 (68%), Positives = 41/54 (75%), Gaps = 1/54 (1%)

Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVP-GSHVDTLDQGFWY 65
          A+KRAHHNALERKRRDHIKDSF SLRDSVP+LQGEK  +   S    LD+   Y
Sbjct: 22 ADKRAHHNALERKRRDHIKDSFHSLRDSVPALQGEKQSIKQASRAQILDKATEY 75

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor.

Danio rerio (taxid: 7955)

>sp|Q07016|MAX_XENLA Protein max OS=Xenopus laevis GN=max PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/54 (70%), Positives = 40/54 (74%), Gaps = 4/54 (7%)

Query: 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWY 65
          SA+KRAHHNALERKRRDHIKDSF  LRDSVPSLQGEK     S    LD+   Y
Sbjct: 21 SADKRAHHNALERKRRDHIKDSFHGLRDSVPSLQGEK----ASRAQILDKATEY 70

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor.

Xenopus laevis (taxid: 8355)

>sp|P91664|MAX_DROME Protein max OS=Drosophila melanogaster GN=Max PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/72 (52%), Positives = 47/72 (65%), Gaps = 23/72 (31%)

Query: 1  MSDDERDYDIES-----------------------AEKRAHHNALERKRRDHIKDSFSSL 37
          MSDD+RD DIES                       AEKRAHHNALER+RRDHIK+SF++L
Sbjct: 3  MSDDDRDIDIESDEDGDSDTGLGSSRHTNTANFTQAEKRAHHNALERRRRDHIKESFTNL 62

Query: 38 RDSVPSLQGEKV 49
          R++VP+L+GEK 
Sbjct: 63 REAVPTLKGEKA 74

Transcription regulator. Forms a sequence-specific DNA-binding protein complex with MYC or MAD which recognizes the core sequence 5'-CAC[GA]TG-3'. The MYC-MAX complex is a transcriptional activator, whereas the MAD-MAX complex is a repressor.

Drosophila melanogaster (taxid: 7227)

>sp|P24793|MYCN_XENLA N-myc protein OS=Xenopus laevis GN=mycn PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 31/43 (72%)

Query: 2   SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSL 44
           S   R+YD E +E+R +HN LER+RR+ ++ SF +LRD VP L
Sbjct: 342 SSSPRNYDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPEL 384

May be involved in CNS maturation.

Xenopus laevis (taxid: 8355)

>sp|P03966|MYCN_MOUSE N-myc proto-oncogene protein OS=Mus musculus GN=Mycn PE=2 SV=2

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 29/39 (74%)

Query: 6   RDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSL 44
           R+ D E +E+R +HN LER+RR+ ++ SF +LRD VP L
Sbjct: 371 RNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPEL 409

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
240849031	141	bhlhzip transcription factor max/bigmax-	0.636	0.347	0.877	3e-17
312385888	179	hypothetical protein AND_00219 [Anophele	0.636	0.273	0.9	3e-16
260836929	115	hypothetical protein BRAFLDRAFT_188887 [	0.805	0.539	0.651	8e-15
443684885	161	hypothetical protein CAPTEDRAFT_118760 [	0.844	0.403	0.562	1e-14
383861970	171	PREDICTED: protein max-like [Megachile r	0.636	0.286	0.657	1e-14
350421414	171	PREDICTED: protein max-like [Bombus impa	0.636	0.286	0.657	2e-14
340726942	171	PREDICTED: protein max-like isoform 1 [B	0.636	0.286	0.657	2e-14
340726944	161	PREDICTED: protein max-like isoform 2 [B	0.636	0.304	0.657	2e-14
209154632	156	max [Salmo salar]	0.831	0.410	0.686	3e-14
380018849	171	PREDICTED: protein max-like isoform 1 [A	0.636	0.286	0.657	4e-14

>gi|240849031|ref|NP_001155631.1| bhlhzip transcription factor max/bigmax-like [Acyrthosiphon pisum] gi|239790453|dbj|BAH71787.1| ACYPI005523 [Acyrthosiphon pisum]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/49 (87%), Positives = 48/49 (97%)

Query: 1  MSDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKV 49
          MSDD+RD ++E+AEKRAHHNALERKRRDHIKDSF+SLRDSVPSLQGEKV
Sbjct: 1  MSDDDRDVELETAEKRAHHNALERKRRDHIKDSFTSLRDSVPSLQGEKV 49

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385888|gb|EFR30280.1| hypothetical protein AND_00219 [Anopheles darlingi]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/50 (90%), Positives = 47/50 (94%), Gaps = 1/50 (2%)

Query: 1  MSDDERDYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKV 49
          MSDD+RD DIES AEKRAHHNALERKRRDHIKDSF+SLRDSVPSLQGEK 
Sbjct: 21 MSDDDRDIDIESDAEKRAHHNALERKRRDHIKDSFTSLRDSVPSLQGEKA 70

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260836929|ref|XP_002613458.1| hypothetical protein BRAFLDRAFT_188887 [Branchiostoma floridae] gi|229298843|gb|EEN69467.1| hypothetical protein BRAFLDRAFT_188887 [Branchiostoma floridae]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 52/66 (78%), Gaps = 4/66 (6%)

Query: 1  MSDDERDYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTL 59
          MSDDERD D++S A+KRAHHNALER+RRDHIK+SFSSLRD+VP+LQGEK     S    L
Sbjct: 1  MSDDERDLDVDSDADKRAHHNALERQRRDHIKNSFSSLRDAVPALQGEK---QASRAQIL 57

Query: 60 DQGFWY 65
          ++   Y
Sbjct: 58 NKATDY 63

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|443684885|gb|ELT88674.1| hypothetical protein CAPTEDRAFT_118760 [Capitella teleta]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/80 (56%), Positives = 51/80 (63%), Gaps = 15/80 (18%)

Query: 1  MSDDERDYDIES---------------AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ 45
          MSD++RD DIES               AEKRAHHNALERKRRDHIK+SF +LRDS+PS+Q
Sbjct: 1  MSDEDRDIDIESDDDVDEEANTQFMTQAEKRAHHNALERKRRDHIKESFHNLRDSIPSVQ 60

Query: 46 GEKVEVPGSHVDTLDQGFWY 65
          GEKV    S    L Q   Y
Sbjct: 61 GEKVGSKASRAQILKQATDY 80

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|383861970|ref|XP_003706457.1| PREDICTED: protein max-like [Megachile rotundata]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 48/70 (68%), Gaps = 21/70 (30%)

Query: 1  MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
          MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1  MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40 SVPSLQGEKV 49
          SVP+LQGEKV
Sbjct: 61 SVPALQGEKV 70

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350421414|ref|XP_003492834.1| PREDICTED: protein max-like [Bombus impatiens]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 48/70 (68%), Gaps = 21/70 (30%)

Query: 1  MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
          MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1  MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40 SVPSLQGEKV 49
          SVP+LQGEKV
Sbjct: 61 SVPALQGEKV 70

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726942|ref|XP_003401810.1| PREDICTED: protein max-like isoform 1 [Bombus terrestris]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 48/70 (68%), Gaps = 21/70 (30%)

Query: 1  MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
          MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1  MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40 SVPSLQGEKV 49
          SVP+LQGEKV
Sbjct: 61 SVPALQGEKV 70

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726944|ref|XP_003401811.1| PREDICTED: protein max-like isoform 2 [Bombus terrestris]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 48/70 (68%), Gaps = 21/70 (30%)

Query: 1  MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
          MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1  MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40 SVPSLQGEKV 49
          SVP+LQGEKV
Sbjct: 61 SVPALQGEKV 70

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209154632|gb|ACI33548.1| max [Salmo salar]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 52/67 (77%), Gaps = 3/67 (4%)

Query: 1  MSDDERDYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVP-GSHVDT 58
          MSD+E D D++S A+KRAHHNALERKRRDHIKDSFSSLRDSVP+LQGEK  V   S    
Sbjct: 1  MSDNE-DIDVDSDADKRAHHNALERKRRDHIKDSFSSLRDSVPALQGEKQSVKQASRAQI 59

Query: 59 LDQGFWY 65
          LD+   Y
Sbjct: 60 LDKATDY 66

Source: Salmo salar

Species: Salmo salar

Genus: Salmo

Family: Salmonidae

Order: Salmoniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380018849|ref|XP_003693333.1| PREDICTED: protein max-like isoform 1 [Apis florea]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/70 (65%), Positives = 47/70 (67%), Gaps = 21/70 (30%)

Query: 1  MSDDERDYDIES---------------------AEKRAHHNALERKRRDHIKDSFSSLRD 39
          MSDD+RD DIES                     AEKRAHHNALERKRRDHIKDSFSSLRD
Sbjct: 1  MSDDDRDIDIESDEGDDSDSRQRHSNNTQYYSQAEKRAHHNALERKRRDHIKDSFSSLRD 60

Query: 40 SVPSLQGEKV 49
          SVP LQGEKV
Sbjct: 61 SVPVLQGEKV 70

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
FB|FBgn0017578	161	Max "Max" [Drosophila melanoga	0.467	0.223	0.777	6.6e-16
UNIPROTKB|G3V2R5	125	MAX "Protein max" [Homo sapien	0.779	0.48	0.666	1.3e-15
UNIPROTKB|G3V563	121	MAX "Protein max" [Homo sapien	0.779	0.495	0.666	1.3e-15
UNIPROTKB|Q6V3B1	94	MAX "MAX protein" [Homo sapien	0.779	0.638	0.666	1.3e-15
UNIPROTKB|F2Z5K0	151	MAX "Uncharacterized protein"	0.779	0.397	0.666	1.3e-15
UNIPROTKB|A8E4Q8	162	MAX "MAX protein" [Bos taurus	0.805	0.382	0.640	4.2e-15
UNIPROTKB|P52162	160	MAX "Protein max" [Gallus gall	0.779	0.375	0.640	1.1e-14
UNIPROTKB|E2QZS2	160	MAX "Uncharacterized protein"	0.779	0.375	0.640	1.1e-14
UNIPROTKB|P61244	160	MAX "Protein max" [Homo sapien	0.779	0.375	0.640	1.1e-14
UNIPROTKB|P61245	160	MAX "Protein max" [Felis catus	0.779	0.375	0.640	1.1e-14

FB|FBgn0017578 Max "Max" [Drosophila melanogaster (taxid:7227)]

 Score = 157 (60.3 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
 Identities = 28/36 (77%), Positives = 36/36 (100%)

Query:    13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
             AEKRAHHNALER+RRDHIK+SF++LR++VP+L+GEK
Sbjct:    38 AEKRAHHNALERRRRDHIKESFTNLREAVPTLKGEK 73

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=IC;ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

UNIPROTKB|G3V2R5 MAX "Protein max" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 44/66 (66%), Positives = 50/66 (75%)

Query:     1 MSDDERDYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTL 59
             MSD++ D ++ES A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    L
Sbjct:     1 MSDND-DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA----SRAQIL 55

Query:    60 DQGFWY 65
             D+   Y
Sbjct:    56 DKATEY 61

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|G3V563 MAX "Protein max" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 44/66 (66%), Positives = 50/66 (75%)

Query:     1 MSDDERDYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTL 59
             MSD++ D ++ES A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    L
Sbjct:     1 MSDND-DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA----SRAQIL 55

Query:    60 DQGFWY 65
             D+   Y
Sbjct:    56 DKATEY 61

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|Q6V3B1 MAX "MAX protein" [Homo sapiens (taxid:9606)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 44/66 (66%), Positives = 50/66 (75%)

Query:     1 MSDDERDYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTL 59
             MSD++ D ++ES A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    L
Sbjct:     1 MSDND-DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA----SRAQIL 55

Query:    60 DQGFWY 65
             D+   Y
Sbjct:    56 DKATEY 61

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|F2Z5K0 MAX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 44/66 (66%), Positives = 50/66 (75%)

Query:     1 MSDDERDYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTL 59
             MSD++ D ++ES A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    L
Sbjct:     1 MSDND-DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA----SRAQIL 55

Query:    60 DQGFWY 65
             D+   Y
Sbjct:    56 DKATEY 61

GO:0071339 "MLL1 complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|A8E4Q8 MAX "MAX protein" [Bos taurus (taxid:9913)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 41/64 (64%), Positives = 47/64 (73%)

Query:     2 SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
             SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK +   S    LD+
Sbjct:    11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKQQA--SRAQILDK 68

Query:    62 GFWY 65
                Y
Sbjct:    69 ATEY 72

GO:0071339 "MLL1 complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|P52162 MAX "Protein max" [Gallus gallus (taxid:9031)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/64 (64%), Positives = 46/64 (71%)

Query:     2 SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
             SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+
Sbjct:    11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA----SRAQILDK 66

Query:    62 GFWY 65
                Y
Sbjct:    67 ATEY 70

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0071339 "MLL1 complex" evidence=ISS

UNIPROTKB|E2QZS2 MAX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/64 (64%), Positives = 46/64 (71%)

Query:     2 SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
             SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+
Sbjct:    11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA----SRAQILDK 66

Query:    62 GFWY 65
                Y
Sbjct:    67 ATEY 70

GO:0071339 "MLL1 complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

UNIPROTKB|P61244 MAX "Protein max" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/64 (64%), Positives = 46/64 (71%)

Query:     2 SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
             SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+
Sbjct:    11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA----SRAQILDK 66

Query:    62 GFWY 65
                Y
Sbjct:    67 ATEY 70

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0010629 "negative regulation of gene expression" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032868 "response to insulin stimulus" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048678 "response to axon injury" evidence=IEA

GO:0051402 "neuron apoptotic process" evidence=IEA

GO:0060041 "retina development in camera-type eye" evidence=IEA

GO:0071375 "cellular response to peptide hormone stimulus" evidence=IEA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0003712 "transcription cofactor activity" evidence=TAS

GO:0003713 "transcription coactivator activity" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P61245 MAX "Protein max" [Felis catus (taxid:9685)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/64 (64%), Positives = 46/64 (71%)

Query:     2 SDDERDYDIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
             SD+E+     +A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+
Sbjct:    11 SDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKA----SRAQILDK 66

Query:    62 GFWY 65
                Y
Sbjct:    67 ATEY 70

GO:0071339 "MLL1 complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52162	MAX_CHICK	No assigned EC number	0.6406	0.7792	0.375	yes	N/A
P52161	MAX_DANRE	No assigned EC number	0.6851	0.6883	0.3212	yes	N/A
P52164	MAX_RAT	No assigned EC number	0.6406	0.7792	0.375	yes	N/A
P91664	MAX_DROME	No assigned EC number	0.5277	0.6363	0.3043	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	77
pfam00010	52	pfam00010, HLH, Helix-loop-helix DNA-binding domai	1e-11
cd00083	60	cd00083, HLH, Helix-loop-helix domain, found in sp	5e-09
smart00353	53	smart00353, HLH, helix loop helix domain	4e-05

>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain

 Score = 53.6 bits (130), Expect = 1e-11
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
          +R  HN  ER+RRD I D+F  LR+ +P+   +K+    S  + L  
Sbjct: 1  RRKAHNERERRRRDRINDAFEELRELLPTPPNKKL----SKAEILRL 43

Length = 52

>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

 Score = 46.8 bits (112), Expect = 5e-09
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
             +R  HN  ER+RR+ I D+F  LR  +P+L   K
Sbjct: 1  RKSRREAHNLRERRRRERINDAFDELRSLLPTLPPSK 37

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and have a PAS domain which allows the dimerization between PAS proteins, the binding of small molecules (e.g., dioxin), and interactions with non-PAS proteins. Length = 60

>gnl|CDD|197674 smart00353, HLH, helix loop helix domain

 Score = 36.8 bits (86), Expect = 4e-05
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 20 NALERKRRDHIKDSFSSLRDSVPSLQGEK 48
          NA ER+RR  I ++F  LR  +P+L   K
Sbjct: 1  NARERRRRRKINEAFDELRSLLPTLPKNK 29

Length = 53

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	77
1hlo_A	80	The Crystal Structure Of An Intact Human Max-Dna Co		1e-14
1an2_A	86	Recognition By Max Of Its Cognate Dna Through A Dim		2e-14
1r05_A	87	Solution Structure Of Max B-Hlh-Lz Length = 87		3e-14
1nlw_B	76	Crystal Structure Of Mad-Max Recognizing Dna Length		1e-13
1nkp_B	83	Crystal Structure Of Myc-Max Recognizing Dna Length		1e-13
1nkp_A	88	Crystal Structure Of Myc-Max Recognizing Dna Length		3e-04

>pdb|1HLO|A Chain A, The Crystal Structure Of An Intact Human Max-Dna Complex: New Insights Into Mechanisms Of Transcriptional Control Length = 80

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 45/60 (75%), Gaps = 5/60 (8%)
Query: 7  DYDIES-AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWY 65
          D ++ES A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+   Y
Sbjct: 3  DIEVESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDKATEY 58

>pdb|1AN2|A Chain A, Recognition By Max Of Its Cognate Dna Through A Dimeric BHLHZ DOMAIN Length = 86

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 40/53 (75%), Gaps = 4/53 (7%)
Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWY 65
          A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+   Y
Sbjct: 1  ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDKATEY 49

>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz Length = 87

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 40/53 (75%), Gaps = 4/53 (7%)
Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWY 65
          A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+   Y
Sbjct: 2  ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDKATEY 50

>pdb|1NLW|B Chain B, Crystal Structure Of Mad-Max Recognizing Dna Length = 76

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 38/51 (74%), Gaps = 4/51 (7%)
Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWY 65
          KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+   Y
Sbjct: 1  KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDKATEY 47

>pdb|1NKP|B Chain B, Crystal Structure Of Myc-Max Recognizing Dna Length = 83

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 39/52 (75%), Gaps = 4/52 (7%)
Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWY 65
          +KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK     S    LD+   Y
Sbjct: 1  DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK----ASRAQILDKATEY 48

>pdb|1NKP|A Chain A, Crystal Structure Of Myc-Max Recognizing Dna Length = 88

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQG 46
          KR  HN LER+RR+ +K SF +LRD +P L+ 
Sbjct: 6  KRRTHNVLERQRRNELKRSFFALRDQIPELEN 37

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	77
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	1e-14
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	2e-14
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	6e-13
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	4e-11
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	2e-10
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	2e-10
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	2e-06

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83

 Score = 61.6 bits (150), Expect = 1e-14
 Identities = 33/35 (94%), Positives = 34/35 (97%)

Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
          +KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK
Sbjct: 1  DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK 35

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 60.8 bits (148), Expect = 2e-14
 Identities = 34/36 (94%), Positives = 35/36 (97%)

Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
          A+KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK
Sbjct: 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK 45

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88

 Score = 57.0 bits (138), Expect = 6e-13
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ 45
              KR  HN LER+RR+ +K SF +LRD +P L+
Sbjct: 2  HMNVKRRTHNVLERQRRNELKRSFFALRDQIPELE 36

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 52.4 bits (126), Expect = 4e-11
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
           EKR  HNA+E++ R  I D    L+D V   + + 
Sbjct: 4  GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKL 39

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80

 Score = 50.6 bits (121), Expect = 2e-10
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 16 RAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
          R+ HN +E+ RR H++ S   L+  VP      
Sbjct: 2  RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSS 34

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65

 Score = 50.4 bits (121), Expect = 2e-10
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVE 50
          ++RA HN +ER+RRD I +    L   +P    E  +
Sbjct: 4  KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTK 40

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76

 Score = 40.3 bits (94), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 12 SAEKRAHHNALERKRRDHIKDSFSSL-RDSVPSLQGEKVEVPGSHVDTLDQGFWY 65
           A+KRAHHNALERKRR  I ++F  L R     L+ +K     + +  L Q    
Sbjct: 2  GADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDK---AQTKLLILQQAVQV 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	77
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	99.68
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	99.67
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	99.58
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	99.58
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	99.55
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	99.49
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	99.46
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	99.45
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.4
4h10_B	71	Circadian locomoter output cycles protein kaput; B	99.4
1a0a_A	63	BHLH, protein (phosphate system positive regulator	99.34
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	99.32
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	99.28
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.78
2lfh_A	68	DNA-binding protein inhibitor ID-3; structural gen	98.65
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	98.55
4aya_A	97	DNA-binding protein inhibitor ID-2; cell cycle; 2.	97.99
4ath_A	83	MITF, microphthalmia-associated transcription fact	97.76
3muj_A	138	Transcription factor COE3; immunoglobulin like fol	83.44

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=99.68  E-value=5.4e-17  Score=102.02  Aligned_cols=51  Identities=22%  Similarity=0.251  Sum_probs=45.0

Q ss_pred             HHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhhhhhhhhhe
Q psy14770         15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQGFWYKGTR   69 (77)
Q Consensus        15 kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~~~~~~~~~   69 (77)
                      +|.+||.+||+||++||+||+.|++.||.+. +.|+||+.||.+|++    ||.++
T Consensus         1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~----yI~~L   52 (80)
T 1nlw_A            1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKL----HIKKL   52 (80)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHH----HHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH----HHHHH
Confidence            4899999999999999999999999999995 689999999888776    55543

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.67  E-value=4.9e-17  Score=103.52  Aligned_cols=52  Identities=37%  Similarity=0.455  Sum_probs=47.6

Q ss_pred             cccHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhh
Q psy14770         10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQ   61 (77)
Q Consensus        10 ~e~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~   61 (77)
                      +|+.++|.+||.+||+||+.|+.+|+.|++.||++. +.|.||+.||.+|++|
T Consensus         1 ~ed~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~Y   53 (88)
T 1nkp_A            1 GHMNVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAY   53 (88)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHH
T ss_pred             CCChhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Confidence            367889999999999999999999999999999996 6899999999888764

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=99.58  E-value=2.2e-15  Score=93.51  Aligned_cols=53  Identities=64%  Similarity=0.795  Sum_probs=48.4

Q ss_pred             cccHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhhh
Q psy14770         10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQG   62 (77)
Q Consensus        10 ~e~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~~   62 (77)
                      .++..+|.+||..||+||..|+.+|+.|+..||.+.+.|.||+.||.+|++|-
T Consensus         7 ~~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI   59 (80)
T 1hlo_A            7 ESDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYI   59 (80)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHH
T ss_pred             cchHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999998887743

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=99.58  E-value=4.7e-16  Score=97.24  Aligned_cols=50  Identities=38%  Similarity=0.502  Sum_probs=38.7

Q ss_pred             cHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCC-CCCCCc-chhHHHHHhhhh
Q psy14770         12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPS-LQGEKV-EVPGSHVDTLDQ   61 (77)
Q Consensus        12 ~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~-l~~~Ka-Sk~~IL~ktld~   61 (77)
                      +.++|.+||+.||+||..|+.+|+.|++.||. ..++|+ ||+.||.+|++|
T Consensus         2 ~~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieY   53 (76)
T 3u5v_A            2 GADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQV   53 (76)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_pred             chhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHH
Confidence            46799999999999999999999999999995 567887 899998877763

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=99.55  E-value=4.2e-15  Score=92.52  Aligned_cols=49  Identities=67%  Similarity=0.857  Sum_probs=45.4

Q ss_pred             HHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhhh
Q psy14770         14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQG   62 (77)
Q Consensus        14 ~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~~   62 (77)
                      ++|.+||..||+||+.|+.+|+.|++.||++.+.|.||+.||.+|++|-
T Consensus         1 ~rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI   49 (83)
T 1nkp_B            1 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYI   49 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHH
T ss_pred             ChhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Confidence            3799999999999999999999999999999999999999998888743

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=99.49  E-value=4.1e-15  Score=88.92  Aligned_cols=49  Identities=29%  Similarity=0.410  Sum_probs=43.6

Q ss_pred             HHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCC----CCcchhHHHHHhhhh
Q psy14770         13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG----EKVEVPGSHVDTLDQ   61 (77)
Q Consensus        13 ~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~----~KaSk~~IL~ktld~   61 (77)
                      ..+|.+||.+||+||+.|+.+|..|+.+||.+..    .|.+|+.||.+|++|
T Consensus         3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~Y   55 (65)
T 1an4_A            3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDY   55 (65)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHH
T ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHH
Confidence            4578999999999999999999999999999975    388999998877764

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=99.46  E-value=1.1e-13  Score=86.62  Aligned_cols=51  Identities=29%  Similarity=0.370  Sum_probs=45.5

Q ss_pred             cHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhhhh
Q psy14770         12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGF   63 (77)
Q Consensus        12 ~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~~~   63 (77)
                      +..+|.+||..||+||+.|+.+|..|++.||+. +.|.+|+.||.+|++|--
T Consensus         3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~-~~k~~Ka~IL~~Ai~YI~   53 (82)
T 1am9_A            3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYIR   53 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCC-CCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999999999985 579999999988887543

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=99.45  E-value=1.6e-13  Score=84.27  Aligned_cols=54  Identities=19%  Similarity=0.316  Sum_probs=47.2

Q ss_pred             cHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhhhhhhhhhe
Q psy14770         12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQGFWYKGTR   69 (77)
Q Consensus        12 ~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~~~~~~~~~   69 (77)
                      +..+|..||+.||+|+..|+.+|+.|++.||...+.|.||+.||..|++    ||..+
T Consensus         9 ~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~----YI~~L   62 (68)
T 1mdy_A            9 NADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIR----YIEGL   62 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHH----HHHHH
T ss_pred             chhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHH----HHHHH
Confidence            4678999999999999999999999999999988899999987777665    66544

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.40  E-value=2.6e-13  Score=90.16  Aligned_cols=53  Identities=23%  Similarity=0.263  Sum_probs=40.2

Q ss_pred             cHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCC--CCcchhHHHHHhhhhhhh
Q psy14770         12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG--EKVEVPGSHVDTLDQGFW   64 (77)
Q Consensus        12 ~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~--~KaSk~~IL~ktld~~~~   64 (77)
                      +..+|.+||.+||+||+.|+.+|..|++.||++.+  .|.+|+.||.+|++|--+
T Consensus        24 ~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~   78 (118)
T 4ati_A           24 ERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRK   78 (118)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999974  599999999888875433

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.40  E-value=6.6e-13  Score=82.42  Aligned_cols=52  Identities=25%  Similarity=0.336  Sum_probs=45.2

Q ss_pred             ccccHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhh
Q psy14770          9 DIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ   61 (77)
Q Consensus         9 ~~e~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~   61 (77)
                      |..+..+|.+||.+||+||+.|+.+|.+|+..||+. +.|.+|+.||++||+|
T Consensus         2 d~k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~-~~K~dK~sIL~~aI~y   53 (71)
T 4h10_B            2 DDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGN-ARKMDKSTVLQKSIDF   53 (71)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSC-CSCCCHHHHHHHHHHH
T ss_pred             ChhhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCC-CCCCcHHHHHHHHHHH
Confidence            455678999999999999999999999999999952 4699999999999874

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=99.34  E-value=1.9e-13  Score=82.42  Aligned_cols=51  Identities=18%  Similarity=0.226  Sum_probs=43.9

Q ss_pred             HHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC-----CCCcchhHHHHHhhhhhhhhhhhe
Q psy14770         15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-----GEKVEVPGSHVDTLDQGFWYKGTR   69 (77)
Q Consensus        15 kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~-----~~KaSk~~IL~ktld~~~~~~~~~   69 (77)
                      +|.+|+..||+||+-|+.+|.+|+.+||++.     +.+.||+.||+.|++    ||.++
T Consensus         2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~----YIk~L   57 (63)
T 1a0a_A            2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACR----YIRHL   57 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHH----HHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHH----HHHHH
Confidence            5789999999999999999999999999873     368999988877765    66655

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=99.32  E-value=3.7e-12  Score=76.33  Aligned_cols=52  Identities=23%  Similarity=0.285  Sum_probs=44.6

Q ss_pred             HHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhhhhhhhhhe
Q psy14770         14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQGFWYKGTR   69 (77)
Q Consensus        14 ~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~~~~~~~~~   69 (77)
                      ++|..||+.||+|+..|+.+|+.|++.||.+. +.|.||+.+|..|++    ||..+
T Consensus         1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~----YI~~L   53 (60)
T 2ql2_B            1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKN----YIWAL   53 (60)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHH----HHHHH
T ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHH----HHHHH
Confidence            37899999999999999999999999999997 589999977766665    66544

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=99.28  E-value=2.8e-12  Score=79.57  Aligned_cols=55  Identities=20%  Similarity=0.297  Sum_probs=48.3

Q ss_pred             cHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC--CCCcchhHHHHHhhhhhhhhhhhee
Q psy14770         12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ--GEKVEVPGSHVDTLDQGFWYKGTRK   70 (77)
Q Consensus        12 ~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~--~~KaSk~~IL~ktld~~~~~~~~~~   70 (77)
                      -..+|.+||.+||+||+.|+.+|.+|+..||.+.  ..|..|+.||+.|++    |+.+++
T Consensus         6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~----ylk~l~   62 (73)
T 4h10_A            6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQ----HMKTLR   62 (73)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHH----HHHHHS
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHH----HHHHHh
Confidence            3568999999999999999999999999999985  369999999988876    666665

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.78  E-value=5.4e-09  Score=76.83  Aligned_cols=52  Identities=25%  Similarity=0.360  Sum_probs=35.7

Q ss_pred             ccccHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhh
Q psy14770          9 DIESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ   61 (77)
Q Consensus         9 ~~e~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~   61 (77)
                      +..+..+|..||..||+||+.|+..|.+|+..||. ...|..|+.||+.||+|
T Consensus         6 ~~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~-~~~~~dk~~il~~~~~~   57 (361)
T 4f3l_A            6 DDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPG-NARKMDKSTVLQKSIDF   57 (361)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHTCCS-SSCCCCHHHHHHHHHHH
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCC-CCCCcCHHHHHHHHHHH
Confidence            33456799999999999999999999999999992 34699999999999985

>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.65  E-value=9e-09  Score=63.68  Aligned_cols=46  Identities=20%  Similarity=0.257  Sum_probs=37.8

Q ss_pred             HHHHHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhhhhhhhhhe
Q psy14770         20 NALERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQGFWYKGTR   69 (77)
Q Consensus        20 N~lERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~~~~~~~~~   69 (77)
                      |.-||+|...|+.+|+.||..||++. +.|.||..+|+.+++    ||..+
T Consensus        19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~----YI~~L   65 (68)
T 2lfh_A           19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVID----YILDL   65 (68)
T ss_dssp             BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHH----HHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHH----HHHHH
Confidence            34589999999999999999999996 579999977766665    66654

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.55  E-value=3.3e-08  Score=73.65  Aligned_cols=57  Identities=18%  Similarity=0.235  Sum_probs=47.4

Q ss_pred             cccHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC--CCCcchhHHHHHhhhhhhhhh
Q psy14770         10 IESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ--GEKVEVPGSHVDTLDQGFWYK   66 (77)
Q Consensus        10 ~e~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~--~~KaSk~~IL~ktld~~~~~~   66 (77)
                      .....+|.+||..||+||+.|+..|.+|+..||...  ..|..|+.||+.||+|--..+
T Consensus         8 ~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~   66 (387)
T 4f3l_B            8 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR   66 (387)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhh
Confidence            334568999999999999999999999999999875  479999999999998654433

>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}

Probab=97.99  E-value=8.2e-06  Score=53.17  Aligned_cols=43  Identities=21%  Similarity=0.189  Sum_probs=34.4

Q ss_pred             HHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhhhhhhhhhe
Q psy14770         23 ERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQGFWYKGTR   69 (77)
Q Consensus        23 ERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~~~~~~~~~   69 (77)
                      |+.|-..++.+|+.||..||++. +.|.||..+|+.+    +.||..+
T Consensus        33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlA----i~YI~~L   76 (97)
T 4aya_A           33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHV----IDYILDL   76 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHH----HHHHHHH
Confidence            46788899999999999999985 5799999666555    4566554

>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}

Probab=97.76  E-value=3.6e-05  Score=48.97  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHhhhCCCCCC--CCcchhHHHHHhhhhh
Q psy14770         27 RDHIKDSFSSLRDSVPSLQG--EKVEVPGSHVDTLDQG   62 (77)
Q Consensus        27 R~~ik~~F~~Lr~~VP~l~~--~KaSk~~IL~ktld~~   62 (77)
                      |..|++++.+|...||.+.+  .|.+|++||.+++||-
T Consensus         4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI   41 (83)
T 4ath_A            4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYI   41 (83)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHH
T ss_pred             hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHH
Confidence            78899999999999999853  6999999999998853

>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A

Probab=83.44  E-value=1.6  Score=29.74  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhhhCCCCCC--CCcchhHHHHHhhhhh
Q psy14770         29 HIKDSFSSLRDSVPSLQG--EKVEVPGSHVDTLDQG   62 (77)
Q Consensus        29 ~ik~~F~~Lr~~VP~l~~--~KaSk~~IL~ktld~~   62 (77)
                      .|--+|+.|.+.||---+  ++.+|-.||+++.|-+
T Consensus        95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~  130 (138)
T 3muj_A           95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLV  130 (138)
T ss_dssp             CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHH
T ss_pred             ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHH
Confidence            467799999999999875  7999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	77
d1an4a_	65	a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien	5e-10
d1nkpb_	83	a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T	4e-09
d1a0aa_	63	a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa	1e-08
d1nkpa_	88	a.38.1.1 (A:) Myc proto-oncogene protein {Human (H	5e-08
d1mdya_	68	a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul	1e-07
d1nlwa_	79	a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T	1e-06
d1am9a_	80	a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI	7e-06

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 5e-10
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
          ++RA HN +ER+RRD I +    L   +P    E  +   S    L +
Sbjct: 4  KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSK 51

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 4e-09
 Identities = 33/35 (94%), Positives = 34/35 (97%)

Query: 14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
          +KRAHHNALERKRRDHIKDSF SLRDSVPSLQGEK
Sbjct: 1  DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEK 35

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (105), Expect = 1e-08
 Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPG-SHVDTLDQGFWY 65
          KR  H   E+ RR+ +  +   L   +P+   ++      S   T++    Y
Sbjct: 2  KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRY 53

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (102), Expect = 5e-08
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ 61
          KR  HN LER+RR+ +K SF +LRD +P L+  +       V  L +
Sbjct: 6  KRRTHNVLERQRRNELKRSFFALRDQIPELENNE---KAPKVVILKK 49

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.2 bits (99), Expect = 1e-07
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG 46
           +A++R      ER+R   + ++F +L+ S  S   
Sbjct: 8  TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPN 43

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 1e-06
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 16 RAHHNALERKRRDHIKDSFSSLRDSVPSLQGEK 48
          R+ HN +E+ RR H++ S   L+  VP      
Sbjct: 2  RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSS 34

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 7e-06
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQG 46
           EKR  HNA+E++ R  I D    L+D V   + 
Sbjct: 4  GEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEA 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	77
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	99.55
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	99.53
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	99.5
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	99.48
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	99.46
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	98.42

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.9e-15  Score=90.84  Aligned_cols=47  Identities=23%  Similarity=0.334  Sum_probs=42.9

Q ss_pred             HHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhh
Q psy14770         15 KRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQ   61 (77)
Q Consensus        15 kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~   61 (77)
                      .|.+||.+||+||+.|+.+|+.|++.||.+. +.|.||+.||.+|++|
T Consensus         1 ~R~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~~k~sK~~iL~~A~~y   48 (79)
T d1nlwa_           1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLH   48 (79)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCCCCCHHHHHHHHHHH
Confidence            3889999999999999999999999999986 5799999999888774

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.4e-15  Score=90.74  Aligned_cols=48  Identities=69%  Similarity=0.906  Sum_probs=44.7

Q ss_pred             HHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhh
Q psy14770         14 EKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ   61 (77)
Q Consensus        14 ~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~   61 (77)
                      ++|.+||..||+||+.|+.+|+.|++.||++.+.|.||+.||..|++|
T Consensus         1 ~rR~~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK~~iL~~A~~y   48 (83)
T d1nkpb_           1 DKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEY   48 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            489999999999999999999999999999999999999999887763

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=9.5e-15  Score=87.43  Aligned_cols=51  Identities=18%  Similarity=0.313  Sum_probs=46.5

Q ss_pred             ccHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhh
Q psy14770         11 ESAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ   61 (77)
Q Consensus        11 e~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~   61 (77)
                      ...++|.+||..||+||..|+.+|+.|+..||++.+.+.||+.||..||+|
T Consensus         8 ~~~~rR~~hn~~Er~Rr~~in~~~~~L~~llP~~~~~k~sK~~iL~~Ai~Y   58 (68)
T d1mdya_           8 TNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRY   58 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
Confidence            456799999999999999999999999999999988899999988877763

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-14  Score=89.16  Aligned_cols=52  Identities=37%  Similarity=0.453  Sum_probs=46.4

Q ss_pred             HHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC-CCCcchhHHHHHhhhhhhh
Q psy14770         13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ-GEKVEVPGSHVDTLDQGFW   64 (77)
Q Consensus        13 ~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~-~~KaSk~~IL~ktld~~~~   64 (77)
                      ..+|.+||..||+||+.|+++|+.|++.||++. +.|.||+.||.+|++|.-+
T Consensus         4 ~~rR~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~~~k~sK~~iL~~A~~yI~~   56 (88)
T d1nkpa_           4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILS   56 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCccCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999986 5789999999888885443

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2e-15  Score=89.39  Aligned_cols=49  Identities=29%  Similarity=0.426  Sum_probs=42.9

Q ss_pred             HHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCC----CCCcchhHHHHHhhhh
Q psy14770         13 AEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQ----GEKVEVPGSHVDTLDQ   61 (77)
Q Consensus        13 ~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~----~~KaSk~~IL~ktld~   61 (77)
                      ..+|.+||..||+||+.|+.+|+.|++.||.+.    +.+.||+.||.+|++|
T Consensus         3 ~~rR~~H~~~Er~RR~~in~~f~~L~~lvP~~~~~~~~~k~sK~~iL~~av~y   55 (65)
T d1an4a_           3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDY   55 (65)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCHHHHHHHHHHH
Confidence            347889999999999999999999999999985    2489999988777764

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=1.1e-14  Score=85.73  Aligned_cols=47  Identities=17%  Similarity=0.226  Sum_probs=41.7

Q ss_pred             HHHHhHHHHHhhHHHHHHHHHHHhhhCCCC-----CCCCcchhHHHHHhhhh
Q psy14770         15 KRAHHNALERKRRDHIKDSFSSLRDSVPSL-----QGEKVEVPGSHVDTLDQ   61 (77)
Q Consensus        15 kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l-----~~~KaSk~~IL~ktld~   61 (77)
                      +|.+||..||+||+.|+.+|++|++.||++     .+.|.+|+.||+.|++|
T Consensus         2 rR~~H~~~Er~RR~~in~~~~~L~~llP~~~~~~~~~~k~sKa~iL~~Av~y   53 (63)
T d1a0aa_           2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRY   53 (63)
T ss_dssp             CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCcccccHHHHHHHHHHH
Confidence            578999999999999999999999999975     25799999999888773

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.3e-14  Score=84.64  Aligned_cols=50  Identities=30%  Similarity=0.399  Sum_probs=44.2

Q ss_pred             cHHHHHHhHHHHHhhHHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhhh
Q psy14770         12 SAEKRAHHNALERKRRDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQG   62 (77)
Q Consensus        12 ~~~kR~~HN~lERkRR~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~~   62 (77)
                      ...+|.+||.+||+||+.|+++|+.|++.||+. ..|.+|+.||.+|++|.
T Consensus         3 ~~~kR~~H~~~Er~RR~~in~~~~~L~~llP~~-~~k~~K~~iL~~a~~yI   52 (80)
T d1am9a_           3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGT-EAKLNKSAVLRKAIDYI   52 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCCCCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHH
Confidence            356899999999999999999999999999975 35899999998888743

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=2.8e-08  Score=57.42  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCcchhHHHHHhhhh
Q psy14770         27 RDHIKDSFSSLRDSVPSLQGEKVEVPGSHVDTLDQ   61 (77)
Q Consensus        27 R~~ik~~F~~Lr~~VP~l~~~KaSk~~IL~ktld~   61 (77)
                      |+.|+++|..|++.||++. .|.+|+.||.+|++|
T Consensus         1 R~~in~~f~~L~~lvP~~~-~K~~Ka~iL~~Ai~Y   34 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTD-AKMHKSGVLRKAIDY   34 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSS-CCCCTTTHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhCCCCC-CcccHHHHHHHHHHH
Confidence            5679999999999999864 489999999888874