Psyllid ID: psy1486

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
Protein Sequence
RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Secondary Structure (PSIPRED)
cccccEEEEEcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEcHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEcccHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccHHHcccEcHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcc
Coil and Loop (DISEMBL)
rcqpssirlvdnvqlkagqffrpdpgyLELLTDGLKKLYVTKILGFRDDEMCAAtvlfegdpedvknneDKIYSIAKRyggipagesngrrgYMLTYIIAYIRDFACdyyfigdsfetsvpwdkTVLLCINVKKRLtrectgrwLPVLVKLLYM
Flexible Loop (DISEMBL)
rcqpssirlvdnvqlkagqffrpdpGYLELLTDGLKKLYVTKILGFRDDEMCAATVlfegdpedvknnEDKIYSIAkryggipagesngrRGYMLTYIIAYIRDFACDYYFIGDSfetsvpwdkTVLLCINVKkrltrectgrwlpvlvkllym
Low Complexity Region (SEG)
RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Disordered region (IsUnstruct)
*******RLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLY*
Disordered Region (DISOPRED)
**QPSSIRLVDNVQLKAGQFFRP****LELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Disordered Region (DISEMBL)
RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Disordered Region (DISPRO)
RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVKLLYM
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	154	2.2.26 [Sep-21-2011]
O00116	658	Alkyldihydroxyacetonephos	yes	N/A	0.909	0.212	0.546	2e-41
Q8C0I1	645	Alkyldihydroxyacetonephos	yes	N/A	0.928	0.221	0.527	1e-40
P97275	658	Alkyldihydroxyacetonephos	yes	N/A	0.909	0.212	0.531	3e-40
Q9EQR2	644	Alkyldihydroxyacetonephos	yes	N/A	0.928	0.222	0.506	1e-39
Q9V778	631	Alkyldihydroxyacetonephos	yes	N/A	0.928	0.226	0.496	3e-38
O45218	597	Alkyldihydroxyacetonephos	yes	N/A	0.961	0.247	0.423	9e-32
O96759	611	Alkyldihydroxyacetonephos	yes	N/A	0.948	0.238	0.226	3e-06
O97157	613	Alkyldihydroxyacetonephos	N/A	N/A	0.876	0.220	0.237	4e-05

>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1

 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 101/141 (71%), Gaps = 1/141 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LFE
Sbjct: 412 RCAPASIRLMDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFE 471

Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFETS
Sbjct: 472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFETS 531

Query: 120 VPWDKTVLLCINVKKRLTREC 140
            PWD+ V LC NVK+R+TREC
Sbjct: 532 APWDRVVDLCRNVKERITREC 552

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 2EC: 6

>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus musculus GN=Agps PE=1 SV=1

 Score =  165 bits (417), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/144 (52%), Positives = 100/144 (69%), Gaps = 1/144 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LFE
Sbjct: 399 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQISVATLLFE 458

Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+SFETS
Sbjct: 459 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGESFETS 518

Query: 120 VPWDKTVLLCINVKKRLTRECTGR 143
            PWD+ + LC NVK+R+ REC  R
Sbjct: 519 APWDRVIDLCRNVKERIRRECKER 542

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia porcellus GN=AGPS PE=1 SV=1

 Score =  164 bits (414), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 99/141 (70%), Gaps = 1/141 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LFE
Sbjct: 412 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFE 471

Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFETS
Sbjct: 472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETS 531

Query: 120 VPWDKTVLLCINVKKRLTREC 140
            PWD+ V LC NVK+R+ REC
Sbjct: 532 APWDRVVDLCRNVKERIRREC 552

Cavia porcellus (taxid: 10141)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus norvegicus GN=Agps PE=2 SV=1

 Score =  162 bits (409), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 99/144 (68%), Gaps = 1/144 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RC P+SIRL+DN Q + G   +P          DG KK Y+TK  GF  +++  AT+LFE
Sbjct: 398 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGFKKFYITKFKGFDPNQISVATLLFE 457

Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY +G+SFETS
Sbjct: 458 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGESFETS 517

Query: 120 VPWDKTVLLCINVKKRLTRECTGR 143
            PWD+ + LC NVK+R+ REC  R
Sbjct: 518 APWDRVIDLCRNVKERIRRECKER 541

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster GN=CG10253 PE=2 SV=1

 Score =  157 bits (396), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 99/143 (69%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 60
           RCQP+S+RL+DN Q   GQ  +P+  +   + D +K+ YVT   G   +++CAAT+LFEG
Sbjct: 365 RCQPASVRLMDNEQFMFGQALKPEKSWWASVVDAMKQRYVTSWKGIDLNQICAATLLFEG 424

Query: 61  DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSV 120
           D +DV+  E  IY IA+++ G PAG  NG RGY+LT++IAYIRDF      + +SFETSV
Sbjct: 425 DLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAESFETSV 484

Query: 121 PWDKTVLLCINVKKRLTRECTGR 143
           PWD+  LLC +VK+R+  EC+ R
Sbjct: 485 PWDRCSLLCRSVKQRVVSECSKR 507

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans GN=ads-1 PE=2 SV=1

 Score =  135 bits (340), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 64/151 (42%), Positives = 99/151 (65%), Gaps = 3/151 (1%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFR-PDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RCQP+S+RL+DN Q   GQ  +     +   L   + K+Y+T   GF+ DE+CAAT ++E
Sbjct: 341 RCQPASLRLMDNDQFVMGQALKVASDSWWADLKSSVSKMYITSWKGFKVDEICAATCVYE 400

Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           G+ E+V  +E+++  +A+++ G+  G  NG+ GY LT+ IAY+RD   ++  +G+SFETS
Sbjct: 401 GNREEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFETS 460

Query: 120 VPWDKTVLLCINVKKRLTRECTGRWL--PVL 148
           VPWDK + LC NVK+ + RE   + +  PVL
Sbjct: 461 VPWDKVLSLCRNVKELMKREAKAQGVTHPVL 491

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O96759|ADAS_DICDI Alkyldihydroxyacetonephosphate synthase OS=Dictyostelium discoideum GN=eapA PE=1 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 62/146 (42%)

Query: 4   PSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPE 63
           P+ IR+ D  + +    ++P  G +   T  + K Y+  I  F    +C + + FEG  +
Sbjct: 348 PTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKK 407

Query: 64  DVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWD 123
            V  +   ++ I  +      G + G+      Y + YIRDF  D+    D  ET+V + 
Sbjct: 408 VVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYA 467

Query: 124 KTVLLCINVKKRLTRECTGRWLPVLV 149
               L  + K+   +    + +P  +
Sbjct: 468 NLQTLWKDAKQTFVKHFKDQGIPAWI 493

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|O97157|ADAS_TRYBB Alkyldihydroxyacetonephosphate synthase OS=Trypanosoma brucei brucei PE=3 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 51/135 (37%)

Query: 3   QPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDP 62
            P ++RL D    +       D G +        K Y+  + G+   ++    V FEG  
Sbjct: 337 HPCTMRLYDEDDTRLSFAASTDSGLVSTFFSKCFKKYIATVKGWNLSKISLVVVGFEGTK 396

Query: 63  EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPW 122
                   ++  + + +G    G   G       Y + Y+RDFA  + F  D FETSV +
Sbjct: 397 AQTNCQRSELVGVFQAFGATCLGTKPGNTWQEKKYDLPYLRDFALAHNFWADVFETSVLY 456

Query: 123 DKTVLLCINVKKRLT 137
              +     VKK   
Sbjct: 457 TDAIHCWRAVKKSFA 471

Trypanosoma brucei brucei (taxid: 5702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
270012218	600	hypothetical protein TcasGA2_TC006332 [T	0.909	0.233	0.6	7e-45
327284179	634	PREDICTED: alkyldihydroxyacetonephosphat	0.909	0.220	0.560	2e-42
380012941	611	PREDICTED: alkyldihydroxyacetonephosphat	0.928	0.234	0.548	4e-42
242010624	565	predicted protein [Pediculus humanus cor	0.909	0.247	0.564	2e-41
260835972	581	hypothetical protein BRAFLDRAFT_213219 [	0.909	0.240	0.553	2e-41
328777397	407	PREDICTED: alkyldihydroxyacetonephosphat	0.928	0.351	0.541	3e-41
332024393	526	Alkyldihydroxyacetonephosphate synthase	0.909	0.266	0.553	4e-41
147907126	627	alkyldihydroxyacetonephosphate synthase,	0.928	0.228	0.541	5e-41
187607398	626	alkyldihydroxyacetonephosphate synthase,	0.928	0.228	0.541	6e-41
307206571	407	Alkyldihydroxyacetonephosphate synthase	0.909	0.343	0.531	1e-40

>gi|270012218|gb|EFA08666.1| hypothetical protein TcasGA2_TC006332 [Tribolium castaneum]

 Score =  184 bits (468), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 84/140 (60%), Positives = 106/140 (75%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 60
           RCQPSSIRL+DN Q K G   +P+  YL L+ DGLKK YVTKI GF  D MC  T+LFEG
Sbjct: 352 RCQPSSIRLMDNGQFKFGMILKPESSYLGLILDGLKKFYVTKIKGFNVDTMCVMTLLFEG 411

Query: 61  DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSV 120
           +  DVK  E KIYSI  ++GG+PAG++NG RGYMLT++IAYIRD A +Y  + +SFETSV
Sbjct: 412 EEADVKAQEKKIYSIGLQFGGMPAGQTNGERGYMLTFVIAYIRDLALEYEIVAESFETSV 471

Query: 121 PWDKTVLLCINVKKRLTREC 140
           PWD+ ++LC NVK+ + +EC
Sbjct: 472 PWDRALVLCKNVKEVIAQEC 491

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327284179|ref|XP_003226816.1| PREDICTED: alkyldihydroxyacetonephosphate synthase, peroxisomal-like [Anolis carolinensis]

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/141 (56%), Positives = 101/141 (71%), Gaps = 1/141 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RC P+SIRL+DN Q + G   +P        L DGLKK Y+TK  GF  + +C AT+LFE
Sbjct: 388 RCAPASIRLMDNEQFQFGHALKPQVASIFTSLLDGLKKFYITKFKGFDPNLLCVATLLFE 447

Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           GD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAYIRD   DYY IG+SFETS
Sbjct: 448 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYMLTFVIAYIRDMGLDYYIIGESFETS 507

Query: 120 VPWDKTVLLCINVKKRLTREC 140
           VPWD+ + LC NVK+R+ REC
Sbjct: 508 VPWDRVLDLCRNVKERIAREC 528

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380012941|ref|XP_003690531.1| PREDICTED: alkyldihydroxyacetonephosphate synthase-like [Apis florea]

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 79/144 (54%), Positives = 108/144 (75%), Gaps = 1/144 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 60
           RCQP+SIRL+DN Q + GQ  RP+  +  L+  GLK++Y+T+I  F+ D++C AT+LFEG
Sbjct: 359 RCQPASIRLMDNEQFQFGQMLRPESNWAGLILQGLKEVYITRIKRFKWDQICVATLLFEG 418

Query: 61  DP-EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           D   +V   E +IY+IAK++ GIPAGE+NG RGY+LT++IAYIRD   D+Y + +SFETS
Sbjct: 419 DTVAEVAAQEQQIYNIAKQHNGIPAGETNGERGYILTFVIAYIRDLGLDFYIVAESFETS 478

Query: 120 VPWDKTVLLCINVKKRLTRECTGR 143
           V W +T+ LC NVK R+TREC  R
Sbjct: 479 VSWSRTLSLCRNVKSRVTRECYSR 502

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010624|ref|XP_002426062.1| predicted protein [Pediculus humanus corporis] gi|212510084|gb|EEB13324.1| predicted protein [Pediculus humanus corporis]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 103/140 (73%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 60
           R QPSSIRL+DN Q K GQ  RP   Y  ++ DG+KK Y+T I  F  ++MC  T+LFEG
Sbjct: 315 RYQPSSIRLMDNEQFKFGQSLRPTSNYFGVILDGIKKTYITTIKKFDVNKMCVTTLLFEG 374

Query: 61  DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSV 120
           + ++++  E +IY IAK +GGIPAGE NG+RGY LT++IAYIRDFA D+    +SFETSV
Sbjct: 375 NAKEIEIQEKRIYEIAKTFGGIPAGEKNGQRGYTLTFVIAYIRDFALDFKIFAESFETSV 434

Query: 121 PWDKTVLLCINVKKRLTREC 140
           PWD+ + LC NVK R+T+EC
Sbjct: 435 PWDRALALCNNVKFRVTKEC 454

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260835972|ref|XP_002612981.1| hypothetical protein BRAFLDRAFT_213219 [Branchiostoma floridae] gi|229298363|gb|EEN68990.1| hypothetical protein BRAFLDRAFT_213219 [Branchiostoma floridae]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 105/141 (74%), Gaps = 1/141 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RC PSSIRL+DN+Q + GQ  +P  G +     DGLKK+Y+TK  GF  +E+C AT+LFE
Sbjct: 328 RCAPSSIRLMDNMQFQFGQALKPQAGSIFTSFVDGLKKMYITKWKGFDPNELCVATLLFE 387

Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           G  E+V   E ++Y IA ++ G+PAGE NG+RGYMLT++IAY+RD   ++Y + +SFETS
Sbjct: 388 GAKEEVLAQEKRVYEIASQFRGLPAGEENGQRGYMLTFVIAYLRDLGLEHYIVSESFETS 447

Query: 120 VPWDKTVLLCINVKKRLTREC 140
           VPWD+ + LC NVK+RLTREC
Sbjct: 448 VPWDRVLDLCRNVKERLTREC 468

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|328777397|ref|XP_003249334.1| PREDICTED: alkyldihydroxyacetonephosphate synthase-like [Apis mellifera]

 Score =  173 bits (438), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 107/144 (74%), Gaps = 1/144 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 60
           RCQP+SIRL+DN Q + GQ  RP+  +  L+  GLK++Y+T+I  F+ D++C AT+LFEG
Sbjct: 155 RCQPASIRLMDNEQFQFGQMLRPESNWPGLILQGLKEVYITRIKRFKWDQICVATLLFEG 214

Query: 61  DP-EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           D   +V   E +IY+IAK++ GIPAGE+NG RGY+LT++IAYIRD   D+Y + +SFETS
Sbjct: 215 DTVAEVAAQEQQIYNIAKQHNGIPAGETNGERGYILTFVIAYIRDLGLDFYIVAESFETS 274

Query: 120 VPWDKTVLLCINVKKRLTRECTGR 143
           V W +T+ LC NVK R+ REC  R
Sbjct: 275 VSWSRTLSLCRNVKSRVIRECYSR 298

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024393|gb|EGI64591.1| Alkyldihydroxyacetonephosphate synthase [Acromyrmex echinatior]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 104/141 (73%), Gaps = 1/141 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 60
           RCQP+SIRL+DN Q + GQ  RP+  +  L+  GLK +Y+T+I GF+ D++C AT+L EG
Sbjct: 274 RCQPASIRLMDNEQFQMGQTLRPESSWGGLILQGLKHMYITRIKGFQWDQICVATLLMEG 333

Query: 61  D-PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           D  ED+   E KIY IA +YGGIPAGE+NG RGYMLT++IAYIRD   +Y  + +SFETS
Sbjct: 334 DVAEDIAAQERKIYKIANKYGGIPAGEANGERGYMLTFVIAYIRDLGIEYNVLAESFETS 393

Query: 120 VPWDKTVLLCINVKKRLTREC 140
           V W++ + LC NVK R+ R+C
Sbjct: 394 VSWNRALSLCRNVKSRVARDC 414

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|147907126|ref|NP_001086573.1| alkyldihydroxyacetonephosphate synthase, peroxisomal [Xenopus laevis] gi|49903684|gb|AAH76825.1| Agps-prov protein [Xenopus laevis]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 102/144 (70%), Gaps = 1/144 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++C AT+LFE
Sbjct: 381 RCAPASIRLMDNAQFQFGHALKPQVASIFTSFLDGLKKFYITKFKGFDPNQLCVATLLFE 440

Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           GD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+SFETS
Sbjct: 441 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYMLTFVIAYLRDLGMDYYLIGESFETS 500

Query: 120 VPWDKTVLLCINVKKRLTRECTGR 143
           VPWD+ + LC NVK+R+ REC  R
Sbjct: 501 VPWDRVLDLCRNVKERIVRECKER 524

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|187607398|ref|NP_001120301.1| alkyldihydroxyacetonephosphate synthase, peroxisomal [Xenopus (Silurana) tropicalis] gi|169641958|gb|AAI60639.1| LOC100145360 protein [Xenopus (Silurana) tropicalis]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 102/144 (70%), Gaps = 1/144 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++C AT+LFE
Sbjct: 380 RCAPASIRLMDNAQFQFGHALKPQVASIFTSFLDGLKKFYITKFKGFDPNQLCVATLLFE 439

Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           GD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+SFETS
Sbjct: 440 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYMLTFVIAYLRDLGMDYYVIGESFETS 499

Query: 120 VPWDKTVLLCINVKKRLTRECTGR 143
           VPWD+ + LC NVK+R+ REC  R
Sbjct: 500 VPWDRVLDLCRNVKERIVRECKER 523

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307206571|gb|EFN84573.1| Alkyldihydroxyacetonephosphate synthase [Harpegnathos saltator]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 107/141 (75%), Gaps = 1/141 (0%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 60
           RCQP+SIRL+DN Q + GQ  RP+ G+++++   LK++Y+T I GF+ D++C AT+L EG
Sbjct: 155 RCQPASIRLMDNEQFQLGQALRPESGWIKMILQSLKQMYITGIKGFQWDQICVATLLMEG 214

Query: 61  D-PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           +   DV   E KIYSI ++YGG+PAGE+NG RGYMLT++I YIRD A ++  + +SFETS
Sbjct: 215 NVATDVTVQERKIYSIVEKYGGVPAGETNGERGYMLTFVIGYIRDLALEFNVLAESFETS 274

Query: 120 VPWDKTVLLCINVKKRLTREC 140
           V W++T+ LC NVK R+ R+C
Sbjct: 275 VSWNRTLSLCRNVKSRVARDC 295

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	154
UNIPROTKB|F1P5J7	638	AGPS "Uncharacterized protein"	0.909	0.219	0.553	5.6e-40
UNIPROTKB|O00116	658	AGPS "Alkyldihydroxyacetonepho	0.909	0.212	0.546	3.6e-39
UNIPROTKB|E1BPV2	576	AGPS "Uncharacterized protein"	0.909	0.243	0.539	4.8e-39
UNIPROTKB|E2QVV9	653	AGPS "Uncharacterized protein"	0.909	0.214	0.539	7.5e-39
UNIPROTKB|F6Y1U6	663	AGPS "Uncharacterized protein"	0.909	0.211	0.539	8.4e-39
UNIPROTKB|I3LM15	646	AGPS "Uncharacterized protein"	0.909	0.216	0.539	8.9e-39
UNIPROTKB|J9NZ69	699	AGPS "Uncharacterized protein"	0.909	0.200	0.539	1.2e-38
MGI|MGI:2443065	645	Agps "alkylglycerone phosphate	0.928	0.221	0.527	2.5e-38
UNIPROTKB|P97275	658	AGPS "Alkyldihydroxyacetonepho	0.909	0.212	0.531	4.8e-38
ZFIN|ZDB-GENE-031118-14	629	agps "alkylglycerone phosphate	0.928	0.227	0.527	5.8e-38

UNIPROTKB|F1P5J7 AGPS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 428 (155.7 bits), Expect = 5.6e-40, P = 5.6e-40
 Identities = 78/141 (55%), Positives = 101/141 (71%)

Query:     1 RCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
             RC P+SIRLVDN Q + G   +P    +     DGLKK Y+TK  GF  + +C AT+LFE
Sbjct:   392 RCAPASIRLVDNAQFQFGHALKPQVASIFTSFLDGLKKFYITKFKGFDPNVLCVATLLFE 451

Query:    60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
             GD E V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY IG+SFETS
Sbjct:   452 GDREKVLQHEKQVYDIATKFGGLAAGEDNGQRGYMLTFVIAYLRDLGLDYYVIGESFETS 511

Query:   120 VPWDKTVLLCINVKKRLTREC 140
             VPWD+ + LC NVK+R+ REC
Sbjct:   512 VPWDRVLDLCRNVKERIVREC 532

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

UNIPROTKB|O00116 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Homo sapiens (taxid:9606)]

 Score = 422 (153.6 bits), Expect = 3.6e-39, P = 3.6e-39
 Identities = 77/141 (54%), Positives = 102/141 (72%)

Query:     1 RCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
             RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LFE
Sbjct:   412 RCAPASIRLMDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFE 471

Query:    60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
             GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+SFETS
Sbjct:   472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFETS 531

Query:   120 VPWDKTVLLCINVKKRLTREC 140
              PWD+ V LC NVK+R+TREC
Sbjct:   532 APWDRVVDLCRNVKERITREC 552

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008611 "ether lipid biosynthetic process" evidence=IEA;ISS;TAS

GO:0071949 "FAD binding" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0008610 "lipid biosynthetic process" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E1BPV2 AGPS "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 76/141 (53%), Positives = 100/141 (70%)

Query:     1 RCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
             RC P+SIRL+DN Q   G   +P    +     DGLKK Y+TK  GF  +++  AT+LFE
Sbjct:   330 RCAPASIRLMDNEQFHFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFE 389

Query:    60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
             GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFETS
Sbjct:   390 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFETS 449

Query:   120 VPWDKTVLLCINVKKRLTREC 140
              PWD+ V LC NVK+R+TREC
Sbjct:   450 APWDRVVDLCRNVKERITREC 470

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|E2QVV9 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 419 (152.6 bits), Expect = 7.5e-39, P = 7.5e-39
 Identities = 76/141 (53%), Positives = 101/141 (71%)

Query:     1 RCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
             RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LFE
Sbjct:   407 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLTVATLLFE 466

Query:    60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
             GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFETS
Sbjct:   467 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFETS 526

Query:   120 VPWDKTVLLCINVKKRLTREC 140
              PWD+ V LC NVK+R+TREC
Sbjct:   527 APWDRVVDLCRNVKERITREC 547

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|F6Y1U6 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 419 (152.6 bits), Expect = 8.4e-39, P = 8.4e-39
 Identities = 76/141 (53%), Positives = 101/141 (71%)

Query:     1 RCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
             RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LFE
Sbjct:   417 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLTVATLLFE 476

Query:    60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
             GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFETS
Sbjct:   477 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFETS 536

Query:   120 VPWDKTVLLCINVKKRLTREC 140
              PWD+ V LC NVK+R+TREC
Sbjct:   537 APWDRVVDLCRNVKERITREC 557

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

UNIPROTKB|I3LM15 AGPS "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 418 (152.2 bits), Expect = 8.9e-39, P = 8.9e-39
 Identities = 76/141 (53%), Positives = 101/141 (71%)

Query:     1 RCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
             RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LFE
Sbjct:   440 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFE 499

Query:    60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
             GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFETS
Sbjct:   500 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVLGESFETS 559

Query:   120 VPWDKTVLLCINVKKRLTREC 140
              PWD+ V LC NVK+R+TREC
Sbjct:   560 APWDRVVDLCRNVKERITREC 580

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

UNIPROTKB|J9NZ69 AGPS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 419 (152.6 bits), Expect = 1.2e-38, P = 1.2e-38
 Identities = 76/141 (53%), Positives = 101/141 (71%)

Query:     1 RCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
             RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LFE
Sbjct:   413 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLTVATLLFE 472

Query:    60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
             GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY +G+SFETS
Sbjct:   473 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYILGESFETS 532

Query:   120 VPWDKTVLLCINVKKRLTREC 140
              PWD+ V LC NVK+R+TREC
Sbjct:   533 APWDRVVDLCRNVKERITREC 553

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

MGI|MGI:2443065 Agps "alkylglycerone phosphate synthase" [Mus musculus (taxid:10090)]

 Score = 414 (150.8 bits), Expect = 2.5e-38, P = 2.5e-38
 Identities = 76/144 (52%), Positives = 101/144 (70%)

Query:     1 RCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
             RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LFE
Sbjct:   399 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQISVATLLFE 458

Query:    60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
             GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD   +YY IG+SFETS
Sbjct:   459 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGESFETS 518

Query:   120 VPWDKTVLLCINVKKRLTRECTGR 143
              PWD+ + LC NVK+R+ REC  R
Sbjct:   519 APWDRVIDLCRNVKERIRRECKER 542

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=ISO

GO:0008610 "lipid biosynthetic process" evidence=ISO

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|P97275 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" [Cavia porcellus (taxid:10141)]

 Score = 412 (150.1 bits), Expect = 4.8e-38, P = 4.8e-38
 Identities = 75/141 (53%), Positives = 100/141 (70%)

Query:     1 RCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
             RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF  +++  AT+LFE
Sbjct:   412 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFE 471

Query:    60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
             GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFETS
Sbjct:   472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETS 531

Query:   120 VPWDKTVLLCINVKKRLTREC 140
              PWD+ V LC NVK+R+ REC
Sbjct:   532 APWDRVVDLCRNVKERIRREC 552

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IDA

GO:0008611 "ether lipid biosynthetic process" evidence=IDA

GO:0071949 "FAD binding" evidence=IDA

ZFIN|ZDB-GENE-031118-14 agps "alkylglycerone phosphate synthase" [Danio rerio (taxid:7955)]

 Score = 410 (149.4 bits), Expect = 5.8e-38, P = 5.8e-38
 Identities = 76/144 (52%), Positives = 99/144 (68%)

Query:     1 RCQPSSIRLVDNVQLKAGQFFRPDPGYL-ELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
             RC P+SIRL+DN Q + G   +P    +     DGLKK Y+TK  GF    +C AT+LFE
Sbjct:   383 RCAPASIRLMDNEQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPHHLCVATLLFE 442

Query:    60 GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
             GD   V  +E ++Y IA ++GG+ AGE NG+RGYMLT++IAY+RD   DYY I +SFETS
Sbjct:   443 GDRGKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYMLTFVIAYLRDLGMDYYVIDESFETS 502

Query:   120 VPWDKTVLLCINVKKRLTRECTGR 143
             VPWD+ + LC NVK+R+ REC  R
Sbjct:   503 VPWDRVLDLCRNVKERIIRECKER 526

GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008610 "lipid biosynthetic process" evidence=IEA

GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008609 "alkylglycerone-phosphate synthase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9EQR2	ADAS_RAT	2, ., 5, ., 1, ., 2, 6	0.5069	0.9285	0.2220	yes	N/A
O00116	ADAS_HUMAN	2, ., 5, ., 1, ., 2, 6	0.5460	0.9090	0.2127	yes	N/A
P97275	ADAS_CAVPO	2, ., 5, ., 1, ., 2, 6	0.5319	0.9090	0.2127	yes	N/A
Q8C0I1	ADAS_MOUSE	2, ., 5, ., 1, ., 2, 6	0.5277	0.9285	0.2217	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	154
pfam02913	247	pfam02913, FAD-oxidase_C, FAD linked oxidases, C-t	1e-07

>gnl|CDD|217283 pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 30/149 (20%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 60
              P+++ L+D   L                         T  LG   D   A  V FEG
Sbjct: 29  GIGPAALELMDKAALDLV--------------------LGTLGLGLPRDAPAALLVEFEG 68

Query: 61  DPEDVKNNEDKIYSIAKRYGGIPAG--------ESNGRRGYMLTYIIAYIRDFACDYYFI 112
           + E+V   E    ++     G  AG            R      Y +  +RD       +
Sbjct: 69  NDEEV-VEERLEAAVEAILEGAGAGDVVVAEDEAERERLWRARKYAMP-LRDALGGAGPL 126

Query: 113 GDSFETSVPWDKTVLLCINVKKRLTRECT 141
             + + SVPW +   L  ++K+ L +   
Sbjct: 127 VFTEDVSVPWSRLPDLVADIKELLAKYGL 155

This domain has a ferredoxin-like fold. Length = 247

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	154
KOG1233|consensus	613		100.0
PF02913	248	FAD-oxidase_C: FAD linked oxidases, C-terminal dom	99.12
TIGR00387	413	glcD glycolate oxidase, subunit GlcD. This protein	98.62
PRK11230	499	glycolate oxidase subunit GlcD; Provisional	98.3
PLN02805	555	D-lactate dehydrogenase [cytochrome]	98.22
COG3286	204	Uncharacterized protein conserved in archaea [Func	90.85

>KOG1233|consensus

Probab=100.00  E-value=2.6e-39  Score=277.09  Aligned_cols=150  Identities=48%  Similarity=0.897  Sum_probs=145.8

Q ss_pred             CCCCceeEeechhhhhhcccCCCC-CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHh
Q psy1486           1 RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRY   79 (154)
Q Consensus         1 ~l~Pa~~RLsD~~Et~~~lal~~~-~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~   79 (154)
                      ||+|+++||+||+|+.||+||+|. .++++.+.+.++++|+++|||||.+++|.+++.|||+.++|+++++++++|+.++
T Consensus       367 RCqPAS~RLMDN~QF~fGqALKp~~~Swwas~~d~~kk~YiTswKGfd~nqicaATllfEGdre~V~qhE~~~y~iAekF  446 (613)
T KOG1233|consen  367 RCQPASLRLMDNDQFVFGQALKPASDSWWASLKDSVKKMYITSWKGFDVNQICAATLLFEGDREEVDQHEERLYKIAEKF  446 (613)
T ss_pred             hcCchheeeecccceecccccCcchhhHHHHHHHHHhhheeecccCcCHhhhhhhhheecccHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999998 6999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEEE
Q psy1486          80 GGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLVK  150 (154)
Q Consensus        80 GG~~~G~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~~~v~  150 (154)
                      +|+.+|+.+|+++|.++|.++|+||+.+.+|+++|+||||+||+++..||++|+++++++|+++|+...++
T Consensus       447 ~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~LCRnVKer~~rEck~~gv~~~~~  517 (613)
T KOG1233|consen  447 HGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSLCRNVKERMKRECKAQGVTHPVL  517 (613)
T ss_pred             CCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999876543

>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage

Probab=99.12  E-value=4.6e-11  Score=94.10  Aligned_cols=120  Identities=25%  Similarity=0.273  Sum_probs=92.2

Q ss_pred             CCCCceeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChH-HhHhHHH-HHHHHHHH
Q psy1486           1 RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPE-DVKNNED-KIYSIAKR   78 (154)
Q Consensus         1 ~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~-~V~~~~~-~~~~i~~~   78 (154)
                      ++.|+.++|+|+.++.......+.                    .......|++++.|+|+.+ .++.+.+ .+.+++++
T Consensus        29 g~~p~a~el~d~~~~~~~~~~~~~--------------------~~~~~~~~~llv~~~g~~~~~~~~~~~~~i~~~~~~   88 (248)
T PF02913_consen   29 GIIPSAIELLDSAALKLALEHWGE--------------------PLPPEGGAVLLVEFEGSDEEAVEEQLEAEIEEICKK   88 (248)
T ss_dssp             CSSCCECCCCHHHHHHHHHHSEEE--------------------TSSTTTSEEEEEECCCHHHCCHHHHHHHHHHHHHCT
T ss_pred             CCCceEEeeeCHHHHHHHHhhcCC--------------------CccCCcccEEEEEECCCcHHHHHHHHHHHHHHHHhh
Confidence            468999999999998765432221                    1223345899999999994 5666666 78888877


Q ss_pred             hCCCC-----CCCcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHH
Q psy1486          79 YGGIP-----AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC  140 (154)
Q Consensus        79 ~GG~~-----~G~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~  140 (154)
                      +|+..     -.+...+-|..-++..||+++...+.+...+++|+++||++++++++.+++.+.+..
T Consensus        89 ~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~~~l~~~~~~~~~~~~~~~  155 (248)
T PF02913_consen   89 YGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPPSRLPEFLREIRALLREYG  155 (248)
T ss_dssp             CTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCHHHHHHHHHHHHHHHHHCT
T ss_pred             cCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccchhhhhHHHhhhhhhhhcc
Confidence            77754     112335678877777789999999999999999999999999999999987777664

The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....

>TIGR00387 glcD glycolate oxidase, subunit GlcD

Probab=98.62  E-value=1.5e-07  Score=81.92  Aligned_cols=115  Identities=18%  Similarity=0.204  Sum_probs=82.1

Q ss_pred             CCCCceeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHhC
Q psy1486           1 RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYG   80 (154)
Q Consensus         1 ~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~G   80 (154)
                      ++.|+.++++|+.+......                  +.  ..+...+..+++++.|+|++++++.+.+++.++++++|
T Consensus       201 ~~~p~a~el~d~~~~~~~~~------------------~~--~~~~p~~~~~~l~v~~~g~~~~~~~~~~~~~~~~~~~~  260 (413)
T TIGR00387       201 GIIPAGMEFLDNLSIKAVED------------------IS--GIGLPKDAGAILLVEIDGVHEAVERDEEKIEQICRKNG  260 (413)
T ss_pred             CCCcEEEEccCHHHHHHHHH------------------hc--CCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHHhCC
Confidence            46799999999987643110                  00  01122234588999999999999999999999999998


Q ss_pred             CCCC----C-CcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHH
Q psy1486          81 GIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE  139 (154)
Q Consensus        81 G~~~----G-~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~  139 (154)
                      +...    + +...+.|...++..|++++.. ...+   +.|+++||++++++++.+++.+.+.
T Consensus       261 ~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l~~~~~~~~~~~~~~  320 (413)
T TIGR00387       261 AVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKLPEALRGIADIARKY  320 (413)
T ss_pred             CceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHHHHHHHHHHHHHHHc
Confidence            7532    1 235567887777789998743 2222   3579999999999999997766543

This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.

>PRK11230 glycolate oxidase subunit GlcD; Provisional

Probab=98.30  E-value=5e-06  Score=74.40  Aligned_cols=112  Identities=12%  Similarity=0.186  Sum_probs=76.3

Q ss_pred             CCCCceeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHhC
Q psy1486           1 RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYG   80 (154)
Q Consensus         1 ~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~G   80 (154)
                      ++.|+.++++|+.......                  .++.  .+...+..+++++.++|+++.++.+.+.+.++++++|
T Consensus       258 ~~~p~~~el~d~~~~~~~~------------------~~~~--~~~p~~~~~~ll~e~~g~~~~v~~~~~~l~~~~~~~g  317 (499)
T PRK11230        258 GIIPGGLEMMDNLSIRAAE------------------DFIH--AGYPVDAEAILLCELDGVESDVQEDCERVNDILLKAG  317 (499)
T ss_pred             CCCcEEEEeeCHHHHHHHH------------------HhcC--CCCCCCcceEEEEEecCCchHHHHHHHHHHHHHHhcC
Confidence            3579999999988764210                  0110  1111123478899999999999999999999999999


Q ss_pred             CCCCC-----CcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHH
Q psy1486          81 GIPAG-----ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRL  136 (154)
Q Consensus        81 G~~~G-----~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al  136 (154)
                      +..+.     ++..+.|..-+...|+++..  ..+++.  .++++||++++++++.+++..
T Consensus       318 ~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~~--~dv~vP~~~l~~~~~~~~~~~  374 (499)
T PRK11230        318 ATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYYC--MDGTIPRRELPGVLEGIARLS  374 (499)
T ss_pred             CceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCeeE--EeecCChHHHHHHHHHHHHHH
Confidence            75332     12334666533445888763  334444  499999999999999997744

>PLN02805 D-lactate dehydrogenase [cytochrome]

Probab=98.22  E-value=1.3e-05  Score=72.67  Aligned_cols=112  Identities=18%  Similarity=0.074  Sum_probs=74.8

Q ss_pred             CCCCceeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHhC
Q psy1486           1 RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYG   80 (154)
Q Consensus         1 ~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~G   80 (154)
                      ++.|+.++++|+.+...-..                  +.  -.++.  ..|++++.|+|++++++.+.+.+.+|++++|
T Consensus       335 g~~psa~ElmD~~~~~~~~~------------------~~--~~~~p--~~~~Ll~e~~g~~~~~~~~~~~~~~i~~~~g  392 (555)
T PLN02805        335 GIQVSRVELLDEVQIRAINM------------------AN--GKNLP--EAPTLMFEFIGTEAYAREQTLIVQKIASKHN  392 (555)
T ss_pred             CCCcEEEEEECHHHHHHHHH------------------hc--CCCCC--cceEEEEEEecCcHHHHHHHHHHHHHHHhCC
Confidence            46899999999988753210                  00  00111  2489999999999999999999999999999


Q ss_pred             CC--CCCCcc---hhhhhhhhhhh-hhhhhhhhccccceeeeecccccCChHHHHHHHHHHHH
Q psy1486          81 GI--PAGESN---GRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT  137 (154)
Q Consensus        81 G~--~~G~~~---g~~W~~~rF~~-pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~  137 (154)
                      +.  .+.+.+   .+.|. .|-.. +.+..  ...+....+.+++||||+++++++.+++.+.
T Consensus       393 ~~~~~~a~~~~e~~~lW~-~R~~~~~~~~~--~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~  452 (555)
T PLN02805        393 GSDFVFAEEPEAKKELWK-IRKEALWACFA--MEPKYEAMITDVCVPLSHLAELISRSKKELD  452 (555)
T ss_pred             CceEEEeCCHHHHHHHHH-HHHHHHHHHhh--cCCCCceeEEEEEEEHHHHHHHHHHHHHHHH
Confidence            84  222322   34566 34333 22221  1224444577999999999999999976654

>COG3286 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.85  E-value=1.3  Score=35.61  Aligned_cols=86  Identities=14%  Similarity=0.147  Sum_probs=61.4

Q ss_pred             EEEEEeCChHHhHhHHHHHHHHHHHhCCCCCCCcch-----hhhhhhhhhh--hhhhhhhhcccccee----eeeccccc
Q psy1486          54 ATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNG-----RRGYMLTYII--AYIRDFACDYYFIGD----SFETSVPW  122 (154)
Q Consensus        54 l~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g-----~~W~~~rF~~--pYLRd~l~d~G~~~D----T~ETA~~W  122 (154)
                      +.+-..|.+++++..-..+.++.+..-+..-+...|     .--...+=++  +-|+|.|--+|+=++    -++|++||
T Consensus        39 vkV~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~  118 (204)
T COG3286          39 VKVNVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPW  118 (204)
T ss_pred             EEEEEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCH
Confidence            555677889999999999988888766654333322     1111222223  278999999998765    58999999


Q ss_pred             CChHHHHHHHHHHHHHH
Q psy1486         123 DKTVLLCINVKKRLTRE  139 (154)
Q Consensus       123 s~l~~l~~~V~~al~~~  139 (154)
                      |.+..+.+++-+..+++
T Consensus       119 ~ev~E~vreLse~~~E~  135 (204)
T COG3286         119 SEVVELVRELSEVYREA  135 (204)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999987776665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	154
4bca_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		2e-41
4bby_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		3e-41
4bc7_A	658	Mammalian Alkyldihydroxyacetonephosphate Synthase:		9e-41
2uuu_A	584	Alkyldihydroxyacetonephosphate Synthase In P212121		3e-07

>pdb|4BCA|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Tyr578phe Mutant Length = 658

Iteration: 1
 Score =  164 bits (414), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 1   RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LFE
Sbjct: 412 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFE 471
Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFETS
Sbjct: 472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETS 531
Query: 120 VPWDKTVLLCINVKKRLTREC 140
            PWD+ V LC NVK+R+ REC
Sbjct: 532 APWDRVVDLCRNVKERIRREC 552

>pdb|4BBY|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Wild-Type Length = 658

Iteration: 1
 Score =  164 bits (414), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
Query: 1   RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RC P+SIRL+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LFE
Sbjct: 412 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFE 471
Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFETS
Sbjct: 472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETS 531
Query: 120 VPWDKTVLLCINVKKRLTREC 140
            PWD+ V LC NVK+R+ REC
Sbjct: 532 APWDRVVDLCRNVKERIRREC 552

>pdb|4BC7|A Chain A, Mammalian Alkyldihydroxyacetonephosphate Synthase: Arg419his Mutant Length = 658

Iteration: 1
 Score =  162 bits (409), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 74/141 (52%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
Query: 1   RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFE 59
           RC P+SI L+DN Q + G   +P          DGLKK Y+TK  GF  +++  AT+LFE
Sbjct: 412 RCAPASIHLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFE 471
Query: 60  GDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 119
           GD E V  +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD   +YY IG+SFETS
Sbjct: 472 GDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETS 531
Query: 120 VPWDKTVLLCINVKKRLTREC 140
            PWD+ V LC NVK+R+ REC
Sbjct: 532 APWDRVVDLCRNVKERIRREC 552

>pdb|2UUU|A Chain A, Alkyldihydroxyacetonephosphate Synthase In P212121 Length = 584

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/146 (22%), Positives = 62/146 (42%)
Query: 4   PSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPE 63
           P+ IR+ D  + +    ++P  G +   T  + K Y+  I  F    +C + + FEG  +
Sbjct: 345 PTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKK 404
Query: 64  DVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWD 123
            V  +   ++ I  +      G + G+      Y + YIRDF  D+    D  ET+V + 
Sbjct: 405 VVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYA 464
Query: 124 KTVLLCINVKKRLTRECTGRWLPVLV 149
               L  + K+   +    + +P  +
Sbjct: 465 NLQTLWKDAKQTFVKHFKDQGIPAWI 490

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	154
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	4e-34

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Length = 584

 Score =  124 bits (313), Expect = 4e-34
 Identities = 33/149 (22%), Positives = 62/149 (41%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 60
              P+ IR+ D  + +    ++P  G +   T  + K Y+  I  F    +C + + FEG
Sbjct: 342 EVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEG 401

Query: 61  DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSV 120
             + V  +   ++ I  +      G + G+      Y + YIRDF  D+    D  ET+V
Sbjct: 402 PKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTV 461

Query: 121 PWDKTVLLCINVKKRLTRECTGRWLPVLV 149
            +     L  + K+   +    + +P  +
Sbjct: 462 SYANLQTLWKDAKQTFVKHFKDQGIPAWI 490

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	154
2uuu_A	584	Alkyldihydroxyacetonephosphate synthase; transfera	99.73
4bby_A	658	Alkyldihydroxyacetonephosphate synthase, peroxiso;	99.7
1f0x_A	571	DLDH, D-lactate dehydrogenase; oxidoreductase; HET	98.14
3pm9_A	476	Putative oxidoreductase; putative D-2-hydroxygluta	97.75
1e8g_A	560	Vanillyl-alcohol oxidase; oxidoreductase, flavoenz	97.6
2exr_A	524	Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin	96.11
1wvf_A	520	4-cresol dehydrogenase [hydroxylating] flavoprote	95.68

>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*

Probab=99.73  E-value=1.7e-17  Score=148.51  Aligned_cols=149  Identities=22%  Similarity=0.367  Sum_probs=125.7

Q ss_pred             CCCCceeEeechhhhhhcccCCCCCCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHhC
Q psy1486           1 RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYG   80 (154)
Q Consensus         1 ~l~Pa~~RLsD~~Et~~~lal~~~~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~G   80 (154)
                      ++.|+.++|+|+.++.+.++..+.++....+.+.+.+.|+.+++++..+..|++++.|+|++++|+.+.+++.++|+++|
T Consensus       342 ~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llve~~g~~~~v~~~~~~~~~~~~~~g  421 (584)
T 2uuu_A          342 EVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFKNVCLSIIGFEGPKKVVDFHRTSVFDILSKNA  421 (584)
T ss_dssp             TCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTTTCEEEEEEEEECHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCceEEEEechhHHHHHhhccCcccccchhhhhhHHHhhhhccCCCCCccEEEEEEEecChHHHHHHHHHHHHHHHHCC
Confidence            47899999999999887777655433333333444445665566776445699999999999999999999999999999


Q ss_pred             CCCCCCcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCCcEE
Q psy1486          81 GIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLPVLV  149 (154)
Q Consensus        81 G~~~G~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~~~v  149 (154)
                      |...++...+.|+..|+..||+|+.++++|.+.+++||+||||+++++++++++.+.+.++++|.++++
T Consensus       422 ~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~~~~~~~l~~~~~~~g~~~~~  490 (584)
T 2uuu_A          422 AFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLWKDAKQTFVKHFKDQGIPAWI  490 (584)
T ss_dssp             CEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHHHHHHHHHHhHHHhcCCeeEE
Confidence            988888889999999999999999999999999999999999999999999999999999998887543

>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*

Probab=99.70  E-value=5.2e-17  Score=146.76  Aligned_cols=146  Identities=51%  Similarity=0.999  Sum_probs=122.1

Q ss_pred             CCCCceeEeechhhhhhcccCCCC-CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHh
Q psy1486           1 RCQPSSIRLVDNVQLKAGQFFRPD-PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRY   79 (154)
Q Consensus         1 ~l~Pa~~RLsD~~Et~~~lal~~~-~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~   79 (154)
                      ++.|+++||+|+.++.+..++.+. ......+.++....++..++|++++..|++++.|||+.+.+..+.+.+.++++++
T Consensus       412 ~~~psa~El~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~eg~~~~v~~~~~~~~~~~~~~  491 (658)
T 4bby_A          412 RCAPASIRLMDNQQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKF  491 (658)
T ss_dssp             TCCCSEEEEECHHHHHHHHHTSSCCCCTTCC--------------CCCTTTCEEEEEEEEECHHHHHHHHHHHHHHHHTT
T ss_pred             CCCccccccccHHHHHHHHhhcccccccccccccchhhhhhhhhccCChHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence            468999999999999988887765 4445555566677788888999988899999999999999999999999999999


Q ss_pred             CCCCCCCcchhhhhhhhhhhhhhhhhhhccccceeeeecccccCChHHHHHHHHHHHHHHHhccCCC
Q psy1486          80 GGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTGRWLP  146 (154)
Q Consensus        80 GG~~~G~~~g~~W~~~rF~~pYLRd~l~d~G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~g~~  146 (154)
                      ||+..++..+++|+..||..||+|+..++.+...+++||++||++++++++++++.+.+.+.+.++.
T Consensus       492 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~~~v~~~l~~~~~~~g~~  558 (658)
T 4bby_A          492 GGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLCRNVKERIRRECKEKGVQ  558 (658)
T ss_dssp             TCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999887763

>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1

Probab=98.14  E-value=2.7e-07  Score=82.42  Aligned_cols=93  Identities=11%  Similarity=0.100  Sum_probs=68.3

Q ss_pred             hcCCCCCCceEEEEEEeCChHHhHhHHHHHHHHHHHhCCCCC--CCcchhhhhhhhhhhh----hhhhhhhc-cccceee
Q psy1486          43 ILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDS  115 (154)
Q Consensus        43 ~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~g~~W~~~rF~~p----YLRd~l~d-~G~~~DT  115 (154)
                      ++||+....+.+++-|+|+..+..  .+.+.++++.++|...  .++.+++|...||+.+    ++|+...+ .| ...+
T Consensus       381 ~~~~~~~~~~~llve~~g~~~~~~--~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~  457 (571)
T 1f0x_A          381 MKNWRDKYEHHLLLKMAGDGVGEA--KSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILA  457 (571)
T ss_dssp             HHHHHHHCSEEEEEEECTTHHHHH--HHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEE
T ss_pred             hhcccccCceEEEEEEecCcHHHH--HHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceE
Confidence            444443334889999999876432  5556678888765433  4567788888999996    88987765 33 3689


Q ss_pred             eecccccCChHHHHHHHHHHHHHH
Q psy1486         116 FETSVPWDKTVLLCINVKKRLTRE  139 (154)
Q Consensus       116 ~ETA~~Ws~l~~l~~~V~~al~~~  139 (154)
                      +|||+||++++.+ +++++.+.+.
T Consensus       458 ~Dvavp~~~l~~~-~~~~~~l~~~  480 (571)
T 1f0x_A          458 LDIALRRNDTEWY-EHLPPEIDSQ  480 (571)
T ss_dssp             EEEECCTTCSCCS-CCCCHHHHTT
T ss_pred             EEEEecHHHhHHH-HHHHHHHHhh
Confidence            9999999999999 9888777654

>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}

Probab=97.75  E-value=9.7e-05  Score=64.36  Aligned_cols=83  Identities=10%  Similarity=-0.052  Sum_probs=61.8

Q ss_pred             ceEEEEEEeCChHHhHhHHHHHHHHHHHhCCCCC---CC---cchhhhhhhhhhh-hhhhhhhhccccceeeeecccccC
Q psy1486          51 MCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA---GE---SNGRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWD  123 (154)
Q Consensus        51 ~cll~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~---G~---~~g~~W~~~rF~~-pYLRd~l~d~G~~~DT~ETA~~Ws  123 (154)
                      .+++++.|+|+.++++.+.+++.+++.++|++.-   .+   ...+-|. .|-.. +.++    ..|. ..+.+++||||
T Consensus       288 ~~~llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~-~R~~~~~~~~----~~g~-~~~~Dv~vP~~  361 (476)
T 3pm9_A          288 PWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWK-LREEISPAQK----PEGG-SIKHDISVPVA  361 (476)
T ss_dssp             SEEEEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHH-HHHTHHHHTG----GGCC-EECCEEECCGG
T ss_pred             CeEEEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHH-HHHHHHHHHh----hcCC-ceeEEEEeeHH
Confidence            4899999999998898899999999999887431   11   2234554 45444 3333    2343 68899999999


Q ss_pred             ChHHHHHHHHHHHHHH
Q psy1486         124 KTVLLCINVKKRLTRE  139 (154)
Q Consensus       124 ~l~~l~~~V~~al~~~  139 (154)
                      +++++++.+++.+.+.
T Consensus       362 ~l~~~~~~~~~~~~~~  377 (476)
T 3pm9_A          362 AVPQFIEQANAAVVAL  377 (476)
T ss_dssp             GHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999998887776

>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*

Probab=97.60  E-value=0.00013  Score=64.54  Aligned_cols=86  Identities=9%  Similarity=-0.113  Sum_probs=64.1

Q ss_pred             ceEEEEEEeCChHHhHhHHHHHHHHHHHhCCCCC--CCcc--hhhhhhhhhhh----hhhhhh---hhccccceeeeecc
Q psy1486          51 MCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETS  119 (154)
Q Consensus        51 ~cll~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~--G~~~--g~~W~~~rF~~----pYLRd~---l~d~G~~~DT~ETA  119 (154)
                      .|++++.++|+++.|+.+.+.+.++|+++|+..+  .+.+  .+.|.. |+..    |+++..   .|..|=...+++++
T Consensus       350 ~~~l~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~  428 (560)
T 1e8g_A          350 RWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPI  428 (560)
T ss_dssp             SEEEEEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBE
T ss_pred             ceEEEEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeee
Confidence            3889999999999999999999999999998533  3222  345554 7654    877754   23332235668999


Q ss_pred             ccc--CChHHHHHHHHHHHH
Q psy1486         120 VPW--DKTVLLCINVKKRLT  137 (154)
Q Consensus       120 ~~W--s~l~~l~~~V~~al~  137 (154)
                      +||  ++++++++.+++.+.
T Consensus       429 vP~~~~~l~~~~~~~~~~~~  448 (560)
T 1e8g_A          429 AKVSGEDAMMQYAVTKKRCQ  448 (560)
T ss_dssp             ECSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHH
Confidence            999  999999999976543

>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*

Probab=96.11  E-value=0.0013  Score=57.71  Aligned_cols=75  Identities=5%  Similarity=-0.107  Sum_probs=57.4

Q ss_pred             ceEEEEEE-----eC-ChHHhHhHHHHHHHHHHHhCCCCCCCc----------chhhhhhhhhhhhhhhhhhhcccccee
Q psy1486          51 MCAATVLF-----EG-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIGD  114 (154)
Q Consensus        51 ~cll~~gf-----EG-~~~~V~~~~~~~~~i~~~~GG~~~G~~----------~g~~W~~~rF~~pYLRd~l~d~G~~~D  114 (154)
                      .|++++.|     +| ++++|+.+.+.+.++++.+||....+.          ....|...++..|.+..     .    
T Consensus       311 ~~~llve~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~----  381 (524)
T 2exr_A          311 SVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P----  381 (524)
T ss_dssp             SEEEEEEEEEEECTTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C----
T ss_pred             cEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C----
Confidence            48888888     89 788899999999999999999755532          22347766665554432     1    


Q ss_pred             eeecccccCChHHHHHHHHH
Q psy1486         115 SFETSVPWDKTVLLCINVKK  134 (154)
Q Consensus       115 T~ETA~~Ws~l~~l~~~V~~  134 (154)
                      ++++++|||++++++++|++
T Consensus       382 ~~Dv~VP~s~l~~~~~~v~~  401 (524)
T 2exr_A          382 WLNLFVSKRDIGDFNRTVFK  401 (524)
T ss_dssp             CEEEEEEHHHHHHHHHHCCC
T ss_pred             eeEEEECHHHHHHHHHHHHH
Confidence            35999999999999998865

>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*

Probab=95.68  E-value=0.078  Score=46.14  Aligned_cols=84  Identities=11%  Similarity=-0.118  Sum_probs=52.4

Q ss_pred             ceEEEEEEeCChHHhHhHHHHHHHHHHHhCCCCCCCcchhhhhhhhhhhhhhhhhhh--------------c--ccccee
Q psy1486          51 MCAATVLFEGDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFAC--------------D--YYFIGD  114 (154)
Q Consensus        51 ~cll~~gfEG~~~~V~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rF~~pYLRd~l~--------------d--~G~~~D  114 (154)
                      .+++++.|+|++++|+.+.+.+.++++++|+..+.   ...|.+ +-...++|..++              .  .+.+.+
T Consensus       319 ~~~l~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (520)
T 1wvf_A          319 AWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIV---TQEEAG-DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWF  394 (520)
T ss_dssp             SEEEEEEEEESHHHHHHHHHHHHHHHHHHTCCEEE---EHHHHT-TCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEE
T ss_pred             ceEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEEE---ecccch-hhhHHHHHHHhhccCchhhhhccccccCCCceEEe
Confidence            37888889999999999999999999999985432   111211 112223333222              0  122333


Q ss_pred             eeecccccCChHHHHHHHHHHHHH
Q psy1486         115 SFETSVPWDKTVLLCINVKKRLTR  138 (154)
Q Consensus       115 T~ETA~~Ws~l~~l~~~V~~al~~  138 (154)
                      +.-..++|++++++++.+++.+.+
T Consensus       395 d~~vp~~~~~l~~~~~~~~~~~~~  418 (520)
T 1wvf_A          395 APVSEARGSECKKQAAMAKRVLHK  418 (520)
T ss_dssp             CBEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHH
Confidence            334455669999999888665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	154
d1wvfa1	279	d.58.32.1 (A:243-521) Flavoprotein subunit of p-cr	6e-10

>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 279

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

 Score = 53.6 bits (128), Expect = 6e-10
 Identities = 13/129 (10%), Positives = 29/129 (22%), Gaps = 9/129 (6%)

Query: 1   RCQPSSIRLVDNVQLKAGQFFRPDPGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEG 60
              P+S+ +   +               E          + ++                G
Sbjct: 30  NTIPNSVVIASTLWEAGSAHLTRAQYTTE--PGHTPDSVIKQMQKDTGMGAWNLYAALYG 87

Query: 61  DPEDVKNNEDKIYSIAKRYGGI-------PAGESNGRRGYMLTYIIAYIRDFACDYYFIG 113
             E V  N   +  + K+ G                +    L   +  +++F    +  G
Sbjct: 88  TQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGG 147

Query: 114 DSFETSVPW 122
                  P 
Sbjct: 148 GGSMWFAPV 156

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	154
d1wvfa1	279	Flavoprotein subunit of p-cresol methylhydroxylase	98.7
d1e8ga1	287	Vanillyl-alcohol oxidase {Fungus (Penicillium simp	97.91

>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Flavoprotein subunit of p-cresol methylhydroxylase
species: Pseudomonas putida [TaxId: 303]

Probab=98.70  E-value=4.8e-08  Score=76.81  Aligned_cols=139  Identities=13%  Similarity=0.030  Sum_probs=88.4

Q ss_pred             CCCCceeEeechhhhhhcccCCCC-----CCchhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHH
Q psy1486           1 RCQPSSIRLVDNVQLKAGQFFRPD-----PGYLELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSI   75 (154)
Q Consensus         1 ~l~Pa~~RLsD~~Et~~~lal~~~-----~~~~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i   75 (154)
                      |+.|++++++|+..........+.     .+.+.   ......++. ..  + ...|.+++.++|++++|+.+.+++.+|
T Consensus        30 gi~p~~~e~~d~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~l~~-~~--~-~~~w~l~~~l~G~~~~v~~~~~~i~~i  102 (279)
T d1wvfa1          30 NTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTP---DSVIKQMQK-DT--G-MGAWNLYAALYGTQEQVDVNWKIVTDV  102 (279)
T ss_dssp             TSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCC---HHHHHHHHH-HH--C-CCSEEEEEEEEESHHHHHHHHHHHHHH
T ss_pred             CCCcceeEecCHHHHHHHHhccccccccCCCCCC---HHHHHHHHH-Hh--C-CCceeEEEEeecCHHHHHHHHHHHHHH
Confidence            578999999999988765554422     11110   011111221 11  1 134899999999999999999999999


Q ss_pred             HHHhCCCCC---CCcch-hhhhh---hhhhhhhhhhhhhcc-----ccceeeeecccccCChHHHHHHHHHHHHHHHhcc
Q psy1486          76 AKRYGGIPA---GESNG-RRGYM---LTYIIAYIRDFACDY-----YFIGDSFETSVPWDKTVLLCINVKKRLTRECTGR  143 (154)
Q Consensus        76 ~~~~GG~~~---G~~~g-~~W~~---~rF~~pYLRd~l~d~-----G~~~DT~ETA~~Ws~l~~l~~~V~~al~~~~~~~  143 (154)
                      ++++||..+   .+... +.|..   ..+..|+++.+.+.+     |.+..+-.++++||+++++++.+++.+    +++
T Consensus       103 ~~~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~~~s~l~~~~~~~~~~~----~~~  178 (279)
T d1wvfa1         103 FKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWFAPVSEARGSECKKQAAMAKRVL----HKY  178 (279)
T ss_dssp             HHHHTCCEEEEHHHHTTCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEECBEEESCHHHHHHHHHHHHHHH----HHT
T ss_pred             HHHCCCceEEeCCCHHHHHHHHHHHHhhhhhhhhhhhhHhhcCCCCCcceeeeeecCCHHHHHHHHHHHHHHH----HHh
Confidence            999999654   11111 22322   224557777765544     455556678889999999998875544    445


Q ss_pred             CCCcEEE
Q psy1486         144 WLPVLVK  150 (154)
Q Consensus       144 g~~~~v~  150 (154)
                      |.+..++
T Consensus       179 g~~~~~~  185 (279)
T d1wvfa1         179 GLDYVAE  185 (279)
T ss_dssp             TCCCCEE
T ss_pred             CCCeEEE
Confidence            6555443

>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Vanillyl-alcohol oxidase-like
domain: Vanillyl-alcohol oxidase
species: Fungus (Penicillium simplicissimum) [TaxId: 69488]

Probab=97.91  E-value=2.5e-05  Score=60.74  Aligned_cols=136  Identities=7%  Similarity=-0.185  Sum_probs=82.0

Q ss_pred             CCCCceeEeechhhhhhcccCCC----CCCc-hhHhhhhhhhhhhhhhcCCCCCCceEEEEEEeCChHHhHhHHHHHHHH
Q psy1486           1 RCQPSSIRLVDNVQLKAGQFFRP----DPGY-LELLTDGLKKLYVTKILGFRDDEMCAATVLFEGDPEDVKNNEDKIYSI   75 (154)
Q Consensus         1 ~l~Pa~~RLsD~~Et~~~lal~~----~~~~-~~~~~~~~~~~~l~~~rg~~~~~~cll~~gfEG~~~~V~~~~~~~~~i   75 (154)
                      ++.|++++++|+...........    ..+. -...++.     +....|.   ..+.+.+.++|+++.|+.+.+.+.++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~---~~~~~~~~l~G~~~~v~~~~~~i~~~  101 (287)
T d1e8ga1          30 MALQNVPTIRHILLDAAVLGDKRSYSSRTEPLSDEELDK-----IAKQLNL---GRWNFYGALYGPEPIRRVLWETIKDA  101 (287)
T ss_dssp             TSSCSCCEEEEHHHHHHHHCCGGGTCCCSSCCCHHHHHH-----HHHHHTC---CSEEEEEEEESCHHHHHHHHHHHHHH
T ss_pred             cCCcceEEEecchHHHHHHHhHHHHhhcCCCCCHHHHHH-----HHHhcCc---chhheeeecccCHHHHHHHHHHHHHH
Confidence            35788999999887653322221    1111 1111111     1212222   24788999999999999999999999


Q ss_pred             HHHhCCCCC-----CCcchhhhhhhhhh------hhhhhhhhhccccceeeeecccccCC-hHHHHHHHHHHHHHHHhcc
Q psy1486          76 AKRYGGIPA-----GESNGRRGYMLTYI------IAYIRDFACDYYFIGDSFETSVPWDK-TVLLCINVKKRLTRECTGR  143 (154)
Q Consensus        76 ~~~~GG~~~-----G~~~g~~W~~~rF~------~pYLRd~l~d~G~~~DT~ETA~~Ws~-l~~l~~~V~~al~~~~~~~  143 (154)
                      ++++||..+     .+....-|...++.      .++..+...+.+...++.++++++++ ++++++.+    ++.+++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~~~~~----~~~~~~~  177 (287)
T d1e8ga1         102 FSAIPGVKFYFPEDTPENSVLRVRDKTMQGIPTYDELKWIDWLPNGAHLFFSPIAKVSGEDAMMQYAVT----KKRCQEA  177 (287)
T ss_dssp             HTTSTTCEEECGGGSCTTCHHHHHHHHTTTCCCCGGGGGGGGSTTEEEEEECBEECSSHHHHHHHHHHH----HHHHHHH
T ss_pred             HHHcCCcEEEecCCHHHHHHHHHHHHHhHhhhhhhhhhHHhhcCCCCeeeeeceeccChHHHHHHHHHH----HHHHHHc
Confidence            999999643     11222234333322      23444445566777888899999875 77777665    4444454


Q ss_pred             CCCcE
Q psy1486         144 WLPVL  148 (154)
Q Consensus       144 g~~~~  148 (154)
                      |.+..
T Consensus       178 g~~~~  182 (287)
T d1e8ga1         178 GLDFI  182 (287)
T ss_dssp             TCCCC
T ss_pred             CCCeE
Confidence            55443