Psyllid ID: psy15206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
PYTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVPV
Secondary Structure (PSIPRED)
cccccEEEEEcccEEEcccccEEEEEccccEEEEEEEccccccEEEEEEccccccEEEEEEEccccEEEEEcccEEEEcccccEEEEccccEEEEEEEcEEcccEEEEEEccccccccccEEEEccEEEEccccccccEEEEEEEEccccccEEEEEEEEEEcccEEEEcccEEEEEccccEEEEEEEEEEccccEEEEEccEEccccccEEEEEccccccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEccccEEccccccEEEEEccEEEEEEEEccccccEEEEEEcccEcccEEEEEEEcccccEEEccccEEEcccccEEEEEccEEEEEEEEccccccEEEEEEcccEcccccEEEEcccEEEEEEEEEccccEEEEEEEEcccccEEEEEEEEEEcccEEEcccccEEEEEccEEEEEEEEccccccEEEEEEcccEccccccEEEEEEEEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
pytspesqvdtppvilnnstqlsvakegqsvqlechaeghpiptisWRRNFKRLGRLhlaipytspeaqvdtppvilnnspqlsvakegqsvqlechaeghpiptiswrrennailpngqtiftgstlqipritkedrgaYYCVAqngigrgarrkievkvefapivtvqstrigqalhhdmdldchieayphpilywakdgeivvndeyhsisnfgtsegttgslqckvpv
Flexible Loop (DISEMBL)
pytspesqvdtppvilnNSTQLSVAKEGQSVQLECHAeghpiptiswrRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILpngqtiftgstlqipritkedrGAYYCVAqngigrgarrkiEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISnfgtsegttgslqckvpv
Low Complexity Region (SEG)
PYTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVPV
Disordered region (IsUnstruct)
*******************************QLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSP*********I****************QLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNF****************
Disordered Region (DISOPRED)
*YTSPESQVDTPPVILNNST*****KEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL******FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV*************EGTTGSLQCKVPV
Disordered Region (DISEMBL)
**********TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVPV
Disordered Region (DISPRO)
*YTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVPV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
PYTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.702	0.467	0.528	7e-51
Q24372	359	Lachesin OS=Drosophila me	yes	N/A	0.456	0.295	0.564	2e-49
P15364	333	Protein amalgam OS=Drosop	no	N/A	0.469	0.327	0.435	1e-34
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	yes	N/A	0.810	0.033	0.302	7e-16
A2AJ76	5100	Hemicentin-2 OS=Mus muscu	no	N/A	0.931	0.042	0.282	8e-16
Q7ZW34	1056	Contactin-5 OS=Danio reri	no	N/A	0.762	0.167	0.291	4e-15
Q92859	1461	Neogenin OS=Homo sapiens	no	N/A	0.831	0.132	0.281	1e-14
Q3UQ28	1475	Peroxidasin homolog OS=Mu	no	N/A	0.840	0.132	0.269	2e-14
Q03696	1266	Neuronal-glial cell adhes	no	N/A	0.543	0.099	0.398	3e-14
A1KZ92	1463	Peroxidasin-like protein	no	N/A	0.780	0.123	0.275	3e-14

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score =  200 bits (508), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 93/176 (52%), Positives = 125/176 (71%), Gaps = 13/176 (7%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
           + QV  PPVI +NS +  V  EGQ+V+LEC+A G+P P +SWRRENNAILP G +I+ G+
Sbjct: 125 DLQVRRPPVISDNSTRSLVVSEGQAVRLECYAGGYPAPRVSWRRENNAILPTGGSIYRGN 184

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
            L+I RI KEDRG YYCVA+NG+G+GARR I V+VEF P++TV   R+GQAL +DMDL+C
Sbjct: 185 VLKISRIGKEDRGTYYCVAENGVGKGARRNIAVEVEFPPVITVPRPRLGQALQYDMDLEC 244

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTT-------------GSLQCK 229
           H+EAYP P + W KD  ++ N++++SIS+F T++  T             G  QCK
Sbjct: 245 HVEAYPPPAITWLKDETVLSNNQHYSISHFATADEFTDTTRVITIEKRQYGKYQCK 300

May play a role in early neuronal differentiation and axon outgrowth.
Schistocerca americana (taxid: 7009)

>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 88/156 (56%), Positives = 114/156 (73%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQ 129
           V  PPVI +NS Q  VA EG  VQ+EC+A G+P PTI+WRRENNAILP     + G+TL+
Sbjct: 131 VRRPPVISDNSTQSVVASEGSEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLR 190

Query: 130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIE 189
           I  + KEDRG YYCVA NG+ +G RR I V+VEFAP++TV   R+GQAL +DMDL+CHIE
Sbjct: 191 IKSVKKEDRGTYYCVADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHIE 250

Query: 190 AYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
           AYP P + W KD   + N++++SIS+F T++  T S
Sbjct: 251 AYPPPAIVWTKDDIQLANNQHYSISHFATADEYTDS 286

Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth.

Drosophila melanogaster (taxid: 7227)

>sp|P15364|AMAL_DROME Protein amalgam OS=Drosophila melanogaster GN=Ama PE=2 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 97/147 (65%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTL 128
           Q+ TPPVI  N+P+ ++  EGQ+++L CHA G P PTISW RE+NA++P G  +    TL
Sbjct: 134 QIKTPPVIAENTPKSTLVTEGQNLELTCHANGFPKPTISWAREHNAVMPAGGHLLAEPTL 193

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHI 188
           +I  + + DRG YYC+AQNG G+  +R I V+VEF P + VQ  +I Q + H  +L+C +
Sbjct: 194 RIRSVHRMDRGGYYCIAQNGEGQPDKRLIRVEVEFRPQIAVQRPKIAQMVSHSAELECSV 253

Query: 189 EAYPHPILYWAKDGEIVVNDEYHSISN 215
           + YP P + W K+G  + +  +H ++N
Sbjct: 254 QGYPAPTVVWHKNGVPLQSSRHHEVAN 280

Drosophila melanogaster (taxid: 7227)

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 99/238 (41%), Gaps = 50/238 (21%)

Query: 9    VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-------------- 54
            V  PP I +  T   V K   +V + C A G P P+I W +N  RL              
Sbjct: 3893 VQVPPSIADEPTDFLVTKHAPAV-ITCTASGVPFPSIHWTKNGIRLLPRGDGYRILSSGA 3951

Query: 55   -----GRLHLAIPYTSPE------------AQVDTPPVILNNSPQLSVAKEGQSVQLECH 97
                  +L+ A  YT                 V  PPVI     +L V      + L C 
Sbjct: 3952 IEILATQLNHAGRYTCVARNAAGSAHRHVTLHVHEPPVIQPQPSELHVILN-NPILLPCE 4010

Query: 98   AEGHPIPTISWRRE---------NNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148
            A G P P I+W++E         N+A+LP+G        LQI R  +ED G Y CVAQN 
Sbjct: 4011 ATGTPSPFITWQKEGINVNTSGRNHAVLPSGG-------LQISRAVREDAGTYMCVAQNP 4063

Query: 149  IGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV 206
             G  A  KI++ V+  P+++        A+   + L C  +  P P + W KDG  +V
Sbjct: 4064 AGT-ALGKIKLNVQVPPVISPHLKEYVIAVDKPITLSCEADGLPPPDITWHKDGRAIV 4120

Homo sapiens (taxid: 9606)

>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1

 Score = 84.0 bits (206), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/262 (28%), Positives = 110/262 (41%), Gaps = 46/262 (17%)

Query: 6    ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRR-----------NFKRL 54
            E  V  PP I   ST   V  EG    L C A G P P I+W +           +  R 
Sbjct: 966  ELVVQVPPRIHPTSTH-HVTNEGVPASLPCIASGVPTPKITWTKETNALTTSGHYSVSRN 1024

Query: 55   GRLHLAIP-----------------YTSPEA--QVDTPPVI-LNNSPQLSV-----AKEG 89
            G L +  P                 ++S E    V+T P+I +N S  + V      K G
Sbjct: 1025 GTLVIVQPSPQDAGAYVCTATNSVGFSSQEMWLSVNTKPMIKMNGSQAVDVPLRVTVKAG 1084

Query: 90   QSVQLECHAEGHPIPTISWRRENNAILP--NGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
            + V L+C A+G P P ++W ++ N +LP  N   +    +L++ +    D G Y C A N
Sbjct: 1085 EEVTLDCEAQGSPTPLLTWTKDANPLLPVTNRYELLPSGSLRLAQAQVGDNGLYGCTASN 1144

Query: 148  GIGRGARR---KIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI 204
              G  +RR   +++V  +  P   V     G+AL    DL+C  E  P P L W KDG  
Sbjct: 1145 PAGATSRRYVLRVQVPPQVQPGPRVLKVLAGEAL----DLNCVAEGNPQPQLNWFKDGMA 1200

Query: 205  VVNDEYHSISNFGTSEGTTGSL 226
            ++ +      +F   + +   L
Sbjct: 1201 LMGEGAQGSVHFAAVKTSDAGL 1222

Mus musculus (taxid: 10090)

>sp|Q7ZW34|CNTN5_DANRE Contactin-5 OS=Danio rerio GN=cntn5 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 91/213 (42%), Gaps = 36/213 (16%)

Query: 21  QLSVAKEGQSVQLECHAEGHPIPTISWRR---NFKRLGRLH-----LAIPYTSPE----- 67
           Q  +A +G +V+LEC A G+P+PTI+WR+   N  +  RL      L IP    E     
Sbjct: 266 QTVLAAKGVTVRLECFALGNPVPTITWRKMSGNIPKKARLRKSQAVLEIPNIQLEDSGSY 325

Query: 68  ----------------AQVDTPP--VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWR 109
                            QV T P  + + N  QL     G+ ++ EC A G P PT  W 
Sbjct: 326 ECKAENTRGGTAFRGHLQVYTLPQWISMINDTQLD---SGEQLRWECRATGKPRPTYRWL 382

Query: 110 RENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV-EFAPIVT 168
           R    +    +       L I R+ + D G Y C+A+N  G       E+K+   AP+  
Sbjct: 383 RNGEPLSTQSRVEMVNGELTIHRLQQADSGMYQCIAENKYG-AIYSSAELKILASAPMFN 441

Query: 169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD 201
               R+   +  D+ L+C   A P P + W K+
Sbjct: 442 NNPVRLIATVGKDVSLECRPRASPKPRISWRKN 474

Contactins mediate cell surface interactions during nervous system development.

Danio rerio (taxid: 7955)

>sp|Q92859|NEO1_HUMAN Neogenin OS=Homo sapiens GN=NEO1 PE=1 SV=2

 Score = 80.5 bits (197), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 91/217 (41%), Gaps = 24/217 (11%)

Query: 22  LSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNN-S 80
           +S A EG      C  E    P  S     K L           P+ +V +  V L   S
Sbjct: 208 ISNATEGDGGLYRCVVESGGPPKYSDEVELKVL-----------PDPEVISDLVFLKQPS 256

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---TIFTGSTLQIPRITKED 137
           P + V   GQ V L C A G P PTI W +   A+         +  G +L+I  +T++D
Sbjct: 257 PLVRVI--GQDVVLPCVASGLPTPTIKWMKNEEALDTESSERLVLLAGGSLEISDVTEDD 314

Query: 138 RGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY 197
            G Y+C+A NG       + E+ V+  P    Q T I      D+  +C +   P P + 
Sbjct: 315 AGTYFCIADNG-NETIEAQAELTVQAQPEFLKQPTNIYAHESMDIVFECEVTGKPTPTVK 373

Query: 198 WAKDGEIVVNDEY------HSISNFGTSEGTTGSLQC 228
           W K+G++V+  +Y      H++   G  +   G  QC
Sbjct: 374 WVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQC 410

May be involved as a regulatory protein in the transition of undifferentiated proliferating cells to their differentiated state. May also function as a cell adhesion molecule in a broad spectrum of embryonic and adult tissues.

Homo sapiens (taxid: 9606)

>sp|Q3UQ28|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/245 (26%), Positives = 110/245 (44%), Gaps = 50/245 (20%)

Query: 28  GQSVQLECHAEGHPIPTISWRR------------NFKRLGRLHL------------AIPY 63
           G+SV LEC A GHP+P I+W R            N    G L++                
Sbjct: 353 GESVTLECSATGHPLPQITWTRGDRTPLPIDPRVNITPSGGLYIQNVAQSDSGEYTCFAS 412

Query: 64  TSPEAQVDTPPVILNNSPQLSVAK------EGQSVQLECHAEGHPIPTISWRRENNAI-L 116
            S ++   T  +I+   PQ +V        EGQ+V  +C A+GHP P I+W +  + + +
Sbjct: 413 NSVDSIHATAFIIVQALPQFTVTPQSRVVIEGQTVDFQCAAKGHPQPVIAWTKGGSQLSV 472

Query: 117 PNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG---ARRKIEVKVE--FAPIVTVQS 171
                + +  TL+I  +   D+G Y C A N IG     A   ++ +V   FA I +  +
Sbjct: 473 DRRHLVLSSGTLRISGVALHDQGQYECQAVNIIGSQKVVAHLTVQPRVTPVFASIPSDMT 532

Query: 172 TRIGQALHHDMDLDCHIEAYPHPILYWAKDG-EIVVNDEYH-------SISNFGTSEGTT 223
             +G     ++ L C  +  P P + W KDG ++  + ++H       +I++ GT++   
Sbjct: 533 VEVGT----NVQLPCSSQGEPEPAITWNKDGVQVTESGKFHISPEGFLTINDVGTADA-- 586

Query: 224 GSLQC 228
           G  +C
Sbjct: 587 GRYEC 591

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system (By similarity). Plays a role in extracellular matrix formation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q03696|NGCA_CHICK Neuronal-glial cell adhesion molecule OS=Gallus gallus PE=1 SV=2

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 69/133 (51%), Gaps = 7/133 (5%)

Query: 73  PPVILNNSPQLS-VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIP 131
           P ++L   PQ + +A  G SV LEC AEG P P + WRR N  +LP G   F   TL++ 
Sbjct: 236 PRLLLPRDPQTTTIALRGGSVVLECIAEGLPTPWVRWRRLNGPLLPGGVGNFN-KTLRLW 294

Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP--IVTVQSTRIGQALHHDMDLDCHIE 189
            +T+ D G Y CVA+NG G  AR    V VE AP  +   QS   G        LDC + 
Sbjct: 295 GVTESDDGEYECVAENGRGT-ARGTHSVTVEAAPYWVRRPQSGVFGPG--ETARLDCEVG 351

Query: 190 AYPHPILYWAKDG 202
             P P + W+ +G
Sbjct: 352 GKPRPQIQWSING 364

Mediates the adhesion of neurons to neurons and neurons to glia. It is involved in neuronal migration, neurite fasciculation and outgrowth.

Gallus gallus (taxid: 9031)

>sp|A1KZ92|PXDNL_HUMAN Peroxidasin-like protein OS=Homo sapiens GN=PXDNL PE=1 SV=3

 Score = 78.6 bits (192), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 37/218 (16%)

Query: 28  GQSVQLECHAEGHPIPTISWRRN--FKRLGRLHLAIP---YTSPEAQVD----------- 71
           G S  LEC A GHP P I+W R+   +  G  H+A     Y     Q D           
Sbjct: 344 GTSTTLECMATGHPHPLITWTRDNGLELDGSRHVATSSGLYLQNITQRDHGRFTCHANNS 403

Query: 72  ------TPPVILNNSPQLSVAKEGQ------SVQLECHAEGHPIPTISWRRENNAILPNG 119
                    +I+   PQ +V  + Q      +V+  C A+G+P P I W +    +   G
Sbjct: 404 HGTVQAAANIIVQAPPQFTVTPKDQVVLEEHAVEWLCEADGNPPPVIVWTKTGGQLPVEG 463

Query: 120 Q-TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQ-- 176
           Q T+ +  TL+I R  + D+G Y C A + +G    +K+ V++   P      T++ Q  
Sbjct: 464 QHTVLSSGTLRIDRAAQHDQGQYECQAVSSLG---VKKVSVQLTVKPKALAVFTQLPQDT 520

Query: 177 --ALHHDMDLDCHIEAYPHPILYWAKDG-EIVVNDEYH 211
              +  ++++ CH +  P PI+ W K+G +I  + ++H
Sbjct: 521 SVEVGKNINISCHAQGEPQPIITWNKEGVQITESGKFH 558

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
383865563	363	PREDICTED: lachesin-like [Megachile rotu	0.478	0.305	0.578	2e-50
322789174	346	hypothetical protein SINV_07303 [Solenop	0.443	0.297	0.572	3e-49
3024084	349	RecName: Full=Lachesin; Flags: Precursor	0.702	0.467	0.528	4e-49
340722954	363	PREDICTED: lachesin-like [Bombus terrest	0.478	0.305	0.572	5e-49
110761725	363	PREDICTED: lachesin-like [Apis mellifera	0.478	0.305	0.578	5e-49
380022768	363	PREDICTED: lachesin-like [Apis florea]	0.478	0.305	0.578	6e-49
189238127	364	PREDICTED: similar to lachesin [Triboliu	0.487	0.310	0.566	1e-48
242012463	344	lachesin precursor, putative [Pediculus	0.465	0.313	0.553	3e-48
307181503	372	Lachesin [Camponotus floridanus]	0.443	0.276	0.572	5e-48
193610957	361	PREDICTED: lachesin-like [Acyrthosiphon	0.474	0.304	0.564	5e-48

>gi|383865563|ref|XP_003708242.1| PREDICTED: lachesin-like [Megachile rotundata]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 121/159 (76%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
           E QV  PP+I +NS +  V  EGQ VQLEC+A G P P ISWRRENNAILP G +I+ G+
Sbjct: 125 ELQVRRPPIISDNSTRSLVVSEGQPVQLECYAGGFPAPRISWRRENNAILPTGGSIYRGN 184

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
           TL+IP I KEDRG YYCVA+NG+GRGARR I V+VEFAP+++    R+GQAL +DMDL+C
Sbjct: 185 TLKIPAIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVISAPRPRLGQALQYDMDLEC 244

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
           H+EAYP P + W KD  ++ N++++SIS+F T++  T +
Sbjct: 245 HVEAYPPPAITWFKDSNVLSNNQHYSISHFATADQYTDT 283

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789174|gb|EFZ14560.1| hypothetical protein SINV_07303 [Solenopsis invicta]

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 119/159 (74%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
           E QV  PP+I +NS Q  V  EGQ V LEC+A G+P P ISWRRENNAILP G +I+ G+
Sbjct: 109 ELQVRRPPIISDNSTQSLVVSEGQPVLLECYANGYPTPRISWRRENNAILPTGGSIYRGT 168

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
           TL+I  I KEDRG YYC+A+NG+GRGARR I V+VEFAP++T    R+GQAL +DMDL+C
Sbjct: 169 TLKISSIRKEDRGTYYCIAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLEC 228

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
           H+EAYP P + W KD   + N++++SIS+F T++  T +
Sbjct: 229 HVEAYPPPAIIWLKDDIQLSNNQHYSISHFATADEYTDT 267

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|3024084|sp|Q26474.1|LACH_SCHAM RecName: Full=Lachesin; Flags: Precursor gi|294841|gb|AAC37185.1| lachesin [Schistocerca americana]

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 93/176 (52%), Positives = 125/176 (71%), Gaps = 13/176 (7%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
           + QV  PPVI +NS +  V  EGQ+V+LEC+A G+P P +SWRRENNAILP G +I+ G+
Sbjct: 125 DLQVRRPPVISDNSTRSLVVSEGQAVRLECYAGGYPAPRVSWRRENNAILPTGGSIYRGN 184

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
            L+I RI KEDRG YYCVA+NG+G+GARR I V+VEF P++TV   R+GQAL +DMDL+C
Sbjct: 185 VLKISRIGKEDRGTYYCVAENGVGKGARRNIAVEVEFPPVITVPRPRLGQALQYDMDLEC 244

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTT-------------GSLQCK 229
           H+EAYP P + W KD  ++ N++++SIS+F T++  T             G  QCK
Sbjct: 245 HVEAYPPPAITWLKDETVLSNNQHYSISHFATADEFTDTTRVITIEKRQYGKYQCK 300

Source: Schistocerca americana

Species: Schistocerca americana

Genus: Schistocerca

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722954|ref|XP_003399864.1| PREDICTED: lachesin-like [Bombus terrestris] gi|350403675|ref|XP_003486872.1| PREDICTED: lachesin-like [Bombus impatiens]

 Score =  200 bits (508), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 119/159 (74%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
           E QV  PP+I +NS +  V  EGQ VQL+C+A G P P ISWRRENNAILP G +I+ G+
Sbjct: 125 ELQVRRPPIISDNSTRALVVTEGQPVQLDCYAGGFPTPRISWRRENNAILPTGGSIYRGN 184

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
           TL+I  I KEDRG YYCVA+NG+GRGARR I V+VEFAP++T    R+GQAL +DMDL+C
Sbjct: 185 TLKISTIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLEC 244

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
           H+EAYP P + W KD   + N++++SIS+F T++  T +
Sbjct: 245 HVEAYPPPAIVWLKDDVQLSNNQHYSISHFATADQYTDT 283

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110761725|ref|XP_397471.3| PREDICTED: lachesin-like [Apis mellifera]

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 119/159 (74%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
           E QV  PP+I +NS +  V  EGQ VQLEC+A G P P ISWRRENNAILP G +I+ G+
Sbjct: 125 ELQVRRPPIISDNSTRSLVVTEGQPVQLECYAGGFPTPRISWRRENNAILPTGGSIYRGN 184

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
           TL+I  I KEDRG YYCVA+NG+GRGARR I V+VEFAP++T    R+GQAL +DMDL+C
Sbjct: 185 TLKISTIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLEC 244

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
           H+EAYP P + W KD   + N++++SIS+F T++  T +
Sbjct: 245 HVEAYPPPAIVWLKDDIQLSNNQHYSISHFATADQYTDT 283

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022768|ref|XP_003695209.1| PREDICTED: lachesin-like [Apis florea]

 Score =  199 bits (507), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 119/159 (74%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
           E QV  PP+I +NS +  V  EGQ VQLEC+A G P P ISWRRENNAILP G +I+ G+
Sbjct: 125 ELQVRRPPIISDNSTRSLVVTEGQPVQLECYAGGFPTPRISWRRENNAILPTGGSIYRGN 184

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
           TL+I  I KEDRG YYCVA+NG+GRGARR I V+VEFAP++T    R+GQAL +DMDL+C
Sbjct: 185 TLKISTIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLEC 244

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
           H+EAYP P + W KD   + N++++SIS+F T++  T +
Sbjct: 245 HVEAYPPPAIVWLKDDIQLSNNQHYSISHFATADQYTDT 283

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238127|ref|XP_001814833.1| PREDICTED: similar to lachesin [Tribolium castaneum] gi|270008732|gb|EFA05180.1| hypothetical protein TcasGA2_TC015310 [Tribolium castaneum]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 90/159 (56%), Positives = 120/159 (75%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
           E QV  PP I +NS +  V  EGQ+VQ+EC+A G+P P ISWRRENNAILP G +I+ G+
Sbjct: 128 ELQVRRPPFISDNSTRSVVVSEGQAVQMECYAGGYPPPRISWRRENNAILPTGGSIYRGN 187

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
            ++I +I KEDRG YYCVA+NG+GRG +R I V+VEFAP+VTV   R+GQAL +DMDL+C
Sbjct: 188 VMKIKQIKKEDRGTYYCVAENGVGRGTKRNIAVEVEFAPVVTVPRPRLGQALQYDMDLEC 247

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
           H+EAYP P L W KD   + N++++SIS+F T++  T +
Sbjct: 248 HVEAYPPPALTWVKDEVALSNNQHYSISHFATADEFTDT 286

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242012463|ref|XP_002426952.1| lachesin precursor, putative [Pediculus humanus corporis] gi|212511181|gb|EEB14214.1| lachesin precursor, putative [Pediculus humanus corporis]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 88/159 (55%), Positives = 119/159 (74%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
           + QV  PP+I +NS +  V  EGQSV LEC+A G+P P ISWRRENNA+LP G  I+ G+
Sbjct: 111 DLQVRRPPIISDNSTRSLVVSEGQSVNLECYAGGYPAPRISWRRENNAVLPTGGAIYKGN 170

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
            L+I  + KEDRG YYCVA+NG+GRGARR I V+VEF P++TV   R+GQA+ +DMDL+C
Sbjct: 171 VLKIASVKKEDRGTYYCVAENGVGRGARRNIGVEVEFKPVITVPRPRLGQAVQYDMDLEC 230

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
           H+EAYP P + W KDG  + N++++SIS+F T++  T +
Sbjct: 231 HVEAYPPPAIVWLKDGVQLSNNQHYSISHFATADEYTDT 269

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181503|gb|EFN69091.1| Lachesin [Camponotus floridanus]

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 91/159 (57%), Positives = 117/159 (73%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
           E QV  PP+I +NS Q  V  EGQ V LEC+A G P   ISWRRENNAILP G +I+ G+
Sbjct: 125 ELQVRRPPIISDNSTQSLVVSEGQPVMLECYASGFPPARISWRRENNAILPTGGSIYRGN 184

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
           TL+I  I KEDRG YYCVA+NG+GRGARR I V+VEFAP++T    R+GQAL +DMDL+C
Sbjct: 185 TLKISAIRKEDRGTYYCVAENGVGRGARRNINVEVEFAPVITAPRPRLGQALQYDMDLEC 244

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
           H+EAYP P + W KD   + N++++SIS+F T++  T +
Sbjct: 245 HVEAYPPPAITWVKDDVQLSNNQHYSISHFATADEYTDT 283

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193610957|ref|XP_001945161.1| PREDICTED: lachesin-like [Acyrthosiphon pisum]

 Score =  196 bits (499), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 87/154 (56%), Positives = 118/154 (76%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
           E +V  PP+I +NS +  V  EGQ V+LEC+A G P P +SWRRENNAILP G +I+ G+
Sbjct: 125 ELEVRRPPIISDNSTRSLVVNEGQPVKLECYAGGFPSPRVSWRRENNAILPTGGSIYRGN 184

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
            L+IP ITKEDRG YYCVA+NG+GRGARR I ++VEFAP++TV   R+GQAL +DMDL+C
Sbjct: 185 ILKIPAITKEDRGTYYCVAENGVGRGARRNIAIEVEFAPVITVPKPRLGQALQYDMDLEC 244

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE 220
           H+EAYP P + W  +G  + N++++ IS+F T++
Sbjct: 245 HVEAYPPPAIIWINNGIQLSNNQHYRISHFATAD 278

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
FB|FBgn0010238	359	Lac "Lachesin" [Drosophila mel	0.672	0.434	0.564	1.4e-46
FB|FBgn0000071	333	Ama "Amalgam" [Drosophila mela	0.681	0.474	0.436	9.4e-40
ZFIN|ZDB-GENE-041014-322	5616	hmcn1 "hemicentin 1" [Danio re	0.685	0.028	0.325	1.6e-20
UNIPROTKB|E1BE11	5588	HMCN1 "Uncharacterized protein	0.629	0.026	0.313	3.2e-20
UNIPROTKB|F1PXF9	5637	HMCN1 "Uncharacterized protein	0.629	0.025	0.32	3.3e-20
UNIPROTKB|Q96RW7	5635	HMCN1 "Hemicentin-1" [Homo sap	0.633	0.026	0.311	2.2e-19
ZFIN|ZDB-GENE-030131-9765	2925	hmcn2 "hemicentin 2" [Danio re	0.646	0.051	0.278	2e-18
UNIPROTKB|Q8UVD7	1614	robo1 "Roundabout-1" [Xenopus	0.642	0.092	0.294	1.3e-19
ZFIN|ZDB-GENE-000209-3	1675	robo1 "roundabout homolog 1" [	0.543	0.075	0.315	1.4e-19
UNIPROTKB|H9KZA3	5442	HMCN1 "Uncharacterized protein	0.594	0.025	0.330	1.6e-19

FB|FBgn0010238 Lac "Lachesin" [Drosophila melanogaster (taxid:7227)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 88/156 (56%), Positives = 114/156 (73%)

Query:    70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQ 129
             V  PPVI +NS Q  VA EG  VQ+EC+A G+P PTI+WRRENNAILP     + G+TL+
Sbjct:   131 VRRPPVISDNSTQSVVASEGSEVQMECYASGYPTPTITWRRENNAILPTDSATYVGNTLR 190

Query:   130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIE 189
             I  + KEDRG YYCVA NG+ +G RR I V+VEFAP++TV   R+GQAL +DMDL+CHIE
Sbjct:   191 IKSVKKEDRGTYYCVADNGVSKGDRRNINVEVEFAPVITVPRPRLGQALQYDMDLECHIE 250

Query:   190 AYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
             AYP P + W KD   + N++++SIS+F T++  T S
Sbjct:   251 AYPPPAIVWTKDDIQLANNQHYSISHFATADEYTDS 286

GO:0007409 "axonogenesis" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IEP;IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0005918 "septate junction" evidence=IDA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

FB|FBgn0000071 Ama "Amalgam" [Drosophila melanogaster (taxid:7227)]

 Score = 394 (143.8 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
 Identities = 69/158 (43%), Positives = 104/158 (65%)

Query:    69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTL 128
             Q+ TPPVI  N+P+ ++  EGQ+++L CHA G P PTISW RE+NA++P G  +    TL
Sbjct:   134 QIKTPPVIAENTPKSTLVTEGQNLELTCHANGFPKPTISWAREHNAVMPAGGHLLAEPTL 193

Query:   129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHI 188
             +I  + + DRG YYC+AQNG G+  +R I V+VEF P + VQ  +I Q + H  +L+C +
Sbjct:   194 RIRSVHRMDRGGYYCIAQNGEGQPDKRLIRVEVEFRPQIAVQRPKIAQMVSHSAELECSV 253

Query:   189 EAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSL 226
             + YP P + W K+G  + +  +H ++N  +S GTT S+
Sbjct:   254 QGYPAPTVVWHKNGVPLQSSRHHEVANTASSSGTTTSV 291

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0007155 "cell adhesion" evidence=NAS

GO:0003823 "antigen binding" evidence=NAS

ZFIN|ZDB-GENE-041014-322 hmcn1 "hemicentin 1" [Danio rerio (taxid:7955)]

 Score = 209 (78.6 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
 Identities = 55/169 (32%), Positives = 78/169 (46%)

Query:    70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGST 127
             V   PVI ++   L V      V L C A G P PTI+W++E   I   G   T+     
Sbjct:  3970 VHESPVIQSHPSTLDVILNNH-VTLPCRATGSPRPTITWQKEGINIFTTGGGFTVLPNGG 4028

Query:   128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCH 187
             LQI +   ED G Y CVAQN  G  A  K +++V+  P++T        AL   + L C+
Sbjct:  4029 LQISKAKVEDSGTYMCVAQNPAGT-ALGKTKLRVQVPPVITSDIRAYTVALDVSVTLQCN 4087

Query:   188 IEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE------GTTGSLQCKV 230
              E +P P + W KDG+++       + + G  +      G TG   C V
Sbjct:  4088 SEGFPTPSVSWHKDGQLLSESVRQRVLSTGALQIAFAQPGDTGRYTCTV 4136

GO:0005509 "calcium ion binding" evidence=IEA

GO:0033333 "fin development" evidence=IMP

GO:0071711 "basement membrane organization" evidence=IMP

GO:0033334 "fin morphogenesis" evidence=IMP

UNIPROTKB|E1BE11 HMCN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 200 (75.5 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
 Identities = 47/150 (31%), Positives = 72/150 (48%)

Query:    70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT--IFTGST 127
             V  PPVI     +L V      + L C A G P P I W++E  +++ +G++  +     
Sbjct:  3937 VQEPPVIQPQPSELDVILNNP-ILLPCEATGTPSPFIIWQKEGISVISSGRSHAVLPRGG 3995

Query:   128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCH 187
             LQI R  +ED G Y CVAQN  G  A  KI++ V+  P+++         +   + L C 
Sbjct:  3996 LQISRAVREDAGTYMCVAQNPAGT-ALGKIKLNVQVPPVISPHPKEYITVVDKPIMLPCK 4054

Query:   188 IEAYPHPILYWAKDGEIVVNDEYHSISNFG 217
              +  P P + W KDG ++V      I + G
Sbjct:  4055 ADGLPPPDIMWHKDGHVIVESVRQRILSSG 4084

GO:0030054 "cell junction" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1PXF9 HMCN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 204 (76.9 bits), Expect = 3.3e-20, Sum P(2) = 3.3e-20
 Identities = 48/150 (32%), Positives = 72/150 (48%)

Query:    70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT--IFTGST 127
             V  PPVI     +L V      + L C A G P P I+W++E   ++ +G++  +     
Sbjct:  3986 VQEPPVIQPQPSELDVIVNNP-ILLPCEATGTPSPFITWQKEGINVITSGKSHAVLPNGG 4044

Query:   128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCH 187
             LQI R  +ED G Y CVAQN  G  A  KI++ V+  P+++        A+   + L C 
Sbjct:  4045 LQISRAVREDAGTYMCVAQNPAGT-ALGKIKLNVQVPPVISPHPKEYITAVDKPISLPCE 4103

Query:   188 IEAYPHPILYWAKDGEIVVNDEYHSISNFG 217
              +  P P + W KDG  +V      I + G
Sbjct:  4104 ADGLPAPDITWHKDGHAIVESIRQRILSSG 4133

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|Q96RW7 HMCN1 "Hemicentin-1" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
 Identities = 47/151 (31%), Positives = 71/151 (47%)

Query:    70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT--IFTGST 127
             V  PPVI     +L V      + L C A G P P I+W++E   +  +G+   +     
Sbjct:  3984 VHEPPVIQPQPSELHVILNNP-ILLPCEATGTPSPFITWQKEGINVNTSGRNHAVLPSGG 4042

Query:   128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCH 187
             LQI R  +ED G Y CVAQN  G  A  KI++ V+  P+++        A+   + L C 
Sbjct:  4043 LQISRAVREDAGTYMCVAQNPAGT-ALGKIKLNVQVPPVISPHLKEYVIAVDKPITLSCE 4101

Query:   188 IEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
              +  P P + W KDG  +V      + + G+
Sbjct:  4102 ADGLPPPDITWHKDGRAIVESIRQRVLSSGS 4132

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0031012 "extracellular matrix" evidence=TAS

ZFIN|ZDB-GENE-030131-9765 hmcn2 "hemicentin 2" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 44/158 (27%), Positives = 74/158 (46%)

Query:    69 QVDTPPVILNNSPQLSVA-KEGQSVQLECHAEGHPIPTISWRRENNAILPNG----QTIF 123
             +V  PPVI   S    V    GQ V ++C   G P+P++ W  +   + PNG    + + 
Sbjct:   140 EVQAPPVISGTSGVQEVTIMAGQEVDMQCRVSGRPLPSVEWTHDGEVLSPNGDPHVEFLE 199

Query:   124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIV--TVQSTRIGQALHHD 181
              G  L++  +   DRG Y CVA N  G   R+   + ++ AP++  + + + +   L   
Sbjct:   200 KGQVLRVKSVRPRDRGLYQCVATNNAGTQTRQ-FRLTIQAAPLIRDSGEDSEVTVVLGFP 258

Query:   182 MDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
               L C +E  P P + W KD + +V+    + +  G S
Sbjct:   259 AVLHCEVEGIPLPTITWLKDNQPIVSSPQLTYTQGGQS 296

GO:0004888 "transmembrane signaling receptor activity" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0043589 "skin morphogenesis" evidence=IGI

GO:0090497 "mesenchymal cell migration" evidence=IGI

GO:0035122 "embryonic medial fin morphogenesis" evidence=IGI

GO:0030198 "extracellular matrix organization" evidence=IGI

UNIPROTKB|Q8UVD7 robo1 "Roundabout-1" [Xenopus laevis (taxid:8355)]

 Score = 184 (69.8 bits), Expect = 1.3e-19, Sum P(2) = 1.3e-19
 Identities = 46/156 (29%), Positives = 74/156 (47%)

Query:    74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRI 133
             P  L     ++V  +  SV+ +C A G P+PT+ WR+++  +  +   I    TL+I ++
Sbjct:   225 PSFLRRPSNMAVTVD-DSVEFKCEARGDPVPTVRWRKDDGDLPKSRYEIRDDHTLKIRKV 283

Query:   134 TKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH 193
             T  D G+Y CVA+N +G+ A     + V+  P   V+      AL   +   C     P 
Sbjct:   284 TAGDMGSYTCVAENMVGK-AEASAVLTVQEPPNFVVKPRDQVVALGRTVTFQCEATGNPQ 342

Query:   194 PILYWAKDGEIVVNDEYH---SISNFGTSEGTTGSL 226
             P ++W K+G   +   Y    S S F  S+  TG L
Sbjct:   343 PAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ--TGDL 376

GO:0007411 "axon guidance" evidence=IMP

GO:0030182 "neuron differentiation" evidence=IMP

ZFIN|ZDB-GENE-000209-3 robo1 "roundabout homolog 1" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 41/130 (31%), Positives = 63/130 (48%)

Query:    74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-TIFTGSTLQIPR 132
             P  L      SV  + QSV+  C A+G P+PTI WR+E+   LP G+  I+   TL++ R
Sbjct:   224 PSFLRKPSSQSVLVD-QSVEFRCEAQGDPVPTIRWRKEDGE-LPKGRYEIWEDHTLKLKR 281

Query:   133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP 192
             +T  D G Y C A+N +G+       + V   P+  V+       +   +   C     P
Sbjct:   282 LTSGDAGTYTCQAENMMGK-TEASATLTVHVPPVFVVRPRNQVAGMGRTVTFQCEATGSP 340

Query:   193 HPILYWAKDG 202
              P ++W K+G
Sbjct:   341 QPAIFWQKEG 350

GO:0003262 "endocardial progenitor cell migration to the midline involved in heart field formation" evidence=IGI

GO:0016021 "integral to membrane" evidence=IEA

GO:0007411 "axon guidance" evidence=IGI;IMP

UNIPROTKB|H9KZA3 HMCN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 195 (73.7 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
 Identities = 47/142 (33%), Positives = 68/142 (47%)

Query:    70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGST 127
             V   P I  +SPQ +V     SV LEC AEG P P I+WR++ N    N    +I    +
Sbjct:  3625 VHVAPTI-RSSPQTTVVHLNSSVVLECTAEGVPTPRIAWRKDGNVFNGNNTRYSILEDGS 3683

Query:   128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCH 187
             LQI      D G Y C+A N  G   R++I+++V   P +    T I   ++    L C 
Sbjct:  3684 LQIHSAHVTDTGRYLCMATNAAGT-ERKQIDLQVLVPPTIASGHTNITVTVNMQTTLPCE 3742

Query:   188 IEAYPHPILYWAKDGEIVVNDE 209
                 P P + W K+G ++  D+
Sbjct:  3743 ATGIPRPAVSWKKNGHLLSLDQ 3764

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005938 "cell cortex" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24372	LACH_DROME	No assigned EC number	0.5641	0.4568	0.2952	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	232
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-18
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	5e-16
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-15
smart00409	85	smart00409, IG, Immunoglobulin	3e-15
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	5e-15
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	9e-14
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	6e-13
cd00096	74	cd00096, Ig, Immunoglobulin domain	2e-12
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	2e-12
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-11
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	8e-11
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	9e-11
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-09
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	3e-09
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	7e-09
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-08
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	2e-08
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	3e-08
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	3e-08
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	3e-08
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	4e-08
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	7e-08
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	9e-08
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	1e-07
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	1e-07
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	4e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	6e-07
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	2e-06
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	2e-06
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	2e-06
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	3e-06
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	4e-06
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	6e-06
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	1e-05
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	1e-05
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	2e-05
cd04973	79	cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like	3e-05
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	3e-05
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	3e-05
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	7e-05
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	9e-05
cd05893	75	cd05893, Ig_Palladin_C, C-terminal immunoglobulin	2e-04
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	2e-04
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	3e-04
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	3e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	4e-04
cd05875	77	cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul	4e-04
cd05740	91	cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-	4e-04
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	4e-04
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	8e-04
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	9e-04
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	0.001
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	0.001
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	0.001
cd05871	91	cd05871, Ig_Semaphorin_classIII, Immunoglobulin (I	0.001
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.002
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	0.003
cd05875	77	cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul	0.003

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 76.7 bits (189), Expect = 1e-18
 Identities = 28/63 (44%), Positives = 41/63 (65%)

Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
           EGQSV L C AEG+P+P I+W ++   +  + + + +GSTL I  ++ ED G Y CVA+N
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAEN 60

Query: 148 GIG 150
             G
Sbjct: 61  SAG 63

Length = 63

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 70.2 bits (172), Expect = 5e-16
 Identities = 30/78 (38%), Positives = 48/78 (61%)

Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRI 133
           P I+   P+ + A +GQ+V LEC A G+P+P I WR+ + ++  + +   +G+ L+IP I
Sbjct: 1   PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNI 60

Query: 134 TKEDRGAYYCVAQNGIGR 151
             ED G Y C A+N  G+
Sbjct: 61  QFEDEGTYECEAENIKGK 78

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 68.3 bits (167), Expect = 3e-15
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----TGSTLQIPRITK 135
           P     KEG+SV L C A G P P ++W ++   +L            + STL I  +T 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKV 161
           ED G Y C A N  G  A     + V
Sbjct: 61  EDSGTYTCAATNSSG-SASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 68.3 bits (167), Expect = 3e-15
 Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----TGSTLQIPRITK 135
           P     KEG+SV L C A G P P ++W ++   +L            + STL I  +T 
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60

Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKV 161
           ED G Y C A N  G  A     + V
Sbjct: 61  EDSGTYTCAATNSSG-SASSGTTLTV 85

Length = 85

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 67.0 bits (164), Expect = 5e-15
 Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 4/73 (5%)

Query: 92  VQLECHAEGHPIPTISWRRENNAILPNGQTIFT--GSTLQIPRITKEDRGAYYCVAQNGI 149
           + LEC AEG P P ISW +     LP  +T F     TL+I  +++ED G Y C A N +
Sbjct: 1   LLLECIAEGLPTPEISWIKIGGE-LPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSL 59

Query: 150 GRGARRKIEVKVE 162
           G  AR  I V VE
Sbjct: 60  GS-ARHTISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 64.6 bits (158), Expect = 9e-14
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGA 140
             +EG+S +  C   G P PT+SW ++   +  + +   T      TL I  +  +D G 
Sbjct: 11  EVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGK 70

Query: 141 YYCVAQNGIGRGARRKIEVKV 161
           Y CVA N  G  A    E+ V
Sbjct: 71  YTCVATNSAGE-AEASAELTV 90

Length = 90

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 61.7 bits (150), Expect = 6e-13
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR 132
            PV+   +P  +V  EG+ V L C A G+P P  +W ++   +  +    F       P 
Sbjct: 1   KPVL---TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF------TPN 51

Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
           ++ ED G Y CVA NG G      + + V
Sbjct: 52  VSAEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 60.6 bits (146), Expect = 2e-12
 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 92  VQLECHAEGHPIPTISWRRENNAILPN--------GQTIFTGSTLQIPRITKEDRGAYYC 143
           V L C A G P PTI+W +    +  +          T    STL I  +T ED G Y C
Sbjct: 1   VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 144 VAQNGIG 150
           VA N  G
Sbjct: 61  VASNSAG 67

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 60.3 bits (146), Expect = 2e-12
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 92  VQLECHAEGHPIPTISWRRENNAILPN-GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
           + LEC AEG P P + W R +  + PN  + +    TLQ+  + + D G Y C A+N  G
Sbjct: 1   LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60

Query: 151 RGARRKIEVKVE 162
             AR    V VE
Sbjct: 61  -SARHHYTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 92  VQLECHAEGHPIPTISWRRENNAILPNGQT-IFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
           V+ +C   G P+PT+ WR+E+   LP G+  I    +L+I  +T  D G+Y C A+N +G
Sbjct: 1   VEFQCEVGGDPVPTVLWRKEDGE-LPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVG 59

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 56.5 bits (136), Expect = 8e-11
 Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 84  SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRG 139
           + A  GQSV L C A+G P PT++W + +   + +G+  ++    GS + I  + K D  
Sbjct: 13  ATANLGQSVTLACDADGFPEPTMTWTK-DGEPIESGEEKYSFNEDGSEMTILDVDKLDEA 71

Query: 140 AYYCVAQNGIGRGARRKIEVKV 161
            Y C+A+N  G     +I +KV
Sbjct: 72  EYTCIAENKAGE-QEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 56.6 bits (136), Expect = 9e-11
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query: 86  AKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVA 145
           A +GQ+V LEC A G+P+P I WR+    +    +   +G+ L+I  I  ED G Y C A
Sbjct: 13  ALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEA 72

Query: 146 QNGIGRGARR 155
           +N  G+   +
Sbjct: 73  ENIKGKDKHQ 82

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG-----STLQIPRITKEDRGAYYC 143
           G SV L C   G P   ++W +E   +  +             TL I  +T ED G Y C
Sbjct: 1   GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 144 VA 145
           V 
Sbjct: 61  VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 81  PQLSVAKEGQSVQLECHA-EGHPIPTISWRRENN--AILPNGQTIFTGSTLQIPRITKED 137
           P  +    G+   LEC    GHP PT+SWR++     +      I     L I    K D
Sbjct: 3   PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSD 62

Query: 138 RGAYYCVAQNGIG 150
            G Y CVA N +G
Sbjct: 63  EGTYKCVATNMVG 75

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 50.8 bits (121), Expect = 7e-09
 Identities = 31/76 (40%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILPNGQTIFTGSTLQIP 131
            PVI            G  V L C AEG P  PTISW R  +    +G    +GSTL + 
Sbjct: 1   KPVI--TVSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTLS 58

Query: 132 RITKEDRGAYYCVAQN 147
            +T ED G Y CVA N
Sbjct: 59  SVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 94  LECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGI 149
           L CHAEG P+P ++W +    I P      T    GS L I  +  ED GAY C+A+N  
Sbjct: 3   LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEA 62

Query: 150 G 150
           G
Sbjct: 63  G 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGSTLQIPRITKEDRGAYYCVAQ 146
           GQ   L C A G P P I W   +  ++ N     ++   TL I   T +D G++ C+A 
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS 60

Query: 147 NGIGRGARRKIEVKV 161
           N  G  A   +E+ +
Sbjct: 61  NAAGE-ATATVELHI 74

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 49.0 bits (117), Expect = 3e-08
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQN 147
           G  V +EC  +  P PTISW +    +  + +  I+   +L+I  +TK D G Y C A+N
Sbjct: 1   GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60

Query: 148 GIGRG 152
             G+ 
Sbjct: 61  FFGKA 65

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 49.1 bits (117), Expect = 3e-08
 Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 5/63 (7%)

Query: 92  VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS----TLQIPRITKEDRGAYYCVAQN 147
           V L CH +GHP PT  W R+    L +GQ  ++ S    TL +     +D G YYC A N
Sbjct: 1   VTLRCHIDGHPRPTYQWFRDGTP-LSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHN 59

Query: 148 GIG 150
             G
Sbjct: 60  AFG 62

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 49.1 bits (117), Expect = 3e-08
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPN--GQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
           G SV+L+C A G+P P I+W ++N  + P   G++     TL +  +  ED G Y C   
Sbjct: 9   GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68

Query: 147 NGIGR-GARRKIEV 159
           N  G   A  K++V
Sbjct: 69  NRAGEINATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 49.1 bits (117), Expect = 4e-08
 Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 9/74 (12%)

Query: 86  AKEGQSVQLECHAEGHPIPTISWRR-----ENNAILPNGQTIFTG----STLQIPRITKE 136
           A E + + L C AEG PIP I+WRR            +G+ +  G    S+L +  +   
Sbjct: 13  AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLT 72

Query: 137 DRGAYYCVAQNGIG 150
           D G Y C A N IG
Sbjct: 73  DAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 48.0 bits (114), Expect = 7e-08
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAI-LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
           EGQ+V   C A+G+P P I+W +  + + +     + +  TL+I R+   D+G Y C A 
Sbjct: 1   EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAV 60

Query: 147 NGIG 150
           N +G
Sbjct: 61  NIVG 64

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 48.5 bits (115), Expect = 9e-08
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG----ST 127
           T P  +   P+     EG+S +  C  +G P PT++W RE   I+ + +   T     ST
Sbjct: 1   TLPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKST 60

Query: 128 LQIPRITKEDRGAYYCVAQNGIGR 151
            +I ++   D G Y  V +N  G+
Sbjct: 61  FEISKVQMSDEGNYTVVVENSEGK 84

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 20/98 (20%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISW-------------RRENNAILPNG 119
           PP I+ +   L V+K G    L C AEG P PTI W              R +  +LP+G
Sbjct: 1   PPRIVEHPSDLIVSK-GDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSG 59

Query: 120 QTIFTGSTLQI--PRITKEDRGAYYCVAQNGIGRGARR 155
              F    L++   R  + D G Y CVA N +G    R
Sbjct: 60  SLFF----LRVVHGRKGRSDEGVYVCVAHNSLGEAVSR 93

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-GSTLQIPRITKEDRGAYYCVAQN 147
           G S++ EC A G+P P   W + N   L +   I      L+I +++  D G Y CVA+N
Sbjct: 14  GSSLRWECKASGNPRPAYRWLK-NGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAEN 72

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 46.1 bits (109), Expect = 4e-07
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 92  VQLECHAEGHPIPTISWRRENNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
           +  EC   G P PT+ W +  + ++P+    I     LQ+  + K D G Y C+A+N +G
Sbjct: 2   IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 45.8 bits (109), Expect = 6e-07
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPN-----GQTIFTGSTLQIPRITKEDRGAYYC 143
           G +V+L+C A G+P PTI+W ++             +      TL +  +   D G Y C
Sbjct: 9   GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTC 68

Query: 144 VAQNGIGR 151
           + +N  G 
Sbjct: 69  IVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 27 EGQSVQLECHAEGHPIPTISWRRNFKRLGR 56
          EGQSV L C AEG+P+P I+W ++ K L  
Sbjct: 1  EGQSVTLTCPAEGNPVPNITWLKDGKPLPE 30

Length = 63

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 92  VQLECHAEGHPIPTISWRRENNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
           VQ+ C A+G P PTI+W ++   +  +G+  I     L I  +   D+G Y CVA+N IG
Sbjct: 1   VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIG 60

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 17/89 (19%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRR----------ENNAILPNGQTIFTGSTLQI 130
           P   VA  G  V L C AEG P P I W++          E    LPNG  + T  ++  
Sbjct: 6   PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLIT--SVVH 63

Query: 131 PRITKEDRGAYYCVAQNG-----IGRGAR 154
            +  K D G Y CVAQN      + R AR
Sbjct: 64  SKHNKPDEGFYQCVAQNDSLGSIVSRTAR 92

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 92  VQLECHAEGHPIPTISWRRENNAILPNGQ---------TIFTGSTLQIPRITKEDRGAYY 142
           V L C AEG+P PTI W+       P             + +  +L I  + +ED G Y 
Sbjct: 1   VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 143 CVAQNGIG 150
           C   N +G
Sbjct: 61  CKVSNDVG 68

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 44.2 bits (104), Expect = 3e-06
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 11/74 (14%)

Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAIL-------PNGQTIFTG----STLQIPRITKE 136
           E  +  L C AEG PIP I+W+R ++          P+G+    G    S+L I  +   
Sbjct: 15  ENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLS 74

Query: 137 DRGAYYCVAQNGIG 150
           D G Y C A + IG
Sbjct: 75  DSGRYDCEAASRIG 88

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 43.4 bits (102), Expect = 4e-06
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 93  QLECHAEGHPIPTISWRRENNAILPNGQ-----TIFTGSTLQIPRITKEDRGAYYCVAQN 147
           +LEC A GHP P I+W+++     P  +      +       I  +  ED G Y C AQN
Sbjct: 2   RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQN 61

Query: 148 GIG 150
             G
Sbjct: 62  TAG 64

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS----TLQIPRITKEDRGAYYCV 144
           G++V+  C A G P P I+WR     +  + +   T      TL I  + + D+GAY C 
Sbjct: 1   GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCE 60

Query: 145 AQNGIGR 151
           A N  G 
Sbjct: 61  AINTRGM 67

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQN 147
           G  V +EC  +  P P  SW +    ++ N + +I+   +L+I  ITK D G+Y C A+N
Sbjct: 1   GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60

Query: 148 GIGR 151
             G+
Sbjct: 61  NRGK 64

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 9/71 (12%)

Query: 90  QSVQLECHAEGHPIPTISWRRENNAILPNGQTI---------FTGSTLQIPRITKEDRGA 140
           + + L C A G PIP+I+WR     I    +T+            S+L +  I   D G 
Sbjct: 18  EQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGE 77

Query: 141 YYCVAQNGIGR 151
           Y C A N IG+
Sbjct: 78  YLCTASNTIGQ 88

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 79  NSPQLSVAKEGQSVQLECHAEGH-PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKED 137
             P+    + G  V   C A+   P  T+ W R     LP+    F G  L I  +   D
Sbjct: 6   EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG-LPSRAMDFNG-ILTIRNVQLSD 63

Query: 138 RGAYYCVAQN 147
            G Y C   N
Sbjct: 64  AGTYVCTGSN 73

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGA 140
            +   A  G  +QL C      + +I+W ++   +  N +T  TG  +QI      D G 
Sbjct: 1   VESYSAHPGDLLQLRCRLR-DDVQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGL 59

Query: 141 YYCVA 145
           Y CV 
Sbjct: 60  YACVT 64

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. Length = 79

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAI--LPNGQTIFTGSTLQIPRITK-EDRGAYYCV 144
           EG+ V L C A G P PT  W      I   P+ +    G  L I   +K +D G Y C+
Sbjct: 19  EGK-VSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCL 77

Query: 145 AQNGIG 150
           A N +G
Sbjct: 78  ASNIVG 83

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS----TLQIPRITKE 136
           P  +V  EG +  + C AEG P+P + W      ++         +     LQ+  IT E
Sbjct: 7   PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSE 66

Query: 137 DRGAYYCVAQNGIGRGARRKIEVKV 161
            +    C A+N +G+ A   ++V V
Sbjct: 67  TQTTVTCTAENPVGQ-ANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAI-LPNGQTIFTGSTLQIPRITK-EDRGAYYCVA 145
           EG+ V + C A  +P P   WR+ N  I L N +    G  L I    K +D G Y C+ 
Sbjct: 19  EGK-VSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIV 77

Query: 146 QNGIGR 151
            N  G+
Sbjct: 78  SNIYGK 83

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 39.8 bits (93), Expect = 9e-05
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRR 49
          P +I+         K GQ+V LEC A G+P+P I WR+
Sbjct: 1  PSIIVVFPKDTYALK-GQNVTLECFALGNPVPQIKWRK 37

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143301 cd05893, Ig_Palladin_C, C-terminal immunoglobulin (Ig)-like domain of palladin

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 92  VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS------TLQIPRITKEDRGAYYCVA 145
           V+LEC   G P P I W++EN ++  N   +           L I   TKED G Y   A
Sbjct: 1   VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSA 60

Query: 146 QNGIG 150
           +N  G
Sbjct: 61  KNEAG 65

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. Length = 75

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---TIFTGS--TLQIPRITK 135
           P +    EG+++ L C   G P P +SW + + A+  +      +  G   +L I  ++ 
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS 67

Query: 136 EDRGAYYCVAQNGIG 150
           ED G Y  V +N  G
Sbjct: 68  EDSGKYGIVVKNKYG 82

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAIL---PNGQTIFTGSTLQIPRITKEDRGAYYCVA 145
           G++ +L+C AEG P PTI+WR     I    P+ +    G TL +  +   D   Y C A
Sbjct: 1   GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 146 QNGIG 150
            N  G
Sbjct: 61  SNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 92  VQLECHAEGHPIPTISWRRENNAILPNGQTIF-----TGS-TLQIPRITKEDRGAYYCVA 145
           V+LEC     P P I W++ N  +  N   I       G   L I    KED G Y   A
Sbjct: 1   VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSA 60

Query: 146 QNGIG 150
            N  G
Sbjct: 61  VNEAG 65

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 12 PPVI-LNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN 50
          PP I    S   + A  GQSV L C A+G P PT++W ++
Sbjct: 1  PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKD 40

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 94  LECHAEGHPIPTISWRRE----NNAILPNGQTIFTGSTLQI-----PRITKEDRGAYYCV 144
           +EC A+G+P+PT  W R     N A  P         TL I      R  ++  G Y C 
Sbjct: 3   IECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGR-PEDYEGEYQCF 61

Query: 145 AQNGIGRGARRKIEVK 160
           A+N +G     KI ++
Sbjct: 62  ARNNLGTALSNKILLQ 77

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77

>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG--STLQI 130
           P +  NNS      ++ Q V L C AEG    T  W   N ++L   +   +    TL  
Sbjct: 2   PVINSNNSVGNQPPEDNQPVTLTCEAEGQA--TYIWWVNNGSLLVPPRLQLSNDNRTLTF 59

Query: 131 PRITKEDRGAYYCVAQNGI 149
             +T+ D G Y C A N +
Sbjct: 60  NNVTRSDTGHYQCEASNEV 78

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D4 Ig-like domain. Length = 91

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITK 135
           P +    EG+++ L C   G+P P + W + +  I  +            ++L I  +T 
Sbjct: 8   PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS 67

Query: 136 EDRGAYYCVAQNGIG 150
           ED G Y    +N  G
Sbjct: 68  EDSGKYSINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 96  CHAEGHPIPTISWRRENNAILP-----NGQTIFTGSTLQIPRITKE-DRGAYYCVAQNGI 149
           C A G+P P I+W ++    LP     NG+     S       ++E D+G Y CVA N  
Sbjct: 5   CAASGNPDPEITWFKD---FLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSA 61

Query: 150 G 150
           G
Sbjct: 62  G 62

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 28 GQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQ 69
          G +V+L+C A G+P PTI+W ++ K   + H    Y   + +
Sbjct: 9  GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKK 50

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 25 AKEGQSVQLECHAEGHPIPTISWRR 49
          A E + + L C AEG PIP I+WRR
Sbjct: 13 AVELEQITLTCEAEGDPIPEITWRR 37

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 12/23 (52%), Positives = 15/23 (65%)

Query: 27 EGQSVQLECHAEGHPIPTISWRR 49
          E  +  L C AEG PIP I+W+R
Sbjct: 15 ENGAATLSCKAEGEPIPEITWKR 37

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 36.8 bits (85), Expect = 0.001
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 89  GQSVQLECHAEGHPIPTISWR-----RENNAILPN---GQTIFTG-STLQIPRITKEDRG 139
           G++    C   G P P I+W      +EN  + PN   G  + T    L I     +D G
Sbjct: 1   GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAG 60

Query: 140 AYYCVAQNGIG 150
            Y C A+N  G
Sbjct: 61  LYTCTARNSGG 71

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|143279 cd05871, Ig_Semaphorin_classIII, Immunoglobulin (Ig)-like domain of class III semaphorin

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 88  EGQSVQLECHAEGHPIPTISW--RRENN----AILPNGQTIFTGSTLQIPRITKEDRGAY 141
           E  S  LEC  +  P  ++ W  +R  +     +    + I T   L +  + + D G Y
Sbjct: 10  ENNSTFLECLPKS-PQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVY 68

Query: 142 YCVAQNGIGRGARRKIEVKV 161
            C A          K  + V
Sbjct: 69  TCTAVEHSFSQTLAKYTLHV 88

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascular endothelial growth factor receptor (VEGF)-induced angiogenesis and induces microvascular permeability. This group also includes Sema3B, -C, -D, -E, -G. Length = 91

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNG-----QTIFTGSTLQIPRITKEDRGAYYC 143
             +V+  C A G+P PT+ W +              +      +L +  +   D+G Y C
Sbjct: 9   ANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 68

Query: 144 VAQNGIG 150
           V +N  G
Sbjct: 69  VVENEYG 75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 14/25 (56%), Positives = 19/25 (76%)

Query: 25 AKEGQSVQLECHAEGHPIPTISWRR 49
          A +GQ+V LEC A G+P+P I WR+
Sbjct: 13 ALKGQNVTLECFALGNPVPVIRWRK 37

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

 Score = 35.3 bits (81), Expect = 0.003
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 33 LECHAEGHPIPTISWRRNFK 52
          +EC A+G+P+PT  W RN K
Sbjct: 3  IECEAKGNPVPTFQWTRNGK 22

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		99.97
KOG4194|consensus	873		99.97
PHA02785	326	IL-beta-binding protein; Provisional	99.93
KOG4221|consensus	1381		99.93
KOG4221|consensus	1381		99.92
KOG4222|consensus	1281		99.9
PHA02826	227	IL-1 receptor-like protein; Provisional	99.88
KOG4222|consensus	1281		99.85
KOG4194|consensus	873		99.76
PHA02785	326	IL-beta-binding protein; Provisional	99.71
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.66
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.66
PHA02826	227	IL-1 receptor-like protein; Provisional	99.61
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.6
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.57
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.56
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.56
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.56
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.56
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.54
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.54
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.54
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.53
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.52
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.52
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.51
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.5
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.5
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.5
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.5
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.49
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.48
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.48
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.48
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.48
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.48
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.47
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.47
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.47
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.47
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.47
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.47
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.46
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.46
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.46
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.46
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.46
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.46
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.46
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.46
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.45
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.45
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.44
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.44
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.44
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.43
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.43
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.43
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.43
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.43
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.43
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.43
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.42
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.42
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.42
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.41
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.41
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.41
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.4
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.4
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.4
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.4
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.4
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.39
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.39
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.39
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.38
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.38
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.37
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.36
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.36
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.36
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.36
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.36
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.36
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.35
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.35
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.35
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.35
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.34
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.34
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.34
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.34
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.33
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.33
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.33
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.33
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.33
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.33
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.32
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.32
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.32
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.31
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.31
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.31
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.31
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.31
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.3
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.3
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.3
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.29
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.29
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.29
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.28
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.28
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.28
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.28
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.28
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.27
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.27
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.27
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.27
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.27
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.27
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.27
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.27
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.26
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.26
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.25
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.25
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.24
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.24
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.24
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.24
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.24
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.23
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.23
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.23
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.22
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.22
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.22
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.22
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.22
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.21
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.21
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.19
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.19
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.18
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.18
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.17
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.17
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.16
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.16
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.16
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.16
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.15
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.14
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.14
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.14
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.14
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.13
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.12
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.11
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.11
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.11
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.11
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.11
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.1
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.09
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.07
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.07
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.07
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.07
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.06
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.06
KOG3515|consensus	741		99.05
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.05
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.04
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.04
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.03
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.03
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.02
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.02
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.02
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.01
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.01
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.01
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.0
KOG3515|consensus	741		99.0
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.0
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.0
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.0
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.99
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.97
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.97
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.96
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.96
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.96
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.96
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.96
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.95
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.92
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.9
smart00409	86	IG Immunoglobulin.	98.88
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.88
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.88
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.87
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.87
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.87
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.84
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.83
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.81
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.8
PHA03376	221	BARF1; Provisional	98.79
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.78
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.75
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.73
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.73
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.71
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.69
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.66
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.65
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.64
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.64
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.62
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.62
smart00409	86	IG Immunoglobulin.	98.62
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.62
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.61
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.61
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.61
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.56
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.56
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.56
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.55
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.55
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.52
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.48
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.44
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.44
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.41
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.41
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.39
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.38
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.36
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.36
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.34
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.34
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.34
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.33
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.33
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.33
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.32
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.3
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.3
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.3
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.28
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.28
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.27
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.26
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.24
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.2
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.19
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.18
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.17
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.16
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.15
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.15
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.15
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.14
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.14
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.14
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.13
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.13
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.12
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.12
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.12
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.1
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.1
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.09
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	98.09
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.09
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.08
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.08
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.06
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.04
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.04
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.04
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.02
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.02
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.02
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.01
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.0
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.98
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.97
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.97
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.97
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.96
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.96
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	97.96
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.94
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.94
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.94
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.92
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.9
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.87
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.86
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.83
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.83
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.82
smart00407	75	IGc1 Immunoglobulin C-Type.	97.82
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.82
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.81
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.8
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.79
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.77
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.75
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.75
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.73
smart00407	75	IGc1 Immunoglobulin C-Type.	97.73
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.72
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.69
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.67
PHA03376	221	BARF1; Provisional	97.66
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.65
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.65
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.64
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.62
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.6
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.6
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.57
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.56
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.5
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.49
smart00406	81	IGv Immunoglobulin V-Type.	97.49
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.47
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.45
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.41
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.41
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.38
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.37
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.37
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.35
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.32
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.28
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.27
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.25
KOG1480|consensus	909		97.23
PHA02982	251	hypothetical protein; Provisional	97.15
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.13
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.12
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.11
smart00406	81	IGv Immunoglobulin V-Type.	97.05
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.03
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.02
PHA03269	566	envelope glycoprotein C; Provisional	97.0
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.96
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.93
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.93
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.92
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.91
PHA03270	466	envelope glycoprotein C; Provisional	96.83
PHA03270	466	envelope glycoprotein C; Provisional	96.74
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	96.73
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.66
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.63
PHA03273	486	envelope glycoprotein C; Provisional	96.6
PHA03269	566	envelope glycoprotein C; Provisional	96.53
PHA02633	63	hypothetical protein; Provisional	96.4
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.34
PHA03273	486	envelope glycoprotein C; Provisional	96.22
PHA03271	490	envelope glycoprotein C; Provisional	96.11
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.09
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.09
KOG1480|consensus	909		96.06
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.93
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	95.91
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.84
PHA03042	286	CD47-like protein; Provisional	95.71
PHA03042	286	CD47-like protein; Provisional	95.63
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.62
PHA02914	500	Immunoglobulin-like domain protein; Provisional	95.56
PHA03271	490	envelope glycoprotein C; Provisional	94.83
PHA02865	338	MHC-like TNF binding protein; Provisional	94.6
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.51
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	94.3
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	93.98
PHA02633	63	hypothetical protein; Provisional	93.97
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	93.24
PHA03052	69	Hypothetical protein; Provisional	91.23
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	89.04
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	88.67
PHA03052	69	Hypothetical protein; Provisional	88.14
PHA02865	338	MHC-like TNF binding protein; Provisional	87.69
KOG4597|consensus	560		87.14
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	86.52
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	84.98
KOG4597|consensus	560		84.04

>KOG3513|consensus

Probab=100.00  E-value=4e-31  Score=212.70  Aligned_cols=220  Identities=29%  Similarity=0.514  Sum_probs=185.1

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE------------------------eeeeEEEEeeee-
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK------------------------RLGRLHLAIPYT-   64 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~------------------------~~~~~~~~~~~~-   64 (232)
                      ..+|+|....+.......|+.|.|.|-+.|+|-|+|.|.|.+.                        +.|.|.|..... 
T Consensus       238 ~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~  317 (1051)
T KOG3513|consen  238 EYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSR  317 (1051)
T ss_pred             ccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccc
Confidence            4588888875668889999999999999999999999999432                        225677766333 


Q ss_pred             -----cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc---EEeeCCeEEECCCCCC
Q psy15206         65 -----SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---TIFTGSTLQIPRITKE  136 (232)
Q Consensus        65 -----~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~  136 (232)
                           ...+.+..+|..+. .+....+..|+.+.+.|.+.|.|.|.+.|++||.++....+   .....+.|.|.+++..
T Consensus       318 G~~~~~~~v~v~a~P~w~~-~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~  396 (1051)
T KOG3513|consen  318 GSATHSGHVTVYAPPYWLQ-KPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQES  396 (1051)
T ss_pred             ccceeeEEEEEecCchhhc-ccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccc
Confidence                 67788888888876 67778888999999999999999999999999999876655   7778899999999999


Q ss_pred             CCeEEEEEeEeCCCCceeeEEEEEEEec-cEEEecccee--eeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEE-
Q psy15206        137 DRGAYYCVAQNGIGRGARRKIEVKVEFA-PIVTVQSTRI--GQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHS-  212 (232)
Q Consensus       137 ~~g~y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~-  212 (232)
                      |+|.|.|.++|..|. ....+.|.|... |.+...+...  .+..|..+.+.|...+.|.+.+.|.|++..+.+++++. 
T Consensus       397 dsg~YQC~A~Nk~G~-i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i  475 (1051)
T KOG3513|consen  397 DSGVYQCIAENKYGT-IYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRI  475 (1051)
T ss_pred             cCeEEEeeeecccce-EeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEE
Confidence            999999999999988 667888988864 7777666544  56679999999999999999999999988666666654 


Q ss_pred             -----EEEeccccCCceEEEEecC
Q psy15206        213 -----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       213 -----~~~~~~~~~d~g~Y~C~~~  231 (232)
                           |.+.+++.+|+|.|+|.|.
T Consensus       476 ~edGtL~I~n~t~~DaG~YtC~A~  499 (1051)
T KOG3513|consen  476 LEDGTLEISNVTRSDAGKYTCVAE  499 (1051)
T ss_pred             CCCCcEEecccCcccCcEEEEEEE
Confidence                 4666788899999999874

>KOG3513|consensus

Probab=99.97  E-value=1.2e-29  Score=204.42  Aligned_cols=223  Identities=27%  Similarity=0.485  Sum_probs=181.3

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------------eeEEEE
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------------GRLHLA   60 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------------~~~~~~   60 (232)
                      +.+.++|.++.. +.+..+..|++++|.|.+.|.|.+.|+|++++.++                          |.|+|.
T Consensus       326 v~v~a~P~w~~~-~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~  404 (1051)
T KOG3513|consen  326 VTVYAPPYWLQK-PQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCI  404 (1051)
T ss_pred             EEEecCchhhcc-cceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEee
Confidence            467889999988 99999999999999999999999999999976443                          345554


Q ss_pred             e------eeecCceeecCC-cEEecCC-CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-eCCeEEEC
Q psy15206         61 I------PYTSPEAQVDTP-PVILNNS-PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-TGSTLQIP  131 (232)
Q Consensus        61 ~------~~~~~~l~v~~~-p~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~  131 (232)
                      .      .|..+.|.|... |.+.... .....+..|..+.+.|...+.|.+.++|.+.++.+...+++.. .+++|.|.
T Consensus       405 A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~  484 (1051)
T KOG3513|consen  405 AENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEIS  484 (1051)
T ss_pred             eecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEec
Confidence            4      333778888765 4443322 2223566799999999999999999999999886555666555 68899999


Q ss_pred             CCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC--
Q psy15206        132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN--  207 (232)
Q Consensus       132 ~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~--  207 (232)
                      +++.+|.|.|+|.++|..|. ......|.|..++.+...|....+..|+.++|.|.+...+..  .|.|.+||..+..  
T Consensus       485 n~t~~DaG~YtC~A~N~~G~-a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~  563 (1051)
T KOG3513|consen  485 NVTRSDAGKYTCVAENKLGK-AESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNP  563 (1051)
T ss_pred             ccCcccCcEEEEEEEcccCc-cceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccC
Confidence            99999999999999999998 678889999999999999999999999999999999766544  5999999986541  


Q ss_pred             ----------CCeEEEEEeccccCCceEEEEecC
Q psy15206        208 ----------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       208 ----------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                                .+.-.+.+.++.+.|+|.|.|.|.
T Consensus       564 ~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aq  597 (1051)
T KOG3513|consen  564 DGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQ  597 (1051)
T ss_pred             CCCceEEeCCcCccceEEEeeccccCceEEEEEE
Confidence                      111347778889999999999873

>KOG4194|consensus

Probab=99.97  E-value=9.4e-30  Score=192.87  Aligned_cols=217  Identities=24%  Similarity=0.457  Sum_probs=179.9

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecC--CCCCeEEEEeCc--------------------------------------
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEG--HPIPTISWRRNF--------------------------------------   51 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~--~p~~~~~W~~~~--------------------------------------   51 (232)
                      +|.|... |..+.+..|+.++|+|.+.+  ..+.++.|.++.                                      
T Consensus       503 kpqI~~q-Pe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV  581 (873)
T KOG4194|consen  503 KPQIVTQ-PETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV  581 (873)
T ss_pred             CcceecC-chHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence            7888888 89999999999999999987  457799999921                                      


Q ss_pred             --EeeeeEEEEe------eee-cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC---
Q psy15206         52 --KRLGRLHLAI------PYT-SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG---  119 (232)
Q Consensus        52 --~~~~~~~~~~------~~~-~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~---  119 (232)
                        ...|+|+|.+      +|. .++|+|...|.+.. .|...++..|+.+.|.|.+.|.|.|.|.|.++|+.-++..   
T Consensus       582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtk-tP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eR  660 (873)
T KOG4194|consen  582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTK-TPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARER  660 (873)
T ss_pred             ecccCceEEEEEecccCcchhheeEEEeeccCcccc-CcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhh
Confidence              1225888876      332 88899998888875 6888899999999999999999999999999987733322   


Q ss_pred             cE--EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC-CeE
Q psy15206        120 QT--IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH-PIL  196 (232)
Q Consensus       120 ~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~  196 (232)
                      +.  ...+..+.|.++..+|.|.|+|.+.|..|. .+...++.|...|.+...-.+..+..|+.+.|.|.+.+.|. |..
T Consensus       661 Rl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~  739 (873)
T KOG4194|consen  661 RLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRL  739 (873)
T ss_pred             eeeecCCCCEEEEecccccccceeEEeeeccccc-eeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccc
Confidence            22  123568999999999999999999999888 77889999999998888777888999999999999999887 899


Q ss_pred             EEeeCCEEec-------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        197 YWAKDGEIVV-------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       197 ~W~~~g~~~~-------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|+|+++.+.       ..+...+...+...+|+|.|+|.++
T Consensus       740 ~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~  781 (873)
T KOG4194|consen  740 EWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMS  781 (873)
T ss_pred             cccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEE
Confidence            9999987654       3345566666777899999999975

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.93  E-value=6.2e-24  Score=158.27  Aligned_cols=207  Identities=17%  Similarity=0.269  Sum_probs=141.4

Q ss_pred             cceEeecCCeEEEEEEe-----cCCCCCeEEEEeCcEe----------------------eeeEEEEeeee------cCc
Q psy15206         21 QLSVAKEGQSVQLECHA-----EGHPIPTISWRRNFKR----------------------LGRLHLAIPYT------SPE   67 (232)
Q Consensus        21 ~~~~~~~G~~v~l~C~~-----~~~p~~~~~W~~~~~~----------------------~~~~~~~~~~~------~~~   67 (232)
                      ....+.+|+.+.|.|.+     .+.|.+.+.|+|++..                      .|.|+|.....      .+.
T Consensus        34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~  113 (326)
T PHA02785         34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN  113 (326)
T ss_pred             chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence            34567789999999997     5788899999996432                      14566665322      344


Q ss_pred             eeecCC--cEEecCCCCceEeecCCcEEEEeee-----ccCCCCeEEEEeCCeeeCCCCcEE-eeCCeEEECCCCCCCCe
Q psy15206         68 AQVDTP--PVILNNSPQLSVAKEGQSVQLECHA-----EGHPIPTISWRRENNAILPNGQTI-FTGSTLQIPRITKEDRG  139 (232)
Q Consensus        68 l~v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g  139 (232)
                      |+|...  +.+. .......+.+|+.+.+.|..     .+.+.+.++|+++. .+ ...+.. ..++.|.|.++..+|.|
T Consensus       114 L~V~~~~~~~~~-~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~-~~~r~~~~~~~~L~i~~v~~~d~G  190 (326)
T PHA02785        114 LTIVSVSESNID-LISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RL-RNKRLKQRTPGIITIEDVRKNDAG  190 (326)
T ss_pred             EEEEecCCCccc-eeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-cc-CCcceEecCCCeEEEeecChhhCe
Confidence            455322  1111 11222345678899999972     35678899998754 22 222322 23568999999999999


Q ss_pred             EEEEEeEeCCCCce---eeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCCC---eEEEeeCCEEecCCC-
Q psy15206        140 AYYCVAQNGIGRGA---RRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAKDGEIVVNDE-  209 (232)
Q Consensus       140 ~y~C~~~~~~~~~~---~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~g~~~~~~~-  209 (232)
                      .|+|.+.+..+...   ...+.+.|..   +|. ...|....+..|+.+.|.|.+.|.|.+   .+.|++||..+.... 
T Consensus       191 ~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~-~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~  269 (326)
T PHA02785        191 YYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPT-MQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDE  269 (326)
T ss_pred             EEEEEEEeccCCEEEeEEEEEEEEEeccCCCce-ecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCC
Confidence            99999999766522   2233444542   333 344566677789999999999998874   799999998764210 


Q ss_pred             ---------------------eEEEEEeccccCCceEEEEecC
Q psy15206        210 ---------------------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 ---------------------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                                           ...|.+.++..+|.|+|+|.|.
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~  312 (326)
T PHA02785        270 DGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAF  312 (326)
T ss_pred             CCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEE
Confidence                                 1357777888999999999874

>KOG4221|consensus

Probab=99.93  E-value=2.7e-24  Score=173.95  Aligned_cols=221  Identities=26%  Similarity=0.475  Sum_probs=172.4

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee------------------------eeEEEEeee-
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------------------GRLHLAIPY-   63 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~------------------------~~~~~~~~~-   63 (232)
                      +...|.+... +.+..+..|+++.|.|.+.+.+.+.+.|.++...+                        |.|+|.++- 
T Consensus       137 ~a~~~~f~~~-~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g  215 (1381)
T KOG4221|consen  137 LAGLADFALQ-PESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGG  215 (1381)
T ss_pred             ecccCccccC-ccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecC
Confidence            3446667766 88999999999999999999888899999954422                        356665522 


Q ss_pred             ------ecCceeecCCcE-----EecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc-EE-eeCCeEEE
Q psy15206         64 ------TSPEAQVDTPPV-----ILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-TI-FTGSTLQI  130 (232)
Q Consensus        64 ------~~~~l~v~~~p~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~-~~~~~l~i  130 (232)
                            ....|++...+.     .+...+...++..|+.+.|.|.+.+.+.|.+.|.+++..+..+.. .. ...+.|.|
T Consensus       216 ~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slli  295 (1381)
T KOG4221|consen  216 ASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLI  295 (1381)
T ss_pred             CcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEE
Confidence                  155566652221     123357778888999999999999999999999999988865542 22 23568999


Q ss_pred             CCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe
Q psy15206        131 PRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY  210 (232)
Q Consensus       131 ~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~  210 (232)
                      .+++..|+|.|+|.+.|.... .....++.|..+|.+...|..+...++.++.+.|.+.|.|.+.+.|+|||..+..++.
T Consensus       296 S~a~~~dSg~YtC~Atn~~D~-idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy  374 (1381)
T KOG4221|consen  296 SNATDDDSGKYTCRATNTNDS-IDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDY  374 (1381)
T ss_pred             eccccccCceEEEEecCCCcc-cccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccc
Confidence            999999999999999985443 4456788999999999999999999999999999999999999999999987765554


Q ss_pred             EEEE------EeccccCCceEEEEecC
Q psy15206        211 HSIS------NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       211 ~~~~------~~~~~~~d~g~Y~C~~~  231 (232)
                      +++.      +...-..|.|.|+|.+.
T Consensus       375 ~ki~~~~~lrIlgi~~sdeg~yQcvae  401 (1381)
T KOG4221|consen  375 FKIVGGGNLRILGIVKSDEGFYQCVAE  401 (1381)
T ss_pred             eEecCCCCcEEEEEecccchhhhhhhc
Confidence            4433      33445589999999864

>KOG4221|consensus

Probab=99.92  E-value=1.4e-22  Score=164.16  Aligned_cols=216  Identities=22%  Similarity=0.434  Sum_probs=160.5

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCC--CCCeEEEEeCcEee-------------------------------eeEE
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGH--PIPTISWRRNFKRL-------------------------------GRLH   58 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~--p~~~~~W~~~~~~~-------------------------------~~~~   58 (232)
                      +=.|.++ |.+  +.+|..+.|.|.....  +.+.|.|.+++..+                               |.|+
T Consensus        41 ~~~f~~e-p~d--~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yq  117 (1381)
T KOG4221|consen   41 PLQFLLE-PSD--AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQ  117 (1381)
T ss_pred             cceEEec-ccc--cccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEE
Confidence            3345555 443  3899999999998742  47899999955433                               3566


Q ss_pred             EEeeee--------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEE-eeCCeEE
Q psy15206         59 LAIPYT--------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI-FTGSTLQ  129 (232)
Q Consensus        59 ~~~~~~--------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~l~  129 (232)
                      |.....        ...+.+...+.+. ..+...++..|+++.|.|.+.+.+-+.+.|.++..++....+++ ..++.|.
T Consensus       118 c~atv~~~gsi~Sr~a~v~~a~~~~f~-~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~  196 (1381)
T KOG4221|consen  118 CLATVEDVGSILSRTAKVALAGLADFA-LQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALE  196 (1381)
T ss_pred             EEEEccccceeecceEEEEecccCccc-cCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEE
Confidence            655222        3333333333333 24566788899999999999998888999999998776555543 3578999


Q ss_pred             ECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEecc------EEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCE
Q psy15206        130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP------IVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE  203 (232)
Q Consensus       130 i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~  203 (232)
                      |..++..|.|.|.|.+++...+..+....+.|...|      .+...|....+..|+++.|.|.+.|.|.|.|.|.|||.
T Consensus       197 I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~  276 (1381)
T KOG4221|consen  197 ISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGE  276 (1381)
T ss_pred             ecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCe
Confidence            999999999999999998765545566677766333      24566778888899999999999999999999999998


Q ss_pred             EecCCC-eE------EEEEeccccCCceEEEEecC
Q psy15206        204 IVVNDE-YH------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       204 ~~~~~~-~~------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+..++ ++      .|.+.+++..|+|.|+|+|+
T Consensus       277 ~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~At  311 (1381)
T KOG4221|consen  277 KISVDSYRIVLVGGSSLLISNATDDDSGKYTCRAT  311 (1381)
T ss_pred             eeeecceEEEEecccceEEeccccccCceEEEEec
Confidence            877553 22      33455778899999999986

>KOG4222|consensus

Probab=99.90  E-value=2e-23  Score=168.03  Aligned_cols=221  Identities=24%  Similarity=0.463  Sum_probs=173.5

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------------------eeE
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------------------GRL   57 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------------------~~~   57 (232)
                      ..+|.|+.- |.+..+..|+.++|.|.+++.|++.|+|+|++...                                |.|
T Consensus        29 d~~p~iieh-p~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y  107 (1281)
T KOG4222|consen   29 DQPPRIIEH-PHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVY  107 (1281)
T ss_pred             cCCCceEec-chhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCcee
Confidence            458999999 99999999999999999999999999999965211                                233


Q ss_pred             EEEeeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCC---CCcEEeeCC
Q psy15206         58 HLAIPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILP---NGQTIFTGS  126 (232)
Q Consensus        58 ~~~~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~---~~~~~~~~~  126 (232)
                      .|.....       ...|.+-....-+...+.......|+.+.|.|.- .+.+.+.+.|.|+|+.+..   .......++
T Consensus       108 ~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG  187 (1281)
T KOG4222|consen  108 SCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGG  187 (1281)
T ss_pred             EeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCC
Confidence            4433110       3333333222223345566677789999999985 5688899999999998752   223345678


Q ss_pred             eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec
Q psy15206        127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV  206 (232)
Q Consensus       127 ~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~  206 (232)
                      .|.|.++...|.|.|.|++.|..|...+...++.|+.+|.+...+.++.+..|..+.+.|.+.|.|.|.+.|.|++..+.
T Consensus       188 ~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P  267 (1281)
T KOG4222|consen  188 NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLP  267 (1281)
T ss_pred             cEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCC
Confidence            99999999999999999999999888888899999999999999999999999999999999999999999999776655


Q ss_pred             CC------CeEEEEEeccccCCceEEEEecC
Q psy15206        207 ND------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 ~~------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..      +...+.+...+..|.|.|.|.+.
T Consensus       268 ~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~  298 (1281)
T KOG4222|consen  268 RSRYSILDDTQTLRIDRVTPTDEGTYVCPAE  298 (1281)
T ss_pred             ccceeeeeccccccccccCCCcccceeeecc
Confidence            32      22344455666689999999875

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.88  E-value=4.3e-21  Score=134.93  Aligned_cols=143  Identities=17%  Similarity=0.295  Sum_probs=105.9

Q ss_pred             CceEeecCCcEEEEeeeccCC-----------CCeEEEEeCCeeeCC---CC----------cEEeeCCeEEECCCCCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP-----------IPTISWRRENNAILP---NG----------QTIFTGSTLQIPRITKED  137 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~-----------~~~~~W~~~~~~~~~---~~----------~~~~~~~~l~i~~~~~~~  137 (232)
                      ....+.+|+++.|.|.+.+.+           .+.+.|++.+.....   ..          .....+..|.|.++..+|
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D  109 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID  109 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence            445677999999999987643           347999998754210   00          111235689999999999


Q ss_pred             CeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEee-----cCCCCeEEEeeCCEEecCCCeE-
Q psy15206        138 RGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIE-----AYPHPILYWAKDGEIVVNDEYH-  211 (232)
Q Consensus       138 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----~~p~~~~~W~~~g~~~~~~~~~-  211 (232)
                      +|.|.|.+.|..+. ....+.|.|..++      .+..+..|+++.|.|.+.     +.|.|.++|+|||..+..+.++ 
T Consensus       110 sG~Y~C~a~N~~~~-~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~  182 (227)
T PHA02826        110 EGIYICTISSGNIC-EESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQ  182 (227)
T ss_pred             CEEEEEEEEECCcc-eEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEE
Confidence            99999999997655 4556666664322      234567899999999975     3467899999999988644333 


Q ss_pred             ------EEEEeccccCCceEEEEecC
Q psy15206        212 ------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       212 ------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                            .|.+.++..+|+|.|+|.|+
T Consensus       183 ~~~~~~~L~I~~V~~~DsG~YtC~a~  208 (227)
T PHA02826        183 LRNNNSTLVIKSATHDDSGIYTCNLR  208 (227)
T ss_pred             EeCCCCEEEECcCCHHhCEEEEEEEE
Confidence                  57778889999999999985

>KOG4222|consensus

Probab=99.85  E-value=9.9e-21  Score=152.82  Aligned_cols=226  Identities=23%  Similarity=0.426  Sum_probs=173.4

Q ss_pred             CCCCcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe--eeeEEEEee-ee----------------
Q psy15206          4 SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR--LGRLHLAIP-YT----------------   64 (232)
Q Consensus         4 ~~~~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~--~~~~~~~~~-~~----------------   64 (232)
                      .++++|+++|.+... +.+..+..|..+.|.|.+.+.|.+.+.|.++...  ..+|.+... ++                
T Consensus       217 ~A~lsv~e~P~f~~r-p~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C  295 (1281)
T KOG4222|consen  217 PARLSVQEKPWFWKR-PKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVC  295 (1281)
T ss_pred             cceeeeccCCccccc-cccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceee
Confidence            367899999999999 9999999999999999999999999999995432  335555442 11                


Q ss_pred             -----------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC--------CCc-EEee
Q psy15206         65 -----------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP--------NGQ-TIFT  124 (232)
Q Consensus        65 -----------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~--------~~~-~~~~  124 (232)
                                 ...++|..+|.+.. .+....+..|..+.|.|...|.|.|.+.|.+.+..-..        ..+ ....
T Consensus       296 ~a~n~vG~l~asa~ltV~apP~f~k-kp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~  374 (1281)
T KOG4222|consen  296 PAENLVGGLEASATLTVQAPPSFGK-KPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSP  374 (1281)
T ss_pred             eccccccccccccceEEecCccccc-ccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecC
Confidence                       77888888887764 56667777889999999999999999999998754211        111 1223


Q ss_pred             CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE------eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEE
Q psy15206        125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE------FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYW  198 (232)
Q Consensus       125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W  198 (232)
                      .++|.|.+++..|.|.|.|...+..+....+.....+.      .+|.+...+.+.....+..+.|.|.+.+.|-+.+.|
T Consensus       375 ~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~w  454 (1281)
T KOG4222|consen  375 TGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISW  454 (1281)
T ss_pred             CCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCCCCCchh
Confidence            45899999999999999999777665533332222221      245566778888888899999999999999999999


Q ss_pred             eeCCEEecCC-------CeEEEEEeccccCCceEEEEecC
Q psy15206        199 AKDGEIVVND-------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       199 ~~~g~~~~~~-------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +++|-.+...       ....+.+.+....|.|.|+|.++
T Consensus       455 l~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as  494 (1281)
T KOG4222|consen  455 LKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIAS  494 (1281)
T ss_pred             hhcccccccCCcccceeeeceeeeeeeecCCCcceeeecc
Confidence            9998765432       23466667777799999999875

>KOG4194|consensus

Probab=99.76  E-value=9.6e-18  Score=128.42  Aligned_cols=152  Identities=22%  Similarity=0.364  Sum_probs=120.2

Q ss_pred             CCCceEeecCCcEEEEeeecc--CCCCeEEEEeCCeeeCCCC-----cE--Ee----------eCCeEEECCCCCCCCeE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEG--HPIPTISWRRENNAILPNG-----QT--IF----------TGSTLQIPRITKEDRGA  140 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~~~~~-----~~--~~----------~~~~l~i~~~~~~~~g~  140 (232)
                      .|.......|+.+.|.|.+.+  ..+.++.|.++........     ++  +.          ..+.|.+.+|...|.|.
T Consensus       509 qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~gr  588 (873)
T KOG4194|consen  509 QPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGR  588 (873)
T ss_pred             CchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCce
Confidence            566666667999999999876  3345799998765321110     00  00          12468889999999999


Q ss_pred             EEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEE-ec--CCC-------e
Q psy15206        141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI-VV--NDE-------Y  210 (232)
Q Consensus       141 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~-~~--~~~-------~  210 (232)
                      |.|.+.|..|+..+..+++.|...|.+...|.++....|+.+.|.|.+.|.|.|+|.|.|+|.. ..  .+.       .
T Consensus       589 YQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmped  668 (873)
T KOG4194|consen  589 YQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPED  668 (873)
T ss_pred             EEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCC
Confidence            9999999999988899999999999999999999999999999999999999999999999875 21  111       1


Q ss_pred             EEEEEeccccCCceEEEEecC
Q psy15206        211 HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       211 ~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      -.+-+.+++.+|+|.|+|.|.
T Consensus       669 d~f~Itnvk~eD~GiYtC~A~  689 (873)
T KOG4194|consen  669 DVFFITNVKIEDQGIYTCTAQ  689 (873)
T ss_pred             CEEEEecccccccceeEEeee
Confidence            245566788999999999874

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.71  E-value=2.7e-16  Score=117.53  Aligned_cols=143  Identities=17%  Similarity=0.253  Sum_probs=100.8

Q ss_pred             EeecCCcEEEEeee-----ccCCCCeEEEEeCCeeeCCCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         85 VAKEGQSVQLECHA-----EGHPIPTISWRRENNAILPNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        85 ~~~~g~~~~l~C~~-----~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      ...+|+.+.|.|..     .|.|.+.+.|++++....  ..... .+..|.|.++..+|+|.|+|.+.|..+. ....+.
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~~  113 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADND--RIIPIDNGSNMLILNPTQSDSGIYICITKNETYC-DMMSLN  113 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccc--eEEEccCCceEEEcccCcccCeEEEEEEECCCcc-eEEEEE
Confidence            45579999999996     578888999999875321  11112 2335889999999999999999998765 445566


Q ss_pred             EEEEe--ccEEEeccceeeeeccCeEEEEEE-----eecCCCCeEEEeeCCEEecCC-----CeEEEEEeccccCCceEE
Q psy15206        159 VKVEF--APIVTVQSTRIGQALHHDMDLDCH-----IEAYPHPILYWAKDGEIVVND-----EYHSISNFGTSEGTTGSL  226 (232)
Q Consensus       159 l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~~~~~W~~~g~~~~~~-----~~~~~~~~~~~~~d~g~Y  226 (232)
                      |.|..  ++.+...+.+..+.+|..+.+.|.     ..+.|++.+.|++++. +...     ..-.|.+.+++.+|+|.|
T Consensus       114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y  192 (326)
T PHA02785        114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYY  192 (326)
T ss_pred             EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCcceEecCCCeEEEeecChhhCeEE
Confidence            66643  232322233445668999999997     2467888999998653 2211     123577788999999999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      +|.|.
T Consensus       193 ~C~~~  197 (326)
T PHA02785        193 TCVLK  197 (326)
T ss_pred             EEEEE
Confidence            99985

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.66  E-value=3.1e-15  Score=90.22  Aligned_cols=81  Identities=35%  Similarity=0.601  Sum_probs=66.6

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+....++.|.|.++..+|.|.|.|.+.|..|. ....+.+
T Consensus         7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l   85 (88)
T cd05851           7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK-DKHQARV   85 (88)
T ss_pred             ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc-eEEEEEE
Confidence            456677889999999999999999999999998776544444445668999999999999999999999887 4555555


Q ss_pred             EE
Q psy15206        160 KV  161 (232)
Q Consensus       160 ~v  161 (232)
                      .|
T Consensus        86 ~V   87 (88)
T cd05851          86 YV   87 (88)
T ss_pred             EE
Confidence            54

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.66  E-value=6.1e-15  Score=90.66  Aligned_cols=85  Identities=24%  Similarity=0.354  Sum_probs=71.9

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARR  155 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  155 (232)
                      .+....+..|+.+.|.|.+.|.|.+.+.|++++..+....+....    .+.|.|.++..+|.|.|+|.+.|..|. ...
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~-~~~   84 (98)
T cd05762           6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGS-RQA   84 (98)
T ss_pred             CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCc-eeE
Confidence            456678889999999999999999999999999988655444332    467999999999999999999999998 666


Q ss_pred             EEEEEEEecc
Q psy15206        156 KIEVKVEFAP  165 (232)
Q Consensus       156 ~~~l~v~~~p  165 (232)
                      .+.|.|...|
T Consensus        85 ~~~l~V~~~P   94 (98)
T cd05762          85 QVNLTVVDKP   94 (98)
T ss_pred             EEEEEEecCC
Confidence            8888887765

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.61  E-value=1.4e-13  Score=97.18  Aligned_cols=123  Identities=20%  Similarity=0.291  Sum_probs=86.0

Q ss_pred             CcceEeecCCeEEEEEEecCC-----------CCCeEEEEeCcEee----------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGH-----------PIPTISWRRNFKRL----------------------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~-----------p~~~~~W~~~~~~~----------------------------------   54 (232)
                      ..++.+.+|++++|.|.+.+.           ..+.+.|+|.+...                                  
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~  108 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI  108 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence            456789999999999998663           35689999964321                                  


Q ss_pred             --eeEEEEeeee------cCceeecCCcEEecCCCCceEeecCCcEEEEeeecc-----CCCCeEEEEeCCeeeCCCCcE
Q psy15206         55 --GRLHLAIPYT------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-----HPIPTISWRRENNAILPNGQT  121 (232)
Q Consensus        55 --~~~~~~~~~~------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~~~W~~~~~~~~~~~~~  121 (232)
                        |.|.|.+...      .+.|.|..       ......+.+|+.+.|.|.+.+     .|.|.++|++++..+....+.
T Consensus       109 DsG~Y~C~a~N~~~~~~~~i~L~V~~-------~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~  181 (227)
T PHA02826        109 DEGIYICTISSGNICEESTIRLTFDS-------GTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRI  181 (227)
T ss_pred             HCEEEEEEEEECCcceEEEEEEEEec-------CCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCE
Confidence              2344443221      22333321       122345668999999999753     356889999999988655554


Q ss_pred             Ee--eCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206        122 IF--TGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       122 ~~--~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ..  .++.|.|.++..+|+|.|+|.+....
T Consensus       182 ~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        182 QLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            43  34579999999999999999998753

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.60  E-value=4.1e-14  Score=85.60  Aligned_cols=81  Identities=36%  Similarity=0.672  Sum_probs=66.3

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..........+.|.|.+++.+|.|.|.|.+.|..|. ......+
T Consensus         7 ~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l   85 (88)
T cd04968           7 FPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGK-DTHQGRI   85 (88)
T ss_pred             CCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCc-EEEEEEE
Confidence            456677889999999999999999999999988776554444456778999999999999999999999887 4455555


Q ss_pred             EE
Q psy15206        160 KV  161 (232)
Q Consensus       160 ~v  161 (232)
                      .|
T Consensus        86 ~V   87 (88)
T cd04968          86 YV   87 (88)
T ss_pred             EE
Confidence            44

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.57  E-value=1.5e-13  Score=90.47  Aligned_cols=76  Identities=24%  Similarity=0.472  Sum_probs=63.4

Q ss_pred             eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeCCE
Q psy15206        127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDGE  203 (232)
Q Consensus       127 ~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g~  203 (232)
                      +|.|.+++..|.|.|.|.+.+..+. ....+.|.|..+|.+...+.......|+.+.|.|.+.|+++  +.|.|+++|.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~   79 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP   79 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence            5899999999999999999887665 66778899999999877766555557889999999999644  3799999974

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.56  E-value=6.1e-14  Score=81.26  Aligned_cols=70  Identities=31%  Similarity=0.606  Sum_probs=57.8

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      |+.+.|.|.+.|.|.|.+.|++++..+....+... .+++|.|.++..+|.|.|.|.+.|..|. ......|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l   71 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGK-ANSTGVL   71 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCc-eeEEEEE
Confidence            57899999999999999999999987765555544 5678999999999999999999999887 4344444

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.56  E-value=7.3e-14  Score=83.78  Aligned_cols=80  Identities=26%  Similarity=0.502  Sum_probs=67.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      .+....+..|+.+.|.|.+.|.|.|.+.|++++..+....+....++.|.|.++..+|.|.|.|.+.|..|. ....+.|
T Consensus         5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l   83 (85)
T cd05728           5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGT-IYASAEL   83 (85)
T ss_pred             cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCe-EEEEEEE
Confidence            455677889999999999999999999999999987665566667789999999999999999999998887 4444444


Q ss_pred             E
Q psy15206        160 K  160 (232)
Q Consensus       160 ~  160 (232)
                      .
T Consensus        84 ~   84 (85)
T cd05728          84 A   84 (85)
T ss_pred             E
Confidence            3

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.56  E-value=5.7e-14  Score=81.97  Aligned_cols=72  Identities=32%  Similarity=0.668  Sum_probs=58.9

Q ss_pred             cCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE-EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         88 EGQSVQLECHAEGHPIPTISWRRENNAILPNGQT-IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      +|+.+.|.|.+.|.|.|.+.|++++..+....+. ....+.|.|.++..+|.|.|.|.+.|..|. ....+.|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGS-QRTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCc-eeEEEEEe
Confidence            5889999999999999999999999887554333 334678999999999999999999999887 44444443

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.56  E-value=1.6e-13  Score=83.68  Aligned_cols=79  Identities=27%  Similarity=0.497  Sum_probs=63.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-----CCeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQNGIGRGAR  154 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  154 (232)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+....     ...|.|.++..+|+|.|+|.+.|..|. ..
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~   85 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG-ET   85 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCc-ce
Confidence            455577889999999999999999999999999887655443321     237999999999999999999998887 43


Q ss_pred             eEEEE
Q psy15206        155 RKIEV  159 (232)
Q Consensus       155 ~~~~l  159 (232)
                      ..+.+
T Consensus        86 ~~~~v   90 (92)
T cd05737          86 VDVTV   90 (92)
T ss_pred             EEEEE
Confidence            44443

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.54  E-value=1.9e-13  Score=84.21  Aligned_cols=81  Identities=22%  Similarity=0.350  Sum_probs=65.3

Q ss_pred             CCceEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCcEE-e--------eCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTI-F--------TGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~-~--------~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .....+..|+++.|.|.+.| .|+|.+.|+|+|..+....... .        ..+.|.|..+..+|+|.|+|.+.|..|
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            45567888999999999999 8888999999998876433322 1        136799999999999999999999988


Q ss_pred             CceeeEEEEEEE
Q psy15206        151 RGARRKIEVKVE  162 (232)
Q Consensus       151 ~~~~~~~~l~v~  162 (232)
                      . ....+.|.|.
T Consensus        90 ~-~~~t~~L~V~  100 (101)
T cd04975          90 S-KSLTFELYVN  100 (101)
T ss_pred             c-EEEEEEEEEE
Confidence            7 6666666664

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.54  E-value=2.1e-13  Score=80.02  Aligned_cols=72  Identities=26%  Similarity=0.547  Sum_probs=58.4

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCCCC---cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      |+.+.|.|.+.|.|.|.+.|+++|..+....   +.....+.|.|.++..+|+|.|.|.+.|..|. ......|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGN-LLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCe-EEEEEEEEE
Confidence            6789999999999999999999998775422   34445678999999999999999999998887 444555543

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.54  E-value=4.6e-14  Score=85.09  Aligned_cols=68  Identities=16%  Similarity=0.301  Sum_probs=57.0

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe-----EEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY-----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~-----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+.+..+..|+.+.|.|.+.|.|.|.++|+|++..+....+     ..|.+.++..+|+|.|.|.|.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   73 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAE   73 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEE
Confidence            46777788888899999999999999999999999999876644322     357778888899999999974

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.53  E-value=4.3e-13  Score=81.23  Aligned_cols=80  Identities=26%  Similarity=0.442  Sum_probs=65.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      .+....+.+|+++.|.|.+.|. .|.+.|++++..+.... ...  ..+.|.|.++..+|.|.|.|.+.|..|...+..+
T Consensus         9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~   86 (91)
T cd05740           9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPY   86 (91)
T ss_pred             ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeE
Confidence            3445678899999999999999 89999999998765432 322  3468999999999999999999999988666676


Q ss_pred             EEEE
Q psy15206        158 EVKV  161 (232)
Q Consensus       158 ~l~v  161 (232)
                      .|.|
T Consensus        87 ~L~V   90 (91)
T cd05740          87 ILNV   90 (91)
T ss_pred             EEEe
Confidence            6665

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.52  E-value=3.8e-13  Score=79.46  Aligned_cols=69  Identities=28%  Similarity=0.521  Sum_probs=58.5

Q ss_pred             CceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ....+.+|+.+.|.|.+.+. .+.+.|+++|..+....+.......|.|.++..+|+|.|.|.+.|..|.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~   70 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGS   70 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCc
Confidence            34567789999999999885 5689999999888766566666778999999999999999999988766

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.52  E-value=6e-13  Score=81.12  Aligned_cols=83  Identities=31%  Similarity=0.661  Sum_probs=66.0

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      +|.+.. .+....+..|+.+.|.|.+.|.|.+.+.|++++..+....+....    .+.|.|.++..+|.|.|.|.+.|.
T Consensus         3 ~~~~~~-~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           3 PATILT-KPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCcccc-cCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            344443 567788999999999999999999999999999877654444332    348999999999999999999998


Q ss_pred             CCCceeeEE
Q psy15206        149 IGRGARRKI  157 (232)
Q Consensus       149 ~~~~~~~~~  157 (232)
                      .|. ....+
T Consensus        82 ~G~-~~~~~   89 (92)
T cd05747          82 EGK-QEAQF   89 (92)
T ss_pred             CCC-EeEEE
Confidence            887 43333

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.51  E-value=3.5e-13  Score=81.20  Aligned_cols=76  Identities=33%  Similarity=0.555  Sum_probs=61.7

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCCCC-cEEee--------CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFT--------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~--------~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      |+.+.|.|.+.|.|++.+.|++++..+.... ++...        .+.|.|.++...|.|.|+|.+.|..|. ....+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE-DRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc-ceEEEEE
Confidence            6889999999999999999999997764332 32221        157999999999999999999999998 6677888


Q ss_pred             EEEecc
Q psy15206        160 KVEFAP  165 (232)
Q Consensus       160 ~v~~~p  165 (232)
                      .|..+|
T Consensus        80 ~V~~~P   85 (88)
T cd05735          80 TVQEPP   85 (88)
T ss_pred             EEeCCC
Confidence            887665

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.50  E-value=3e-13  Score=78.04  Aligned_cols=69  Identities=26%  Similarity=0.490  Sum_probs=56.7

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      +.|.|.+.|.|.|.+.|+++|..+....+.....+.|.|.++...|+|.|+|.+.|..|. ....+.+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAK-LEKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCcc-EEEEEEEEE
Confidence            368999999999999999999988666555666788999999999999999999998776 444444443

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.50  E-value=8.3e-13  Score=81.46  Aligned_cols=79  Identities=25%  Similarity=0.383  Sum_probs=63.6

Q ss_pred             ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe----------eCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----------TGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+........          ..+.|.|.++..+|.|.|+|.+.|..|. 
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~-   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV-   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce-
Confidence            56677899999999999999999999999998765433211          1357999999999999999999999877 


Q ss_pred             eeeEEEEEEE
Q psy15206        153 ARRKIEVKVE  162 (232)
Q Consensus       153 ~~~~~~l~v~  162 (232)
                      .+..+.+.|.
T Consensus        91 ~~~t~~l~V~  100 (101)
T cd05859          91 KSYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            5556666553

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.50  E-value=8.5e-13  Score=79.12  Aligned_cols=77  Identities=27%  Similarity=0.493  Sum_probs=61.8

Q ss_pred             ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-GQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+... .+....    .+.|.|.++..+|+|.|.|.+.|..|. ....+
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~   82 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGE-DHASL   82 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCc-EEEEE
Confidence            356778999999999999999999999999887543 233222    357999999999999999999999987 54555


Q ss_pred             EEE
Q psy15206        158 EVK  160 (232)
Q Consensus       158 ~l~  160 (232)
                      .|.
T Consensus        83 ~l~   85 (86)
T cd05894          83 FVK   85 (86)
T ss_pred             EEE
Confidence            543

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.50  E-value=2.6e-13  Score=76.74  Aligned_cols=65  Identities=23%  Similarity=0.441  Sum_probs=52.9

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      +.|.|.+.|.|.|.+.|+++|..+...    ...+.|.|.++..+|+|.|+|.+.|..|. ....+.+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAG-LEKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCcc-EEEEEEEEE
Confidence            468999999999999999999887532    23568999999999999999999999886 444544443

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.49  E-value=5.8e-13  Score=77.99  Aligned_cols=72  Identities=28%  Similarity=0.472  Sum_probs=57.6

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCCCC---cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      |+.+.|.|.+.|.|.|.+.|+++|..+....   ......+.|.|.++...|.|.|.|.+.|..|. ....+.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEEe
Confidence            6789999999999999999999998874321   22334568999999999999999999999887 545555554

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.48  E-value=1.5e-12  Score=78.49  Aligned_cols=80  Identities=31%  Similarity=0.606  Sum_probs=62.9

Q ss_pred             CCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCC-CcE-EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206         81 PQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPN-GQT-IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~-~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .+. ....+.|.|.++..+|.|.|.|.+.|..|...+..+
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~   82 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAA   82 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence            456677899999999998 68889999999999887542 222 223578999999999999999999998887555444


Q ss_pred             EEE
Q psy15206        158 EVK  160 (232)
Q Consensus       158 ~l~  160 (232)
                      .+.
T Consensus        83 ~l~   85 (86)
T cd05724          83 RLS   85 (86)
T ss_pred             EEE
Confidence            443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.48  E-value=1.2e-12  Score=80.02  Aligned_cols=81  Identities=27%  Similarity=0.443  Sum_probs=60.6

Q ss_pred             CCceEeecCCcEEEEeeeccCCC-CeEEEEe-CCeeeCCCC-cEEe-e----CCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPI-PTISWRR-ENNAILPNG-QTIF-T----GSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~-~~~~~~~~~-~~~~-~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      +....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.... +... .    .+.|.|.++..+|.|.|+|.+.|..+..
T Consensus         7 p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~   86 (96)
T cd05865           7 PSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGE   86 (96)
T ss_pred             CCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCc
Confidence            44556778999999999999984 7999998 665554322 3222 1    2579999999999999999999986443


Q ss_pred             eeeEEEEEE
Q psy15206        153 ARRKIEVKV  161 (232)
Q Consensus       153 ~~~~~~l~v  161 (232)
                      ....+.|.|
T Consensus        87 ~~~s~~l~v   95 (96)
T cd05865          87 SEATVNVKI   95 (96)
T ss_pred             EEEEEEEEE
Confidence            666666654

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.48  E-value=3.8e-13  Score=82.71  Aligned_cols=67  Identities=12%  Similarity=0.166  Sum_probs=56.1

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.+...+.+..+..|+.+.|.|.+.|.|.+.+.|+|+|..+..+.         ...|.+.++...|+|.|+|.|.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~   76 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVE   76 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEE
Confidence            455667778889999999999999999999999999998876433         3456777888899999999974

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.48  E-value=8.4e-13  Score=76.29  Aligned_cols=69  Identities=28%  Similarity=0.654  Sum_probs=55.5

Q ss_pred             cEEEEeeeccCCCCeEEEEeCCeeeCCCCcEE-eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         91 SVQLECHAEGHPIPTISWRRENNAILPNGQTI-FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        91 ~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      .+.|.|.+.|.|.|.+.|++++..+....+.. ...+.|.|.++..+|.|.|+|.+.|..|. ....+.|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGN-VQASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCE-EEEEEEEE
Confidence            37899999999999999999998876554433 34567899999999999999999999887 44444443

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.48  E-value=8.9e-13  Score=76.73  Aligned_cols=70  Identities=31%  Similarity=0.613  Sum_probs=57.3

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      |+.+.|.|.+.|.|.+.+.|++++..+....+... ..+.|.|.++..+|.|.|+|.+.|..|. ....+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l   71 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGK-ANSTGSL   71 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCc-eEEEEEE
Confidence            67899999999999999999999988765544433 3468999999999999999999999887 4444444

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.47  E-value=9.8e-13  Score=77.29  Aligned_cols=72  Identities=33%  Similarity=0.527  Sum_probs=58.3

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCCCC---cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      |+.+.|.|.+.|.|.|.+.|++++..+....   ......+.|.|.++..+|.|.|.|.+.|..|. ....+.+.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGY-LLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCe-EEEeEEEEE
Confidence            6789999999999999999999998775433   23445678999999999999999999998887 445555544

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.47  E-value=2.9e-12  Score=77.92  Aligned_cols=71  Identities=28%  Similarity=0.528  Sum_probs=56.3

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCC-CCcEEeeCCeEEECCCC-CCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILP-NGQTIFTGSTLQIPRIT-KEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      +..+.|.|.+.|.|.|.+.|++++..+.. ..+....++.|.|.++. .+|.|.|.|.+.|..|...+..+.|
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            34799999999999999999999987643 33455567889999885 6899999999999988755444433

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.47  E-value=3.9e-12  Score=77.67  Aligned_cols=80  Identities=26%  Similarity=0.453  Sum_probs=60.2

Q ss_pred             CCCceEeecC---CcEEEEeeeccCCCCeEEEEeCCeeeCCC--CcEEeeCCeEEECCCC-CCCCeEEEEEeEeCCCCce
Q psy15206         80 SPQLSVAKEG---QSVQLECHAEGHPIPTISWRRENNAILPN--GQTIFTGSTLQIPRIT-KEDRGAYYCVAQNGIGRGA  153 (232)
Q Consensus        80 ~~~~~~~~~g---~~~~l~C~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~~~~~  153 (232)
                      .+....+.+|   +.+.|.|.+.|.|.+.++|+++|..+...  .+.....+.|.|.++. ..|.|.|.|.+.|..|...
T Consensus         7 ~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~   86 (94)
T cd05850           7 QPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVV   86 (94)
T ss_pred             CCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEE
Confidence            3444444444   57999999999999999999999887532  2344556789998765 6999999999999998755


Q ss_pred             eeEEEE
Q psy15206        154 RRKIEV  159 (232)
Q Consensus       154 ~~~~~l  159 (232)
                      +..+.|
T Consensus        87 s~~a~l   92 (94)
T cd05850          87 SREANL   92 (94)
T ss_pred             EEEEEE
Confidence            544443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.47  E-value=1.1e-12  Score=77.76  Aligned_cols=75  Identities=20%  Similarity=0.339  Sum_probs=59.8

Q ss_pred             CcEEEEeeeccC--CCCeEEEEeCCeeeCCC--C-cEEe-----eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         90 QSVQLECHAEGH--PIPTISWRRENNAILPN--G-QTIF-----TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        90 ~~~~l~C~~~~~--~~~~~~W~~~~~~~~~~--~-~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      +++.|.|.+.+.  +.+.+.|+++|..+...  . ++..     ..+.|.|.+++..|+|.|+|.+.+..+. ......|
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~-~~a~a~L   79 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDK-LSAAADL   79 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCc-eEEEEEE
Confidence            468899999764  46789999999988532  2 3322     3468999999999999999999999887 6778888


Q ss_pred             EEEecc
Q psy15206        160 KVEFAP  165 (232)
Q Consensus       160 ~v~~~p  165 (232)
                      .|..||
T Consensus        80 ~V~~pP   85 (85)
T cd05853          80 IVRGPP   85 (85)
T ss_pred             EEecCC
Confidence            888776

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.47  E-value=4.6e-13  Score=81.65  Aligned_cols=68  Identities=13%  Similarity=0.364  Sum_probs=57.1

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.+         ..|.+.++...|+|.|.|.|+
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   79 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE   79 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence            56777778888999999999999999999999999999987654332         356667788899999999874

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.47  E-value=1.4e-12  Score=78.39  Aligned_cols=76  Identities=21%  Similarity=0.486  Sum_probs=60.1

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE---E--eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT---I--FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      ..+..|+.+.|.|.+.|.|.+.+.|++++..+......   .  .....|.|.++..+|.|.|+|.+.|..|. ....+.
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCE-EEEEEE
Confidence            45668999999999999999999999999887543321   1  12346899999999999999999999887 545555


Q ss_pred             EE
Q psy15206        159 VK  160 (232)
Q Consensus       159 l~  160 (232)
                      |.
T Consensus        83 l~   84 (85)
T cd05857          83 LD   84 (85)
T ss_pred             EE
Confidence            54

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.46  E-value=1.3e-12  Score=78.96  Aligned_cols=80  Identities=23%  Similarity=0.415  Sum_probs=62.6

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeC-CeeeCCCCcEEee-CC---eEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE-NNAILPNGQTIFT-GS---TLQIPRITKEDRGAYYCVAQNGIGRGARR  155 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~-~~---~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  155 (232)
                      +....+..|+++.|.|.+.|.|. .+.|+++ +..+....+.... ++   .|.|.++..+|.|.|+|.+.|..|....+
T Consensus         7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   85 (92)
T cd05866           7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEA   85 (92)
T ss_pred             ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEE
Confidence            44567778999999999999887 8999985 5555444444332 22   79999999999999999999998886666


Q ss_pred             EEEEEE
Q psy15206        156 KIEVKV  161 (232)
Q Consensus       156 ~~~l~v  161 (232)
                      .+.|.+
T Consensus        86 ~i~l~~   91 (92)
T cd05866          86 TVVLEI   91 (92)
T ss_pred             EEEEEE
Confidence            666654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.46  E-value=8.6e-13  Score=75.91  Aligned_cols=68  Identities=29%  Similarity=0.697  Sum_probs=53.9

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      +.|.|.+.|.|.|.+.|++++..+..........+.|.|.++..+|.|.|+|.+.|..|. ......|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK-IEASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCc-EEEEEEEE
Confidence            468999999999999999998766444333445678999999999999999999999887 44444443

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.46  E-value=9.5e-13  Score=76.52  Aligned_cols=68  Identities=32%  Similarity=0.522  Sum_probs=52.9

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEe-e-C-C--eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPN-GQTIF-T-G-S--TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~-~-~-~--~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      +.|.|.+.|.|.|.+.|++++..+... .++.. . . +  +|.|.++..+|.|.|+|.+.|..|. ......|.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~a~L~   74 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGV-ATCHARLD   74 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCe-EEEEEEEe
Confidence            468999999999999999999887643 33322 1 1 2  7999999999999999999999887 44444443

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.46  E-value=3.2e-12  Score=80.22  Aligned_cols=77  Identities=21%  Similarity=0.362  Sum_probs=60.8

Q ss_pred             cCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC-cEEe--------eCCeEEECCCC-CCCCeEEEEEeEeCCCCceeeEE
Q psy15206         88 EGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIF--------TGSTLQIPRIT-KEDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~--------~~~~l~i~~~~-~~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      .|..+.|.|.+.|.|.+.+.|++++..+.... ++..        ..+.|.|.++. .+|.|.|+|.+.|..|. ....+
T Consensus        22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~i  100 (109)
T cd05773          22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE-DSLDI  100 (109)
T ss_pred             CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc-CcEEE
Confidence            45789999999999999999999998875322 2211        13579999987 58999999999999988 56777


Q ss_pred             EEEEEecc
Q psy15206        158 EVKVEFAP  165 (232)
Q Consensus       158 ~l~v~~~p  165 (232)
                      .|.+..+|
T Consensus       101 ~L~~~~~p  108 (109)
T cd05773         101 QLVSTSRP  108 (109)
T ss_pred             EEEecCCC
Confidence            88777655

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.46  E-value=2.4e-12  Score=78.56  Aligned_cols=70  Identities=31%  Similarity=0.590  Sum_probs=55.9

Q ss_pred             cCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEeeCCeEEECCCC-CCCCeEEEEEeEeCCCCceeeEE
Q psy15206         88 EGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTGSTLQIPRIT-KEDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      +|+.+.|.|.+.|.|.|.+.|++++..+....  +....++.|.|.++. ..|.|.|.|.+.|..|...+..+
T Consensus        18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~   90 (94)
T cd05848          18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREA   90 (94)
T ss_pred             CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccE
Confidence            47899999999999999999999998875322  334456789998875 69999999999999887544433

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.46  E-value=1.9e-12  Score=77.40  Aligned_cols=75  Identities=25%  Similarity=0.367  Sum_probs=59.3

Q ss_pred             CcEEEEeeeccCCCC--eEEEEeCCeeeCCCC---cE-E----eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         90 QSVQLECHAEGHPIP--TISWRRENNAILPNG---QT-I----FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        90 ~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~---~~-~----~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      +.+.|.|.+.|.|.|  .+.|++++..+....   ++ .    ...+.|.|.+++..|.|.|+|.+.|..|. ....+.|
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~-~~~~~~L   79 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDS-ASASATL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCC-EEEEEEE
Confidence            468999999998877  589999998764321   21 1    12468999999999999999999999887 6678888


Q ss_pred             EEEecc
Q psy15206        160 KVEFAP  165 (232)
Q Consensus       160 ~v~~~p  165 (232)
                      .|..+|
T Consensus        80 ~V~~~P   85 (85)
T cd05854          80 VVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            887765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.46  E-value=2.2e-12  Score=80.11  Aligned_cols=87  Identities=30%  Similarity=0.665  Sum_probs=62.1

Q ss_pred             cEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-----Cc-EEeeCCeEEE-----CCCCCCCCeEEE
Q psy15206         74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-----GQ-TIFTGSTLQI-----PRITKEDRGAYY  142 (232)
Q Consensus        74 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-----~~-~~~~~~~l~i-----~~~~~~~~g~y~  142 (232)
                      |.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|+++|..+...     .. .....+.+.+     ..+..+|.|.|+
T Consensus         2 P~i~~-~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           2 PRIVE-HPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CeEEe-cCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            44443 566778889999999999999999999999999877541     11 1122232222     234689999999


Q ss_pred             EEeEeCCCCceeeEEEEEE
Q psy15206        143 CVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus       143 C~~~~~~~~~~~~~~~l~v  161 (232)
                      |.+.|..|...+..+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            9999998875656665554

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.46  E-value=2.6e-12  Score=77.97  Aligned_cols=78  Identities=28%  Similarity=0.557  Sum_probs=61.6

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEE----eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI----FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK  156 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~----~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  156 (232)
                      +....+..|+.+.|.|.+.|.|.|.+.|++++..+.......    .....|.|.++..+|.|.|.|.+.|..|. ....
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~-~~~~   85 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQ-ANVS   85 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCc-eeEE
Confidence            445567889999999999999999999999998765433321    12347999999999999999999999887 4444


Q ss_pred             EEE
Q psy15206        157 IEV  159 (232)
Q Consensus       157 ~~l  159 (232)
                      +.|
T Consensus        86 ~~L   88 (90)
T cd04972          86 VQV   88 (90)
T ss_pred             EEE
Confidence            444

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.45  E-value=3.4e-12  Score=78.33  Aligned_cols=79  Identities=35%  Similarity=0.642  Sum_probs=63.7

Q ss_pred             ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-GQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      ...+..|+.+.|.|.+.|.|.+.+.|++++..+... .....  ..+.|.|.++..+|.|.|+|.+.|..|. ....+.|
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L   90 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE-QEAEIHL   90 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEE
Confidence            446778999999999999999999999999877543 22222  2457999999999999999999999887 5566666


Q ss_pred             EEE
Q psy15206        160 KVE  162 (232)
Q Consensus       160 ~v~  162 (232)
                      .|.
T Consensus        91 ~V~   93 (95)
T cd05730          91 KVF   93 (95)
T ss_pred             EEE
Confidence            664

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.45  E-value=2e-12  Score=74.07  Aligned_cols=61  Identities=28%  Similarity=0.599  Sum_probs=50.3

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      |+.+.|.|.+.|.|.|.+.|++++..+............|.|.++.  |.|.|+|.+.|..|.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~   61 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGM   61 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCE
Confidence            5789999999999999999999998875544444445578888874  789999999999886

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.44  E-value=1.4e-12  Score=76.37  Aligned_cols=65  Identities=14%  Similarity=0.308  Sum_probs=51.0

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.+...|....+.+|++++|.|.+.+.|.+ .+.|+|||..+.... -.+.+.++ .+|+|.|+|.|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~~-~~l~i~~~-~~dsG~Y~C~a~   66 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETTT-NSYRIRAA-NNDSGEYRCQTQ   66 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeeccC-CeEEEeec-ccCCEEeEEECC
Confidence            456677777889999999999999998764 699999999884322 23445555 899999999974

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.44  E-value=1.8e-12  Score=74.25  Aligned_cols=59  Identities=31%  Similarity=0.508  Sum_probs=50.2

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      +.|.|.+.|.|.|.+.|++++..+.... ....+..|.|.++..+|.|.|+|.+.|..|.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~   59 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH-TFKRGVHLTIYEVTEKDAGNYTVVLTNPITK   59 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCC-EEccCCEEEECcCCHHHCEEEEEEEEECCCc
Confidence            3689999999999999999999876543 2334567999999999999999999999886

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.44  E-value=2.2e-12  Score=76.10  Aligned_cols=75  Identities=23%  Similarity=0.421  Sum_probs=58.4

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      .+....+..|+.+.|.|.+.|.|.| .+.|+++|..+..  ......+.|.|..+  .|.|.|.|.+.|..|...+....
T Consensus         4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~   79 (81)
T cd05749           4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGT   79 (81)
T ss_pred             CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEE
Confidence            4566788899999999999999999 7999999987743  12234567888877  47799999999998874444333

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.43  E-value=1.7e-12  Score=74.61  Aligned_cols=60  Identities=37%  Similarity=0.713  Sum_probs=51.6

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      +.|.|.+.|.|.|.+.|++++..+....+... ..+.|.|.++..+|.|.|.|.+.|..|.
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   61 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGY   61 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCc
Confidence            46899999999999999999988765544433 4678999999999999999999999887

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.43  E-value=4.1e-12  Score=77.28  Aligned_cols=79  Identities=25%  Similarity=0.468  Sum_probs=62.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eC---CeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TG---STLQIPRITKEDRGAYYCVAQNGIGRGAR  154 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~---~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  154 (232)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....++..  ..   ++|.|.++..+|.|.|.|.+.|..|. ..
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~   85 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGG-ET   85 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCc-ee
Confidence            35567888999999999999999999999999987755443322  11   37999999999999999999998887 43


Q ss_pred             eEEEE
Q psy15206        155 RKIEV  159 (232)
Q Consensus       155 ~~~~l  159 (232)
                      ..+.+
T Consensus        86 ~~~~v   90 (92)
T cd05891          86 VDVTV   90 (92)
T ss_pred             eEEEE
Confidence            43333

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.43  E-value=2.4e-12  Score=78.99  Aligned_cols=81  Identities=33%  Similarity=0.585  Sum_probs=62.3

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc---EEeeCCeEEECCC-----CCCCCeEEEEEeEeC-CC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---TIFTGSTLQIPRI-----TKEDRGAYYCVAQNG-IG  150 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~l~i~~~-----~~~~~g~y~C~~~~~-~~  150 (232)
                      .+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.....   ....++.+.|.++     ...|.|.|.|.+.|. .|
T Consensus         5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G   84 (95)
T cd05722           5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLG   84 (95)
T ss_pred             CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccC
Confidence            45556777899999999999999999999999987754322   2334556777665     588999999999999 88


Q ss_pred             CceeeEEEEE
Q psy15206        151 RGARRKIEVK  160 (232)
Q Consensus       151 ~~~~~~~~l~  160 (232)
                      ...+..+.+.
T Consensus        85 ~~~s~~~~l~   94 (95)
T cd05722          85 SIVSRTARLT   94 (95)
T ss_pred             cEEEeeeEEe
Confidence            7656665554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.43  E-value=3.3e-12  Score=77.69  Aligned_cols=80  Identities=35%  Similarity=0.688  Sum_probs=65.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARR  155 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  155 (232)
                      .+....+.+|+++.|.|.+.+.|.+.+.|++++..+....+....    ...|.|.++..+|.|.|+|.+.+..|. ...
T Consensus         6 ~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~-~~~   84 (90)
T PF07679_consen    6 KPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGE-ATA   84 (90)
T ss_dssp             ESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEE-EEE
T ss_pred             ecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCE-EEE
Confidence            456778889999999999999999999999999888765554332    457999999999999999999998665 444


Q ss_pred             EEEEE
Q psy15206        156 KIEVK  160 (232)
Q Consensus       156 ~~~l~  160 (232)
                      .+.|.
T Consensus        85 ~~~l~   89 (90)
T PF07679_consen   85 SVNLT   89 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.43  E-value=2.3e-12  Score=77.38  Aligned_cols=75  Identities=24%  Similarity=0.371  Sum_probs=59.1

Q ss_pred             CcEEEEeeeccCCCC--eEEEEeCCeeeCCCCc---E-----EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         90 QSVQLECHAEGHPIP--TISWRRENNAILPNGQ---T-----IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        90 ~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~---~-----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      +++.|.|.+.+.|.+  .+.|+++|..+.....   .     ....+.|.|.+++..|+|.|+|.+.|..|. ......|
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l   79 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASADL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCc-EEEEEEE
Confidence            468999999998877  5789999987643221   1     123568999999999999999999998877 6677888


Q ss_pred             EEEecc
Q psy15206        160 KVEFAP  165 (232)
Q Consensus       160 ~v~~~p  165 (232)
                      .|..+|
T Consensus        80 ~V~~pP   85 (85)
T cd04970          80 IVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            887765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.43  E-value=1.6e-12  Score=75.62  Aligned_cols=68  Identities=34%  Similarity=0.561  Sum_probs=52.7

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEee-CC----eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPN-GQTIFT-GS----TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~-~~----~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      +.|.|.+.|.|.|.+.|++++..+... .+.... ..    .|.|.++..+|.|.|+|.+.|..|. ......|.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~   74 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGI-VSCTARLD   74 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCE-EEEEEEEe
Confidence            468999999999999999999887543 233332 21    5999999999999999999999887 44444443

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.43  E-value=2.2e-12  Score=78.46  Aligned_cols=67  Identities=18%  Similarity=0.444  Sum_probs=57.7

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC---------CeEEEEEeccccCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND---------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.+...+.+..+..|+++.|.|.+.+.|.+.+.|+++|..+..+         ....|.+.++...|+|.|.|.|.
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   76 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVAS   76 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEE
Confidence            56677788889999999999999999999999999999888754         34567777888899999999974

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.42  E-value=1.6e-12  Score=75.08  Aligned_cols=69  Identities=38%  Similarity=0.707  Sum_probs=54.9

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCCCc-EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      +.|.|.+.|.|.|.+.|++++..+..... .....+.|.|.++...|.|.|.|.+.|..|. ....+.+.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGS-ARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence            46899999999999999999876644322 2234578999999999999999999999887 555555554

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.42  E-value=2.2e-12  Score=75.16  Aligned_cols=70  Identities=30%  Similarity=0.520  Sum_probs=55.3

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeC--CCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAIL--PNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~--~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      +.|.|.+.|.|.|.+.|++++..+.  ...+... .++.|.|.++..+|.|.|.|.+.|..|...+....+.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4689999999999999999988764  2223322 35689999999999999999999998875555555554

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.42  E-value=4e-12  Score=74.18  Aligned_cols=69  Identities=29%  Similarity=0.556  Sum_probs=55.1

Q ss_pred             cEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         91 SVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        91 ~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      .+.|.|.+.|.|.|.+.|++++..+....+....    .+.|.|.++...|+|.|+|.+.|..|. ....+.+.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~   73 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE-KSATINVK   73 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc-EEEEEEEE
Confidence            3689999999999999999999887544443322    357999999999999999999999887 54555443

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.41  E-value=4.9e-13  Score=75.63  Aligned_cols=50  Identities=26%  Similarity=0.517  Sum_probs=43.4

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecC-CCeEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVN-DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~-~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|||..+.. .....|.+.++..+|+|.|+|.|+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~   51 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLW   51 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEE
Confidence            47899999999999999999998863 244588888999999999999984

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.41  E-value=2.9e-12  Score=76.47  Aligned_cols=75  Identities=31%  Similarity=0.563  Sum_probs=58.2

Q ss_pred             EeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      ....|+.+.|.|.+.+.|.|.+.|++++..+........  ....|.|.++..+|+|.|.|.+.|..|. ....+.+.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~   81 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE-INATYKVD   81 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCcc-EEEEEEEe
Confidence            445699999999999999999999999887644332222  2357999999999999999999998886 44444443

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.41  E-value=6.9e-12  Score=77.19  Aligned_cols=77  Identities=30%  Similarity=0.625  Sum_probs=57.3

Q ss_pred             ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-----CcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-----GQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGA  153 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~  153 (232)
                      ......|+.+.|.|.+.|.|.|.++|++++..+...     .+....    .+.|.|.++..+|.|.|.|.+.|..|. .
T Consensus        11 ~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~   89 (97)
T cd05869          11 QTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQ-D   89 (97)
T ss_pred             ceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCC-e
Confidence            334445899999999999999999999987655321     111111    247999999999999999999999887 4


Q ss_pred             eeEEEEE
Q psy15206        154 RRKIEVK  160 (232)
Q Consensus       154 ~~~~~l~  160 (232)
                      ...+.|.
T Consensus        90 ~~~~~l~   96 (97)
T cd05869          90 SQSMYLE   96 (97)
T ss_pred             eEEEEEE
Confidence            4444443

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.40  E-value=9.4e-12  Score=76.75  Aligned_cols=79  Identities=29%  Similarity=0.582  Sum_probs=59.2

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeCC-----CCcEEee----CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAILP-----NGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~~-----~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++.  +..+..     ..++...    ...|.|.++..+|.|.|.|.+.|..
T Consensus         8 ~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   87 (98)
T cd05870           8 LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI   87 (98)
T ss_pred             eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence            4567888999999999999999999999994  333221     1122221    3479999999999999999999998


Q ss_pred             CCceeeEEEEE
Q psy15206        150 GRGARRKIEVK  160 (232)
Q Consensus       150 ~~~~~~~~~l~  160 (232)
                      |. ....+.|.
T Consensus        88 G~-~~~~~~l~   97 (98)
T cd05870          88 GG-HQKSMYLD   97 (98)
T ss_pred             Cc-ceeEEEEe
Confidence            87 43444443

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.40  E-value=4.1e-12  Score=74.63  Aligned_cols=70  Identities=30%  Similarity=0.647  Sum_probs=54.0

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCCC-cEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCce-eeEEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPNG-QTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGA-RRKIEVKV  161 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~-~~~~~l~v  161 (232)
                      +.|.|.+.|.|.|.+.|+++|..+.... ....  ..+.|.|.++..+|.|.|.|.+.|..|... ...+.|.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            4789999999999999999998875432 2222  245899999999999999999999888632 34555554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.40  E-value=1.5e-12  Score=80.24  Aligned_cols=61  Identities=21%  Similarity=0.320  Sum_probs=50.3

Q ss_pred             cceeeeeccCeEEEEEEeec-CCCCeEEEeeCCEEecCCCe--------------EEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEA-YPHPILYWAKDGEIVVNDEY--------------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~~~~~--------------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .....+..|+++.|.|.+.| .|+|.+.|+|||..+.....              ..|.+..+..+|+|.|+|.|+
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~   85 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLAS   85 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEE
Confidence            34567889999999999999 88899999999988764322              346677788899999999884

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.40  E-value=2.2e-12  Score=73.99  Aligned_cols=58  Identities=21%  Similarity=0.352  Sum_probs=48.7

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPN-GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +.|.|.+.|.|.|.+.|++++.++... ......+.+|.|.++..+|+|.|+|.+.+..
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~   59 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQ   59 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccc
Confidence            368999999999999999999887554 3344455689999999999999999999864

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.40  E-value=1.8e-12  Score=78.32  Aligned_cols=67  Identities=15%  Similarity=0.251  Sum_probs=54.7

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----CeEEEEEeccccCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+...     ....|.+.++..+|+|.|.|.+.
T Consensus         2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   73 (88)
T cd04968           2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAE   73 (88)
T ss_pred             CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEE
Confidence            44556677778889999999999999999999999987765432     23567778888999999999874

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.39  E-value=6.3e-12  Score=73.34  Aligned_cols=68  Identities=29%  Similarity=0.471  Sum_probs=52.7

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEe-eC----CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPN-GQTIF-TG----STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~-~~----~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      +.|.|.+.|.|.|.+.|++++..+... .+... ..    ..|.|.+++.+|.|.|+|.+.|..|. ....+.|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV-VSCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCc-EEEEEEEe
Confidence            468999999999999999999887643 23322 11    16999999999999999999999887 44444443

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.39  E-value=6.6e-12  Score=76.18  Aligned_cols=74  Identities=28%  Similarity=0.535  Sum_probs=58.5

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeC--------CCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAIL--------PNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~--------~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      |+.+.|.|.+.|.|.|.+.|++++....        ...++.. ..+.|.|.++..+|.|.|.|.+.|..|. ....+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l   79 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYL   79 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEE
Confidence            6789999999999999999999886431        1223332 3568999999999999999999999887 5566777


Q ss_pred             EEEe
Q psy15206        160 KVEF  163 (232)
Q Consensus       160 ~v~~  163 (232)
                      .|..
T Consensus        80 ~V~~   83 (90)
T cd05726          80 EVTD   83 (90)
T ss_pred             EEee
Confidence            7764

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.39  E-value=3e-12  Score=78.03  Aligned_cols=61  Identities=20%  Similarity=0.375  Sum_probs=50.4

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC----------eEEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE----------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |....+.+|+++.|.|.+.|.|.|.+.|+|+|..+....          ...|.+.++..+|+|.|+|.|.
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   78 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVK   78 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEE
Confidence            445678899999999999999999999999998765332          3457777888899999999874

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.38  E-value=6.7e-12  Score=76.39  Aligned_cols=77  Identities=21%  Similarity=0.283  Sum_probs=58.7

Q ss_pred             ceEeecCCcEEEEeeecc-----CCCCeEEEEeCCeeeCC----CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206         83 LSVAKEGQSVQLECHAEG-----HPIPTISWRRENNAILP----NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA  153 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~-----~~~~~~~W~~~~~~~~~----~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~  153 (232)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|++++..+..    ..+....++.|.|.++..+|+|.|.|.+.|..|. .
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~-~   86 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYC-M   86 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCcc-E
Confidence            346668999999999988     57788999999866432    1233334678999999999999999999998776 4


Q ss_pred             eeEEEEE
Q psy15206        154 RRKIEVK  160 (232)
Q Consensus       154 ~~~~~l~  160 (232)
                      ...+.|.
T Consensus        87 ~~~~~L~   93 (94)
T cd05756          87 KVSISLT   93 (94)
T ss_pred             EEEEEEE
Confidence            3444443

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.38  E-value=1.5e-12  Score=75.99  Aligned_cols=54  Identities=20%  Similarity=0.496  Sum_probs=45.5

Q ss_pred             ccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe------EEEEEeccccCCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|+.+.|.|.+.|.|.|.+.|+|+|..+....+      -.|.+.++...|+|.|.|.|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   60 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAV   60 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEE
Confidence            588999999999999999999999987754332      256777888899999999974

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.37  E-value=4.9e-12  Score=77.86  Aligned_cols=68  Identities=16%  Similarity=0.328  Sum_probs=52.1

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----C---------eEEEEEeccccCCceEEEEe
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----E---------YHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----~---------~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      .|.+...+.......|+.+.|.|.+.|.|.|.++|++++..+...     .         ...|.+.++..+|+|.|.|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            466665565555656899999999999999999999988655321     1         13577778888999999999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus        82 A~   83 (97)
T cd05869          82 AS   83 (97)
T ss_pred             Ee
Confidence            74

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.36  E-value=8.8e-12  Score=72.79  Aligned_cols=64  Identities=23%  Similarity=0.392  Sum_probs=50.6

Q ss_pred             EEeeeccCCCCeEEEEeCCeeeCCCCcEE---------eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         94 LECHAEGHPIPTISWRRENNAILPNGQTI---------FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        94 l~C~~~~~~~~~~~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      +.|.+.|.|.|.++|+++|..+....+..         ...+.|.|.++...|.|.|+|.+.|..|. ....+.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~-~~~~~~   75 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGE-DEKNVS   75 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcc-cceEEE
Confidence            67889999999999999999886544321         11347999999999999999999999887 434443

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.36  E-value=2.4e-11  Score=74.77  Aligned_cols=78  Identities=32%  Similarity=0.597  Sum_probs=59.6

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-----CcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-----GQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .....+.+|+.+.|.|.+.|.|.|.+.|++++..+...     .+....    .+.|.|.++..+|.|.|.|.+.|..|.
T Consensus         8 ~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   87 (96)
T cd05732           8 LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG   87 (96)
T ss_pred             cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC
Confidence            34567788999999999999999999999988554321     122211    247999999999999999999999887


Q ss_pred             ceeeEEEE
Q psy15206        152 GARRKIEV  159 (232)
Q Consensus       152 ~~~~~~~l  159 (232)
                       ....+.|
T Consensus        88 -~~~s~~l   94 (96)
T cd05732          88 -DQQSMYL   94 (96)
T ss_pred             -cEEEEEE
Confidence             4444444

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.36  E-value=6.4e-12  Score=78.00  Aligned_cols=68  Identities=16%  Similarity=0.323  Sum_probs=52.4

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC----CC-e---------EEEEE--eccccCCceEEE
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN----DE-Y---------HSISN--FGTSEGTTGSLQ  227 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~----~~-~---------~~~~~--~~~~~~d~g~Y~  227 (232)
                      +|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+..    .. .         +.+.+  ......|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            47777788888899999999999999999999999999987654    11 1         11111  122578999999


Q ss_pred             EecC
Q psy15206        228 CKVP  231 (232)
Q Consensus       228 C~~~  231 (232)
                      |.|.
T Consensus        81 C~a~   84 (100)
T cd07693          81 CVAH   84 (100)
T ss_pred             EEEE
Confidence            9874

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.36  E-value=5e-12  Score=77.99  Aligned_cols=59  Identities=20%  Similarity=0.339  Sum_probs=49.7

Q ss_pred             eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------------EEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+..|+.+.|.|.+.|+|+|.+.|+|||..+..+..               ..|.+.++..+|+|.|+|.|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~   85 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQ   85 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEE
Confidence            45677899999999999999999999999998764331               257778888899999999874

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.36  E-value=1.2e-11  Score=73.04  Aligned_cols=64  Identities=23%  Similarity=0.394  Sum_probs=50.4

Q ss_pred             EEeeeccCCCCeEEEEeCCeeeCCCCcEEe-----------eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         94 LECHAEGHPIPTISWRRENNAILPNGQTIF-----------TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        94 l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      +.|.+.|.|.|.++|+++|..+........           ..+.|.|.++...|.|.|+|.+.|..|. ....+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~   77 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQ-DSKSIS   77 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCC-eeeEEE
Confidence            678999999999999999998865443211           1346999999999999999999999887 434333

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.36  E-value=1.7e-11  Score=74.60  Aligned_cols=80  Identities=29%  Similarity=0.479  Sum_probs=58.6

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEe-CCeeeCCCCcEE-eeC----CeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRR-ENNAILPNGQTI-FTG----STLQIPRITKEDRGAYYCVAQNGIGRGA  153 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~-~~~----~~l~i~~~~~~~~g~y~C~~~~~~~~~~  153 (232)
                      .+....+..|+.+.|.|.+.|.| +.+.|++ ++..+....+.. ...    +.|.|.++..+|.|.|+|.+.|..|...
T Consensus         6 ~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~   84 (92)
T cd04977           6 VPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTES   84 (92)
T ss_pred             ecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcc
Confidence            34556788899999999999986 4899997 455444322222 222    3799999999999999999999866545


Q ss_pred             eeEEEEE
Q psy15206        154 RRKIEVK  160 (232)
Q Consensus       154 ~~~~~l~  160 (232)
                      .+.+.|.
T Consensus        85 ~~sv~l~   91 (92)
T cd04977          85 EATVNLK   91 (92)
T ss_pred             eeEEEEE
Confidence            5555554

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.35  E-value=4.8e-12  Score=75.87  Aligned_cols=63  Identities=16%  Similarity=0.350  Sum_probs=51.8

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe-----EEEEEeccccCCceEEEEecC
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY-----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~-----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..|.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+....+     -.+.+.++..+|+|.|+|.|.
T Consensus         4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   71 (85)
T cd05728           4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAE   71 (85)
T ss_pred             ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEE
Confidence            356677888999999999999999999999999988765432     245666778899999999874

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.35  E-value=7.9e-12  Score=76.29  Aligned_cols=67  Identities=15%  Similarity=0.305  Sum_probs=48.5

Q ss_pred             cEEEeccceeeee---ccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe--E-----EEEEecc-ccCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQA---LHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY--H-----SISNFGT-SEGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~--~-----~~~~~~~-~~~d~g~Y~C~~~  231 (232)
                      |.+...|.+..+.   .|+.+.|.|.+.|.|.|.+.|+|+|..+.....  +     .+.+.+. ...|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEE
Confidence            4555556655443   478999999999999999999999988764322  2     2334444 3589999999984

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.35  E-value=5.8e-12  Score=76.93  Aligned_cols=64  Identities=11%  Similarity=0.288  Sum_probs=50.6

Q ss_pred             EeccceeeeeccCeEEEEEEeecCCC-CeEEEee-CCEEecC-CCe----------EEEEEeccccCCceEEEEecC
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAYPH-PILYWAK-DGEIVVN-DEY----------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~-~g~~~~~-~~~----------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.|....+..|+.+.|.|.+.|.|. |.+.|++ +|..+.. +.+          ..|.+.++..+|+|.|+|.|+
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~   80 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVS   80 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEE
Confidence            44566667889999999999999995 6999998 7765443 222          457788889999999999985

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.35  E-value=1.1e-11  Score=74.32  Aligned_cols=59  Identities=19%  Similarity=0.302  Sum_probs=49.3

Q ss_pred             eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-C---------eEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-E---------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~---------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.+..|+.+.|.|.+.|.|.|.+.|+|++..+... .         ...|.+.++..+|+|.|.|.|.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   72 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVT   72 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEE
Confidence            356778999999999999999999999999877532 2         2457777888899999999874

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.34  E-value=4.5e-12  Score=77.81  Aligned_cols=59  Identities=20%  Similarity=0.482  Sum_probs=48.7

Q ss_pred             eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-C-------eEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-E-------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~-------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +..+..|+.+.|.|.+.|.|.|.+.|+++|..+... .       ...|.+.+++.+|.|.|+|.|.
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   78 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAE   78 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEE
Confidence            346778999999999999999999999999876543 2       2356777888899999999874

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.34  E-value=1.8e-11  Score=72.08  Aligned_cols=63  Identities=35%  Similarity=0.620  Sum_probs=52.5

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      |+++.|.|.+.|.|.|.+.|++++..+....+....    .+.|.|.++..+|.|.|.|.+.|..|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   67 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGM   67 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCE
Confidence            678999999999999999999998776554443221    257999999999999999999998876

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.34  E-value=1.2e-11  Score=76.26  Aligned_cols=67  Identities=16%  Similarity=0.314  Sum_probs=51.9

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEEecC--------------CCeEEEEEeccccCCceEEE
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEIVVN--------------DEYHSISNFGTSEGTTGSLQ  227 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~~~~--------------~~~~~~~~~~~~~~d~g~Y~  227 (232)
                      +|++.. +.+..+.+|++++|.|.+.|.|.|.+.|+|+  |..+..              .....|.+.+++.+|+|.|.
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            456543 5567888999999999999999999999994  433321              12346778888999999999


Q ss_pred             EecC
Q psy15206        228 CKVP  231 (232)
Q Consensus       228 C~~~  231 (232)
                      |.|+
T Consensus        81 C~A~   84 (98)
T cd05870          81 CEAA   84 (98)
T ss_pred             EEEe
Confidence            9985

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.34  E-value=3.3e-11  Score=72.93  Aligned_cols=81  Identities=20%  Similarity=0.349  Sum_probs=62.1

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC----CcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN----GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK  156 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  156 (232)
                      +....+.+|+.+.|.|.+.+ +.+.+.|++++..+...    .+.......|.|.++..+|.|.|.|.+.+..+......
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~   81 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT   81 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence            34456778999999999876 77789999998776443    23444456799999999999999999998665545666


Q ss_pred             EEEEEE
Q psy15206        157 IEVKVE  162 (232)
Q Consensus       157 ~~l~v~  162 (232)
                      ..+.|.
T Consensus        82 ~~l~V~   87 (89)
T cd04979          82 YSLNVL   87 (89)
T ss_pred             EEEEEe
Confidence            666654

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.33  E-value=4.7e-12  Score=73.32  Aligned_cols=53  Identities=25%  Similarity=0.474  Sum_probs=44.2

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCEEecCCCeE------EEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+.+.|.|.+.|.|.|.|.|+|++..+..+.++      .|.+.++..+|+|.|.|.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~   59 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAE   59 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEE
Confidence            678999999999999999999999876544433      46667788899999999984

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.33  E-value=6.6e-12  Score=74.02  Aligned_cols=61  Identities=16%  Similarity=0.383  Sum_probs=48.6

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecC---CCeEEEEEeccccCCceEEEEecC
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVN---DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~---~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..|.+..+..|+++.|.|.+.|.|.| .|.|+|||..+..   ...-.|.+.+.  .|.|.|.|.|+
T Consensus         3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~   67 (81)
T cd05749           3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAH   67 (81)
T ss_pred             CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEE
Confidence            35667788899999999999999999 7999999998753   22335555554  57899999984

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.33  E-value=1.1e-11  Score=75.23  Aligned_cols=61  Identities=16%  Similarity=0.287  Sum_probs=50.4

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC---------CeEEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND---------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.+..+..|+.+.|.|.+.|.|.|.+.|+++|..+...         ....|.+.++...|.|.|+|.|.
T Consensus         7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~   76 (90)
T cd04972           7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAE   76 (90)
T ss_pred             CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEE
Confidence            44555789999999999999999999999999876432         22467788888999999999874

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.33  E-value=2.8e-11  Score=70.64  Aligned_cols=71  Identities=32%  Similarity=0.644  Sum_probs=54.5

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeC-CeeeCCCCc-EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRE-NNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      |+.+.|.|.+.|.|.|.+.|+++ +..+....+ .....++|.|..+...|.|.|.|.+.|..|. ....+.+.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGE-ATATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCe-EEEEEEEE
Confidence            67899999999999999999974 544433322 2334678999999999999999999998886 44444443

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.33  E-value=1.6e-11  Score=71.07  Aligned_cols=69  Identities=39%  Similarity=0.666  Sum_probs=53.5

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCCCc-EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      +.|.|.+.|.|.|.+.|++++..+..... .....+.|.|.++..+|.|.|+|.+.|..|. ....+.+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGS-ARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCce-EEEEEEEEE
Confidence            46899999999999999999877643222 1223468999999999999999999998886 445555544

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.33  E-value=1.9e-11  Score=71.53  Aligned_cols=69  Identities=32%  Similarity=0.621  Sum_probs=52.5

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCC---CcEE--eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPN---GQTI--FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~---~~~~--~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      +.|.|.+.|.|.|.+.|++++......   .+..  ...+.|.|.++..+|.|.|.|.+.|..|. ....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence            468999999999999999998643211   1222  23468999999999999999999998887 555556554

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.32  E-value=1.9e-11  Score=72.27  Aligned_cols=69  Identities=32%  Similarity=0.625  Sum_probs=52.6

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeC--------CCCcEE-eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAIL--------PNGQTI-FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~--------~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      +.|.|.+.|.|.|.+.|++++....        ...+.. ..+++|.|.++..+|.|.|.|.+.|..|...++.+.|.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            4789999999999999999743211        112222 34578999999999999999999999887666666554

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.32  E-value=9.1e-12  Score=74.81  Aligned_cols=57  Identities=18%  Similarity=0.385  Sum_probs=47.5

Q ss_pred             eeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC----------eEEEEEeccccCCceEEEEecC
Q psy15206        175 GQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE----------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+..|+.+.|.|.+.|.|.|.+.|+|+|..+..+.          ...+.+.++..+|+|.|+|.|.
T Consensus         5 ~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~   71 (85)
T cd05857           5 AVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE   71 (85)
T ss_pred             EcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEE
Confidence            46789999999999999999999999998876432          2356677788899999999874

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.32  E-value=6.6e-12  Score=72.97  Aligned_cols=50  Identities=20%  Similarity=0.493  Sum_probs=41.1

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCC-Ce----------EEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVND-EY----------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~----------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|+|..+..+ .+          ..|.+.++..+|+|.|+|.|.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~   61 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAV   61 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEE
Confidence            479999999999999999999887532 23          256677888899999999874

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.31  E-value=7.5e-12  Score=73.37  Aligned_cols=53  Identities=21%  Similarity=0.460  Sum_probs=44.1

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCEEecCCC--------eEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDE--------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~--------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+++.|.|.+.|.|.|.+.|+|+|..+....        ...|.+.++..+|+|.|.|.|.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   61 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEAR   61 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEE
Confidence            6789999999999999999999998775321        2356777888899999999974

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.31  E-value=3.8e-12  Score=73.05  Aligned_cols=50  Identities=22%  Similarity=0.321  Sum_probs=41.9

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCC-C-----eEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVND-E-----YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-~-----~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|+|..+... .     ...|.+.++..+|+|.|+|.|+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~   56 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLG   56 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEE
Confidence            368999999999999999999887543 2     2367778889999999999986

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.31  E-value=2.1e-11  Score=74.44  Aligned_cols=67  Identities=18%  Similarity=0.291  Sum_probs=48.3

Q ss_pred             cEEEeccceeeeec---cCeEEEEEEeecCCCCeEEEeeCCEEecCC--CeE-----EEEEecc-ccCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQAL---HHDMDLDCHIEAYPHPILYWAKDGEIVVND--EYH-----SISNFGT-SEGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--~~~-----~~~~~~~-~~~d~g~Y~C~~~  231 (232)
                      |.+...|.+..+.+   |+++.|.|.+.|.|.|.|+|+++|..+...  .++     .+.+.+. ...|+|.|+|.|+
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~   79 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAI   79 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEE
Confidence            45555666665544   468999999999999999999999887532  233     2333333 3489999999984

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.31  E-value=2.7e-11  Score=73.42  Aligned_cols=72  Identities=25%  Similarity=0.501  Sum_probs=52.9

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCC----eeeCCCCcE-------------EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         89 GQSVQLECHAEGHPIPTISWRREN----NAILPNGQT-------------IFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~----~~~~~~~~~-------------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      |+.+.|.|.+.|.|.|.++|++++    ..+......             ......|.|.++..+|.|.|.|.+.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            578999999999999999999853    222111100             012247899999999999999999999887


Q ss_pred             ceeeEEEEEE
Q psy15206        152 GARRKIEVKV  161 (232)
Q Consensus       152 ~~~~~~~l~v  161 (232)
                       ....+.|.|
T Consensus        81 -~~~sa~L~V   89 (90)
T cd04974          81 -SHHSAWLTV   89 (90)
T ss_pred             -ccCCEEEEe
Confidence             445556654

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.31  E-value=1.5e-11  Score=74.82  Aligned_cols=61  Identities=18%  Similarity=0.330  Sum_probs=49.9

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe----------EEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY----------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |..+.+.+|+++.|.|.+.|.|.|.+.|+|+|..+..+.+          ..|.+.++..+|+|.|+|.|.
T Consensus         8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   78 (92)
T cd05891           8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVK   78 (92)
T ss_pred             CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEE
Confidence            4456788999999999999999999999999887643322          356777788899999999874

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.30  E-value=1.4e-11  Score=70.51  Aligned_cols=51  Identities=18%  Similarity=0.374  Sum_probs=41.0

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCEEecCCCe-----EEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY-----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~-----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+++.|.|.+.|.|.|.|.|+|+|..+....+     ..|.+.+.  .|+|.|+|.|.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~   56 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAI   56 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEE
Confidence            67899999999999999999999987764332     24566655  57899999984

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.30  E-value=6.3e-12  Score=71.97  Aligned_cols=50  Identities=18%  Similarity=0.464  Sum_probs=42.4

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCCCe----EEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVNDEY----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~~~----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|||..+....+    ..|.+.++..+|+|.|+|.|.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~   54 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLT   54 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEE
Confidence            36899999999999999999998865422    367788889999999999874

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.30  E-value=3.9e-11  Score=71.36  Aligned_cols=67  Identities=19%  Similarity=0.502  Sum_probs=56.2

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC-CcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN-GQTIFTGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      |....+..|+++.|.|.+.+ +.+.+.|+++|..+... .+.....+.|.|.+++..|+|.|+|.+.+.
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence            55677889999999999754 56789999999988654 345566778999999999999999999875

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.29  E-value=5.2e-11  Score=69.78  Aligned_cols=67  Identities=28%  Similarity=0.549  Sum_probs=49.9

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCC--CcEEe--eCCeEEECCCCCC----CCeEEEEEeEeCCCCceeeEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPN--GQTIF--TGSTLQIPRITKE----DRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~--~~~~~--~~~~l~i~~~~~~----~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      +.|.|.+.|.|.|.++|++++..+...  .....  .+++|.|..+..+    |.|.|.|.+.|..|...+..+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV   75 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence            468999999999999999999876322  22222  3578888877643    7899999999998875554443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.29  E-value=1.8e-11  Score=75.37  Aligned_cols=67  Identities=16%  Similarity=0.302  Sum_probs=51.8

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC--------------CeEEEEEeccccCCceEEEEe
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND--------------EYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--------------~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      +|.+. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+...              ....|.+.++...|+|.|.|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            35554 344567889999999999999999999999987544321              224677888889999999999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus        81 a~   82 (96)
T cd05732          81 AS   82 (96)
T ss_pred             EE
Confidence            74

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.29  E-value=1.4e-11  Score=72.54  Aligned_cols=53  Identities=19%  Similarity=0.459  Sum_probs=44.2

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+++.|.|.+.|.|.|.+.|++++..+....         ...|.+.++..+|+|.|.|.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   62 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAI   62 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEE
Confidence            6789999999999999999999987665433         3467777888899999999974

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.28  E-value=7.7e-12  Score=72.16  Aligned_cols=50  Identities=24%  Similarity=0.527  Sum_probs=42.5

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCC-----CeEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVND-----EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-----~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|||..+..+     ....|.+.++..+|+|.|+|.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~   55 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLT   55 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEE
Confidence            468999999999999999999887643     23467788889999999999974

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.28  E-value=5.3e-11  Score=72.18  Aligned_cols=72  Identities=28%  Similarity=0.546  Sum_probs=52.8

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeC----CeeeCCCCc--E-Ee----------eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRE----NNAILPNGQ--T-IF----------TGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~----~~~~~~~~~--~-~~----------~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      |+.+.|.|.+.|.|.|.+.|++.    +..+.....  . ..          ..+.|.|.+++.+|.|.|+|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    333322111  0 00          0147999999999999999999999887


Q ss_pred             ceeeEEEEEE
Q psy15206        152 GARRKIEVKV  161 (232)
Q Consensus       152 ~~~~~~~l~v  161 (232)
                       ....+.|.|
T Consensus        81 -~~~~a~L~V   89 (90)
T cd05858          81 -SHHSAWLTV   89 (90)
T ss_pred             -ccceEEEEE
Confidence             445555554

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.28  E-value=9.5e-11  Score=71.23  Aligned_cols=65  Identities=32%  Similarity=0.567  Sum_probs=52.3

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCC--CCcEEeeCCeEEECCCCC-CCCeEEEEEeEeCCCCce
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILP--NGQTIFTGSTLQIPRITK-EDRGAYYCVAQNGIGRGA  153 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~--~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~~~~~~~~  153 (232)
                      +..+.|.|.+.|.|.+.++|++++..+..  ........+.|.|.++.. .|.|.|+|.+.|..|...
T Consensus        19 ~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          19 EGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            45799999999999999999999987732  233445567899988764 899999999999888633

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.28  E-value=3.4e-11  Score=73.24  Aligned_cols=67  Identities=18%  Similarity=0.303  Sum_probs=47.9

Q ss_pred             cEEEeccceeeeec---cCeEEEEEEeecCCCCeEEEeeCCEEecC-CCeE-----EEEEeccc-cCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQAL---HHDMDLDCHIEAYPHPILYWAKDGEIVVN-DEYH-----SISNFGTS-EGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-~~~~-----~~~~~~~~-~~d~g~Y~C~~~  231 (232)
                      |.+...|.+..+.+   |..+.|.|.+.|.|.|.++|+|++..+.. ..++     .|.+.+.. .+|+|.|+|.|+
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~   78 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVS   78 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEE
Confidence            45555555544333   45799999999999999999999987753 2232     34454543 589999999984

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.28  E-value=4e-11  Score=70.40  Aligned_cols=66  Identities=30%  Similarity=0.621  Sum_probs=50.0

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCCC--cEE--eeCCeEEECCCCC----CCCeEEEEEeEeCCCCceeeEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPNG--QTI--FTGSTLQIPRITK----EDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~--~~~~~l~i~~~~~----~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      +.|.|.+.|.|.|.++|++++..+....  +..  ...+.|.|..+..    +|.|.|.|.+.|..|...+..+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEI   74 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcccc
Confidence            4689999999999999999998764322  222  2357888888754    6899999999999887544433

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.27  E-value=2e-11  Score=72.08  Aligned_cols=59  Identities=14%  Similarity=0.257  Sum_probs=47.7

Q ss_pred             ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEE-----EEEeccccCCceEEEEecC
Q psy15206        172 TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHS-----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~-----~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ....+..|+.+.|.|.+.+. .+.+.|+|||..+....++.     |.+.++..+|+|.|.|.+.
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~   65 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTS   65 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEe
Confidence            34567789999999999886 56899999998877654443     5667778899999999973

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.27  E-value=2.1e-11  Score=70.42  Aligned_cols=51  Identities=25%  Similarity=0.698  Sum_probs=40.4

Q ss_pred             eEEEEEEeecCCCCeEEEeeCCEEecCCCeEE------EEEeccccCCceEEEEecC
Q psy15206        181 DMDLDCHIEAYPHPILYWAKDGEIVVNDEYHS------ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       181 ~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~------~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++.|.|.+.|.|.|.+.|+|+|..+....++.      +.+.++..+|+|.|+|.|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~   57 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAE   57 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEE
Confidence            47899999999999999999998776544332      3334677799999999974

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.27  E-value=3.7e-11  Score=72.70  Aligned_cols=63  Identities=13%  Similarity=0.383  Sum_probs=49.7

Q ss_pred             EeccceeeeeccCeEEEEEEeecCCCCeEEEee-CCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK-DGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.+.+..+..|+++.|.|.+.|.|. .+.|++ +|..+....         ...|.+.++..+|+|.|+|.|+
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~   76 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT   76 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEE
Confidence            44566677889999999999999997 999998 465554332         2367777888899999999985

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.27  E-value=8.9e-11  Score=68.83  Aligned_cols=70  Identities=39%  Similarity=0.703  Sum_probs=54.4

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPNG--QTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      +.|.|.+.|.|.|.+.|++++..+....  +...  ....|.|.++...|.|.|+|.+.|..|. ....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV-DEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence            3689999999999999999998765432  2222  2347999999999999999999998887 4456666654

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.27  E-value=2e-10  Score=70.80  Aligned_cols=71  Identities=28%  Similarity=0.461  Sum_probs=56.1

Q ss_pred             CCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCC--CcEEee--------CCeEEECCCCCCC-CeEEEEEeEeC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPN--GQTIFT--------GSTLQIPRITKED-RGAYYCVAQNG  148 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~--~~~~~~--------~~~l~i~~~~~~~-~g~y~C~~~~~  148 (232)
                      +....+.+|+.+.|.|.+.|.|.| .+.|++++..+...  .++...        .+.|.|.++..+| .|.|.|.+.|.
T Consensus         8 ~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~   87 (98)
T cd05758           8 EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS   87 (98)
T ss_pred             CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence            445667889999999999999998 59999999876432  233221        1379999999954 89999999999


Q ss_pred             CCC
Q psy15206        149 IGR  151 (232)
Q Consensus       149 ~~~  151 (232)
                      .|.
T Consensus        88 ~G~   90 (98)
T cd05758          88 FGS   90 (98)
T ss_pred             CCc
Confidence            887

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.27  E-value=1.5e-11  Score=72.00  Aligned_cols=53  Identities=21%  Similarity=0.371  Sum_probs=42.8

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCEEecCC--C------eEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGEIVVND--E------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--~------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+.+.|.|.+.|.|.|+|.|+|+|..+...  .      .-.+.+.++...|+|.|+|.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~   61 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNAS   61 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEE
Confidence            678999999999999999999999877421  1      1245566778899999999874

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.27  E-value=2.2e-11  Score=73.73  Aligned_cols=60  Identities=17%  Similarity=0.425  Sum_probs=49.2

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC------CeEEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.++.+.+|++++|.|.+.|. .|.+.|+|+|..+...      ....|.+.++..+|+|.|.|.|.
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   75 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEAS   75 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEE
Confidence            345678899999999999999 9999999999876432      22357777888899999999984

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.27  E-value=1.1e-10  Score=70.59  Aligned_cols=68  Identities=19%  Similarity=0.403  Sum_probs=55.4

Q ss_pred             eEeecCCcEEEEeeeccC-----CCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGH-----PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ..+..|+...|.|...+.     +.+.+.|++++..+.........++.|.|.++..+|+|.|+|.+.+..+.
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~   77 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNG   77 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence            456689999999987542     46789999999987655544446789999999999999999999987665

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.26  E-value=6.4e-11  Score=69.37  Aligned_cols=62  Identities=23%  Similarity=0.487  Sum_probs=51.4

Q ss_pred             CCCceEeecCCcEEEEeeeccCCC-CeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPI-PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      .|....+.+|+.+.|.|.+.+.|. ..+.|++++..+..      ..+.|.|.++ .+|+|.|+|.+.+.
T Consensus         6 ~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           6 DPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC
Confidence            566677889999999999988775 46999999987622      3467899999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.26  E-value=1.6e-11  Score=71.47  Aligned_cols=50  Identities=20%  Similarity=0.559  Sum_probs=40.9

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCC-Ce----------EEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVND-EY----------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~----------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|++..+..+ .+          ..|.+.++..+|+|.|+|.|.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   61 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAK   61 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEE
Confidence            479999999999999999998877532 22          246677888899999999974

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.25  E-value=8.6e-11  Score=68.85  Aligned_cols=66  Identities=30%  Similarity=0.623  Sum_probs=49.0

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeC--CCCcEEe--eCCeEEECCCC----CCCCeEEEEEeEeCCCCceeeEE
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAIL--PNGQTIF--TGSTLQIPRIT----KEDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~--~~~~~~~--~~~~l~i~~~~----~~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      +.|.|.+.|.|.|.++|++++..+.  ...+...  .++.|.|..+.    .+|.|.|.|.+.|..|...+..+
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKI   74 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEE
Confidence            3689999999999999999998652  2223322  35688888764    24689999999999887554443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.25  E-value=3.6e-11  Score=69.89  Aligned_cols=53  Identities=23%  Similarity=0.513  Sum_probs=44.2

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCEEecCCCe------EEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+++.|.|.+.|.|.|.+.|+|++..+....+      -.|.+.++...|+|.|+|.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   59 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAE   59 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEE
Confidence            67899999999999999999999988754432      246677888899999999874

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.24  E-value=4.9e-11  Score=74.85  Aligned_cols=70  Identities=19%  Similarity=0.237  Sum_probs=49.8

Q ss_pred             EeccEEEeccceeee----eccCeEEEEEEeecCCCCeEEEeeCCEEecCC-CeE-------------EEEEeccc-cCC
Q psy15206        162 EFAPIVTVQSTRIGQ----ALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-EYH-------------SISNFGTS-EGT  222 (232)
Q Consensus       162 ~~~p~~~~~~~~~~~----~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~~-------------~~~~~~~~-~~d  222 (232)
                      .++|.+...+....+    ..|..+.|.|.+.|.|.+.+.|+|||..+... .++             .|.+.++. .+|
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            356666555442222    24678999999999999999999999877532 222             35555665 489


Q ss_pred             ceEEEEecC
Q psy15206        223 TGSLQCKVP  231 (232)
Q Consensus       223 ~g~Y~C~~~  231 (232)
                      .|.|+|.|.
T Consensus        82 ~G~Y~C~A~   90 (109)
T cd05773          82 YALFTCTAH   90 (109)
T ss_pred             CEEEEEEEE
Confidence            999999874

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.24  E-value=1e-10  Score=69.54  Aligned_cols=71  Identities=27%  Similarity=0.570  Sum_probs=52.7

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCe--e-e--CCCC---cE-EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENN--A-I--LPNG---QT-IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~--~-~--~~~~---~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      |+.+.|.|.+.|.|.|.+.|++++.  . .  ....   .. ....+.|.|.++..+|.|.|.|.+.|..|. ....+.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l   79 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGL-LRANFPL   79 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCce-EEEEEEE
Confidence            6789999999999999999999742  1 1  1110   11 123467999999999999999999999887 5455554


Q ss_pred             E
Q psy15206        160 K  160 (232)
Q Consensus       160 ~  160 (232)
                      .
T Consensus        80 ~   80 (81)
T cd05765          80 S   80 (81)
T ss_pred             e
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.24  E-value=8.2e-11  Score=71.53  Aligned_cols=64  Identities=16%  Similarity=0.335  Sum_probs=50.0

Q ss_pred             EEeccceeeeeccCeEEEEEEeecCCCCeEEEee-CCEEecC----------CCeEEEEEeccccCCceEEEEecC
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK-DGEIVVN----------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~g~~~~~----------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.+.|....+..|+++.|.|.+.|.|. .+.|++ +|..+..          .....|.+.+++.+|+|.|+|.|+
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   77 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVAT   77 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEE
Confidence            345566678889999999999999974 999997 5554432          123468888899999999999985

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.24  E-value=6.5e-11  Score=69.28  Aligned_cols=60  Identities=27%  Similarity=0.530  Sum_probs=48.6

Q ss_pred             EEEEeeecc-CCCCeEEEEeCCeeeCCCCcEE---e----eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         92 VQLECHAEG-HPIPTISWRRENNAILPNGQTI---F----TGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~---~----~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      +.|.|.+.| .|.+.+.|++++..+.......   .    ..+.|.|.++..+|.|.|.|.+.|..|.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   68 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGN   68 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCc
Confidence            368999999 8999999999998775433211   1    2357999999999999999999998886

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.24  E-value=1.1e-10  Score=69.83  Aligned_cols=71  Identities=24%  Similarity=0.381  Sum_probs=52.2

Q ss_pred             CCcEEEEeeeccC--CCCeEEEEeCCeeeCCCCc---------EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206         89 GQSVQLECHAEGH--PIPTISWRRENNAILPNGQ---------TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        89 g~~~~l~C~~~~~--~~~~~~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      |+.+.|.|.+.+.  |.+.+.|++++........         .....+.|.|.+++.+|+|.|.|.+.|..+. .....
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~-~~~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMD-QKEST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCc-eEEEE
Confidence            6789999999998  7788999987765421110         1112357999999999999999999998776 43444


Q ss_pred             EEE
Q psy15206        158 EVK  160 (232)
Q Consensus       158 ~l~  160 (232)
                      .+.
T Consensus        80 ~v~   82 (84)
T cd05742          80 KVN   82 (84)
T ss_pred             EEE
Confidence            443

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.23  E-value=5.2e-11  Score=73.01  Aligned_cols=63  Identities=22%  Similarity=0.329  Sum_probs=47.5

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe--E------EEEEecc-----ccCCceEEEEecC
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY--H------SISNFGT-----SEGTTGSLQCKVP  231 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~--~------~~~~~~~-----~~~d~g~Y~C~~~  231 (232)
                      ..|.+..+..|+++.|.|.+.|.|.|.+.|+|||..+.....  +      .+.+.+.     ...|.|.|+|.|.
T Consensus         4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~   79 (95)
T cd05722           4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQ   79 (95)
T ss_pred             ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEE
Confidence            456666778899999999999999999999999988763321  1      1222222     4689999999874

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.23  E-value=5.6e-11  Score=71.58  Aligned_cols=53  Identities=15%  Similarity=0.360  Sum_probs=42.6

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCEEecCC-CeE-------------EEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGEIVVND-EYH-------------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~~-------------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+.+.|.|.+.|.|++.+.|+|++..+..+ .++             .|.+.++...|+|.|+|.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~   67 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAI   67 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEE
Confidence            788999999999999999999999776432 222             35556667799999999984

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.23  E-value=3.3e-11  Score=70.74  Aligned_cols=53  Identities=21%  Similarity=0.365  Sum_probs=44.0

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCEEecCCC--------eEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDE--------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~--------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+.+.|.|.+.|.|.|.+.|+++|..+....        ...|.+.++..+|+|.|+|.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~   61 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNAS   61 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEE
Confidence            6789999999999999999999998765322        2456677788899999999874

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.22  E-value=5.9e-11  Score=71.44  Aligned_cols=61  Identities=21%  Similarity=0.385  Sum_probs=49.5

Q ss_pred             cceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCC-Ce------EEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVND-EY------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~-~~------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.+..+..|+++.|.|.+ .|.|.|.+.|+|+|..+... .+      ..|.+.++...|+|.|+|.+.
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   71 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVAT   71 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEE
Confidence            456677899999999998 79999999999999876542 21      256777888899999999874

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.22  E-value=4e-11  Score=70.41  Aligned_cols=50  Identities=22%  Similarity=0.533  Sum_probs=40.9

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCCC--------eEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVNDE--------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~~--------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++|.|.+.|.|.|.+.|+|+|..+....        ...|.+.++..+|+|.|.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   58 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAH   58 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEE
Confidence            4799999999999999999998875432        1256677788899999999874

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.22  E-value=5.1e-11  Score=69.48  Aligned_cols=50  Identities=18%  Similarity=0.482  Sum_probs=41.2

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCC-C----------eEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVND-E----------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-~----------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|+|..+..+ .          ...|.+.++...|+|.|+|.|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   61 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAV   61 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence            479999999999999999999877532 2          2357777888899999999874

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.22  E-value=2.4e-11  Score=69.73  Aligned_cols=50  Identities=20%  Similarity=0.461  Sum_probs=41.3

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCCCeE------EEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVNDEYH------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|+|..+....++      .|.+.++...|+|.|+|.|.
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   56 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVAR   56 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEE
Confidence            479999999999999999999877644332      46677888899999999974

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.22  E-value=4.6e-11  Score=69.76  Aligned_cols=48  Identities=19%  Similarity=0.379  Sum_probs=39.5

Q ss_pred             EEEEeecCCCCeEEEeeCCEEecCCCe--------------EEEEEeccccCCceEEEEecC
Q psy15206        184 LDCHIEAYPHPILYWAKDGEIVVNDEY--------------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       184 l~C~~~~~p~~~~~W~~~g~~~~~~~~--------------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.+.|.|.|.++|+|||..+..+.+              ..|.+..++..|+|.|+|.|.
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~   64 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAK   64 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEE
Confidence            678999999999999999998864432              246667778899999999984

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.21  E-value=9.1e-11  Score=69.77  Aligned_cols=73  Identities=26%  Similarity=0.440  Sum_probs=56.1

Q ss_pred             eEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         84 SVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      ..+.+|+++.|.|.+.+ .+.+.+.|++++..+..    ......|.|.+++.+|+|.|+|.+.+..+...+..+.+.
T Consensus         9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~----~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~   82 (83)
T cd05753           9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY----SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT   82 (83)
T ss_pred             ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc----cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence            46778999999999854 55667999999976532    123457999999999999999999998776555554443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.21  E-value=3.2e-10  Score=68.01  Aligned_cols=70  Identities=23%  Similarity=0.479  Sum_probs=56.3

Q ss_pred             CCCceEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .+....+.+|+.+.|.|.+.+ .+.+.+.|++++..+..  +....++.|.|.+++.+|+|.|.|.+.|..|.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~--~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~   77 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS--RAMDFNGILTIRNVQLSDAGTYVCTGSNMLDT   77 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC--cccccCCEEEECCCCHHHCEEEEEEEeccCCe
Confidence            455667788999999999875 67788999998866432  22334578999999999999999999998776

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.19  E-value=4.7e-10  Score=66.92  Aligned_cols=73  Identities=27%  Similarity=0.512  Sum_probs=52.9

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCCCC----cE----EeeCCeEEECCCCCCCCeEEEEEeEeCCC-CceeeEEEE
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILPNG----QT----IFTGSTLQIPRITKEDRGAYYCVAQNGIG-RGARRKIEV  159 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~----~~----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-~~~~~~~~l  159 (232)
                      |+++.|.|.+.+.|.+.+.|+++++......    ..    ....+.|.|.+++.+|+|.|.|.+.+..+ ....+.+.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            6889999999998889999998775432111    00    11245799999999999999999998654 234555555


Q ss_pred             EE
Q psy15206        160 KV  161 (232)
Q Consensus       160 ~v  161 (232)
                      .|
T Consensus        81 ~V   82 (84)
T cd05861          81 TV   82 (84)
T ss_pred             EE
Confidence            55

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.19  E-value=6.4e-11  Score=70.62  Aligned_cols=57  Identities=19%  Similarity=0.419  Sum_probs=47.5

Q ss_pred             eeeccCeEEEEEEeecCCCCeEEEeeCCEEecC-------CCeEEEEEeccccCCceEEEEecC
Q psy15206        175 GQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN-------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ....|+++.|.|.+.|.|.|.+.|+|+|..+..       .....|.+.++..+|+|.|+|.+.
T Consensus         5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   68 (82)
T cd05856           5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS   68 (82)
T ss_pred             eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEE
Confidence            456799999999999999999999999876532       233678888889999999999874

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.18  E-value=1.2e-10  Score=67.88  Aligned_cols=51  Identities=20%  Similarity=0.363  Sum_probs=42.1

Q ss_pred             eEEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206        181 DMDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       181 ~~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.|.|.+.|.|.|.+.|+|+|..+..+.         ...|.+.++...|+|.|+|.|.
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   60 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLK   60 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEE
Confidence            36899999999999999999998874333         3456677888899999999874

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.18  E-value=1.3e-10  Score=69.14  Aligned_cols=60  Identities=20%  Similarity=0.383  Sum_probs=47.7

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-CeE-----EEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-EYH-----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~~-----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.+..+..|+++.|.|.+.+ +.+.+.|++||..+..+ .++     .|.+.+++..|+|.|+|.+.
T Consensus         3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~   68 (87)
T cd05873           3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSV   68 (87)
T ss_pred             cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEE
Confidence            55677889999999999854 67899999999987654 222     35556788899999999874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.17  E-value=1.2e-10  Score=68.78  Aligned_cols=49  Identities=14%  Similarity=0.360  Sum_probs=40.1

Q ss_pred             EEEEEeecCCCCeEEEeeCCEEecCCCe----------------EEEEEeccccCCceEEEEecC
Q psy15206        183 DLDCHIEAYPHPILYWAKDGEIVVNDEY----------------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       183 ~l~C~~~~~p~~~~~W~~~g~~~~~~~~----------------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.|.+.|.|.|.++|+|||..+..+..                ..|.+.++...|+|.|+|.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~   66 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVAS   66 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEE
Confidence            3689999999999999999988765432                246677788899999999874

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.17  E-value=9.8e-10  Score=65.90  Aligned_cols=75  Identities=27%  Similarity=0.525  Sum_probs=56.9

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-----eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+........     ....|.|.++..+|.|.|.|.+.+..|. ....+.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~-~~~~~~   82 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS-INHTYK   82 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCce-EEEEEE
Confidence            3455799999999999988889999999887653322211     1236889999999999999999998776 444444


Q ss_pred             E
Q psy15206        159 V  159 (232)
Q Consensus       159 l  159 (232)
                      +
T Consensus        83 l   83 (85)
T cd05729          83 V   83 (85)
T ss_pred             E
Confidence            4

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.16  E-value=3e-10  Score=69.14  Aligned_cols=60  Identities=15%  Similarity=0.243  Sum_probs=48.3

Q ss_pred             ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEe--------c----------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        172 TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIV--------V----------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~--------~----------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+..+..|+++.|.|.+.+.|.+.+.|++++..+        .          ....+.|.+.++..+|+|.|+|.+.
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~   82 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF   82 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence            4567889999999999999999999998876421        0          1124688889999999999999874

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.16  E-value=1.2e-10  Score=67.75  Aligned_cols=50  Identities=20%  Similarity=0.347  Sum_probs=39.8

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEec--CCCe------EEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVV--NDEY------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~--~~~~------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++|.|.+.|.|.|.+.|+|++..+.  ...+      -.|.+.++...|+|.|.|.|.
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~   58 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVAT   58 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEE
Confidence            4799999999999999999988765  2222      245666777899999999874

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.16  E-value=4.2e-10  Score=68.36  Aligned_cols=67  Identities=18%  Similarity=0.336  Sum_probs=47.3

Q ss_pred             cEEEeccceeeee---ccCeEEEEEEeecCCCCeEEEeeCCEEecCC--CeE-----EEEEeccc-cCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQA---LHHDMDLDCHIEAYPHPILYWAKDGEIVVND--EYH-----SISNFGTS-EGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--~~~-----~~~~~~~~-~~d~g~Y~C~~~  231 (232)
                      |.+...|.+..+.   .|+.+.|.|.+.|.|.|.++|+|+|..+...  ..+     .|.+.+.. ..|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEE
Confidence            4455555554433   3467999999999999999999999887421  222     34444454 489999999985

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.16  E-value=3.3e-10  Score=69.82  Aligned_cols=67  Identities=19%  Similarity=0.304  Sum_probs=50.1

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecCC--CeE-------------EEEEeccccCC-ceEE
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVND--EYH-------------SISNFGTSEGT-TGSL  226 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~~--~~~-------------~~~~~~~~~~d-~g~Y  226 (232)
                      ||.+. .+....+..|+.+.|.|.+.|.|.| .|.|++++..+...  .++             .|.+.++..+| .|.|
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            45553 3455667899999999999999999 59999999876532  233             45566677644 8999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      .|.|.
T Consensus        81 ~C~A~   85 (98)
T cd05758          81 NCTAW   85 (98)
T ss_pred             EEEEE
Confidence            99874

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.15  E-value=6.2e-11  Score=68.44  Aligned_cols=50  Identities=18%  Similarity=0.391  Sum_probs=40.4

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCC------CeEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVND------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|++..+..+      ....|.+.++...|+|.|.|.|.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   56 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAE   56 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEE
Confidence            479999999999999999998765432      22366677888899999999974

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.14  E-value=1.4e-09  Score=66.25  Aligned_cols=68  Identities=21%  Similarity=0.396  Sum_probs=52.6

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeC--------CCCcEEe-----eCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL--------PNGQTIF-----TGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~--------~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      ..+..+.+|+++.|.|.+.+.+.+.+.|++++..+.        ...++..     ....|.|.++..+|.|.|+|.+..
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            345778899999999999999999999998775321        1222221     134899999999999999999987


Q ss_pred             C
Q psy15206        148 G  148 (232)
Q Consensus       148 ~  148 (232)
                      .
T Consensus        84 ~   84 (95)
T cd05882          84 M   84 (95)
T ss_pred             e
Confidence            3

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.14  E-value=6.4e-10  Score=62.43  Aligned_cols=62  Identities=44%  Similarity=0.816  Sum_probs=50.1

Q ss_pred             cCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +|+.+.|.|.+.+.+.+.+.|++++..+............|.|.++...|.|.|.|.+.+..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            47889999998888888999999988766322233445689999999999999999998754

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.14  E-value=1.8e-10  Score=69.83  Aligned_cols=53  Identities=17%  Similarity=0.324  Sum_probs=41.5

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeC----CEEecCC------------------CeEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKD----GEIVVND------------------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~----g~~~~~~------------------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+++.|.|.+.|.|.|.|.|+|+    |..+..+                  ....|.+.+++.+|+|.|+|.|+
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   75 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAG   75 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEE
Confidence            67899999999999999999984    3322211                  11368888899999999999974

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.14  E-value=2.3e-10  Score=69.33  Aligned_cols=53  Identities=17%  Similarity=0.296  Sum_probs=41.0

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCC----EEecC------------------CCeEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDG----EIVVN------------------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g----~~~~~------------------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+.+.|.|.+.|.|.|.|+|+|++    ..+..                  .....+.+.+++.+|+|.|+|.|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   75 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAG   75 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEee
Confidence            678999999999999999999963    22110                  112367778888999999999984

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.13  E-value=2.5e-10  Score=67.89  Aligned_cols=59  Identities=17%  Similarity=0.124  Sum_probs=47.4

Q ss_pred             eeeeeccCeEEEEEEeec-CCCCeEEEeeCCEEecC-CCeEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEA-YPHPILYWAKDGEIVVN-DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~~-~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+.+|+.++|.|.+.+ .+.+.+.|+|+|..+.. .....+.+..++.+|+|.|.|.+.
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~   68 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGI   68 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEE
Confidence            346789999999999854 55668999999987753 234577888889999999999975

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.12  E-value=1.2e-10  Score=66.96  Aligned_cols=50  Identities=20%  Similarity=0.531  Sum_probs=40.5

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCC-----CeEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVND-----EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~-----~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|++..+...     ....|.+.++..+|+|.|+|.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   55 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAE   55 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEE
Confidence            479999999999999999997655432     23367777888899999999974

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.11  E-value=1.6e-10  Score=67.56  Aligned_cols=50  Identities=22%  Similarity=0.448  Sum_probs=40.6

Q ss_pred             EEEEEEeec-CCCCeEEEeeCCEEecCCC------------eEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEA-YPHPILYWAKDGEIVVNDE------------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~-~p~~~~~W~~~g~~~~~~~------------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.| .|.|.+.|+|+|..+....            ...|.+..+...|+|.|.|.|.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   63 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVE   63 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEE
Confidence            369999999 9999999999998765322            2356777888899999999974

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.11  E-value=4.5e-10  Score=65.45  Aligned_cols=53  Identities=25%  Similarity=0.524  Sum_probs=41.6

Q ss_pred             cCeEEEEEEeecCCCCeEEEee-CCEEecCCCe------EEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAK-DGEIVVNDEY------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~-~g~~~~~~~~------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....+      -.+.+..+...|.|.|.|.|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   60 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIAS   60 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEE
Confidence            6789999999999999999997 5665543322      245666778899999999974

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.11  E-value=1.8e-09  Score=65.98  Aligned_cols=68  Identities=18%  Similarity=0.379  Sum_probs=51.7

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCee--------eCCCCcEEe-----eCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA--------ILPNGQTIF-----TGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~--------~~~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      +....+.+|+++.|.|.+.+.|.+.+.|++.+..        .....++..     ...+|.|.+++.+|+|.|.|.+..
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            4557888999999999999999899999864321        122233322     224799999999999999999987


Q ss_pred             C
Q psy15206        148 G  148 (232)
Q Consensus       148 ~  148 (232)
                      .
T Consensus        84 ~   84 (95)
T cd07701          84 M   84 (95)
T ss_pred             e
Confidence            4

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.11  E-value=5.6e-10  Score=65.42  Aligned_cols=60  Identities=23%  Similarity=0.500  Sum_probs=46.1

Q ss_pred             EEEEeeecc-CCCCeEEEEeCCeeeCCCC----cEEe----eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         92 VQLECHAEG-HPIPTISWRRENNAILPNG----QTIF----TGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~----~~~~----~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      +.|.|.+.+ .|.+.+.|++++..+....    +...    ..+.|.|.++...|+|.|.|.+.|..|.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~   69 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGN   69 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence            368999875 5778899999988774321    1111    2357999999999999999999998876

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.11  E-value=4.6e-10  Score=67.08  Aligned_cols=52  Identities=17%  Similarity=0.365  Sum_probs=41.3

Q ss_pred             CeEEEEEEeecCCCC--eEEEeeCCEEecCC---C----------eEEEEEeccccCCceEEEEecC
Q psy15206        180 HDMDLDCHIEAYPHP--ILYWAKDGEIVVND---E----------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       180 ~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~---~----------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.+.|.|.+.|.|.|  .+.|++||..+...   .          ...|.+.+++..|+|.|+|.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~   67 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQ   67 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEe
Confidence            468999999999987  58999999876431   1          2356777888899999999974

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.10  E-value=2e-10  Score=66.40  Aligned_cols=50  Identities=26%  Similarity=0.466  Sum_probs=40.8

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCC------CeEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVND------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|++..+...      ....|.+.++..+|+|.|+|.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   56 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTAS   56 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEE
Confidence            478999999999999999998765432      22367788888999999999874

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.09  E-value=2.5e-10  Score=66.75  Aligned_cols=50  Identities=24%  Similarity=0.424  Sum_probs=38.5

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEec---C-------CCeEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVV---N-------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~---~-------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|+|....   .       .....+.+.++..+|+|.|.|.|.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~   60 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQ   60 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEE
Confidence            4789999999999999999975321   1       112356777888899999999974

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.07  E-value=4.7e-10  Score=68.02  Aligned_cols=53  Identities=15%  Similarity=0.451  Sum_probs=42.1

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCEEe--------cCCCe------EEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGEIV--------VNDEY------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~~~--------~~~~~------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+.+.|.|.+.|.|.|.+.|+|+|..+        ....+      ..|.+.++..+|+|.|.|.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~   67 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTL   67 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEE
Confidence            678999999999999999999988542        11222      246777888899999999974

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.07  E-value=4.7e-09  Score=63.49  Aligned_cols=77  Identities=22%  Similarity=0.371  Sum_probs=54.3

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee----CCCCcEEeeCCeEEECCCCCCCCeEEEEEeEe-CCCCceeeE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENN--AI----LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN-GIGRGARRK  156 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~----~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~  156 (232)
                      ....+|+++.|.|.. +.|.+.+.|++...  ..    ....+.....+.|.|.++..+|+|.|.|.+.+ ..+. ....
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~-~~~~   83 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQ-TLAK   83 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeE-EEEE
Confidence            456689999999996 47888999998432  11    12234445567899999999999999999985 4333 3345


Q ss_pred             EEEEEE
Q psy15206        157 IEVKVE  162 (232)
Q Consensus       157 ~~l~v~  162 (232)
                      +.|.|.
T Consensus        84 ~~l~v~   89 (91)
T cd05871          84 YTLHVI   89 (91)
T ss_pred             EEEEEe
Confidence            555543

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.07  E-value=3.8e-10  Score=68.68  Aligned_cols=59  Identities=14%  Similarity=0.102  Sum_probs=46.1

Q ss_pred             eeeeeccCeEEEEEEeec-----CCCCeEEEeeCCEEecC----CC-----eEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEA-----YPHPILYWAKDGEIVVN----DE-----YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~g~~~~~----~~-----~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+.+|+.+.|.|.+.+     .|.+.+.|+|+|..+..    ..     ...|.+..+..+|+|.|+|.++
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~   80 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVR   80 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEc
Confidence            345678999999999998     68889999999865321    11     2356777888899999999875

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.07  E-value=5.9e-10  Score=66.81  Aligned_cols=52  Identities=17%  Similarity=0.343  Sum_probs=41.3

Q ss_pred             CeEEEEEEeecCCCC--eEEEeeCCEEecCC-------------CeEEEEEeccccCCceEEEEecC
Q psy15206        180 HDMDLDCHIEAYPHP--ILYWAKDGEIVVND-------------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       180 ~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~-------------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +++.|.|.+.|.|.+  .+.|+++|..+..+             ..-.|.+.++...|+|.|+|.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   67 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQ   67 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEe
Confidence            468999999999987  57999999876522             12247777888899999999974

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.06  E-value=5.3e-10  Score=65.48  Aligned_cols=50  Identities=20%  Similarity=0.425  Sum_probs=35.0

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecC-----------CCeEEEEEeccc--cCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVN-----------DEYHSISNFGTS--EGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~-----------~~~~~~~~~~~~--~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|+++|+|+|..+..           ++.+.|......  ..|.|.|+|.|.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~   63 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTAR   63 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEE
Confidence            47999999999999999999987531           122223222221  247899999984

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.06  E-value=4.8e-10  Score=65.76  Aligned_cols=50  Identities=18%  Similarity=0.434  Sum_probs=36.3

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCC--C-------eEEEEEeccc----cCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVND--E-------YHSISNFGTS----EGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~--~-------~~~~~~~~~~----~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.|+|+|||..+...  .       ...|.+....    ..|+|.|+|.|.
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~   63 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYAS   63 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEE
Confidence            478999999999999999999876422  1       1233344332    368999999974

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>KOG3515|consensus

Probab=99.05  E-value=2.9e-09  Score=85.58  Aligned_cols=196  Identities=22%  Similarity=0.286  Sum_probs=119.7

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecC-CCCCeEEEEeCcEee-eeEEEEe-------------------------
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFKRL-GRLHLAI-------------------------   61 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~-~p~~~~~W~~~~~~~-~~~~~~~-------------------------   61 (232)
                      +...|.+... ..+.-+..|+.|.|.|.+.+ +|...+.|++..... +++....                         
T Consensus         4 ~p~~pv~~~~-~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~   82 (741)
T KOG3515|consen    4 PPNVPVCESS-SLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSV   82 (741)
T ss_pred             CCCCccccCC-CCChhhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccc
Confidence            3445666555 44448999999999999997 456789999954433 2222222                         


Q ss_pred             ---eeecCceeecCCcEEecCCCCceEeecCCcEEEEeeecc--CCCCeEEEEeCCeeeCCCC------------cEEee
Q psy15206         62 ---PYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISWRRENNAILPNG------------QTIFT  124 (232)
Q Consensus        62 ---~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~~~~~------------~~~~~  124 (232)
                         .+..+.+.+..++.-.. .........+..+.+.|....  .|.+.+.|..+........            .....
T Consensus        83 ~~~~~~~~~l~v~~~pa~~~-~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~  161 (741)
T KOG3515|consen   83 GMPSRCPMILDVDYPPACLP-ELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTE  161 (741)
T ss_pred             cCceecceeeccccCccccc-cccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceecc
Confidence               11144444444443222 222334456778999996543  5667799998876543221            01122


Q ss_pred             CCeEEECCCCCCCCeEEEEEeEeCC--CCceeeEEEEEEEeccE--EEeccc-eeeeeccCeEEEEEEe-ecCCCCeEEE
Q psy15206        125 GSTLQIPRITKEDRGAYYCVAQNGI--GRGARRKIEVKVEFAPI--VTVQST-RIGQALHHDMDLDCHI-EAYPHPILYW  198 (232)
Q Consensus       125 ~~~l~i~~~~~~~~g~y~C~~~~~~--~~~~~~~~~l~v~~~p~--~~~~~~-~~~~~~g~~~~l~C~~-~~~p~~~~~W  198 (232)
                      .+.+.+...+..+.|.|+|.+.+..  +....+...+.+..+..  ...... ......|..+.|.|.+ .|+|.+.+.|
T Consensus       162 ~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w  241 (741)
T KOG3515|consen  162 PSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTW  241 (741)
T ss_pred             ccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhh
Confidence            4567777888899999999998853  22233333444433221  122222 2456789999999976 4678888999


Q ss_pred             eeCCEEec
Q psy15206        199 AKDGEIVV  206 (232)
Q Consensus       199 ~~~g~~~~  206 (232)
                      +++.....
T Consensus       242 ~~~s~~~~  249 (741)
T KOG3515|consen  242 YKDSRPQS  249 (741)
T ss_pred             ccccccch
Confidence            99875543

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.05  E-value=3.8e-10  Score=63.79  Aligned_cols=52  Identities=17%  Similarity=0.442  Sum_probs=40.7

Q ss_pred             cCeEEEEEEe-ecCCCCeEEEeeCCEEecC---------CC-eE-EEEEeccccCCceEEEEec
Q psy15206        179 HHDMDLDCHI-EAYPHPILYWAKDGEIVVN---------DE-YH-SISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       179 g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~---------~~-~~-~~~~~~~~~~d~g~Y~C~~  230 (232)
                      |++++|.|.+ .+.+...+.|++++..+..         .. .. .|.+.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999999 7777789999998754321         11 11 2888899999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.04  E-value=6.3e-10  Score=65.95  Aligned_cols=52  Identities=15%  Similarity=0.365  Sum_probs=40.8

Q ss_pred             CeEEEEEEeec--CCCCeEEEeeCCEEec--CC-CeE----------EEEEeccccCCceEEEEecC
Q psy15206        180 HDMDLDCHIEA--YPHPILYWAKDGEIVV--ND-EYH----------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       180 ~~~~l~C~~~~--~p~~~~~W~~~g~~~~--~~-~~~----------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +++.|.|.+.+  .+.+.|.|++||..+.  .. .+|          .|.+.++...|+|+|+|.|.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~   67 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQ   67 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEE
Confidence            46899999976  4467899999999885  22 122          47778889999999999974

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.04  E-value=2.2e-09  Score=63.50  Aligned_cols=57  Identities=18%  Similarity=0.390  Sum_probs=46.8

Q ss_pred             eeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+...... +.+..+..+|.|.|.|.+.
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~g~y~C~~~   65 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQNG-LFIPNVSPEDSGNYTCRAS   65 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESSE-EEESSEEGGGTEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeeee-eeeeeeccccCEEEEEEEE
Confidence            45788999999999999988999999999888754332 4446677899999999874

...

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.03  E-value=8.5e-10  Score=65.97  Aligned_cols=53  Identities=11%  Similarity=0.233  Sum_probs=42.3

Q ss_pred             cCeEEEEEEeecC--CCCeEEEeeCCEEecC--------------CCeEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAY--PHPILYWAKDGEIVVN--------------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~--p~~~~~W~~~g~~~~~--------------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+.+.|.|.+.+.  |.+.+.|.+++..+..              .....|.+.++..+|+|.|.|.|+
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~   69 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAAS   69 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEc
Confidence            6889999999999  7889999987643321              123577888899999999999985

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.03  E-value=8.7e-10  Score=64.59  Aligned_cols=50  Identities=26%  Similarity=0.431  Sum_probs=40.3

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.+.|+|++..+..+.         ...+.+.++...|.|.|+|.+.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   59 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAK   59 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEE
Confidence            3689999999999999999998765331         1356677788899999999874

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.02  E-value=8.8e-10  Score=64.57  Aligned_cols=50  Identities=22%  Similarity=0.439  Sum_probs=39.1

Q ss_pred             EEEEEEeec-CCCCeEEEeeCCEEecCC-------------CeEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEA-YPHPILYWAKDGEIVVND-------------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~-~p~~~~~W~~~g~~~~~~-------------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.+ .|.+.+.|+|+|..+...             ....|.+.++...|+|.|.|.|+
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~   64 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVS   64 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEE
Confidence            479999864 677899999999877422             12457778888899999999984

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.02  E-value=1.1e-09  Score=66.23  Aligned_cols=60  Identities=13%  Similarity=0.217  Sum_probs=46.2

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC----Ce-----EEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND----EY-----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~----~~-----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +....+..|+++.|.|.+.+ |.+.+.|+|++..+...    .+     ..+.+.++..+|+|.|.|.|.
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   71 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSV   71 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEe
Confidence            34456778999999999977 78899999998765432    12     235667788899999999974

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.02  E-value=7.9e-10  Score=65.67  Aligned_cols=53  Identities=13%  Similarity=0.360  Sum_probs=41.1

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCE---E--ecC---------CCeEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGE---I--VVN---------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~---~--~~~---------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+.+.|.|.+.|.|.|.+.|+|++.   .  +..         .....|.+.++..+|+|.|.|.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   67 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTAR   67 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEe
Confidence            6789999999999999999999731   1  111         112467778889999999999874

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.01  E-value=1.8e-09  Score=65.32  Aligned_cols=57  Identities=11%  Similarity=0.169  Sum_probs=45.9

Q ss_pred             eeeccCeEEEEEEeecCCCCeEEEeeCCEEe-c-------------------------CCCeEEEEEeccccCCceEEEE
Q psy15206        175 GQALHHDMDLDCHIEAYPHPILYWAKDGEIV-V-------------------------NDEYHSISNFGTSEGTTGSLQC  228 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~-~-------------------------~~~~~~~~~~~~~~~d~g~Y~C  228 (232)
                      .+..|++++|.|.+.+.+.+.+.|+++++.. .                         ..+.+.|.+.++..+|+|+|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            4568999999999999888899999665221 0                         2235789999999999999999


Q ss_pred             ecC
Q psy15206        229 KVP  231 (232)
Q Consensus       229 ~~~  231 (232)
                      .|.
T Consensus        83 ~v~   85 (94)
T cd07690          83 EVE   85 (94)
T ss_pred             EEC
Confidence            985

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.01  E-value=3.4e-09  Score=64.08  Aligned_cols=69  Identities=25%  Similarity=0.397  Sum_probs=53.8

Q ss_pred             CceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeC--CCC-cEEe-eCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         82 QLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAIL--PNG-QTIF-TGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~--~~~-~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      ....+.+|+.+.|.|.. .|.|.+.+.|++++....  .+. ++.. .++.|.|.++...|.|.|.|.+.+...
T Consensus        11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence            34567789999999975 568889999999986542  122 2222 368999999999999999999998654

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.01  E-value=1.9e-09  Score=64.32  Aligned_cols=53  Identities=9%  Similarity=0.248  Sum_probs=42.4

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCEEec-----------C--CCeEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGEIVV-----------N--DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~~~~-----------~--~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |++++|.|.+.+.|.+.+.|++.+....           .  .....|.+.++..+|+|.|.|.|+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~   66 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAH   66 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEE
Confidence            7889999999999999999998664211           1  124578888999999999999975

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.00  E-value=2.2e-09  Score=60.21  Aligned_cols=54  Identities=22%  Similarity=0.399  Sum_probs=44.2

Q ss_pred             ccCeEEEEEEeecCCCCeEEEeeCCEEecC-----CCeEEEEEeccccCCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEAYPHPILYWAKDGEIVVN-----DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-----~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|+.+.|.|.+.+.+.+.+.|++++..+..     .....|.+.++...|+|.|.|.+.
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   59 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAE   59 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEe
Confidence            478899999998898899999999877652     234467777888899999999874

>KOG3515|consensus

Probab=99.00  E-value=3.3e-09  Score=85.32  Aligned_cols=146  Identities=17%  Similarity=0.308  Sum_probs=109.0

Q ss_pred             EeecCCcEEEEeeeccCCC-CeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206         85 VAKEGQSVQLECHAEGHPI-PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      .+.+|+.+.|.|.+.+.|+ +.+.|++.++... .......+..|.......+..+.|.|.+.++.+......+.+.+.+
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~   96 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDY   96 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCcccc-cccccccCCceeeecchhhhhhhhhhhhcccccCceecceeecccc
Confidence            6778999999999988665 5799999988776 3334455677888888888888999999998777677788888888


Q ss_pred             ccEEEeccceeeeeccCeEEEEEEe--ecCCCCeEEEeeCCEEecCC-------------C----eEEEEEeccccCCce
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHI--EAYPHPILYWAKDGEIVVND-------------E----YHSISNFGTSEGTTG  224 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~--~~~p~~~~~W~~~g~~~~~~-------------~----~~~~~~~~~~~~d~g  224 (232)
                      +|.............+..+.+.|.+  .+.|.+++.|..++......             +    .-.+........+.|
T Consensus        97 ~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g  176 (741)
T KOG3515|consen   97 PPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNG  176 (741)
T ss_pred             CccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCc
Confidence            8876655555566788999999965  46677789999887543210             1    112233334558899


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      +|+|.+.
T Consensus       177 ~~tC~A~  183 (741)
T KOG3515|consen  177 NYTCPAN  183 (741)
T ss_pred             eeEcccc
Confidence            9999874

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.00  E-value=1e-09  Score=66.37  Aligned_cols=58  Identities=17%  Similarity=0.224  Sum_probs=45.9

Q ss_pred             eeeeccCeEEEEEEeecC-----CCCeEEEeeCCEEecCCCe-----EEEEEeccccCCceEEEEecC
Q psy15206        174 IGQALHHDMDLDCHIEAY-----PHPILYWAKDGEIVVNDEY-----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~-----p~~~~~W~~~g~~~~~~~~-----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+..|+++.|.|...+.     |.|.+.|+|||..+.....     ..|.+.++..+|+|.|+|.+.
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~   72 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLT   72 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEE
Confidence            356789999999986432     5678999999998865432     457778889999999999984

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.00  E-value=1.4e-09  Score=63.72  Aligned_cols=50  Identities=20%  Similarity=0.454  Sum_probs=35.2

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEec--CCC-------eEEEEEeccc----cCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVV--NDE-------YHSISNFGTS----EGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~--~~~-------~~~~~~~~~~----~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.|.|+|+|+|..+.  .+.       ...+.+....    ..|+|.|+|.|.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~   63 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFAR   63 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEE
Confidence            4689999999999999999997652  121       1233443321    246999999974

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.00  E-value=2.9e-09  Score=63.82  Aligned_cols=57  Identities=19%  Similarity=0.405  Sum_probs=46.5

Q ss_pred             eeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC----------CeEEEEEeccccCCceEEEEecC
Q psy15206        175 GQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND----------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~----------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+..|+.+.|.|.+.+.|.+.+.|++++..+..+          ..+.+.+.++..+|.|.|.|.+.
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~   71 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVE   71 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEE
Confidence            4567999999999999999999999998776422          22457777888999999999874

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.99  E-value=5.2e-09  Score=61.87  Aligned_cols=71  Identities=34%  Similarity=0.698  Sum_probs=54.3

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      ..+..|+.+.|.|.+.+.+...+.|++++..+..      ....+.+..+..+|.|.|.|.+.+..+...+..+.+.
T Consensus         9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~------~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~   79 (80)
T PF13895_consen    9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS------SQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVT   79 (80)
T ss_dssp             SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE------ESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee------eeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEee
Confidence            4577899999999999888889999998866541      2223777889999999999999986554344444444

...

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.97  E-value=3.4e-09  Score=64.71  Aligned_cols=61  Identities=18%  Similarity=0.277  Sum_probs=47.1

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeCC--------EE--------ec--CCCeEEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDG--------EI--------VV--NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g--------~~--------~~--~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.++.+.+|+++.|.|.+.+.|.+.+.|++.+        ..        +.  ....+.|.+.++..+|+|.|.|.+.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            44567889999999999999999999997521        11        10  1234677888999999999999874

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.97  E-value=2.5e-09  Score=64.10  Aligned_cols=62  Identities=13%  Similarity=0.193  Sum_probs=48.4

Q ss_pred             ccceeeeeccCeEEEEEEeec-CCCCeEEEeeCCEEecCC---CeEEEEEeccccCCceEEEEecC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEA-YPHPILYWAKDGEIVVND---EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~~~---~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|....+..|++++|.|.+.+ .|.+.+.|++++..+...   ....|.+..+..+|+|.|.|.+.
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   72 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGS   72 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEe
Confidence            355667789999999999865 678899999988654321   23467788889999999999874

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.96  E-value=1.3e-09  Score=64.31  Aligned_cols=50  Identities=26%  Similarity=0.428  Sum_probs=37.6

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEec--------CC------CeEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVV--------ND------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~--------~~------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++|.|.+.|.|.|.+.|+|++....        ..      ....|.+.++..+|+|.|.|.|.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~   64 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVS   64 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEE
Confidence            4799999999999999999643210        11      22456667778899999999984

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.96  E-value=1.5e-08  Score=59.86  Aligned_cols=66  Identities=17%  Similarity=0.288  Sum_probs=54.5

Q ss_pred             CceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      ....+..|.++.|.|...+. ...+.|++++..+..+.+.......|.|..++..|+|.|.|.+...
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~   69 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEE   69 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecC
Confidence            34577889999999998764 5589999999988666666666677889999999999999998754

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.96  E-value=6.2e-09  Score=63.41  Aligned_cols=67  Identities=16%  Similarity=0.264  Sum_probs=48.0

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCe-EEEeeCCEEecCC--CeE-------------EEEEeccccCC-ceEE
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVND--EYH-------------SISNFGTSEGT-TGSL  226 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~g~~~~~~--~~~-------------~~~~~~~~~~d-~g~Y  226 (232)
                      ||.+ .......+..|+.+.|.|.+.+.|.|. |.|.+++..+...  .+|             .|.+.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            4555 455667788999999999999999884 7888877655432  333             44455555456 7999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      .|.|+
T Consensus        81 ~C~a~   85 (98)
T cd05898          81 NCTAW   85 (98)
T ss_pred             EEEEE
Confidence            99985

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.96  E-value=4.1e-09  Score=63.58  Aligned_cols=71  Identities=18%  Similarity=0.273  Sum_probs=55.8

Q ss_pred             CCCceEeecCCcEEEEee-eccCCCCeEEEEeCCeeeCC-CCcEEe-eCCeEEECCCCCCCCe-EEEEEeEeCCC
Q psy15206         80 SPQLSVAKEGQSVQLECH-AEGHPIPTISWRRENNAILP-NGQTIF-TGSTLQIPRITKEDRG-AYYCVAQNGIG  150 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~~~~~-~~~~~~-~~~~l~i~~~~~~~~g-~y~C~~~~~~~  150 (232)
                      ......+.+|+.+.|.|. ..|.|.|.+.|++++..... ..+... .++.|.|.++...|.| .|.|.+.+...
T Consensus         9 ~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845           9 KIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             ccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            345678889999999997 68899999999987655332 333333 3589999999999999 89999998643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.96  E-value=2.3e-08  Score=60.90  Aligned_cols=72  Identities=29%  Similarity=0.492  Sum_probs=54.7

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCC--CcEEe--------eCCeEEECCCCCCC-CeEEEEEeEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPN--GQTIF--------TGSTLQIPRITKED-RGAYYCVAQN  147 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~--~~~~~--------~~~~l~i~~~~~~~-~g~y~C~~~~  147 (232)
                      ........+|+.+.|.|.+.+.|.| .+.|...+..+...  .++..        ..+.|.|.++...| .|.|.|.+.|
T Consensus         7 ~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N   86 (98)
T cd05898           7 SEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWN   86 (98)
T ss_pred             cCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEe
Confidence            4555677899999999999888876 47898877655332  23322        23579999998877 6899999999


Q ss_pred             CCCC
Q psy15206        148 GIGR  151 (232)
Q Consensus       148 ~~~~  151 (232)
                      ..|.
T Consensus        87 ~~G~   90 (98)
T cd05898          87 SFGS   90 (98)
T ss_pred             CCcc
Confidence            9887

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.95  E-value=2.1e-08  Score=61.43  Aligned_cols=69  Identities=19%  Similarity=0.394  Sum_probs=50.6

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeee--------CCCCcEEe-----eCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI--------LPNGQTIF-----TGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~--------~~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .....+.+|+++.|.|.+.+.+.+.+.|++.+..+        ....++..     ....|.|.+++.+|.|.|.|.+..
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            45567889999999999988777889998643321        11123222     134799999999999999999987


Q ss_pred             CC
Q psy15206        148 GI  149 (232)
Q Consensus       148 ~~  149 (232)
                      ..
T Consensus        84 ~~   85 (95)
T cd05717          84 MP   85 (95)
T ss_pred             CC
Confidence            54

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.92  E-value=3.4e-09  Score=59.82  Aligned_cols=57  Identities=33%  Similarity=0.657  Sum_probs=43.2

Q ss_pred             CCcEEEEeee-ccCCCCeEEEEeCCeeeCCCCcEEe--eCC----eEEECCCCCCCCeEEEEEe
Q psy15206         89 GQSVQLECHA-EGHPIPTISWRRENNAILPNGQTIF--TGS----TLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        89 g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~--~~~----~l~i~~~~~~~~g~y~C~~  145 (232)
                      |+++.|.|.+ .+.+...+.|++++...........  ...    .|.|.+++.+|+|.|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            6889999999 6667778999999876543322211  112    2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.90  E-value=1.5e-08  Score=60.67  Aligned_cols=72  Identities=26%  Similarity=0.348  Sum_probs=49.9

Q ss_pred             CCcEEEEeeeccCCC--CeEEEEeCCeeeCCC---C--cE-----EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206         89 GQSVQLECHAEGHPI--PTISWRRENNAILPN---G--QT-----IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK  156 (232)
Q Consensus        89 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~---~--~~-----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  156 (232)
                      |+++.|.|.+.+.+.  ..+.|..++......   .  +.     ....+.|.|.+++..|+|.|+|.+.|..+. ....
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~-~~~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMI-AKNS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceE-eccc
Confidence            678999999987554  468998877643110   1  00     112468999999999999999999997664 3344


Q ss_pred             EEEEE
Q psy15206        157 IEVKV  161 (232)
Q Consensus       157 ~~l~v  161 (232)
                      ..+.|
T Consensus        80 t~~~V   84 (86)
T cd05862          80 TIVIV   84 (86)
T ss_pred             EEEEE
Confidence            44444

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>smart00409 IG Immunoglobulin

Probab=98.88  E-value=9.7e-08  Score=56.88  Aligned_cols=69  Identities=36%  Similarity=0.700  Sum_probs=53.2

Q ss_pred             ceEeecCCcEEEEeeeccCCCCeEEEEeC-CeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIPTISWRRE-NNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+....    ...|.|.++...|.|.|.|.+.+..+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            34567899999999998877778999998 6655423332221    257999999999999999999976655

>smart00410 IG_like Immunoglobulin like

Probab=98.88  E-value=9.7e-08  Score=56.88  Aligned_cols=69  Identities=36%  Similarity=0.700  Sum_probs=53.2

Q ss_pred             ceEeecCCcEEEEeeeccCCCCeEEEEeC-CeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIPTISWRRE-NNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+....+....    ...|.|.++...|.|.|.|.+.+..+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            34567899999999998877778999998 6655423332221    257999999999999999999976655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.88  E-value=3.6e-08  Score=59.96  Aligned_cols=67  Identities=15%  Similarity=0.230  Sum_probs=50.7

Q ss_pred             eEeecCCcEEEEeeec-----------cCCCCeEEEEeCCeeeCCC-------CcEEeeCCeEEECCCCCCCCeEEEEEe
Q psy15206         84 SVAKEGQSVQLECHAE-----------GHPIPTISWRRENNAILPN-------GQTIFTGSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~-----------~~~~~~~~W~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      ..+.+|+.+.|.|...           ......+.|+|++......       .+....+..|.|.++..+|+|.|+|.+
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~   89 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL   89 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence            5677899999999962           1123479999997544332       245566789999999999999999999


Q ss_pred             EeCCC
Q psy15206        146 QNGIG  150 (232)
Q Consensus       146 ~~~~~  150 (232)
                      .|...
T Consensus        90 rN~t~   94 (104)
T cd05896          90 RNSTY   94 (104)
T ss_pred             CCCCc
Confidence            98653

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.87  E-value=3.4e-08  Score=57.56  Aligned_cols=60  Identities=23%  Similarity=0.397  Sum_probs=46.2

Q ss_pred             EEEEeeecc-CCCCeEEEEeCCeeeCCCC------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         92 VQLECHAEG-HPIPTISWRRENNAILPNG------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      +.|.|...+ .|++.+.||+++..+....      ......+.|.+.....+|.+.|+|.+.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            689999765 7888999999999875422      11123357899889999999999999997654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.87  E-value=2.8e-08  Score=60.14  Aligned_cols=67  Identities=16%  Similarity=0.242  Sum_probs=50.2

Q ss_pred             EeecCCcEEEEeee-cc----CCCCeEEEEeCCeeeCCCC-cEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         85 VAKEGQSVQLECHA-EG----HPIPTISWRRENNAILPNG-QTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        85 ~~~~g~~~~l~C~~-~~----~~~~~~~W~~~~~~~~~~~-~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .+..|.+..|.|.- .+    .+.+.+.|||++..+.... .+..  ..+.|.|.++..+|+|.|+|.+.+..+.
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            45578899999973 33    3456899999998875333 2222  2458999999999999999999987544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.87  E-value=5.1e-09  Score=63.29  Aligned_cols=59  Identities=15%  Similarity=0.178  Sum_probs=44.0

Q ss_pred             eeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEe--cCCC-------eEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIV--VNDE-------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~--~~~~-------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+.+|+.+.|.|.. .|.|.+.+.|++++..+  ..+.       .-.|-..+++.+|+|.|.|.|.
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~   80 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVS   80 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEE
Confidence            3457789999999974 78899999999998643  2222       1234445677799999999985

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.84  E-value=2e-08  Score=60.86  Aligned_cols=66  Identities=23%  Similarity=0.404  Sum_probs=47.9

Q ss_pred             EeecCCcEEEEeeeccCCCCeEEEEeCCeee-CC-------------CCcEEe-------eCCeEEECCCCCCCCeEEEE
Q psy15206         85 VAKEGQSVQLECHAEGHPIPTISWRRENNAI-LP-------------NGQTIF-------TGSTLQIPRITKEDRGAYYC  143 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~-~~-------------~~~~~~-------~~~~l~i~~~~~~~~g~y~C  143 (232)
                      ....|+++.|.|.+.+.+.+.+.|++++... ..             ..++..       ...+|.|.++..+|+|.|+|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            4567999999999988888899999665321 10             011111       11369999999999999999


Q ss_pred             EeEeCCC
Q psy15206        144 VAQNGIG  150 (232)
Q Consensus       144 ~~~~~~~  150 (232)
                      .+.+..+
T Consensus        83 ~v~~~~~   89 (94)
T cd07690          83 EVEDKKE   89 (94)
T ss_pred             EECCccc
Confidence            9987644

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.83  E-value=1.5e-08  Score=61.40  Aligned_cols=66  Identities=12%  Similarity=0.151  Sum_probs=49.6

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+.+.+. ..+..|++++|+|... .+...+.|+|+|....      ......+.+..++.+|+|.|+|...
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~   73 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYR   73 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEE
Confidence            356666664 3577999999999885 5566899999987532      2234567778889999999999863

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.81  E-value=8.4e-09  Score=62.40  Aligned_cols=57  Identities=19%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             eeeccCeEEEEEE-eecC----CCCeEEEeeCCEEecCC--------CeEEEEEeccccCCceEEEEecC
Q psy15206        175 GQALHHDMDLDCH-IEAY----PHPILYWAKDGEIVVND--------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       175 ~~~~g~~~~l~C~-~~~~----p~~~~~W~~~g~~~~~~--------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+..|.+..|.|. ..++    +.+.+.|+||+..+...        +...|.+.++..+|+|.|+|.++
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~   75 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQ   75 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEE
Confidence            4567888999997 3333    56689999999887532        22357778889999999999985

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.80  E-value=1e-08  Score=59.73  Aligned_cols=67  Identities=15%  Similarity=0.328  Sum_probs=46.6

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCC-CCeEEEe------eCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYP-HPILYWA------KDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~------~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+.......+. +.|.|.+.+.+ .+.++|+      .............|.+.++...|.|.|+|.|+
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~   74 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIAS   74 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEE
Confidence            35666665554443333 99999998887 7789999      22222223345677777888999999999984

...

>PHA03376 BARF1; Provisional

Probab=98.79  E-value=2.5e-07  Score=61.71  Aligned_cols=118  Identities=19%  Similarity=0.277  Sum_probs=69.8

Q ss_pred             ceEeecCCcEEEEeeecc---CCCCeEEEEeCCe----ee-CC------------CCcEEe----eCCeEEECCCCCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEG---HPIPTISWRRENN----AI-LP------------NGQTIF----TGSTLQIPRITKEDR  138 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~---~~~~~~~W~~~~~----~~-~~------------~~~~~~----~~~~l~i~~~~~~~~  138 (232)
                      .+....|+.+.|+|....   ...-.+.|++.+.    -. ..            ..+...    .+-+|.|.+++.+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            345567999999999753   2234699999532    11 00            011111    223789999999999


Q ss_pred             eEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeC
Q psy15206        139 GAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD  201 (232)
Q Consensus       139 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~  201 (232)
                      |.|+|.+...... ..+.-.+.+..+-...++........-+...+.|...|+|.|.++|.-+
T Consensus       100 GtY~C~fQkge~~-~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~  161 (221)
T PHA03376        100 GNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMP  161 (221)
T ss_pred             ceEEEEEEcCCCc-eeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccc
Confidence            9999999875432 2111122221222222222111112245568999999999999999865

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.78  E-value=3.8e-08  Score=60.28  Aligned_cols=60  Identities=17%  Similarity=0.260  Sum_probs=45.5

Q ss_pred             ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEE---------ec---------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        172 TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI---------VV---------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~---------~~---------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+..+..|+++.|.|.+.+.+.+.+.|++.+..         +.         ....+.|.+.+++.+|+|.|.|.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~   82 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY   82 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence            345678999999999998888889999752111         11         1234678888999999999999874

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.75  E-value=5.4e-07  Score=54.67  Aligned_cols=80  Identities=20%  Similarity=0.280  Sum_probs=60.0

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCe-EEEEeCCeeeCCCCc--EEe-------eCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQ--TIF-------TGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~--~~~-------~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .....+.+|+++.|.|.+.++|.|. +.|.+++..+.....  ...       ..+.|.+.+++.++.|.|+|.+.|...
T Consensus        10 ~~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~   89 (101)
T cd05860          10 NTTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA   89 (101)
T ss_pred             CceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence            3456788999999999999999997 999988765422111  111       125799999999999999999999876


Q ss_pred             CceeeEEEEEE
Q psy15206        151 RGARRKIEVKV  161 (232)
Q Consensus       151 ~~~~~~~~l~v  161 (232)
                      . .+..+.+.|
T Consensus        90 ~-~s~tF~l~v   99 (101)
T cd05860          90 S-ASVTFNVYV   99 (101)
T ss_pred             e-EEEEEEEEE
Confidence            6 445555554

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.73  E-value=6e-08  Score=58.78  Aligned_cols=64  Identities=23%  Similarity=0.382  Sum_probs=47.9

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC-cEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      ..+..|++++|.|... .+...+.|+++|....... ........+.|.+++.+|+|.|+|...+.
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            4677899999999885 5666799999987533211 11122346899999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.73  E-value=3.7e-08  Score=58.26  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=44.9

Q ss_pred             eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEE-----EEEeccccCCceEEEEec
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHS-----ISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~-----~~~~~~~~~d~g~Y~C~~  230 (232)
                      ...+..|+++.|.|...+. .+.+.|+++|..+..+.++.     +.+..+...|+|.|.|.+
T Consensus         5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s   66 (85)
T cd05872           5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYS   66 (85)
T ss_pred             EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEE
Confidence            4567899999999999776 56999999999886554443     334456779999999986

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.71  E-value=6.6e-07  Score=54.23  Aligned_cols=67  Identities=15%  Similarity=0.323  Sum_probs=49.6

Q ss_pred             CceEeecCCcEEEEeeeccCCCCeEEEEeCCeee--------CCCCcEEee-----CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI--------LPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~--------~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      .+..+.+|+++.|.|.+.+.....+.|++.+..+        ..+.++...     .-+|.|.+++.+|.|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            4577889999999999988766678888766432        122333321     126999999999999999998764

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.69  E-value=2.8e-07  Score=57.07  Aligned_cols=76  Identities=21%  Similarity=0.368  Sum_probs=50.5

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCee-----e----CC----------CCc-EEeeCCeEEECCCCCCCCeEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNA-----I----LP----------NGQ-TIFTGSTLQIPRITKEDRGAYYC  143 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~-----~----~~----------~~~-~~~~~~~l~i~~~~~~~~g~y~C  143 (232)
                      ..+.+|+++.|.|.........+.|++....     +    ..          ..+ ....+++|.|.+++..|.|.|.|
T Consensus         8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~   87 (105)
T cd05774           8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL   87 (105)
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence            3456899999999765444447999995321     1    00          111 12335789999999999999999


Q ss_pred             EeEeCCCCceeeEEEE
Q psy15206        144 VAQNGIGRGARRKIEV  159 (232)
Q Consensus       144 ~~~~~~~~~~~~~~~l  159 (232)
                      .+.+.........+.+
T Consensus        88 ~v~~~~~~~~~~~v~l  103 (105)
T cd05774          88 QTITTNFQVEQATVHL  103 (105)
T ss_pred             EEEeCCccEEEEEEEE
Confidence            9998754434343333

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.66  E-value=7.4e-08  Score=58.16  Aligned_cols=61  Identities=13%  Similarity=0.237  Sum_probs=45.8

Q ss_pred             cceeeeeccCeEEEEEE-eecCCCCeEEEeeCCEE-ecCCCe------EEEEEeccccCCce-EEEEecC
Q psy15206        171 STRIGQALHHDMDLDCH-IEAYPHPILYWAKDGEI-VVNDEY------HSISNFGTSEGTTG-SLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~-~~~~p~~~~~W~~~g~~-~~~~~~------~~~~~~~~~~~d~g-~Y~C~~~  231 (232)
                      .....+.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.+      -.|.+.++...|+| .|.|.|.
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~   79 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAH   79 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEE
Confidence            35567889999999997 69999999999987543 222222      34555567789999 7999875

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.65  E-value=2.5e-07  Score=56.02  Aligned_cols=59  Identities=8%  Similarity=0.132  Sum_probs=45.5

Q ss_pred             eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEe--------c----------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIV--------V----------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~--------~----------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++.+.+|+++.|.|.+.+.....+.|++-|..+        .          ....+.|.+.++..+|+|.|.|.+.
T Consensus         6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~   82 (95)
T cd05881           6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY   82 (95)
T ss_pred             ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence            456789999999999988766668887655322        1          2356778888889999999999874

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.64  E-value=4.2e-07  Score=53.93  Aligned_cols=58  Identities=28%  Similarity=0.423  Sum_probs=42.0

Q ss_pred             EEEEeeecc-CCCCeEEEEeCCeeeCCCCc---------EEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         92 VQLECHAEG-HPIPTISWRRENNAILPNGQ---------TIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +.|.|.+.| .|.+.+.|++++..+.....         .....+.|.+.....+|.|.|+|.+.|..
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~   69 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA   69 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence            689999987 67789999999987542211         01112357777777788899999999864

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.64  E-value=2.3e-07  Score=56.27  Aligned_cols=60  Identities=22%  Similarity=0.246  Sum_probs=46.7

Q ss_pred             ceeeeeccCeEEEEEEeecCCCCe-EEEeeCCEEecCCC------------e--EEEEEeccccCCceEEEEecC
Q psy15206        172 TRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVNDE------------Y--HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~g~~~~~~~------------~--~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ....+..|+++.|.|.++++|+|. +.|.+++..+....            +  ..|.+..+...|+|.|+|.|.
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~   85 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVS   85 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEE
Confidence            456788999999999999999997 99999876543211            2  245556677799999999874

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.62  E-value=2.3e-07  Score=58.39  Aligned_cols=62  Identities=10%  Similarity=0.230  Sum_probs=47.4

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCE---E-------------------ec---CCCeEEEEEeccccCCce
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE---I-------------------VV---NDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~---~-------------------~~---~~~~~~~~~~~~~~~d~g  224 (232)
                      .+..+.+..|++++|.|...+.+...+.|+|...   .                   +.   ....+.|.+.+++.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            3556678899999999999877777899998531   0                   11   124678888889999999


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      .|.|.+.
T Consensus        84 ~Y~C~~~   90 (109)
T cd04983          84 VYFCALS   90 (109)
T ss_pred             EEEEEEe
Confidence            9999974

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>smart00410 IG_like Immunoglobulin like

Probab=98.62  E-value=4.4e-07  Score=53.98  Aligned_cols=59  Identities=15%  Similarity=0.440  Sum_probs=46.3

Q ss_pred             eeeeeccCeEEEEEEeecCCCCeEEEeeC-CEEecC---------CCeEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHPILYWAKD-GEIVVN---------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~-g~~~~~---------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+..         .....+.+.++...|+|.|.|.+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~   71 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAAT   71 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEE
Confidence            34567899999999998887889999998 665531         113567777888899999999874

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.62  E-value=4.4e-07  Score=53.98  Aligned_cols=59  Identities=15%  Similarity=0.440  Sum_probs=46.3

Q ss_pred             eeeeeccCeEEEEEEeecCCCCeEEEeeC-CEEecC---------CCeEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHPILYWAKD-GEIVVN---------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~-g~~~~~---------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+..         .....+.+.++...|+|.|.|.+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~   71 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAAT   71 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEE
Confidence            34567899999999998887889999998 665531         113567777888899999999874

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.62  E-value=2e-07  Score=55.81  Aligned_cols=53  Identities=11%  Similarity=0.227  Sum_probs=39.9

Q ss_pred             cCeEEEEEEeecCCCC--eEEEeeCCEEec-----C----------CCeEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHP--ILYWAKDGEIVV-----N----------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~--~~~W~~~g~~~~-----~----------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+++.|.|.+.+.+.+  .+.|.+.+....     .          .....|.+.++...|+|.|+|.|+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~   70 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTAS   70 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEe
Confidence            6889999999876644  689988764321     1          123467888899999999999974

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.61  E-value=3.8e-07  Score=55.45  Aligned_cols=71  Identities=25%  Similarity=0.416  Sum_probs=48.8

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCCC------------------CcE-EeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILPN------------------GQT-IFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~------------------~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      |+++.|.|.........+.|++........                  .+. ...+.+|.|.+++.+|+|.|.|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            688999998876555679999865332110                  111 1134689999999999999999999876


Q ss_pred             CCceeeEEEE
Q psy15206        150 GRGARRKIEV  159 (232)
Q Consensus       150 ~~~~~~~~~l  159 (232)
                      +......+.|
T Consensus        81 ~~~~~~~~~l   90 (92)
T cd05741          81 GVTENAKFFL   90 (92)
T ss_pred             CcEEEEEEEE
Confidence            5534444433

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.61  E-value=1.8e-07  Score=56.52  Aligned_cols=57  Identities=14%  Similarity=0.238  Sum_probs=41.4

Q ss_pred             eeeeccCeEEEEEEeecCCCCeEEEeeCC--EE----ecCCCe-----EEEEEeccccCCceEEEEecC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHPILYWAKDG--EI----VVNDEY-----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~g--~~----~~~~~~-----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +...+|+++.|.|.. +.|.+.+.|+|++  ..    +....+     ..|.+.++..+|+|.|.|.+.
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~   73 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAV   73 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEE
Confidence            456789999999997 5788899999832  11    111122     246677788899999999984

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.61  E-value=1.7e-07  Score=54.67  Aligned_cols=50  Identities=18%  Similarity=0.316  Sum_probs=37.2

Q ss_pred             EEEEEEe-ecCCCCeEEEeeCCEEecCC-------CeE----EEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHI-EAYPHPILYWAKDGEIVVND-------EYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~-~~~p~~~~~W~~~g~~~~~~-------~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|+|.. .|.|++.+.|+|||..+...       ..+    .|.+......|.+.|+|+|.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~   63 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEAS   63 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEE
Confidence            6899996 67888899999999987532       112    34445556688899999984

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.56  E-value=3.2e-07  Score=57.78  Aligned_cols=61  Identities=11%  Similarity=0.220  Sum_probs=45.8

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCE--E---e-----------------------cCCCeEEEEEeccccC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE--I---V-----------------------VNDEYHSISNFGTSEG  221 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~--~---~-----------------------~~~~~~~~~~~~~~~~  221 (232)
                      .|....+.+|++++|.|...+ +...+.|+|...  .   +                       .....+.|.+.++..+
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~   82 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE   82 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence            455667889999999999987 667899998531  0   0                       0113467788888889


Q ss_pred             CceEEEEecC
Q psy15206        222 TTGSLQCKVP  231 (232)
Q Consensus       222 d~g~Y~C~~~  231 (232)
                      |+|.|.|.+.
T Consensus        83 Dsg~Y~Ca~~   92 (110)
T cd05899          83 DSAVYLCASS   92 (110)
T ss_pred             hCEEEEEEee
Confidence            9999999875

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.56  E-value=2e-06  Score=56.56  Aligned_cols=95  Identities=22%  Similarity=0.309  Sum_probs=57.5

Q ss_pred             eeeEEEEeeee------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccC-CC-CeEEEEeCCeeeCC-----CC-
Q psy15206         54 LGRLHLAIPYT------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-PTISWRRENNAILP-----NG-  119 (232)
Q Consensus        54 ~~~~~~~~~~~------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~-----~~-  119 (232)
                      .|.|.|...+.      .+.|.|..+|.... .+.......|+.+.|.|.+.|. |. ..+.|++++.....     .. 
T Consensus        13 ~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~-~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~   91 (139)
T cd05771          13 EGTYICSVSTPPHQAQQIIQLSVSEPPRVRL-SLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNV   91 (139)
T ss_pred             CEEEEEEEEccCcceeeEEEEEEecCCceEE-eCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCe
Confidence            45555554222      55677777776643 2333333468889999999985 43 47999998754211     11 


Q ss_pred             ----------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206        120 ----------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       120 ----------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                                ......+.|.+..-...+...|.|.+.+..
T Consensus        92 ~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          92 SFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             EecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence                      011112356666555556679999998854

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.56  E-value=4.4e-07  Score=55.25  Aligned_cols=64  Identities=14%  Similarity=0.202  Sum_probs=46.3

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec---------CCCeEEEEEeccccCCceEEEEec
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV---------NDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~---------~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      |.+...+. ..+..|++++|.|.... ....+.|+|+|....         ......+.+..++.+|+|.|.|..
T Consensus         2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~   74 (94)
T cd05711           2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYG   74 (94)
T ss_pred             CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEE
Confidence            55555454 45779999999998755 445799999885422         112446677788999999999985

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.55  E-value=1.7e-06  Score=50.65  Aligned_cols=72  Identities=18%  Similarity=0.381  Sum_probs=48.3

Q ss_pred             EEEEeeecc-CCCCeEEEEeCCeeeCCCCcE-------EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206         92 VQLECHAEG-HPIPTISWRRENNAILPNGQT-------IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus        92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      +.|.|.+.| .|...|.|++++..+......       ....+.|.+..-..+|...|+|.+.|..-........|.|.+
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            679999877 677789999999887543211       112346777655666666999999986544355555665543

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.55  E-value=5.1e-07  Score=53.60  Aligned_cols=50  Identities=18%  Similarity=0.480  Sum_probs=34.8

Q ss_pred             EEEEEEeec-CCCCeEEEeeCCEEecCC----------CeE----EEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEA-YPHPILYWAKDGEIVVND----------EYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~-~p~~~~~W~~~g~~~~~~----------~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.| .|.+.+.|+|+|..+...          ..+    .+.+......|.|.|+|.|.
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~   66 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRAR   66 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEc
Confidence            689999987 588899999999865422          111    23333444467889999984

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.52  E-value=1.7e-07  Score=54.43  Aligned_cols=58  Identities=41%  Similarity=0.693  Sum_probs=40.7

Q ss_pred             CcEEEEeeeccCC-CCeEEEEeCCee-eCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         90 QSVQLECHAEGHP-IPTISWRRENNA-ILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        90 ~~~~l~C~~~~~~-~~~~~W~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      ..+.|.|.+.+.+ .+.++|+..... ...........+.|.|.++..+|.|.|+|.+.|
T Consensus        16 ~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   16 GSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             eeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3399999998877 678999911111 011112233456899999999999999999976

...

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.48  E-value=2.7e-06  Score=53.39  Aligned_cols=74  Identities=24%  Similarity=0.447  Sum_probs=48.8

Q ss_pred             cCCcEEEEeeeccCC------------CCeEEEEeCCe--e---e-----------CCCCcEEe-------eCCeEEECC
Q psy15206         88 EGQSVQLECHAEGHP------------IPTISWRRENN--A---I-----------LPNGQTIF-------TGSTLQIPR  132 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~------------~~~~~W~~~~~--~---~-----------~~~~~~~~-------~~~~l~i~~  132 (232)
                      .|++++|.|......            .+.+.|++...  .   +           ....+...       .+.+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            378999999986432            35799998421  0   0           00112221       245899999


Q ss_pred             CCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      ++.+|+|.|+|.+.++... ....+.|.|.
T Consensus        81 l~~sDsG~Y~C~V~~g~~~-~~~~v~l~v~  109 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIED-NYDTVEVQVK  109 (112)
T ss_pred             cccccCEEEEEEEecCCCC-ceeEEEEEEE
Confidence            9999999999999976554 4455555554

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.44  E-value=4.6e-06  Score=52.12  Aligned_cols=74  Identities=28%  Similarity=0.520  Sum_probs=49.9

Q ss_pred             cCCcEEEEeeeccCC------CCeEEEEeCC---e-e--eC--CCC----------cEE-----eeCCeEEECCCCCCCC
Q psy15206         88 EGQSVQLECHAEGHP------IPTISWRREN---N-A--IL--PNG----------QTI-----FTGSTLQIPRITKEDR  138 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~------~~~~~W~~~~---~-~--~~--~~~----------~~~-----~~~~~l~i~~~~~~~~  138 (232)
                      .|+++.|.|.....+      ...+.|++..   . .  +.  ...          +..     ....+|.|.+++.+|.
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            478999999986542      4579999862   1 0  10  010          011     1235899999999999


Q ss_pred             eEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        139 GAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       139 g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      |.|.|.+.+..+. ..+.+.|.|.
T Consensus        81 G~Y~C~v~~~~~~-~~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEVIDGIED-EQDTVELEVR  103 (106)
T ss_pred             EEEEEEEEcCCCc-eEEEEEEEEE
Confidence            9999999986543 5566676664

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.44  E-value=7.9e-07  Score=54.15  Aligned_cols=58  Identities=14%  Similarity=0.066  Sum_probs=39.9

Q ss_pred             eeeeccCeEEEEEEee-----------cCCCCeEEEeeCCEEecCCC------------eEEEEEeccccCCceEEEEec
Q psy15206        174 IGQALHHDMDLDCHIE-----------AYPHPILYWAKDGEIVVNDE------------YHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~-----------~~p~~~~~W~~~g~~~~~~~------------~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      ..+.+|+.+.|.|...           ......+.|+|++..+....            ...|.+..+..+|+|.|+|.+
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~   89 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL   89 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence            4567899999999861           11233799999974433211            224555567889999999987


Q ss_pred             C
Q psy15206        231 P  231 (232)
Q Consensus       231 ~  231 (232)
                      .
T Consensus        90 r   90 (104)
T cd05896          90 R   90 (104)
T ss_pred             C
Confidence            4

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.41  E-value=2.5e-06  Score=51.93  Aligned_cols=65  Identities=17%  Similarity=0.259  Sum_probs=46.1

Q ss_pred             CceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC----cEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG----QTIFTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      ...++.+|++++|.|.... ....+.|++++.......    ........+.|..++.+|+|.|.|....
T Consensus         8 p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           8 PSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            3456778999999998754 445799999886532210    0011223689999999999999999753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.41  E-value=3.1e-06  Score=53.16  Aligned_cols=69  Identities=25%  Similarity=0.437  Sum_probs=50.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCee--e------------CCCCcEEe------eCCeEEECCCCCCCCe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA--I------------LPNGQTIF------TGSTLQIPRITKEDRG  139 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~--~------------~~~~~~~~------~~~~l~i~~~~~~~~g  139 (232)
                      .+....+.+|+++.|.|...+.+...+.|++....  .            ....++..      ....|.|.+++.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            34566788999999999998776778999985321  0            01122222      1237999999999999


Q ss_pred             EEEEEeEeC
Q psy15206        140 AYYCVAQNG  148 (232)
Q Consensus       140 ~y~C~~~~~  148 (232)
                      .|.|.+.+.
T Consensus        84 ~Y~C~~~~~   92 (109)
T cd04983          84 VYFCALSES   92 (109)
T ss_pred             EEEEEEecC
Confidence            999999864

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.39  E-value=3.2e-06  Score=51.39  Aligned_cols=65  Identities=23%  Similarity=0.413  Sum_probs=41.5

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec-----------CCCeEE-EEEeccccCCceEEEEe
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV-----------NDEYHS-ISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~-----------~~~~~~-~~~~~~~~~d~g~Y~C~  229 (232)
                      +|.+.+.+....   ++.++|.|.+.|+.++  .+.|+++|..+.           .++.|. .+...+...+.+.|+|+
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~   78 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR   78 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence            455555443322   6789999999997554  799999985321           122333 23334455688999999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus        79 V~   80 (93)
T cd07698          79 VE   80 (93)
T ss_pred             EE
Confidence            73

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.38  E-value=8.9e-06  Score=50.82  Aligned_cols=74  Identities=20%  Similarity=0.499  Sum_probs=49.3

Q ss_pred             cCCcEEEEeeeccCC------CCeEEEEeCCee-------eCC-----------CCcEEee-----CCeEEECCCCCCCC
Q psy15206         88 EGQSVQLECHAEGHP------IPTISWRRENNA-------ILP-----------NGQTIFT-----GSTLQIPRITKEDR  138 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~------~~~~~W~~~~~~-------~~~-----------~~~~~~~-----~~~l~i~~~~~~~~  138 (232)
                      .|+++.|.|.....+      ...+.|++....       +..           ..+....     ..+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            478999999876542      346999986411       000           1122211     23799999999999


Q ss_pred             eEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        139 GAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       139 g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      |.|.|.+.+..+. ....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~-~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLED-ESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccc-eEEEEEEEEE
Confidence            9999999887655 4556666654

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.36  E-value=2.7e-06  Score=52.16  Aligned_cols=74  Identities=22%  Similarity=0.352  Sum_probs=50.5

Q ss_pred             cCCcEEEEeeecc-CCCCeEEEEeCCeeeCC-------C----------CcEEe--eCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         88 EGQSVQLECHAEG-HPIPTISWRRENNAILP-------N----------GQTIF--TGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        88 ~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~-------~----------~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .|+++.|.|.... .....+.|++....+..       .          .+...  .+.+|.|.+++.+|+|.|.|.+..
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            6899999998754 34456999986432210       0          01111  135899999999999999999998


Q ss_pred             CCCCceeeEEEEEE
Q psy15206        148 GIGRGARRKIEVKV  161 (232)
Q Consensus       148 ~~~~~~~~~~~l~v  161 (232)
                      ..+......+.|.|
T Consensus        83 ~~~~~~~~~f~L~v   96 (97)
T cd05775          83 KNGVTITKEFTLHI   96 (97)
T ss_pred             CCCCeEEEEEEEEe
Confidence            76665556665554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.36  E-value=1.6e-05  Score=50.30  Aligned_cols=68  Identities=15%  Similarity=0.264  Sum_probs=45.7

Q ss_pred             CceEeecCCcEEEEeeeccCC----CCeEEEEe---------------CCeeeCC-C----CcEE------eeCCeEEEC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP----IPTISWRR---------------ENNAILP-N----GQTI------FTGSTLQIP  131 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~---------------~~~~~~~-~----~~~~------~~~~~l~i~  131 (232)
                      ....+..|+.+.|.|......    ...+.|..               +|..... .    ++..      ..+.+|.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            345666899999999986532    34699933               2322210 0    1211      123589999


Q ss_pred             CCCCCCCeEEEEEeEeCC
Q psy15206        132 RITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       132 ~~~~~~~g~y~C~~~~~~  149 (232)
                      +++.+|.|.|+|.+.+..
T Consensus        86 nv~~sD~G~Y~C~v~n~p  103 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPP  103 (116)
T ss_pred             cCCcccCEEEEEEEEcCC
Confidence            999999999999999854

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.34  E-value=4.4e-06  Score=50.99  Aligned_cols=66  Identities=14%  Similarity=0.269  Sum_probs=43.9

Q ss_pred             EEEeccceeeeeccCeEEEEEEeec-CCCCe--EEEeeCCEEecCCC-----------eEEEEEeccccCCce-EEEEec
Q psy15206        166 IVTVQSTRIGQALHHDMDLDCHIEA-YPHPI--LYWAKDGEIVVNDE-----------YHSISNFGTSEGTTG-SLQCKV  230 (232)
Q Consensus       166 ~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--~~W~~~g~~~~~~~-----------~~~~~~~~~~~~d~g-~Y~C~~  230 (232)
                      .+.+.+.+..+.+|+.++|+|.+.| .|.+.  +.|+|++..+....           ...+... .+.+|.| .|+|+|
T Consensus         3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A   81 (100)
T cd05755           3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCET   81 (100)
T ss_pred             eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEE
Confidence            3445555556789999999999865 66665  79999988775321           1223322 3345556 999998


Q ss_pred             CC
Q psy15206        231 PV  232 (232)
Q Consensus       231 ~~  232 (232)
                      .+
T Consensus        82 ~l   83 (100)
T cd05755          82 EL   83 (100)
T ss_pred             Ee
Confidence            53

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.34  E-value=4e-06  Score=52.39  Aligned_cols=63  Identities=6%  Similarity=0.189  Sum_probs=45.6

Q ss_pred             eccceeeeeccCeEEEEEEeecCC-CCeEEEeeCC--E---Eec------------------CCCeEEEEEeccccCCce
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYP-HPILYWAKDG--E---IVV------------------NDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~g--~---~~~------------------~~~~~~~~~~~~~~~d~g  224 (232)
                      ..|....+..|++++|.|.+.+.. ...+.|+|..  .   .+.                  ....+.|.+.++..+|+|
T Consensus         5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg   84 (106)
T cd04980           5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAA   84 (106)
T ss_pred             ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCE
Confidence            345566788999999999987665 4579999742  1   110                  123467888889999999


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      .|.|.+.
T Consensus        85 ~Y~Ca~~   91 (106)
T cd04980          85 VYYCQQY   91 (106)
T ss_pred             EEEEEEe
Confidence            9999863

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.34  E-value=1.4e-05  Score=46.84  Aligned_cols=63  Identities=17%  Similarity=0.344  Sum_probs=47.0

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      ..+..|++++|.|.+...+.  +.++|...+.....  .......+|.+..+...|+|.++|.+...
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~--~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ--ILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce--eccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            35668999999999865444  48999987655321  11224568999999999999999999754

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.33  E-value=5.3e-06  Score=52.20  Aligned_cols=68  Identities=29%  Similarity=0.530  Sum_probs=48.8

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--eeC----------------CCCcEEe-----eCCeEEECCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AIL----------------PNGQTIF-----TGSTLQIPRITKE  136 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~~----------------~~~~~~~-----~~~~l~i~~~~~~  136 (232)
                      .+....+.+|+++.|.|...+ +...+.||+...  .+.                ...++..     ....|.|.+++.+
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~   82 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE   82 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence            455677889999999999877 667799998642  110                0112211     1347999999999


Q ss_pred             CCeEEEEEeEeC
Q psy15206        137 DRGAYYCVAQNG  148 (232)
Q Consensus       137 ~~g~y~C~~~~~  148 (232)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~Ca~~~~   94 (110)
T cd05899          83 DSAVYLCASSLG   94 (110)
T ss_pred             hCEEEEEEeeCC
Confidence            999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.33  E-value=2.2e-06  Score=53.44  Aligned_cols=57  Identities=9%  Similarity=0.294  Sum_probs=43.1

Q ss_pred             eeeccCeEEEEEEeecC-CCCeEEEeeCCE-----Eec-----------------------CCCeEEEEEeccccCCceE
Q psy15206        175 GQALHHDMDLDCHIEAY-PHPILYWAKDGE-----IVV-----------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~-p~~~~~W~~~g~-----~~~-----------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      .+..|++++|.|...+. +...+.|+|...     .+.                       ....+.|.+.++..+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            45689999999998876 566799998432     010                       1146788888999999999


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |.|.+.
T Consensus        82 Y~C~v~   87 (105)
T cd00099          82 YYCAVS   87 (105)
T ss_pred             EEEEEe
Confidence            999975

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.33  E-value=6.3e-06  Score=51.49  Aligned_cols=68  Identities=25%  Similarity=0.462  Sum_probs=47.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCC-CCeEEEEeCCe--e---eC---------CCCcEEee----CCeEEECCCCCCCCeE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENN--A---IL---------PNGQTIFT----GSTLQIPRITKEDRGA  140 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~--~---~~---------~~~~~~~~----~~~l~i~~~~~~~~g~  140 (232)
                      .+....+.+|+++.|.|.+.+.. ...+.|++...  .   +.         ...++...    ...|.|.++..+|+|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~   85 (106)
T cd04980           6 SPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAV   85 (106)
T ss_pred             CCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEE
Confidence            45566788999999999987654 45799997531  1   00         00122211    1369999999999999


Q ss_pred             EEEEeEe
Q psy15206        141 YYCVAQN  147 (232)
Q Consensus       141 y~C~~~~  147 (232)
                      |.|.+.+
T Consensus        86 Y~Ca~~~   92 (106)
T cd04980          86 YYCQQYG   92 (106)
T ss_pred             EEEEEeC
Confidence            9999864

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.32  E-value=1.3e-05  Score=50.28  Aligned_cols=75  Identities=27%  Similarity=0.505  Sum_probs=49.4

Q ss_pred             cCCcEEEEeeeccCC----------CCeEEEEeCC--eee--C------------CCCcEEe-------eCCeEEECCCC
Q psy15206         88 EGQSVQLECHAEGHP----------IPTISWRREN--NAI--L------------PNGQTIF-------TGSTLQIPRIT  134 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~----------~~~~~W~~~~--~~~--~------------~~~~~~~-------~~~~l~i~~~~  134 (232)
                      .|+++.|.|.....+          ...+.|++..  ...  .            ..++...       ...+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            378999999986533          2469999852  110  0            0112221       12479999999


Q ss_pred             CCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206        135 KEDRGAYYCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      .+|.|.|.|.+...... ..+.+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~-~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIED-EQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence            99999999999985433 55666776653

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.30  E-value=1.5e-05  Score=48.93  Aligned_cols=71  Identities=28%  Similarity=0.540  Sum_probs=46.0

Q ss_pred             CcEEEEeeeccCC---CCeEEEEeCCee----e-----------CC--CCcEEe-----eCCeEEECCCCCCCCeEEEEE
Q psy15206         90 QSVQLECHAEGHP---IPTISWRRENNA----I-----------LP--NGQTIF-----TGSTLQIPRITKEDRGAYYCV  144 (232)
Q Consensus        90 ~~~~l~C~~~~~~---~~~~~W~~~~~~----~-----------~~--~~~~~~-----~~~~l~i~~~~~~~~g~y~C~  144 (232)
                      +++.|.|......   ...+.|++....    +           ..  ..+...     ...+|.|.+++.+|.|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999986543   336999986531    0           00  011111     235899999999999999999


Q ss_pred             eEe-CCCCceeeEEEEEE
Q psy15206        145 AQN-GIGRGARRKIEVKV  161 (232)
Q Consensus       145 ~~~-~~~~~~~~~~~l~v  161 (232)
                      +.. ..|. ..+.+.|.|
T Consensus        81 v~~~~~g~-~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGN-RQKVTTLTV   97 (98)
T ss_pred             EEeCCCCc-EEEEEEEEe
Confidence            876 4444 555555554

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.30  E-value=4e-06  Score=52.28  Aligned_cols=65  Identities=29%  Similarity=0.489  Sum_probs=45.8

Q ss_pred             EeecCCcEEEEeeeccC-CCCeEEEEeCCee-----eC------------CCCcEEe------eCCeEEECCCCCCCCeE
Q psy15206         85 VAKEGQSVQLECHAEGH-PIPTISWRRENNA-----IL------------PNGQTIF------TGSTLQIPRITKEDRGA  140 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~-----~~------------~~~~~~~------~~~~l~i~~~~~~~~g~  140 (232)
                      .+.+|+++.|.|..... ....+.|++....     +.            ...+...      ...+|.|.+++.+|.|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            45689999999998765 5567999985431     00            0111111      12379999999999999


Q ss_pred             EEEEeEeCC
Q psy15206        141 YYCVAQNGI  149 (232)
Q Consensus       141 y~C~~~~~~  149 (232)
                      |.|.+.+..
T Consensus        82 Y~C~v~~~~   90 (105)
T cd00099          82 YYCAVSLSG   90 (105)
T ss_pred             EEEEEecCC
Confidence            999998754

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.30  E-value=2.3e-06  Score=52.34  Aligned_cols=55  Identities=18%  Similarity=0.350  Sum_probs=37.9

Q ss_pred             eccCeEEEEEEeecC-CC-CeEEEeeCCEEecCCC-----------eEEE----EEeccccCCceEEEEecC
Q psy15206        177 ALHHDMDLDCHIEAY-PH-PILYWAKDGEIVVNDE-----------YHSI----SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~-p~-~~~~W~~~g~~~~~~~-----------~~~~----~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..|+.+.|.|.+.|+ |. ..+.|+++|..+....           .|..    .+......+.|.|+|+|.
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~   82 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVT   82 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEE
Confidence            468899999999998 53 4799999987764322           2222    222222358999999874

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.28  E-value=2.1e-05  Score=52.87  Aligned_cols=82  Identities=18%  Similarity=0.371  Sum_probs=58.1

Q ss_pred             ceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeC----------C--CCcEEe-----eCCeEEECCCCCCCCeEEEEE
Q psy15206         83 LSVAKEGQSVQLECHAE-GHPIPTISWRRENNAIL----------P--NGQTIF-----TGSTLQIPRITKEDRGAYYCV  144 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~----------~--~~~~~~-----~~~~l~i~~~~~~~~g~y~C~  144 (232)
                      ...+.+|+++.|.|... +...+.+.|++..+.+.          .  ..+...     ....|.|.+++.+|.|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            35678899999999974 55567799998643221          0  112222     356899999999999999999


Q ss_pred             eEe-CCCCceeeEEEEEEEec
Q psy15206        145 AQN-GIGRGARRKIEVKVEFA  164 (232)
Q Consensus       145 ~~~-~~~~~~~~~~~l~v~~~  164 (232)
                      +.. ..|...+....|.|...
T Consensus       104 F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEecCCCCCceeEEEEEEEch
Confidence            876 44534667778877643

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.28  E-value=1.9e-06  Score=52.33  Aligned_cols=53  Identities=9%  Similarity=0.034  Sum_probs=38.8

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeCCEEe-----c-------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKDGEIV-----V-------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~g~~~-----~-------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |++|+|.|.........+.|+++....     .                   -.....|.+.+.+.+|+|.|.|.+.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~   77 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQII   77 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEE
Confidence            688999998876555679998864211     0                   0122578888899999999999874

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.27  E-value=5.7e-06  Score=52.61  Aligned_cols=61  Identities=8%  Similarity=0.299  Sum_probs=45.0

Q ss_pred             cceeeeeccCeEEEEEEeec--CCCCeEEEeeC--CEE----e---------------------c-CC--CeEEEEEecc
Q psy15206        171 STRIGQALHHDMDLDCHIEA--YPHPILYWAKD--GEI----V---------------------V-ND--EYHSISNFGT  218 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~--~p~~~~~W~~~--g~~----~---------------------~-~~--~~~~~~~~~~  218 (232)
                      |....+..|++++|.|...+  .+.+.+.|+|.  |..    +                     . ..  ..+.|.+.++
T Consensus         5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   84 (116)
T cd04982           5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL   84 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence            44556778999999999877  56678999984  210    0                     0 11  4567788888


Q ss_pred             ccCCceEEEEecC
Q psy15206        219 SEGTTGSLQCKVP  231 (232)
Q Consensus       219 ~~~d~g~Y~C~~~  231 (232)
                      +.+|+|.|.|.+.
T Consensus        85 ~~~Dsg~Y~C~~~   97 (116)
T cd04982          85 EKEDSATYYCAYW   97 (116)
T ss_pred             CHHHCEEEEEEEe
Confidence            8899999999874

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.26  E-value=1.9e-05  Score=48.72  Aligned_cols=72  Identities=25%  Similarity=0.407  Sum_probs=45.1

Q ss_pred             CCcEEEEeeeccCC---CCeEEEEeCCeee-----------C------CCCcEEe-------eCCeEEECCCCCCCCeEE
Q psy15206         89 GQSVQLECHAEGHP---IPTISWRRENNAI-----------L------PNGQTIF-------TGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        89 g~~~~l~C~~~~~~---~~~~~W~~~~~~~-----------~------~~~~~~~-------~~~~l~i~~~~~~~~g~y  141 (232)
                      |+++.|.|......   ...+.|++.....           .      ...+...       ...+|.|.+++.+|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            67889999875321   2357787754210           0      0012111       124799999999999999


Q ss_pred             EEEeEeCCCCceeeEEEEEE
Q psy15206        142 YCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus       142 ~C~~~~~~~~~~~~~~~l~v  161 (232)
                      +|.+.+..+. ....+.|.|
T Consensus        81 ~C~v~~~~~~-~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFY-EEATVELKV   99 (100)
T ss_pred             EEEEecCCcE-EEEEEEEEE
Confidence            9999976554 555555544

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.24  E-value=2e-05  Score=49.98  Aligned_cols=70  Identities=21%  Similarity=0.501  Sum_probs=45.8

Q ss_pred             CCceEeecCCcEEEEeeeccCC----CCeEEEEeC----Cee--eC---------CCCc----EEe------eCCeEEEC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP----IPTISWRRE----NNA--IL---------PNGQ----TIF------TGSTLQIP  131 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~----~~~--~~---------~~~~----~~~------~~~~l~i~  131 (232)
                      +..+.+..|+++.|.|.....+    ...+.|++.    +..  +.         ...+    ...      .+.+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4456777899999999975432    235999742    111  10         0101    111      13479999


Q ss_pred             CCCCCCCeEEEEEeEeCCC
Q psy15206        132 RITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       132 ~~~~~~~g~y~C~~~~~~~  150 (232)
                      +++.+|.|.|.|.+.+...
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999997543

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.20  E-value=1.4e-05  Score=48.43  Aligned_cols=54  Identities=20%  Similarity=0.322  Sum_probs=35.7

Q ss_pred             ccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEEEE-EeccccCCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHSIS-NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~~~-~~~~~~~d~g~Y~C~~~  231 (232)
                      .++..+|.|.+.|+.+.  .+.|.+||..+..           +..|.+. .......+...|+|.|.
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~   81 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVE   81 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEE
Confidence            45668999999997554  5899999987642           2333322 22233355668999874

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.19  E-value=1.5e-05  Score=50.38  Aligned_cols=61  Identities=16%  Similarity=0.301  Sum_probs=42.7

Q ss_pred             cceeeeeccCeEEEEEEeecCC----CCeEEEe---------------eCCEEec----------------CCCeEEEEE
Q psy15206        171 STRIGQALHHDMDLDCHIEAYP----HPILYWA---------------KDGEIVV----------------NDEYHSISN  215 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p----~~~~~W~---------------~~g~~~~----------------~~~~~~~~~  215 (232)
                      +..+.+..|+++.|.|......    ...+.|.               ++|....                ......|.+
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            4455678899999999976542    3479993               2333321                123457888


Q ss_pred             eccccCCceEEEEecC
Q psy15206        216 FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       216 ~~~~~~d~g~Y~C~~~  231 (232)
                      .+++.+|.|+|+|.+.
T Consensus        85 ~nv~~sD~G~Y~C~v~  100 (116)
T cd05879          85 HNLDYTDNGTFTCDVK  100 (116)
T ss_pred             ccCCcccCEEEEEEEE
Confidence            8899999999999874

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.18  E-value=1.9e-05  Score=48.03  Aligned_cols=55  Identities=24%  Similarity=0.377  Sum_probs=36.8

Q ss_pred             eccCeEEEEEEeecCCCC--eEEEeeCCEEecCC-----------CeEEEE-EeccccCCceEEEEecC
Q psy15206        177 ALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVND-----------EYHSIS-NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~-----------~~~~~~-~~~~~~~d~g~Y~C~~~  231 (232)
                      ..|+.++|.|.+.|+.++  .+.|++||..+..+           ..|.+. .......+...|+|+|.
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~   80 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVE   80 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEE
Confidence            357889999999996555  58999999876432           123322 22333355668999874

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.17  E-value=4e-05  Score=45.42  Aligned_cols=59  Identities=17%  Similarity=0.412  Sum_probs=39.5

Q ss_pred             EEEEeeecc-CCCCeEEEEeCCeeeCCCCcE---------EeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         92 VQLECHAEG-HPIPTISWRRENNAILPNGQT---------IFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      +.|.|.+.+ +|...|.|+++|..+......         ....+.|.+.....++...|.|.+.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            679999987 577889999999876432211         11123444544555666799999998653

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.16  E-value=5e-05  Score=48.24  Aligned_cols=70  Identities=21%  Similarity=0.451  Sum_probs=46.0

Q ss_pred             CCceEeecCCcEEEEeeeccCC----CCeEEEEeCCe------eeC----------CCCcE----Ee------eCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP----IPTISWRRENN------AIL----------PNGQT----IF------TGSTLQI  130 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~~~------~~~----------~~~~~----~~------~~~~l~i  130 (232)
                      +....+..|+++.|.|......    ...+.|++...      .+.          ...++    ..      .+.+|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4556777999999999875432    24599976321      000          01111    11      1247999


Q ss_pred             CCCCCCCCeEEEEEeEeCCC
Q psy15206        131 PRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       131 ~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .+++.+|.|.|.|.+.+...
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCC
Confidence            99999999999999997543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.15  E-value=1.4e-05  Score=50.88  Aligned_cols=68  Identities=28%  Similarity=0.494  Sum_probs=47.7

Q ss_pred             CCCceEeecCCcEEEEeeecc--CCCCeEEEEeCC--eee------C-----------CCCcEEe------eCCeEEECC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEG--HPIPTISWRREN--NAI------L-----------PNGQTIF------TGSTLQIPR  132 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~--~~~------~-----------~~~~~~~------~~~~l~i~~  132 (232)
                      .+....+.+|+++.|.|...+  .+.+.+.|++..  ..+      .           ...++..      ....|.|.+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            345567778999999999876  566789999852  111      0           0122221      123699999


Q ss_pred             CCCCCCeEEEEEeEe
Q psy15206        133 ITKEDRGAYYCVAQN  147 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~  147 (232)
                      ++.+|+|.|.|.+..
T Consensus        84 ~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          84 LEKEDSATYYCAYWE   98 (116)
T ss_pred             CCHHHCEEEEEEEec
Confidence            999999999999864

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.15  E-value=3.7e-05  Score=45.49  Aligned_cols=59  Identities=22%  Similarity=0.387  Sum_probs=39.5

Q ss_pred             EEEEeeecc-CCCCeEEEEeCCeeeCCCCc--------EEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         92 VQLECHAEG-HPIPTISWRRENNAILPNGQ--------TIFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      +.|.|.+.+ .|.+.+.|+++++.+.....        .....+.|.+.....++.+.|+|.+.+...
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l   69 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPAL   69 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhc
Confidence            679999977 57789999999987643211        111123455555555666799999998654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.15  E-value=5.8e-05  Score=47.43  Aligned_cols=37  Identities=24%  Similarity=0.553  Sum_probs=29.7

Q ss_pred             CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      +.+|.|.+++..|.|.|.|.+...... ....+.|.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence            358999999999999999999987654 5566666664

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.14  E-value=1.2e-05  Score=47.60  Aligned_cols=50  Identities=16%  Similarity=0.353  Sum_probs=32.4

Q ss_pred             EEEEEEeecC-CCCeEEEeeCCEEecCC---------CeEEEE----EeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAY-PHPILYWAKDGEIVVND---------EYHSIS----NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~-p~~~~~W~~~g~~~~~~---------~~~~~~----~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.+. |.+.+.|+++|..+...         ..|...    .......+.+.|+|+|.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~   65 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVD   65 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEe
Confidence            6899999665 88899999999876422         122221    11122245569999874

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.14  E-value=2.1e-05  Score=48.31  Aligned_cols=63  Identities=17%  Similarity=0.348  Sum_probs=43.3

Q ss_pred             EeecCCcEEEEeeeccC--CCCeEEEEeCCee--eC------------CCCcEEe----eCCeEEECCCCCCCCeEEEEE
Q psy15206         85 VAKEGQSVQLECHAEGH--PIPTISWRRENNA--IL------------PNGQTIF----TGSTLQIPRITKEDRGAYYCV  144 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~--~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~C~  144 (232)
                      .+.+|+++.|.|...+.  ....+.||+....  +.            ...++..    ....|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            35689999999998654  4456999985421  10            0112221    123699999999999999999


Q ss_pred             eEe
Q psy15206        145 AQN  147 (232)
Q Consensus       145 ~~~  147 (232)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            864

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.14  E-value=5e-05  Score=47.85  Aligned_cols=62  Identities=13%  Similarity=0.379  Sum_probs=45.8

Q ss_pred             ccceeeeeccCeEEEEEEee-cCCCCeEEEeeCCE-----Eec-------------------------CCCeEEEEEecc
Q psy15206        170 QSTRIGQALHHDMDLDCHIE-AYPHPILYWAKDGE-----IVV-------------------------NDEYHSISNFGT  218 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~g~-----~~~-------------------------~~~~~~~~~~~~  218 (232)
                      .+..+.+..|+++.|.|... ......+.|++...     .+.                         ....+.|.+.++
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l   86 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL   86 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence            45667788999999999998 44455799998321     110                         123567888899


Q ss_pred             ccCCceEEEEecC
Q psy15206        219 SEGTTGSLQCKVP  231 (232)
Q Consensus       219 ~~~d~g~Y~C~~~  231 (232)
                      +.+|+|.|.|.+.
T Consensus        87 ~~~DsG~Y~C~v~   99 (114)
T PF07686_consen   87 QPSDSGTYFCQVS   99 (114)
T ss_dssp             SGGGEEEEEEEEE
T ss_pred             CcCcCEEEEEEEE
Confidence            9999999999874

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.13  E-value=2.7e-05  Score=47.03  Aligned_cols=55  Identities=15%  Similarity=0.227  Sum_probs=37.1

Q ss_pred             eccCeEEEEEEeecCCCC--eEEEeeCCEEec----------CCCeEEE-EEeccccCCceEEEEecC
Q psy15206        177 ALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV----------NDEYHSI-SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~----------~~~~~~~-~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..|+..+|.|.+.|+.++  .+.|+|||..+.          .+..|.+ ........+...|.|+|.
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~   80 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVR   80 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEE
Confidence            346677999999997655  589999998754          2233433 222344466778999874

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.13  E-value=9.5e-05  Score=44.96  Aligned_cols=71  Identities=23%  Similarity=0.479  Sum_probs=44.3

Q ss_pred             CcEEEEeeeccCCC-CeEEEEeCCe----eeC--C-----------CCcEEe-----eCCeEEECCCCCCCCeEEEEEeE
Q psy15206         90 QSVQLECHAEGHPI-PTISWRRENN----AIL--P-----------NGQTIF-----TGSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        90 ~~~~l~C~~~~~~~-~~~~W~~~~~----~~~--~-----------~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      +++.|.|....... ..+.|.+...    .+.  .           ..+...     .+.+|.|.+++.+|.|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            36788998764332 3588977421    110  0           011111     24689999999999999999987


Q ss_pred             e-CCCCceeeEEEEEE
Q psy15206        147 N-GIGRGARRKIEVKV  161 (232)
Q Consensus       147 ~-~~~~~~~~~~~l~v  161 (232)
                      . ..|. ......|.|
T Consensus        81 tfP~G~-~~~~~~l~~   95 (96)
T cd05887          81 TFPLGN-TQSSTTVTV   95 (96)
T ss_pred             eCCCCC-eeEEEEEEE
Confidence            6 4555 445555544

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.12  E-value=3.8e-05  Score=48.04  Aligned_cols=36  Identities=25%  Similarity=0.533  Sum_probs=28.8

Q ss_pred             CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       126 ~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      .+|.|.+++.+|.|.|.|.+...... ....+.|.|.
T Consensus        72 asL~i~nv~~~D~G~Y~C~v~~g~~~-~~~~v~L~V~  107 (110)
T cd05902          72 ASLVLSRLRYSDSGTYRCEVVLGIND-EQDTVPLEVT  107 (110)
T ss_pred             EEEEECCCCHHHCEEEEEEEEECCcc-cEEEEEEEEE
Confidence            48999999999999999999985433 5566677664

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.12  E-value=4e-05  Score=46.97  Aligned_cols=72  Identities=21%  Similarity=0.372  Sum_probs=46.0

Q ss_pred             CCcEEEEeeeccCCC-CeEEEEeCCee----e---CC----------CCcEEe-----eCCeEEECCCCCCCCeEEEEEe
Q psy15206         89 GQSVQLECHAEGHPI-PTISWRRENNA----I---LP----------NGQTIF-----TGSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        89 g~~~~l~C~~~~~~~-~~~~W~~~~~~----~---~~----------~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      |++++|.|....... ..+.|++....    +   ..          ..+...     ...+|.|.+++.+|.|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            678999998654332 25999885321    0   00          001111     2357999999999999999998


Q ss_pred             EeC-CCCceeeEEEEEE
Q psy15206        146 QNG-IGRGARRKIEVKV  161 (232)
Q Consensus       146 ~~~-~~~~~~~~~~l~v  161 (232)
                      ... .|. ....+.|.|
T Consensus        81 ~~~p~g~-~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGS-KSGTMCLTV   96 (97)
T ss_pred             EeCCCCC-eeeEEEEEE
Confidence            864 444 555666655

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.12  E-value=2.9e-05  Score=47.43  Aligned_cols=68  Identities=16%  Similarity=0.281  Sum_probs=44.7

Q ss_pred             eEeecCCcEEEEeeecc-CCCCe--EEEEeCCeeeCCCCcE------EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         84 SVAKEGQSVQLECHAEG-HPIPT--ISWRRENNAILPNGQT------IFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~-~~~~~--~~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ..+.+|+.+.|.|.+.| .|...  +.||+++..+......      .....++.+..-..+|...|+|.+......
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            34568999999999987 56665  7999998877432111      112235665544444444999999976543

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.10  E-value=7.9e-06  Score=50.63  Aligned_cols=62  Identities=13%  Similarity=0.007  Sum_probs=41.5

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCE-----Eec--------------CCCe------EEEEEeccccCCce
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE-----IVV--------------NDEY------HSISNFGTSEGTTG  224 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~-----~~~--------------~~~~------~~~~~~~~~~~d~g  224 (232)
                      .+.+..+..|+++.|.|.........+.|+|+..     .+.              ..++      -.|.+.+++.+|+|
T Consensus         4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G   83 (105)
T cd05774           4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG   83 (105)
T ss_pred             eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence            3444567789999999975433334799999621     110              0112      25677788999999


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      .|+|.+.
T Consensus        84 ~Y~~~v~   90 (105)
T cd05774          84 FYTLQTI   90 (105)
T ss_pred             EEEEEEE
Confidence            9999874

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.10  E-value=1.2e-05  Score=49.09  Aligned_cols=63  Identities=25%  Similarity=0.399  Sum_probs=44.8

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc-E---------EeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ-T---------IFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~-~---------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .|+.+.|.|.+.|. |. ..+.|+++|..+..... .         ....+.|.+......+.+.|+|.+.+...
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            57899999999996 53 57999999987643321 0         11123466666666789999999998643

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.09  E-value=1.9e-05  Score=49.52  Aligned_cols=54  Identities=13%  Similarity=0.265  Sum_probs=37.3

Q ss_pred             ccCeEEEEEEeecCC------------CCeEEEeeC--CE---Ee-------------------c----CCCeEEEEEec
Q psy15206        178 LHHDMDLDCHIEAYP------------HPILYWAKD--GE---IV-------------------V----NDEYHSISNFG  217 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p------------~~~~~W~~~--g~---~~-------------------~----~~~~~~~~~~~  217 (232)
                      .|++++|.|......            .+.|.|+|.  |.   .+                   .    ....+.|.+.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            378899999875432            347999874  10   00                   0    11456777888


Q ss_pred             cccCCceEEEEecC
Q psy15206        218 TSEGTTGSLQCKVP  231 (232)
Q Consensus       218 ~~~~d~g~Y~C~~~  231 (232)
                      .+.+|+|.|+|.+.
T Consensus        81 l~~sDsG~Y~C~V~   94 (112)
T cd05900          81 LRSNDSGTYRCEVM   94 (112)
T ss_pred             cccccCEEEEEEEe
Confidence            88999999999974

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=98.09  E-value=1e-05  Score=44.54  Aligned_cols=49  Identities=12%  Similarity=0.299  Sum_probs=35.0

Q ss_pred             eccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEec
Q psy15206        177 ALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      ..|.+|+|+|...+.   .+.|.+|+..+..+....+..+- . ++.|.|.|.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~~~~~~~~~-~-e~~G~Y~C~~   53 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSDEKYLSLNH-F-SSSGYYHCTA   53 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCCceEEeecc-C-CCCceEEEEe
Confidence            478999999986533   39999999766654444433332 3 8899999976

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.09  E-value=3e-05  Score=49.28  Aligned_cols=62  Identities=11%  Similarity=0.280  Sum_probs=43.7

Q ss_pred             ccceeeeeccCeEEEEEEeecC-CCCeEEEeeC--CEE---e-----------------c---CCCeEEEEEeccccCCc
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAY-PHPILYWAKD--GEI---V-----------------V---NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~--g~~---~-----------------~---~~~~~~~~~~~~~~~d~  223 (232)
                      .+..+.+..|++++|.|..... ....+.|+|.  +..   +                 .   ....+.|.+.++..+|+
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   84 (116)
T cd07706           5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS   84 (116)
T ss_pred             eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence            3455677899999999997654 3456999973  111   1                 0   12346677778888999


Q ss_pred             eEEEEecC
Q psy15206        224 GSLQCKVP  231 (232)
Q Consensus       224 g~Y~C~~~  231 (232)
                      |.|.|.+.
T Consensus        85 g~Y~C~~~   92 (116)
T cd07706          85 AKYFCALS   92 (116)
T ss_pred             EEEEEEEE
Confidence            99999874

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.08  E-value=3.5e-05  Score=48.61  Aligned_cols=68  Identities=25%  Similarity=0.530  Sum_probs=47.1

Q ss_pred             CCceEeecCCcEEEEeeec-cCCCCeEEEEeCCe-----eeC---C-----------CCcEE-e-e----CCeEEECCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAE-GHPIPTISWRRENN-----AIL---P-----------NGQTI-F-T----GSTLQIPRIT  134 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~-----~~~---~-----------~~~~~-~-~----~~~l~i~~~~  134 (232)
                      +....+.+|+++.|.|... ......+.|++...     .+.   .           ..+.. . .    ..+|.|.+++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~   87 (114)
T PF07686_consen    8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ   87 (114)
T ss_dssp             ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred             CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence            4456777999999999987 44555799998432     111   0           00111 1 1    1269999999


Q ss_pred             CCCCeEEEEEeEeC
Q psy15206        135 KEDRGAYYCVAQNG  148 (232)
Q Consensus       135 ~~~~g~y~C~~~~~  148 (232)
                      .+|+|.|.|.+...
T Consensus        88 ~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   88 PSDSGTYFCQVSTS  101 (114)
T ss_dssp             GGGEEEEEEEEEES
T ss_pred             cCcCEEEEEEEEEC
Confidence            99999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.08  E-value=1.2e-05  Score=49.39  Aligned_cols=57  Identities=11%  Similarity=0.218  Sum_probs=40.7

Q ss_pred             eeeccCeEEEEEEeecC--CCCeEEEeeCCE--E---ec------------------CCCeEEEEEeccccCCceEEEEe
Q psy15206        175 GQALHHDMDLDCHIEAY--PHPILYWAKDGE--I---VV------------------NDEYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~--p~~~~~W~~~g~--~---~~------------------~~~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      .+..|++++|.|...+.  ....+.|+|...  .   +.                  ....+.|.+.++..+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            35689999999998664  445699987421  1   10                  11345678888889999999998


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      +.
T Consensus        82 ~~   83 (98)
T cd04984          82 VW   83 (98)
T ss_pred             Ec
Confidence            64

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.06  E-value=1.8e-05  Score=53.21  Aligned_cols=59  Identities=15%  Similarity=0.349  Sum_probs=43.0

Q ss_pred             eeeeeccCeEEEEEEee-cCCCCeEEEeeCCEEec----------C------------CCeEEEEEeccccCCceEEEEe
Q psy15206        173 RIGQALHHDMDLDCHIE-AYPHPILYWAKDGEIVV----------N------------DEYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~g~~~~----------~------------~~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      ...+.+|++++|.|... +...+.+.|+|.+..+.          .            .....|.+.+++.+|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            34678899999999974 65677899999743221          0            1223567788999999999998


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      +.
T Consensus       104 F~  105 (189)
T PHA02987        104 FN  105 (189)
T ss_pred             EE
Confidence            64

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.04  E-value=9.3e-05  Score=46.40  Aligned_cols=64  Identities=30%  Similarity=0.465  Sum_probs=39.6

Q ss_pred             EeecCCcEEEEeeecc-CCC-CeEEEEeCCeeeCCCCcE---------EeeCCeEEECCCCCCCCe-EEEEEeEeCC
Q psy15206         85 VAKEGQSVQLECHAEG-HPI-PTISWRRENNAILPNGQT---------IFTGSTLQIPRITKEDRG-AYYCVAQNGI  149 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~-~~~-~~~~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~~~g-~y~C~~~~~~  149 (232)
                      ....|+.+.|.|.+.| +|. ..++|+++|..+......         ....+.|.+.. ...|.+ .|.|.+.+..
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            3446788999999998 443 479999999886422111         11122344443 333333 5999999864

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.04  E-value=3.4e-05  Score=45.70  Aligned_cols=50  Identities=16%  Similarity=0.329  Sum_probs=32.0

Q ss_pred             EEEEEEeec-CCCCeEEEeeCCEEecCC----------CeEE----EEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEA-YPHPILYWAKDGEIVVND----------EYHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~-~p~~~~~W~~~g~~~~~~----------~~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++|.|.+.| +|...+.|+|||..+...          ..|.    +........+...|+|+|.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~   66 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVD   66 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEe
Confidence            589999977 566689999999876421          1222    1112222345668999984

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.04  E-value=1.1e-05  Score=49.45  Aligned_cols=54  Identities=13%  Similarity=0.195  Sum_probs=38.1

Q ss_pred             ccCeEEEEEEeec-CCCCeEEEeeCCEEec------------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEA-YPHPILYWAKDGEIVV------------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~------------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|++|+|.|.... .....+.|++++..+.                        ....+.|.+.+++.+|+|.|.|.+.
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            6889999998754 3344689987542110                        1224678888889999999999874

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.02  E-value=9.9e-05  Score=43.70  Aligned_cols=58  Identities=24%  Similarity=0.391  Sum_probs=39.6

Q ss_pred             EEEEeeecc-CCCCeEEEEeCCeeeCCCCcE---------EeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         92 VQLECHAEG-HPIPTISWRRENNAILPNGQT---------IFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        92 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +.|.|.+.| +|...+.|+++|..+......         ....+.|.+..-..++...|+|.+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            679999988 666789999999886432211         1122356665555666679999999864

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.02  E-value=2.8e-05  Score=48.74  Aligned_cols=32  Identities=13%  Similarity=0.421  Sum_probs=25.4

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      ....|+.++|.|.+.|+.++  .+.|+|||..+.
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~   50 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS   50 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc
Confidence            34568889999999886553  799999998764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.02  E-value=3.5e-05  Score=45.68  Aligned_cols=50  Identities=20%  Similarity=0.371  Sum_probs=33.1

Q ss_pred             EEEEEEeecC-CCCeEEEeeCCEEecCC----------CeEEEEE----eccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAY-PHPILYWAKDGEIVVND----------EYHSISN----FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~-p~~~~~W~~~g~~~~~~----------~~~~~~~----~~~~~~d~g~Y~C~~~  231 (232)
                      +.|+|.+.|+ |.+.|.|+++|..+...          ..|....    ......+...|+|.|.
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~   66 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVG   66 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEE
Confidence            6899999775 88899999999875431          1332211    1222356679999974

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.01  E-value=5.6e-05  Score=47.88  Aligned_cols=61  Identities=20%  Similarity=0.340  Sum_probs=42.1

Q ss_pred             cceeeeeccCeEEEEEEeecCC----CCeEEEeeC----CEE--ec------------------------CCCeEEEEEe
Q psy15206        171 STRIGQALHHDMDLDCHIEAYP----HPILYWAKD----GEI--VV------------------------NDEYHSISNF  216 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~----g~~--~~------------------------~~~~~~~~~~  216 (232)
                      +..+.+..|+++.|.|.....+    ...+.|++.    +..  +.                        ......|.+.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4556788999999999975443    235999741    111  10                        0123468888


Q ss_pred             ccccCCceEEEEecC
Q psy15206        217 GTSEGTTGSLQCKVP  231 (232)
Q Consensus       217 ~~~~~d~g~Y~C~~~  231 (232)
                      +++.+|+|.|.|.+.
T Consensus        85 ~v~~~D~G~Y~C~v~   99 (115)
T cd05880          85 QLQPTDNGTYTCQVK   99 (115)
T ss_pred             eCChhhCEEEEEEEE
Confidence            899999999999875

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.00  E-value=3e-05  Score=48.38  Aligned_cols=54  Identities=24%  Similarity=0.385  Sum_probs=38.3

Q ss_pred             ccCeEEEEEEeecCC------CCeEEEeeCC-----E-Eec----------------------CCCeEEEEEeccccCCc
Q psy15206        178 LHHDMDLDCHIEAYP------HPILYWAKDG-----E-IVV----------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p------~~~~~W~~~g-----~-~~~----------------------~~~~~~~~~~~~~~~d~  223 (232)
                      .|++++|.|.....+      ...+.|+|..     . .+.                      ......|.+.+++..|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            378899999976543      4479999861     1 110                      12346777888888999


Q ss_pred             eEEEEecC
Q psy15206        224 GSLQCKVP  231 (232)
Q Consensus       224 g~Y~C~~~  231 (232)
                      |.|.|.+.
T Consensus        81 G~Y~C~v~   88 (106)
T cd05714          81 GRYRCEVI   88 (106)
T ss_pred             EEEEEEEE
Confidence            99999874

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.98  E-value=2.9e-05  Score=48.57  Aligned_cols=56  Identities=11%  Similarity=0.270  Sum_probs=38.9

Q ss_pred             eeeccCeEEEEEEeecCC-CCeEEEeeCCEE--------e---c----------------------CCCeEEEEEecccc
Q psy15206        175 GQALHHDMDLDCHIEAYP-HPILYWAKDGEI--------V---V----------------------NDEYHSISNFGTSE  220 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p-~~~~~W~~~g~~--------~---~----------------------~~~~~~~~~~~~~~  220 (232)
                      .+..|++++|.|...+.. ...+.|+|....        +   .                      ....+.|.+.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            356899999999986643 346999974210        0   0                      11234577778888


Q ss_pred             CCceEEEEec
Q psy15206        221 GTTGSLQCKV  230 (232)
Q Consensus       221 ~d~g~Y~C~~  230 (232)
                      +|+|.|.|..
T Consensus        82 ~Dsg~YyCa~   91 (107)
T cd07700          82 EDSGTYFCMT   91 (107)
T ss_pred             HHCEEEEEeE
Confidence            9999999985

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.97  E-value=3.4e-05  Score=48.47  Aligned_cols=54  Identities=22%  Similarity=0.339  Sum_probs=37.6

Q ss_pred             ccCeEEEEEEeecCC----------CCeEEEeeCC--EE---e---------c--------------CCCeEEEEEeccc
Q psy15206        178 LHHDMDLDCHIEAYP----------HPILYWAKDG--EI---V---------V--------------NDEYHSISNFGTS  219 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p----------~~~~~W~~~g--~~---~---------~--------------~~~~~~~~~~~~~  219 (232)
                      .|++++|.|.....+          ...+.|+|..  ..   +         .              ......|.+.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            378899999876543          2459998841  11   0         0              1234668888899


Q ss_pred             cCCceEEEEecC
Q psy15206        220 EGTTGSLQCKVP  231 (232)
Q Consensus       220 ~~d~g~Y~C~~~  231 (232)
                      ..|+|.|.|.+.
T Consensus        81 ~sD~G~Y~C~v~   92 (110)
T cd05878          81 SSDSGVYRCEVM   92 (110)
T ss_pred             hhhCEEEEEEEE
Confidence            999999999974

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.97  E-value=2.4e-05  Score=48.15  Aligned_cols=67  Identities=22%  Similarity=0.351  Sum_probs=40.2

Q ss_pred             cEEEecccee-eeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEEEEEe----ccccCCceEE
Q psy15206        165 PIVTVQSTRI-GQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHSISNF----GTSEGTTGSL  226 (232)
Q Consensus       165 p~~~~~~~~~-~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~~~~~----~~~~~d~g~Y  226 (232)
                      |.+.+.+... ....++.++|.|.+.|+.+.  .+.|++||..+..           ++.|.+...    .....+...|
T Consensus         2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~   81 (100)
T cd07699           2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY   81 (100)
T ss_pred             CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence            4444433322 33457789999999986543  5899999987641           233433222    1121345789


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      +|+|.
T Consensus        82 sC~V~   86 (100)
T cd07699          82 TCEVT   86 (100)
T ss_pred             EEEEE
Confidence            99873

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.97  E-value=2.7e-05  Score=47.87  Aligned_cols=57  Identities=18%  Similarity=0.297  Sum_probs=41.2

Q ss_pred             eeeccCeEEEEEEeec-CCCCeEEEeeCCE-----Ee----------------c---CCCeEEEEEeccccCCceEEEEe
Q psy15206        175 GQALHHDMDLDCHIEA-YPHPILYWAKDGE-----IV----------------V---NDEYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~-----~~----------------~---~~~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      .+..|++++|.|.... .....+.|+|...     .+                .   ....+.|.+.++..+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            4678999999998754 3345689998531     11                0   12346788888899999999998


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      +.
T Consensus        83 ~~   84 (98)
T cd05716          83 VG   84 (98)
T ss_pred             cc
Confidence            74

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.96  E-value=9.8e-05  Score=45.52  Aligned_cols=36  Identities=19%  Similarity=0.378  Sum_probs=28.1

Q ss_pred             CCeEEECCCCCCCCeEEEEEeEe-CCCCceeeEEEEEE
Q psy15206        125 GSTLQIPRITKEDRGAYYCVAQN-GIGRGARRKIEVKV  161 (232)
Q Consensus       125 ~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~~l~v  161 (232)
                      +.+|.|.+++.+|.|.|.|.+.+ ..|. ....+.|.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence            35899999999999999999987 4454 455566654

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.96  E-value=0.00037  Score=42.73  Aligned_cols=36  Identities=25%  Similarity=0.551  Sum_probs=29.4

Q ss_pred             CCeEEECCCCCCCCeEEEEEeEe-CCCCceeeEEEEEE
Q psy15206        125 GSTLQIPRITKEDRGAYYCVAQN-GIGRGARRKIEVKV  161 (232)
Q Consensus       125 ~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~~l~v  161 (232)
                      +.+|.|.+++..|.|.|.|.+.+ ..|. ....+.|.|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence            36899999999999999999998 4554 566667665

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.96  E-value=3.1e-05  Score=47.57  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=35.8

Q ss_pred             CeEEEEEEeecCC---CCeEEEeeCCE----Ee-----------cC------------CCeEEEEEeccccCCceEEEEe
Q psy15206        180 HDMDLDCHIEAYP---HPILYWAKDGE----IV-----------VN------------DEYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       180 ~~~~l~C~~~~~p---~~~~~W~~~g~----~~-----------~~------------~~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      ++++|.|.....+   ...+.|+|...    .+           ..            .....|.+.+++..|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4688999876654   33589988532    00           00            0346788888999999999998


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      +.
T Consensus        81 v~   82 (98)
T cd05718          81 FA   82 (98)
T ss_pred             EE
Confidence            63

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.94  E-value=4.2e-05  Score=44.91  Aligned_cols=58  Identities=16%  Similarity=0.271  Sum_probs=45.1

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeCCEE-e--cCCCeEEEEEeccccCCceEEEEecC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKDGEI-V--VNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~-~--~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+-.|++++|+|.+...+.|  .|.|+.-+.. .  ...+...+....+...|+|..+|.++
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~   71 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVS   71 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEE
Confidence            356789999999999664444  8999965432 2  34467788888899999999999985

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd00096 Ig Immunoglobulin domain

Probab=97.94  E-value=4e-05  Score=43.33  Aligned_cols=50  Identities=18%  Similarity=0.447  Sum_probs=38.0

Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEec-------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVV-------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~-------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.+.+...+.|++++....             ......+.+.+....|.|.|.|.+.
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~   63 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVAS   63 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEe
Confidence            4689999886777899999876543             2234567777777799999999874

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.94  E-value=6.3e-05  Score=47.80  Aligned_cols=61  Identities=16%  Similarity=0.248  Sum_probs=42.1

Q ss_pred             cceeeeeccCeEEEEEEeecCC----CCeEEEeeCCE------Ee---------c-C---------------CCeEEEEE
Q psy15206        171 STRIGQALHHDMDLDCHIEAYP----HPILYWAKDGE------IV---------V-N---------------DEYHSISN  215 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p----~~~~~W~~~g~------~~---------~-~---------------~~~~~~~~  215 (232)
                      |..+.+..|++++|.|......    ...+.|++...      .+         . .               ...+.|.+
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            5556788999999999875432    23599975210      11         0 0               11356788


Q ss_pred             eccccCCceEEEEecC
Q psy15206        216 FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       216 ~~~~~~d~g~Y~C~~~  231 (232)
                      .+++.+|+|.|.|.+.
T Consensus        85 ~~v~~~D~G~Y~C~v~  100 (116)
T cd05715          85 HNLQFTDNGTYTCDVK  100 (116)
T ss_pred             eeCCcccCEEEEEEEE
Confidence            8899999999999874

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.92  E-value=0.00015  Score=44.48  Aligned_cols=64  Identities=23%  Similarity=0.345  Sum_probs=44.3

Q ss_pred             EeecCCcEEEEeeecc-CCCCeEEEEeCCeee-------------CCCCcEEee------CCeEEECCCCCCCCeEEEEE
Q psy15206         85 VAKEGQSVQLECHAEG-HPIPTISWRRENNAI-------------LPNGQTIFT------GSTLQIPRITKEDRGAYYCV  144 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~-------------~~~~~~~~~------~~~l~i~~~~~~~~g~y~C~  144 (232)
                      .+.+|++++|.|.... .....+.|++.....             ....+....      ...|.|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            5668999999998765 345568999864211             011122221      13799999999999999999


Q ss_pred             eEeC
Q psy15206        145 AQNG  148 (232)
Q Consensus       145 ~~~~  148 (232)
                      +...
T Consensus        83 ~~~~   86 (98)
T cd05716          83 VGDD   86 (98)
T ss_pred             cccC
Confidence            8764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.90  E-value=5e-05  Score=46.84  Aligned_cols=22  Identities=9%  Similarity=0.153  Sum_probs=18.9

Q ss_pred             eEEEEEeccccCCceEEEEecC
Q psy15206        210 YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 ~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.|.+.++...|+|.|+|.+.
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~v~   85 (100)
T cd05713          64 SVALRIHNVRASDEGLYTCFFQ   85 (100)
T ss_pred             cEEEEEEcCChhhCEEEEEEEe
Confidence            3678888899999999999975

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.87  E-value=6.8e-05  Score=45.59  Aligned_cols=57  Identities=9%  Similarity=0.188  Sum_probs=35.9

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeCCEEec----------CCCeEEEEE-eccccC-CceEEEEecC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV----------NDEYHSISN-FGTSEG-TTGSLQCKVP  231 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~----------~~~~~~~~~-~~~~~~-d~g~Y~C~~~  231 (232)
                      ....++.++|.|.+.|+.+.  .+.|.+||..+.          +++.|.+.. ...+.. ....|+|.|.
T Consensus        12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~   82 (96)
T cd07697          12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYK   82 (96)
T ss_pred             HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEE
Confidence            34456778999999996555  589999998753          223444322 222333 2345999874

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.86  E-value=9e-05  Score=46.23  Aligned_cols=54  Identities=20%  Similarity=0.243  Sum_probs=37.2

Q ss_pred             ccCeEEEEEEeecCC------CCeEEEeeCCE----E----ec--------------------CCCeEEEEEeccccCCc
Q psy15206        178 LHHDMDLDCHIEAYP------HPILYWAKDGE----I----VV--------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p------~~~~~W~~~g~----~----~~--------------------~~~~~~~~~~~~~~~d~  223 (232)
                      .|++++|.|.....|      ...+.|+|...    .    +.                    ......|.+.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            478899999876653      34699998531    0    00                    01234677788888999


Q ss_pred             eEEEEecC
Q psy15206        224 GSLQCKVP  231 (232)
Q Consensus       224 g~Y~C~~~  231 (232)
                      |.|.|.+.
T Consensus        81 G~Y~C~v~   88 (106)
T cd05877          81 GRYRCEVI   88 (106)
T ss_pred             EEEEEEEE
Confidence            99999874

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.83  E-value=4.8e-05  Score=46.62  Aligned_cols=53  Identities=15%  Similarity=0.274  Sum_probs=35.9

Q ss_pred             cCeEEEEEEeecCCCC-eEEEeeCCE----Eec-----------------------CCCeEEEEEeccccCCceEEEEec
Q psy15206        179 HHDMDLDCHIEAYPHP-ILYWAKDGE----IVV-----------------------NDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~-~~~W~~~g~----~~~-----------------------~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      |++++|.|........ .+.|+|...    .+.                       ......|.+.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            6789999985443332 589987421    110                       113456888899999999999987


Q ss_pred             C
Q psy15206        231 P  231 (232)
Q Consensus       231 ~  231 (232)
                      .
T Consensus        81 ~   81 (97)
T cd05846          81 N   81 (97)
T ss_pred             E
Confidence            4

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd00096 Ig Immunoglobulin domain

Probab=97.83  E-value=0.00013  Score=41.08  Aligned_cols=58  Identities=41%  Similarity=0.669  Sum_probs=43.1

Q ss_pred             EEEEeeeccCCCCeEEEEeCCeeeCCCC--------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         92 VQLECHAEGHPIPTISWRRENNAILPNG--------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        92 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +.|.|.+.+.+...+.|++++.......        ........|.+.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            3688999886667899999876653322        112234578999999999999999998754

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.82  E-value=0.00012  Score=46.42  Aligned_cols=68  Identities=21%  Similarity=0.384  Sum_probs=46.8

Q ss_pred             CCCceEeecCCcEEEEeeeccC-CCCeEEEEeCCe--e---e---------CCCCcEEee------CCeEEECCCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH-PIPTISWRRENN--A---I---------LPNGQTIFT------GSTLQIPRITKEDR  138 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~--~---~---------~~~~~~~~~------~~~l~i~~~~~~~~  138 (232)
                      .+....+..|+++.|.|..... ....+.|++...  .   +         ....++...      ..+|.|.++..+|+
T Consensus         5 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   84 (116)
T cd07706           5 AQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDS   84 (116)
T ss_pred             eCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHC
Confidence            3455678899999999997653 345699998421  1   0         001222221      23699999999999


Q ss_pred             eEEEEEeEe
Q psy15206        139 GAYYCVAQN  147 (232)
Q Consensus       139 g~y~C~~~~  147 (232)
                      |.|.|.+..
T Consensus        85 g~Y~C~~~~   93 (116)
T cd07706          85 AKYFCALST   93 (116)
T ss_pred             EEEEEEEEC
Confidence            999999885

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.82  E-value=0.00012  Score=42.42  Aligned_cols=50  Identities=18%  Similarity=0.376  Sum_probs=31.8

Q ss_pred             EEEEEEeecCCC--CeEEEeeCCEEec-----------CCCeEEEEE----eccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPH--PILYWAKDGEIVV-----------NDEYHSISN----FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~--~~~~W~~~g~~~~-----------~~~~~~~~~----~~~~~~d~g~Y~C~~~  231 (232)
                      ++|.|.+.|+.+  ..+.|+|||..+.           .++.|....    ......+...|+|+|.
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~   68 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVT   68 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEE
Confidence            689999998743  3799999998632           122333222    1223356679999874

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.82  E-value=0.00016  Score=45.21  Aligned_cols=63  Identities=30%  Similarity=0.564  Sum_probs=42.5

Q ss_pred             EeecCCcEEEEeeeccC-CCCeEEEEeCCeee-----------CC-----------CCcEEe--e----CCeEEECCCCC
Q psy15206         85 VAKEGQSVQLECHAEGH-PIPTISWRRENNAI-----------LP-----------NGQTIF--T----GSTLQIPRITK  135 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~-----------~~-----------~~~~~~--~----~~~l~i~~~~~  135 (232)
                      .+.+|++++|.|...+. ....+.||+.....           ..           ..++..  .    ...|.|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            45689999999998653 34579999854320           00           112211  1    12599999999


Q ss_pred             CCCeEEEEEeEe
Q psy15206        136 EDRGAYYCVAQN  147 (232)
Q Consensus       136 ~~~g~y~C~~~~  147 (232)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.81  E-value=0.00012  Score=42.88  Aligned_cols=50  Identities=20%  Similarity=0.373  Sum_probs=32.4

Q ss_pred             EEEEEEeec-CCCCeEEEeeCCEEecCCC---------e---EEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEA-YPHPILYWAKDGEIVVNDE---------Y---HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~-~p~~~~~W~~~g~~~~~~~---------~---~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.| .|.+.|+|+|+|..+....         +   -.+.+.-..+.|...|+|+|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~   64 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVD   64 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEc
Confidence            689999755 6777899999997765321         1   122223333355558999984

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.80  E-value=0.00011  Score=45.26  Aligned_cols=64  Identities=16%  Similarity=0.300  Sum_probs=40.4

Q ss_pred             eecCCcEEEEeeecc-CC-CCeEEEEeCCeeeCCCCc----E------EeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         86 AKEGQSVQLECHAEG-HP-IPTISWRRENNAILPNGQ----T------IFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~-~~-~~~~~W~~~~~~~~~~~~----~------~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ...++.+.|.|.+.| +| ...+.|+++|..+.....    .      ....+.|.+..-...+...|.|.+.+..
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            335677999999998 44 346999999987632110    0      1112245454444445668999998854

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.79  E-value=0.00014  Score=43.18  Aligned_cols=54  Identities=20%  Similarity=0.450  Sum_probs=36.0

Q ss_pred             ccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEEEEE-eccccCCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHSISN-FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~~~~-~~~~~~d~g~Y~C~~~  231 (232)
                      .++.+.|.|.+.++.+.  .+.|+++|..+..           ++.|.+.. ..+...+...|+|+|.
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ysC~V~   74 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTWNSGDEYSCRVT   74 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEETTTTGGEEEEEE
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecCCCCCEEEEEEE
Confidence            48899999999886554  5999999887542           23333222 2233455568999874

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.77  E-value=0.00011  Score=44.52  Aligned_cols=54  Identities=20%  Similarity=0.412  Sum_probs=34.6

Q ss_pred             ccCeEEEEEEeecCCCC--eEEEeeCCEEec-----------CCCeEEEEEe-cccc---CCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEAYPHP--ILYWAKDGEIVV-----------NDEYHSISNF-GTSE---GTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~-----------~~~~~~~~~~-~~~~---~d~g~Y~C~~~  231 (232)
                      .++.++|.|.+.|+.+.  .+.|++||..+.           .++.|.+... .+..   .+...|.|+|.
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~   83 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVT   83 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEE
Confidence            45668999999996554  589999998752           1223433222 1222   35578999974

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.75  E-value=0.00013  Score=44.99  Aligned_cols=30  Identities=17%  Similarity=0.591  Sum_probs=24.0

Q ss_pred             eccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        177 ALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      ..++.++|.|.+.|+.+.  .+.|++||..+.
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~   45 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLS   45 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence            356789999999997665  479999987653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.75  E-value=0.0014  Score=39.84  Aligned_cols=27  Identities=30%  Similarity=0.439  Sum_probs=23.0

Q ss_pred             CCeEEECCCCCCCCeEEEEEeEeC-CCC
Q psy15206        125 GSTLQIPRITKEDRGAYYCVAQNG-IGR  151 (232)
Q Consensus       125 ~~~l~i~~~~~~~~g~y~C~~~~~-~~~  151 (232)
                      +.+|.|.+++.+|.|.|.|.+..- .|.
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~   86 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVTYPQGS   86 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEeCCCCC
Confidence            468999999999999999999863 454

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.73  E-value=0.00038  Score=41.82  Aligned_cols=53  Identities=26%  Similarity=0.555  Sum_probs=35.1

Q ss_pred             cCeEEEEEEe-ecCCCCeEEEeeCCEEec----------CCCeE----EEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHI-EAYPHPILYWAKDGEIVV----------NDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~-~~~p~~~~~W~~~g~~~~----------~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+.+.+.|.+ .++|.+.+.|+.++..+.          ....+    .|........+...++|.|.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~   81 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRAS   81 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEE
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEE
Confidence            7799999975 678989999999986651          22222    23333333356678999874

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.73  E-value=0.0004  Score=40.24  Aligned_cols=58  Identities=26%  Similarity=0.421  Sum_probs=38.0

Q ss_pred             EEEEeeeccC-CC-CeEEEEeCCeeeCCCC----------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         92 VQLECHAEGH-PI-PTISWRRENNAILPNG----------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        92 ~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +.|.|.+.|. |. ..+.|+++|..+....          ......+.|.+......+...|+|.+.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6799999984 44 4799999998632211          111112356665556667779999998753

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.72  E-value=0.00011  Score=45.65  Aligned_cols=56  Identities=14%  Similarity=0.240  Sum_probs=38.8

Q ss_pred             eeccCeEEEEEEeecCCCCeEEEeeCCE----E---ec------------------------CCCeEEEEEeccccCCce
Q psy15206        176 QALHHDMDLDCHIEAYPHPILYWAKDGE----I---VV------------------------NDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       176 ~~~g~~~~l~C~~~~~p~~~~~W~~~g~----~---~~------------------------~~~~~~~~~~~~~~~d~g  224 (232)
                      +..|++++|.|.........+.|+|...    .   +.                        ....+.|.+.++..+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            5679999999987555344689987421    1   10                        012346777788889999


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      .|.|.+.
T Consensus        83 tY~Ca~~   89 (104)
T cd05720          83 YYFCSVA   89 (104)
T ss_pred             EEEEEEc
Confidence            9999864

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.69  E-value=0.00019  Score=43.74  Aligned_cols=57  Identities=21%  Similarity=0.336  Sum_probs=35.4

Q ss_pred             eeeccCeEEEEEEeecC-CCC--eEEEeeCCEEec----------CCCeEEEEEec-ccc---CCceEEEEecC
Q psy15206        175 GQALHHDMDLDCHIEAY-PHP--ILYWAKDGEIVV----------NDEYHSISNFG-TSE---GTTGSLQCKVP  231 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~-p~~--~~~W~~~g~~~~----------~~~~~~~~~~~-~~~---~d~g~Y~C~~~  231 (232)
                      .+..|+.++|.|.+.|+ .++  .+.|+|||....          .++.|.+.... ...   .+.-.|.|.|.
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~   83 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT   83 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence            45568899999999999 443  589999874321          22334333321 222   23447999874

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.67  E-value=0.00027  Score=42.47  Aligned_cols=62  Identities=23%  Similarity=0.468  Sum_probs=41.1

Q ss_pred             CCcEEEEeeecc-CCCCeEEEEeCCeeeCC---------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         89 GQSVQLECHAEG-HPIPTISWRRENNAILP---------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        89 g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      |+.+.+.|.+.+ .|.+.+.|+.++.....         ........+.|.+..-...+...++|.+.+...
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            679999998654 88889999999877611         111111123566655555566799999998653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>PHA03376 BARF1; Provisional

Probab=97.66  E-value=0.00019  Score=48.33  Aligned_cols=57  Identities=14%  Similarity=0.226  Sum_probs=41.5

Q ss_pred             eeeeccCeEEEEEEee---cCCCCeEEEeeCCE----E-e---------------------cCCCeEEEEEeccccCCce
Q psy15206        174 IGQALHHDMDLDCHIE---AYPHPILYWAKDGE----I-V---------------------VNDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~---~~p~~~~~W~~~g~----~-~---------------------~~~~~~~~~~~~~~~~d~g  224 (232)
                      +....|+++.|.|.-.   .-+...|.|+|++.    - +                     .+.+++.|.+.+.+.+|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            4566899999999864   12334699999421    1 1                     1356788888999999999


Q ss_pred             EEEEec
Q psy15206        225 SLQCKV  230 (232)
Q Consensus       225 ~Y~C~~  230 (232)
                      +|+|.+
T Consensus       101 tY~C~f  106 (221)
T PHA03376        101 NYLCRM  106 (221)
T ss_pred             eEEEEE
Confidence            999986

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.65  E-value=0.00023  Score=44.00  Aligned_cols=62  Identities=15%  Similarity=0.320  Sum_probs=38.6

Q ss_pred             cCCcEEEEeeeccCCCC--eEEEEeCCeeeCCCC-------------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGHPIP--TISWRRENNAILPNG-------------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~-------------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .+..+.|.|.+.|..+.  .+.|+++|..+....             ......+.|.+..-...+...|.|.+.+..
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            46789999999994443  589999998753221             011112234444333345557999999854

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.65  E-value=0.00035  Score=44.59  Aligned_cols=61  Identities=11%  Similarity=0.060  Sum_probs=41.3

Q ss_pred             cceeeeeccCeEEEEEEeecCC------CCeEEEeeCCE-----E-ec----------------------CCCeEEEEEe
Q psy15206        171 STRIGQALHHDMDLDCHIEAYP------HPILYWAKDGE-----I-VV----------------------NDEYHSISNF  216 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p------~~~~~W~~~g~-----~-~~----------------------~~~~~~~~~~  216 (232)
                      |..+.+..|+.++|.|......      ...+.|+|...     . +.                      ......|.+.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            5556788999999999754221      23589997521     1 10                      1123567777


Q ss_pred             ccccCCceEEEEecC
Q psy15206        217 GTSEGTTGSLQCKVP  231 (232)
Q Consensus       217 ~~~~~d~g~Y~C~~~  231 (232)
                      ++..+|+|.|.|++.
T Consensus        86 ~l~~~Dsg~Y~C~~~  100 (119)
T cd05712          86 DAQPEDSGKYFFRVE  100 (119)
T ss_pred             cCChhhCeEEEEEEE
Confidence            888899999999873

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.64  E-value=0.00076  Score=43.02  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=45.3

Q ss_pred             CCceEeecCCcEEEEeeeccCC------CCeEEEEeCCeee--------CC---------CCcEEe------eCCeEEEC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP------IPTISWRRENNAI--------LP---------NGQTIF------TGSTLQIP  131 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~------~~~~~W~~~~~~~--------~~---------~~~~~~------~~~~l~i~  131 (232)
                      +....+.+|+.+.|.|......      ...+.|++....-        ..         .+++..      .+.+|.|.
T Consensus         6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~   85 (119)
T cd05712           6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS   85 (119)
T ss_pred             CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence            5556788999999999864221      2458999863210        00         012211      12379999


Q ss_pred             CCCCCCCeEEEEEeEeC
Q psy15206        132 RITKEDRGAYYCVAQNG  148 (232)
Q Consensus       132 ~~~~~~~g~y~C~~~~~  148 (232)
                      +++.+|+|.|.|.+...
T Consensus        86 ~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          86 DAQPEDSGKYFFRVELG  102 (119)
T ss_pred             cCChhhCeEEEEEEEcC
Confidence            99999999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.62  E-value=0.0003  Score=44.68  Aligned_cols=61  Identities=10%  Similarity=0.166  Sum_probs=41.5

Q ss_pred             cceeeeeccCeEEEEEEeecCC--CCeEEEeeCC--E-E--e------------c------------C-CCeEEEEEecc
Q psy15206        171 STRIGQALHHDMDLDCHIEAYP--HPILYWAKDG--E-I--V------------V------------N-DEYHSISNFGT  218 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~g--~-~--~------------~------------~-~~~~~~~~~~~  218 (232)
                      |....+..|++++|.|...+..  ...+.|+|..  . .  +            .            . ...+.|.+.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4556778999999999875443  3458998742  1 1  1            0            0 12245777788


Q ss_pred             ccCCceEEEEecC
Q psy15206        219 SEGTTGSLQCKVP  231 (232)
Q Consensus       219 ~~~d~g~Y~C~~~  231 (232)
                      ..+|+|.|.|.+.
T Consensus        84 ~~~Dsa~YyCa~~   96 (117)
T cd04981          84 TPEDTAVYYCARG   96 (117)
T ss_pred             CHHHCEEEEEEEE
Confidence            8899999999863

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.60  E-value=0.00034  Score=44.06  Aligned_cols=31  Identities=19%  Similarity=0.314  Sum_probs=24.2

Q ss_pred             eeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        176 QALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       176 ~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      ...++.++|.|.+.|+.+.  .+.|+|||..+.
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~   47 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVT   47 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECC
Confidence            3356779999999997555  689999997754

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.60  E-value=0.00038  Score=42.33  Aligned_cols=27  Identities=11%  Similarity=0.345  Sum_probs=22.1

Q ss_pred             ccCeEEEEEEeecCCCC--eEEEeeCCEE
Q psy15206        178 LHHDMDLDCHIEAYPHP--ILYWAKDGEI  204 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~  204 (232)
                      .++.++|.|.+.|+.+.  .+.|+|||..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            46678999999997554  5899999986

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.57  E-value=0.00035  Score=43.72  Aligned_cols=23  Identities=17%  Similarity=0.203  Sum_probs=19.0

Q ss_pred             CeEEEEEeccccCCceEEEEecC
Q psy15206        209 EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ....|.+.+++.+|+|.|.|.+.
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~   92 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVV   92 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEE
Confidence            35677778888899999999874

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.56  E-value=0.00039  Score=42.31  Aligned_cols=22  Identities=23%  Similarity=0.243  Sum_probs=18.9

Q ss_pred             eEEEEEeccccCCceEEEEecC
Q psy15206        210 YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 ~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...|.+.+++.+|+|.|.|.+.
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEE
Confidence            4677888999999999999874

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.50  E-value=0.00035  Score=38.85  Aligned_cols=49  Identities=16%  Similarity=0.287  Sum_probs=33.6

Q ss_pred             ccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+|.|.|..    ..+|.|++ |..+.......+.+-.....-.|.|.|.++
T Consensus         5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s   53 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKES   53 (69)
T ss_pred             cCceEEEEecC----CCcEEEec-CcccccccccEEeccCcccCCCcceEecCc
Confidence            34578999965    24699999 554443335555555556677899999874

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.49  E-value=0.0016  Score=39.52  Aligned_cols=62  Identities=24%  Similarity=0.471  Sum_probs=36.8

Q ss_pred             CCcEEEEeeeccC-CCC-eEEEEeCCeeeCCCC---cEE-eeCCeEE---ECCCCCCCCeEEEEEeEeCCC
Q psy15206         89 GQSVQLECHAEGH-PIP-TISWRRENNAILPNG---QTI-FTGSTLQ---IPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        89 g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~~~---~~~-~~~~~l~---i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      ++.+.|.|.+.|. |.. .+.|+++++......   ... ..+++..   .-.+...+...|+|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            6789999999995 443 799999986322111   111 1111111   122333467899999988643

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.49  E-value=0.00032  Score=41.13  Aligned_cols=23  Identities=22%  Similarity=0.249  Sum_probs=19.3

Q ss_pred             CCeEEEEEeccccCCceEEEEec
Q psy15206        208 DEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       208 ~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      ...+.|.+.+++.+|+|.|.|.+
T Consensus        59 ~~~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       59 KNDVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             CCEEEEEEcCCCHHHCEEEEEcC
Confidence            45577888889999999999975

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.47  E-value=0.00055  Score=42.51  Aligned_cols=62  Identities=23%  Similarity=0.358  Sum_probs=42.0

Q ss_pred             eecCCcEEEEeeeccCCCCeEEEEeCCee----e------CC------------CCcEEe----eCCeEEECCCCCCCCe
Q psy15206         86 AKEGQSVQLECHAEGHPIPTISWRRENNA----I------LP------------NGQTIF----TGSTLQIPRITKEDRG  139 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~----~------~~------------~~~~~~----~~~~l~i~~~~~~~~g  139 (232)
                      +.+|+++.|.|.........+.|++....    +      ..            ..++..    ....|.|.++..+|+|
T Consensus         3 v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDsg   82 (104)
T cd05720           3 AELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENEG   82 (104)
T ss_pred             ccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHCE
Confidence            45799999999886554556999986422    1      00            001111    1236999999999999


Q ss_pred             EEEEEeEe
Q psy15206        140 AYYCVAQN  147 (232)
Q Consensus       140 ~y~C~~~~  147 (232)
                      .|.|.+..
T Consensus        83 tY~Ca~~~   90 (104)
T cd05720          83 YYFCSVAS   90 (104)
T ss_pred             EEEEEEcc
Confidence            99998763

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.45  E-value=0.00053  Score=42.24  Aligned_cols=22  Identities=14%  Similarity=0.259  Sum_probs=18.9

Q ss_pred             eEEEEEeccccCCceEEEEecC
Q psy15206        210 YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 ~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...|.+.+++.+|+|+|.|.+.
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~   84 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVI   84 (100)
T ss_pred             ceEEEEecCccccceEEEEEEE
Confidence            4678888999999999999863

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.41  E-value=0.0014  Score=41.72  Aligned_cols=67  Identities=30%  Similarity=0.530  Sum_probs=45.0

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeCCe--ee------C-----------CCCcEEee--C----CeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRRENN--AI------L-----------PNGQTIFT--G----STLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~--~~------~-----------~~~~~~~~--~----~~l~i~~~  133 (232)
                      +....+.+|++++|.|...+..  ...+.||+...  .+      .           ...++...  .    ..|.|.++
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~   83 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL   83 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence            4556788999999999875432  45699998532  11      0           01122111  1    26899999


Q ss_pred             CCCCCeEEEEEeEe
Q psy15206        134 TKEDRGAYYCVAQN  147 (232)
Q Consensus       134 ~~~~~g~y~C~~~~  147 (232)
                      ..+|+|.|.|.+..
T Consensus        84 ~~~Dsa~YyCa~~~   97 (117)
T cd04981          84 TPEDTAVYYCARGL   97 (117)
T ss_pred             CHHHCEEEEEEEEc
Confidence            99999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.41  E-value=0.0015  Score=36.43  Aligned_cols=49  Identities=24%  Similarity=0.574  Sum_probs=36.2

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      ..++.|.|..    ..++.|++ |..+....     ..++.+-....+..|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~-----~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVS-----NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Cccccccc-----ccEEeccCcccCCCcceEecCcc
Confidence            4579999965    24699999 65543221     45688888888999999998865

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.38  E-value=0.0012  Score=40.12  Aligned_cols=63  Identities=19%  Similarity=0.295  Sum_probs=39.4

Q ss_pred             cCCcEEEEeeecc-CCC-CeEEEEeCCeeeCCCC----------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         88 EGQSVQLECHAEG-HPI-PTISWRRENNAILPNG----------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        88 ~g~~~~l~C~~~~-~~~-~~~~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      ....+.|.|.+.| +|. ..+.|+++|..+....          ......+.|.+..-...+...|.|.+.+...
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~   87 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT   87 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence            3456899999999 444 4689999988752211          1111123455554444456689999998643

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.37  E-value=0.0014  Score=39.85  Aligned_cols=22  Identities=18%  Similarity=0.108  Sum_probs=18.4

Q ss_pred             eEEEEEeccccCCceEEEEecC
Q psy15206        210 YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 ~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...|.+.+++.+|.|.|+|++.
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEE
Confidence            3477788899999999999974

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.37  E-value=0.0012  Score=40.34  Aligned_cols=40  Identities=18%  Similarity=0.404  Sum_probs=27.0

Q ss_pred             cEEEec-cceeeeeccCeEEEEEEeecCC-C--CeEEEeeCCEE
Q psy15206        165 PIVTVQ-STRIGQALHHDMDLDCHIEAYP-H--PILYWAKDGEI  204 (232)
Q Consensus       165 p~~~~~-~~~~~~~~g~~~~l~C~~~~~p-~--~~~~W~~~g~~  204 (232)
                      |.+.+. |.......+..++|.|.+.++. +  ..|.|.++|..
T Consensus         4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986           4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            444333 3333344678899999999966 3  25999999753

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.35  E-value=0.0012  Score=41.60  Aligned_cols=63  Identities=22%  Similarity=0.374  Sum_probs=40.0

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCC-----------cEEeeCCeEEECCCCCCC-CeEEEEEeEeCCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNG-----------QTIFTGSTLQIPRITKED-RGAYYCVAQNGIG  150 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~-----------~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~~  150 (232)
                      .+..+.|.|.+.+. |. ..+.|++++..+....           ......+.|.+......+ ...|.|.+.+...
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~   93 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG   93 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence            45678999999994 44 3689999997754221           111122345555544433 4589999998643

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.32  E-value=0.00088  Score=40.83  Aligned_cols=64  Identities=17%  Similarity=0.246  Sum_probs=38.3

Q ss_pred             eecCCcEEEEeeeccC-CCC--eEEEEeCCeeeCCC---------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         86 AKEGQSVQLECHAEGH-PIP--TISWRRENNAILPN---------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~-~~~--~~~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +..++.+.|.|.+.|. .++  .+.|.++++.....         .......+.|.+..-...+.-.|.|.+.+..
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            4457899999999998 443  58999987433210         0011112234444433334447999999864

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.28  E-value=0.0022  Score=40.44  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=19.3

Q ss_pred             CeEEEEEeccccCCceEEEEecC
Q psy15206        209 EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +...|.+.+++..|+|.|.|++.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~   99 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVM   99 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEE
Confidence            35678888889999999999874

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.27  E-value=0.0032  Score=38.24  Aligned_cols=59  Identities=22%  Similarity=0.361  Sum_probs=37.4

Q ss_pred             cCCcEEEEeeeccC-CCC-eEEEEeCCeeeCCCC---cEE-eeC------CeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGH-PIP-TISWRRENNAILPNG---QTI-FTG------STLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~~~---~~~-~~~------~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .++.+.|.|.+.|. |.. .+.|+++|..+....   ... ..+      +.|.+   ...+...|.|.+.+..
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ysC~V~H~~   83 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLET---TPSRGDTYTCVVEHSS   83 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEE---cCCCCCEEEEEEEeCC
Confidence            57889999999994 433 689999998754321   000 111      23333   2345558999999864

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.25  E-value=0.0045  Score=37.60  Aligned_cols=68  Identities=16%  Similarity=0.266  Sum_probs=42.4

Q ss_pred             CceEeecCCcEEE-Eeeec-cCCCCeEEEEeCCeeeCCC------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         82 QLSVAKEGQSVQL-ECHAE-GHPIPTISWRRENNAILPN------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        82 ~~~~~~~g~~~~l-~C~~~-~~~~~~~~W~~~~~~~~~~------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ....+.+|+.+.+ .|.+. |.|.+.|.|+.+.......      .......+.+.+......|...++|.+.+..
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            3345667888888 88864 5888899999874332110      1112222355555555556669999998853

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>KOG1480|consensus

Probab=97.23  E-value=0.00047  Score=56.09  Aligned_cols=151  Identities=20%  Similarity=0.359  Sum_probs=91.4

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecCCC----CCeEEEEeCcEee---------e----eEEEEe------------
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHP----IPTISWRRNFKRL---------G----RLHLAI------------   61 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p----~~~~~W~~~~~~~---------~----~~~~~~------------   61 (232)
                      .-|.|+.. +.+..+..|..+.|.|.+...+    .+.-.|..+....         |    ...+.+            
T Consensus        23 ~l~~~~~~-p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~  101 (909)
T KOG1480|consen   23 DLPHFTTE-PKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPE  101 (909)
T ss_pred             Ccceeeec-CCccceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcc
Confidence            45677777 8888899999999999997432    2333476632111         1    111111            


Q ss_pred             eee---------------cCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCCCcE-Eee
Q psy15206         62 PYT---------------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNGQT-IFT  124 (232)
Q Consensus        62 ~~~---------------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~-~~~  124 (232)
                      .|.               ...+...+........+...-+..+....+.|.. .+.+...+.|++++..+.+..+. ...
T Consensus       102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~  181 (909)
T KOG1480|consen  102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS  181 (909)
T ss_pred             ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhh
Confidence            111               0000000111122223334455566777888875 56777789999998877654332 224


Q ss_pred             CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      ...+.+..++..|.|+|+|.+.+..+......+.+.+.
T Consensus       182 d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  182 DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             cCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence            56788999999999999999999877655555555554

>PHA02982 hypothetical protein; Provisional

Probab=97.15  E-value=0.014  Score=40.22  Aligned_cols=115  Identities=15%  Similarity=0.283  Sum_probs=68.1

Q ss_pred             EeecCCcEEEEeeeccC-CCCeEEEEeCCeeeCC----------C------C-c------EEeeCCeEEECCCCCCCCeE
Q psy15206         85 VAKEGQSVQLECHAEGH-PIPTISWRRENNAILP----------N------G-Q------TIFTGSTLQIPRITKEDRGA  140 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~----------~------~-~------~~~~~~~l~i~~~~~~~~g~  140 (232)
                      ....++++.|.|..... .-.+..|++...-...          .      . .      .....++|+|.++..+..|.
T Consensus        35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~GC  114 (251)
T PHA02982         35 NATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLGC  114 (251)
T ss_pred             hccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCCc
Confidence            34458899999985432 2335779875422111          0      0 0      01235789999999999999


Q ss_pred             EEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEE
Q psy15206        141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI  204 (232)
Q Consensus       141 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~  204 (232)
                      |+|.+....+....-...+.|+.-..+ ..    -........+.|-+-+...+-..|.-+|..
T Consensus       115 Ytc~~ks~~~k~E~c~kCl~V~~~~V~-~~----W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        115 FTCEAKDAEGKEETCEKCLEIQKEDIL-YV----VEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             eEEEEecCCCchheeheeeeEecceEE-EE----EEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            999999876554443445555321111 10    112344567889875544443589877753

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.13  E-value=0.0027  Score=35.10  Aligned_cols=51  Identities=22%  Similarity=0.457  Sum_probs=34.4

Q ss_pred             ecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         87 KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        87 ~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      ..|..|.|+|....   ..+.|.+++..+...      ...+.+.+-. ++.|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~~---~~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCC---CCceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCC
Confidence            46889999997642   239999998554331      2233344444 889999999864

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.12  E-value=0.0023  Score=39.21  Aligned_cols=22  Identities=18%  Similarity=0.134  Sum_probs=18.6

Q ss_pred             eEEEEEeccccCCceEEEEecC
Q psy15206        210 YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 ~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...|.+.+++.+|.|.|+|.+.
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~   83 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFA   83 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEE
Confidence            3577788899999999999974

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.11  E-value=0.0044  Score=36.62  Aligned_cols=60  Identities=23%  Similarity=0.395  Sum_probs=39.3

Q ss_pred             cCCcEEEEeeecc-CCCC-eEEEEeCCeeeCCCCcE----------EeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         88 EGQSVQLECHAEG-HPIP-TISWRRENNAILPNGQT----------IFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        88 ~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .++.+.|.|.+.+ +|.. .+.|++++..+......          ....+.|.+.   ..+...|.|.+.+...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            3788999999998 4433 69999999876432211          1112244444   4555589999998644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>smart00406 IGv Immunoglobulin V-Type

Probab=97.05  E-value=0.0018  Score=37.89  Aligned_cols=20  Identities=40%  Similarity=0.878  Sum_probs=17.7

Q ss_pred             CeEEECCCCCCCCeEEEEEe
Q psy15206        126 STLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus       126 ~~l~i~~~~~~~~g~y~C~~  145 (232)
                      .+|.|.+++.+|.|.|.|.+
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       62 VSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEcCCCHHHCEEEEEcC
Confidence            36999999999999999964

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.03  E-value=0.0029  Score=38.62  Aligned_cols=64  Identities=14%  Similarity=0.138  Sum_probs=38.3

Q ss_pred             eecCCcEEEEeeeccCC--C-CeEEEEeCCeeeCC-------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         86 AKEGQSVQLECHAEGHP--I-PTISWRRENNAILP-------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~~--~-~~~~W~~~~~~~~~-------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +..+..++|.|.+.+..  . ..+.|.++|+.-..       ........+.|.+..-.......|+|.+.+..
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~   89 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE   89 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence            33577899999999844  2 36999998864100       00111112345555433344457999998854

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.02  E-value=0.0076  Score=36.69  Aligned_cols=60  Identities=17%  Similarity=0.238  Sum_probs=36.0

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCC---------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPN---------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .+..+.|.|.+.|. |. ..+.|.++|..+...         .......+.|.+..-.  ....|+|.+.+..
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g   85 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG   85 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence            35678999999994 43 358999999875321         1111112344444322  2235999999853

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.00  E-value=0.013  Score=45.57  Aligned_cols=78  Identities=19%  Similarity=0.247  Sum_probs=58.1

Q ss_pred             eEEECCCCCCCCeEEEEEeEeCC-C-CceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC---eEEEeeC
Q psy15206        127 TLQIPRITKEDRGAYYCVAQNGI-G-RGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAKD  201 (232)
Q Consensus       127 ~l~i~~~~~~~~g~y~C~~~~~~-~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~  201 (232)
                      .|.|..++..+.|.|.-.+.+.. + ....+.+.+.+.-+|.+.+.+.  .+.+|+...-.|.+..+.++   .+.|++|
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n  367 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTSN  367 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            58999999999999987765432 1 1234566777777887766554  35689999999998776655   4999999


Q ss_pred             CEEec
Q psy15206        202 GEIVV  206 (232)
Q Consensus       202 g~~~~  206 (232)
                      |..+.
T Consensus       368 g~~V~  372 (566)
T PHA03269        368 FGNIG  372 (566)
T ss_pred             CcccC
Confidence            87765

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.96  E-value=0.0044  Score=38.73  Aligned_cols=59  Identities=14%  Similarity=0.125  Sum_probs=39.3

Q ss_pred             eeeeeccCeEEEEEEeecCCCC---eEEEeeCCE-Ee-------------------------cCCCeEEEEEeccccCCc
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHP---ILYWAKDGE-IV-------------------------VNDEYHSISNFGTSEGTT  223 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~g~-~~-------------------------~~~~~~~~~~~~~~~~d~  223 (232)
                      ...+..|+.++|.|...|+-..   .+.|.|+.. .+                         .+.+...+.+.+.+.+|+
T Consensus         7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT   86 (115)
T cd05721           7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT   86 (115)
T ss_pred             CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence            3445677889999988665433   478887411 11                         023446777777888999


Q ss_pred             eEEEEecC
Q psy15206        224 GSLQCKVP  231 (232)
Q Consensus       224 g~Y~C~~~  231 (232)
                      +.|.|...
T Consensus        87 a~Y~Ca~e   94 (115)
T cd05721          87 DIYFCKIE   94 (115)
T ss_pred             eEEEEEee
Confidence            99999754

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.93  E-value=0.014  Score=35.50  Aligned_cols=61  Identities=18%  Similarity=0.280  Sum_probs=37.1

Q ss_pred             CCcEEEEeeec-cCCCCeEEEEeCCeeeCC------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         89 GQSVQLECHAE-GHPIPTISWRRENNAILP------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        89 g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .....+.|.+. |.|.+.|.|+++......      ........+.|.+.....++...|+|.+.+..
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~   82 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPT   82 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence            34567899984 588889999996211110      01111122356665555555569999999864

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.93  E-value=0.007  Score=36.82  Aligned_cols=61  Identities=23%  Similarity=0.415  Sum_probs=36.3

Q ss_pred             cCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCC----------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGHPI--PTISWRRENNAILPNG----------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .++.+.|.|.+.|..+  ..+.|.++|.. ....          ......+.|.+..-.......|.|.+.+..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            4567999999999444  35899999986 2110          001111234444333223457999998854

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.92  E-value=0.0081  Score=36.44  Aligned_cols=58  Identities=17%  Similarity=0.359  Sum_probs=36.1

Q ss_pred             CCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc----------EEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         89 GQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ----------TIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        89 g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~----------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ++...|.|.+.|. |. ..++|.++|..+.....          .....+.|.+..   .+...|+|.+.+..
T Consensus        15 ~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~   84 (94)
T cd05767          15 GEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG   84 (94)
T ss_pred             CCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence            5568999999994 43 46899999987543211          011112344433   34558999999853

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.91  E-value=0.0078  Score=36.41  Aligned_cols=61  Identities=16%  Similarity=0.238  Sum_probs=37.0

Q ss_pred             cCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCcE----EeeCCeEEE---CCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGHPI--PTISWRRENNAILPNGQT----IFTGSTLQI---PRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~----~~~~~~l~i---~~~~~~~~g~y~C~~~~~~  149 (232)
                      .|+...|.|.+.|..+  ..+.|.++|..+. ....    ...+++..+   -.+...+...|.|.+.+..
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            4666789999999443  3589999998764 2110    111222221   1233455668999999853

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.83  E-value=0.12  Score=39.92  Aligned_cols=110  Identities=14%  Similarity=0.126  Sum_probs=62.0

Q ss_pred             EeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCCCCcEE----------eeCCeEEECCCCCCCC-eEEEEEeEeCCC
Q psy15206         85 VAKEGQSVQLECHAEGHPIP---TISWRRENNAILPNGQTI----------FTGSTLQIPRITKEDR-GAYYCVAQNGIG  150 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~~~-g~y~C~~~~~~~  150 (232)
                      .+.+|+...-.|.+..+.++   .+.||.++..+.......          ...+++.+........ -..+|.+.-...
T Consensus       230 PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd  309 (466)
T PHA03270        230 AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRD  309 (466)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccC
Confidence            45689999999999774443   499999998774322110          1123444444322222 368999875332


Q ss_pred             C----ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC-CeEEEeeCC
Q psy15206        151 R----GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH-PILYWAKDG  202 (232)
Q Consensus       151 ~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~g  202 (232)
                      .    ..++.....|..+|.+.+..     ..|+   ..|.+.--|. ..+.|+-++
T Consensus       310 ~vS~sR~nAa~~P~VY~~P~Isv~F-----~dG~---AVCtA~CVPegV~l~W~V~D  358 (466)
T PHA03270        310 SVSFSRRNATGAPTVLPRPTIEMEF-----GGDE---AVCTAACVPEGVTLAWLLGA  358 (466)
T ss_pred             CccceeecccccCccccCCeEEEEE-----eCCE---EEEeccccCCCCEEEEEecC
Confidence            2    12333444566677665532     2232   3466655443 369997654

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.74  E-value=0.025  Score=43.45  Aligned_cols=79  Identities=16%  Similarity=0.242  Sum_probs=59.9

Q ss_pred             CeEEECCCCCCCCeEEEEEeEeCCCC-ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC---eEEEeeC
Q psy15206        126 STLQIPRITKEDRGAYYCVAQNGIGR-GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAKD  201 (232)
Q Consensus       126 ~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~  201 (232)
                      ..|.|..++....|.|+-...+..+. ...+.+++...-+|.+.+.+.  .+-.|+...-.|.+..+.++   .+.|++|
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n  259 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEG  259 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence            35899999999999999997765433 233456666677888776655  35689999999998776655   4999999


Q ss_pred             CEEec
Q psy15206        202 GEIVV  206 (232)
Q Consensus       202 g~~~~  206 (232)
                      |..+.
T Consensus       260 g~~V~  264 (466)
T PHA03270        260 GDEVF  264 (466)
T ss_pred             Ccccc
Confidence            98764

>TIGR00864 PCC polycystin cation channel protein

Probab=96.73  E-value=0.59  Score=44.94  Aligned_cols=181  Identities=10%  Similarity=0.092  Sum_probs=99.4

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee----------------eeEEEEeeee--------cCceeecCCcE
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------------GRLHLAIPYT--------SPEAQVDTPPV   75 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~----------------~~~~~~~~~~--------~~~l~v~~~p~   75 (232)
                      .....+..|+.++|.+.+...+...+.|...+...                |.|.+...-.        .+.+.|..+-.
T Consensus      1874 as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~ 1953 (2740)
T TIGR00864      1874 ASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFSHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVR 1953 (2740)
T ss_pred             cccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEEeecCCCCcEEEEEEEEeccceeeeeEEEEEEEecc
Confidence            44556789999999999987778899999842111                1222222111        22233322211


Q ss_pred             EecC-CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeE--eCCCCc
Q psy15206         76 ILNN-SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ--NGIGRG  152 (232)
Q Consensus        76 ~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~--~~~~~~  152 (232)
                      -..+ ......+..|+...|........+..+.|+.....+.........+...+..   ....|.|.-.+.  |..+. 
T Consensus      1954 gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~---~~~~G~~~I~v~A~N~l~s- 2029 (2740)
T TIGR00864      1954 GLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYT---AEAAGLLEIQLGAFNALGA- 2029 (2740)
T ss_pred             ceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEc---cCCCcEEEEEEEEEcccCc-
Confidence            1110 1111124568888888887655566789986532222222222222222222   246788877754  55565 


Q ss_pred             eeeEEEEEEEeccE-EEeccceeeeeccCeEEEEEEeecCC-CCeEEEeeC-CEE
Q psy15206        153 ARRKIEVKVEFAPI-VTVQSTRIGQALHHDMDLDCHIEAYP-HPILYWAKD-GEI  204 (232)
Q Consensus       153 ~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~-g~~  204 (232)
                      ......+.|+.+.. ..+.........+..+.+.|.....+ ...+.|-.+ |..
T Consensus      2030 ~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~ 2084 (2740)
T TIGR00864      2030 ENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSA 2084 (2740)
T ss_pred             ccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCC
Confidence            44555666665543 22332334456788999999985544 347999875 443

Note: this model has been restricted to the amino half because for technical reasons.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.66  E-value=0.0094  Score=36.12  Aligned_cols=56  Identities=13%  Similarity=0.255  Sum_probs=35.7

Q ss_pred             eeccCeEEEEEEeec-CCC--CeEEEeeCCEEecCCC-------------eEEEEEeccccCCce-EEEEecCC
Q psy15206        176 QALHHDMDLDCHIEA-YPH--PILYWAKDGEIVVNDE-------------YHSISNFGTSEGTTG-SLQCKVPV  232 (232)
Q Consensus       176 ~~~g~~~~l~C~~~~-~p~--~~~~W~~~g~~~~~~~-------------~~~~~~~~~~~~d~g-~Y~C~~~~  232 (232)
                      ...|..+++.|.+.+ .|.  ..+.|+++...+....             ...++..- +.+|.| +|.|+|.+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L   84 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKL   84 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence            468999999999865 444  3599998765443211             12222222 356777 99999853

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.63  E-value=0.014  Score=35.44  Aligned_cols=60  Identities=15%  Similarity=0.251  Sum_probs=36.3

Q ss_pred             CcEEEEeeec-cCCCCeEEEEeCCeeeCCC------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         90 QSVQLECHAE-GHPIPTISWRRENNAILPN------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        90 ~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ....+.|.+. +.|...|.|+++.......      .......+.|.+.....+|...|+|.+.+..
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~a   82 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHET   82 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence            3468899875 5788899999873221100      0111112355555555555569999999854

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.60  E-value=0.22  Score=38.93  Aligned_cols=111  Identities=17%  Similarity=0.191  Sum_probs=65.1

Q ss_pred             eEeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCCCCc----EE-------eeCCeEEECCCCC-CCCeEEEEEeEeC
Q psy15206         84 SVAKEGQSVQLECHAEGHPIP---TISWRRENNAILPNGQ----TI-------FTGSTLQIPRITK-EDRGAYYCVAQNG  148 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~----~~-------~~~~~l~i~~~~~-~~~g~y~C~~~~~  148 (232)
                      ..+.+|+...-.|.+..+-++   .+.|+.++..+.....    ..       ...+.|.+..... ...-..+|.+.-.
T Consensus       245 ~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~  324 (486)
T PHA03273        245 HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWY  324 (486)
T ss_pred             CccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEc
Confidence            346689999999999774433   4999999988762221    11       1123455555322 3334789998754


Q ss_pred             CCCce----eeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeCC
Q psy15206        149 IGRGA----RRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDG  202 (232)
Q Consensus       149 ~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g  202 (232)
                      .....    .+.....|..+|.+.+.     ...|   ...|.+.--|.  ..+.|+-+.
T Consensus       325 rd~vS~~RfsAt~~P~Vy~~P~Is~~-----F~~G---~AVCtA~CVP~egV~l~W~v~D  376 (486)
T PHA03273        325 RDEVSFARIAKAGTPSVFVAPTVSVT-----VEDG---DAVCTAKCVPSTGVFVSWSVND  376 (486)
T ss_pred             cCCcceeeccccccCccccCCeEEEE-----EeCC---EEEEecccccCCCeeEEEEccC
Confidence            33211    23344456666766553     2223   34587766665  469997654

>PHA03269 envelope glycoprotein C; Provisional

Probab=96.53  E-value=0.12  Score=40.58  Aligned_cols=126  Identities=17%  Similarity=0.125  Sum_probs=69.2

Q ss_pred             CceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCCCCc---E-------EeeCCeEEECC
Q psy15206         66 PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP---TISWRRENNAILPNGQ---T-------IFTGSTLQIPR  132 (232)
Q Consensus        66 ~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~---~-------~~~~~~l~i~~  132 (232)
                      +.+.+..+|.+..   ....+.+|+...-.|.+..+-++   .+.|+.++..+.....   .       ....++|.+..
T Consensus       322 VtV~~yr~PsVsV---~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~  398 (566)
T PHA03269        322 ITVMSYKRPNITV---IGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPA  398 (566)
T ss_pred             EEEEEecCCCccc---cCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccC
Confidence            3344455553322   22346689999999999774433   4999999887753111   1       11123454433


Q ss_pred             CCCCC--CeEEEEEeEeCCCCce----eeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeCC
Q psy15206        133 ITKED--RGAYYCVAQNGIGRGA----RRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDG  202 (232)
Q Consensus       133 ~~~~~--~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g  202 (232)
                      ....+  .-..+|.+.-..+...    +......|..+|.+...     ...|   ...|.+.--|.  ..+.|+-+.
T Consensus       399 ~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm~-----FedG---~AVCtA~CVP~~~V~l~WlVgD  468 (566)
T PHA03269        399 QKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSIE-----IIDG---HIVCLAKCVPRGVVHFNWWIND  468 (566)
T ss_pred             ccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEEE-----EeCC---EEEEecccccCCCceEEEEecC
Confidence            21122  3467999875433211    23444456667776553     2223   34577766655  368997654

>PHA02633 hypothetical protein; Provisional

Probab=96.40  E-value=0.018  Score=31.38  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=27.1

Q ss_pred             eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       124 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      ....|.|-++..+|+|.|.|...+..-. ....+.+.|.
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c-~~~si~l~V~   53 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYS-DMMKFDLCIC   53 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCee-EEEEEEEEEe
Confidence            3456899999999999999999875433 2333444443

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.34  E-value=0.027  Score=35.30  Aligned_cols=65  Identities=9%  Similarity=0.165  Sum_probs=41.7

Q ss_pred             CceEeecCCcEEEEeeeccCCC---CeEEEEeCCeeeC---------------CCCcEEee------CCeEEECCCCCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAIL---------------PNGQTIFT------GSTLQIPRITKED  137 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~~---------------~~~~~~~~------~~~l~i~~~~~~~  137 (232)
                      ....+..|..++|.|...|...   ..+.|++......               ...++...      .-.|.|.+++.+|
T Consensus         6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D   85 (115)
T cd05721           6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ   85 (115)
T ss_pred             CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence            3455667889999999876432   3588987532210               00111111      1268999999999


Q ss_pred             CeEEEEEeE
Q psy15206        138 RGAYYCVAQ  146 (232)
Q Consensus       138 ~g~y~C~~~  146 (232)
                      .+.|.|..+
T Consensus        86 Ta~Y~Ca~e   94 (115)
T cd05721          86 TDIYFCKIE   94 (115)
T ss_pred             CeEEEEEee
Confidence            999999864

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.22  E-value=0.044  Score=42.53  Aligned_cols=78  Identities=19%  Similarity=0.239  Sum_probs=58.0

Q ss_pred             eEEECCCCCCCCeEEEEEeEeCCCC-ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC---eEEEeeCC
Q psy15206        127 TLQIPRITKEDRGAYYCVAQNGIGR-GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAKDG  202 (232)
Q Consensus       127 ~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~g  202 (232)
                      .|.|..++....|.|+-.+.+..+. .....+++...-+|.+.+.+.  .+.+|+.....|.+..+.++   .+.|++||
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg  276 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNA  276 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence            4899999999999998666553332 133445555567888776655  35689999999998776655   49999999


Q ss_pred             EEec
Q psy15206        203 EIVV  206 (232)
Q Consensus       203 ~~~~  206 (232)
                      ..+.
T Consensus       277 ~~V~  280 (486)
T PHA03273        277 KEVD  280 (486)
T ss_pred             eecc
Confidence            8876

>PHA03271 envelope glycoprotein C; Provisional

Probab=96.11  E-value=0.45  Score=36.73  Aligned_cols=110  Identities=17%  Similarity=0.239  Sum_probs=61.4

Q ss_pred             EeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCCCCc---EE---------eeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         85 VAKEGQSVQLECHAEGHPIP---TISWRRENNAILPNGQ---TI---------FTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~---~~---------~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .+..|+...-.|.+..+-++   .+.|+.+|........   ..         ..-+++.+........-..+|.+.-..
T Consensus       256 PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~r  335 (490)
T PHA03271        256 PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQ  335 (490)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEcc
Confidence            45689999999999874443   4999999877643221   11         111344444443333447899987543


Q ss_pred             CCc---eeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCC-CCeEEEeeCC
Q psy15206        150 GRG---ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP-HPILYWAKDG  202 (232)
Q Consensus       150 ~~~---~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~g  202 (232)
                      ...   .++.....|..+|.+...     ...|+   ..|.+.--| ...++|+-+.
T Consensus       336 d~v~s~rnAaatP~VY~~P~ISv~-----FedG~---AVCtA~CVP~gV~lrWlVgD  384 (490)
T PHA03271        336 GDMISTTNATAIPTVYHHPRISLA-----FKDGY---AICTIECVPSGITVRWLVHD  384 (490)
T ss_pred             CCceeeeecccCCccccCCeEEEE-----EeCCE---EEEeccccCCCcEEEEEecC
Confidence            321   123333345556665542     22333   346665544 3369997544

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.09  E-value=0.013  Score=35.57  Aligned_cols=39  Identities=21%  Similarity=0.453  Sum_probs=29.1

Q ss_pred             eecCCCcceEeecCCeEEE-EEEec-CCCCCeEEEEeCcEe
Q psy15206         15 ILNNSTQLSVAKEGQSVQL-ECHAE-GHPIPTISWRRNFKR   53 (232)
Q Consensus        15 i~~~~~~~~~~~~G~~v~l-~C~~~-~~p~~~~~W~~~~~~   53 (232)
                      ..+.+.....+.+|+.+.+ .|.+. +.|.++|+|+.+...
T Consensus         3 ~~~~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G   43 (97)
T cd07704           3 VSLSPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYG   43 (97)
T ss_pred             cccCCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCC
Confidence            3334334556789999999 99987 589999999976444

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.09  E-value=0.016  Score=35.28  Aligned_cols=23  Identities=13%  Similarity=0.293  Sum_probs=19.3

Q ss_pred             cCeEEEEEEe-ecCCCCeEEEeeC
Q psy15206        179 HHDMDLDCHI-EAYPHPILYWAKD  201 (232)
Q Consensus       179 g~~~~l~C~~-~~~p~~~~~W~~~  201 (232)
                      .....+.|.+ .|+|.++|.|+++
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~   38 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETT   38 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeC
Confidence            3456889997 6899999999997

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>KOG1480|consensus

Probab=96.06  E-value=0.00092  Score=54.49  Aligned_cols=62  Identities=15%  Similarity=0.269  Sum_probs=45.1

Q ss_pred             ccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCCCeE------EEEEeccccCCceEEEEecC
Q psy15206        170 QSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVNDEYH------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~~~~------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+....+..+..+.+.|.. .+.|...+.|++++..+..+.+.      -+....+...|.|+|+|+|.
T Consensus       135 ~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~  203 (909)
T KOG1480|consen  135 SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEAT  203 (909)
T ss_pred             ChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeee
Confidence            3444567778888899874 78888899999998776654333      33334567799999999874

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.93  E-value=0.016  Score=37.16  Aligned_cols=52  Identities=12%  Similarity=0.325  Sum_probs=28.6

Q ss_pred             cCeEEEEEEeecCC-----CCeEEEeeCCEEec--CC--C------------------eEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYP-----HPILYWAKDGEIVV--ND--E------------------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p-----~~~~~W~~~g~~~~--~~--~------------------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+++.|.|.+....     ...|.|.++|..+.  .+  .                  ...|..+... .-.|+|+|+|+
T Consensus        27 N~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~-a~~GnYTCeVt  105 (130)
T PF08204_consen   27 NDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSD-AVEGNYTCEVT  105 (130)
T ss_dssp             -SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHH-HH-EEEEEEEE
T ss_pred             CCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchh-ccccceEEEEE
Confidence            67889999985421     22499999987653  11  1                  1224444332 33799999984

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=95.91  E-value=0.044  Score=33.30  Aligned_cols=22  Identities=14%  Similarity=0.274  Sum_probs=18.4

Q ss_pred             CeEEEEEEe-ecCCCCeEEEeeC
Q psy15206        180 HDMDLDCHI-EAYPHPILYWAKD  201 (232)
Q Consensus       180 ~~~~l~C~~-~~~p~~~~~W~~~  201 (232)
                      ....+.|.+ .|.|.+.|.|+++
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~   38 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSST   38 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcC
Confidence            457899986 5788889999997

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.84  E-value=0.075  Score=32.31  Aligned_cols=60  Identities=18%  Similarity=0.310  Sum_probs=36.9

Q ss_pred             eecCCcEEEEeeecc-CCC--CeEEEEeCCeeeCCCCcEEe---------eCCeEEECCCCCCCCe-EEEEEeEe
Q psy15206         86 AKEGQSVQLECHAEG-HPI--PTISWRRENNAILPNGQTIF---------TGSTLQIPRITKEDRG-AYYCVAQN  147 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~-~~~--~~~~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~~~g-~y~C~~~~  147 (232)
                      +..|+.+++.|.+.+ .|.  ..+.|++....+... .+..         ....+++... .+|.| .|.|.+.-
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~-~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L   84 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK-SFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKL   84 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceeccc-ccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEE
Confidence            357999999999976 444  458898754433211 1111         1134555543 66666 99999874

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA03042 CD47-like protein; Provisional

Probab=95.71  E-value=0.083  Score=38.12  Aligned_cols=60  Identities=22%  Similarity=0.392  Sum_probs=39.6

Q ss_pred             CCcEEEEeeeccC-----CCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         89 GQSVQLECHAEGH-----PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        89 g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ++++.+.|.....     ..-.+.|..++..+......  +..+|.+.... .-.|+|+|++.+....
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~~-~l~GNYTCEv~~l~n~   95 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFSK-NLSGNYTCEAINKFNK   95 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEeccc-cCCCceeEEEeecccC
Confidence            7889999998542     34469999998876543332  22455554333 3479999999875443

>PHA03042 CD47-like protein; Provisional

Probab=95.63  E-value=0.046  Score=39.38  Aligned_cols=52  Identities=12%  Similarity=0.357  Sum_probs=33.8

Q ss_pred             cCeEEEEEEeecC-----CCCeEEEeeCCEEecC--C-CeEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAY-----PHPILYWAKDGEIVVN--D-EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~-----p~~~~~W~~~g~~~~~--~-~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+++.+.|.+..-     ....+.|..+|..+..  + +...+..+ -...-.|+|+|+|+
T Consensus        31 N~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~-f~~~l~GNYTCEv~   90 (286)
T PHA03042         31 NKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFN-FSKNLSGNYTCEAI   90 (286)
T ss_pred             CceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEe-ccccCCCceeEEEe
Confidence            6778999998543     2234999999987542  2 22333333 34466899999985

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.62  E-value=0.0083  Score=38.39  Aligned_cols=71  Identities=17%  Similarity=0.322  Sum_probs=37.5

Q ss_pred             cCCcEEEEeeeccC-----CCCeEEEEeCCeeeCC---CCcEE--------------eeCCeEEECCCCCCCCeEEEEEe
Q psy15206         88 EGQSVQLECHAEGH-----PIPTISWRRENNAILP---NGQTI--------------FTGSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~---~~~~~--------------~~~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      =++.+.|.|.+...     +...+.|..++..+..   .....              ..+.+|.+.....- .|.|+|.+
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV  104 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV  104 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence            37889999998651     2235999998877531   11111              01124666554333 79999999


Q ss_pred             EeCCCCceeeEEEEE
Q psy15206        146 QNGIGRGARRKIEVK  160 (232)
Q Consensus       146 ~~~~~~~~~~~~~l~  160 (232)
                      ...... ....+.|.
T Consensus       105 t~~~~e-ge~~i~Lk  118 (130)
T PF08204_consen  105 TELSRE-GETTIELK  118 (130)
T ss_dssp             EETTEE-EEEEEEEE
T ss_pred             EecCCC-ceEEEEEE
Confidence            876443 33344443

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=95.56  E-value=0.52  Score=36.24  Aligned_cols=117  Identities=18%  Similarity=0.268  Sum_probs=68.8

Q ss_pred             eEeecCCcEEEEeeecc--CCC-CeEEEEeCCeeeCC-----------------CCcEE----------eeCCeEEECCC
Q psy15206         84 SVAKEGQSVQLECHAEG--HPI-PTISWRRENNAILP-----------------NGQTI----------FTGSTLQIPRI  133 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~--~~~-~~~~W~~~~~~~~~-----------------~~~~~----------~~~~~l~i~~~  133 (232)
                      ..+..|..+.+.|...-  ... ..+.|+..|-++.+                 ...+.          ...++|+|.++
T Consensus       274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            44556999999998743  222 35889875533211                 11111          12468999999


Q ss_pred             CCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecC--CCCeEEEeeCCEEec
Q psy15206        134 TKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY--PHPILYWAKDGEIVV  206 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~~~W~~~g~~~~  206 (232)
                      ..+..|.|.|.+..+... ......+.|.....+  .   ...+......+.|-+-+.  .++.+.|.-+|....
T Consensus       354 ~I~N~GCY~~~a~~g~~~-~ec~~Cl~V~d~V~f--~---W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~  422 (500)
T PHA02914        354 HINNAGCYEAQAFMGKFK-EECRHCFKVADHVFF--K---WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG  422 (500)
T ss_pred             EEEcCCceEEEEecCcch-hhhhhheEeccEEEE--E---EEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence            999999999999876322 222223333221111  1   111223456788987444  455799999886643

>PHA03271 envelope glycoprotein C; Provisional

Probab=94.83  E-value=0.21  Score=38.42  Aligned_cols=79  Identities=16%  Similarity=0.321  Sum_probs=51.6

Q ss_pred             CeEEECCCCCCCCeEEEEEeEeCCCCc-eeeEEEEEEE-eccEEEeccceeeeeccCeEEEEEEeecCCCC---eEEEee
Q psy15206        126 STLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVE-FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAK  200 (232)
Q Consensus       126 ~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~  200 (232)
                      -.+.|.++...+.|.|.-...+..... ..+.+.+.+. -+|.+.+.+.  .+-.|+.....|.+..+.++   .+.|++
T Consensus       207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~  284 (490)
T PHA03271        207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQ  284 (490)
T ss_pred             eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            368899999999995543333332221 2223333333 3555666554  35689999999998776665   499999


Q ss_pred             CCEEec
Q psy15206        201 DGEIVV  206 (232)
Q Consensus       201 ~g~~~~  206 (232)
                      ||..+.
T Consensus       285 nG~~V~  290 (490)
T PHA03271        285 NGNIAT  290 (490)
T ss_pred             CCcccc
Confidence            997764

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.60  E-value=0.14  Score=38.60  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=24.0

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCe--EEEeeC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI--LYWAKD  201 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~W~~~  201 (232)
                      .+|.+.+....   ..+ .++|+|.|.|+.+..  +.|.||
T Consensus       202 vpP~V~Vt~k~---~~~-~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        202 VTPTVKVTGEE---LGD-NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CCCceEEeccc---CCC-CceEEEEEEeEeCCccEEEEEec
Confidence            56666553221   122 579999999987664  789999

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.51  E-value=0.49  Score=29.13  Aligned_cols=38  Identities=24%  Similarity=0.342  Sum_probs=29.2

Q ss_pred             eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206        124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus       124 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      .+..|.|..++..|+|.|.-++++..|..-.+.+.+.|
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            45689999999999999999999988886555555544

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>TIGR00864 PCC polycystin cation channel protein

Probab=94.30  E-value=5.8  Score=38.90  Aligned_cols=171  Identities=13%  Similarity=0.079  Sum_probs=98.1

Q ss_pred             cceEeecCCeEEEEEEecCCCCCeEEEEeCcEe---------------eeeEEEEeeee--------cCceeecCCcEEe
Q psy15206         21 QLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR---------------LGRLHLAIPYT--------SPEAQVDTPPVIL   77 (232)
Q Consensus        21 ~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~---------------~~~~~~~~~~~--------~~~l~v~~~p~~~   77 (232)
                      .+..+..|+.|+|.-.....+...++|...+..               .|.|...+.-.        ...+.|..+-.-.
T Consensus      1705 S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~tHtf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~GL 1784 (2740)
T TIGR00864      1705 SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFMSHSFPSAGLHLVTMKAFNELGSANASEEVDVQEPISGL 1784 (2740)
T ss_pred             cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCceEEEccCCceEEEEEEEEccccccceeEEEEEEeccccc
Confidence            344567799999998878778999999984321               12333322111        3333333322111


Q ss_pred             cC---CCCce-EeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEe--EeCCCC
Q psy15206         78 NN---SPQLS-VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVA--QNGIGR  151 (232)
Q Consensus        78 ~~---~~~~~-~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~--~~~~~~  151 (232)
                      ..   .+... .+..|..+.|.-...........|..++.....       ...   ......+.|.|.-.+  .|..+.
T Consensus      1785 ~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~-------gk~---v~~Tf~~aG~ytV~L~AsN~vs~ 1854 (2740)
T TIGR00864      1785 KIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKM-------GKH---ACMTFPDAGTFAIRLNASNAVSG 1854 (2740)
T ss_pred             eEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccc-------cce---eEEecCCCeEEEEEEEEEcccCc
Confidence            10   11111 233466666666544333446778765432111       000   114566889998775  455544


Q ss_pred             ceeeEEEEEEEeccE-EEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCC
Q psy15206        152 GARRKIEVKVEFAPI-VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG  202 (232)
Q Consensus       152 ~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g  202 (232)
                       ......+.|+.++. +...........|+.+++.+.........+.|..++
T Consensus      1855 -~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864      1855 -KSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGG 1905 (2740)
T ss_pred             -ceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCC
Confidence             45566777777663 344455556778999999998877777889998753

Note: this model has been restricted to the amino half because for technical reasons.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=93.98  E-value=0.13  Score=37.00  Aligned_cols=48  Identities=19%  Similarity=0.240  Sum_probs=35.3

Q ss_pred             CCCeEEEEeCCeeeCCCC-cEE-eeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206        102 PIPTISWRRENNAILPNG-QTI-FTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       102 ~~~~~~W~~~~~~~~~~~-~~~-~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ..|.+.|..+++...... ... ...+.|.+.+....++|.|+|......
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            357899998766554333 322 346789999999999999999987543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA02633 hypothetical protein; Provisional

Probab=93.97  E-value=0.071  Score=29.09  Aligned_cols=22  Identities=9%  Similarity=0.318  Sum_probs=16.9

Q ss_pred             CeEEEEEeccccCCceEEEEec
Q psy15206        209 EYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       209 ~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      ....+.+.++..+|+|.|.|.+
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~   37 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCIT   37 (63)
T ss_pred             ccccEEEeccccccCcEEEEEE
Confidence            4445566677889999999986

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=93.24  E-value=2.1  Score=30.20  Aligned_cols=118  Identities=16%  Similarity=0.199  Sum_probs=61.3

Q ss_pred             eEEEEeCCeeeCCCCcE----------EeeCCeEEEC-CCCCCCCeEEEEEeEeCCCCce----eeEEEEEEEeccEEEe
Q psy15206        105 TISWRRENNAILPNGQT----------IFTGSTLQIP-RITKEDRGAYYCVAQNGIGRGA----RRKIEVKVEFAPIVTV  169 (232)
Q Consensus       105 ~~~W~~~~~~~~~~~~~----------~~~~~~l~i~-~~~~~~~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~  169 (232)
                      .+.|+.+|..+......          ...-+.|.+. .......-..+|.+.-......    ++.....|..+|.+.+
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv   87 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV   87 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence            58899988866422110          1112355552 2233334578999875433222    2333445566676655


Q ss_pred             ccceeeeeccCeEEEEEEeecCCC--CeEEEeeCCEEec-------------CCCeEEEEEeccccCCce--EEEEec
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDGEIVV-------------NDEYHSISNFGTSEGTTG--SLQCKV  230 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g~~~~-------------~~~~~~~~~~~~~~~d~g--~Y~C~~  230 (232)
                      ..     ..|   ...|.+.--|.  ..++|.-++....             ..+...+..........|  +|+|++
T Consensus        88 ~F-----~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l  157 (211)
T PF02124_consen   88 RF-----EDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRL  157 (211)
T ss_pred             Ee-----cCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEE
Confidence            32     122   45577765553  4699997664321             112233333333335556  999986

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PHA03052 Hypothetical protein; Provisional

Probab=91.23  E-value=0.86  Score=25.37  Aligned_cols=35  Identities=14%  Similarity=0.432  Sum_probs=26.6

Q ss_pred             ceeeeeccCeEEEEEEee---cCCCCeEEEeeCCEEec
Q psy15206        172 TRIGQALHHDMDLDCHIE---AYPHPILYWAKDGEIVV  206 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~~---~~p~~~~~W~~~g~~~~  206 (232)
                      ..+.+..|..+++.|.+.   +...+.+.|.-|+....
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e   42 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE   42 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence            455677899999999973   23344699999998873

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=89.04  E-value=3.4  Score=24.77  Aligned_cols=66  Identities=17%  Similarity=0.387  Sum_probs=40.0

Q ss_pred             CCceEeecCCcEEEEeeeccC-----CCCeEEEEeCCeeeCCCCcEEeeC--CeEEECCCCCCCCeEEEEEeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGH-----PIPTISWRRENNAILPNGQTIFTG--STLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~--~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      ++...+..|.+++..|.....     ....+.|..++..++........+  +++++.+......-.|-|...
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~   82 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA   82 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence            444567789999999998532     334699999888655544444433  356666666655556666643

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=88.67  E-value=3.3  Score=24.22  Aligned_cols=38  Identities=21%  Similarity=0.341  Sum_probs=26.2

Q ss_pred             CeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206        104 PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus       104 ~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      +.+.|+..+...      ......+.......+|.|.+.|.+..
T Consensus        27 ~~~~l~~~~~k~------~~~~~~~~~~~~~~~d~G~w~C~a~~   64 (80)
T PF05790_consen   27 PSLFLENPGKKS------LETKKLVSTFTPTTEDSGTWVCTASD   64 (80)
T ss_dssp             EEEEEECSSCEE------EEESSEEEEESBTCGGSEEEEEEEEE
T ss_pred             hhheeeccCccc------cccceEEEEecCCCCCCEEEEEEEcC
Confidence            457776655332      23345567778889999999999953

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03052 Hypothetical protein; Provisional

Probab=88.14  E-value=1.7  Score=24.25  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=25.2

Q ss_pred             CcceEeecCCeEEEEEEec-C--CCCCeEEEEeCcE
Q psy15206         20 TQLSVAKEGQSVQLECHAE-G--HPIPTISWRRNFK   52 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~-~--~p~~~~~W~~~~~   52 (232)
                      |....+.-|..++|.|.+. +  ...+.+.|.-++.
T Consensus         4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~   39 (69)
T PHA03052          4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGM   39 (69)
T ss_pred             CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCc
Confidence            4567788999999999997 3  2366788988554

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=87.69  E-value=2  Score=32.66  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=16.8

Q ss_pred             cEEEEeeeccCCC--CeEEEEeC
Q psy15206         91 SVQLECHAEGHPI--PTISWRRE  111 (232)
Q Consensus        91 ~~~l~C~~~~~~~--~~~~W~~~  111 (232)
                      .+.|.|.+.|.-+  ..+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            5799999999444  35889998

>KOG4597|consensus

Probab=87.14  E-value=1.4  Score=34.82  Aligned_cols=70  Identities=17%  Similarity=0.259  Sum_probs=50.2

Q ss_pred             CceEeecCCcEEEEeeeccCCCCeEEEEeC---CeeeCCCCc-E-----EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIPTISWRRE---NNAILPNGQ-T-----IFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~---~~~~~~~~~-~-----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ..-.+..+++.++.|-..|.+.+.+.|.+.   +..+..... .     ..+...|.|-+....|.|.|+|.+.+..|.
T Consensus       204 a~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~  282 (560)
T KOG4597|consen  204 AEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF  282 (560)
T ss_pred             chhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence            334566789999999999999999999753   222211111 1     112346899999999999999999988775

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=86.52  E-value=5.2  Score=24.09  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=45.4

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeC--CCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL--PNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~--~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      .|....+..|.++.+.|+..-..+..+.|.-.-....  .....    ..+.+.++..  ...-.|.+.-. |....+..
T Consensus         9 ~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g~~W----~~f~LsnV~~--ds~~~C~~~C~-g~Q~~~~~   81 (91)
T PF03921_consen    9 SPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSGPQW----KAFQLSNVTE--DSSPLCFFNCS-GEQSSASA   81 (91)
T ss_dssp             ESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEETTE----EEEEEEEE-S--CEEEEEEEEET-TEEEEEEE
T ss_pred             ECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCCCcE----EEEEEEcccc--CCeEEEEEEcC-CeEEEeEE
Confidence            4666788899999999998654444456643322110  00000    1355667775  35678998865 33355677


Q ss_pred             EEEEEecc
Q psy15206        158 EVKVEFAP  165 (232)
Q Consensus       158 ~l~v~~~p  165 (232)
                      .+.|+.+|
T Consensus        82 ~ItVY~~P   89 (91)
T PF03921_consen   82 NITVYKPP   89 (91)
T ss_dssp             EEEEEB--
T ss_pred             eeEEeCCC
Confidence            77777665

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=84.98  E-value=4.7  Score=23.61  Aligned_cols=37  Identities=14%  Similarity=0.306  Sum_probs=23.0

Q ss_pred             CCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEec
Q psy15206        193 HPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       193 ~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      .+...|.-.+............. ..+..|+|...|.|
T Consensus        26 ~~~~~l~~~~~k~~~~~~~~~~~-~~~~~d~G~w~C~a   62 (80)
T PF05790_consen   26 KPSLFLENPGKKSLETKKLVSTF-TPTTEDSGTWVCTA   62 (80)
T ss_dssp             CEEEEEECSSCEEEEESSEEEEE-SBTCGGSEEEEEEE
T ss_pred             ChhheeeccCccccccceEEEEe-cCCCCCCEEEEEEE
Confidence            34577776665444333333333 34568999999998

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>KOG4597|consensus

Probab=84.04  E-value=1.2  Score=35.21  Aligned_cols=61  Identities=10%  Similarity=0.091  Sum_probs=42.2

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEee---CCEEec-----------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAK---DGEIVV-----------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~---~g~~~~-----------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +....+..+++..++|.+.|++.+.|.|.+   |+..+.           ..+.-.+-+-+.-..|+|.|+|.+.
T Consensus       203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~r  277 (560)
T KOG4597|consen  203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSAR  277 (560)
T ss_pred             cchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccc
Confidence            334456678999999999999999999975   222221           1122344555566699999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		1e-14
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		1e-13
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-13
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		7e-12
3kld_A	384	Ptprg Cntn4 Complex Length = 384		7e-12
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		2e-11
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		5e-11
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		6e-11
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		4e-10
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		5e-10
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		3e-09
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		9e-09
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		7e-08
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		8e-08
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		1e-07
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		1e-07
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		1e-07
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		2e-07
3s97_C	201	Ptprz Cntn1 Complex Length = 201		2e-07
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-06
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-05
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		1e-06
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		1e-06
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		3e-05
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-06
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		2e-04
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-04
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-06
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		2e-06
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		2e-06
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		2e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		2e-06
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		2e-06
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		4e-06
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		5e-06
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		6e-06
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		7e-06
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2v17_L	214	Structure Of The Complex Of Antibody Mn423 With A F		2e-05
1nct_A	106	Titin Module M5, N-Terminally Extended, Nmr Length		2e-05
1tnm_A	100	Tertiary Structure Of An Immunoglobulin-Like Domain		2e-05
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		2e-05
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		2e-05
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		2e-05
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		5e-05
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		1e-04
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		5e-05
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		9e-05
4hwu_A	95	Crystal Structure Of The Ig-C2 Type 1 Domain From M		6e-05
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		8e-05
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-05
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		1e-04
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		1e-04
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		2e-04
2kkq_A	116	Solution Nmr Structure Of The Ig-Like C2-Type 2 Dom		3e-04
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		3e-04
1fh5_L	213	Crystal Structure Of The Fab Fragment Of The Monocl		3e-04
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		5e-04
1egj_H	220	Domain 4 Of The Beta Common Chain In Complex With A		7e-04
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		8e-04

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 78/172 (45%), Gaps = 16/172 (9%)
Query: 35  CHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQL 94
           C A  H     S +  F +  +L+LA   T   A     P I    P  + A  GQ V L
Sbjct: 174 CLATSHM--DFSTKSVFSKFAQLNLAAEDTRLFA-----PSIKARFPAETYALVGQQVTL 226
Query: 95  ECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-- 152
           EC A G+P+P I WR+ + ++ P   T     TLQIP ++ ED G Y C A+N  GR   
Sbjct: 227 ECFAFGNPVPRIKWRKVDGSLSPQWTT--AEPTLQIPSVSFEDEGTYECEAENSKGRDTV 284
Query: 153 -ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE 203
             R  ++ + E+  +++     IG  L       C     P P + W ++GE
Sbjct: 285 QGRIIVQAQPEWLKVISDTEADIGSNLR----WGCAAAGKPRPTVRWLRNGE 332

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 70/159 (44%), Gaps = 33/159 (20%)
Query: 24  VAKEGQSVQLECHAEGHPIPTISWRR----------NFKRLGRLHLAIP---------YT 64
           +A EG+   LEC   G+P P+ +W R           +  LG  +L I          YT
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYT 291
Query: 65  ------------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRREN 112
                       S E  V  PP  LN+   L  A E   ++ EC   G P+PT++W +  
Sbjct: 292 CVVTYKNENISASAELTVLVPPWFLNHPSNL-YAYESMDIEFECAVSGKPVPTVNWMKNG 350
Query: 113 NAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
           + ++P+    I  GS L+I  + K D G Y CVA+N  G
Sbjct: 351 DVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAG 389

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 100/263 (38%), Gaps = 48/263 (18%)
Query: 13  PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRLH 58
           P+   + T+   A  G +V L+C   G P+PTI W++N + L              G L 
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180
Query: 59  L------------------AIPYTSPEAQVDTPP-------VILNNSPQLSVAKEGQSVQ 93
           +                  A   T  EA+V           +     P   +A EG+   
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV 240
Query: 94  LECHAEGHPIPTISWRRENNAILPNGQ--TIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151
           LEC   G+P P+ +W R    I    +  ++  GS L I  +T +D G Y CV       
Sbjct: 241 LECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYK-NE 299
Query: 152 GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH 211
                 E+ V   P      + +      D++ +C +   P P + W K+G++V+  +Y 
Sbjct: 300 NISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYF 359
Query: 212 SI---SN---FGTSEGTTGSLQC 228
            I   SN    G  +   G  QC
Sbjct: 360 QIVGGSNLRILGVVKSDEGFYQC 382

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA-ILPNGQTIFTGSTLQIPR 132
           P I    P+   A++G +V+LEC A G+P+PTI WRR +   I    +   +   L+IP 
Sbjct: 204 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPN 263
Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP 192
             +ED G+Y CVA+N  G+    K ++     P        I  A+   +  +C     P
Sbjct: 264 FQQEDAGSYECVAENSRGKNV-AKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRP 322
Query: 193 HPILYWAKDGE 203
            P   W K+G+
Sbjct: 323 KPTYRWLKNGD 333

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA-ILPNGQTIFTGSTLQIPR 132
           P I    P+   A++G +V+LEC A G+P+PTI WRR +   I    +   +   L+IP 
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPN 264
Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP 192
             +ED G+Y CVA+N  G+    K ++     P        I  A+   +  +C     P
Sbjct: 265 FQQEDAGSYECVAENSRGKNV-AKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRP 323
Query: 193 HPILYWAKDGE 203
            P   W K+G+
Sbjct: 324 KPTYRWLKNGD 334

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 103/248 (41%), Gaps = 45/248 (18%)
Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------------- 54
           PPVI   + Q    + G SV L+C A G+P P ISW  + K++                 
Sbjct: 429 PPVI-RQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGD 487
Query: 55  --------------GRLHLAIPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQ 93
                         G L+  I  +       S +  V   P I     +  VA  G+++ 
Sbjct: 488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVA--GETLI 545
Query: 94  LECHAEGHPIPTISWRRENNAI-LPNGQTIFTGSTLQIPRITK-EDRGAYYCVAQNGIGR 151
           + C   G+PI +I W R+N A+ +   Q +F   TL I  + +  D+  Y CVA+N  G 
Sbjct: 546 VTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605
Query: 152 GARRKIEVKVEFAPIVTVQSTRIGQA-LHHDMDLDCHIEAYPHPI-LYWAKDGEIVVNDE 209
            AR  +EV+V   P +   +   G A +   + L C +     P+ + W  DG+ +  D 
Sbjct: 606 SARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDL 665
Query: 210 YHSISNFG 217
             + S  G
Sbjct: 666 GITTSRVG 673

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 4/117 (3%)
Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG--STLQIPRITKEDRGAYYCVAQ 146
           G  + LEC A G P P I+W ++    LP+ +  F      L+I  +++ED G Y+C+A 
Sbjct: 237 GMDLLLECIASGVPTPDIAWYKKGGD-LPSDKAKFENFNKALRITNVSEEDSGEYFCLAS 295
Query: 147 NGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE 203
           N +G   R  I V+V+ AP    +   +  A   D  L C     P P + W  +GE
Sbjct: 296 NKMG-SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGE 351

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 74/172 (43%), Gaps = 16/172 (9%)
Query: 35  CHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQL 94
           C A  H I  I+ +  F +  +L LA      E      P I    P  + A  GQ V L
Sbjct: 175 CFATSH-IDFIT-KSVFSKFSQLSLAA-----EDARQYAPSIKAKFPADTYALTGQMVTL 227
Query: 95  ECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-- 152
           EC A G+P+P I WR+ + +     + + +   L I  +  ED G Y C A+N  GR   
Sbjct: 228 ECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY 285
Query: 153 -ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE 203
             R  I  + ++  ++T     IG     D+   C     P P + W +DG+
Sbjct: 286 QGRIIIHAQPDWLDVITDTEADIGS----DLRWSCVASGKPRPAVRWLRDGQ 333

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 82  QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI----LPNGQTIFTG--STLQIPRITK 135
           Q  V  EG +   E H  G P+P +SW R+   I    LP  Q  F+   + L IP +TK
Sbjct: 13  QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTK 72
Query: 136 EDRGAYYCVAQNGIGRG-ARRKIEVKVEFAP---IVTVQSTRIGQALHHDMDLDCHIEAY 191
            + G Y   A NG G+  +  ++ VK E AP   +  +QS  + Q     + L   +   
Sbjct: 73  ANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQG--SQVRLQVRVTGI 130
Query: 192 PHPILYWAKDG 202
           P P++ + +DG
Sbjct: 131 PTPVVKFYRDG 141

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 82  QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI----LPNGQTIFTG--STLQIPRITK 135
           Q  V  EG +   E H  G P+P +SW R+   I    LP  Q  F+   + L IP +TK
Sbjct: 13  QSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTK 72
Query: 136 EDRGAYYCVAQNGIGRG-ARRKIEVKVEFAP---IVTVQSTRIGQALHHDMDLDCHIEAY 191
            + G Y   A NG G+  +  ++ VK E AP   +  +QS  + Q     + L   +   
Sbjct: 73  ANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQG--SQVRLQVRVTGI 130
Query: 192 PHPILYWAKDG 202
           P P++ + +DG
Sbjct: 131 PTPVVKFYRDG 141

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWR-------------RENNAI 115
           Q D PP I+ +   L V+K G+   L C AEG P PTI W              R +  +
Sbjct: 5   QEDFPPRIVEHPSDLIVSK-GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 116 LPNGQTIFTGSTLQI--PRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS-T 172
           LP+G   F    L+I   R ++ D G Y CVA+N +G        ++V        Q+ +
Sbjct: 64  LPSGSLFF----LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPS 119
Query: 173 RIGQALHHDMDLDCH-IEAYPHPILYWAKDG 202
            +  A+     ++C     +P P + W KDG
Sbjct: 120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDG 150

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 71/166 (42%), Gaps = 15/166 (9%)
Query: 64  TSPEAQVDTP---PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ 120
           T  EA V+      ++  N+P     KEG+   + C       PTI W+ +   ++    
Sbjct: 87  TQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD 146
Query: 121 TIF---TGSTLQIPRITKEDRGAYYCVAQNGIGRGA--RRKIEVKVEFAPIVTVQSTRIG 175
             F   + + LQI  I K D G Y C  +  + RG    + I+V V   P V  + + + 
Sbjct: 147 VRFIVLSNNYLQIRGIKKTDEGTYRCEGR-ILARGEINFKDIQVIVNVPPTVQARQSIVN 205
Query: 176 QA--LHHDMDLDCHIEAYPHPILYWAKDGEIVVN----DEYHSISN 215
               L   + L C  + +P P + W KDGE + N    DE H  S+
Sbjct: 206 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSD 251

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQ 146
           EG    L C   G+P P++SW + ++A+  N +  +    +L+I  + KED G Y CVA+
Sbjct: 114 EGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAK 173
Query: 147 NGIGRGARRKIEVKVE-FA 164
           N +G    + ++++VE FA
Sbjct: 174 NSLGTAYSKLVKLEVEVFA 192

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAI-LPNGQTIFTG----------STLQIPRITKE 136
           E   V L C AEG PIP I+W+R  +      G     G          S+L I  +   
Sbjct: 14  ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 137 DRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPIL 196
           D G Y C A + IG G ++ + + +E+AP      T       + +++ C +++ P   +
Sbjct: 74  DSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132
Query: 197 YWAKD 201
           +W +D
Sbjct: 133 HWRRD 137

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAI-LPNGQTIFTG----------STLQIPRITKE 136
           E   V L C AEG PIP I+W+R  +      G     G          S+L I  +   
Sbjct: 14  ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 73
Query: 137 DRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPIL 196
           D G Y C A + IG G ++ + + +E+AP      T       + +++ C +++ P   +
Sbjct: 74  DSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASI 132
Query: 197 YWAKD 201
           +W +D
Sbjct: 133 HWRRD 137

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 27/168 (16%)
Query: 68  AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ------- 120
            Q  +P +I    P   V K+ +   L C  EG P PTI W ++   +  N +       
Sbjct: 5   GQYQSPRII--EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 121 ---TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV-----EFAPIVTVQST 172
               +F   T+Q  +  ++D G Y+CVA+N +G+   R   +++     +F   V  + T
Sbjct: 63  KDGALFFYRTMQGKK--EQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR--VEPKDT 118
Query: 173 RIGQALHHDMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
           R+ +       L+C   +  P P L W KDG  V  D+  ++S FG S
Sbjct: 119 RVAKG--ETALLECGPPKGIPEPTLIWIKDG--VPLDDLKAMS-FGAS 161

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 27/168 (16%)
Query: 68  AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ------- 120
            Q  +P +I    P   V K+ +   L C  EG P PTI W ++   +  N +       
Sbjct: 5   GQYQSPRII--EHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 121 ---TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV-----EFAPIVTVQST 172
               +F   T+Q  +  ++D G Y+CVA+N +G+   R   +++     +F   V  + T
Sbjct: 63  KDGALFFYRTMQGKK--EQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR--VEPKDT 118
Query: 173 RIGQALHHDMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
           R+ +       L+C   +  P P L W KDG  V  D+  ++S FG S
Sbjct: 119 RVAKG--ETALLECGPPKGIPEPTLIWIKDG--VPLDDLKAMS-FGAS 161

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 20/108 (18%)
Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWR-------------RENNAI 115
           Q D PP I+ +   L V+K G+   L C AEG P PTI W              R +  +
Sbjct: 5   QEDFPPRIVEHPSDLIVSK-GEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63
Query: 116 LPNGQTIFTGSTLQI--PRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
           LP+G   F    L+I   R ++ D G Y CVA+N +G        ++V
Sbjct: 64  LPSGSLFF----LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%)
Query: 86  AKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVA 145
           A  GQ+V LEC A G+P+P I WR+    +    +   +G+ L+I  I  ED G Y C A
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEA 184
Query: 146 QNGIGR 151
           +N  G+
Sbjct: 185 ENIRGK 190

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 70/183 (38%), Gaps = 45/183 (24%)
Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRL 57
           PP I+       V + G      C A G P P+I WR+N K++              G  
Sbjct: 6   PPEIIRKPQNQGV-RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 64
Query: 58  HLAI----------PY-----------TSPEAQV-----DTPPV---ILNNSPQLSVAKE 88
            L I          PY            S +A +     D  P    ++   P   V + 
Sbjct: 65  ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124
Query: 89  GQSVQLECHAEGHPIPTISWRRENNAI-LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
           G +V + C A G+P P I W +    + + N +       LQI    +ED+G Y CVA+N
Sbjct: 125 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAEN 184
Query: 148 GIG 150
            +G
Sbjct: 185 SMG 187

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG------- 125
           PP I+   PQ    + G      C A G P P+I WR+ N   +   Q+ +T        
Sbjct: 6   PPEIIRK-PQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVLEQPGGI 63
Query: 126 STLQI-PRITKEDRGAYYCVAQNGIGRGARRKIEVKV--------EFAPIVTVQSTRIGQ 176
           S L+I P     D   Y CVA+NG+G        + +         F  I     TR+ +
Sbjct: 64  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 123
Query: 177 ALHHDMDLDCHIEAYPHPILYWAKD 201
            + H + + C     P P +YW K+
Sbjct: 124 -VGHTVLMTCKAIGNPTPNIYWIKN 147

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 14/178 (7%)
Query: 65  SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---- 120
           S +  V  PP  +       + K+ +  + EC   G P   + W ++   I  + +    
Sbjct: 90  SAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS 149
Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHH 180
            + + + L++  ++ ED G Y C A N     A     +KV+  P+   +   +      
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHN-AAGSASSSTSLKVKEPPVFRKKPHPVETLKGA 208
Query: 181 DMDLDCHIEAYPHPILYWAKDG-EIVVNDEYHSIS-NFGTS-------EGTTGSLQCK 229
           D+ L+C ++  P   + W KD  E+    +Y  +S NF TS           G  QCK
Sbjct: 209 DVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 266

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 70/183 (38%), Gaps = 45/183 (24%)
Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRL 57
           PP I+       V + G      C A G P P+I WR+N K++              G  
Sbjct: 8   PPEIIRKPQNQGV-RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGIS 66
Query: 58  HLAI----------PY-----------TSPEAQV-----DTPPV---ILNNSPQLSVAKE 88
            L I          PY            S +A +     D  P    ++   P   V + 
Sbjct: 67  ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 126
Query: 89  GQSVQLECHAEGHPIPTISWRRENNAI-LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
           G +V + C A G+P P I W +    + + N +       LQI    +ED+G Y CVA+N
Sbjct: 127 GHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAEN 186
Query: 148 GIG 150
            +G
Sbjct: 187 SMG 189

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 19/145 (13%)
Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG------- 125
           PP I+   PQ    + G      C A G P P+I WR+ N   +   Q+ +T        
Sbjct: 8   PPEIIRK-PQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQSRYTVLEQPGGI 65
Query: 126 STLQI-PRITKEDRGAYYCVAQNGIGRGARRKIEVKV--------EFAPIVTVQSTRIGQ 176
           S L+I P     D   Y CVA+NG+G        + +         F  I     TR+ +
Sbjct: 66  SILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIE 125
Query: 177 ALHHDMDLDCHIEAYPHPILYWAKD 201
            + H + + C     P P +YW K+
Sbjct: 126 -VGHTVLMTCKAIGNPTPNIYWIKN 149

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 60/169 (35%), Gaps = 41/169 (24%)
Query: 26  KEGQSVQLECHAEGHPIPTISW-----------RRNFKRL-------------------- 54
           K+G+  ++ C     P P +SW              F  L                    
Sbjct: 111 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 170
Query: 55  -GRLHL--AIPYTSPEAQVDTPPVILNNSPQLSV---AKEGQSVQLECHAEGHPIPTISW 108
            GR+     I +      V+ PP I  + PQ S    A+ G+ +   C A G P P ISW
Sbjct: 171 EGRVEARGEIDFRDIIVIVNVPPAI--SMPQKSFNATAERGEEMTFSCRASGSPEPAISW 228
Query: 109 RRENNAILPNGQTIFTGST--LQIPRITKEDRGAYYCVAQNGIGRGARR 155
            R    I  N + I  GS   L +  I   D G Y C A N  G   ++
Sbjct: 229 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQ 277

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 6/131 (4%)
Query: 87  KEGQSVQLECHAEGHPIPTISW---RRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYC 143
           K+G+  ++ C     P P +SW     E   I  N   +   + LQI  I K D G Y C
Sbjct: 111 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 170
Query: 144 VAQ-NGIGRGARRKIEVKVEFAPIVTV--QSTRIGQALHHDMDLDCHIEAYPHPILYWAK 200
             +    G    R I V V   P +++  +S         +M   C     P P + W +
Sbjct: 171 EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR 230
Query: 201 DGEIVVNDEYH 211
           +G+++  +E +
Sbjct: 231 NGKLIEENEKY 241

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 60/171 (35%), Gaps = 41/171 (23%)
Query: 26  KEGQSVQLECHAEGHPIPTISW-----------RRNFKRL-------------------- 54
           K+G+  ++ C     P P +SW              F  L                    
Sbjct: 15  KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 74
Query: 55  -GRLHL--AIPYTSPEAQVDTPPVILNNSPQLSV---AKEGQSVQLECHAEGHPIPTISW 108
            GR+     I +      V+ PP I  + PQ S    A+ G+ +   C A G P P ISW
Sbjct: 75  EGRVEARGEIDFRDIIVIVNVPPAI--SMPQKSFNATAERGEEMTFSCRASGSPEPAISW 132
Query: 109 RRENNAILPNGQTIFTGST--LQIPRITKEDRGAYYCVAQNGIGRGARRKI 157
            R    I  N + I  GS   L +  I   D G Y C A N  G   ++  
Sbjct: 133 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 6/131 (4%)
Query: 87  KEGQSVQLECHAEGHPIPTISW---RRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYC 143
           K+G+  ++ C     P P +SW     E   I  N   +   + LQI  I K D G Y C
Sbjct: 15  KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 74
Query: 144 VAQ-NGIGRGARRKIEVKVEFAPIVTV--QSTRIGQALHHDMDLDCHIEAYPHPILYWAK 200
             +    G    R I V V   P +++  +S         +M   C     P P + W +
Sbjct: 75  EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR 134
Query: 201 DGEIVVNDEYH 211
           +G+++  +E +
Sbjct: 135 NGKLIEENEKY 145

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 71/191 (37%), Gaps = 41/191 (21%)
Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAI---------- 61
           P + +   +  + A+ G+ +   C A G P P ISW RN K +      I          
Sbjct: 3   PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 62  ---------PY---TSPEAQVDTPPVILNNSPQLSVAK-------EGQSVQLECHAEGHP 102
                    PY    + +A  D     L    Q  + +       E   V L C AEG P
Sbjct: 63  RNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEP 122
Query: 103 IPTISWRRENNAI-LPNGQTIFTG----------STLQIPRITKEDRGAYYCVAQNGIGR 151
           IP I+W+R  +      G     G          S+L I  +   D G Y C A + IG 
Sbjct: 123 IPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG- 181
Query: 152 GARRKIEVKVE 162
           G ++ + + +E
Sbjct: 182 GHQKSMYLDIE 192

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 4/119 (3%)
Query: 84  SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGST--LQIPRITKEDRGAY 141
           + A+ G+ +   C A G P P ISW R    I  N + I  GS   L +  I   D G Y
Sbjct: 14  ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPY 73
Query: 142 YCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK 200
            C A N  G   ++   ++V   P + +Q        +  + L C  E  P P + W +
Sbjct: 74  VCRATNKAGEDEKQAF-LQVFVQPHI-IQLKNETTYENGQVTLVCDAEGEPIPEITWKR 130

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 14/178 (7%)
Query: 65  SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---- 120
           S +  V  PP  +       + K+ +  + EC   G P   + W ++   I  + +    
Sbjct: 282 SAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS 341
Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHH 180
            + + + L++  ++ ED G Y C A N     A     +KV+  P+   +   +      
Sbjct: 342 FVESVAVLEMYNLSVEDSGDYTCEAHN-AAGSASSSTSLKVKEPPVFRKKPHPVETLKGA 400
Query: 181 DMDLDCHIEAYPHPILYWAKDG-EIVVNDEYHSIS-NFGTS-------EGTTGSLQCK 229
           D+ L+C ++  P   + W KD  E+    +Y  +S NF TS           G  QCK
Sbjct: 401 DVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 458

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI-----FTGST 127
           P V    S   + A   QSV L C A+G P PT++W ++   I            + GS 
Sbjct: 12  PSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSE 71
Query: 128 LQIPRITKEDRGAYYCVAQNGIGR 151
           L I ++ K D   Y C+A+N  G 
Sbjct: 72  LIIKKVDKSDEAEYICIAENKAGE 95

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 72/178 (40%), Gaps = 14/178 (7%)
Query: 65  SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---- 120
           S +  V  PP  +       + K+ +  + EC   G P   + W ++   I  + +    
Sbjct: 90  SAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS 149
Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHH 180
            + + + L++  ++ ED G Y C A N     A     +KV+  P+   +   +      
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHN-AAGSASSSTSLKVKEPPVFRKKPHPVETLKGA 208
Query: 181 DMDLDCHIEAYPHPILYWAKDG-EIVVNDEYHSIS-NFGTS-------EGTTGSLQCK 229
           D+ L+C ++  P   + W KD  E+    +Y  +S NF TS           G  QCK
Sbjct: 209 DVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCK 266

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 49/120 (40%), Gaps = 16/120 (13%)
Query: 47  WRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNN------------SPQLSVAKEGQSVQL 94
           WR NF R         +   +   D P V+L N              Q     EG +VQ 
Sbjct: 346 WRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQF 405
Query: 95  ECHAEGHPIPTISW---RRENNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
            C A+G P P I W   R+   +   NG+ T+F   TL++     +D G Y C+A N  G
Sbjct: 406 VCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGG 465

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---TIFTGSTLQ 129
           PP+IL      ++A +G ++ L+C A G P+P ISW +E     P      TI    TLQ
Sbjct: 8   PPIILQGPANQTLAVDGTAL-LKCKATGDPLPVISWLKE-GFTFPGRDPRATIQEQGTLQ 65
Query: 130 IPRITKEDRGAYYCVAQNGIG 150
           I  +   D G Y CVA +  G
Sbjct: 66  IKNLRISDTGTYTCVATSSSG 86

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 77  LNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP---NGQTI-FTGSTLQIPR 132
           ++  PQL V ++G++  + C A G+P P ISW ++   + P   NG+        LQI  
Sbjct: 112 IDMGPQLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIES 171
Query: 133 ITKEDRGAYYCVAQNGIG 150
             + D+G Y CVA N  G
Sbjct: 172 SEESDQGKYECVATNSAG 189

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 10/131 (7%)
Query: 77  LNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI-------LPNGQTIFTGSTLQ 129
           L  +P      +GQ V+L C  EG   P I W ++   +       +P  +  + G  L 
Sbjct: 5   LMGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG-FLS 63
Query: 130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIE 189
           +  + + D G Y+C  ++G      + + + VE  P  TV+   +    +    L C   
Sbjct: 64  LKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAV 123
Query: 190 AYPHP--ILYW 198
             P P  I++W
Sbjct: 124 GPPEPVTIVWW 134

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 8/136 (5%)
Query: 87  KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS----TLQIPRITKEDRGAYY 142
           K G++ QL C   G P+P I W R    ++ + +   +      TL +    +ED G Y 
Sbjct: 20  KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYT 79
Query: 143 CVAQNGIGR---GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWA 199
           C+A N +G     ++  ++   +F P   ++    G A+   + L       P P + W 
Sbjct: 80  CIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYG-AVGSTLRLHVMYIGRPVPAMTWF 138
Query: 200 KDGEIVVNDEYHSISN 215
              +++ N E  +I N
Sbjct: 139 HGQKLLQNSENITIEN 154

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 71/189 (37%), Gaps = 52/189 (27%)
Query: 10  DTPPVILN---NSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAI----- 61
           D+ PV +    + T LS    G      C A G P P I+W +  K++      +     
Sbjct: 4   DSKPVFIKVPEDQTGLS----GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDD 59
Query: 62  ----------------------PYTSPEAQVDT------------PPVI--LNNSPQLSV 85
                                   T+   +++T            PP    ++  PQL V
Sbjct: 60  GAGSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKV 119
Query: 86  AKEGQSVQLECHAEGHPIPTISWRRENNAILP---NGQTI-FTGSTLQIPRITKEDRGAY 141
            ++ ++  + C A G+P P ISW ++   + P   NG+        LQI    + D+G Y
Sbjct: 120 VEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKY 179
Query: 142 YCVAQNGIG 150
            CVA N  G
Sbjct: 180 ECVATNSAG 188

>pdb|2V17|L Chain L, Structure Of The Complex Of Antibody Mn423 With A Fragment Of Tau Protein Length = 214

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 23/151 (15%)
Query: 75  VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRE-----NNAILPNGQTI------- 122
           V +  SP    A  G+++ + C A       ++W RE     N  ++ +G T+       
Sbjct: 2   VQITQSPSYLAASPGETITINCRASKSIRKFLAWYREKPGKTNKLLIYSGSTLQSGTPSR 61
Query: 123 FTGS------TLQIPRITKEDRGAYYCVAQNG--IGRGARRKIEVK-VEFAPIVTVQSTR 173
           F+GS      TL I R+  ED   YYC   N   +  GA  K+E+K  + AP V++    
Sbjct: 62  FSGSGSGTDFTLTISRLEPEDFAMYYCQQHNDYPLTFGAGTKLELKRADAAPTVSIFPPS 121
Query: 174 IGQALHHDMDLDCHI-EAYPHPI-LYWAKDG 202
             Q       + C +   YP  I + W  DG
Sbjct: 122 SEQLTSGGASVVCFLNNFYPKDINVKWKIDG 152

>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr Length = 106

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ----TIFTGSTLQIPRITKE 136
           P+     EG+S +  C  +G P+PT++W R+   +  + +    T    ST +I  +   
Sbjct: 21  PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQAS 80
Query: 137 DRGAYYCVAQNGIGR 151
           D G Y  V +N  G+
Sbjct: 81  DEGNYSVVVENSEGK 95

>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From The Muscle Protein Titin: A New Member Of The I Set Length = 100

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ----TIFTGSTLQIPRITKE 136
           P+     EG+S +  C  +G P+PT++W R+   +  + +    T    ST +I  +   
Sbjct: 15  PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQAS 74
Query: 137 DRGAYYCVAQNGIGR 151
           D G Y  V +N  G+
Sbjct: 75  DEGNYSVVVENSEGK 89

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 35/152 (23%)
Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAILP-------------------NGQTIFTGST- 127
           E +SV L C A+      ++W +     LP                      T+F+ ST 
Sbjct: 563 EQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTN 622
Query: 128 ----LQIPRITKEDRGAYYCVAQNGIGRGAR---RKIEVKVEFAPIVT----VQSTRIGQ 176
               +++   + +D+G Y C+AQ+   +      R++ V    AP +T     Q+T IG+
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGE 682
Query: 177 ALHHDMDLDCHIEAYPHPILYWAKDGEIVVND 208
           ++    ++ C     P P + W KD E +V D
Sbjct: 683 SI----EVSCTASGNPPPQIMWFKDNETLVED 710

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 77  LNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP---NGQTI-FTGSTLQIPR 132
           ++  PQL V +  ++  + C A G+P P I+W ++   + P   NG+        LQI  
Sbjct: 111 IDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 133 ITKEDRGAYYCVAQN--GIGRGARRKIEVKVE-FAPIVTVQSTRIGQALHHDMDLDCHIE 189
             + D+G Y CVA N  G+   +   + V+V+  AP  ++           ++++ C   
Sbjct: 171 SEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAV 230
Query: 190 AYPHPILYWAKDGE 203
             P P + W +  E
Sbjct: 231 GSPMPYVKWMQGAE 244

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--GSTLQIPRITKEDRGAYYCVAQ 146
           G+S+++ C A G+P P I W ++N  ++ +   +       L I R+ KED G Y C A 
Sbjct: 25  GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQAC 84
Query: 147 NGIG 150
           + +G
Sbjct: 85  SVLG 88

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 63/170 (37%), Gaps = 45/170 (26%)
Query: 13  PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDT 72
           P ++    +L VA    ++ L C A+G P P+  W +  +   R   A+       QV  
Sbjct: 221 PALVQKPLELMVA---HTISLLCPAQGFPAPSFRWYKFIEGTTRKQ-AVVLNDRVKQVSG 276
Query: 73  PPVI--------------LNNS---------------------PQLSVAKEGQSVQLECH 97
             +I              +NNS                     P       G+     C 
Sbjct: 277 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 336
Query: 98  AEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
             G+PI T+SW ++  AI   G    + S L+I  + KED+G Y C  +N
Sbjct: 337 YTGNPIKTVSWMKDGKAI---GH---SESVLRIESVKKEDKGMYQCFVRN 380

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 23/166 (13%)
Query: 55  GRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRR---- 110
           GRL +  P +S   +    P ++    +L VA    ++ L C A+G P P+  W +    
Sbjct: 205 GRLVITEPISSSAPRT---PALVQKPLELMVA---HTISLLCPAQGFPAPSFRWYKFIEG 258
Query: 111 --ENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT 168
                A++ N +      TL I     ED G Y CV  N +G G   +  + V  AP+  
Sbjct: 259 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVT-APLSA 316
Query: 169 -----VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE 209
                 Q+   G+         C     P   + W KDG+ + + E
Sbjct: 317 KIDPPTQTVDFGRP----AVFTCQYTGNPIKTVSWMKDGKAIGHSE 358

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 63/170 (37%), Gaps = 45/170 (26%)
Query: 13  PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDT 72
           P ++    +L VA    ++ L C A+G P P+  W +  +   R   A+       QV  
Sbjct: 215 PALVQKPLELMVA---HTISLLCPAQGFPAPSFRWYKFIEGTTRKQ-AVVLNDRVKQVSG 270
Query: 73  PPVI--------------LNNS---------------------PQLSVAKEGQSVQLECH 97
             +I              +NNS                     P       G+     C 
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 330
Query: 98  AEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
             G+PI T+SW ++  AI   G    + S L+I  + KED+G Y C  +N
Sbjct: 331 YTGNPIKTVSWMKDGKAI---GH---SESVLRIESVKKEDKGMYQCFVRN 374

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 23/166 (13%)
Query: 55  GRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRR---- 110
           GRL +  P +S   +    P ++    +L VA    ++ L C A+G P P+  W +    
Sbjct: 199 GRLVITEPISSSAPRT---PALVQKPLELMVA---HTISLLCPAQGFPAPSFRWYKFIEG 252
Query: 111 --ENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT 168
                A++ N +      TL I     ED G Y CV  N +G G   +  + V  AP+  
Sbjct: 253 TTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVT-APLSA 310
Query: 169 -----VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE 209
                 Q+   G+         C     P   + W KDG+ + + E
Sbjct: 311 KIDPPTQTVDFGRP----AVFTCQYTGNPIKTVSWMKDGKAIGHSE 352

>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse Fibroblast Growth Factor Receptor 2 (Fgfr2) [nysgrc-005912] Length = 95

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGA 140
           P+  V   G+S++L+C  +   +  ISW ++   + PN +T+  G  LQI   T  D G 
Sbjct: 8   PEAYVVAPGESLELQCMLKDAAV--ISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGL 65
Query: 141 YYCVA 145
           Y C A
Sbjct: 66  YACTA 70

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 46/186 (24%)
Query: 10  DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------G 55
           ++PPV +       +   G      C A G P P ++W +  K++              G
Sbjct: 4   ESPPVFIKKPVD-QIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 56  RLHLAIPYTSPE-------------------------AQVDTPPVI--LNNSPQLSVAKE 88
            +    P  +P                           +   PP    ++  PQL V + 
Sbjct: 63  AVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVER 122
Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILP---NGQTI-FTGSTLQIPRITKEDRGAYYCV 144
            ++  + C A G+P P I+W ++   + P   NG+        LQI    + D+G Y CV
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYECV 182
Query: 145 AQNGIG 150
           A N  G
Sbjct: 183 ASNSAG 188

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 59/165 (35%), Gaps = 50/165 (30%)
Query: 35  CHAEGHPIPTISWRRNFKRLGRLHLAI--------------PYTSPEAQVDTPPVILNN- 79
           C A G P P I W +  K++      +              P  +P  +     V  NN 
Sbjct: 28  CQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNV 87
Query: 80  --------------------------SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE-- 111
                                      PQL V +  ++  + C A G+P P I+W ++  
Sbjct: 88  GEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFL 147
Query: 112 ------NNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
                 NN  +   ++   G+ LQI +  + D+G Y CVA N  G
Sbjct: 148 PVDTSNNNGRIKQLRSESIGA-LQIEQSEESDQGKYECVATNSAG 191

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 31/152 (20%)
Query: 71  DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------ 124
           + PP  +   P+  +   G      C A G P P ++W ++   +  N Q   T      
Sbjct: 4   EEPPRFIKE-PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV--NSQRFETIEFDES 60
Query: 125 -GSTLQI-PRITKEDRGAYYCVAQNGIGR-GARRKIEV-----------KVEFAP-IVTV 169
            G+ L+I P  T  D   Y CVAQN +G      K+ V            ++  P +  V
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD 201
           + TR    L       C     P P + W KD
Sbjct: 121 ERTRTATML-------CAASGNPDPEITWFKD 145

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 57/152 (37%), Gaps = 31/152 (20%)
Query: 71  DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------ 124
           + PP  +   P+  +   G      C A G P P ++W ++   +  N Q   T      
Sbjct: 4   EEPPRFIKE-PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV--NSQRFETIEFDES 60
Query: 125 -GSTLQI-PRITKEDRGAYYCVAQNGIGR-GARRKIEV-----------KVEFAP-IVTV 169
            G+ L+I P  T  D   Y CVAQN +G      K+ V            ++  P +  V
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD 201
           + TR    L       C     P P + W KD
Sbjct: 121 ERTRTATML-------CAASGNPDPEITWFKD 145

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIP 131
           T P+     P       G+     C   G+PI T+SW ++  AI        + S L+I 
Sbjct: 308 TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIG------HSESVLRIE 361
Query: 132 RITKEDRGAYYCVAQN 147
            + KED+G Y C  +N
Sbjct: 362 SVKKEDKGMYQCFVRN 377

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG-STLQIPRITKEDRGAYYCVAQ 146
           EGQ   L+C   G P+P I+W      I     T   G + L I     ED G Y C+A+
Sbjct: 25  EGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAE 84
Query: 147 NGIGR 151
           N +G+
Sbjct: 85  NALGQ 89

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 82  QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
           ++ V K+GQ V + C   G P P + W   N   L  G+   T S L I  +   D+G Y
Sbjct: 317 KVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKGVKNGDKGYY 375
Query: 142 YCVAQN 147
            C A N
Sbjct: 376 GCRATN 381

>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of Human Myotilin. Northeast Structural Genomics Target Hr3158 Length = 116

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----TGS-TLQIPRIT 134
           PQ     EG SV+LEC     P P + W+R N  +  N   I      TG  TL I  + 
Sbjct: 22  PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVN 81
Query: 135 KEDRGAYYCVAQNGIG 150
           K+D G Y   A N  G
Sbjct: 82  KKDAGWYTVSAVNEAG 97

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 31/233 (13%)
Query: 26  KEGQSVQLECHAEGHPIPTISWRRN--FKRLGRLHLAIP---------YTSPEAQVDT-- 72
           + G+++ L CHA  +P    SW  N  F++  +  L IP         YT      DT  
Sbjct: 216 RSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ-ELFIPNITVNNSGSYTCQAHNSDTGL 274
Query: 73  -------------PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISW-RRENNAILPN 118
                        PP     S   +  ++  +V L C  E      + W   ++  + P 
Sbjct: 275 NRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPR 334
Query: 119 GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIV-TVQSTRIGQA 177
            Q      TL +  +T+ D G Y C  QN +       + + V + P   T+  +     
Sbjct: 335 LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYR 394
Query: 178 LHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
              ++ L CH  + P     W  DG I  + +   ISN   +E  +G   C+ 
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNI--TEKNSGLYTCQA 445

>pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment Of The Monoclonal Antibody Mak33 Length = 213

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 23/151 (15%)
Query: 75  VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN------GQTI------ 122
           ++L  SP       G+SV L C A       + W ++ +   P        Q+I      
Sbjct: 2   IVLTQSPATLSVTPGESVSLSCRASQSISNNLHWYQQKSHESPRLLIKYASQSISGIPSR 61
Query: 123 FTGS------TLQIPRITKEDRGAYYCVAQNG--IGRGARRKIEVK-VEFAPIVTVQSTR 173
           F+GS      TL I  +  ED G YYC   N   +  GA  K+E+K  + AP V++    
Sbjct: 62  FSGSGSGTDFTLSINSVETEDFGMYYCQQSNSWPLTFGAGTKLELKRADAAPTVSIFPPS 121
Query: 174 IGQALHHDMDLDCHI-EAYPHPI-LYWAKDG 202
             Q       + C +   YP  I + W  DG
Sbjct: 122 SEQLTSGGASVVCFLNNFYPKDINVKWKIDG 152

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI--FTGSTLQI 130
           PPVI       +VA +G  V L C A G P+PTI WR++   +      I       LQI
Sbjct: 8   PPVIRQGPVNQTVAVDGTFV-LSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66
Query: 131 PRITKEDRGAYYCVAQNGIGRGARRK-IEVKVEFAPIVTVQSTR 173
                 D G Y C+A    G       IEV+ EF   V VQ  R
Sbjct: 67  RYAKLGDTGRYTCIASTPSGEATWSAYIEVQ-EFG--VPVQPPR 107

>pdb|1EGJ|H Chain H, Domain 4 Of The Beta Common Chain In Complex With An Antibody Length = 220

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 36/150 (24%)
Query: 85  VAKEGQSVQLECHAEGHPIPT--ISWRRENNA--------ILP-NGQTIF---------- 123
           + K G SV++ C A G+      + W + ++         I P NG T++          
Sbjct: 11  LVKPGTSVKMSCKASGYTFTDYYMKWVKHSHGKSLEWIGDINPSNGGTLYNQKFKGKATL 70
Query: 124 ------TGSTLQIPRITKEDRGAYYCVAQNGI-------GRGARRKIEVKVEFAPIVTVQ 170
                 + +++Q+ R+T ED   YYC   +GI       G+G    +      AP V   
Sbjct: 71  TVDKSSSTASMQLSRLTSEDSAVYYCSRGDGIHGGFAYWGQGTTVTVSSAKTTAPSVYPL 130
Query: 171 STRIGQALHHDMDLDCHIEAY-PHPI-LYW 198
           +   G      + L C ++ Y P P+ L W
Sbjct: 131 APVCGDTTGSSVTLGCLVKGYFPEPVTLTW 160

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-----TIFTGSTL 128
           PVI+     L+V  EG + +L+C A    + ++SW   N  ++ +G       + +  TL
Sbjct: 342 PVIVEPPADLNVT-EGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 129 QIPRITKEDRGAYYCVAQNGIG 150
               +T +D G Y C+  N +G
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVG 421

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-45
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-25
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-11
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-43
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	6e-32
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-40
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-37
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-36
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-36
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	5e-28
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-39
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-36
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-30
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-39
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-34
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-32
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-24
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-38
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-36
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-36
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-36
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-28
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-25
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-25
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-08
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	6e-36
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-35
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-31
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-31
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-24
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-19
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-36
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-35
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-35
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-32
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-29
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-21
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-35
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-27
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-24
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-35
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-30
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-34
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-32
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-31
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-27
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-34
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-33
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-32
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-32
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-32
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-28
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	7e-32
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	9e-26
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-31
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-22
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-31
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-31
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-28
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-24
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-31
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-27
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-24
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-05
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-30
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-30
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-30
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-22
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	5e-30
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-24
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-30
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-25
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-30
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-16
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-14
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-10
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	4e-29
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-25
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-23
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-29
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	5e-27
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	8e-29
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-19
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-28
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-28
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-28
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-28
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-28
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-25
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-07
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-28
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-25
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-24
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-23
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-22
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-28
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-18
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-06
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-28
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-26
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-28
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-27
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-22
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-18
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-04
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-27
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-24
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-27
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-25
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-27
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-26
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-27
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-26
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-23
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-19
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-27
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-26
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	7e-27
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-19
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-26
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-22
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-26
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-26
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-24
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-19
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-26
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-23
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-26
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	9e-24
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	1e-24
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	6e-23
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-24
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	5e-14
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	5e-24
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-19
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-23
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	8e-16
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-23
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	9e-23
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	4e-23
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	8e-23
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-08
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-22
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-22
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	6e-21
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	5e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-22
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-16
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	8e-13
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-10
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-22
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	2e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-22
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-18
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-10
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	8e-22
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	5e-07
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-21
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-12
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-21
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-19
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	7e-14
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-21
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-21
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	5e-21
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-21
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-18
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-21
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-17
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-14
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-21
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	5e-21
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-18
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	5e-21
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	8e-21
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-20
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	5e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-20
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-17
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-20
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-15
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	4e-20
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-04
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-19
2ens_A	96	Advanced glycosylation END product-specific recept	4e-19
2ens_A	96	Advanced glycosylation END product-specific recept	4e-09
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	5e-19
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	8e-19
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-19
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-14
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-18
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-18
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	5e-15
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-18
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-18
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	5e-06
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-18
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-07
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-18
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-18
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	3e-18
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-18
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	5e-18
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	6e-18
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-18
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-18
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	9e-18
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-17
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-04
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-17
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-17
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	5e-17
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-17
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-04
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	6e-17
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-05
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	6e-17
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-15
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-16
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	8e-14
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-04
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	1e-16
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	9e-16
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-15
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	5e-04
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-15
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	9e-06
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-15
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	7e-06
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	7e-15
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	7e-07
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	8e-15
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-14
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-09
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-14
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	5e-14
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-12
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	5e-13
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	3e-11
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-12
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-12
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-12
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-11
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-12
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	9e-09
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-12
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	8e-12
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-11
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	3e-04
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-11
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	3e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-11
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	4e-11
1he7_A	126	High affinity nerve growth factor receptor; transf	5e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	6e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	7e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	8e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-08
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	7e-11
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	8e-11
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	5e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	8e-11
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	9e-11
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	9e-11
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	1e-07
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-10
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-10
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-10
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-08
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	5e-07
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-10
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	7e-10
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	4e-10
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-10
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	6e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-10
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	7e-10
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	8e-10
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	8e-10
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-09
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-05
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-09
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-08
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-09
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	2e-09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	3e-09
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-09
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	5e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-09
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	7e-09
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-08
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	2e-08
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	2e-06
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-08
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-07
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	1e-06
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	2e-07
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-07
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	1e-04
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-06
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	1e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	4e-06
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	2e-06
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	6e-06
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	7e-06
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	6e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	9e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	2e-05
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	1e-05
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	2e-05
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	2e-05
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	3e-05
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-05
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	4e-05
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	5e-05
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	2e-04
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	6e-05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	8e-05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	3e-04
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	1e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	1e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	1e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	1e-04
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	1e-04
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	2e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	2e-04
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	3e-04
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	3e-04
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	3e-04
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	3e-04
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	4e-04
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	6e-04
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	7e-04
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	8e-04

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  151 bits (383), Expect = 3e-45
 Identities = 47/243 (19%), Positives = 78/243 (32%), Gaps = 43/243 (17%)

Query: 24  VAKEGQSVQLECHAEGHP-IPTISWRR-----------------NFKRLGRLHL------ 59
               G+S    C   G      ISW                   N      L +      
Sbjct: 13  EISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANID 72

Query: 60  -AIPYT-----------SPEAQVD-TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTI 106
            A  Y                 V     ++  N+P     KEG+   + C       PTI
Sbjct: 73  DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI 132

Query: 107 SWRRENNAILPNGQ---TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVE 162
            W+ +   ++        + + + LQI  I K D G Y C  +         + I+V V 
Sbjct: 133 IWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192

Query: 163 FAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE 220
             P V  + + +    +    + L C  + +P P + W KDGE + N+E     +  + +
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252

Query: 221 GTT 223
            + 
Sbjct: 253 SSE 255

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  100 bits (250), Expect = 1e-25
 Identities = 29/132 (21%), Positives = 40/132 (30%), Gaps = 8/132 (6%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILPNGQTIFT-------GSTLQIP 131
            P       G+S    C   G      ISW   N   L   Q   +        STL I 
Sbjct: 8   VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 67

Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY 191
               +D G Y CV     G  +   + VK+    +     T        D  + C + + 
Sbjct: 68  NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127

Query: 192 PHPILYWAKDGE 203
             P + W   G 
Sbjct: 128 LPPTIIWKHKGR 139

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 61.8 bits (150), Expect = 1e-11
 Identities = 35/155 (22%), Positives = 48/155 (30%), Gaps = 57/155 (36%)

Query: 8   QVDTPPVI-LNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSP 66
            V+ PP +    S   + A  GQSV L C A+G P PT+SW ++                
Sbjct: 190 IVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD---------------- 233

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS 126
                                            G PI       E +    +       S
Sbjct: 234 ---------------------------------GEPIENEEEDDEKHIFSDD------SS 254

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
            L I  + K D   Y C+A+N  G      I +KV
Sbjct: 255 ELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLKV 288

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  147 bits (373), Expect = 1e-43
 Identities = 45/253 (17%), Positives = 87/253 (34%), Gaps = 43/253 (16%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHL 59
           PP        + +A  G+S   +CH  G     I+W ++ + +                L
Sbjct: 5   PPFFDLKPVSVDLA-LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63

Query: 60  AIPYTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHA 98
            +   +                         V  PP  +       + K+ +  + EC  
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123

Query: 99  EGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
            G P   + W ++   I  + +   +     + L++  ++ ED G Y C A N  G  A 
Sbjct: 124 GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-AS 182

Query: 155 RKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
               +KV+  P+   +   +      D+ L+C ++  P   + W KD   + + + + I 
Sbjct: 183 SSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKI- 241

Query: 215 NFGTSEGTTGSLQ 227
               SE    S+ 
Sbjct: 242 ---MSENFLTSIH 251

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  116 bits (293), Expect = 6e-32
 Identities = 35/192 (18%), Positives = 61/192 (31%), Gaps = 39/192 (20%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLH------ 58
            V  PP  +       + K+ +  + EC   G P   + W ++   +    +        
Sbjct: 94  GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES 153

Query: 59  ---LAIPYTSPE--------AQ-------------VDTPPVILNNSPQLSVAKEGQSVQL 94
              L +   S E        A              V  PPV     P      +G  V L
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK-PHPVETLKGADVHL 212

Query: 95  ECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIG 150
           EC  +G P   +SW ++   +    +         +++ I  +   D G Y C A N +G
Sbjct: 213 ECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272

Query: 151 RGARRKIEVKVE 162
                   + ++
Sbjct: 273 S-YTCVGSITLK 283

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  144 bits (366), Expect = 1e-40
 Identities = 47/254 (18%), Positives = 89/254 (35%), Gaps = 43/254 (16%)

Query: 11  TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRL---------H 58
            PP        + +A  G+S   +CH  G     I+W ++ + +   G            
Sbjct: 196 VPPFFDLKPVSVDLA-LGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 254

Query: 59  LAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSVQLECH 97
           L +   +          A              V  PP  +       + K+ +  + EC 
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 314

Query: 98  AEGHPIPTISWRRENNAILPNG----QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA 153
             G P   + W ++   I  +       + + + L++  ++ ED G Y C A N  G  A
Sbjct: 315 IGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS-A 373

Query: 154 RRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSI 213
                +KV+  P+   +   +      D+ L+C ++  P   + W KD   + + + + I
Sbjct: 374 SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKI 433

Query: 214 SNFGTSEGTTGSLQ 227
                SE    S+ 
Sbjct: 434 ----MSENFLTSIH 443

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  134 bits (340), Expect = 6e-37
 Identities = 44/257 (17%), Positives = 83/257 (32%), Gaps = 42/257 (16%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH--------- 58
            V  PP  +       + K+ +  + EC   G P   + W ++   +             
Sbjct: 286 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES 345

Query: 59  ---LAIP---------------------YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQL 94
              L +                       +S   +V  PPV     P      +G  V L
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKK-PHPVETLKGADVHL 404

Query: 95  ECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIG 150
           EC  +G P   +SW ++   +    +         +++ I  +   D G Y C A N +G
Sbjct: 405 ECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 464

Query: 151 RGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY 210
                   + ++  P    + + I   +  ++ L   IE      + W KD   +V +  
Sbjct: 465 S-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESD 523

Query: 211 HSISNFGTSEGTTGSLQ 227
           +   ++        +LQ
Sbjct: 524 NIWISY---SENIATLQ 537

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  134 bits (338), Expect = 1e-36
 Identities = 47/259 (18%), Positives = 77/259 (29%), Gaps = 48/259 (18%)

Query: 10  DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRL 57
             PP        +     G  V  EC   G     +SW ++ + L               
Sbjct: 99  KLPPSFARKLKDVHE-TLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA 157

Query: 58  HLAIPYTSPE------------------------AQVDTPPVILNNSPQLSVAKEGQSVQ 93
            L I  T                           ++ + PP      P       G+S  
Sbjct: 158 TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDL-KPVSVDLALGESGT 216

Query: 94  LECHAEGHPIPTISWRRENNAILPNG----QTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149
            +CH  G     I+W ++N  I P G      +   +TL + ++TK D G Y C A N  
Sbjct: 217 FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVA 276

Query: 150 GRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND 208
           G+      ++ V+  P  +                 +C I   P   + W KD   +   
Sbjct: 277 GK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQES 335

Query: 209 EYHSISNFGTSEGTTGSLQ 227
               +    +   +   L+
Sbjct: 336 SKFRM----SFVESVAVLE 350

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  132 bits (333), Expect = 8e-36
 Identities = 45/259 (17%), Positives = 78/259 (30%), Gaps = 50/259 (19%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHL 59
           PP  +     +     G+ + L+C  +G P   I+W +   +L                L
Sbjct: 5   PPYFIEPLEHVEA-AIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASL 63

Query: 60  AIPYTSPE------------------------AQVDTPPVILNNSPQLSVAKEGQSVQLE 95
            I                               +   PP       +      G  V  E
Sbjct: 64  VINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFAR-KLKDVHETLGFPVAFE 122

Query: 96  CHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGR 151
           C   G     +SW ++   +  +     +     +TLQI +  +   G Y C A N +G 
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182

Query: 152 GARRKIEVKV---EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND 208
            A    ++ +   E  P   ++   +  AL       CH+       + WAKD   +   
Sbjct: 183 -ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG 241

Query: 209 EYHSISNFGTSEGTTGSLQ 227
             + +    T    T +L 
Sbjct: 242 GNYKM----TLVENTATLT 256

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  110 bits (276), Expect = 5e-28
 Identities = 37/192 (19%), Positives = 61/192 (31%), Gaps = 41/192 (21%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------G 55
           +V  PPV       +    +G  V LEC  +G P   +SW ++ + L             
Sbjct: 380 KVKEPPVFRKKPHPVETL-KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENF 438

Query: 56  RLHLAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSVQL 94
              + I              A              +  PP  +           G+ VQL
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVK-KLSDISTVVGEEVQL 497

Query: 95  ECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQNGI 149
           +   EG    +++W ++   I+     I+       +TLQ  R    + G Y C  +N  
Sbjct: 498 QATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEA 557

Query: 150 GRGARRKIEVKV 161
           G        + V
Sbjct: 558 GT-QECFATLSV 568

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  138 bits (350), Expect = 3e-39
 Identities = 59/252 (23%), Positives = 93/252 (36%), Gaps = 43/252 (17%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH--------- 58
            V  P   L+  T+   A  G +V L+C   G P+PTI W++N + L  +          
Sbjct: 117 MVAGPLRFLS-QTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLP 175

Query: 59  ---LAIP---------YT-----------SPEAQVD-------TPPVILNNSPQLSVAKE 88
              L I          Y              EA+V           +     P   +A E
Sbjct: 176 SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIE 235

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGSTLQIPRITKEDRGAYYCVAQ 146
           G+   LEC   G+P P+ +W R    I    +  ++  GS L I  +T +D G Y CV  
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVT 295

Query: 147 NGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV 206
                      E+ V   P      + +      D++ +C +   P P + W K+G++V+
Sbjct: 296 YKNEN-ISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI 354

Query: 207 NDEYHSISNFGT 218
             +Y  I     
Sbjct: 355 PSDYFQIVGGSN 366

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  131 bits (331), Expect = 2e-36
 Identities = 50/262 (19%), Positives = 84/262 (32%), Gaps = 53/262 (20%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFKRL------------ 54
                   ++  +       G +V L C AE    +P I W+++   L            
Sbjct: 17  GGRRSLHFVSEPSDAVT-MRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLP 75

Query: 55  -GRLHLAIPYTSPEAQVD--------------------------TPPVILNNSPQLSVAK 87
            G L +     S   + D                           P   L+   +   A 
Sbjct: 76  NGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLS-QTESITAF 134

Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAILPNG----QTIFTGSTLQIPRITKEDRGAYYC 143
            G +V L+C   G P+PTI W++    + P        +     LQI R+   D G Y C
Sbjct: 135 MGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRC 194

Query: 144 VAQNGIGRGARRKIEVKV------EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY 197
            A+N        + EV++              + + +      D  L+C +  YP P   
Sbjct: 195 SARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFT 254

Query: 198 WAKDGE-IVVNDEYHSISNFGT 218
           W +  E I +  + +S+     
Sbjct: 255 WLRGEEVIQLRSKKYSLLGGSN 276

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  113 bits (284), Expect = 9e-30
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 35/190 (18%)

Query: 5   PESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN----------FKRL 54
            +  +      L   + +    EG+   LEC   G+P P+ +W R           +  L
Sbjct: 214 SDPGLHRQLYFLQRPSNVIAI-EGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL 272

Query: 55  GRLHLAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSVQ 93
           G  +L I   + +                       V  PP  LN  P    A E   ++
Sbjct: 273 GGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLN-HPSNLYAYESMDIE 331

Query: 94  LECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG 152
            EC   G P+PT++W +  + ++P+    I  GS L+I  + K D G Y CVA+N  G  
Sbjct: 332 FECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGN- 390

Query: 153 ARRKIEVKVE 162
           A+   ++ V 
Sbjct: 391 AQSSAQLIVP 400

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  137 bits (347), Expect = 6e-39
 Identities = 51/251 (20%), Positives = 87/251 (34%), Gaps = 44/251 (17%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRL------------ 54
           Q          +      + GQ + L C         + +W  N                
Sbjct: 97  QFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQET 156

Query: 55  GRLHLA-----------------------------IPYTSPEAQVDTPPVILNNSPQLSV 85
           G L++A                             +   +     +  P I    P+   
Sbjct: 157 GNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVP 216

Query: 86  AKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYCV 144
           A++G +V+LEC A G+P+PTI WRR +   +    +   +   L+IP   +ED G+Y CV
Sbjct: 217 AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECV 276

Query: 145 AQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI 204
           A+N  G+    K ++     P        I  A+   +  +C     P P   W K+G+ 
Sbjct: 277 AENSRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP 335

Query: 205 VVNDEYHSISN 215
           ++  +   I  
Sbjct: 336 LLTRDRIQIEQ 346

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  124 bits (313), Expect = 5e-34
 Identities = 48/254 (18%), Positives = 78/254 (30%), Gaps = 49/254 (19%)

Query: 11  TPPVILN--NSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GR 56
           + PV +   +     +  E + V+L C  +G+P P I W+ N   +            G 
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63

Query: 57  LHLAIP--------YT-----------SPEA--QVDTPPVILNNSPQLSVAKEGQSVQLE 95
           L +  P        Y            S EA  Q          +      + GQ + L 
Sbjct: 64  LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLL 123

Query: 96  CHA-EGHPIPTISWRRENNAILPNGQ--TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG 152
           C         + +W         + +         L I ++ K D G Y CV  N +   
Sbjct: 124 CGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNH 183

Query: 153 ARRKIEVKV---------EFAPIVTVQSTRIGQAL-HHDMDLDCHIEAYPHPILYWAK-D 201
                   +         E+ P + VQ      A     + L+C     P P + W + D
Sbjct: 184 KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRAD 243

Query: 202 GEIVVNDEYHSISN 215
           G+ +        SN
Sbjct: 244 GKPIARKARRHKSN 257

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  118 bits (298), Expect = 6e-32
 Identities = 47/189 (24%), Positives = 66/189 (34%), Gaps = 32/189 (16%)

Query: 3   TSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN---------FKR 53
            +     +  P I     +   A++G +V+LEC A G+P+PTI WRR           + 
Sbjct: 195 RNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH 254

Query: 54  LGRLHLAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSV 92
                L IP    E        A                  P  +            +SV
Sbjct: 255 KSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ-IINDIHVAMEESV 313

Query: 93  QLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG 152
             EC A G P PT  W +  + +L   +      TL I  +   D G Y CVA+N  G  
Sbjct: 314 FWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGV- 372

Query: 153 ARRKIEVKV 161
                E+ V
Sbjct: 373 IFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 97.2 bits (242), Expect = 7e-24
 Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 16/159 (10%)

Query: 72  TPPVILNNSPQLSV--AKEGQSVQLECHAEGHPIPTISWRRENNAI--LPNGQTIFTGST 127
           + PV +     +      E + V+L C  +G+P P I W+     +    + +      +
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGS 63

Query: 128 LQIPRITK-EDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ-----STRIGQALHHD 181
           L I    K +D G Y C+A N  G    R+ +++  +      +     S R GQ +   
Sbjct: 64  LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMV-- 121

Query: 182 MDLDCHI-EAYPHPILYWAKDGE-IVVNDEYHSISNFGT 218
             L C            W  +      ++        G 
Sbjct: 122 --LLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN 158

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  138 bits (349), Expect = 8e-38
 Identities = 51/267 (19%), Positives = 84/267 (31%), Gaps = 55/267 (20%)

Query: 4   SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH----- 58
           +       P V+      +       ++ L C A+G+P+P   W +  +   R       
Sbjct: 239 TEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLN 298

Query: 59  ---------LAIPYTSPE--------AQ-------------VDTPPVILNNSPQLSVAKE 88
                    L I     E                       V  P       P       
Sbjct: 299 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI-DPPTQTVDF 357

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148
           G+     C   G+PI T+SW ++  AI  +       S L+I  + KED+G Y C  +N 
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------SVLRIESVKKEDKGMYQCFVRND 411

Query: 149 IGRGARRKIEVKVE-------FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD 201
               A    E+K+               ++   G      + L C     P P + W  D
Sbjct: 412 RES-AEASAELKLGGRFDPPVIRQAFQEETMEPGP----SVFLKCVAGGNPTPEISWELD 466

Query: 202 GEIVVNDEYHSISNFGTSEGT-TGSLQ 227
           G+ + N++ + +  + T  G     L 
Sbjct: 467 GKKIANNDRYQVGQYVTVNGDVVSYLN 493

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  134 bits (338), Expect = 3e-36
 Identities = 60/257 (23%), Positives = 96/257 (37%), Gaps = 44/257 (17%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------- 54
                P ++  + Q    + G SV L+C A G+P P ISW  + K++             
Sbjct: 424 GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483

Query: 55  ----GRLHLAIPYTSPE--------AQ-------------VDTPPVILNNSPQLSVAKEG 89
                  +L I              A+             V   P I     +      G
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI--RQMEKKAIVAG 541

Query: 90  QSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITK-EDRGAYYCVAQN 147
           +++ + C   G+PI +I W R+N A+  N  Q +F   TL I  + +  D+  Y CVA+N
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKN 601

Query: 148 GIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIV 205
             G  AR  +EV+V   P I+          +   + L C +     P+ + W  DG+ +
Sbjct: 602 QEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAI 661

Query: 206 VNDEYHSISNFGTSEGT 222
             D   + S  G     
Sbjct: 662 SEDLGITTSRVGRRGSV 678

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  133 bits (337), Expect = 4e-36
 Identities = 55/258 (21%), Positives = 87/258 (33%), Gaps = 42/258 (16%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN---------FKRLGRLH 58
            V   P I     +      G+++ + C   G+PI +I W R+          K      
Sbjct: 523 NVYGLPYIRQMEKK--AIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGT 580

Query: 59  LAIP----------YT-------------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLE 95
           L I           YT             S E QV   P I+  + +   A+ GQ + L 
Sbjct: 581 LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLH 640

Query: 96  CHAEGHPIP-TISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQNGI 149
           C   G  +P  I W  +  AI  +     +     GS L I  +     G + C A+N  
Sbjct: 641 CSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLA 700

Query: 150 GRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE 209
           G   +    + V   P   ++ T    A   D  ++C  + +P P + W K       + 
Sbjct: 701 GH-QQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGE- 758

Query: 210 YHSISNFGTSEGTTGSLQ 227
           Y  +          G+L 
Sbjct: 759 YKDLKKSDNIRVEEGTLH 776

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  133 bits (335), Expect = 7e-36
 Identities = 52/247 (21%), Positives = 88/247 (35%), Gaps = 43/247 (17%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--GRLHLAIPYTSP 66
           V  P     +    +V   G+     C   G+PI T+SW ++ K +      L I     
Sbjct: 340 VTAPLSAKIDPPTQTVD-FGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKK 398

Query: 67  E-------------------AQVD----TPPVILNNSPQLSVAKEGQSVQLECHAEGHPI 103
           E                   A++       P ++  + Q    + G SV L+C A G+P 
Sbjct: 399 EDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPT 458

Query: 104 PTISWRRENNAILPNG---------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
           P ISW  +   I  N                S L I  +   D G Y C+A++ +G  A 
Sbjct: 459 PEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGV-AE 517

Query: 155 RKIEVKVEFAPIVTV---QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH 211
              ++ V   P +     ++   G+     + + C +  YP   + W +D   +  +   
Sbjct: 518 HSAKLNVYGLPYIRQMEKKAIVAGE----TLIVTCPVAGYPIDSIVWERDNRALPINRKQ 573

Query: 212 SISNFGT 218
            +   GT
Sbjct: 574 KVFPNGT 580

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  124 bits (313), Expect = 6e-33
 Identities = 46/279 (16%), Positives = 77/279 (27%), Gaps = 60/279 (21%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAE---GHPIPTISWRRNFKRL--------GR 56
           +         +  +  V   G S  ++C         +  +SW  + +          G+
Sbjct: 134 RAVVAQYYEADVNKEHVI-RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 192

Query: 57  LH------LAIPYTSPE--------------------------------AQVDTPPVILN 78
                   L I    PE                                     P V+  
Sbjct: 193 YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSL 252

Query: 79  NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRE------NNAILPNGQTIFTGSTLQIPR 132
               +       ++ L C A+G+P+P   W +         A++ N +      TL I  
Sbjct: 253 AKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKD 312

Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP 192
              ED G Y CV  N +G     +  + V       +                C     P
Sbjct: 313 AVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNP 371

Query: 193 HPILYWAKDGE-IVVNDEYHSISNFGTSEGTTGSLQCKV 230
              + W KDG+ I  ++    I +    +   G  QC V
Sbjct: 372 IKTVSWMKDGKAIGHSESVLRIESVKKED--KGMYQCFV 408

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  112 bits (282), Expect = 1e-28
 Identities = 43/279 (15%), Positives = 73/279 (26%), Gaps = 58/279 (20%)

Query: 3   TSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-------- 54
            +P       PV L   T           ++EC A G+P+P I W R+            
Sbjct: 29  ANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR 88

Query: 55  -----GRLHLAIP-------------YT-----------SPEAQVD-TPPVILNNSPQLS 84
                G+L                  Y            S +  V               
Sbjct: 89  QISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE 148

Query: 85  VAKEGQSVQLECHAE---GHPIPTISWRRENNAILPNGQ------TIFTGSTLQIPRITK 135
               G S  ++C         +  +SW  +       G        +     L I  +  
Sbjct: 149 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGP 208

Query: 136 ED-RGAYYCVAQNGIGRGARRKIE---------VKVEFAPIVTVQSTRIGQAL-HHDMDL 184
           ED   +Y C  ++ +    R             +      +V++    +        M L
Sbjct: 209 EDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMAL 268

Query: 185 DCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
            C  + YP P+  W K  E     +   +++       T
Sbjct: 269 LCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT 307

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  103 bits (259), Expect = 1e-25
 Identities = 42/200 (21%), Positives = 66/200 (33%), Gaps = 43/200 (21%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRL------------ 54
           QV   P I+  + +   A+ GQ + L C   G  +P  I W  + + +            
Sbjct: 614 QVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVG 673

Query: 55  -GRLHLAIPYTSPEAQ---------------------VDTPPVILNNSPQLSVAKEGQSV 92
                L I                             V  PP  +   P      +G   
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILE-PTDKAFAQGSDA 732

Query: 93  QLECHAEGHPIPTISWRRENNAILPNGQTIFTG-------STLQIPRITKEDRGAYYCVA 145
           ++EC A+G P P ++W++         + +           TL +  I K + G Y C A
Sbjct: 733 KVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEA 792

Query: 146 QNGIGRGARRKIEVKVEFAP 165
            NGIG G    I + V+   
Sbjct: 793 INGIGSGLSAVIMISVQAHH 812

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  101 bits (253), Expect = 6e-25
 Identities = 34/176 (19%), Positives = 56/176 (31%), Gaps = 14/176 (7%)

Query: 64  TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL---PNGQ 120
            +P       PV L               ++EC A G+P+P I W R +   +   P  +
Sbjct: 29  ANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR 88

Query: 121 TIFTGSTLQIPRITKEDR------GAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRI 174
            I +   L  P    ED         Y C+A+N  G    R + V+   A        + 
Sbjct: 89  QISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKE 148

Query: 175 GQALHHDMDLDCHIEAY---PHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
                +   + C I ++      ++ W  D E            +      +G L 
Sbjct: 149 HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP--SGELH 202

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARR-KIEVKVEFAPIVTVQST-RIGQALHHDMDLD 185
           + +P    +    +  VA    G            +  P+   + T RI  +     +++
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 186 CHIEAYPHPILYWAKDGEIVVND--EYHSISNFGT 218
           C     P P + W +     V D      IS+ G 
Sbjct: 61  CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 95

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  132 bits (334), Expect = 6e-36
 Identities = 44/255 (17%), Positives = 78/255 (30%), Gaps = 39/255 (15%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRL-----HLAIP 62
            V   P     S   +  + G ++ L CHA  +P    SW  +    G +      L I 
Sbjct: 376 NVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID----GNIQQHTQELFIS 431

Query: 63  YTSPE-------------------AQVD-----TPPVILNNSPQLSVAKEGQSVQLECHA 98
             + +                              P    +S      ++  +V   C  
Sbjct: 432 NITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP 491

Query: 99  EGHPIPTISWRRENNAILPNG--QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK 156
           E     T  W     ++  +   Q      TL +  +T+ D  AY C  QN +       
Sbjct: 492 EAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDP 550

Query: 157 IEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISN 215
           + + V + P    +           +++L CH  + P P   W  +G    + +   I+ 
Sbjct: 551 VTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAK 610

Query: 216 FGTSEGTTGSLQCKV 230
              +    G+  C V
Sbjct: 611 --ITPNNNGTYACFV 623

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  130 bits (327), Expect = 5e-35
 Identities = 52/251 (20%), Positives = 86/251 (34%), Gaps = 31/251 (12%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLHL----- 59
            V   P     S   +  + G+++ L CHA  +P    SW  N         L +     
Sbjct: 198 NVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITV 257

Query: 60  --AIPYT------------SPEAQVD---TPPVILNNSPQLSVAKEGQSVQLECHAEGHP 102
             +  YT            +    +     PP     S   +  ++  +V L C  E   
Sbjct: 258 NNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN 317

Query: 103 IPTISWRRENNAILPNG--QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160
             T  W   N ++  +   Q      TL +  +T+ D G Y C  QN +       + + 
Sbjct: 318 -TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILN 376

Query: 161 VEFAP-IVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
           V + P   T+  +        ++ L CH  + P     W  DG I  + +   ISN   +
Sbjct: 377 VLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISN--IT 434

Query: 220 EGTTGSLQCKV 230
           E  +G   C+ 
Sbjct: 435 EKNSGLYTCQA 445

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  120 bits (303), Expect = 1e-31
 Identities = 43/241 (17%), Positives = 66/241 (27%), Gaps = 41/241 (17%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH---------LAIP 62
           PP     S   +  ++  +V L C  E      + W  N                 L + 
Sbjct: 288 PPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLL 347

Query: 63  YTSPE----------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG 100
             +                          V   P     SP  +  + G ++ L CHA  
Sbjct: 348 SVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAAS 407

Query: 101 HPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG---RGARRKI 157
           +P    SW         +G        L I  IT+++ G Y C A N      R   + I
Sbjct: 408 NPPAQYSWLI-------DGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTI 460

Query: 158 EVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFG 217
            V  E        +          +   C  EA     L+W     + V+      +   
Sbjct: 461 TVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNR 520

Query: 218 T 218
           T
Sbjct: 521 T 521

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  120 bits (303), Expect = 1e-31
 Identities = 46/245 (18%), Positives = 69/245 (28%), Gaps = 42/245 (17%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN---------FKRLGRLHL 59
               P    +S      ++  +V   C  E      + W  N             G   L
Sbjct: 107 YPELPKPSISSNNSKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTL 166

Query: 60  AIP---------YT-----------SPEA--QVDTPPVILNNSPQLSVAKEGQSVQLECH 97
            +          Y            S      V   P     SP  +  + G+++ L CH
Sbjct: 167 TLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCH 226

Query: 98  AEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG---RGAR 154
           A  +P    SW         NG    +   L IP IT  + G+Y C A N      R   
Sbjct: 227 AASNPPAQYSWFV-------NGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTV 279

Query: 155 RKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
             I V  E        +          + L C  E      L+W  + + +       +S
Sbjct: 280 TTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWW-VNNQSLPVSPRLQLS 338

Query: 215 NFGTS 219
           N   +
Sbjct: 339 NDNRT 343

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  100 bits (250), Expect = 1e-24
 Identities = 35/181 (19%), Positives = 48/181 (26%), Gaps = 39/181 (21%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIP--------- 62
            P    +S      ++  +V   C  E      + W           L +          
Sbjct: 466 LPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLF 525

Query: 63  ---------YT-----------SPEA--QVDTPPVILNNSPQLSVAKEGQSVQLECHAEG 100
                    Y            S      V   P     SP  S    G ++ L CH+  
Sbjct: 526 NVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSAS 585

Query: 101 HPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160
           +P P  SWR        NG        L I +IT  + G Y C   N    G    I   
Sbjct: 586 NPSPQYSWRI-------NGIPQQHTQVLFIAKITPNNNGTYACFVSNLAT-GRNNSIVKS 637

Query: 161 V 161
           +
Sbjct: 638 I 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 83.9 bits (207), Expect = 7e-19
 Identities = 26/178 (14%), Positives = 44/178 (24%), Gaps = 28/178 (15%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRR---------------ENNAILPNG-----Q 120
                  EG+ V L  H     +   SW +                     P       +
Sbjct: 6   STPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGRE 65

Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK--IEVKVEFAPIVTVQSTRIGQAL 178
            I+  ++L I  I + D G Y                   V  E        +       
Sbjct: 66  IIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVED 125

Query: 179 HHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT------SEGTTGSLQCKV 230
              +   C  E      L+W  +  + V+      +   T      +   T S +C+ 
Sbjct: 126 KDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCET 183

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  129 bits (326), Expect = 9e-36
 Identities = 49/268 (18%), Positives = 86/268 (32%), Gaps = 55/268 (20%)

Query: 6   ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------- 54
           ++++  PP I   S +  +     ++ +EC A+G+P P+  W RN +             
Sbjct: 10  QNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMR 69

Query: 55  ---GRLHLAIP-----------YT-----------SPEA--QVDTPPVILNNSPQLSVAK 87
              G L +              Y            S     QV   P+    +    V +
Sbjct: 70  RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQ 129

Query: 88  EGQSVQLECHA-EGHPIPTISWRRENNAILPNG--QTIFTGSTLQIPRITKED-RGAYYC 143
           EG  + L+C+   G P P I W   +   +      +      L    +  +D +  Y C
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC 189

Query: 144 VAQNGIGRGARRKIEVKV---------EFAPIVTVQSTRIGQ---ALHHDMDLDCHIEAY 191
            A+       ++K    +         E  P                  D+ L+C     
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGV 249

Query: 192 PHPILYWAKDGEIVVNDEYHSISNFGTS 219
           P P + W K G  + +D+     NF  +
Sbjct: 250 PTPDIAWYKKGGDLPSDKAK-FENFNKA 276

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  129 bits (325), Expect = 1e-35
 Identities = 53/257 (20%), Positives = 89/257 (34%), Gaps = 50/257 (19%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRL------------ 54
           QV   P+    +    V +EG  + L+C+   G P P I W  +                
Sbjct: 111 QVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN 170

Query: 55  GRLH--------------------------------LAIPYTSPEAQVDTPPVILNNSPQ 82
           G L+                                L +  T   A+     +    +  
Sbjct: 171 GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTAS 230

Query: 83  LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI-FTGSTLQIPRITKEDRGAY 141
             +   G  + LEC A G P P I+W ++   +  +          L+I  +++ED G Y
Sbjct: 231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEY 290

Query: 142 YCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD 201
           +C+A N +G   R  I V+V+ AP    +   +  A   D  L C     P P + W  +
Sbjct: 291 FCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVN 349

Query: 202 GEIVV---NDEYHSISN 215
           GE +     +    ++ 
Sbjct: 350 GEPLQSAPPNPNREVAG 366

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  128 bits (324), Expect = 1e-35
 Identities = 48/253 (18%), Positives = 77/253 (30%), Gaps = 48/253 (18%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRL------------ 54
           +                  EG  V   C     +P  +  W  N                
Sbjct: 96  RFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ 155

Query: 55  --GRLHL------------------------------AIPYTSPEAQVDTPPVILNNSPQ 82
             G L++                              +    + E      P I    P 
Sbjct: 156 TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPA 215

Query: 83  LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYY 142
            + A  GQ V LEC A G+P+P I WR+ + +     + + +   L I  +  ED G Y 
Sbjct: 216 DTYALTGQMVTLECFAFGNPVPQIKWRKLDGS--QTSKWLSSEPLLHIQNVDFEDEGTYE 273

Query: 143 CVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG 202
           C A+N  GR    +  + +   P      T     +  D+   C     P P + W +DG
Sbjct: 274 CEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDG 332

Query: 203 EIVVNDEYHSISN 215
           + + +     +S 
Sbjct: 333 QPLASQNRIEVSG 345

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  120 bits (302), Expect = 2e-32
 Identities = 45/186 (24%), Positives = 66/186 (35%), Gaps = 29/186 (15%)

Query: 4   SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN------FKRLGRL 57
           + E      P I       + A  GQ V LEC A G+P+P I WR+              
Sbjct: 198 AAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP 257

Query: 58  HLAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSVQLEC 96
            L I     E        A              +   P  L+     + A  G  ++  C
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLD-VITDTEADIGSDLRWSC 316

Query: 97  HAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK 156
            A G P P + W R+   +    +   +G  L+  ++  ED G Y CVA+N  G      
Sbjct: 317 VASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT-VYAS 375

Query: 157 IEVKVE 162
            E+ V+
Sbjct: 376 AELTVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  112 bits (282), Expect = 1e-29
 Identities = 45/243 (18%), Positives = 63/243 (25%), Gaps = 51/243 (20%)

Query: 12  PPVILN--NSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRL 57
            PV       T        + V L C A  +P  T  W+ N   L            G L
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 58  HLAIP--------YT-----------SPEA--QVDTPPVILNNSPQLSVAKEGQSVQLEC 96
            ++ P        Y            S EA  +                  EG  V   C
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTC 123

Query: 97  HA-EGHPIPTISWRRENNAILPNGQ----TIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151
                +P  +  W                   T   L I +    D G Y C A + I  
Sbjct: 124 SPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDF 183

Query: 152 GARRKI----------EVKVEFAPIVTVQSTRIGQAL-HHDMDLDCHIEAYPHPILYWAK 200
             +             E   ++AP +  +      AL    + L+C     P P + W K
Sbjct: 184 ITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRK 243

Query: 201 DGE 203
              
Sbjct: 244 LDG 246

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 90.7 bits (225), Expect = 1e-21
 Identities = 29/156 (18%), Positives = 46/156 (29%), Gaps = 10/156 (6%)

Query: 73  PPVILNNSPQLSV--AKEGQSVQLECHAEGHPIPTISWRRENNAI--LPNGQTIFTGSTL 128
            PV                + V L C A  +P  T  W+     +   P+ +       L
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 129 QIPRITK-EDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH-HDMDLDC 186
            I    K +D G+Y CVA N  G    R+  ++  F    + +     +      +   C
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTC 123

Query: 187 HIEA-YPHPILYWAKDGE---IVVNDEYHSISNFGT 218
                YP     W  +     I  +         G 
Sbjct: 124 SPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 159

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  127 bits (320), Expect = 1e-35
 Identities = 46/256 (17%), Positives = 77/256 (30%), Gaps = 51/256 (19%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-------------FKRLG 55
            + PP  +           G      C A G P P ++W +              F    
Sbjct: 3   GEEPPRFIKEPKDQIGV-SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61

Query: 56  RLHLAIP----------YT-------------------SPEAQVDTPPVILNNSPQLSVA 86
              L I           Y                      +      P I    PQL V 
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDM-GPQLKVV 120

Query: 87  KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ----TIFTGSTLQIPRITKEDRGAYY 142
           +  ++  + C A G+P P I+W ++   + P+             LQI    + D+G Y 
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180

Query: 143 CVAQNGIGRGARRKIEVKV---EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWA 199
           CVA N  G        + V     AP  ++           ++++ C     P P + W 
Sbjct: 181 CVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWM 240

Query: 200 KDGEIVVNDEYHSISN 215
           +  E +  ++   +  
Sbjct: 241 QGAEDLTPEDDMPVGR 256

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  105 bits (263), Expect = 2e-27
 Identities = 39/204 (19%), Positives = 66/204 (32%), Gaps = 42/204 (20%)

Query: 4   SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------GRL 57
             +      P I     QL V +  ++  + C A G+P P I+W ++F  +      GR+
Sbjct: 100 REDQLPSGFPNIDM-GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRI 158

Query: 58  H------LAIP---------YT-----------SPEAQV-----DTPPVILNNSPQLSVA 86
                  L I          Y            S  A +     +  P      P     
Sbjct: 159 KQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSIL-PMSHEI 217

Query: 87  KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
             G +V + C A G P+P + W +    + P            +     +D   Y CVA 
Sbjct: 218 MPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD--MPVGRNVLELTDVKDSANYTCVAM 275

Query: 147 NGIGRGARRKIEVKVEFAPIVTVQ 170
           + +G       ++ V+  P    +
Sbjct: 276 SSLGV-IEAVAQITVKSLPKAGTK 298

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 97.2 bits (242), Expect = 2e-24
 Identities = 34/171 (19%), Positives = 57/171 (33%), Gaps = 19/171 (11%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----- 124
            + PP  +   P+  +   G      C A G P P ++W ++   +              
Sbjct: 3   GEEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61

Query: 125 GSTLQIPRI-TKEDRGAYYCVAQNGIGRGARRKIEVKVE-------FAPIVTVQSTRIGQ 176
           G+ L+I  + T  D   Y CVAQN +G       ++ V          P + +       
Sbjct: 62  GAVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120

Query: 177 ALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
                  + C     P P + W KD   V     +        +  +G+LQ
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGR----IKQLRSGALQ 167

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  126 bits (318), Expect = 1e-35
 Identities = 41/248 (16%), Positives = 78/248 (31%), Gaps = 42/248 (16%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHL 59
              +  + +++ ++  G+S    C A G P     +    +++             R  L
Sbjct: 4   LLQVTISLSKVELS-VGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRL 62

Query: 60  AIPYTSPE----------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECH 97
            I   + E                       ++                K+G+  ++ C 
Sbjct: 63  TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFRE-VVSPQEFKQGEDAEVVCR 121

Query: 98  AEGHPIPTISWRRENNAILPNGQ---TIFTGSTLQIPRITKEDRGAYYCVAQN-GIGRGA 153
               P P +SW   N  +         +   + LQI  I K D G Y C  +    G   
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID 181

Query: 154 RRKIEVKVEFAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH 211
            R I V V   P +++             +M   C     P P + W ++G+++  +E +
Sbjct: 182 FRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY 241

Query: 212 SISNFGTS 219
            +    T 
Sbjct: 242 ILKGSNTE 249

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  111 bits (280), Expect = 6e-30
 Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 39/195 (20%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-----------FKRLGR 56
           ++          +      +G+  ++ C     P P +SW  +           F  L  
Sbjct: 94  EIYQKLTFREVVSPQEFK-QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLAN 152

Query: 57  LHLAIPYTSPE-----------------------AQVDTPPVI-LNNSPQLSVAKEGQSV 92
            +L I   +                           V+ PP I +      + A+ G+ +
Sbjct: 153 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 212

Query: 93  QLECHAEGHPIPTISWRRENNAILPNGQTIFT--GSTLQIPRITKEDRGAYYCVAQNGIG 150
              C A G P P ISW R    I  N + I     + L +  I   D G Y C A N  G
Sbjct: 213 TFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAG 272

Query: 151 RGARRKIEVKVEFAP 165
               ++  ++V    
Sbjct: 273 E-DEKQAFLQVFVQH 286

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  125 bits (315), Expect = 3e-34
 Identities = 39/263 (14%), Positives = 75/263 (28%), Gaps = 61/263 (23%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECH-AEGHPIPTISWRRNFKRL------------ 54
           +           T      EG+  QL+C     +P P I+W++                 
Sbjct: 96  RKTYLIAS-PAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRR 154

Query: 55  ------GRLHLA---------------------------------IPYTSPEAQVDTPPV 75
                 G L+                                      T   +     PV
Sbjct: 155 ITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPV 214

Query: 76  ILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG------QTIFTGSTLQ 129
                 +  +AK G    + C    +P+   ++ +    +  N           +G  L 
Sbjct: 215 PQY-VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLL 273

Query: 130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQA-LHHDMDLDCHI 188
                 ED G Y C   NG+G+  +  +++ V  AP    +  ++       D+ + C +
Sbjct: 274 FKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKV 333

Query: 189 EAYPHPILYWAKDGEIVVNDEYH 211
              P P + W+ + + +      
Sbjct: 334 TGLPAPNVVWSHNAKPLSGGRAT 356

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  120 bits (303), Expect = 2e-32
 Identities = 49/271 (18%), Positives = 82/271 (30%), Gaps = 58/271 (21%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPT-ISWRRNFKRL------------- 54
           VD  PV+ +   ++   +E     LEC  EG+      SW+++ K               
Sbjct: 3   VDKYPVLKDQPAEVLF-RENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE 61

Query: 55  GRLHLAIP-------YT-----------SPEA--QVDTPPVILNNSPQLSVAKEGQSVQL 94
           G L    P       Y            S     +                  EG+  QL
Sbjct: 62  GSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIAS-PAKTHEKTPIEGRPFQL 120

Query: 95  ECH-AEGHPIPTISWRRENNAILPNGQ--------TIFTGSTLQIPRITKEDR---GAYY 142
           +C     +P P I+W++  +   PN          T      L    +TKED      Y 
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYV 180

Query: 143 CVAQNGIGRGARRKIEVKVE----------FAPIVTVQSTRIGQALHHDMDLDCHIEAYP 192
           C A+N         +E +++            P+    S  +         + C   + P
Sbjct: 181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNP 240

Query: 193 HPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
                + K+G+ V  +    I+    + G  
Sbjct: 241 MGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 271

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  117 bits (295), Expect = 2e-31
 Identities = 43/197 (21%), Positives = 62/197 (31%), Gaps = 39/197 (19%)

Query: 1   PYTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN---------- 50
             T   S     PV    S  +   K G    + C    +P+   ++ +N          
Sbjct: 201 GVTKDNSGYKGEPVPQYVSKDMMA-KAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPED 259

Query: 51  ----FKRLGRLHLAIPYTSPEAQ----------------------VDTPPVILNNSPQLS 84
                 R     L    T PE +                      V + P       ++ 
Sbjct: 260 RITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVI 319

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCV 144
           V K+GQ V + C   G P P + W   N   L  G+   T S L I  +   D+G Y C 
Sbjct: 320 VVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCR 378

Query: 145 AQNGIGRGARRKIEVKV 161
           A N  G     +  V+V
Sbjct: 379 ATNEHGD-KYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  106 bits (265), Expect = 4e-27
 Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 6/163 (3%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFT---G 125
           VD  PV+ +  P   + +E     LEC  EG+      SW+++  +              
Sbjct: 3   VDKYPVLKD-QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE 61

Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLD 185
            +L   R    D G Y C A+   G  + R I  +  +      ++            LD
Sbjct: 62  GSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLD 121

Query: 186 CHI-EAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
           C +  AYP P++ W K       +   +  +   + G  G+L 
Sbjct: 122 CVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLY 164

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  119 bits (300), Expect = 7e-34
 Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 4/153 (2%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF---TG 125
           ++   PVI     +   A   +     C  E +P P ISW R    I            G
Sbjct: 3   KLPKAPVITT-PLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61

Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLD 185
             L I  +   D G Y C A NG+G        ++V+  P +T     +         L 
Sbjct: 62  QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLP 121

Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
           C     P P + W K    +  +   ++   G+
Sbjct: 122 CTTMGNPKPSVSWIKGDSALRENSRIAVLESGS 154

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  118 bits (298), Expect = 1e-33
 Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 36/189 (19%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----GRLH----- 58
           ++   PVI      +      +     C  E +P P ISW RN   +     R       
Sbjct: 3   KLPKAPVITTPLETVDAL-VEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61

Query: 59  --LAIPYTSPE----------------------AQVDTPPVILNNSPQLSVAKEGQSVQL 94
             L I                             QV   P I    P      EG    L
Sbjct: 62  QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP-PINVKIIEGLKAVL 120

Query: 95  ECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA 153
            C   G+P P++SW + ++A+  N    +    +L+I  + KED G Y CVA+N +G   
Sbjct: 121 PCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAY 180

Query: 154 RRKIEVKVE 162
            + ++++VE
Sbjct: 181 SKLVKLEVE 189

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  115 bits (290), Expect = 2e-32
 Identities = 38/188 (20%), Positives = 61/188 (32%), Gaps = 39/188 (20%)

Query: 11  TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-----------FKRLGRLHL 59
           +        +      +G+  ++ C     P P +SW  +           F  L   +L
Sbjct: 1   SMLTFREVVSPQEFK-QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59

Query: 60  AIPYTSPE-----------------------AQVDTPPVI-LNNSPQLSVAKEGQSVQLE 95
            I   +                           V+ PP I +      + A+ G+ +   
Sbjct: 60  QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119

Query: 96  CHAEGHPIPTISWRRENNAILPNGQTIFT--GSTLQIPRITKEDRGAYYCVAQNGIGRGA 153
           C A G P P ISW R    I  N + I     + L +  I   D G Y C A N  G   
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE-D 178

Query: 154 RRKIEVKV 161
            ++  ++V
Sbjct: 179 EKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score =  115 bits (290), Expect = 2e-32
 Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 7/154 (4%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT---GSTL 128
           +              K+G+  ++ C     P P +SW   N  +       F     + L
Sbjct: 1   SMLTFREV-VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59

Query: 129 QIPRITKEDRGAYYCVAQN-GIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD--LD 185
           QI  I K D G Y C  +    G    R I V V   P +++             +    
Sbjct: 60  QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119

Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
           C     P P + W ++G+++  +E + +    T 
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTE 153

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  116 bits (291), Expect = 2e-32
 Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 17/173 (9%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP------------NG 119
              V +++S       E   V+L C   G   P + W+ +                    
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 120 QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAPIVTVQSTRIGQAL 178
           +  F  + +    +T+ED G Y C+     G      K+++ V   P     +      +
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121

Query: 179 HHDMDLDC-HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS---EGTTGSLQ 227
            +   L C   +  P     W KDG ++  +   + +   +S     TTG L 
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV 174

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  104 bits (261), Expect = 5e-28
 Identities = 36/207 (17%), Positives = 56/207 (27%), Gaps = 57/207 (27%)

Query: 11  TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRL------------- 57
              V +++S       E   V+L C   G   P + W+ +     RL             
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 58  -------HLAIPYTSPE--------AQ---------------VDTPPVILNNSPQLSVAK 87
                   +     + E                         V  PP         S A 
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK-PTVNIPSSAT 120

Query: 88  EGQSVQLECHA-EGHPIPTISWRRENNAILPNGQ-----------TIFTGSTLQIPRITK 135
            G    L C   +G P    +W ++   +  N +              T   L    ++ 
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA 180

Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKVE 162
            D G Y C A+NG G        V++E
Sbjct: 181 SDTGEYSCEARNGYGT-PMTSNAVRME 206

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  114 bits (286), Expect = 7e-32
 Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 7/159 (4%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTIS--WRRENNAILPNGQTIFTGSTLQ 129
             P I+  S ++ +      V L+C+        +   W + N   L   +   +    +
Sbjct: 2   NEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK-NGVELTATRKNASNMEYR 59

Query: 130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIE 189
           I +   ED G Y+CV         +    ++V+ AP +T       +    D  + C   
Sbjct: 60  INKPRAEDSGEYHCVYHFV--SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSV 117

Query: 190 AYPHPILYWAKDGEIVVNDEYHSISNFG-TSEGTTGSLQ 227
            YPHP   W K    V  +  +S   F   ++     L 
Sbjct: 118 GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELN 156

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 98.4 bits (245), Expect = 9e-26
 Identities = 38/191 (19%), Positives = 59/191 (30%), Gaps = 42/191 (21%)

Query: 11  TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTIS--WRRNFKRL--GRLH-----LAI 61
             P I+  S ++ +      V L+C+        +   W +N   L   R +       I
Sbjct: 2   NEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRI 60

Query: 62  PYTSPE--------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH 101
                E                     +V   P I     +     EGQ   + C + G+
Sbjct: 61  NKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITG-HKRSENKNEGQDAMMYCKSVGY 119

Query: 102 PIPTISWRRENNAILPNGQTIF---------TGSTLQIPRI-TKEDRGAYYCVAQNGIGR 151
           P P   WR++ N +                   + L I  +   ED G Y C A N IG 
Sbjct: 120 PHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS 179

Query: 152 G-ARRKIEVKV 161
                 + V+V
Sbjct: 180 ASVSTVLRVRV 190

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  115 bits (288), Expect = 4e-31
 Identities = 40/253 (15%), Positives = 68/253 (26%), Gaps = 41/253 (16%)

Query: 10  DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH-------LAIP 62
           D  PVI  +  +L V + G++V L C + G    ++ W         L        L   
Sbjct: 2   DPAPVIEPSGPELVV-EPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTR 56

Query: 63  YTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG- 100
             + +                       V  P    N   Q     EGQ   L C     
Sbjct: 57  NATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDP 116

Query: 101 HPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158
               ++S  RE    +      F        I +    D   Y C             I 
Sbjct: 117 ALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIW 176

Query: 159 VKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
           +KV       P + ++ +++ +       + C             K G+  +    +S  
Sbjct: 177 LKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDF 236

Query: 215 NFGTSEGTTGSLQ 227
                +    +L 
Sbjct: 237 QDNYYKK-VRALS 248

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 91.9 bits (228), Expect = 2e-22
 Identities = 32/206 (15%), Positives = 48/206 (23%), Gaps = 46/206 (22%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRN----------FKRLGRL 57
           V  P    N   Q     EGQ   L C         ++S  R           +      
Sbjct: 85  VKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWR 144

Query: 58  HLAIPYTSPE--------------------------AQVDTPPVILNNSPQLSVAKEGQS 91
              I                                     PP I    P   V   G++
Sbjct: 145 GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKL-EPSKLVRIRGEA 203

Query: 92  VQLECHAEGHPIPTISWRRENNAILP-------NGQTIFTGSTLQIPRITKEDRGAYYCV 144
            Q+ C A    +      +  +  L                  L +  +  +D G Y CV
Sbjct: 204 AQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCV 263

Query: 145 AQNGIGRGARRKIEVKVEFAPIVTVQ 170
           A N +G      +  +V  +      
Sbjct: 264 ASNDVGT-RTATMNFQVVESHHHHHH 288

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  111 bits (280), Expect = 4e-31
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 8/147 (5%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------GS 126
              ++  +P      +GQ V+L C  EG   P I W ++   +    Q            
Sbjct: 2   GLKLMG-APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIG 60

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
            L +  + + D G Y+C  ++G      + + + VE  P  TV+   +    +    L C
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSC 120

Query: 187 HIEAYPHPILY-WAKDGEIVVNDEYHS 212
                P P+   W +    +       
Sbjct: 121 EAVGPPEPVTIVWWRGTTKIGGPAPSP 147

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  116 bits (292), Expect = 6e-31
 Identities = 44/278 (15%), Positives = 74/278 (26%), Gaps = 59/278 (21%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGH---PIPTISWRRNFKRL---------- 54
           +         +  +  V   G S  ++C         +  +SW  + +            
Sbjct: 99  RAVVAQYYEADVNKEHVI-RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 157

Query: 55  ------GRLHLA---------------------IPYTSPEAQV--------DTPPVILNN 79
                 G LH+                          S              + P     
Sbjct: 158 YLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPAL 217

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE------NNAILPNGQTIFTGSTLQIPRI 133
             +        ++ L C A+G P P+  W +         A++ N +      TL I   
Sbjct: 218 VQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 277

Query: 134 TKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH 193
             ED G Y CV  N +G     +  + V       +                C     P 
Sbjct: 278 VVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 336

Query: 194 PILYWAKDGEIVVNDEYH-SISNFGTSEGTTGSLQCKV 230
             + W KDG+ + + E    I +    +   G  QC V
Sbjct: 337 KTVSWMKDGKAIGHSESVLRIESVKKED--KGMYQCFV 372

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  109 bits (274), Expect = 2e-28
 Identities = 42/270 (15%), Positives = 70/270 (25%), Gaps = 59/270 (21%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-------------GRLH 58
            PV L   T           ++EC A G+P+P I W R+                 G+L 
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62

Query: 59  LAIP-------------YT-----------SPEAQVD--TPPVILNNSPQLSVAKEGQSV 92
                            Y            S +  V                    G S 
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYY-EADVNKEHVIRGNSA 121

Query: 93  QLECHAEGH---PIPTISWRRENNAILPNGQ------TIFTGSTLQIPRITKED-RGAYY 142
            ++C         +  +SW  +       G        +     L I  +  ED   +Y 
Sbjct: 122 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 181

Query: 143 CVAQNGIGRGARRKIEVKV--------EFAPIVTVQSTRIGQAL-HHDMDLDCHIEAYPH 193
           C  ++ +    R                 AP       +  + +  H + L C  + +P 
Sbjct: 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPA 241

Query: 194 PILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
           P   W K  E     +   +++       T
Sbjct: 242 PSFRWYKFIEGTTRKQAVVLNDRVKQVSGT 271

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 99.2 bits (247), Expect = 1e-24
 Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 14/167 (8%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQ 129
            PV L               ++EC A G+P+P I W R +   + +    + I +   L 
Sbjct: 3   GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLV 62

Query: 130 IPRITKED------RGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD 183
            P    ED         Y C+A+N  G    R + V+   A        +      +   
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122

Query: 184 LDCHIEAY---PHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
           + C I ++      ++ W  D E            +      +G L 
Sbjct: 123 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY--LVLPSGELH 167

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  116 bits (292), Expect = 7e-31
 Identities = 35/267 (13%), Positives = 71/267 (26%), Gaps = 49/267 (18%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-----------FKRLGR 56
            +    +           +      L C +E  P P + W                 + +
Sbjct: 136 SIRNTLLYTLRRPYFRKMEN--QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKK 193

Query: 57  LHLAIP------YT-----------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA- 98
               +                    +    +D         PQL + K G+ + + C A 
Sbjct: 194 EEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFL-KVGEPLWIRCKAV 252

Query: 99  EGHPIPTISWRRENNAILP----------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148
             +    ++W  EN A+              +T+       +  + + D G Y C +   
Sbjct: 253 HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH 312

Query: 149 IGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND 208
             + A   + +  +     T  S       + +       +AYP     W    +    +
Sbjct: 313 PSQSAL--VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370

Query: 209 EY-----HSISNFGTSEGTTGSLQCKV 230
           +      +SIS F   +   G      
Sbjct: 371 QKGLDNGYSISKFCNHKHQPGEYIFHA 397

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  107 bits (268), Expect = 2e-27
 Identities = 26/244 (10%), Positives = 64/244 (26%), Gaps = 39/244 (15%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-----------FKRLGRL 57
             +   +   +          S+ L+   +     +  W               +  G +
Sbjct: 46  PQSSGTVYEAAAV--EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVV 103

Query: 58  HLAIPYTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQLEC 96
            + I   +                         +    +     P     +      L C
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMEN--QDALVC 161

Query: 97  HAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK 156
            +E  P P + W   ++      +        +   + +       C A+N +GR   R 
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221

Query: 157 IEVKVEFAPIVTVQSTRIGQALHHDMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISN 215
             + +   P  T+    +   +   + + C  +       L W  + + +    Y  +S 
Sbjct: 222 FTIDLNQTPQTTLPQLFL--KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMST 279

Query: 216 FGTS 219
           + T+
Sbjct: 280 YSTN 283

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 97.4 bits (242), Expect = 7e-24
 Identities = 23/195 (11%), Positives = 51/195 (26%), Gaps = 40/195 (20%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRL------------- 54
           +D          QL + K G+ + + C A   +    ++W    K L             
Sbjct: 224 IDLNQTPQTTLPQLFL-KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST 282

Query: 55  -----GRLHLAIPYTSPE----------------AQV---DTPPVILNNSPQLSVAKEGQ 90
                  L   +   +                  A V   +   +   NS +     + +
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYE 342

Query: 91  SVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
                   + +P    +W     +     + +  G ++      K   G Y   A+N   
Sbjct: 343 EFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA 402

Query: 151 RGARRKIEVKVEFAP 165
           +   +   + +    
Sbjct: 403 Q-FTKMFTLNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 8/85 (9%), Positives = 26/85 (30%), Gaps = 5/85 (5%)

Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI 195
               +Y  V+++    G   + +     +     ++  +   +   + L   ++A  +  
Sbjct: 25  GKSSSYPMVSESPEDLGCALRPQ-----SSGTVYEAAAVEVDVSASITLQVLVDAPGNIS 79

Query: 196 LYWAKDGEIVVNDEYHSISNFGTSE 220
             W      +    +  + N G   
Sbjct: 80  CLWVFKHSSLNCQPHFDLQNRGVVS 104

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  113 bits (284), Expect = 1e-30
 Identities = 38/253 (15%), Positives = 66/253 (26%), Gaps = 41/253 (16%)

Query: 10  DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-------FKRLGRLHLAIP 62
            + PVI  +  +L V   G +V L C   G    ++ W          +       L+  
Sbjct: 2   GSIPVIEPSVPELVVK-PGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTN 56

Query: 63  YTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH 101
             + +                       V  P    N   Q  V  E Q   L C     
Sbjct: 57  NATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDP 116

Query: 102 PI-PTISWRRENNAILPNG--QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158
            +   +S  R     L      +        I R        Y C A  G  +     I 
Sbjct: 117 VLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIR 176

Query: 159 VKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
           +KV+      P +T+    + +       + C   +       + +     +     S  
Sbjct: 177 LKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDF 236

Query: 215 NFGTSEGTTGSLQ 227
           +    +    +L 
Sbjct: 237 HNNRYQ-KVLTLN 248

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 90.0 bits (223), Expect = 8e-22
 Identities = 38/216 (17%), Positives = 57/216 (26%), Gaps = 52/216 (24%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPI-PTISWRRNFKRLGRLH--------- 58
           V  P    N   Q  V  E Q   L C      +   +S  R   R    H         
Sbjct: 85  VKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH 144

Query: 59  -LAIPYTSPE--------------------------AQVDTPPVILNNSPQLSVAKEGQS 91
              I                                  +  PP +    P   V   G++
Sbjct: 145 GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTL-VPAELVRIRGEA 203

Query: 92  VQLECHAEGHPIPTISWRRENNAILPNGQT-------IFTGSTLQIPRITKEDRGAYYCV 144
            Q+ C A    +    + + NN  L   Q             TL + ++  +  G Y CV
Sbjct: 204 AQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCV 263

Query: 145 AQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHH 180
           A N  G+     +  +V  +   +          HH
Sbjct: 264 ASNVQGK-HSTSMFFRVVESAGNSHHHH------HH 292

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score =  110 bits (276), Expect = 5e-30
 Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 47/197 (23%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLHLAIP------ 62
              I  N    +V   GQ V+L C A GHP     W +  K +       L         
Sbjct: 18  GSKITVNPESKAVL-AGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKD 76

Query: 63  ---YT-----------SPEAQVD-----------------TPPVILNNSPQLSVAKEGQS 91
              Y            S  +Q+D                 +   I    P       G +
Sbjct: 77  AGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVE-PTSQKLMPGST 135

Query: 92  VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151
           + L+C A G PIP   W +    +        T     +P +  E +G Y+C   N    
Sbjct: 136 LVLQCVAVGSPIPHYQWFKNELPLTHE-----TKKLYMVPYVDLEHQGTYWCHVYNDRDS 190

Query: 152 GARRKIEVKVEFAPIVT 168
              +K+E+ ++    + 
Sbjct: 191 QDSKKVEIIIDELNNLG 207

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 94.9 bits (236), Expect = 4e-24
 Identities = 36/173 (20%), Positives = 52/173 (30%), Gaps = 21/173 (12%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR 132
              I   +P+      GQ V+L C A GHP     W + N  I PNG      S L    
Sbjct: 18  GSKITV-NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEI-PNG----NTSELIFNA 71

Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH------------- 179
           +  +D G Y C   N       +  ++ V   P    +S                     
Sbjct: 72  VHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLM 131

Query: 180 --HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
               + L C     P P   W K+   + ++               G+  C V
Sbjct: 132 PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHV 184

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 3   TSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLHL 59
            S +   ++   I    T   +   G ++ L+C A G PIP   W +N   L    +   
Sbjct: 109 RSVDGVSESKLQICVEPTSQKLM-PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLY 167

Query: 60  AIPYTSPE 67
            +PY   E
Sbjct: 168 MVPYVDLE 175

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  110 bits (275), Expect = 5e-30
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 19/172 (11%)

Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP------------NGQT 121
             +      + V  E +S++L C   G   P + W+    +                 + 
Sbjct: 2   GSVYTAQSDVQVP-ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 122 IFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAPIVTVQSTRIGQALHH 180
            F+ S +    +T++D G Y C+     G+      I + V   P     S      + +
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120

Query: 181 DMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISNFGTS----EGTTGSLQ 227
              L C   +  P     W KDG  ++  +      F  S    +  +G L 
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLI 172

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 97.7 bits (243), Expect = 2e-25
 Identities = 34/209 (16%), Positives = 54/209 (25%), Gaps = 59/209 (28%)

Query: 13  PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRR--------------------NFK 52
             +    + + V  E +S++L C   G   P + W+                     +  
Sbjct: 2   GSVYTAQSDVQVP-ENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 53  RLGRLHLAIPYTSPE--------AQ---------------VDTPPVILNNSPQLSVAKEG 89
                 +     + +                         V  PP         S    G
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPT-ISVPSSVTIG 119

Query: 90  QSVQLECHA-EGHPIPTISWRRENNAILPNGQTIFT------------GSTLQIPRITKE 136
               L C   +G P    SW ++  ++L                       L    +T  
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179

Query: 137 DRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
           D G YYC AQNG G  A R     ++   
Sbjct: 180 DSGEYYCQAQNGYGT-AMRSEAAHMDAVE 207

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  113 bits (283), Expect = 5e-30
 Identities = 37/224 (16%), Positives = 67/224 (29%), Gaps = 52/224 (23%)

Query: 24  VAKEGQSVQLECHAEGHPIPTISWRRN-----------------------------FKRL 54
           + K+G +V+L C A         W+ +                                 
Sbjct: 5   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64

Query: 55  GRLHLAIPYTSPE-------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH 101
           G   L I     E              +V      L  +    +  +GQS+ L   +   
Sbjct: 65  GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL-LQGQSLTLTLESPPG 123

Query: 102 PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
             P++  R       P G+ I  G TL + ++  +D G + C            KI++ V
Sbjct: 124 SSPSVQCRS------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176

Query: 162 -EFAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHPILYWAKDGE 203
             F    ++   + G+ +     L   +E       L+W  +  
Sbjct: 177 LAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERA 220

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 76.8 bits (188), Expect = 1e-16
 Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 33/168 (19%)

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-------------------- 124
           + K+G +V+L C A         W+  N   +   Q  F                     
Sbjct: 5   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64

Query: 125 -GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD 183
               L I  +  ED   Y C  ++         +++ V      +      GQ+L     
Sbjct: 65  GNFPLIIKNLKIEDSDTYICEVEDQKEE-----VQLLVFGLTANSDTHLLQGQSL----T 115

Query: 184 LDCHIEAYPHPILYWAK-DGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
           L         P +      G+ +   +  S+S     +  +G+  C V
Sbjct: 116 LTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQD--SGTWTCTV 161

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 69.8 bits (170), Expect = 3e-14
 Identities = 33/258 (12%), Positives = 65/258 (25%), Gaps = 66/258 (25%)

Query: 23  SVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----GRLHLA------------------ 60
           +   +GQS+ L   +     P++  R    +       L ++                  
Sbjct: 106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQ 165

Query: 61  --------------IPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-- 104
                            +S   + +   V  +     +V K   S +L   AE       
Sbjct: 166 KKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKS 225

Query: 105 --TISW--------RRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
             T           R   +  L  G+ +    TL          G      +   G+   
Sbjct: 226 WITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK-LH 284

Query: 155 RKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVNDEYHS 212
           +++ + V              +A     +L C +     P  +L    + +     +   
Sbjct: 285 QEVNLVVM-------------RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK 331

Query: 213 ISNFGTSEGTTGSLQCKV 230
                  E   G  QC +
Sbjct: 332 AVWVLNPE--AGMWQCLL 347

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 58.3 bits (140), Expect = 3e-10
 Identities = 25/192 (13%), Positives = 52/192 (27%), Gaps = 36/192 (18%)

Query: 1   PYTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP----TISW--------- 47
             +S   + +   V  +     +V K   S +L   AE         T            
Sbjct: 181 KASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKR 240

Query: 48  -----RRNFKRLGRLHLAIPYTSPEA--------QVDTPPVILNNSPQLSVAK-EGQSVQ 93
                +    +   LHL +P   P+          ++     L+    L V +       
Sbjct: 241 VTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKN 300

Query: 94  LECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA 153
           L C   G   P +    +        +        +   +   + G + C+  +      
Sbjct: 301 LTCEVWGPTSPKLMLSLK-----LENKEAKVSKREKAVWVLNPEAGMWQCLLSD----SG 351

Query: 154 RRKIEVKVEFAP 165
           +  +E  ++  P
Sbjct: 352 QVLLESNIKVLP 363

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  110 bits (276), Expect = 4e-29
 Identities = 45/262 (17%), Positives = 75/262 (28%), Gaps = 65/262 (24%)

Query: 7   SQVDTPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL--------GRL 57
            +    P       +  V   G +V+L C    G P+    W ++   L        G  
Sbjct: 2   GRAAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQ 61

Query: 58  HLAIPYTSPE------------------------------------------AQVDTPPV 75
            L +   S E                                                P 
Sbjct: 62  RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPY 121

Query: 76  IL---NNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-----QTIFTGST 127
                    +L       +V+  C A G+P P+ISW +              +      +
Sbjct: 122 WTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWS 181

Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV-EFAPIVTVQSTRIGQ----ALHHDM 182
           L +  +   DRG Y CV +N  G   R+   + V E +P   +    +       L  D+
Sbjct: 182 LVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDV 240

Query: 183 DLDCHIEAYPHPILYWAKDGEI 204
           +  C + +   P + W K  E+
Sbjct: 241 EFHCKVYSDAQPHIQWLKHVEV 262

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  100 bits (249), Expect = 3e-25
 Identities = 42/226 (18%), Positives = 66/226 (29%), Gaps = 59/226 (26%)

Query: 3   TSPESQVDTPPVIL---NNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK------R 53
                     P          +L       +V+  C A G+P P+ISW +N +      R
Sbjct: 110 AEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 169

Query: 54  LGRLH-------LAIPYTSPE-------------------------AQVDTPPVILNNSP 81
           +G +        L +    P                           +    P++    P
Sbjct: 170 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 229

Query: 82  QLSVAKEGQSVQLECHAEGHPIPTISWRRE----NNAILPNGQTIFT------------- 124
               A  G  V+  C       P I W +      + + P+G    T             
Sbjct: 230 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKE 289

Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ 170
              L +  +T ED G Y C+A N IG  +     + V  A    V+
Sbjct: 290 LEVLSLHNVTFEDAGEYTCLAGNSIGF-SHHSAWLVVLPAEEELVE 334

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 95.8 bits (238), Expect = 1e-23
 Identities = 25/175 (14%), Positives = 50/175 (28%), Gaps = 25/175 (14%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQIP 131
            P       +  V   G +V+L C    G P+    W ++   ++P+ + +     LQ+ 
Sbjct: 7   VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVL 66

Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKV------------------------EFAPIV 167
             + ED GAY C  +          + V                           +    
Sbjct: 67  NASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPE 126

Query: 168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGT 222
            +    +     + +   C     P P + W K+G     +           + +
Sbjct: 127 RMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWS 181

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  107 bits (269), Expect = 5e-29
 Identities = 47/205 (22%), Positives = 72/205 (35%), Gaps = 47/205 (22%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----GRLHLAIP-- 62
              PP I+       V + G      C A G P P+I WR+N K++     R  +     
Sbjct: 3   GAHPPEIIRKPQNQGV-RVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61

Query: 63  ------------------YT-----------SPEAQVD---------TPPVILNNSPQLS 84
                             Y            S +A +            PVI    P   
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQG-PGTR 120

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYC 143
           V + G +V + C A G+P P I W +    +  +  +       LQI    +ED+G Y C
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYEC 180

Query: 144 VAQNGIGRGARRKIEVKVEFAPIVT 168
           VA+N +G    +   + V+   + T
Sbjct: 181 VAENSMGTEHSKATNLYVKVRRVGT 205

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score =  102 bits (255), Expect = 5e-27
 Identities = 36/163 (22%), Positives = 54/163 (33%), Gaps = 15/163 (9%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGS 126
              PP I+   PQ    + G      C A G P P+I WR+    +         +    
Sbjct: 3   GAHPPEIIR-KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61

Query: 127 TLQIPRIT----KEDRGAYYCVAQNGIGRGARRKIEVKV-------EFAPIVTVQSTRIG 175
            + I RI       D   Y CVA+NG+G        + +          P++T       
Sbjct: 62  GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121

Query: 176 QALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
             + H + + C     P P +YW K+   V           G 
Sbjct: 122 IEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGF 164

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score =  106 bits (266), Expect = 8e-29
 Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 46/201 (22%)

Query: 6   ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP--TISWRRNFKRL--------- 54
                  P       ++ V KEG+ + L C    H     +  W  N   +         
Sbjct: 2   PGSGYLDPFPPEERPEVRV-KEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRF 60

Query: 55  -----GRLHLA----------------------------IPYTSPEAQVDTPPVILNNSP 81
                G L++A                                 PE      P  +    
Sbjct: 61  VSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF 120

Query: 82  QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
           +   A  GQ+V LEC A G+P+P I WR+    +    +   +G+ L+I  I  ED G Y
Sbjct: 121 KDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIY 180

Query: 142 YCVAQNGIGRGARRKIEVKVE 162
            C A+N  G+  + +  + V+
Sbjct: 181 ECEAENIRGK-DKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 82.2 bits (203), Expect = 1e-19
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 16/158 (10%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIP--TISWRRENNAILPNGQ----TIFTGS 126
            P      P++ V KEG+ + L C    H     +  W      +            T  
Sbjct: 8   DPFPPEERPEVRV-KEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV---------EFAPIVTVQSTRIGQA 177
            L I  +   D+G Y C   +     +     + +          +   + VQ   +   
Sbjct: 67  NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126

Query: 178 LHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISN 215
           +  ++ L+C     P P + W K  E + +    S S 
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG 164

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  106 bits (266), Expect = 1e-28
 Identities = 40/181 (22%), Positives = 61/181 (33%), Gaps = 44/181 (24%)

Query: 24  VAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRLHLAIPYTSPE-- 67
           V  EG +   E H  G P+P +SW R+ + +              GR  L IP  +    
Sbjct: 16  VVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANS 75

Query: 68  ----------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT 105
                                      PP  +    Q    ++G  V+L+    G P P 
Sbjct: 76  GRYSLKATNGSGQATSTAELLVKAETAPPNFVQ-RLQSMTVRQGSQVRLQVRVTGIPTPV 134

Query: 106 ISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
           + + R+   I  +     +      +L I     ED G Y   A N +GR A    E+ V
Sbjct: 135 VKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR-ATSTAELLV 193

Query: 162 E 162
           +
Sbjct: 194 Q 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  104 bits (261), Expect = 4e-28
 Identities = 41/168 (24%), Positives = 62/168 (36%), Gaps = 23/168 (13%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------GS 126
            P       Q  V  EG +   E H  G P+P +SW R+   I  +             +
Sbjct: 5   APTFTQ-PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRA 63

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE---FAPIVTV----QSTRIGQALH 179
            L IP +TK + G Y   A NG G+ A    E+ V+     P         + R G    
Sbjct: 64  KLTIPAVTKANSGRYSLKATNGSGQ-ATSTAELLVKAETAPPNFVQRLQSMTVRQGS--- 119

Query: 180 HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
             + L   +   P P++ + +DG  + +     I    + EG   SL 
Sbjct: 120 -QVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQI----SQEGDLYSLL 162

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score =  106 bits (266), Expect = 1e-28
 Identities = 39/203 (19%), Positives = 61/203 (30%), Gaps = 51/203 (25%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--GRLHLAIP---- 62
            +TPP         +    G      C A G P P I W +  K++   R  +       
Sbjct: 3   GETPPRFTRTPVDQTG-VSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61

Query: 63  -----------------YT-------------------SPEAQVDTPPVILNNSPQLSVA 86
                            Y                      +      P I    PQL V 
Sbjct: 62  GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDM-GPQLKVV 120

Query: 87  KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-------TIFTGSTLQIPRITKEDRG 139
           +  ++  + C A G+P P I+W ++   +  +            +   LQI +  + D+G
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQG 180

Query: 140 AYYCVAQNGIGRGARRKIEVKVE 162
            Y CVA N  G        + V 
Sbjct: 181 KYECVATNSAGTRYSAPANLYVR 203

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 97.2 bits (242), Expect = 4e-25
 Identities = 37/171 (21%), Positives = 53/171 (30%), Gaps = 16/171 (9%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----T 124
            +TPP     +P       G      C A G P P I W ++   +      +      +
Sbjct: 3   GETPPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61

Query: 125 GSTLQI-PRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH---- 179
           GS L+I P  T  D   Y CVA N +G        + V     +      I         
Sbjct: 62  GSVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120

Query: 180 ---HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
                  + C     P P + W KD   V     +          + G+LQ
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQ-LRSESIGALQ 170

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 3   TSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL 54
              +      P I     QL V +  ++  + C A G+P P I+W ++F  +
Sbjct: 99  LREDQIPRGFPTIDM-GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPV 149

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  112 bits (280), Expect = 1e-28
 Identities = 47/248 (18%), Positives = 79/248 (31%), Gaps = 52/248 (20%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK------------------- 52
             V+L+ S  + +   G+ + L C A       I +   +                    
Sbjct: 224 YDVVLSPSHGIEL-SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 282

Query: 53  ---RLGRLHLAIP---------YT------------SPEAQVDTPPVI--LNNSPQLSVA 86
              +     L I          YT            S   +V   P +   +    L  A
Sbjct: 283 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEA 342

Query: 87  KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
             G+ V++     G+P P I W + N   L +  TI  G  L I  +++ D G Y  +  
Sbjct: 343 TVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILT 401

Query: 147 NGIGRG-ARRKIEVKVEFAPIV---TVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKD 201
           N I +      + + V   P +   ++ S            L C + A P P  ++W   
Sbjct: 402 NPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQ 461

Query: 202 GEIVVNDE 209
            E    +E
Sbjct: 462 LEEECANE 469

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  102 bits (254), Expect = 4e-25
 Identities = 32/256 (12%), Positives = 65/256 (25%), Gaps = 53/256 (20%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-----------FKRLGRLHLA 60
             V   +        + ++V + C      +      R                 +    
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT 186

Query: 61  IPYTSPE------------------------AQVDTPPVILNNSPQLSVAKEGQSVQLEC 96
           IP                                     ++ +         G+ + L C
Sbjct: 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 246

Query: 97  HAEGHPIPTISW--------------RRENNAILPNGQTIFTGSTLQIPRITKEDRGAYY 142
            A       I +                 +       +     STL I  +T+ D+G Y 
Sbjct: 247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 306

Query: 143 CVAQNGIGRGARRKIEVKVEFAPIVTV---QSTRIGQALHHDMDLDCHIEAYPHPILYWA 199
           C A +G+    +    V+V   P V       + +   +   + +      YP P + W 
Sbjct: 307 CAASSGLMT-KKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWY 365

Query: 200 KDGEIVVNDEYHSISN 215
           K+G  + ++      +
Sbjct: 366 KNGIPLESNHTIKAGH 381

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  100 bits (251), Expect = 1e-24
 Identities = 49/278 (17%), Positives = 71/278 (25%), Gaps = 74/278 (26%)

Query: 8   QVDTPPVILNNSTQLSV--AKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH------- 58
           +V   P +   S   S+  A  G+ V++     G+P P I W +N   L   H       
Sbjct: 323 RVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV 382

Query: 59  LAIPYTSPE--------A---------------QVDTPPVILNNS--PQLSVAKEGQSVQ 93
           L I   S                           V  PP I   S    +   + G +  
Sbjct: 383 LTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQT 442

Query: 94  LECHAEGHPIP-TISWRRENNAILPNGQTIF----------------------------- 123
           L C     P P  I W  +      N  +                               
Sbjct: 443 LTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKN 502

Query: 124 --------TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIG 175
                     +   +          Y C A N +GR   R I   V   P +T+Q     
Sbjct: 503 QFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR-GERVISFHVTRGPEITLQPDMQ- 560

Query: 176 QALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSI 213
                 + L C  +      L W K G   +      +
Sbjct: 561 PTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGEL 598

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 98.3 bits (244), Expect = 9e-24
 Identities = 39/217 (17%), Positives = 66/217 (30%), Gaps = 63/217 (29%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------- 54
            V   P I           E +SV L C A+      ++W +   +              
Sbjct: 546 HVTRGPEITLQPDM--QPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVC 603

Query: 55  -------------------GRLHLAIPYTSPE-------------------------AQV 70
                                L + +   S +                            
Sbjct: 604 KNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE 663

Query: 71  DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--GSTL 128
              P I  N  +      G+S+++ C A G+P P I W ++N  ++ +   +       L
Sbjct: 664 RVAPTITGN-LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL 722

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
            I R+ KED G Y C A + +G  A+ +    +E A 
Sbjct: 723 TIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQ 758

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 95.6 bits (237), Expect = 7e-23
 Identities = 33/178 (18%), Positives = 61/178 (34%), Gaps = 29/178 (16%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG--- 125
            V   P I    P +    E +SV L C A+      ++W +     LP           
Sbjct: 546 HVTRGPEITL-QPDMQPT-EQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVC 603

Query: 126 ---------------------STLQIPRITKEDRGAYYCVAQNGIGRG---ARRKIEVKV 161
                                  +++   + +D+G Y C+AQ+   +      R++ V  
Sbjct: 604 KNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE 663

Query: 162 EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
             AP +T        ++   +++ C     P P + W KD E +V D    + +   +
Sbjct: 664 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN 721

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 93.7 bits (232), Expect = 4e-22
 Identities = 29/254 (11%), Positives = 63/254 (24%), Gaps = 47/254 (18%)

Query: 11  TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH------------ 58
             P +      L++ K   ++Q+ C   G       W  N     +              
Sbjct: 30  DLPRLSIQKDILTI-KANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCK 86

Query: 59  -LAIPYTSPE-------------------------AQVDTPPVILNNSPQLSVAKEGQSV 92
            L IP                                     V   +        + ++V
Sbjct: 87  TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146

Query: 93  QLECHAEGHPIP-TISWRRENNAILPNGQTIFT--GSTLQIPRITKEDRGAYYCVAQNGI 149
            + C      +  ++  R      +P+G  I         IP       G  +C A+   
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKIND 206

Query: 150 G---RGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV 206
                     + V      +V   S  I  ++   + L+C      +  + +  +     
Sbjct: 207 ESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSK 266

Query: 207 NDEYHSISNFGTSE 220
           +     ++    ++
Sbjct: 267 HQHKKLVNRDLKTQ 280

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  105 bits (263), Expect = 2e-28
 Identities = 32/186 (17%), Positives = 55/186 (29%), Gaps = 51/186 (27%)

Query: 24  VAKEGQSVQLECHAEGHPIPTISWRRN-----------------------------FKRL 54
           + K+G +V+L C A         W+ +                                 
Sbjct: 6   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65

Query: 55  GRLHLAIPYTSPE-------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH 101
           G   L I     E              +V      L  +    +  +GQS+ L   +   
Sbjct: 66  GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL-LQGQSLTLTLESPPG 124

Query: 102 PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
             P++  R       P G+ I  G TL + ++  +D G + C       +    KI++ V
Sbjct: 125 SSPSVQCRS------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVV 177

Query: 162 -EFAPI 166
             F   
Sbjct: 178 LAFQKA 183

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 78.1 bits (192), Expect = 4e-18
 Identities = 27/168 (16%), Positives = 47/168 (27%), Gaps = 33/168 (19%)

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--------------------- 123
           + K+G +V+L C A         W+  N   +   Q  F                     
Sbjct: 6   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65

Query: 124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD 183
               L I  +  ED   Y C  ++           +       +       GQ+L     
Sbjct: 66  GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHL-----LQGQSLT---- 116

Query: 184 LDCHIEAYPHPILYWAK-DGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
           L         P +      G+ +   +  S+S     +  +G+  C V
Sbjct: 117 LTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQD--SGTWTCTV 162

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 6   ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN 50
           E Q+    +  N+ T L    +GQS+ L   +     P++  R  
Sbjct: 93  EVQLLVFGLTANSDTHL---LQGQSLTLTLESPPGSSPSVQCRSP 134

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  105 bits (264), Expect = 2e-28
 Identities = 49/202 (24%), Positives = 72/202 (35%), Gaps = 46/202 (22%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------- 54
           Q D PP I+ + + L V+ +G+   L C AEG P PTI W +  +R+             
Sbjct: 5   QEDFPPRIVEHPSDLIVS-KGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63

Query: 55  ---GRLHLAIPYTSPEAQVDT--------------------------PPVILNNSPQLSV 85
              G L         +++ D                                 N P   +
Sbjct: 64  LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQN-PSDVM 122

Query: 86  AKEGQSVQLECHA-EGHPIPTISWRRENNAILPN-GQTIFTGSTLQIPRITKEDRGAYYC 143
              G+   +EC    GHP PTISW+++ + +     +    G  L I    K D G Y C
Sbjct: 123 VAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVC 182

Query: 144 VAQNGIGRGARRKIEVKVEFAP 165
           V  N +G       E+ V   P
Sbjct: 183 VGTNMVGERESEVAELTVLERP 204

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 99.5 bits (248), Expect = 5e-26
 Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 14/163 (8%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ------TI 122
           Q D PP I+   P   +  +G+   L C AEG P PTI W +    +  +         +
Sbjct: 5   QEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63

Query: 123 FTGSTLQIPRI-----TKEDRGAYYCVAQNGIGRGARRKIEVKV-EFAPIVTVQSTRIGQ 176
               +L   RI     ++ D G Y CVA+N +G        ++V           + +  
Sbjct: 64  LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMV 123

Query: 177 ALHHDMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
           A+     ++C     +P P + W KDG  + + +       G 
Sbjct: 124 AVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK 166

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  110 bits (277), Expect = 2e-28
 Identities = 30/247 (12%), Positives = 67/247 (27%), Gaps = 43/247 (17%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-----------GR 56
           +  +   +   +          S+ L+   +     +  W      L           G 
Sbjct: 45  RPQSSGTVYEAAAV--EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV 102

Query: 57  LHLAIPYTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQLE 95
           + + I   +                         +    +     P     +      L 
Sbjct: 103 VSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMEN--QDALV 160

Query: 96  CHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARR 155
           C +E  P P + W   ++      +        +   + +       C A+N +GR   R
Sbjct: 161 CISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTR 220

Query: 156 KIEVKVEFAPIVTVQST--RIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVNDEYHS 212
              + +   P  T+     ++G+ L     + C      H   L W  + + +    Y  
Sbjct: 221 LFTIDLNQTPQTTLPQLFLKVGEPLW----IRCKAVHVNHGFGLTWELENKALEEGNYFE 276

Query: 213 ISNFGTS 219
           +S + T+
Sbjct: 277 MSTYSTN 283

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  110 bits (275), Expect = 4e-28
 Identities = 32/257 (12%), Positives = 64/257 (24%), Gaps = 50/257 (19%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRLGRLH-------- 58
            ++  P        L   K G+ + + C A   +    ++W    K L   +        
Sbjct: 225 DLNQTPQTTLPQLFL---KVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281

Query: 59  ----------LAIP---------YT---------SPEAQVDTPPVI-LNNSPQLSVAKEG 89
                       +          YT         S    +     I   NS +     + 
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQY 341

Query: 90  QSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGI 149
           +        + +P    +W     +     + +  G ++      K   G Y   A+N  
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401

Query: 150 GRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE 209
                +   + +   P V  +++             C  + YP P   W K  +   N  
Sbjct: 402 A-QFTKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKCSDKSPNCT 452

Query: 210 YHSISNFGTSEGTTGSL 226
                     +      
Sbjct: 453 EEITEGVWNRKANRKVF 469

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  108 bits (270), Expect = 2e-27
 Identities = 30/248 (12%), Positives = 64/248 (25%), Gaps = 44/248 (17%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH--------- 58
            +    +           +      L C +E  P P + W     +              
Sbjct: 136 SIRNTLLYTLRRPYFRKMEN--QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKK 193

Query: 59  --------LAIPYT-----------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA- 98
                                    +    +D         PQL + K G+ + + C A 
Sbjct: 194 EEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFL-KVGEPLWIRCKAV 252

Query: 99  EGHPIPTISWRRENNAILPN----------GQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148
             +    ++W  EN A+              +T+       +  + + D G Y C +   
Sbjct: 253 HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH 312

Query: 149 IGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND 208
             + A   + +  +     T  S       + +       +AYP     W    +    +
Sbjct: 313 PSQSAL--VTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCE 370

Query: 209 EYHSISNF 216
           +    + +
Sbjct: 371 QKGLDNGY 378

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 93.6 bits (232), Expect = 3e-22
 Identities = 20/168 (11%), Positives = 53/168 (31%), Gaps = 12/168 (7%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG--- 125
           +  +   +   +          S+ L+   +     +  W  +++++             
Sbjct: 45  RPQSSGTVYEAAAV--EVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGV 102

Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLD 185
            ++ I ++T+   G Y    Q+           V +    + T++     + + +   L 
Sbjct: 103 VSMVILKMTETQAGEYLLFIQSEAT-NYTILFTVSIRNTLLYTLRRPYF-RKMENQDALV 160

Query: 186 CHIEAYPHPILYWAKDGEIV--VNDEYHSISNFGT---SEGTTGSLQC 228
           C  E+ P PI+ W           +E  ++         E     ++C
Sbjct: 161 CISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRC 208

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 82.4 bits (203), Expect = 2e-18
 Identities = 26/218 (11%), Positives = 57/218 (26%), Gaps = 55/218 (25%)

Query: 8   QVDTPPVI-LNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------GRLH 58
            +     I   NS++     + +        + +P    +W  + K              
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS 379

Query: 59  LAIPYTSPE--------AQ-------------VDTPPVILNNSPQLSVAKEGQSVQLECH 97
           ++               A+             +   P +L          E  + Q  C 
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVL---------AEASASQASCF 430

Query: 98  AEGHPIPTISWRRENNAILPNGQTIFTG---------------STLQIPRITKEDRGAYY 142
           ++G+P+P+ +W++ ++      + I  G               S+  +            
Sbjct: 431 SDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVK 490

Query: 143 CVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHH 180
           C A N +G  +   I +                   HH
Sbjct: 491 CCAYNSLGT-SCETILLNSPGPFPFIQDGGTKHHHHHH 527

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 8/84 (9%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI 195
               +Y  V+++    G   + +     +     ++  +   +   + L   ++A  +  
Sbjct: 25  GKSSSYPMVSESPEDLGCALRPQ-----SSGTVYEAAAVEVDVSASITLQVLVDAPGNIS 79

Query: 196 LYWAKDGEIVVNDEYHSISNFGTS 219
             W      +    +  + N G  
Sbjct: 80  CLWVFKHSSLNCQPHFDLQNRGVV 103

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score =  104 bits (261), Expect = 1e-27
 Identities = 42/232 (18%), Positives = 69/232 (29%), Gaps = 59/232 (25%)

Query: 4   SPESQVDT-PPVILN---NSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----- 54
            P++ VDT  P          +L       +V+  C A G+P P+ISW +N +       
Sbjct: 2   DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61

Query: 55  --------GRLHLAIPYTSPE-------------------------AQVDTPPVILNNSP 81
                    +  L +    P                           +    P++    P
Sbjct: 62  IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 121

Query: 82  QLSVAKEGQSVQLECHAEGHPIPTISWRRENNA----ILPNGQTIFT------------G 125
               A  G  V+  C       P I W +        + P+G    T             
Sbjct: 122 ANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEAD 181

Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQA 177
             L++  +++ D G Y C A N IG  A +   + V        +     +A
Sbjct: 182 VRLRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAEEELVEADEA 232

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 96.2 bits (239), Expect = 2e-24
 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 23/181 (12%)

Query: 65  SPEAQVDT-PPVILN---NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ 120
            P+  VDT  P          +L       +V+  C A G+P P+ISW +         +
Sbjct: 2   DPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHR 61

Query: 121 T-----IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE---------FAPI 166
                      +L +  +   DRG Y CV +N  G   R+   + V           A +
Sbjct: 62  IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGL 120

Query: 167 VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSL 226
              Q+  +G     D++  C + +   P + W K  E+  +      + + T   +  S 
Sbjct: 121 PANQTAVLGS----DVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISE 176

Query: 227 Q 227
            
Sbjct: 177 S 177

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  102 bits (256), Expect = 2e-27
 Identities = 31/156 (19%), Positives = 47/156 (30%), Gaps = 11/156 (7%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILPNGQTIFT------- 124
              + +  P       G+S    C   G      ISW   N   L   Q   +       
Sbjct: 2   VLQV-DIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDL 184
            STL I     +D G Y CV     G  +   + VK+    +     T        D  +
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120

Query: 185 DCHIEAYPHPILYWAKDGEIVV--NDEYHSISNFGT 218
            C + +   P + W   G  V+   D    + +   
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 156

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 97.6 bits (243), Expect = 2e-25
 Identities = 31/192 (16%), Positives = 55/192 (28%), Gaps = 44/192 (22%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHP-IPTISWRRN---------------FKRLG 55
              +    +Q  ++  G+S    C   G      ISW                  +    
Sbjct: 2   VLQVDIVPSQGEIS-VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 56  RLHLAIPYTSPE--------AQ--------------VDTPPVILNNSPQLSVAKEGQSVQ 93
              L I   + +                        +    +  N +P     KEG+   
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKN-APTPQEFKEGEDAV 119

Query: 94  LECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
           + C       PTI W+ +   ++        + + + LQI  I K D G Y C  +    
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 151 RGARRKIEVKVE 162
            G     +++V 
Sbjct: 180 -GEINFKDIQVI 190

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  102 bits (256), Expect = 3e-27
 Identities = 27/157 (17%), Positives = 51/157 (32%), Gaps = 13/157 (8%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------GS 126
            P       +    +   +  L C   GHP P + W R+   I+ +G             
Sbjct: 4   APHFKE-ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE-----FAPIVTVQSTRIGQALHHD 181
            L I  +T +D   Y   A N  G        ++VE       P        +       
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 182 MDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
           + +       P P++ W K  +++ N+ ++ +    +
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS 158

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  100 bits (251), Expect = 1e-26
 Identities = 38/195 (19%), Positives = 62/195 (31%), Gaps = 46/195 (23%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRL 57
            P        L+V +   +  L C   GHP P + W R  K +              G  
Sbjct: 4   APHFKEELRNLNV-RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 58  HLAIP---------------------YTSPEAQVDTPPVILN----NSPQLSVAKEGQSV 92
            L I                        +   +V+ P  I             A  G+ V
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122

Query: 93  QLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQN 147
            ++    G P P I+W++  + I  NG           S +    + ++D G Y   A+N
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182

Query: 148 GIGRGARRKIEVKVE 162
             G   ++ +E+ V 
Sbjct: 183 RFGI-DQKTVELDVA 196

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  107 bits (268), Expect = 4e-27
 Identities = 39/268 (14%), Positives = 72/268 (26%), Gaps = 54/268 (20%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------GRLH 58
           V  P  +      L   KE     + C      +   S +    +            +  
Sbjct: 111 VRDPAKLFLVDRSLYG-KEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAG 169

Query: 59  LAIP---------------------YTSPEAQV------DTPPVILNNSPQLSVAKEGQS 91
           + I                        S +  +         PV+  +     + +EG+ 
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLL-REGEE 228

Query: 92  VQLECHAEGHPIPT-ISWRRENNAILPNGQ---------TIFTGSTLQIPRITKEDRGAY 141
             + C  +        +W+REN+      +              +TL I      D G +
Sbjct: 229 FTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVF 288

Query: 142 YCVAQNGIGRGARRKIEVKVEFAPIVTV---QSTRIGQALHHDMDLDCHIEAYPHPILY- 197
            C A N  G  A     ++V     + +    +T +      ++DL    EA+P P    
Sbjct: 289 MCYANNTFGS-ANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQ 347

Query: 198 WAKDGEIVVNDEYHSISNFGTSEGTTGS 225
           W        +       +   S     S
Sbjct: 348 WIYMNRTFTDKWEDYPKSENESNIRYVS 375

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  105 bits (263), Expect = 2e-26
 Identities = 36/258 (13%), Positives = 60/258 (23%), Gaps = 59/258 (22%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPT-ISWRRN----------------- 50
               PV+  +     + +EG+   + C  +        +W+R                  
Sbjct: 208 FKAVPVVSVSKASYLL-REGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGD 266

Query: 51  FKRLGRLHLAIPYTSPE---------------------AQVDTPPVILNNSPQLSV--AK 87
           F    +  L I                            +V     I       +     
Sbjct: 267 FNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVN 326

Query: 88  EGQSVQLECHAEGHPIPT-ISWRRENNAILPNG---------QTIFTGSTLQIPRITKED 137
           +G++V L    E  P P    W   N                  I   S L + R+   +
Sbjct: 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTE 386

Query: 138 RGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY 197
            G Y  +  N     A     V V   P +             +  L C    +P P + 
Sbjct: 387 GGTYTFLVSNSDVN-AAIAFNVYVNTKPEILTYDR------LVNGMLQCVAAGFPEPTID 439

Query: 198 WAKDGEIVVNDEYHSISN 215
           W              +  
Sbjct: 440 WYFCPGTEQRCSASVLPV 457

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 96.3 bits (239), Expect = 3e-23
 Identities = 32/248 (12%), Positives = 61/248 (24%), Gaps = 36/248 (14%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRL----HLAIPY 63
              +PP I    + L V + G  ++L C   G     + W                    
Sbjct: 32  GEPSPPSIHPGKSDLIV-RVGDEIRLLCTDPG----FVKWTFEILDETNENKQNEWITEK 86

Query: 64  TSPE------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT 105
                                   V  P  +     +    KE     + C      +  
Sbjct: 87  AEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFL-VDRSLYGKEDNDTLVRCPLTDPEVTN 145

Query: 106 ISWRRENNAILPNGQTIFTGS--TLQIPRITK-EDRGAYYCVAQNGIGRGARRKIEVKV- 161
            S +      LP            + I  + +   R   +C            K  +KV 
Sbjct: 146 YSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR 205

Query: 162 ---EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVNDEYHSISNFG 217
              +  P+V+V           +  + C I+     +   W ++       E ++  + G
Sbjct: 206 PAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHG 265

Query: 218 TSEGTTGS 225
                  +
Sbjct: 266 DFNYERQA 273

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 85.5 bits (211), Expect = 2e-19
 Identities = 29/213 (13%), Positives = 50/213 (23%), Gaps = 51/213 (23%)

Query: 8   QVDTPPVILNNSTQLSV--AKEGQSVQLECHAEGHPIPT-ISWRRNFKRLGRLHLAIPYT 64
           +V     I       +     +G++V L    E  P P    W    +         P +
Sbjct: 306 EVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKS 365

Query: 65  SPEAQVD-------------------------------TPPVILNNSPQLSVAKEGQSVQ 93
             E+ +                                   V +N  P++       +  
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGM 425

Query: 94  LECHAEGHPIPTISWRRENNAILPNGQTIFTG----------------STLQIPRITKED 137
           L+C A G P PTI W            ++                       I     + 
Sbjct: 426 LQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKH 485

Query: 138 RGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ 170
            G   C A N +G+          +      + 
Sbjct: 486 NGTVECKAYNDVGK-TSAYFNFAFKGNNKEQIH 517

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  101 bits (254), Expect = 6e-27
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 42/191 (21%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-----------GRLH-L 59
            P I      ++  K G++ QL C   G P+P I W R  K L           GR H L
Sbjct: 7   APGIRKEMKDVTT-KLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65

Query: 60  AIP---------------------YTSPEAQVDTPPVIL--NNSPQLSVAKEGQSVQLEC 96
            +                       TS +  +   P         +      G +++L  
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHV 125

Query: 97  HAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKE-DRGAYYCVAQNGIGR 151
              G P+P ++W      +  +           + L +  + ++   G Y     N  G 
Sbjct: 126 MYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGT 185

Query: 152 GARRKIEVKVE 162
                ++V+++
Sbjct: 186 -VDAILDVEIQ 195

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  100 bits (250), Expect = 2e-26
 Identities = 33/152 (21%), Positives = 58/152 (38%), Gaps = 9/152 (5%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTL 128
            P I     +    K G++ QL C   G P+P I W R    ++ + +   +      TL
Sbjct: 7   APGIRK-EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST---RIGQALHHDMDLD 185
            +    +ED G Y C+A N +G       ++ ++  P          +   A+   + L 
Sbjct: 66  TVMTEEQEDEGVYTCIATNEVGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124

Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFG 217
                 P P + W    +++ N E  +I N  
Sbjct: 125 VMYIGRPVPAMTWFHGQKLLQNSENITIENTE 156

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  103 bits (258), Expect = 7e-27
 Identities = 38/254 (14%), Positives = 65/254 (25%), Gaps = 39/254 (15%)

Query: 1   PYTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH-- 58
           P  SP     +PP I    ++L V + G ++ L C         + W         +   
Sbjct: 3   PSASPGE--PSPPSIHPAQSELIV-EAGDTLSLTCIDPD----FVRWTFKTYFNEMVENK 55

Query: 59  ---LAIPYTSPE------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECH 97
                                           V  P  +      L   KE     + C 
Sbjct: 56  KNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFG-KEDSDALVRCP 114

Query: 98  AEGHPIPTISWRRENNAILPNGQTIFTGS--TLQIPRITK-EDRGAYYCVAQNGIGRGAR 154
                +   S    +   LP   T        + I  + +   R    C AQ        
Sbjct: 115 LTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHS 174

Query: 155 RKIEVKV----EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVNDE 209
            K  +KV    +  P+V+V  T           + C I+     +   W K      +  
Sbjct: 175 DKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA 234

Query: 210 YHSISNFGTSEGTT 223
               +++   +   
Sbjct: 235 QVKHNSWHRGDFNY 248

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 84.0 bits (207), Expect = 1e-19
 Identities = 30/202 (14%), Positives = 48/202 (23%), Gaps = 52/202 (25%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN------------------ 50
           V  P  +      L   KE     + C      +   S                      
Sbjct: 88  VRDPAKLFLVGLPLFG-KEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAG 146

Query: 51  --FKRLGRLHLAIPYT-----------SPEAQVD------TPPVILNNSPQLSVAKEGQS 91
              K + R +  +              S +  +         PV+        + K+G +
Sbjct: 147 ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSV-PETSHLLKKGDT 205

Query: 92  VQLECHAEGHPIP-TISWRRENNAILPNGQTIFTG-----------STLQIPRITKEDRG 139
             + C  +         W + N       Q                 TL I     +D G
Sbjct: 206 FTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSG 265

Query: 140 AYYCVAQNGIGRGARRKIEVKV 161
            + C A N  G  A     +KV
Sbjct: 266 VFMCYANNTFGS-ANVTTTLKV 286

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  101 bits (254), Expect = 2e-26
 Identities = 39/231 (16%), Positives = 64/231 (27%), Gaps = 34/231 (14%)

Query: 13  PVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRLGRL--HLAIPYTSPE-- 67
            VI      +SV  + ++V L C     P   +  W  N            I   S    
Sbjct: 2   AVITLQPPWVSVF-QEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDS 60

Query: 68  -----------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH-PIPTISWR 109
                             ++    ++L       V  EG+ + L CHA     +  + + 
Sbjct: 61  GEYRCQRGLSGRSDPIQLEIHRGWLLL--QVSSRVFTEGEPLALRCHAWKDKLVYNVLYY 118

Query: 110 RENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG-RGARRKIEVKVEFAPIVT 168
           R   A           S L I +      G Y+C          A   + VK  F   V 
Sbjct: 119 RNGKAFKFFHW----NSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVL 174

Query: 169 VQSTRIGQALHHDMDLDCHIEAYPH---PILYWAKDGEIVVNDEYHSISNF 216
             S        + + L C  +         LY++           ++ S +
Sbjct: 175 NASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEY 225

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 91.5 bits (227), Expect = 2e-22
 Identities = 38/183 (20%), Positives = 60/183 (32%), Gaps = 32/183 (17%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGH-PIPTISWRRNFKRLGRLH----LAIP 62
           ++    ++L       V  EG+ + L CHA     +  + + RN K     H    L I 
Sbjct: 79  EIHRGWLLL--QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTIL 136

Query: 63  YTSPEA-----------------------QVDTPPVILNNSPQLSVAKEGQSVQLECHAE 99
            T+                          +   P  +LN S    +  EG  V L C  +
Sbjct: 137 KTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLL-EGNLVTLSCETK 195

Query: 100 GHPI-PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE 158
                P +             +   T S  QI    +ED G Y+C A    G   +R  E
Sbjct: 196 LLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPE 255

Query: 159 VKV 161
           +++
Sbjct: 256 LEL 258

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 97.2 bits (242), Expect = 2e-26
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 3/99 (3%)

Query: 65  SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIF 123
           +P A    P ++     +    + G  V   C A+   P  T+ W R +N  LP+    F
Sbjct: 1   APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF 60

Query: 124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
            G  L I  +   D G Y C   N      +    + V+
Sbjct: 61  NG-ILTIRNVQPSDAGTYVCTGSNMFAM-DQGTATLHVQ 97

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  102 bits (256), Expect = 2e-26
 Identities = 41/283 (14%), Positives = 85/283 (30%), Gaps = 73/283 (25%)

Query: 8   QVDTPPVILNNSTQLSV-AKEGQSVQLECHAEG-HPIPTISWRRNFKRL----------G 55
              T P  +     LS       +V L+C          I W ++ + +          G
Sbjct: 3   DPFTGPHFV---EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG 59

Query: 56  RLHLAIPYTSPE---------------------AQVDTPPVILNNSPQLSVAKEGQSVQL 94
              L I   S +                        +    ++       +A     +++
Sbjct: 60  ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELM-MEVCKKIALSATDLKI 118

Query: 95  ECHAEG----------HPIPTISWRRENNAILPNG--QTIFTG--STLQIPRITKEDRGA 140
           +  AEG               ++W    +AI  +   +T  TG    LQI   T  D+G 
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178

Query: 141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD----------------- 183
           Y     +G     ++ +++  +       +  R+ QA   + +                 
Sbjct: 179 YVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 237

Query: 184 ----LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGT 222
               L C++   P P + W K+ + + +D++ ++         
Sbjct: 238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAY 280

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 97.3 bits (242), Expect = 2e-24
 Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 20/172 (11%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFT--G 125
              T P  +             +V L+C          I W ++   I  + +  F    
Sbjct: 3   DPFTGPHFV--EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI 60

Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLD 185
            TL I   +K+D G Y  + ++  G+  + ++++  E    + ++  +       D+ + 
Sbjct: 61  CTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119

Query: 186 CHIEA----------YPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
              E                + W+ +G  +   +           G    LQ
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT----GVTGEQIWLQ 167

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 83.8 bits (207), Expect = 2e-19
 Identities = 32/219 (14%), Positives = 60/219 (27%), Gaps = 60/219 (27%)

Query: 2   YTSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL------ 54
               E  ++    I  ++T L +    + +QL            ++W  N   +      
Sbjct: 96  EAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRV 155

Query: 55  ------GRLHLAIPYTSPE----------------------------------------- 67
                  ++ L I   +P                                          
Sbjct: 156 KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAA 215

Query: 68  AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--- 124
                   +L   P +   +EG+++ L C+  G P P +SW +   A+  +         
Sbjct: 216 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEA 275

Query: 125 --GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
              +   I  ++  D G Y  V +N  G        V V
Sbjct: 276 GRTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSV 313

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score =  100 bits (250), Expect = 4e-26
 Identities = 38/204 (18%), Positives = 58/204 (28%), Gaps = 56/204 (27%)

Query: 4   SPESQVDTPPVILN---NSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK------RL 54
           S  S     P   N      +L       +V+  C A G+P+PT+ W +N K      R+
Sbjct: 7   SENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI 66

Query: 55  GRLH-------LAIPYTSPE-------------------------AQVDTPPVILNNSPQ 82
           G          L +    P                           +    P++    P 
Sbjct: 67  GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126

Query: 83  LSVAKEGQSVQLECHAEGHPIPTISWRRENNA----ILPNGQTIFT-----------GST 127
            +    G  V+  C       P I W +          P+G                   
Sbjct: 127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEV 186

Query: 128 LQIPRITKEDRGAYYCVAQNGIGR 151
           L +  +T+ D G Y C   N IG+
Sbjct: 187 LALFNVTEADAGEYICKVSNYIGQ 210

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 94.2 bits (234), Expect = 1e-23
 Identities = 32/156 (20%), Positives = 54/156 (34%), Gaps = 22/156 (14%)

Query: 65  SPEAQVDTPPVILN---NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-- 119
           S  +     P   N      +L       +V+  C A G+P+PT+ W +           
Sbjct: 7   SENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRI 66

Query: 120 ---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV----EFAPIVTV--- 169
              +      +L +  +   D+G Y CV +N  G        + V       PI+     
Sbjct: 67  GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVVERSRHRPILQAGLP 125

Query: 170 --QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGE 203
              ST +G     D++  C + +   P + W K  E
Sbjct: 126 ANASTVVGG----DVEFVCKVYSDAQPHIQWIKHVE 157

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  102 bits (257), Expect = 6e-26
 Identities = 35/161 (21%), Positives = 64/161 (39%), Gaps = 14/161 (8%)

Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG-------- 125
           P I+    +     E   V L C AEG PIP I+W+R  +                    
Sbjct: 2   PHII--QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 126 ---STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDM 182
              S+L I  +   D G Y C A + IG G ++ + + +E+AP      T       + +
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118

Query: 183 DLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
           ++ C +++ P   ++W +D  ++      ++  + T     
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 96.8 bits (241), Expect = 9e-24
 Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 50/199 (25%)

Query: 13  PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------GRLH---- 58
           P I+    +     E   V L C AEG PIP I+W+R               GR+     
Sbjct: 2   PHII--QLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 59  -----LAIPYTSPE--------A-------------QVDTPPVILNNSPQLSVAKEGQSV 92
                L I              A              ++  P  ++ +  +  + EG  +
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFIS-NQTIYYSWEGNPI 118

Query: 93  QLECHAEGHPIPTISWRRENNAILPNGQTIF------TGSTLQIPRITKEDRGAYYCVAQ 146
            + C  + +P  +I WRR+   +     T            L+I   +  D G Y C A 
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178

Query: 147 NGIGRGARRKIEVKVEFAP 165
           N IG    ++  + +   P
Sbjct: 179 NHIGT-RFQEYILALADVP 196

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 96.1 bits (239), Expect = 1e-24
 Identities = 43/211 (20%), Positives = 70/211 (33%), Gaps = 51/211 (24%)

Query: 4   SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------- 54
           +P +     P I+ + T L V  + +   L C  EG P PTI W ++ + +         
Sbjct: 1   APLAGQYQSPRIIEHPTDLVVK-KNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHR 59

Query: 55  -----GRLHLAIP-----------YT-----------SPEAQVD---TPPVILNNSPQLS 84
                G L                Y            S  A +             P+ +
Sbjct: 60  VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVE-PKDT 118

Query: 85  VAKEGQSVQLECH-AEGHPIPTISWRRENNAILPNG---------QTIFTGSTLQIPRIT 134
              +G++  LEC   +G P PT+ W ++   +               I  G  L I  + 
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVE 178

Query: 135 KEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
             D G Y C+AQN +G       ++ V+   
Sbjct: 179 PIDEGNYKCIAQNLVGTRESSYAKLIVQVKA 209

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 91.8 bits (228), Expect = 6e-23
 Identities = 39/161 (24%), Positives = 64/161 (39%), Gaps = 11/161 (6%)

Query: 65  SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF- 123
           +P A     P I+   P   V K+ +   L C  EG P PTI W ++   +  N +    
Sbjct: 1   APLAGQYQSPRIIE-HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHR 59

Query: 124 ----TGS---TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV-EFAPIVTVQSTRIG 175
                G+      +    ++D G Y+CVA+N +G+   R   +++        V+     
Sbjct: 60  VQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTR 119

Query: 176 QALHHDMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISN 215
            A      L+C   +  P P L W KDG  + + +  S   
Sbjct: 120 VAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA 160

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 96.3 bits (239), Expect = 3e-24
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 37/182 (20%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPE 67
            + + P      T+  V  EG  V ++C A      T++         R  L +  T  +
Sbjct: 94  TIYSFPAPNVILTKPEV-SEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPED 152

Query: 68  A-------------------------QVDTPPVILN-NSPQLSVAKEGQSVQLECHAEGH 101
                                     +V   P +   + P      E       C A G+
Sbjct: 153 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 212

Query: 102 PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
           P+P +   ++    LP G         +   +T++  G Y C A++  G    R++ V V
Sbjct: 213 PLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCRARSTQGE-VTREVTVNV 262

Query: 162 EF 163
             
Sbjct: 263 LS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 68.5 bits (167), Expect = 5e-14
 Identities = 35/236 (14%), Positives = 64/236 (27%), Gaps = 53/236 (22%)

Query: 11  TPPVILNNSTQLSVAKEGQSVQLECHAEGH---PIPTISWRRNFKRL-------GRLHLA 60
           TPP +        V +      + C  +G        +      +RL            A
Sbjct: 5   TPPQL----VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 60

Query: 61  IPYTSPEAQ-------------------------VDTPPVILNNSPQLSVAKEGQSVQLE 95
               S  A+                         + + P       +  V  EG  V ++
Sbjct: 61  KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV-SEGTEVTVK 119

Query: 96  CHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARR 155
           C  E HP   ++            Q +   + L +    +++  ++ C A   +      
Sbjct: 120 C--EAHPRAKVTLNGVP------AQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIH 171

Query: 156 K---IEVKVEFAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAKDGEIVV 206
           K    E++V + P +  +                 C     P P L   KDG   +
Sbjct: 172 KNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL 227

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 54.3 bits (130), Expect = 4e-09
 Identities = 25/166 (15%), Positives = 47/166 (28%), Gaps = 16/166 (9%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGH---PIPTISWRRENNAILPN---GQTIFTG 125
           TPP +   SP+  V +      + C  +G        +     +  + P    G   F+ 
Sbjct: 5   TPPQL--VSPR--VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 60

Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDL 184
                     E      C    G       + + +    AP V +    +  +   ++ +
Sbjct: 61  KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV--SEGTEVTV 118

Query: 185 DCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
            C  EA+P   +         +      +    T E    S  C  
Sbjct: 119 KC--EAHPRAKVTLNGVPAQPLGPRAQLLLK-ATPEDNGRSFSCSA 161

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 96.8 bits (240), Expect = 5e-24
 Identities = 36/275 (13%), Positives = 77/275 (28%), Gaps = 54/275 (19%)

Query: 4   SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPI---------PTISWRRNFKRL 54
             +      P  +   T   +A  G+    +C      +           ++W +  K  
Sbjct: 20  PAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTR 79

Query: 55  GRLHLAIP-----------------YT-------------SPEAQVDTPPVILNNSPQLS 84
             L+  +                  Y                 + +  PP  +  + +L 
Sbjct: 80  RPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELG 139

Query: 85  VAKEGQSVQLECH-AEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYY 142
              +   + L C          I+W + N  ++ +G +   +G  L I     ED G Y 
Sbjct: 140 TH-DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYD 198

Query: 143 CVAQNGIGRG-----ARRKIEVKV---EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP 194
           C       R        R   + V   +      +   +I   +    ++ C   +    
Sbjct: 199 CYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLL 258

Query: 195 ----ILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
               ++ W      ++  ++   S   +S G T +
Sbjct: 259 VDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEA 293

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 82.6 bits (203), Expect = 8e-19
 Identities = 23/170 (13%), Positives = 49/170 (28%), Gaps = 12/170 (7%)

Query: 60  AIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI---------PTISWRR 110
                  +      P  +       +A  G+    +C      +           ++W +
Sbjct: 15  MRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEK 74

Query: 111 ENNAILPNGQTIFTGSTLQIPRITKEDRGAYY-CVAQNGIGRGARRKIEVKVEFAPIVTV 169
                 P  + +     L I   T  D    Y C      G   +  +   +   P    
Sbjct: 75  IGKTRRPLNRRV-KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIP 133

Query: 170 QSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
           ++  +G    + +DL C I  A  +  + W K+ + ++ D      +   
Sbjct: 134 ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN 183

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 79.9 bits (196), Expect = 7e-18
 Identities = 31/209 (14%), Positives = 56/209 (26%), Gaps = 57/209 (27%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECH-AEGHPIPTISWRRNFKRL---------GRL 57
            +  PP  +  + +L    +   + L C          I+W +N + L            
Sbjct: 124 HIRKPPSCIPETYELGTH-DKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ 182

Query: 58  HLAIPYTSPE------------------------------AQVDTPPVILNNSPQLSVAK 87
           +L I     E                                       L   P+++V  
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVT- 241

Query: 88  EGQSVQLECHAEGHPIP----TISWRRENNAILPNGQTIFT---------GSTLQIPRIT 134
            G+   + C A    +      I W   +  I+     +++          +TL    +T
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT 301

Query: 135 KEDRGAYY-CVAQNGIGRGARRKIEVKVE 162
           +E  G  Y C   N           V +E
Sbjct: 302 EEYIGNTYTCRGHNYYFD-KTLTTTVVLE 329

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 91.8 bits (228), Expect = 2e-23
 Identities = 26/174 (14%), Positives = 51/174 (29%), Gaps = 29/174 (16%)

Query: 11  TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRLGRL--HLAIPYTSPE 67
            P  +L          +  SV L C     P   +I W  N   +            +  
Sbjct: 2   PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN 61

Query: 68  -------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTIS 107
                                V    ++L         +EG+++ L CH+    P+  ++
Sbjct: 62  DSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPH--LEFQEGETIMLRCHSWKDKPLVKVT 119

Query: 108 WRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
           + +   +   +        T  IP+      G Y+C    G    + + + + V
Sbjct: 120 FFQNGKSQKFSH----LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 71.4 bits (175), Expect = 8e-16
 Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 12/136 (8%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTGSTLQI 130
            P  +L   P      +  SV L C     P   +I W    N I  + Q          
Sbjct: 2   PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ------PSYR 55

Query: 131 PRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEA 190
            +    D G Y C             + + V F  +V        Q     + L CH   
Sbjct: 56  FKANNNDSGEYTCQTGQTSLSDP---VHLTVLFEWLVLQTPHLEFQE-GETIMLRCHSWK 111

Query: 191 YPHPILY-WAKDGEIV 205
               +   + ++G+  
Sbjct: 112 DKPLVKVTFFQNGKSQ 127

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 94.1 bits (234), Expect = 4e-23
 Identities = 28/162 (17%), Positives = 53/162 (32%), Gaps = 13/162 (8%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI------FTGS 126
            P       +    +   +  L C   GHP P + W R+   I+ +G             
Sbjct: 4   APHFKEE-LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQA-----LHHD 181
            L I  +T +D   Y   A N  G        ++VE    + +  T  G           
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121

Query: 182 MDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
           + +       P P++ W K  +++ N+ ++ +    +     
Sbjct: 122 VSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLV 163

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 92.9 bits (231), Expect = 9e-23
 Identities = 41/194 (21%), Positives = 63/194 (32%), Gaps = 46/194 (23%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRL 57
            P        L+V +   +  L C   GHP P + W R  K +              G  
Sbjct: 4   APHFKEELRNLNV-RYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 58  HLAIP---------YT----------SPEAQ--VDTPPVI----LNNSPQLSVAKEGQSV 92
            L I          Y           S  A   V+ P  I             A  G+ V
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122

Query: 93  QLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQN 147
            ++    G P P I+W++  + I  NG           S +    + ++D G Y   A+N
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182

Query: 148 GIGRGARRKIEVKV 161
             G   ++ +E+ V
Sbjct: 183 RFGI-DQKTVELDV 195

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 11  TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL 54
             P  L     +     G+ V ++    G P P I+W++    +
Sbjct: 103 HLPKTLEGMGAVHA-LRGEVVSIKIPFSGKPDPVITWQKGQDLI 145

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 89.1 bits (221), Expect = 4e-23
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 12/113 (10%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ------TI 122
           Q D PP I+   P   +  +G+   L C AEG P PTI W +    +  +         +
Sbjct: 5   QEDFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRML 63

Query: 123 FTGSTLQIPRI-----TKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ 170
               +L   RI     ++ D G Y CVA+N +G        ++V  A      
Sbjct: 64  LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHH 116

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 88.2 bits (219), Expect = 8e-23
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--GS 126
                P I  N  +      G+S+++ C A G+P P I W ++N  ++ +   +      
Sbjct: 6   LERVAPTITGN-LENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR 64

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT 168
            L I R+ KED G Y C A + +G  A+ +    +E A   T
Sbjct: 65  NLTIRRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQEKT 105

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 8  QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN 50
               P I  N    +    G+S+++ C A G+P P I W ++
Sbjct: 6  LERVAPTITGNLENQTT-SIGESIEVSCTASGNPPPQIMWFKD 47

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 155 RKIEVKVEFAPIVTV----QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY 210
           R++ V    AP +T     Q+T IG+     +++ C     P P + W KD E +V D  
Sbjct: 1   RQLTVLERVAPTITGNLENQTTSIGE----SIEVSCTASGNPPPQIMWFKDNETLVEDSG 56

Query: 211 HSISNFGTS 219
             + +   +
Sbjct: 57  IVLKDGNRN 65

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 90.0 bits (223), Expect = 1e-22
 Identities = 34/177 (19%), Positives = 55/177 (31%), Gaps = 27/177 (15%)

Query: 10  DTPPVILNNSTQLSVAKEGQSVQLECHAEGHP-IPTISWRRNFKRLGRLH--LAIP---- 62
             P V LN         +G++V L C+      + +  W  N       +  L I     
Sbjct: 3   QKPKVSLNPPWN--RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKF 60

Query: 63  -----YT--------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISW 108
                Y         S    ++     L       V  EGQ + L CH      +  + +
Sbjct: 61  EDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIY 120

Query: 109 RRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
            ++  A+    +       + I   T ED G YYC  +          + + V  AP
Sbjct: 121 YKDGEALKYWYE----NHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 90.3 bits (224), Expect = 1e-22
 Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 16/157 (10%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQT---------- 121
               +  +P       G +  L C  +     P + W R+   +     T          
Sbjct: 2   ESPFVG-NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60

Query: 122 ---IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQAL 178
                  S L+I  +   D G Y C+   G      +   V +E  P    +      A 
Sbjct: 61  QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAA 120

Query: 179 HHDMDLDCHIEAYPHPILY-WAKDGEIVVNDEYHSIS 214
           +   +L C  +  P P+   W +D   +     H   
Sbjct: 121 NTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQ 157

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 85.7 bits (212), Expect = 6e-21
 Identities = 30/196 (15%), Positives = 51/196 (26%), Gaps = 50/196 (25%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRLGRL------------- 57
               + N   ++ A  G +  L C  +     P + W R+ + L                
Sbjct: 2   ESPFVGNPGNITGA-RGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDE 60

Query: 58  --------HLAIPYTSPE----------------------AQVDTPPVILNNSPQLSVAK 87
                    L I                              ++  P  L   P+     
Sbjct: 61  QDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE-EPEDRTVA 119

Query: 88  EGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
                 L C A+G P P  + W + +   L          +L +P +      ++ C A 
Sbjct: 120 ANTPFNLSCQAQGPPEPVDLLWLQ-DAVPLATAPGHGPQRSLHVPGL--NKTSSFSCEAH 176

Query: 147 NGIGRGARRKIEVKVE 162
           N  G    R   + V 
Sbjct: 177 NAKGVTTSRTATITVL 192

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPT-ISWRRNFKRLGR 56
            ++  P  L      +VA       L C A+G P P  + W ++   L  
Sbjct: 102 GLEGLPYFLEEPEDRTVA-ANTPFNLSCQAQGPPEPVDLLWLQDAVPLAT 150

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 94.2 bits (233), Expect = 2e-22
 Identities = 31/182 (17%), Positives = 55/182 (30%), Gaps = 39/182 (21%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPE 67
                P ++    +     EG  V ++C A      T++         R  L +  T  +
Sbjct: 281 YSFPAPNVILTKPE---VSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPED 337

Query: 68  A-------------------------QVDTPPVILNNS-PQLSVAKEGQSVQLECHAEGH 101
                                     +V   P +     P      E       C A G+
Sbjct: 338 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 397

Query: 102 PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
           P+P +   ++    LP G         +   +T++  G Y C A++  G    R++ V V
Sbjct: 398 PLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCRARSTQGE-VTREVTVNV 447

Query: 162 EF 163
             
Sbjct: 448 LS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 75.7 bits (185), Expect = 4e-16
 Identities = 31/243 (12%), Positives = 60/243 (24%), Gaps = 47/243 (19%)

Query: 3   TSPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEG---HPIPTISWRRNFKRLGR--- 56
              + Q    P          V +      + C  +G        +      +RL     
Sbjct: 178 APYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT 237

Query: 57  ------LHLAIPYTSPE--------AQVDTPPVILNNSPQLSV--------------AKE 88
                    A    + E          V            +++                E
Sbjct: 238 YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE 297

Query: 89  GQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG 148
           G  V ++C A      T++            Q +   + L +    +++  ++ C A   
Sbjct: 298 GTEVTVKCEAHPRAKVTLNGVP--------AQPLGPRAQLLLKATPEDNGRSFSCSATLE 349

Query: 149 IGRGARRK---IEVKVEFAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAKDGE 203
           +      K    E++V + P +  +                 C     P P L   KDG 
Sbjct: 350 VAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT 409

Query: 204 IVV 206
             +
Sbjct: 410 FPL 412

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 68.7 bits (167), Expect = 9e-14
 Identities = 26/222 (11%), Positives = 51/222 (22%), Gaps = 43/222 (19%)

Query: 24  VAKEGQSVQLECHAEGHPIPTISWRRNFKR-------LGRLHLAIPYTSPEAQ------- 69
           +   G SV + C         +       +         R    +     ++Q       
Sbjct: 10  ILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNC 69

Query: 70  ------------VDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP--TISWRRENNA 114
                       V   P  +  +P  S    G+++ L C  EG  P    T+   R    
Sbjct: 70  PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR-GEK 128

Query: 115 ILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST 172
            L     +      T  +          + C  +  +        E       + T    
Sbjct: 129 ELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLP 188

Query: 173 RIGQALHHDMD--------LDCHIEA---YPHPILYWAKDGE 203
                L             + C ++         ++ A   +
Sbjct: 189 ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ 230

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 66.0 bits (160), Expect = 8e-13
 Identities = 32/242 (13%), Positives = 60/242 (24%), Gaps = 50/242 (20%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIP--TISWRRNFKRLGR--------- 56
           V   P  +  +   S    G+++ L C  EG  P    T+   R  K L R         
Sbjct: 82  VYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE 141

Query: 57  --LHLAI-------PYT--------------------SPEAQVDTPPVILNNSPQLSVAK 87
               + +        ++                      + Q    P          V +
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201

Query: 88  EGQSVQLECHAEG---HPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYY- 142
                 + C  +G        +     +  + P       + S      +T ED G    
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 261

Query: 143 -CVAQNGIGRG-ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK 200
            C    G       + + +    AP V +    + +    ++ + C         L    
Sbjct: 262 TCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSE--GTEVTVKCEAHPRAKVTLNGVP 319

Query: 201 DG 202
             
Sbjct: 320 AQ 321

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 59.1 bits (142), Expect = 2e-10
 Identities = 20/162 (12%), Positives = 51/162 (31%), Gaps = 16/162 (9%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITK-EDR 138
           SP   +   G SV + C         +         LP  + +  G+  ++  ++  ++ 
Sbjct: 5   SPSKVILPRGGSVLVTCSTSCDQPMLLGIETP----LPKKELLLPGNNRKVYELSNVQED 60

Query: 139 GAYYCVAQNGIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEA---YPHP 194
               C +       +  K  + V + P  V +      Q +  ++ L C +E      + 
Sbjct: 61  SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119

Query: 195 ILYWAKDGEIVVNDEYHSISNFGTS------EGTTGSLQCKV 230
            +   +  + +  +         T+      +    +  C+ 
Sbjct: 120 TVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRT 161

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 86.6 bits (215), Expect = 2e-22
 Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIP 131
           +   I    P       G ++ L+C A G PIP   W + N   L +     T     +P
Sbjct: 2   SKLQICV-EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHE----TKKLYMVP 55

Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
            +  E +G Y+C   N       +K+E+ ++
Sbjct: 56  YVDLEHQGTYWCHVYNDRDSQDSKKVEIIID 86

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLG---RLHLAIPYTSPE 67
          +   I    T   +   G ++ L+C A G PIP   W +N   L    +    +PY   E
Sbjct: 2  SKLQICVEPTSQKLM-PGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLE 60

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 91.0 bits (225), Expect = 6e-22
 Identities = 36/205 (17%), Positives = 57/205 (27%), Gaps = 43/205 (20%)

Query: 9   VDTPPVILNNSTQLSV----AKEGQSVQLECH-AEGHPIPTISWRRNFKRL--------- 54
           V   P      TQ  +     ++ + +   C  A G P   +SW    K           
Sbjct: 127 VMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186

Query: 55  -------GRLHL-----------------AIPYTSPEAQVD--TPPVILNNSPQLSVAKE 88
                   R  L                  +        ++    P +       +   +
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQ 246

Query: 89  GQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
              V+L C A+ +P  T   W   N + LP G      +      I     G Y C A N
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLNGS-LPKGVEAQNRTLFFKGPINYSLAGTYICEATN 305

Query: 148 GIGRGARRKIEVKVEFAPIVTVQST 172
            IG     ++EV +  A  +     
Sbjct: 306 PIGTR-SGQVEVNITEAAALEHHHH 329

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 80.2 bits (197), Expect = 6e-18
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 23/188 (12%)

Query: 34  ECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQ 93
            C     P              +L+L +    P   ++    +L         ++ + + 
Sbjct: 108 ICEFATFPTGNRE--------SQLNLTVM-AKPTNWIEGTQAVLRAKK----GQDDKVLV 154

Query: 94  LECH-AEGHPIPTISWRRENN------AILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
             C  A G P   +SW            I     T+   S  ++    +  + +  C+  
Sbjct: 155 ATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN 214

Query: 147 NGIGRGARRKIEVKVEFAPIVTVQSTRIGQAL-HHDMDLDCHIEAYPHPILY-WAKDGEI 204
             + R  +  + + V++ P VT++       L   D+ L C  +A P    Y W      
Sbjct: 215 YHMDR-FKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGS 273

Query: 205 VVNDEYHS 212
           +       
Sbjct: 274 LPKGVEAQ 281

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 58.2 bits (140), Expect = 3e-10
 Identities = 25/189 (13%), Positives = 47/189 (24%), Gaps = 32/189 (16%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHP----IPTISWRRENNAILPNGQTI 122
             Q+   P  +           G  V L C          I  ++W++  N    N    
Sbjct: 7   GQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIY 66

Query: 123 FTG----------------------STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160
                                     T+++ R+  ED G Y C            ++ + 
Sbjct: 67  NPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLT 126

Query: 161 VEFAPIVTVQSTRIGQALHHDMD-----LDCHI-EAYPHPILYWAKDGEIVVNDEYHSIS 214
           V   P   ++ T+         D       C      P  ++ W    +     +     
Sbjct: 127 VMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186

Query: 215 NFGTSEGTT 223
           N   +  + 
Sbjct: 187 NGTVTVISR 195

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 85.2 bits (211), Expect = 8e-22
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 2/96 (2%)

Query: 66  PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG 125
           P       P  +    +  +   G  +QL C        +I+W R+   ++ + +T  TG
Sbjct: 1   PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG 59

Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
             +++      D G Y CV  +  G        V V
Sbjct: 60  EEVEVRDSIPADSGLYACVTSSPSGS-DTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 45.6 bits (108), Expect = 5e-07
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 9/71 (12%)

Query: 5  PESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLH--- 58
          P       P  +    +  +   G  +QL C        +I+W R+  +L    R     
Sbjct: 1  PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITG 59

Query: 59 --LAIPYTSPE 67
            + +  + P 
Sbjct: 60 EEVEVRDSIPA 70

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 90.3 bits (223), Expect = 1e-21
 Identities = 39/274 (14%), Positives = 63/274 (22%), Gaps = 72/274 (26%)

Query: 24  VAKEGQSVQLECH-----------AEGHPIPTISWRRN------------FKRLGRLH-- 58
              E +  +++C                   T+ W                    R+   
Sbjct: 18  QVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE 77

Query: 59  ---LAIPYTSPE------------------------AQVDTPPVILNNSPQLSVAKEGQS 91
              L    T                            Q D+        P   +  E   
Sbjct: 78  KDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGI 137

Query: 92  VQLEC-----HAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ 146
            ++ C     +      PTI+W      I      I  G  L        + G Y CV  
Sbjct: 138 QRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVT 197

Query: 147 ---NGIGRGARRKIEVKVEFAPIVTV--------QSTRIGQALHHDMDLDCHI----EAY 191
              NG      R + VKV  +P   V              +    ++ + C +       
Sbjct: 198 YPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMD 257

Query: 192 PHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGS 225
               ++W  DG+   +       N   S   T  
Sbjct: 258 SRNEVWWTIDGKKPDDITIDVTINESISHSRTED 291

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 64.1 bits (155), Expect = 3e-12
 Identities = 23/219 (10%), Positives = 54/219 (24%), Gaps = 62/219 (28%)

Query: 5   PESQVDTPPVILNNSTQLSVAKEGQSV--QLECHAEGHPIPTISWRRNFKRLGRLH---- 58
            +      P+ L            +     ++ +      PTI+W     ++   +    
Sbjct: 115 QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP 174

Query: 59  ----LAIPYTSPE------------------------------AQVDTPPVILNNSPQLS 84
               L+                                     +  +  P ++++     
Sbjct: 175 EGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHV 234

Query: 85  V--AKEGQSVQLECHA----EGHPIPTISWRRENNAILPNGQTIF--------------T 124
           V   + G+ + + C             + W  +          +                
Sbjct: 235 VYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETR 294

Query: 125 GSTLQIPRITKEDRGA-YYCVAQNGIGRGARRKIEVKVE 162
              L I ++T ED    Y C A++  G    +  +VK +
Sbjct: 295 TQILSIKKVTSEDLKRSYVCHARSAKGE-VAKAAKVKQK 332

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 89.4 bits (221), Expect = 2e-21
 Identities = 30/194 (15%), Positives = 51/194 (26%), Gaps = 44/194 (22%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL------------ 54
           +V   P       ++ +          C +  G P   I+W  +   +            
Sbjct: 113 RVLAKPQNTAEVQKVQLT-GEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG 171

Query: 55  ------------GRLHLAIPYT---------SPEA-----QVDTPPVILNNSPQLSVAKE 88
                                T          P+       V  PP +  +    +    
Sbjct: 172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG 231

Query: 89  GQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
                L C A  +P PT  +W       LP       G+ L I  + K       C   N
Sbjct: 232 QNEATLTCDARSNPEPTGYNWST-TMGPLPPFAVA-QGAQLLIRPVDKPINTTLICNVTN 289

Query: 148 GIGRGARRKIEVKV 161
            +G   + ++ V+V
Sbjct: 290 ALGA-RQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 82.8 bits (204), Expect = 5e-19
 Identities = 24/176 (13%), Positives = 51/176 (28%), Gaps = 15/176 (8%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQ------- 120
           +V   P       ++ +          C +  G P   I+W  +   +    Q       
Sbjct: 113 RVLAKPQNTAEVQKVQLT-GEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSG 171

Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAPIVTVQ-STRIGQAL 178
           T+   S   +   ++ D     C  ++          + + V + P V++          
Sbjct: 172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG 231

Query: 179 HHDMDLDCHIEAYPHPILY-WAKDGEIVVNDEYHSISNF---GTSEGTTGSLQCKV 230
            ++  L C   + P P  Y W+     +        +        +    +L C V
Sbjct: 232 QNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNV 287

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 68.6 bits (167), Expect = 7e-14
 Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 28/167 (16%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPT-----ISWRRENNAI------------------- 115
           +P       G SV L C+ +   +       ++W R   +                    
Sbjct: 6   APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 65

Query: 116 ---LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST 172
                        ++L++  +  ED G Y C+            I ++V   P  T +  
Sbjct: 66  EFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 125

Query: 173 RIGQALHHDMDLDCH-IEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
           ++           C      P   + W  D   + N         GT
Sbjct: 126 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT 172

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 29/175 (16%)

Query: 10  DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRLGRLH--LAIPYTSP 66
           D P  ++    Q     E  SV L+C     P   +  W  N   +        I   + 
Sbjct: 4   DLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATV 63

Query: 67  E-------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTI 106
                                +V    ++L       V KE   + L CH+ +   +  +
Sbjct: 64  NDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHKV 121

Query: 107 SWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
           ++ +               S   IP+ T +D G+Y+C    G    +   + + +
Sbjct: 122 TYLQNGKDRKYFHH----NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 89.4 bits (221), Expect = 3e-21
 Identities = 36/248 (14%), Positives = 67/248 (27%), Gaps = 60/248 (24%)

Query: 23  SVAKEGQSVQLEC-------HAEGHPIPTISWRRNFKRL-------GRLH-----LAIPY 63
               EG+ V L C        A   P   ++W +N            R+      L +  
Sbjct: 28  EFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLP 87

Query: 64  TSPE-------------------AQVD---TPPVILNNSPQLSVAKEGQSVQLECH---- 97
              E                    ++         L       +     S  L C     
Sbjct: 88  ALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSE 147

Query: 98  -AEGHPIPTISWRRENNAILPNGQTIFT---GSTLQIPRITKEDRGAYYCVAQNGIGRG- 152
                    I W +++  +  + +   +    + L +  +  ED G Y CV         
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207

Query: 153 --ARRKIEVKV-----EFAPIVTVQSTRIGQALHHDMDLDCHIEA---YPHPILYWAKDG 202
               R IE+++     E  P++      I  +L   + + C +      P   + W    
Sbjct: 208 YNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTAN 267

Query: 203 EIVVNDEY 210
           +  +   Y
Sbjct: 268 DTHIESAY 275

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 88.6 bits (219), Expect = 5e-21
 Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 19/157 (12%)

Query: 81  PQLSVAKEGQSVQLEC-------HAEGHPIPTISWRRENNAILPNGQ----TIFTGSTLQ 129
            +     EG+ V L C        A   P   ++W + ++A    G+           L 
Sbjct: 25  YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALW 84

Query: 130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH-------HDM 182
           +    +ED G Y C  +N      +  IE++V       +      Q L           
Sbjct: 85  LLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCP 143

Query: 183 DLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTS 219
           DL           + W KD  ++  D    +S  GT+
Sbjct: 144 DLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT 180

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 65.9 bits (160), Expect = 6e-13
 Identities = 28/217 (12%), Positives = 50/217 (23%), Gaps = 67/217 (30%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECH-----AEGHPIPTISWRRNFKRL-----------G 55
               L   +   +     S  L C              I W ++   L           G
Sbjct: 119 TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG 178

Query: 56  RLHLAIPYTSPE-----------------------AQVDTPPVILNNSPQLSVAKEGQSV 92
             HL +   + E                        ++          P +    +  S 
Sbjct: 179 TTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISA 238

Query: 93  Q------LECHA---EGHPIPTISWRRENNAILPNG-----------------QTIFTGS 126
                  + C      G P+ T+ W   N+  + +                     +   
Sbjct: 239 SLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEV 298

Query: 127 TLQIPRITKEDRGAYY-CVAQNGIGRGARRKIEVKVE 162
            L    +T+ED    + CV  N +      +  VK  
Sbjct: 299 PLIFDPVTREDLHMDFKCVVHNTLSF-QTLRTTVKEH 334

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 89.4 bits (221), Expect = 3e-21
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 8/151 (5%)

Query: 76  ILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGSTLQIPRI 133
            L      +    G  V L C  EG  +    W                     L +  +
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANV 219

Query: 134 TKE-DRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP 192
           T + +R    C A+N +GR A   ++V V F   V + +        H   +   ++  P
Sbjct: 220 TSDLNRKNVTCWAENDVGR-AEVSVQVNVSFPASVQLHTAVE----MHHWCIPFSVDGQP 274

Query: 193 HPILYWAKDGEIVVNDEYHSISNFGTSEGTT 223
            P L W  +G ++    +        +   T
Sbjct: 275 APSLRWLFNGSVLNETSFIFTEFLEPAANET 305

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 81.3 bits (200), Expect = 2e-18
 Identities = 28/191 (14%), Positives = 45/191 (23%), Gaps = 43/191 (22%)

Query: 15  ILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHLAIP 62
            L      +    G  V L C  EG  +    W                     L L   
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL-AN 218

Query: 63  YTS-----------------PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT 105
            TS                  E  V        +    +  +      +    +G P P+
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEM-HHWCIPFSVDGQPAPS 277

Query: 106 ISWRRENNAILPNG-----------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
           + W    + +                       L++ + T  + G Y  +A N  G+ A 
Sbjct: 278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-AS 336

Query: 155 RKIEVKVEFAP 165
             I       P
Sbjct: 337 ASIMAAFMDNP 347

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 88.6 bits (219), Expect = 3e-21
 Identities = 20/186 (10%), Positives = 45/186 (24%), Gaps = 37/186 (19%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLG-----RLHLAIPYTSP 66
             +  +         E   + + C     P   ++       +                 
Sbjct: 94  GFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGIFE 152

Query: 67  EA---------------------QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT 105
           +                      ++    + ++ +   +V ++G+++ L C   G+ +  
Sbjct: 153 DRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVN 212

Query: 106 ISWRRENNAI---------LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARR 155
             W                          S L IP    ED G Y C     +      +
Sbjct: 213 FEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEK 272

Query: 156 KIEVKV 161
            I + V
Sbjct: 273 AINITV 278

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 77.4 bits (190), Expect = 3e-17
 Identities = 19/230 (8%), Positives = 45/230 (19%), Gaps = 51/230 (22%)

Query: 14  VILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLH-----------LAIP 62
           V+     +L +     +  L C         + W R  +   +             L + 
Sbjct: 2   VVTPPGPELVL-NVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLT 56

Query: 63  YTSPE---------------------------AQVDTPPVILNNSPQLSVAKEGQSVQLE 95
             +                                    +  +         E   + + 
Sbjct: 57  NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIP 116

Query: 96  CHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARR 155
           C     P   ++   +   +             Q       +  +Y C    G       
Sbjct: 117 CRVTD-PQLVVTLHEKKGDVALPVP-----YDHQRGFSGIFEDRSYICKTTIGDREVDSD 170

Query: 156 KIEVKVEFAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAKDGE 203
              V       + V    +   +    ++ L C +         W    +
Sbjct: 171 AYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRK 220

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 69.3 bits (169), Expect = 3e-14
 Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 15/165 (9%)

Query: 75  VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG---STLQIP 131
           V+    P+L +     +  L C         + W R +            G   S L + 
Sbjct: 2   VVTPPGPELVL-NVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLT 56

Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP------IVTVQSTRIGQALHHDMDLD 185
            +T  D G Y+C   +  G     +  + +              +   I      ++ + 
Sbjct: 57  NLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIP 116

Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
           C +      +    K G++ +   Y     F +      S  CK 
Sbjct: 117 CRVTDPQLVVTLHEKKGDVALPVPYDHQRGF-SGIFEDRSYICKT 160

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 83.6 bits (207), Expect = 3e-21
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 3/80 (3%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGSTLQI 130
           PP+IL   P         +  L+C A G P+P ISW +E           TI    TLQI
Sbjct: 8   PPIILQ-GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQI 66

Query: 131 PRITKEDRGAYYCVAQNGIG 150
             +   D G Y CVA +  G
Sbjct: 67  KNLRISDTGTYTCVATSSSG 86

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 85.9 bits (212), Expect = 5e-21
 Identities = 29/176 (16%), Positives = 54/176 (30%), Gaps = 39/176 (22%)

Query: 23  SVAKEGQSVQLECHAEGHPIPTIS--WRRNFKRL-------GRLHLAI------------ 61
           +V   G  + L C             W +    L        +    +            
Sbjct: 8   TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCV 67

Query: 62  ----PYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENN--- 113
               P  +   Q+  PP +           EG++  L C +E  P +   +W +  +   
Sbjct: 68  FLPEPMGTANIQLHGPPRVK-AVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSED 126

Query: 114 -AILPNGQTIFT------GSTLQIPRIT-KEDRGAYYCVAQNGIGRGARRKIEVKV 161
            A++   ++ F        S L I  +  + D G Y C   +  G   +  I ++V
Sbjct: 127 KALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 77.8 bits (191), Expect = 4e-18
 Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 10/123 (8%)

Query: 84  SVAKEGQSVQLECHAEGHPIPTIS--WRRENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
           +V   G  + L C             W +    +L        G   +    + +  G Y
Sbjct: 8   TVEDLGSKILLTCSLNDSATEVTGHRWLK-GGVVLKEDAL--PGQKTEFKVDSDDQWGEY 64

Query: 142 YCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY-WAK 200
            CV        A  ++        + + +    G+       L C  E+ P    + W K
Sbjct: 65  SCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGE----TAMLVCKSESVPPVTDWAWYK 120

Query: 201 DGE 203
             +
Sbjct: 121 ITD 123

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 83.7 bits (207), Expect = 5e-21
 Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTGSTLQI 130
           PPVI    P         +  L C A G P+PTI WR++   +              LQI
Sbjct: 8   PPVIRQG-PVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQI 66

Query: 131 PRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAPIVTVQST 172
                 D G Y C+A    G       IEV+    P+   + T
Sbjct: 67  RYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPT 109

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 82.8 bits (205), Expect = 8e-21
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGA 140
            +  +   G  +QL C        +I+W R+   +  + +T  TG  +++      D G 
Sbjct: 10  VESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGL 68

Query: 141 YYCVAQNGIGRGARRKIEVKVEFAP 165
           Y CV  +  G        V V  A 
Sbjct: 69  YACVTSSPSGS-DTTYFSVNVSDAL 92

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 82.4 bits (204), Expect = 1e-20
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 68  AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG----QTIF 123
           ++      IL   P+     EG+S +  C  +G P+PT++W R+   +  +      T  
Sbjct: 9   SKTTLAARILT-KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK 67

Query: 124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
             ST +I  +   D G Y  V +N  G+    +  + ++
Sbjct: 68  YKSTFEISSVQASDEGNYSVVVENSEGK-QEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 12/73 (16%)

Query: 159 VKVEFAPIVTV----QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
            K   A  +       +   G++        C  +  P P + W + G+++     H + 
Sbjct: 9   SKTTLAARILTKPRSMTVYEGESAR----FSCDTDGEPVPTVTWLRKGQVLSTSARHQV- 63

Query: 215 NFGTSEGTTGSLQ 227
              T+     + +
Sbjct: 64  ---TTTKYKSTFE 73

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 86.6 bits (214), Expect = 2e-20
 Identities = 28/273 (10%), Positives = 65/273 (23%), Gaps = 71/273 (26%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHL 59
            P        +       S+  EC  +  P    SW +++                +  +
Sbjct: 3   DPFTKEVVVNVDD-DGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKM 60

Query: 60  AIPYTSPE---------------------------------AQVDTPPVILNNSPQLSVA 86
                  +                                  +   P V + +   + + 
Sbjct: 61  TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120

Query: 87  KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS------TLQIPRITKEDRGA 140
           ++GQ        +      +++      I    +             + + ++  ED G 
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGT 180

Query: 141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH-----------------HDMD 183
           Y    Q+G        + V   F  +      +  + +                   ++ 
Sbjct: 181 YTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVL 240

Query: 184 LDCHIEAY-PHPILYWAKDGEIVVNDEYHSISN 215
           L C +        + W KD   +  DE H   +
Sbjct: 241 LKCKVANIKKETHIVWYKDEREISVDEKHDFKD 273

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 79.3 bits (195), Expect = 1e-17
 Identities = 30/206 (14%), Positives = 62/206 (30%), Gaps = 56/206 (27%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRL 57
           P V + +   + + ++GQ        +      +++  N K +              G +
Sbjct: 107 PTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII 166

Query: 58  HLAIP---------YT------------------------SPEAQVDTPPVILNNSPQLS 84
            + +          YT                          EA+      I    P   
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 226

Query: 85  -----VAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTG--STLQIPRITKE 136
                      +V L+C        T I W ++   I  + +  F     TL I   +K+
Sbjct: 227 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKK 286

Query: 137 DRGAYYCVAQNGIGRGARRKIEVKVE 162
           D G Y  + ++  G+  + ++++  E
Sbjct: 287 DAGIYEVILKDDRGK-DKSRLKLVDE 311

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 84.1 bits (207), Expect = 3e-20
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 5/146 (3%)

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYC 143
           +A+ G SV L C   G   P  SWR + ++ L        T STL +  ++  +  +Y C
Sbjct: 12  LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLC 71

Query: 144 VAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIE-AYPHPIL--YWAK 200
            A     +   + I+V++   P                + + C +   YP   L     K
Sbjct: 72  TATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLK 130

Query: 201 DGEIVVNDEYHSISNFGTSEGTTGSL 226
              ++ + E+   ++  + E  +  +
Sbjct: 131 GDHLMKSQEFLEDADRKSLETKSLEV 156

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 72.1 bits (176), Expect = 1e-15
 Identities = 29/192 (15%), Positives = 54/192 (28%), Gaps = 48/192 (25%)

Query: 24  VAKEGQSVQLECHAEGHPIPTISWRRN---------FKRLGRLHLAIPYTSPEA------ 68
           +A+ G SV L C   G   P  SWR                   L +   S         
Sbjct: 12  LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLC 71

Query: 69  ---------------QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH---PIPTISWRR 110
                          ++ + P          + + G+ + ++C            I   +
Sbjct: 72  TATCESRKLEKGIQVEIYSFPKDPEIHLSGPL-EAGKPITVKCSVADVYPFDRLEIDLLK 130

Query: 111 ENNAI-------LPNGQTIFTGSTLQIPRITKEDRGAYY-CVAQNGIGRGA------RRK 156
            ++ +         + +++ T S         ED G    C A+  I          +  
Sbjct: 131 GDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAV 190

Query: 157 IEVKVEFAPIVT 168
            E++V  +P  T
Sbjct: 191 KELQVYISPKNT 202

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 80.8 bits (200), Expect = 4e-20
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 64  TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF 123
           +S  + ++  P   +   +     EGQ   L+C   G P+P I+W      I     T  
Sbjct: 2   SSGSSGMEVAPSFSSV-LKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE 60

Query: 124 TG-STLQIPRITKEDRGAYYCVAQNGIGR 151
            G + L I     ED G Y C+A+N +G+
Sbjct: 61  AGVAELHIQDALPEDHGTYTCLAENALGQ 89

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 8/65 (12%)

Query: 158 EVKVEFAPIVTV----QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSI 213
              +E AP  +      +   GQ       L C +   P P + W  +G+ +        
Sbjct: 5   SSGMEVAPSFSSVLKDCAVIEGQDFV----LQCSVRGTPVPRITWLLNGQPIQYARSTCE 60

Query: 214 SNFGT 218
           +    
Sbjct: 61  AGVAE 65

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 78.9 bits (195), Expect = 2e-19
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTL 128
            P IL  + +    K G +  LE    G P PT +W   ++      + +       +++
Sbjct: 2   KPKILT-ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
             P   + D G Y    +N +G       EV V+
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 78.2 bits (193), Expect = 4e-19
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 65  SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT 124
           S  +       ++   P+      G +V L C     P P I W ++   +      +  
Sbjct: 2   SSGSSGLEEVQLVVE-PEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL-----PLPP 55

Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKV 161
              L +P I  +D+G Y CVA +        R + + +
Sbjct: 56  SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISI 93

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 4  SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---GRLHLA 60
          S  S       ++      +VA  G +V L C     P P I W ++   L       L 
Sbjct: 2  SSGSSGLEEVQLVVEPEGGAVA-PGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLI 60

Query: 61 IPYTSPE 67
          +P   P+
Sbjct: 61 LPEIGPQ 67

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 81.1 bits (200), Expect = 5e-19
 Identities = 31/187 (16%), Positives = 60/187 (32%), Gaps = 30/187 (16%)

Query: 10  DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRLGRLH--LAIPYTSP 66
           D P  ++    Q     E  SV L+C     P   +  W  N   +        I   + 
Sbjct: 4   DLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATV 63

Query: 67  EA-------------------QVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTI 106
           +                    +V    ++L       V KE   + L CH+     +  +
Sbjct: 64  DDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHKV 121

Query: 107 SWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV-EFAP 165
           ++ +               S   IP+ T +D G+Y+C    G    +   +++ + +   
Sbjct: 122 TYLQNGKGRKYFHH----NSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177

Query: 166 IVTVQST 172
           + T+ S 
Sbjct: 178 VSTISSF 184

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 80.5 bits (198), Expect = 9e-19
 Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 54/199 (27%)

Query: 25  AKEGQSVQLECHAEGHPIPTISWRR-----------------NFKRLGRLH--------- 58
             E  +V L  H     +   +W +                 N    G+ +         
Sbjct: 11  VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70

Query: 59  --LAIPYTSPE----------------------AQVDTPPVILNNSPQLSVAKEGQSVQL 94
             L     + +                        V  P          +  KE  SV L
Sbjct: 71  GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTL 130

Query: 95  ECHAEGHPIPTISWRRENNAILPNGQTIFT--GSTLQIPRITKEDRGAYYCVAQNGIGRG 152
            C +       I W   + ++    +   +   S L+I  I +ED G Y C   N +   
Sbjct: 131 TCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR 189

Query: 153 ARRKIEVKVEFAP-IVTVQ 170
               I++ + F P      
Sbjct: 190 RSNSIKLDIIFDPHHHHHH 208

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 67.8 bits (165), Expect = 4e-14
 Identities = 22/173 (12%), Positives = 44/173 (25%), Gaps = 29/173 (16%)

Query: 86  AKEGQSVQLECHAEGHPIPTISWRRENNAILP--------------------NGQTIFTG 125
             E  +V L  H     +   +W + N   +                       + I++ 
Sbjct: 11  VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN 70

Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLD 185
            +L    IT +D G Y     +   R  +  +   V                   D  + 
Sbjct: 71  GSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELD-SVT 129

Query: 186 CHIEAYPHPILY-WAKDGEIVVNDEYHSISN-------FGTSEGTTGSLQCKV 230
               +        W  + + +   E  ++S                G  QC++
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEI 182

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 78.1 bits (192), Expect = 1e-18
 Identities = 28/110 (25%), Positives = 38/110 (34%), Gaps = 19/110 (17%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG--- 125
           +       +  +P       G SV+L C A G P+P I W  E          ++ G   
Sbjct: 17  RGSHMAGFVQ-APLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75

Query: 126 --------------STLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVK 160
                         ST+ I  + +ED G Y C A N   R    R   VK
Sbjct: 76  DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 79.7 bits (196), Expect = 1e-18
 Identities = 18/147 (12%), Positives = 33/147 (22%), Gaps = 26/147 (17%)

Query: 30  SVQLECHAEGHPIPTISWRRNFKRLGRLHL---------------AIPYTSPEAQVD--- 71
            +  +      P               L +                +  T    Q     
Sbjct: 42  RMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV 101

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI----LPNGQ-TIFTGS 126
             P+ L+   + S   +   + + C     P P + W             NG        
Sbjct: 102 VKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDG 161

Query: 127 TLQI---PRITKEDRGAYYCVAQNGIG 150
           +L +     + K       CV +N   
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKE 188

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 70.1 bits (171), Expect = 5e-15
 Identities = 31/210 (14%), Positives = 53/210 (25%), Gaps = 47/210 (22%)

Query: 24  VAKEGQSVQLECHAE---GHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNS 80
            A  G+ V L  +       P   +SW +                               
Sbjct: 2   TAFLGERVTLTSYWRRVSLGPEIEVSWFKL-----------------------------G 32

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGA 140
           P       G  +  +      P         +               L +        G 
Sbjct: 33  PGEEQVLIG-RMHHDVIFIEWPFRGFFDIHRSA----------NTFFLVVTAANISHDGN 81

Query: 141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK 200
           Y C  + G      ++  + V     ++V S R        + + C + A+PHP + W  
Sbjct: 82  YLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLM 140

Query: 201 DGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
              +         +N G  +   GSL   V
Sbjct: 141 PEGVEPAPTA---ANGGVMKEKDGSLSVAV 167

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 79.9 bits (197), Expect = 2e-18
 Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 30/174 (17%)

Query: 80  SPQLSVAKEGQSVQLECH-AEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRIT 134
           +  L +    + +QL            ++W    +AI  + +           LQI   T
Sbjct: 8   ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPT 67

Query: 135 KEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMD----------- 183
             D+G Y     +G     ++ +++  +       +  R+ QA   + +           
Sbjct: 68  PNDKGKYVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV 126

Query: 184 ----------LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
                     L C++   P P + W K+ + +   ++ ++       G T    
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF---EAGRTAYFT 177

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 78.4 bits (193), Expect = 5e-18
 Identities = 31/204 (15%), Positives = 57/204 (27%), Gaps = 62/204 (30%)

Query: 19  STQLSVAKEGQSVQLECH-AEGHPIPTISWRRNFKRL------------GRLHLAIPYTS 65
           +T L +    + +QL            ++W  N   +             ++ L I   +
Sbjct: 8   ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPT 67

Query: 66  PE------------------------------------------AQVDTPPVILNNSPQL 83
           P                                           A+ +   V+    P +
Sbjct: 68  PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG-LPDV 126

Query: 84  SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDR 138
              +EG+++ L C+  G P P +SW +   A+               +   I  ++  D 
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186

Query: 139 GAYYCVAQNGIGRGARRKIEVKVE 162
           G Y  V +N  G        V V 
Sbjct: 187 GKYGLVVKNKYGS-ETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 44.9 bits (106), Expect = 5e-06
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 4   SPESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN 50
           +  ++ +   V+      +++ +EG+++ L C+  G P P +SW +N
Sbjct: 109 AAIAEKNRARVLGGLPDVVTI-QEGKALNLTCNVWGDPPPEVSWLKN 154

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 77.2 bits (190), Expect = 2e-18
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 15/115 (13%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTG-- 125
            V+ PP+I  +S Q   A  G+  Q++C     P P  I+W  + N +       +T   
Sbjct: 10  TVNGPPII--SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 67

Query: 126 --------STLQIPRITKEDRGAYY-CVAQNGIGRGARRKIEVKVEFAPIVTVQS 171
                   STL I  I + D    Y C A N  G      I +K + + +    S
Sbjct: 68  ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQGSEMSGPSS 121

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 46.8 bits (111), Expect = 4e-07
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 8  QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRL 54
           V+ PP+I +  TQ   A  G+  Q++C     P P  I+W      L
Sbjct: 10 TVNGPPIISSTQTQ--HALHGEKGQIKCFIRSTPPPDRIAWSWKENVL 55

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 76.6 bits (189), Expect = 2e-18
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----G 125
           + + PVI+    Q +        +    A G P PT  W ++  AI   G+   +    G
Sbjct: 3   ISSKPVIVTG-LQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61

Query: 126 STLQIPRITKEDRGAYYCVAQNGIG 150
             L+I +    D G Y C  +N  G
Sbjct: 62  FFLEIHKTDTSDSGLYTCTVKNSAG 86

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 76.7 bits (189), Expect = 2e-18
 Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 8/111 (7%)

Query: 65  SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT 124
               +    P+ +   PQ     EG SV+LEC     P P + W+R N  +  N   I  
Sbjct: 7   HHSHEHKRAPMFIYK-PQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISL 65

Query: 125 ------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTV 169
                   TL I  + K+D G Y   A N  G        + V   P  T+
Sbjct: 66  YQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVTARPNQTL 115

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 75.6 bits (186), Expect = 4e-18
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 72  TPPVILN---NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-----QTIF 123
             P   N      +L       +V+  C A G+P+PT+ W +              +   
Sbjct: 3   RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 62

Query: 124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
              +L +  +   D+G Y CV +N  G        + V
Sbjct: 63  QHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDV 99

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 77.6 bits (191), Expect = 5e-18
 Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 29/165 (17%)

Query: 85  VAKEGQSVQLECH--AEGHPIPTISWRRENN----AILPNGQTIFTGS---------TLQ 129
               GQ + L+         I  I W + ++    A     +  F            TL+
Sbjct: 10  WGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLK 69

Query: 130 IPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFA---PIVTVQSTRIGQALHHDMDLD 185
           I  +  +D+  Y     +  G+    +  ++K++     P ++               L 
Sbjct: 70  IKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINT--------TLT 121

Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
           C +     P L   +DG+ +   +      + TS   +   +C  
Sbjct: 122 CEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSL--SAKFKCTA 164

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 75.4 bits (186), Expect = 6e-18
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 71  DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GS 126
            + P I+   P+    + G+SV+L     G    T +W +    I  +          GS
Sbjct: 5   SSGPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS 63

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
            L I    +E  G Y  + +N +G   + ++ + V   P
Sbjct: 64  KLTILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVDKP 101

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 75.0 bits (185), Expect = 6e-18
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS----- 126
            PP     S      +EGQ V +    +G P P +SW R    + P+ +     +     
Sbjct: 4   APPTFKV-SLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC 62

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
            L+I    + D G Y C A N  G   + +  ++V 
Sbjct: 63  RLRILAAERGDAGFYTCKAVNEYGA-RQCEARLEVR 97

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 75.5 bits (186), Expect = 7e-18
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 70  VDTPPVIL--NNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--- 124
           +  PP I    +  Q  + K G+ + L    +G P P + W +    +  +   + T   
Sbjct: 18  IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF 77

Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
            +   + +  + D G Y    Q    +     I ++V
Sbjct: 78  DTVFFVRQAARSDSGEYELSVQIENMK-DTATIRIRV 113

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 75.1 bits (185), Expect = 9e-18
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 7/101 (6%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----- 124
               P  L  +P     +EG+  +++C   G P P +SW+ +   + P+           
Sbjct: 6   SGFRPHFLQ-APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64

Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
             +L I  +T  D G Y C+A N  G+     +E+ V    
Sbjct: 65  VHSLIIEPVTSRDAGIYTCIATNRAGQ-NSFSLELVVAAKE 104

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 77.6 bits (191), Expect = 1e-17
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 15/124 (12%)

Query: 63  YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI 122
              P       P +    P      EG  V + C    +P  TISW R+   +  +  + 
Sbjct: 9   ALVPRGSHMYAPKL--QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN 66

Query: 123 FT------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP------IVTVQ 170
                    S L++   ++ D G Y C A N IG+    +  +     P       V   
Sbjct: 67  IKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQADTPSSPSIDQVEPY 125

Query: 171 STRI 174
           S+  
Sbjct: 126 SSTA 129

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 14/88 (15%)

Query: 139 GAYYCVAQNGIGRGARRKIEVKVEFAPIVTV---QSTRIGQALHHDMDLDCHIEAYPHPI 195
             Y   +   + R           +AP +       T  G  ++    + C + AYP   
Sbjct: 1   ATYAAASSALVPR-------GSHMYAPKLQGPVAVYTWEGNQVN----ITCEVFAYPSAT 49

Query: 196 LYWAKDGEIVVNDEYHSISNFGTSEGTT 223
           + W +DG+++ +  Y +I  + T   + 
Sbjct: 50  ISWFRDGQLLPSSNYSNIKIYNTPSASY 77

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 79.0 bits (194), Expect = 1e-17
 Identities = 30/217 (13%), Positives = 59/217 (27%), Gaps = 65/217 (29%)

Query: 9   VDTPPVILNNSTQLS--VAKEGQSVQLECH------AEGHPIPTISWRRNFKRL------ 54
           V+  P +  N+  +            L C        E + +P + W ++ K L      
Sbjct: 97  VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH 156

Query: 55  ---GRLHLAIPYTSPE------------------------------AQVDTPPVILNNSP 81
               +  L +   + +                                  T PVI++ + 
Sbjct: 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN 216

Query: 82  QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG---------------- 125
           +      G  +QL C+  G       W+   + I  +   +                   
Sbjct: 217 ETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLI 276

Query: 126 STLQIPRITKED-RGAYYCVAQNGIGRGARRKIEVKV 161
           + L I  I     +  + C A+N  G      I++  
Sbjct: 277 TVLNISEIESRFYKHPFTCFAKNTHGI-DAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 72.1 bits (176), Expect = 4e-15
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 16/153 (10%)

Query: 81  PQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILPNGQ----TIFTGSTLQIPRITK 135
             + V+   +     C    +    TI+W ++++    + +           L       
Sbjct: 12  KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 71

Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKV--------EFAPIVTVQSTRIGQ--ALHHDMDLD 185
           ED G YYCV +N      R KI  K           A  +  Q   +     L       
Sbjct: 72  EDSGHYYCVVRNSSYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF 130

Query: 186 CHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT 218
              E    P L W KD + ++ D  H       
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR 163

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 79.0 bits (195), Expect = 3e-17
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ----TIFTGSTL 128
              I +   Q     EG +VQ  C A+G P P I W      ++        T+F   TL
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
           ++     +D G Y C+A N  G        + V
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHV 475

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 72.7 bits (179), Expect = 5e-17
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS-- 126
            +D  P I     +      GQ+ +   + +  P   + W      +  + +  +T +  
Sbjct: 4   TLDHAPRITLR-MRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62

Query: 127 --TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
             TL+I     +D G Y  V  N  G  A     + V 
Sbjct: 63  VLTLEILDCHTDDSGTYRAVCTNYKGE-ASDYATLDVT 99

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 72.7 bits (179), Expect = 6e-17
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GST 127
           PP  +   P+     EG+  +++    G P P +SW      +  +             +
Sbjct: 5   PPRFIQ-VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63

Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
           L    +   D GAY CVA+N  G  A   +++ V 
Sbjct: 64  LIFEVVRASDAGAYACVAKNRAGE-ATFTVQLDVL 97

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
           +D  +   P P + W  +G  V +D+ H +     SE    SL 
Sbjct: 25  MDFKVSGLPAPDVSWYLNGRTVQSDDLHKMI---VSEKGLHSLI 65

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 72.5 bits (178), Expect = 6e-17
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----- 124
           V   P I      L          +    +G+P P + W      +  +           
Sbjct: 1   VHFAPTIT----FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56

Query: 125 ----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
                  LQ+   T  + G Y  +A+N  G+   ++I       P
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWP 100

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 161 VEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE 220
           V FAP +T           H   +   ++  P P L W  +G I+   +Y       T+ 
Sbjct: 1   VHFAPTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 221 -GTTGSLQ 227
               G LQ
Sbjct: 58  TEYHGCLQ 65

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 75.4 bits (185), Expect = 6e-17
 Identities = 27/196 (13%), Positives = 57/196 (29%), Gaps = 56/196 (28%)

Query: 22  LSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------GRLHLAIP----- 62
           + + ++GQ        +      +++  N K +              G + + +      
Sbjct: 12  VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 71

Query: 63  ----YT------------------------SPEAQVDTPPVILNNSPQLSV-----AKEG 89
               YT                          EA+      I    P             
Sbjct: 72  DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGE 131

Query: 90  QSVQLECHAEGH-PIPTISWRRENNAILPNGQTIFTG--STLQIPRITKEDRGAYYCVAQ 146
            +V L+C          I W ++   I  + +  F     TL I   +K+D G Y  + +
Sbjct: 132 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 191

Query: 147 NGIGRGARRKIEVKVE 162
           +  G+  + ++++  E
Sbjct: 192 DDRGK-DKSRLKLVDE 206

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 69.6 bits (170), Expect = 8e-15
 Identities = 22/157 (14%), Positives = 48/157 (30%), Gaps = 24/157 (15%)

Query: 83  LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS------TLQIPRITKE 136
           + + ++GQ        +      +++      I    +             + + ++  E
Sbjct: 12  VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 71

Query: 137 DRGAYYCVAQNGIGR---------GARRKIEVKVEF--APIVTVQSTRIGQALH------ 179
           D G Y    Q+G               +K++ + EF     +  Q     + L       
Sbjct: 72  DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGE 131

Query: 180 HDMDLDCHIEAY-PHPILYWAKDGEIVVNDEYHSISN 215
            ++ L C +        + W KD   +  DE H   +
Sbjct: 132 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD 168

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 74.7 bits (183), Expect = 1e-16
 Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNGQTIF--TG 125
            V   P            + G   +L+C   EG       W++ +++       +   T 
Sbjct: 117 TVLVKPSGTR-CFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTS 175

Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
             + +   + E  G Y C  QN +G   +  + + V
Sbjct: 176 PVISVKNASSEYSGTYSCTVQNRVG-SDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 67.0 bits (163), Expect = 8e-14
 Identities = 29/191 (15%), Positives = 50/191 (26%), Gaps = 41/191 (21%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPT----ISWRRENNAILPNGQTIFT----------- 124
             Q     +G++  L C     P       I W    +      Q I             
Sbjct: 6   PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYY 65

Query: 125 -----------------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIV 167
                             +++ +  +   D G Y C  +   G  A +K  + V   P  
Sbjct: 66  PDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSG 124

Query: 168 TVQSTRIGQALHHDMDLDCH-IEAYPHPILYWAKDGE-IVVNDEYHSISNFGT------S 219
           T       + + +D  L C   E        W K  +   +   + +            S
Sbjct: 125 TRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNAS 184

Query: 220 EGTTGSLQCKV 230
              +G+  C V
Sbjct: 185 SEYSGTYSCTV 195

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 9/44 (20%), Positives = 14/44 (31%), Gaps = 2/44 (4%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRN 50
            V   P         S  + G   +L+C   EG       W++ 
Sbjct: 117 TVLVKPSGTRCFVDGSE-EIGNDFKLKCEPKEGSLPLQFEWQKL 159

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 72.0 bits (177), Expect = 1e-16
 Identities = 23/85 (27%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTGS---- 126
            P       +     EG  V   C   G+P P I W ++   I P     TI        
Sbjct: 8   APFFEM-KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC 66

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGR 151
           +L     T +D G Y  +A N  GR
Sbjct: 67  SLHTTASTLDDDGNYTIMAANPQGR 91

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 72.0 bits (176), Expect = 9e-16
 Identities = 24/170 (14%), Positives = 44/170 (25%), Gaps = 42/170 (24%)

Query: 24  VAKEGQSVQLECHAEGHPIPTISWRRNFKRL---------------------GRLHLAIP 62
               G SV LEC  +      +   R   +                      G+    IP
Sbjct: 13  TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72

Query: 63  -------------------YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI 103
                              +      V      +    ++        VQL C A G+P+
Sbjct: 73  SVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL 132

Query: 104 PTISWRRENNAILPNGQTIFTG--STLQIPRITKEDRGAYYCVAQNGIGR 151
             +SW+  +     +      G      + R+  +    + C+  N   +
Sbjct: 133 AEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMK 182

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 70.1 bits (171), Expect = 5e-15
 Identities = 26/166 (15%), Positives = 46/166 (27%), Gaps = 22/166 (13%)

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG-------------STLQIP 131
               G SV LEC  +      +   R +   + N  ++ +              +   IP
Sbjct: 13  TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72

Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY 191
            +   D G Y C+   G      + + VKV+ + +              ++ L C    Y
Sbjct: 73  SVQVRDSGQYRCLVICGAAWD-YKYLTVKVKASYMRIDTRILEVPG-TGEVQLTCQARGY 130

Query: 192 PHPILYWAKDGEIVVNDE-------YHSISNFGTSEGTTGSLQCKV 230
           P   + W                  Y   S        + +  C  
Sbjct: 131 PLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMF 176

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN 50
            V      +   T++        VQL C A G+P+  +SW+  
Sbjct: 98  TVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNV 140

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 70.7 bits (173), Expect = 1e-15
 Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 65  SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT 124
             E +    P             EG + + +C  EG+P P + W +++N +  +      
Sbjct: 33  VAEEKPHVKPYFTKT-ILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQID 91

Query: 125 -----GSTLQIPRITKEDRGAYYCVAQNGIGR 151
                  +L I  +  +D   Y C A N +G 
Sbjct: 92  YDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 43.3 bits (102), Expect = 9e-06
 Identities = 18/92 (19%), Positives = 24/92 (26%), Gaps = 11/92 (11%)

Query: 130 IPRITKEDRGAYYCVAQNGIGRGA---RRKIEVKVEFAPIVTV----QSTRIGQALHHDM 182
           +             +  N +           E K    P  T          G A     
Sbjct: 4   MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAAR--- 60

Query: 183 DLDCHIEAYPHPILYWAKDGEIVVNDEYHSIS 214
             DC +E YP P + W KD   V    +  I 
Sbjct: 61  -FDCKVEGYPDPEVMWFKDDNPVKESRHFQID 91

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 6/83 (7%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GST 127
            P I     Q     +G          G P P   W +    I  + +  +         
Sbjct: 5   APKIFER-IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63

Query: 128 LQIPRITKEDRGAYYCVAQNGIG 150
           L I  +T ED  +    A N  G
Sbjct: 64  LVIRDVTGEDSASIMVKAINIAG 86

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 42.6 bits (101), Expect = 7e-06
 Identities = 12/69 (17%), Positives = 17/69 (24%), Gaps = 14/69 (20%)

Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN-------------FKRLGRLH 58
           P I       +V  +G          G P P   W +N             +       
Sbjct: 5  APKIFERIQSQTVG-QGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63

Query: 59 LAIPYTSPE 67
          L I   + E
Sbjct: 64 LVIRDVTGE 72

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 67.5 bits (165), Expect = 7e-15
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 13/105 (12%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN--------GQ 120
            V  PP ++     L   +      +E    G+P PT+ W      +  +         +
Sbjct: 4   TVYYPPRVV----SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59

Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
              +   L   + T  + G Y  +A+N +G  A + I       P
Sbjct: 60  GEISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEP 103

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 46.0 bits (109), Expect = 7e-07
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 157 IEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNF 216
           + + V + P V    +     L  +  ++  +   P P L+W  +G+ +   +   +  +
Sbjct: 1   VALTVYYPPRVV---SLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57

Query: 217 GTSEGTTGSLQ 227
              E + G L 
Sbjct: 58  QEGEISEGCLL 68

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 66.6 bits (163), Expect = 8e-15
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 85  VAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNG--QTIFTG--STLQIPRITKEDRG 139
           V +EG  V+  C  E +   T ++W      +  +   +  +    + L +  ITK D G
Sbjct: 12  VGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDG 71

Query: 140 AYYCVAQNGIGRGARRKIEVKVE 162
            Y C   N  G       E+ V+
Sbjct: 72  TYRCKVVNDYGE-DSSYAELFVK 93

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 68.4 bits (167), Expect = 1e-14
 Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 19/164 (11%)

Query: 80  SPQLSVAKEGQSVQLECH--AEGHPIPTISWRRENNAIL----------PNG-QTIFTGS 126
                    G  + L          I  + W R +  +            +G   I    
Sbjct: 2   DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG 61

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDC 186
            L+I  +T++D G Y     +  G     K  + +    +V+            +  L C
Sbjct: 62  DLKIKNLTRDDSGTYNVTVYSTNGTRILNK-ALDLRILEMVSKPMIYWE---CSNATLTC 117

Query: 187 HIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
            +       L   +  E + +    ++S   T+       +CK 
Sbjct: 118 EVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNL--RAPFKCKA 159

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 13/166 (7%), Positives = 33/166 (19%), Gaps = 45/166 (27%)

Query: 24  VAKEGQSVQLECH--AEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPP------- 74
               G  + L          I  + W R    +      +         +          
Sbjct: 7   WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 66

Query: 75  -----------VILNNS------------------PQLSVAKEGQSVQLECHAEGHPIPT 105
                      V + ++                   +  +  E  +  L C         
Sbjct: 67  NLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVE 126

Query: 106 ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151
           +   +         + + +     +       R  + C A N + +
Sbjct: 127 LKLYQ-------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ 165

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 66.3 bits (161), Expect = 2e-14
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 16/113 (14%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA--------------ILPN 118
             V+L+ S  + +   G+ + L C A       I +  E  +                  
Sbjct: 8   YDVVLSPSHGIEL-SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66

Query: 119 GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS 171
            +     STL I  +T+ D+G Y C A +G+    +    V+V   P V   S
Sbjct: 67  SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAFGS 118

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 2e-14
 Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 78  NNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT---IFTGSTLQIPRIT 134
                   A  G ++ + C  +   +  +     N  +L  G           L   ++ 
Sbjct: 250 EYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQ 309

Query: 135 KEDRGAYYCVAQNGIGRGARRKIEVKV 161
            ED G Y C A           +E+KV
Sbjct: 310 VEDGGVYTCYAMGETFN-ETLSVELKV 335

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 4e-14
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 8/102 (7%)

Query: 65  SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---- 120
                    PVI+     L+V  EG + +L+C A    + ++SW   N  ++ +G     
Sbjct: 333 DQNYFTCYAPVIVEPPADLNVT-EGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVR 390

Query: 121 -TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
             + +  TL    +T +D G Y C+  N +G        + V
Sbjct: 391 IAVLSDGTLNFTNVTVQDTGMYTCMVSNSVGN-TTASATLNV 431

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 67.5 bits (164), Expect = 5e-14
 Identities = 28/205 (13%), Positives = 54/205 (26%), Gaps = 52/205 (25%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------GRLHL 59
             V   +        + ++V + C         +S    +                +   
Sbjct: 8   ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66

Query: 60  AIPYTSP--------EAQVD----------------TPPVILNNSPQLSVAKEGQSVQLE 95
            IP            EA+++                    ++ +         G+ + L 
Sbjct: 67  TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126

Query: 96  CHAEGHPIPTISWR--------------RENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
           C A       I +                 +       +     STL I  +T+ D+G Y
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 186

Query: 142 YCVAQNGIGRGARRKIEVKVEFAPI 166
            C A +G+    +    V+V   PI
Sbjct: 187 TCAASSGLMT-KKNSTFVRVHEDPI 210

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 59.8 bits (144), Expect = 4e-11
 Identities = 21/144 (14%), Positives = 38/144 (26%), Gaps = 10/144 (6%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA--ILPNGQTIF--TGSTL 128
             V   +        + ++V + C         +S          +P+G  I   +    
Sbjct: 8   ASVSDQHGVVYITENKNKTVVIPCLG-SISNLNVSLCARYPEKRFVPDGNRISWDSKKGF 66

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ---STRIGQALHHDMDLD 185
            IP       G  +C A+            V V    I  V    S  I  ++   + L+
Sbjct: 67  TIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN 126

Query: 186 CHIEAYPHP--ILYWAKDGEIVVN 207
           C      +      W        +
Sbjct: 127 CTARTELNVGIDFNWEYPSSKHQH 150

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 9/102 (8%)

Query: 65  SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---- 120
              +   + P I++    L+++ EG+  +L+C     P+ ++ W   N  +L +      
Sbjct: 344 DQASFQCSAPFIMDAPRDLNIS-EGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPR 400

Query: 121 -TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
            ++    TL    +   D G Y C+  N  G  +     + V
Sbjct: 401 ISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNV 441

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 65.7 bits (159), Expect = 3e-13
 Identities = 11/114 (9%), Positives = 23/114 (20%), Gaps = 26/114 (22%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-------- 124
              +  ++ ++    EG  + + C         ++W              +         
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194

Query: 125 -----------------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
                               L I      D G  +C    G G          +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE-LDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 64.2 bits (155), Expect = 2e-12
 Identities = 26/207 (12%), Positives = 47/207 (22%), Gaps = 39/207 (18%)

Query: 25  AKEGQSVQLECH---AEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSP 81
              G +V+L C    A     P ISW +                              SP
Sbjct: 14  VHAGGTVELPCSYQLANDTQPPVISWLKG----------------------------ASP 45

Query: 82  QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
             S      +   +    G            + +           TL++  +  +D G Y
Sbjct: 46  DRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRY 105

Query: 142 YCVAQNGIGRGARRKIEVKVEF--------APIVTVQSTRIGQALHHDMDLDCHIEAYPH 193
           +C       R         V            +    +  +     +D+ + C      +
Sbjct: 106 WCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN 165

Query: 194 PILYWAKDGEIVVNDEYHSISNFGTSE 220
             + W        N E  +        
Sbjct: 166 ANVTWYTGPTFFENYETGTYQPLANKN 192

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 65.0 bits (158), Expect = 5e-13
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 14/107 (13%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--------- 123
            P    N   L V       +L C AEG+P   + W   ++ +L    T           
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174

Query: 124 -TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTV 169
              STL   RI       +YC  +           E+ +   P+   
Sbjct: 175 NVTSTL---RINTTTNEIFYCTFRRLDP-EENHTAELVIPELPLAHP 217

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 60.0 bits (145), Expect = 3e-11
 Identities = 29/159 (18%), Positives = 53/159 (33%), Gaps = 30/159 (18%)

Query: 85  VAKEGQSVQLECHAEGHPIP-----TISWRRENNAIL--PNGQTIFTG------------ 125
           V + G ++ +EC              + W  E+  I+   +G+                 
Sbjct: 12  VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLL 71

Query: 126 --------STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQA 177
                   + LQI  +  +D G Y C+   G      ++I VKV        Q   +   
Sbjct: 72  KDQLSLGNAALQITDVKLQDAGVYRCMISYGGAD--YKRITVKVNAPYNKINQRILVVDP 129

Query: 178 LHHDMDLDCHIEAYPHPILYWAK-DGEIVVNDEYHSISN 215
           +  + +L C  E YP   + W   D +++      + S 
Sbjct: 130 VTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSK 168

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 10/98 (10%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGST 127
           +               +G  V+        P   + W +    I P+ + IF        
Sbjct: 6   SGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64

Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
           L I      D   YY  A +      +   E+ V   P
Sbjct: 65  LFINNCQMTDDSEYYVTAGD-----EKCSTELFVRSGP 97

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 61.6 bits (149), Expect = 1e-12
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 15/91 (16%)

Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIP--TISWRRENNAI------------LPNG 119
           P I    P+   A  G  V   C A        T +W  +N A+               G
Sbjct: 11  PQITVQ-PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69

Query: 120 QTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
           + +   + L++  +     G Y CV  N  G
Sbjct: 70  ELMEYTTILRLRNVEFTSEGXYQCVISNHFG 100

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 63.4 bits (153), Expect = 2e-12
 Identities = 24/165 (14%), Positives = 42/165 (25%), Gaps = 34/165 (20%)

Query: 82  QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAY 141
           ++   +E  SV L C A       I+W ++   I    +         +    K+ RG Y
Sbjct: 11  KVYDYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTED---KKKWNLGSNAKDPRGMY 64

Query: 142 YCVAQNGIGR-----------GARRKIEVKVEFAPIVTVQSTRIGQALH----------- 179
            C       +              +K   K + A     +                    
Sbjct: 65  QCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKV 124

Query: 180 ----HDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE 220
                 + L C    YP   + W  + + +  DE           
Sbjct: 125 SISGTTVILTC--PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDH 167

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 60.3 bits (145), Expect = 2e-11
 Identities = 30/201 (14%), Positives = 53/201 (26%), Gaps = 61/201 (30%)

Query: 17  NNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLG--------------------- 55
           N+  ++   +E  SV L C A       I+W ++ K +G                     
Sbjct: 7   NHLVKVYDYQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGM 63

Query: 56  -----------------RLHLAIPYTSPEAQVDTPPVILNNS--------------PQLS 84
                            R+  A       A+ D                           
Sbjct: 64  YQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYK 123

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT---GSTLQIPRITK-EDRGA 140
           V+  G +V L C    +P   I W+  +  I  +            L +   ++ E  G 
Sbjct: 124 VSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 181

Query: 141 YYCVAQNGIGRGARRKIEVKV 161
           Y C  +      A   + ++ 
Sbjct: 182 YVCYPRGSKPEDANFYLYLRA 202

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 62.2 bits (151), Expect = 3e-12
 Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 29/170 (17%)

Query: 80  SPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENN----AILPNGQTIFTGS-------- 126
           S     A  G +V L            ++W    N       PNG+     S        
Sbjct: 5   SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL 64

Query: 127 -----TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF-APIVTVQSTRIGQALHH 180
                 L+I  ++KEDRG YY    +      +  +EV      P++  + +        
Sbjct: 65  DKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNA------ 118

Query: 181 DMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
              L C +       L   +  E + +    ++S   T+       +CK 
Sbjct: 119 --TLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNL--RAPFKCKA 164

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 52.2 bits (125), Expect = 9e-09
 Identities = 19/183 (10%), Positives = 40/183 (21%), Gaps = 55/183 (30%)

Query: 8   QVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFKRL------------ 54
           Q  + P +         A  G +V L            ++W     +             
Sbjct: 2   QDQSVPNV--------NAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTV 53

Query: 55  ------GRLH-------LAIPYTSPE------AQVDTPPV--------ILNNSPQLSVAK 87
                  R+        L I   S E       ++             +     +  +  
Sbjct: 54  FESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYW 113

Query: 88  EGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN 147
           E  +  L C         +   +         + + +     +       R  + C A N
Sbjct: 114 ECSNATLTCEVLEGTDVELKLYQ-------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVN 166

Query: 148 GIG 150
            + 
Sbjct: 167 RVS 169

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 60.2 bits (146), Expect = 4e-12
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 11/113 (9%)

Query: 64  TSPEAQVDTPPVILNNSPQLSV-AKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI 122
           +S  +  D    I+  S ++ V A   + V L C     P   + W ++   ++ +   +
Sbjct: 2   SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALL 60

Query: 123 FTG----STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS 171
                    L +P +  ED G Y C   +           V V   P+  + S
Sbjct: 61  LQKEDTVRRLVLPAVQLEDSGEYLCEIDD-----ESASFTVTVTEPPVRIIYS 108

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 10/113 (8%)

Query: 64  TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF 123
           +     V    V +    +    +EG S    C         + W  +   +  N     
Sbjct: 3   SGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI 62

Query: 124 TGS-----TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS 171
                    L + ++  +D G  Y  A +      R    ++V   P V  +S
Sbjct: 63  DAQPGGYHVLTLRQLALKDSGTIYFEAGD-----QRASAALRVTEKPSVFSRS 110

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 5/26 (19%), Positives = 8/26 (30%)

Query: 25 AKEGQSVQLECHAEGHPIPTISWRRN 50
           +EG S    C         + W  +
Sbjct: 25 VQEGSSATFRCRISPANYEPVHWFLD 50

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 60.3 bits (145), Expect = 2e-11
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 12/162 (7%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTGSTL 128
           +   P+ +     +     G S QL C         ++ WR  + + L   Q+    S L
Sbjct: 3   LQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTS-LGAVQSDTGRSVL 61

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV-EFAPIVTVQSTRIGQALHHDMDLDCH 187
            +   +    G   CV   G GR  +  +++ V  F   +TV    +   +  D ++ C 
Sbjct: 62  TVRNASLSAAGTRVCVGSCG-GRTFQHTVQLLVYAFPNQLTVSPAAL---VPGDPEVACT 117

Query: 188 IEAYP-----HPILYWAKDGEIVVNDEYHSISNFGTSEGTTG 224
                              G+ +   +          E   G
Sbjct: 118 AHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQG 159

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 20/165 (12%), Positives = 38/165 (23%), Gaps = 29/165 (17%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFKRLGRL---------- 57
           +   P+ +     +     G S QL C         ++ WR     LG +          
Sbjct: 3   LQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLT 62

Query: 58  --------------HLAIPYTSPEAQVDTPPVILNNSPQLS-VAKEGQSVQLECHAEGHP 102
                           +    + +  V        N   +S  A      ++ C A    
Sbjct: 63  VRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVACTAHKVT 122

Query: 103 ---IPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCV 144
                 +S+          G         +     + D    + V
Sbjct: 123 PVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRV 167

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 63  YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI 122
                             P  +   EGQS    C       P ++W +++  +  + + +
Sbjct: 471 IRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYM 530

Query: 123 FT----GSTLQIPRITKEDRGAYYCVAQNGIGR 151
                    L I R+  +D+G Y   A+N  G 
Sbjct: 531 KRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGT 563

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 57.0 bits (138), Expect = 4e-11
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 66  PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG 125
           PE     P    +  P+      G     E   E      + W+R  + I  + +     
Sbjct: 1   PEP-GKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLAT 58

Query: 126 ----STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
                TL +  +   D+G+Y  +A +     ++ K ++KV 
Sbjct: 59  EGTRHTLTVREVGPADQGSYAVIAGS-----SKVKFDLKVI 94

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 57.6 bits (139), Expect = 5e-11
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 18/105 (17%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-------- 124
            P  +    QL  A E     +    +G P P++ W   N ++L     IFT        
Sbjct: 3   MPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVLNETSFIFTEFLEPAAN 57

Query: 125 ----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
                  L++ + T  + G Y  +A N  G+ A   I       P
Sbjct: 58  ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP 101

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 56.6 bits (137), Expect = 6e-11
 Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 6/90 (6%)

Query: 63  YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--- 119
           +                        +G  ++L           + W +    I  +G   
Sbjct: 5   HHHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKY 63

Query: 120 --QTIFTGSTLQIPRITKEDRGAYYCVAQN 147
             ++I    TL I + +  D  AY CV   
Sbjct: 64  IFESIGAKRTLTISQCSLADDAAYQCVVGG 93

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 60.4 bits (145), Expect = 7e-11
 Identities = 28/254 (11%), Positives = 54/254 (21%), Gaps = 64/254 (25%)

Query: 25  AKEGQSVQLECHAEGHPIPTISWRRNFKRL---------------GRLHLAIPYTSPE-- 67
            +     +  C         +      KR                G   + I     E  
Sbjct: 243 PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDA 302

Query: 68  ----------------------AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT 105
                                          +  SP +     G SV + C        +
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKS 362

Query: 106 ISWRRENNAILPNGQTIFTGS-----------------------TLQIPRITKEDRGAYY 142
           I +             +   S                       T+ + ++T  D G Y+
Sbjct: 363 IKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYW 422

Query: 143 CVAQNGIGRGARRKIEVKVEFAPIVTVQSTR--IGQALHHDMDLDCHIEAYPHPILYWAK 200
           C+           +I++      +    +    +G+ L       C   +Y      W  
Sbjct: 423 CLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNN 482

Query: 201 DGEIVVNDEYHSIS 214
            G   +  +    S
Sbjct: 483 TGCQALPSQDEGPS 496

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 60.4 bits (145), Expect = 8e-11
 Identities = 31/242 (12%), Positives = 58/242 (23%), Gaps = 72/242 (29%)

Query: 25  AKEGQSVQLECHAEGHPIPTIS-WRRNFKRLGRLHLAIPYTSPEAQVDTPP--------- 74
              G SV + C        +I  W             +  +    +              
Sbjct: 343 GVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPG 402

Query: 75  -----VILNN-----------------------------------SPQLSVAKEGQSVQL 94
                VILN                                     P    A  G+++++
Sbjct: 403 NGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKV 462

Query: 95  ECH----AEGHPIPTISWRRENNAILPNGQTIFTGS-----------TLQIPRITKEDRG 139
            CH       +      W       LP+     + +           +L +  +T+ D G
Sbjct: 463 PCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEG 522

Query: 140 AYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRI-------GQALHHDMDLDCHIEAYP 192
            Y+C  + G   G    + V VE       +   +        + +      +   +A  
Sbjct: 523 WYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGFREIENKAIQ 582

Query: 193 HP 194
            P
Sbjct: 583 DP 584

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 58.1 bits (139), Expect = 4e-10
 Identities = 17/146 (11%), Positives = 36/146 (24%), Gaps = 11/146 (7%)

Query: 86  AKEGQSVQLECHAEGHPIPTISWRRENNAILP-NGQTIFT------GSTLQIPRITKEDR 138
            +     +  C         +             G+ +          ++ I  + KED 
Sbjct: 243 PEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDA 302

Query: 139 GAYYCVAQNGIGRG---ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP- 194
           G Y C A +          +  ++ V     +    T +       + + C         
Sbjct: 303 GRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKS 362

Query: 195 ILYWAKDGEIVVNDEYHSISNFGTSE 220
           I YW              + + G  +
Sbjct: 363 IKYWCLWEGAQNGRCPLLVDSEGWVK 388

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 32/282 (11%), Positives = 66/282 (23%), Gaps = 85/282 (30%)

Query: 25  AKEGQSVQLECHAE---GHPIPTISWRRNFKRL-----------------GRLHL----- 59
           + EG SV + C+      +      W R   R                  GR +L     
Sbjct: 12  SVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPE 71

Query: 60  -----------------------AIPYTSPEAQVDTPPV---ILNNSPQLSVAKEGQSVQ 93
                                   I        V         L N  ++     G++V 
Sbjct: 72  NGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVT 131

Query: 94  LECHAEGHPIPTISWRRENNAILPNGQTIFTGS---------------------TLQIPR 132
           + C  +           +   + P      +G                      ++ I +
Sbjct: 132 INCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 191

Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPI----------VTVQSTRIGQALHHDM 182
           +   D G Y C A +      ++  +++V               VT     +G  + +  
Sbjct: 192 LRLSDAGQYLCQAGDD-SNSNKKNADLQVLKPEPELVYEDLRGSVTFH-CALGPEVANVA 249

Query: 183 DLDCHIEAYPHPILYWAKDG-EIVVNDEYHSISNFGTSEGTT 223
              C   +  +  +     G      +    ++        +
Sbjct: 250 KFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFS 291

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 23/172 (13%), Positives = 46/172 (26%), Gaps = 25/172 (14%)

Query: 80  SPQLSVAKEGQSVQLECHAE---GHPIPTISWRRENNAILPNGQTIFTGS---------- 126
            P+   + EG SV + C+      +      W R+             G           
Sbjct: 6   GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRAN 65

Query: 127 ----------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQ 176
                      + I +++++D G Y C       RG    + ++V   P +   +     
Sbjct: 66  LTNFPENGTFVVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLNDTKVYTV 124

Query: 177 ALHHDMDLDCHIEA-YPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQ 227
            L   + ++C  +           K   +       S      +      L 
Sbjct: 125 DLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLD 176

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 56.9 bits (137), Expect = 7e-11
 Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 14/120 (11%)

Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN-AILPNGQTIFTGS------ 126
             + N++  ++V  EGQ++ L+C        ++ W   +   I  N   +   S      
Sbjct: 2   GSLTNHTETITVE-EGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH 60

Query: 127 ------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHH 180
                 ++ +P +T +D G Y C+  +        K+ V            +      HH
Sbjct: 61  HSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSHWRPLEHH 120

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 58.0 bits (140), Expect = 8e-11
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 31/167 (18%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL--PNGQTIFTGS------------ 126
            Q        +V         P+  + W+++ + +    N +     S            
Sbjct: 2   SQQIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG 60

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF---APIVTVQSTRIGQALHHDMD 183
           +L I  +T  D   Y   + N        K  + V      P++  + +        +  
Sbjct: 61  SLTIYNLTSSDEDEYEMESPNITD---TMKFFLYVLEMVSKPMIYWECS--------NAT 109

Query: 184 LDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
           L C +       L   +  E + +    ++S   T+       +CK 
Sbjct: 110 LTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNL--RAPFKCKA 154

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 49.9 bits (119), Expect = 5e-08
 Identities = 16/163 (9%), Positives = 37/163 (22%), Gaps = 43/163 (26%)

Query: 24  VAKEGQSVQLECHAEGHPIPTISWRRNFKRL---------------GRLHL--------- 59
                 +V         P+  + W++   ++                R++L         
Sbjct: 6   YGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64

Query: 60  -------AIPYT-SPEAQVDTPPVILN---NSPQLSVAKEGQSVQLECHAEGHPIPTISW 108
                     Y        DT    L       +  +  E  +  L C         +  
Sbjct: 65  YNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKL 124

Query: 109 RRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR 151
            +         + + +     +       R  + C A N + +
Sbjct: 125 YQ-------GKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQ 160

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 56.9 bits (137), Expect = 8e-11
 Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 17/104 (16%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAILPNG-------------QTIFT 124
           PQ    K G+ +      +   +   PTI W +     L +               +   
Sbjct: 14  PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 73

Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT 168
              +QI +      G Y C              +++V  +   T
Sbjct: 74  TFEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHESTGTT 116

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 56.5 bits (136), Expect = 9e-11
 Identities = 15/96 (15%), Positives = 23/96 (23%), Gaps = 16/96 (16%)

Query: 71  DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAILPNG-------- 119
           D P  +    PQ      G S+       G  +   P + W +     L +         
Sbjct: 1   DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60

Query: 120 -----QTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
                 +      L I        G+Y C       
Sbjct: 61  DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDK 96

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 58.1 bits (140), Expect = 9e-11
 Identities = 23/173 (13%), Positives = 46/173 (26%), Gaps = 23/173 (13%)

Query: 80  SPQLSVAKEGQSVQLEC-HAEGHPIPTISWRRENNAIL-------------------PNG 119
           +P +     G+SV L      G  +  I+W     ++                       
Sbjct: 4   TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKR 63

Query: 120 QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH 179
                  +LQ+  +  ED G+Y                   +     + V +        
Sbjct: 64  LNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNM 123

Query: 180 HD-MDLDCHIE-AYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
              + L C +E A  +    W   G  + +    ++S +     +     C  
Sbjct: 124 TCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVS-WDPRISSEQDYTCIA 175

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 11/82 (13%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQI 130
               + N+S           + L C  E      +  W          G T+ +   L +
Sbjct: 109 RNIQVTNHSQ--LFQNMTCELHLTCSVEDADDNVSFRWEA-------LGNTLSSQPNLTV 159

Query: 131 -PRITKEDRGAYYCVAQNGIGR 151
                      Y C+A+N +  
Sbjct: 160 SWDPRISSEQDYTCIAENAVSN 181

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 12/102 (11%)

Query: 67  EAQVDTPPVILNNSPQLS--VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT 124
            +      V     P      A+ G S  L C         ++W ++   +  + +    
Sbjct: 2   SSGSSGKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVE 60

Query: 125 ----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
                  L + +  + + G Y C A      G +    ++V 
Sbjct: 61  AVGCTRRLVVQQAGQAEAGEYSCEA-----GGQQLSFRLQVA 97

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTGS--TL 128
                         +E  +    C    HP  T++WR+    +  +G  Q    G    L
Sbjct: 8   ANCFTEE-LTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRL 65

Query: 129 QIPRITKEDRGAYYCVA 145
            I  + K D   Y C  
Sbjct: 66  TISALEKADSDTYTCDI 82

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 57.5 bits (138), Expect = 3e-10
 Identities = 28/189 (14%), Positives = 51/189 (26%), Gaps = 38/189 (20%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTG 125
           E ++  PP++            G+SV L+C   G H    + W   + +           
Sbjct: 1   EVRLSVPPLV--------EVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEM 52

Query: 126 S------------------------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
                                     L +      D   Y CV + G    A     + V
Sbjct: 53  QGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNV 112

Query: 162 EFAP----IVTVQSTRIGQALHHDMDLDCHIE-AYPHPILYWAKDGEIVVNDEYHSISNF 216
              P    +   + T             C+     P P + W ++G+ +      +   +
Sbjct: 113 FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172

Query: 217 GTSEGTTGS 225
            TS     +
Sbjct: 173 MTSRTVREA 181

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 52.9 bits (126), Expect = 1e-08
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 20/106 (18%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAI--------------- 115
               +  N   LSV ++       C++  G+P P I+W R    +               
Sbjct: 117 EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSR 176

Query: 116 --LPNGQTIFTGSTLQIPRITKEDRGA-YYCVAQNGIGRGARRKIE 158
                   +   STL + R+ K+DR A ++C A   +  G   +++
Sbjct: 177 TVREASGLLSLTSTLYL-RLRKDDRDASFHCAAHYSLPEGRHGRLD 221

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 47.9 bits (113), Expect = 5e-07
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 11  TPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL---GRLHLAIPYTSP 66
               +  N   LSV ++       C++  G+P P I+W RN +RL     ++     TS 
Sbjct: 117 EATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSR 176

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRR 110
             +  +  + L ++  L + K+ +     C A  + +P     R
Sbjct: 177 TVREASGLLSLTSTLYLRLRKDDRDASFHCAAH-YSLPEGRHGR 219

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 57.5 bits (138), Expect = 4e-10
 Identities = 35/244 (14%), Positives = 68/244 (27%), Gaps = 60/244 (24%)

Query: 12  PPVILNNSTQLSVAKEGQSVQLECHAEG-HPIP---TISWRRNFKRL----GRLHL---- 59
              +   S +      G    L     G  P+P   T +W ++ +        L +    
Sbjct: 2   AFTVSIQSNKRCFL-AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADAT 60

Query: 60  ---AIPYT------------SPEAQV--DTPPVILNNSPQLSVAKEGQSVQLEC---HAE 99
              A  Y               E  +  +   ++    PQ         V+L      + 
Sbjct: 61  SENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSG 120

Query: 100 GHPIP-----TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR 154
           G           SW +           I T   + I   T +  G Y           + 
Sbjct: 121 GKTPADNYELHYSWSK-------GEDVIDTTQDITIQEFTADKNGVYTVKVWGESED-SA 172

Query: 155 RKIEVKVEFAPI------VTVQSTRIGQ--ALHHDMDLDCHIEAYPHPIL------YWAK 200
                K+  A +      V  ++  +G   +L++ +  D   ++   P L      Y  +
Sbjct: 173 ASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQR 232

Query: 201 DGEI 204
           +G++
Sbjct: 233 EGQL 236

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 56.8 bits (136), Expect = 7e-10
 Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 23/172 (13%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP---TISWRRENNAILPNGQTIFTGSTL 128
              + +          G    L     G  P+P   T +W +++        T    +TL
Sbjct: 2   AFTV-SIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPH--ENNT----ATL 54

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALH--HDMDLDC 186
            +   T E+ G+Y    Q+     +       +E A ++   +      +    D++L  
Sbjct: 55  TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114

Query: 187 HIEAY---PHPILY-----WAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
            ++          Y     W+K  +++   +  +I     +    G    KV
Sbjct: 115 TVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQE--FTADKNGVYTVKV 164

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 26/193 (13%), Positives = 48/193 (24%), Gaps = 53/193 (27%)

Query: 11  TPPVILNNSTQLSVAKEGQSVQLEC---HAEGHPIP-----TISWRRNFKRLGRLH-LAI 61
              ++     Q         V+L      + G           SW +    +     + I
Sbjct: 90  AELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITI 149

Query: 62  P---------YT------------SPEAQVDTPPVILNNSPQLSV-AKEGQSVQLEC--- 96
                     YT            S   ++    + ++     S     G  + L     
Sbjct: 150 QEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVS 209

Query: 97  -----HAEGHPIPTISW---RRENNAILP-----------NGQTIFTGSTLQIPRITKED 137
                 + G P  TI +    +    + P            G +I     L     T +D
Sbjct: 210 EDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDD 269

Query: 138 RGAYYCVAQNGIG 150
              ++CVA+    
Sbjct: 270 TAKFWCVAKLYQQ 282

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTL 128
           P  I+       V   G+ V+L C       P + W ++  AI  + +         + L
Sbjct: 8   PAAIIKPLEDQWV-APGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAML 65

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
            I   + +D G Y C  +      A   +E K  
Sbjct: 66  VIRGASLKDAGEYTCEVEASKST-ASLHVEEKAS 98

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 73  PPVILNNSPQLSV-AKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG----ST 127
           P  IL+   ++S+     + V L C          +W ++   +  +   +         
Sbjct: 8   PVHILSPQDKVSLTFTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHR 66

Query: 128 LQIPRITKEDRGAYYCVAQN 147
           L +P    +D G + C  + 
Sbjct: 67  LILPEAKVQDSGEFECRTEG 86

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 53.8 bits (130), Expect = 6e-10
 Identities = 10/66 (15%), Positives = 18/66 (27%), Gaps = 5/66 (7%)

Query: 86  AKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTG--STLQIPRITKEDRGAY 141
              G++   E      P     W+ +   +  +   + I  G    L +        G  
Sbjct: 17  VFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEV 75

Query: 142 YCVAQN 147
              A N
Sbjct: 76  SFQAAN 81

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 11/106 (10%)

Query: 64  TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF 123
           TS    V   P+      +   A EG +  L C         + W + +  +    +   
Sbjct: 9   TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSL 66

Query: 124 TGS----TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
                   LQI  +  ED G Y C+         R    + V   P
Sbjct: 67  RQDGARCELQIRGLVAEDAGEYLCMCGK-----ERTSAMLTVRAMP 107

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 53.5 bits (129), Expect = 7e-10
 Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGSTL 128
           P      + +     EG +  L C       P + W   NN + P  +           L
Sbjct: 8   PVRFQE-ALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLEL 65

Query: 129 QIPRITKEDRGAYYCVA 145
            +  +  +D G Y C  
Sbjct: 66  VVRNLRPQDSGRYSCSF 82

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS----TL 128
           P     +  +   A EG +  L+C      +  + W++    +   G+           L
Sbjct: 8   PARFTQD-LKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCEL 64

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS 171
           QI  ++  D G Y C+         R    + V   P    + 
Sbjct: 65  QIHDLSVADAGEYSCMCGQ-----ERTSATLTVRALPARFTEG 102

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 53.5 bits (129), Expect = 8e-10
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 8/85 (9%)

Query: 86  AKEGQSVQLECH-AEGHPIPTISWRRENNAILPNGQTIFTG----STLQIPRITKEDRGA 140
             EG+S   EC  +         W      +  + +   T       L +      D G 
Sbjct: 20  VLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGE 79

Query: 141 YYCVAQNGIGRGARRKIEVKVEFAP 165
                +    +     + V+    P
Sbjct: 80  VVFSVRGLTSKA---SLIVRERSGP 101

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 55.4 bits (133), Expect = 1e-09
 Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 23/144 (15%)

Query: 85  VAKEGQSVQLECH----AEGHPIPTISWRRENNAILP--NGQTIFTGS------------ 126
             +  +   L C      E      I W++E   +L   +G                   
Sbjct: 5   TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN 64

Query: 127 -TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE---FAPIVTVQSTRIGQALHHDM 182
            ++ I  +   D G Y CV         +R+   +V     A   T   +       +  
Sbjct: 65  LSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIR 124

Query: 183 DLDCHIE-AYPHPILYWAKDGEIV 205
            + C     +P P L W ++GE +
Sbjct: 125 RIICSTSGGFPEPHLSWLENGEEL 148

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 13/90 (14%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTG-- 125
            +         S            ++ C   G  P P +SW      +     T+     
Sbjct: 101 TLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPE 160

Query: 126 -------STLQIPRITKEDRGAYYCVAQNG 148
                  S L           ++ C+ + G
Sbjct: 161 TELYAVSSKL---DFNMTTNHSFMCLIKYG 187

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 56.0 bits (134), Expect = 1e-09
 Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 35/184 (19%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECH---AEGHPIPTISWRRENNAILPNGQTIFTGS--- 126
            P +  +SPQL V   G+SV + C     E   +  + W    +    +   +F  S   
Sbjct: 5   LPGLTVSSPQLRVH-VGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63

Query: 127 ---------------------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
                                +L +  + K D G Y C  +         K  V++    
Sbjct: 64  VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMV-MKKPVELW--- 119

Query: 166 IVTVQSTRIGQALHHDMDLDCHIEAYPHP---ILYWAKDGEIVVNDEYHSISNFGTSEGT 222
           ++  +   +   +     + C I++        + W         +E     +     G 
Sbjct: 120 VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGK 179

Query: 223 TGSL 226
             SL
Sbjct: 180 FQSL 183

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 52.6 bits (125), Expect = 2e-08
 Identities = 24/170 (14%), Positives = 45/170 (26%), Gaps = 40/170 (23%)

Query: 2   YTSPESQVDTPPVILN---NSTQLSVAKEGQSVQLECHAEGHP---IPTISWRRNFKRLG 55
               ES V   PV L       +    + G + Q+ C  +      +  ++W  +     
Sbjct: 104 RLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHT 163

Query: 56  RLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI 115
                + Y S                                         S  R  N +
Sbjct: 164 EEETVLSYDS---------------------------------NMRSGKFQSLGRFRNRV 190

Query: 116 LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
              G       ++++  + + D+G Y C    G    +R+ I + V    
Sbjct: 191 DLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE-SRKTIVLHVVQDE 239

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 12/87 (13%), Positives = 23/87 (26%), Gaps = 8/87 (9%)

Query: 86  AKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG----STLQIPRITKEDRGAY 141
            K  +    +C        T  W +    + P+ +   +       L I  +  ED G Y
Sbjct: 20  VKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDY 78

Query: 142 YCVAQNGIGRGARRKIEVKVEFAPIVT 168
             V             ++      +  
Sbjct: 79  TFVPDGYAL---SLSAKLNFLEIKVSG 102

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 10/84 (11%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--------T 124
           P +I+    +      G  V++           + W +    +                 
Sbjct: 8   PVLIVT-PLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGK 65

Query: 125 GSTLQIPRITKEDRGAYYCVAQNG 148
              L    + +EDRG Y  +   G
Sbjct: 66  RHILIFSDVVQEDRGRYQVITNGG 89

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 16/99 (16%), Positives = 27/99 (27%), Gaps = 10/99 (10%)

Query: 71  DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTG--S 126
            +   IL           G+ + L+C    +      W +    +  +   + +  G   
Sbjct: 5   SSGLKILT-PLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIH 61

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
            L I     ED G Y                +V V   P
Sbjct: 62  KLVIANALTEDEGDYVFAPDAY---NVTLPAKVHVISGP 97

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 55.2 bits (132), Expect = 5e-09
 Identities = 26/174 (14%), Positives = 44/174 (25%), Gaps = 34/174 (19%)

Query: 27  EGQSVQLECHAEGHPIPTISWRRN---FKRLGRLHLAIP--------------------- 62
               + +       P+    W  +    +   R  LAI                      
Sbjct: 90  PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGY 149

Query: 63  YTSPEAQVDTPP---VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG 119
               E +V   P          Q      GQ    +C A G  +       +   +    
Sbjct: 150 LAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAP 209

Query: 120 QTIF-------TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPI 166
                        ++  +   TK D G Y C+ +   G G     E+ V+  P+
Sbjct: 210 LKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV 263

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 51.8 bits (124), Expect = 5e-09
 Identities = 13/107 (12%), Positives = 32/107 (29%), Gaps = 14/107 (13%)

Query: 68  AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS- 126
           ++V         +  ++V  EG +  L C  + +   ++ W       L           
Sbjct: 1   SKVKGSQGQFPLTQNVTVV-EGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDN 59

Query: 127 ------------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
                       ++ +  ++  D G Y C       + ++  + V  
Sbjct: 60  RIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLG 106

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----- 123
              +  +++    + + A  G+ V+LEC         + W +    I+P  ++ +     
Sbjct: 2   SSGSSGIMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVE 60

Query: 124 -TGSTLQIPRITKEDRGAYYCVAQNG 148
                L I   TK D   Y  +   G
Sbjct: 61  GKKHILIIEGATKADAAEYSVMTTGG 86

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 52.1 bits (124), Expect = 7e-09
 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 13/110 (11%)

Query: 65  SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT 124
              A ++                 G +V L+C  + H   ++ W       L  G+    
Sbjct: 29  KAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRAL 88

Query: 125 GS-------------TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
                          ++ I  +   D G Y C       R A+  + V  
Sbjct: 89  RDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLG 138

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 52.6 bits (125), Expect = 2e-08
 Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 6/88 (6%)

Query: 80  SPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILP-NGQTIFTGSTLQIPRITKED 137
           +  +  +  G SV L C   E     T+ W     A      +    G  L +  +   D
Sbjct: 12  ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHD 71

Query: 138 RGAYYCVAQNGIGRGARRKIEVKVEFAP 165
            G Y C             + + V+  P
Sbjct: 72  SGNYSCYRAGRPAGT----VHLLVDVPP 95

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 52.2 bits (124), Expect = 3e-08
 Identities = 30/209 (14%), Positives = 51/209 (24%), Gaps = 48/209 (22%)

Query: 9   VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIP--TISWRRNFKRL----------- 54
           V   P  +  +   S    G+++ L C  EG  P    T+   R  K L           
Sbjct: 82  VYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE 141

Query: 55  -------GRLHLAIPYT--------------------SPEAQVDTPPVILNNSPQLSVAK 87
                   R H    ++                      + Q    P          V +
Sbjct: 142 VTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLE 201

Query: 88  EGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTGSTLQIP---RITKEDRGAYYC 143
                 + C  +G  P+              N    +   +        +T ED G    
Sbjct: 202 VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRL 261

Query: 144 VAQNGIGRG---ARRKIEVKVEFAPIVTV 169
                +G       + + +    AP V +
Sbjct: 262 TCAVILGNQSQETLQTVTIYSFPAPNVIL 290

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 49.5 bits (117), Expect = 3e-07
 Identities = 27/222 (12%), Positives = 58/222 (26%), Gaps = 43/222 (19%)

Query: 24  VAKEGQSVQLECHAEGHPIPTISWRRNFKR-------LGRLHLAIPYTSPEAQ------- 69
           +   G SV + C         +       +         R    +     ++Q       
Sbjct: 10  ILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNC 69

Query: 70  ------------VDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP--TISWRRENNA 114
                       V   P  +  +P  S    G+++ L C  EG  P    T+   R    
Sbjct: 70  PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE 129

Query: 115 ILPNGQTIFTGSTLQIPRITKEDRGAYY-CVAQNGIG-------RGARRKIEVKVEFAPI 166
           +                 + ++  GA + C  +  +               +++    P 
Sbjct: 130 LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPA 189

Query: 167 VTVQ--STRIGQALHHDMDLDCHIEAYPHP---ILYWAKDGE 203
              Q  S R+ +       + C ++         ++ A   +
Sbjct: 190 TPPQLVSPRVLEV-DTQGTVVCSLDGLFPVSEAQVHLALGDQ 230

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 19/144 (13%), Positives = 47/144 (32%), Gaps = 10/144 (6%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITK-EDR 138
           SP   +   G SV + C         +         LP  + +  G+  ++  ++  ++ 
Sbjct: 5   SPSKVILPRGGSVLVTCSTSCDQPKLLGIETP----LPKKELLLPGNNRKVYELSNVQED 60

Query: 139 GAYYCVAQNGIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEA---YPHP 194
               C +    G+   +   + V + P  V +      Q +  ++ L C +E      + 
Sbjct: 61  SQPMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANL 119

Query: 195 ILYWAKDGEIVVNDEYHSISNFGT 218
            +   +  + +  +         T
Sbjct: 120 TVVLLRGEKELKREPAVGEPAEVT 143

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 24/162 (14%), Positives = 46/162 (28%), Gaps = 32/162 (19%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIP-----TISWRR-----------------ENNAILP 117
                      +V + C+             I+W                      A  P
Sbjct: 10  GGTQITPL-NDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRP 68

Query: 118 NGQTIFTGS-----TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST 172
                         +L++P I  E+ G Y C       +  +  ++++V  +P   +   
Sbjct: 69  GAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLD 127

Query: 173 RIGQALHHDMDLDCHIEA-YPHPI-LYWAKDGEIVVNDEYHS 212
           ++G   + D    C     YP  I + W K  +   +    S
Sbjct: 128 QVGMKENEDK-YMCESSGFYPEAINITWEKQTQKFPHPIEIS 168

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 8/139 (5%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRG 139
            P+++  + G S+ L C                                Q+  I  E   
Sbjct: 8   QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGL--RWLARQLVDIR-EPET 64

Query: 140 AYYCVAQNGIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIE-AYPHPIL- 196
              C  +    R  + +  ++    P  V +      Q +  +  L C +  A P   L 
Sbjct: 65  QPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLT 123

Query: 197 -YWAKDGEIVVNDEYHSIS 214
               +  + ++   +    
Sbjct: 124 LTLLRGAQELIRRSFAGEP 142

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 19/167 (11%), Positives = 42/167 (25%), Gaps = 35/167 (20%)

Query: 19  STQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR------LGRLHLAIP---------- 62
             +++  + G S+ L C              + +R      L  L   +           
Sbjct: 8   QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPV 67

Query: 63  --YTSPEAQVDTPPVILNNSPQLSV--------AKEGQSVQLECHAEG-HPIP--TISWR 109
             +      +    +I        V           G++  L C   G  P    T++  
Sbjct: 68  CFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLL 127

Query: 110 RENNAILPNGQTIFTG------STLQIPRITKEDRGAYYCVAQNGIG 150
           R    ++                T  +    ++    + C A+  + 
Sbjct: 128 RGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 24/116 (20%)

Query: 68  AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISWRRENNAILP----NGQT 121
             ++T   I         A++G S+ L+CH       +  ++W +++  +       G  
Sbjct: 5   GTIETTGNI--------SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWH 56

Query: 122 I----------FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIV 167
           I            G  L +  +T  D G Y+C+           +I ++V  + + 
Sbjct: 57  ISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVA 112

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 20/130 (15%), Positives = 39/130 (30%), Gaps = 9/130 (6%)

Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRI 133
             +            G+ V L C  +      I+W  + ++     + + +G TL I   
Sbjct: 6   KDVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSS-----EVLGSGKTLTIQVK 58

Query: 134 TKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH 193
              D G Y C     +   +   +  K +   I +    +  +   +   L C  + Y  
Sbjct: 59  EFGDAGQYTCHKGGEVLSHSLLLLHKKED--GIWSTDILKDQKEPKNKTFLRCEAKNYSG 116

Query: 194 PILYWAKDGE 203
               W     
Sbjct: 117 RFTCWWLTTI 126

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 42/185 (22%)

Query: 85  VAKEGQSVQLECH---AEGHPIPTISWRRENNA----ILPNGQTIFTG------------ 125
           +A  G+   L CH           + W   +      +  +G+ +               
Sbjct: 15  LAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSIL 74

Query: 126 --------STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQA 177
                   + L+I  +T  D G Y C  Q+G       K  V+++ A + +     +   
Sbjct: 75  RDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYE---KALVELKVAALGSDLHVDVKGY 131

Query: 178 LHHDMDLDCHIE-AYPHPILYWAKDG--------EIVVNDE---YHSISNFGTSEGTTGS 225
               + L+C     YP P + W+ +           VV D    Y   ++      +   
Sbjct: 132 KDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEG 191

Query: 226 LQCKV 230
           + C +
Sbjct: 192 VSCTI 196

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 45.5 bits (107), Expect = 4e-06
 Identities = 17/113 (15%), Positives = 35/113 (30%), Gaps = 15/113 (13%)

Query: 65  SPEAQVDTPPVILNNSPQLSV-AKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTI 122
             +A V+     L +   + V   +   + LEC + G +P P I W       +P  +  
Sbjct: 108 YEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAP 167

Query: 123 FTG---------STLQIPRITKEDRGAYYCVAQNGI-GRGARRKIEVKVEFAP 165
                       +++    +         C  ++ + G      I +   F  
Sbjct: 168 VVADGVGLYAVAASV---IMRGSSGEGVSCTIRSSLLGLEKTASISIADPFFR 217

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 17/103 (16%), Positives = 30/103 (29%), Gaps = 16/103 (15%)

Query: 64  TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAILP--- 117
           +S  +  + P  +    P     + G+   +     G  +   PTI W +     L    
Sbjct: 2   SSGSSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKS 61

Query: 118 ----------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
                     N  +      L I ++   DRG Y    +    
Sbjct: 62  GARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDT 104

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR 132
           P +  +      V   G+++ L C +   P    S  +E    LP  Q+    +   +  
Sbjct: 107 PFLSADRGL---VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGP 163

Query: 133 ITKEDRGAYYCVA 145
           +     G Y C  
Sbjct: 164 VDLNVSGIYRCYG 176

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 7/127 (5%)

Query: 84  SVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGST---LQIPRITKEDRG 139
            V     SV+++C A     +  +   + +       +  F   T     I  +     G
Sbjct: 18  PVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAG 77

Query: 140 AYYCVAQNGIGRGARRK---IEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPIL 196
            Y C  + G  R        + V   +          +      ++ L C     P    
Sbjct: 78  RYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRF 137

Query: 197 YWAKDGE 203
             AK+GE
Sbjct: 138 SLAKEGE 144

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 44.5 bits (104), Expect = 6e-06
 Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 57/180 (31%)

Query: 20  TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLG---RLHLAIP----------YT-- 64
            +  V+  G SV+L C  +      + W +N + L      HL +           Y   
Sbjct: 6   IEYKVSISGTSVELTCPLD--SDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCY 63

Query: 65  ---------------------------------SPEAQVDTPPVILNNSP-QLSVAKEGQ 90
                                              +A+ D        +  Q+  ++   
Sbjct: 64  TPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDG 123

Query: 91  SVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
           SV L C        TI W ++ + I P   T    +T  +    K+ RG Y C       
Sbjct: 124 SVLLTCGL---TDKTIKWLKDGSIISPLNAT---KNTWNLGNNAKDPRGTYQCQGAKETS 177

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 44.9 bits (106), Expect = 9e-06
 Identities = 22/159 (13%), Positives = 37/159 (23%), Gaps = 14/159 (8%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP---NGQTIFTGS--T 127
               L   P   + K G+ V L+C ++          +E  +  P    GQ     S   
Sbjct: 118 RKPSLLAHPG-PLVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKAN 175

Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRK------IEVKVEFAPIVTVQSTRIGQALHHD 181
             I  +     G Y C                   I V   +                  
Sbjct: 176 FSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGES 235

Query: 182 MDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSE 220
           + L C   +        +++G               T +
Sbjct: 236 VTLSCSSRSSYDMYH-LSREGGAHERRLPAVRKVNRTFQ 273

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 21/147 (14%), Positives = 37/147 (25%), Gaps = 12/147 (8%)

Query: 84  SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYC 143
           +V   G  V L CH   H        +E+   +P         +  +  +T    G Y C
Sbjct: 33  AVVPRGGHVTLRCHYR-HRFNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTC 91

Query: 144 VAQNGIGRGAR------RKIEVKVEFAP--IVTVQSTRIGQALHHDMDLDCHIEAYPHPI 195
              +               I V        ++      +       + L C  +      
Sbjct: 92  RGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLV--KSGERVILQCWSDIMFEHF 149

Query: 196 LYWAKDGEIVVNDEYHSISNFGTSEGT 222
               K+G            + G S+  
Sbjct: 150 F-LHKEGISKDPSRLVGQIHDGVSKAN 175

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 44.4 bits (103), Expect = 1e-05
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 90  QSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGSTLQIPRITKEDRGAYYCVAQ- 146
            + +L+C  +   +  + W+ +N  +        +     L I  +++ D G Y C+++ 
Sbjct: 549 GTAELKCSQK-SNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE 607

Query: 147 NGIGRGARR---KIEVKVEFAPIVTVQST 172
               +   +   K  ++V+  P   V  T
Sbjct: 608 RVKNKTVFQVVAKHVLEVKVVPKPVVAPT 636

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 17/94 (18%)

Query: 85  VAKEGQSVQLECHA-EGHPIPTISWRRENNAIL----PNGQTIFTGS------------T 127
               G +V L            ++W    +  +          F                
Sbjct: 15  TVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGA 74

Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
           L I ++ KED   Y        G     KI+++V
Sbjct: 75  LYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B* Length = 120

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 22/108 (20%), Positives = 30/108 (27%), Gaps = 30/108 (27%)

Query: 63  YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECH----AEGHPIPTISWRRENNA---I 115
           Y      V  PP I           EG S  L C          I +++W R+       
Sbjct: 4   YFQGALWVSQPPEI--------RTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKE 55

Query: 116 LPNGQTIFTG---------------STLQIPRITKEDRGAYYCVAQNG 148
           + NG   F G               + L I  +   D   Y C  +  
Sbjct: 56  VRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVL 103

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 21/112 (18%), Positives = 28/112 (25%), Gaps = 26/112 (23%)

Query: 80  SPQLSVAKEGQSVQLECH--AEGHPIPTISWRRENNAILPNGQTI--------------- 122
           S        G  V L C        I  + W           +++               
Sbjct: 3   SHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSR 62

Query: 123 --FTGS------TLQIPRITKEDRGAYYC-VAQNGIGRGARRKIEVKVEFAP 165
               G+      +L I      D G Y C V   G        +EVK E  P
Sbjct: 63  YQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 17/106 (16%), Positives = 26/106 (24%), Gaps = 14/106 (13%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLEC-------HAEGHPIPTISWRRENNAILPNGQTI 122
           +D    I   SP+  V +   +    C                I W+  +  I     TI
Sbjct: 2   LDPCGYI---SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI 58

Query: 123 --FTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAP 165
              T S++    I         C              I +     P
Sbjct: 59  INRTASSVTFTDIAS-LNIQLTCNILTFGQLEQNVYGITIISGLPP 103

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 40/253 (15%), Positives = 73/253 (28%), Gaps = 32/253 (12%)

Query: 4   SPESQVDTPPVILNN-----STQLSV-AKEGQSVQLECHAEGHPIPTISWRRNFKRLGRL 57
           S  S V T P +L +     S+ ++V +    S  + C+       T   ++   R    
Sbjct: 159 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCG- 217

Query: 58  HLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISWRRE---- 111
                        +   V +             + ++ C         P + +       
Sbjct: 218 ----CKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNV 273

Query: 112 --NNAILPNGQTIFTG-----STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE-- 162
             + A     +  F       S L I      +   + C   +        K   K +  
Sbjct: 274 EVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGK 333

Query: 163 -FAPIVTVQSTRIGQALHHDMDLDCHIEAY-PHPI-LYWAKDGEIVVNDEYHSISNFGTS 219
             AP V        Q     + L C I  + P  I + W  DG+   N  Y +      +
Sbjct: 334 PRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPEN--YKNTQPIMDT 391

Query: 220 EGTTGSLQCKVPV 232
           +G+   +  K+ V
Sbjct: 392 DGSY-FVYSKLNV 403

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 14/126 (11%), Positives = 30/126 (23%), Gaps = 8/126 (6%)

Query: 84  SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGST---LQIPRITKEDRGA 140
            +  + + V + C    +         E +    +              IP +     G 
Sbjct: 16  FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQ 74

Query: 141 YYCVAQNGIG---RGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY 197
           Y C+ + G           + V   +                  +   C ++      L 
Sbjct: 75  YSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLL 134

Query: 198 WAKDGE 203
             K+G 
Sbjct: 135 L-KEGR 139

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 4/77 (5%)

Query: 71  DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQI 130
           DTP + ++  P       G+ V   C  +          +E  +           +   +
Sbjct: 101 DTPTLSVHPGP---EVISGEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQAEFPL 156

Query: 131 PRITKEDRGAYYCVAQN 147
             +T   RG Y C    
Sbjct: 157 GPVTTAHRGTYRCFGSY 173

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 19/155 (12%), Positives = 40/155 (25%), Gaps = 11/155 (7%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRG 139
            P+    +   S+++ C    +           N IL + Q                   
Sbjct: 8   RPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQA----QWKHYLVSNISHDT 63

Query: 140 AYYCVAQNGIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIE-AYPHPIL- 196
              C      G+       V V   P  V +       A+     ++C +    P   L 
Sbjct: 64  VLQCHFTCS-GKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLT 122

Query: 197 -YWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV 230
            +  +  E +  + +   +     +  T +     
Sbjct: 123 LFLFRGNETLHYETFGKAA--PAPQEATATFNSTA 155

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 41.0 bits (96), Expect = 8e-05
 Identities = 14/126 (11%), Positives = 30/126 (23%), Gaps = 8/126 (6%)

Query: 84  SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGST---LQIPRITKEDRGA 140
            +  + + V + C    +         E +    +              IP +     G 
Sbjct: 13  FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQ 71

Query: 141 YYCVAQNGIGRGARR---KIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY 197
           Y C+ + G           + V   +                  +   C ++      L 
Sbjct: 72  YSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFL- 130

Query: 198 WAKDGE 203
             K+G 
Sbjct: 131 LLKEGR 136

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR 132
               L+  P   V   G+ V   C  +          +E  +           +   +  
Sbjct: 98  DTPTLSVHPGPEV-ISGEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQAEFPLGP 155

Query: 133 ITKEDRGAYYCVA 145
           +T   RG Y C  
Sbjct: 156 VTTAHRGTYRCFG 168

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 21/177 (11%), Positives = 40/177 (22%), Gaps = 18/177 (10%)

Query: 64  TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP----TISWRRENNAILPNG 119
                          + P        +S  + C             ++W R +   + + 
Sbjct: 103 KKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS 162

Query: 120 QTI---FTG------STLQIPRITKEDRGAYYCVAQNGI---GRGARRKIEVKVEFAPIV 167
                          STL +      +   Y C   +                   AP V
Sbjct: 163 TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEV 222

Query: 168 TVQSTRIGQALHHDMDLDCHIEA-YPHPI-LYWAKDGEIVVNDEYHSISNFGTSEGT 222
              +T           L C I+   P  I + W  +   + +  + +     T    
Sbjct: 223 YAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSG 279

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 39.4 bits (91), Expect = 1e-04
 Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT---GSTLQIPRITK-EDRGA 140
           V+  G +V L C     P   I W+  +  I  +            L +   ++ E  G 
Sbjct: 17  VSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGY 74

Query: 141 YYCVAQNGIGRGARRKIEVKV 161
           Y C  +      A   + ++ 
Sbjct: 75  YVCYPRGSKPEDANFYLYLRA 95

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 29/185 (15%), Positives = 49/185 (26%), Gaps = 40/185 (21%)

Query: 86  AKEGQSVQLEC-------HAEGHPIPTISWRRENNAILPN-----------------GQT 121
            +EG  V + C            P   + W R+                        G+ 
Sbjct: 12  VQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRF 71

Query: 122 IFTGS------TLQIPRITKEDRGAYYCVAQNGIGRG---ARRKIEVKVEFAPIVTVQST 172
              G       +L I     ED G+Y+   + G        + K+ ++V           
Sbjct: 72  RLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF 131

Query: 173 RIGQALHHDMDLDCHI----EAYPHPILYWAKDGEIVVNDEYHSISNF---GTSEGTTGS 225
                      L C +    EA P     W  +    ++ E    S        E    +
Sbjct: 132 LEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDHGTN 191

Query: 226 LQCKV 230
           L C++
Sbjct: 192 LTCQM 196

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 6/69 (8%)

Query: 87  KEGQSVQLECH----AEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYY 142
           + G+  +L C      E  P  T SW    NA+ P        S L +    ++      
Sbjct: 136 ESGRPTRLSCSLPGSCEAGPPLTFSWTG--NALSPLDPETTRSSELTLTPRPEDHGTNLT 193

Query: 143 CVAQNGIGR 151
           C  +    +
Sbjct: 194 CQMKRQGAQ 202

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 24/132 (18%), Positives = 36/132 (27%), Gaps = 4/132 (3%)

Query: 34  ECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPE--AQVDTPPVILNNSPQLSVAKEGQS 91
            C     P       R           +   +P    +    P       Q         
Sbjct: 458 GCLMSRDPYCGWDQGRCISIYSSERSVLQSINPAEPHKECPNPKPDKAPLQKVSLAPNSR 517

Query: 92  VQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS-TLQIPRITKEDRGAYYCVAQNGIG 150
             L C  E     T SWR + N          + +  L I  +T +  G Y+C AQ G  
Sbjct: 518 YYLSCPMES-RHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCEAQEGSY 576

Query: 151 RGARRKIEVKVE 162
               +  ++  E
Sbjct: 577 FREAQHWQLLPE 588

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 13/105 (12%), Positives = 35/105 (33%), Gaps = 27/105 (25%)

Query: 85  VAKEGQSVQLECH---AEGHPIPTISWRRE--------NNAILPNGQTIFTGS------- 126
             + G++  L C         +  + W +         N  +  + + +           
Sbjct: 5   KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64

Query: 127 --------TLQIPRITKEDRGAYYC-VAQNGIGRGARRKIEVKVE 162
                   +L I  +T +D G Y C +   G+    + ++++ ++
Sbjct: 65  GDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 84  SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG---STLQIPRITKEDRGA 140
           SV   G SV + C             +E +    + Q        +   IP +T++  G 
Sbjct: 14  SVISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGR 72

Query: 141 YYCVAQNGIG 150
           Y C  ++ +G
Sbjct: 73  YRCYYRSPVG 82

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 19/126 (15%), Positives = 35/126 (27%), Gaps = 8/126 (6%)

Query: 84  SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS---TLQIPRITKEDRGA 140
           SV   G SV + C             +E +    + Q            IP +T+   G 
Sbjct: 14  SVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGR 72

Query: 141 YYCVAQNGIGRGARR---KIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY 197
           Y C   +  G        ++ V   +                 ++ L C         + 
Sbjct: 73  YRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFI- 131

Query: 198 WAKDGE 203
             ++G+
Sbjct: 132 LTEEGD 137

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 20/128 (15%), Positives = 32/128 (25%), Gaps = 28/128 (21%)

Query: 80  SPQLSVAKEGQSVQLECH---AEGHPIPTISWRREN-----------------------N 113
                 A  G   +L C     +      + W R                          
Sbjct: 12  PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRG 71

Query: 114 AILPNGQTIFTGS-TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST 172
                 ++I  G   L+I  +   D G Y C  ++   +     +E+KVE          
Sbjct: 72  RTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPFYWINPGR 130

Query: 173 RIGQALHH 180
                 HH
Sbjct: 131 SRSHHHHH 138

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 23/100 (23%)

Query: 86  AKEGQSVQLECHA-EGHPIPTISWR-RENNAIL---PNGQTIF--------------TGS 126
           A  G +V L+ H     P   I+W   +N  IL    N                    G+
Sbjct: 15  AYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGA 74

Query: 127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPI 166
            L I  + KED+G YY             KI ++V F P+
Sbjct: 75  -LHISNVRKEDKGTYYMRVLRETENE--LKITLEV-FDPV 110

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 13/107 (12%), Positives = 26/107 (24%), Gaps = 1/107 (0%)

Query: 44  TISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI 103
            I    +      L     ++  +     P       PQ  V   G  +   C ++   +
Sbjct: 168 EIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVL 227

Query: 104 PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG 150
             +        I  +G+ +       I           +    N  G
Sbjct: 228 SALIGHTNCPLIHLDGENVAI-KIRNISVSASSGTNVVFTTEDNIFG 273

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 42/254 (16%), Positives = 72/254 (28%), Gaps = 28/254 (11%)

Query: 4   SPESQVDTPPVILNNST-----QLSV-AKEGQSVQLECHAEGHPIPT-ISWRRNFKRLGR 56
           S  S V T P +L +        ++V +    S  + C+       T +  +   +    
Sbjct: 163 SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTI 222

Query: 57  LHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISWRRE-NN 113
                        +  P V +       V     S  + C         P +      NN
Sbjct: 223 KPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNN 282

Query: 114 AILPNGQTIF----------TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE- 162
             +   QT              S L I          + C   N        +   K + 
Sbjct: 283 VEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKG 342

Query: 163 --FAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHPI-LYWAKDGEIVVNDEYHSISNFGT 218
              AP V V      +     + L C +    P  I + W  +G+  +N  Y +      
Sbjct: 343 SVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELN--YKNTEPVLD 400

Query: 219 SEGTTGSLQCKVPV 232
           S+G+   +  K+ V
Sbjct: 401 SDGSY-FMYSKLRV 413

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 39.0 bits (91), Expect = 4e-04
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 11/123 (8%)

Query: 84  SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYC 143
           S+    + V L C      +      + +++   +         L IP + +   G Y C
Sbjct: 17  SLVPLEKPVTLRCQGP-PGVDLYRLEKLSSSRYQDQAV------LFIPAMKRSLAGRYRC 69

Query: 144 VAQNGIGRGARRK-IEVKVEFAPIVTVQSTRIGQALH--HDMDLDCHIEAYPHPILYWAK 200
             QNG         +E+           S + G A+    D+ L C             K
Sbjct: 70  SYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFDQFA-LYK 128

Query: 201 DGE 203
           +G+
Sbjct: 129 EGD 131

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457

 Score = 39.5 bits (92), Expect = 6e-04
 Identities = 36/233 (15%), Positives = 71/233 (30%), Gaps = 22/233 (9%)

Query: 19  STQLSV-AKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVIL 77
           S+ ++V +    +    C+    P  T   ++   +        P       +  P V L
Sbjct: 193 SSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFL 252

Query: 78  NNSPQLSVAKEGQSVQLECHAEG--HPIPTISW-RRENNAILPNGQTIF----------T 124
                       ++ ++ C      H  P + +    +   + N +T             
Sbjct: 253 FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRV 312

Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE---FAPIVTVQSTRIGQALHHD 181
            S L +      +   Y C   N        K   K +     P V        +   + 
Sbjct: 313 VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ 372

Query: 182 MDLDCHIEAY-PHPI-LYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVPV 232
           + L C ++ + P  I + W  +G+   N  Y +      S+G+   L  K+ V
Sbjct: 373 VSLTCLVKGFYPSDIAVEWESNGQPENN--YKTTPPVLDSDGSF-FLYSKLTV 422

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 30/167 (17%), Positives = 47/167 (28%), Gaps = 44/167 (26%)

Query: 23  SVAKEGQSVQLECHA-----------EGHPIPTISWRRNFKRLGRLHLAIPYTSPE---- 67
           SV  +G  V L C             E    P I+     + + +    IP  + E    
Sbjct: 14  SVITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQ-ELVKKGQFPIPSITWEHTGR 72

Query: 68  ----------------AQVDTPPVILNNSPQLS-----VAKEGQSVQLECHAEGHPIPTI 106
                             ++         P LS     V   G +V L+C ++       
Sbjct: 73  YRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAF-DGF 131

Query: 107 SWRRENNAILP---NGQTIFTGS---TLQIPRITKEDRGAYYCVAQN 147
              +E     P   N Q    GS      +  ++   R  Y C A +
Sbjct: 132 ILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD 178

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A Length = 185

 Score = 38.2 bits (88), Expect = 8e-04
 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 10/136 (7%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITK-EDR 138
           SP   +   G SV + C         +         LP  + +  G+  ++  ++  ++ 
Sbjct: 5   SPSKVILPRGGSVLVTCSTSCDQPKLLGIE----TPLPKKELLLPGNNRKVYELSNVQED 60

Query: 139 GAYYCVAQNGIGRGARRKIEVKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEA-YPHPIL 196
               C +       +  K  + V + P  V +      Q +   + L C +E   P   L
Sbjct: 61  SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQL 119

Query: 197 --YWAKDGEIVVNDEY 210
                +  + +  +  
Sbjct: 120 TVVLLRGEKELKREPA 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.98
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.98
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.97
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.97
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.97
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.97
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.97
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.97
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.96
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.96
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.96
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.96
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.96
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.96
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.96
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.96
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.96
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.96
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.96
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.96
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.95
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.95
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.95
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.95
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.95
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.95
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.95
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.95
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.95
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.95
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.95
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.95
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.95
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.94
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.94
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.94
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.94
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.94
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.93
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.93
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.93
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.93
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.93
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.93
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.93
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.93
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.93
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.93
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.93
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.93
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.93
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.93
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.93
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.92
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.92
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.92
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.92
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.92
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.92
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.92
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.91
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.91
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.91
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.91
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.91
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.91
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.9
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.9
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.9
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.9
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.9
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.9
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.9
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.9
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.89
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.89
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.89
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.89
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.89
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.89
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.89
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.89
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.89
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.89
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.89
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.89
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.89
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.89
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.89
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.88
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.88
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.88
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.88
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.88
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.88
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.88
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.88
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.88
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.88
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.88
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.87
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.87
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.87
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.87
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.87
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.87
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.87
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.87
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.87
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.87
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.87
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.86
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.86
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.86
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.86
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.86
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.86
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.85
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.85
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.85
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.85
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.85
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.85
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.85
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.85
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.85
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.85
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.85
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.85
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.85
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.85
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.85
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.85
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.84
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.84
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.84
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.84
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.84
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.84
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.84
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.84
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.84
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.84
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.84
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.84
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.84
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.84
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.84
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.84
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.84
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.84
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.84
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.84
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.84
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.84
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.83
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.83
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.83
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.83
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.83
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.83
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.83
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.83
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.83
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.83
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.83
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.83
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.83
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.82
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.82
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.82
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.82
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.82
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.82
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.82
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.82
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.82
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.82
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.82
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.82
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.82
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.81
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.81
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.81
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.81
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.81
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.81
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.81
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.81
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.81
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.81
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.8
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.8
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.8
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.8
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.8
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.8
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.8
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.79
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.79
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.79
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.79
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.79
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.79
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.79
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.79
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.78
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.78
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.78
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.78
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.78
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.78
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.77
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.77
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.77
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.77
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.77
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.77
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.77
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.77
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.77
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.77
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.77
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.77
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.77
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.77
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.77
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.77
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.76
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.76
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.76
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.76
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.75
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.75
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.75
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.75
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.75
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.74
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.74
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.74
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.74
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.74
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.74
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.73
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.73
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.73
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.73
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.73
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.73
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.72
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.72
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.72
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.72
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.72
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.72
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.71
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.7
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.7
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.7
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.7
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.69
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.69
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.69
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.69
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.68
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.68
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.68
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.68
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.67
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.67
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.66
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.66
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.66
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.65
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.64
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.64
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.63
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.63
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.63
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.63
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.63
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.63
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.62
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.62
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.62
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.62
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.61
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.61
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.61
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.61
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.61
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.6
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.6
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.6
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.6
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.6
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.6
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.59
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.58
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.58
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.58
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.58
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.57
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.57
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.57
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.57
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.57
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.56
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.56
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.56
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.56
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.55
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.55
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.55
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.55
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.55
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.54
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.54
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.54
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.54
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.54
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.54
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.53
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.53
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.53
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.52
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.52
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.52
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.52
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.52
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.52
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.51
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.51
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.51
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.51
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.51
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.5
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.5
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.5
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.5
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.5
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.5
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.5
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.5
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.49
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.49
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.49
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.49
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.49
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.49
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.49
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.48
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.48
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.48
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.48
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.47
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.47
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.47
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.47
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.47
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.47
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.47
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.46
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.46
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.46
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.46
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.46
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.46
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.46
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.45
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.45
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.45
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.45
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.45
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.45
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.45
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.45
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.44
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.44
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.44
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.44
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.43
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.43
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.43
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.43
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.43
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.43
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.42
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.42
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.42
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.42
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.42
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.41
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.41
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.41
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.41
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.41
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.41
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.41
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.41
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.41
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.4
1he7_A	126	High affinity nerve growth factor receptor; transf	99.4
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.4
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.39
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.39
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.39
2ens_A	96	Advanced glycosylation END product-specific recept	99.39
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.39
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.38
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.38
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.38
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.38
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.38
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.38
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.38
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.37
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.37
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.37
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.37
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.37
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.37
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.36
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.36
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.36
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.36
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.36
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.35
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.35
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	99.35
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.35
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.34
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.34
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.34
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.33
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.33
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.33
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.33
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.33
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.33
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.33
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.33
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.32
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.31
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.31
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.31
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.3
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.3
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.3
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.3
2ens_A	96	Advanced glycosylation END product-specific recept	99.29
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.29
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.29
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.29
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.29
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.29
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.29
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.29
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.29
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.28
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.28
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.28
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.28
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.28
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.28
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.27
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.27
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	99.27
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.27
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.27
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.27
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.27
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.26
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.26
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.26
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.26
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.26
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.25
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.25
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.25
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.25
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.25
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.25
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.25
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.25

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=4.3e-34  Score=210.09  Aligned_cols=221  Identities=21%  Similarity=0.411  Sum_probs=181.3

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee---------------------------eeEEEEe
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---------------------------GRLHLAI   61 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~---------------------------~~~~~~~   61 (232)
                      +..||.|... +.++.+.+|++++|.|.+.+.|.+.+.|++++..+                           |.|.|..
T Consensus         2 ~~~pP~~~~~-p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   80 (284)
T 2rik_A            2 AMAPPFFDLK-PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA   80 (284)
T ss_dssp             CCCCCEEEEC-CCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CcCCCEEEcc-ccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEE
Confidence            3579999988 88999999999999999999899999999964332                           3566655


Q ss_pred             ee------ecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe----eCCeEEEC
Q psy15206         62 PY------TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGSTLQIP  131 (232)
Q Consensus        62 ~~------~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~----~~~~l~i~  131 (232)
                      ..      ..+.|.|..+|.+.........+..|+.+.|.|.+.+.|.+.+.|++++..+........    ....|.|.
T Consensus        81 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~  160 (284)
T 2rik_A           81 SNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMY  160 (284)
T ss_dssp             EETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEEC
T ss_pred             EECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEC
Confidence            22      166778888887766555556788999999999999999999999999988765544322    23579999


Q ss_pred             CCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe-
Q psy15206        132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY-  210 (232)
Q Consensus       132 ~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~-  210 (232)
                      ++..+|.|.|+|.+.+..+. ....+.+.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....+ 
T Consensus       161 ~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~  239 (284)
T 2rik_A          161 NLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKY  239 (284)
T ss_dssp             SCCGGGCEEEEEEEECSSCE-EEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTE
T ss_pred             CCCcccCEEEEEEEEcCCCc-eeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCE
Confidence            99999999999999998776 5677888898999887777777888999999999999999999999999998876544 


Q ss_pred             --------EEEEEeccccCCceEEEEecC
Q psy15206        211 --------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       211 --------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                              ..|.+.++...|+|.|+|.|.
T Consensus       240 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  268 (284)
T 2rik_A          240 KIMSENFLTSIHILNVDSADIGEYQCKAS  268 (284)
T ss_dssp             EEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEcCCEEEEEEcCCCcccCEEEEEEEE
Confidence                    356677788899999999974

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=3e-32  Score=218.22  Aligned_cols=219  Identities=21%  Similarity=0.416  Sum_probs=178.2

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee---------------------------eeEEEEeee
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---------------------------GRLHLAIPY   63 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~---------------------------~~~~~~~~~   63 (232)
                      .||.+... +.+..+.+|++++|.|.+.+.|++.++|+|++..+                           |.|+|....
T Consensus       196 ~pp~~~~~-p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N  274 (570)
T 3b43_A          196 VPPFFDLK-PVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN  274 (570)
T ss_dssp             CCCEEEEC-CCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEE
T ss_pred             CCCccccC-CceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEEC
Confidence            47888777 77888999999999999999999999999965432                           345555422


Q ss_pred             ------ecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe----eCCeEEECCC
Q psy15206         64 ------TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGSTLQIPRI  133 (232)
Q Consensus        64 ------~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~----~~~~l~i~~~  133 (232)
                            ....|.|..+|.+.........+.+|+.+.|.|.+.|.|.+.+.|++++..+........    ....|.|.++
T Consensus       275 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v  354 (570)
T 3b43_A          275 VAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNL  354 (570)
T ss_dssp             TTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESC
T ss_pred             CCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCC
Confidence                  156778888887765444445677899999999999999999999999998765544332    1346999999


Q ss_pred             CCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeE--
Q psy15206        134 TKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH--  211 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~--  211 (232)
                      ..+|.|.|+|.+.|..|. ......|.|..+|.+...+....+..|+++.|.|.+.|.|.|.+.|+|+|..+..+.++  
T Consensus       355 ~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~  433 (570)
T 3b43_A          355 SVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKI  433 (570)
T ss_dssp             CGGGCEEEEEEEEBTTBC-CEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEE
T ss_pred             CcccCEEEEEEEEeCCCE-EEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEE
Confidence            999999999999998887 55677888999999888888888889999999999999999999999999988765544  


Q ss_pred             -------EEEEeccccCCceEEEEecC
Q psy15206        212 -------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       212 -------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                             .|.+.++...|+|.|+|.|.
T Consensus       434 ~~~~~~~~L~i~~v~~~D~G~Y~C~A~  460 (570)
T 3b43_A          434 MSENFLTSIHILNVDSADIGEYQCKAS  460 (570)
T ss_dssp             EEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEcCCEEEEEECCCChhhCEEEEEEEE
Confidence                   45566788899999999974

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=5e-32  Score=216.96  Aligned_cols=224  Identities=20%  Similarity=0.413  Sum_probs=181.0

Q ss_pred             CCcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee---------------------------eeEE
Q psy15206          6 ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---------------------------GRLH   58 (232)
Q Consensus         6 ~~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~---------------------------~~~~   58 (232)
                      .+.|..+|.+.........+.+|+.+.|.|.+.+.|.+.+.|+|++..+                           |.|+
T Consensus       284 ~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~  363 (570)
T 3b43_A          284 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT  363 (570)
T ss_dssp             EECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             EEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEE
Confidence            4677889998876344566899999999999999999999999965332                           3555


Q ss_pred             EEeeee------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee--C--CeE
Q psy15206         59 LAIPYT------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--G--STL  128 (232)
Q Consensus        59 ~~~~~~------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~--~~l  128 (232)
                      |.....      ...|.|..+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+....  +  ..|
T Consensus       364 C~a~N~~g~~~~~~~l~V~~~P~~~~-~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L  442 (570)
T 3b43_A          364 CEAHNAAGSASSSTSLKVKEPPVFRK-KPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI  442 (570)
T ss_dssp             EEEEBTTBCCEEEEEECEECCCEECS-CCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEE
T ss_pred             EEEEeCCCEEEEEEEEEecCCCeeec-CCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEE
Confidence            554222      56778888887764 455667788999999999999999999999999887655444322  1  378


Q ss_pred             EECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec-C
Q psy15206        129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV-N  207 (232)
Q Consensus       129 ~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~-~  207 (232)
                      .|.++..+|.|.|.|.+.|..|. ......+.|..+|.+...+.+..+..|+.+.|.|.+.|.|.+.+.|+|+|..+. .
T Consensus       443 ~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~  521 (570)
T 3b43_A          443 HILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRE  521 (570)
T ss_dssp             EECSCCGGGCEEEEEEEECSSCE-EEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCC
T ss_pred             EECCCChhhCEEEEEEEEECCCe-EEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccC
Confidence            99999999999999999999887 556778888999999888888888899999999999999999999999986543 2


Q ss_pred             ---------CCeEEEEEeccccCCceEEEEecC
Q psy15206        208 ---------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       208 ---------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                               .....|.+.++...|+|.|.|.|.
T Consensus       522 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  554 (570)
T 3b43_A          522 SDNIWISYSENIATLQFSRAEPANAGKYTCQIK  554 (570)
T ss_dssp             TTTEEECCCSSEEEEEESSCCTTCCEEEEEEEE
T ss_pred             CCeEEEEECCCEEEEEECcCCHHHCEEEEEEEE
Confidence                     223567788888999999999874

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=1.3e-31  Score=198.82  Aligned_cols=219  Identities=21%  Similarity=0.397  Sum_probs=165.3

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE-----------------------------eeeeEEE
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK-----------------------------RLGRLHL   59 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~-----------------------------~~~~~~~   59 (232)
                      ...+|.|... +.+..+.+|++++|.|.+.+.|.+.+.|++++.                             +.|.|+|
T Consensus         3 ~~~~P~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C   81 (304)
T 2yd9_A            3 GEEPPRFIKE-PKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYEC   81 (304)
T ss_dssp             -CCCCEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred             CccCCeeeec-CCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence            4579999988 889999999999999999999999999999432                             2245666


Q ss_pred             Eeeee------cCceeecCC-------cEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC---cE-E
Q psy15206         60 AIPYT------SPEAQVDTP-------PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG---QT-I  122 (232)
Q Consensus        60 ~~~~~------~~~l~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~---~~-~  122 (232)
                      .....      .+.|.|..+       |.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....   +. .
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~-~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~  160 (304)
T 2yd9_A           82 VAQNSVGEITVHAKLTVLREDQLPSGFPNIDM-GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ  160 (304)
T ss_dssp             EEECSSCEECCEEEEEEECGGGCCTTCCEEEE-CCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE
T ss_pred             EEECCCCeEEEEEEEEEeccccCCCCCCeeec-CCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe
Confidence            55322      445555543       33333 4556678889999999999999999999999998764321   22 3


Q ss_pred             eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE---eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEe
Q psy15206        123 FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE---FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWA  199 (232)
Q Consensus       123 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~  199 (232)
                      ..++.|.|.++..+|.|.|+|.+.|..+........+.|.   .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+
T Consensus       161 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~  240 (304)
T 2yd9_A          161 LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWM  240 (304)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEE
T ss_pred             CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEE
Confidence            3456899999999999999999999876533332444443   5777777777777889999999999999999999999


Q ss_pred             eCCEEecCCC-----eEEEEEeccccCCceEEEEecC
Q psy15206        200 KDGEIVVNDE-----YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       200 ~~g~~~~~~~-----~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++|..+....     ...|.+.+.  .|+|.|+|.|.
T Consensus       241 ~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~  275 (304)
T 2yd9_A          241 QGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAM  275 (304)
T ss_dssp             ETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEE
T ss_pred             ECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEE
Confidence            9999886432     345555554  68999999974

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=4.3e-31  Score=194.67  Aligned_cols=218  Identities=22%  Similarity=0.388  Sum_probs=168.4

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCC-CCeEEEEe-CcEee-----------------------------eeEEEE
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHP-IPTISWRR-NFKRL-----------------------------GRLHLA   60 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p-~~~~~W~~-~~~~~-----------------------------~~~~~~   60 (232)
                      ||.|... |.+..+.+|++++|.|.+.+.+ .+.+.|++ ++..+                             |.|.|.
T Consensus         2 ~~~v~~~-p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (291)
T 1qz1_A            2 VLQVDIV-PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV   80 (291)
T ss_dssp             CCCEEEE-SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CcceEec-CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEE
Confidence            5677777 8888999999999999999876 68999998 43211                             355555


Q ss_pred             eeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--c-EEeeCCeEEE
Q psy15206         61 IPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--Q-TIFTGSTLQI  130 (232)
Q Consensus        61 ~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~-~~~~~~~l~i  130 (232)
                      ....       .+.|.+..+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  + ....++.|.|
T Consensus        81 ~~n~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i  159 (291)
T 1qz1_A           81 VTAEDGTQSEATVNVKIFQKLMFKN-APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI  159 (291)
T ss_dssp             EECTTSCEEEEEEEEEEECCSEEEE-CCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEE
T ss_pred             EEcCCCCeeEEEEEEEeeccccccC-CCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEE
Confidence            4221       45566666666554 4556778899999999999999989999999998764322  2 2334668999


Q ss_pred             CCCCCCCCeEEEEEeEeCC-CCceeeEEEEEEEeccEEEeccc--eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC
Q psy15206        131 PRITKEDRGAYYCVAQNGI-GRGARRKIEVKVEFAPIVTVQST--RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN  207 (232)
Q Consensus       131 ~~~~~~~~g~y~C~~~~~~-~~~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~  207 (232)
                      .++...|.|.|+|.+.+.. +......+.+.+..+|.+.....  ...+..|+.+.|.|.+.|.|.+.+.|+++|..+..
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~  239 (291)
T 1qz1_A          160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN  239 (291)
T ss_dssp             TTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred             ccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcC
Confidence            9999999999999999864 33344667778888888776543  44667899999999999999999999999988765


Q ss_pred             CC-----------eEEEEEeccccCCceEEEEecC
Q psy15206        208 DE-----------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       208 ~~-----------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..           ...|.+.++..+|+|.|+|.|.
T Consensus       240 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  274 (291)
T 1qz1_A          240 EEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAE  274 (291)
T ss_dssp             C--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEE
Confidence            43           2367788888899999999873

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.4e-30  Score=200.26  Aligned_cols=223  Identities=26%  Similarity=0.513  Sum_probs=176.8

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe---------------------------eeeEEE
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR---------------------------LGRLHL   59 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~---------------------------~~~~~~   59 (232)
                      +.+..+|.+... +.+..+.+|++++|.|.+.+.|.+.+.|++++..                           .|.|.|
T Consensus       116 l~v~~p~~~~~~-~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  194 (403)
T 3laf_A          116 VMVAGPLRFLSQ-TESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRC  194 (403)
T ss_dssp             EEECCCCEECSC-CCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             EEecCCCccccC-CCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEE
Confidence            445668888776 7788999999999999999989999999995432                           247777


Q ss_pred             Eeeee-------cCceeecCCcE-----EecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc--EEeeC
Q psy15206         60 AIPYT-------SPEAQVDTPPV-----ILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTG  125 (232)
Q Consensus        60 ~~~~~-------~~~l~v~~~p~-----~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~  125 (232)
                      .....       ...+.+...|.     .....+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....  ....+
T Consensus       195 ~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~  274 (403)
T 3laf_A          195 SARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGG  274 (403)
T ss_dssp             EEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETT
T ss_pred             EEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCc
Confidence            76332       34455544432     122245556778999999999999999999999999987654322  23345


Q ss_pred             CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEe
Q psy15206        126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIV  205 (232)
Q Consensus       126 ~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~  205 (232)
                      +.|.|.++..+|.|.|+|.+.|..+. ....+.+.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+
T Consensus       275 ~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~  353 (403)
T 3laf_A          275 SNLLISNVTDDDSGTYTCVVTYKNEN-ISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV  353 (403)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEEC
T ss_pred             cEEEEeCCCHHHCEEEEEEEEcCCCc-eEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEEC
Confidence            78999999999999999999998776 66778888989999888888888889999999999999999999999999987


Q ss_pred             cCCCeE------EEEEeccccCCceEEEEecC
Q psy15206        206 VNDEYH------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       206 ~~~~~~------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ....++      .+.+..+..+|+|.|+|.|.
T Consensus       354 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  385 (403)
T 3laf_A          354 IPSDYFQIVGGSNLRILGVVKSDEGFYQCVAE  385 (403)
T ss_dssp             CCSSSEEEETTTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCcEEEecCccEEEeccccccCEEEEEEEE
Confidence            654433      46667788899999999874

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.98  E-value=2e-30  Score=198.48  Aligned_cols=221  Identities=17%  Similarity=0.279  Sum_probs=171.4

Q ss_pred             cccCCCeeecCCCcceEeecCCeEEEEEEecCCCC---CeEEEEeCcEee------------------------------
Q psy15206          8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPI---PTISWRRNFKRL------------------------------   54 (232)
Q Consensus         8 ~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~---~~~~W~~~~~~~------------------------------   54 (232)
                      .+..+|.+... +.+..+.+|++++|.|.+.+.+.   +.+.|++++...                              
T Consensus        99 ~v~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~  177 (388)
T 2v5m_A           99 RAVVAQYYEAD-VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGY  177 (388)
T ss_dssp             EEECCCCCCCB-CCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGG
T ss_pred             EEccccccccC-ccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccC
Confidence            34557777766 67788999999999999987543   789999954321                              


Q ss_pred             eeEEEEeeee----------cCceeecCC-----cEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeee----
Q psy15206         55 GRLHLAIPYT----------SPEAQVDTP-----PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI----  115 (232)
Q Consensus        55 ~~~~~~~~~~----------~~~l~v~~~-----p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~----  115 (232)
                      |.|+|.....          ...|.+..+     |...........+.+|+.+.|.|.+.|.|.+.+.|++++...    
T Consensus       178 G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~  257 (388)
T 2v5m_A          178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQ  257 (388)
T ss_dssp             CCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEE
T ss_pred             eeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccc
Confidence            6788876432          124555443     222222223456778999999999999999999999975332    


Q ss_pred             --CCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC
Q psy15206        116 --LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH  193 (232)
Q Consensus       116 --~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  193 (232)
                        ....+.....+.|.|.++..+|.|.|+|.+.|..|. ....+.+.|..+|.+...+....+..|+.+.|.|.+.|.|.
T Consensus       258 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~  336 (388)
T 2v5m_A          258 AVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI  336 (388)
T ss_dssp             ECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECC
T ss_pred             cccccCceecccCEEEECcCCHHHCeEEEEEEecCCCc-eeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccC
Confidence              223344455778999999999999999999998887 56778888988888888888888899999999999999999


Q ss_pred             CeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        194 PILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       194 ~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.+.|+|+|..+.... ..|.+.++...|+|.|+|.|.
T Consensus       337 p~i~W~~~g~~i~~~~-~~L~i~~v~~~d~G~Y~C~a~  373 (388)
T 2v5m_A          337 KTVSWMKDGKAIGHSE-SVLRIESVKKEDKGMYQCFVR  373 (388)
T ss_dssp             CEEEEEETTEECSCCS-SEEEESSCCGGGCEEEEEEEE
T ss_pred             CeEEEEECCEECccCC-CEEEEecCChhhCEEEEEEEE
Confidence            9999999999887543 467888888999999999874

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.98  E-value=1.6e-30  Score=191.65  Aligned_cols=219  Identities=18%  Similarity=0.350  Sum_probs=164.1

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEe-CcEe---------------------------eeeEEEEe
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRR-NFKR---------------------------LGRLHLAI   61 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~-~~~~---------------------------~~~~~~~~   61 (232)
                      ..+|.++.. +.++.+.+|++++|.|.+.+.|. .+.|++ ++..                           .|.|.|..
T Consensus         2 ~~~p~v~~~-~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   79 (291)
T 2wim_A            2 MALLQVTIS-LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA   79 (291)
T ss_dssp             -CCCEEEES-CSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCceEEEe-ccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEE
Confidence            358899988 88899999999999999998765 999998 3221                           14666655


Q ss_pred             eee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC--CCcE-EeeCCeEEEC
Q psy15206         62 PYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP--NGQT-IFTGSTLQIP  131 (232)
Q Consensus        62 ~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~--~~~~-~~~~~~l~i~  131 (232)
                      ...       .+.|.+..++.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ..+. ...++.|.|.
T Consensus        80 ~n~~g~~~~~~~~l~v~~~~~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~  158 (291)
T 2wim_A           80 TDAKGQTQEATVVLEIYQKLTFRE-VVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL  158 (291)
T ss_dssp             ECSSSCEEEEEEEEEEECCCBCCS-CCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEET
T ss_pred             ecccCceEEEEEEEEecCCcceEe-CCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEE
Confidence            322       44556655554433 44556788999999999999989999999999877643  2222 2345689999


Q ss_pred             CCCCCCCeEEEEEeEeCCCC-ceeeEEEEEEEeccEEEeccc--eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC
Q psy15206        132 RITKEDRGAYYCVAQNGIGR-GARRKIEVKVEFAPIVTVQST--RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND  208 (232)
Q Consensus       132 ~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~  208 (232)
                      ++...|.|.|+|.+.+..+. .....+.+.+..+|.+...+.  ...+..|+.+.|.|.+.|.|.+.+.|+++|..+...
T Consensus       159 ~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~  238 (291)
T 2wim_A          159 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEEN  238 (291)
T ss_dssp             TCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCT
T ss_pred             ecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCC
Confidence            99999999999999987643 334566777778887655443  345678999999999999999999999999987644


Q ss_pred             C-------eEEEEEeccccCCceEEEEecC
Q psy15206        209 E-------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ~-------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .       ...|.+.++...|+|.|+|.|.
T Consensus       239 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  268 (291)
T 2wim_A          239 EKYILKGSNTELTVRNIINSDGGPYVCRAT  268 (291)
T ss_dssp             TTEEECSTTCEEEEESCCSTTCEEEEEEEE
T ss_pred             ccEEEcCCccEEEEeeCCcccCEEEEEEEE
Confidence            3       2457777888899999999974

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.97  E-value=1.2e-30  Score=201.52  Aligned_cols=216  Identities=14%  Similarity=0.193  Sum_probs=157.4

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe-----------------------eeeEEEEeee
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR-----------------------LGRLHLAIPY   63 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~-----------------------~~~~~~~~~~   63 (232)
                      +.|..+|.+...  .+..+..|+.++|.|.+.|.|.+.|+|++++..                       .|.|.|....
T Consensus       135 l~V~~~p~~~~~--~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N  212 (423)
T 3qs7_E          135 VSIRNTLLYTLR--RPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARN  212 (423)
T ss_dssp             EEEC-----CEE--EEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEEC
T ss_pred             EEEecCcccccc--CCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEc
Confidence            345556666433  334566789999999999999999999995321                       2347777632


Q ss_pred             e-------cCceeecCCcEEecCCCCceEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCc----------EEeeC
Q psy15206         64 T-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQ----------TIFTG  125 (232)
Q Consensus        64 ~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~----------~~~~~  125 (232)
                      .       .+.|.|..+|..   .+....+.+|+.+.|.|.+.| .|.+.+.|++++..+.....          .....
T Consensus       213 ~~G~~~~~~~~l~V~~~p~~---~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~  289 (423)
T 3qs7_E          213 ELGRECTRLFTIDLNQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRI  289 (423)
T ss_dssp             SSCEEEEECEEEESSSCCCS---STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEE
T ss_pred             CCCCcceeeEEEEEecCCcc---CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEE
Confidence            2       345555554432   334567889999999999998 66789999999987643211          12223


Q ss_pred             CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEecc--ceeeeeccCeEEEEEEeecCCCCeEEEeeCCE
Q psy15206        126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS--TRIGQALHHDMDLDCHIEAYPHPILYWAKDGE  203 (232)
Q Consensus       126 ~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~  203 (232)
                      +.|.|.++..+|+|.|+|.+.|.    ....+.|.|..+|.+...+  ....+..|+++.|.|.+.|.|.|.|.|+|+|.
T Consensus       290 ~~L~I~~v~~~D~G~Y~C~A~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~  365 (423)
T 3qs7_E          290 LFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRK  365 (423)
T ss_dssp             EEEEESSCCTTTCEEEEEEETTE----EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTE
T ss_pred             EEEEEeecCHHHCEEEEEEEecC----CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCE
Confidence            47999999999999999999887    5677888888888877655  34567789999999999999999999999999


Q ss_pred             EecCC-----CeEEEEEeccccCCceEEEEecC
Q psy15206        204 IVVND-----EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       204 ~~~~~-----~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+..+     ..+.+.......+|+|.|+|.|.
T Consensus       366 ~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~  398 (423)
T 3qs7_E          366 SFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAE  398 (423)
T ss_dssp             EEECBCCBCSSSSEEEEECCCTTCCSCEEEEEE
T ss_pred             ECCCccccccCCcEEEEEecccccCEEEEEEEE
Confidence            88654     35566445566799999999984

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.97  E-value=7.3e-30  Score=196.27  Aligned_cols=224  Identities=25%  Similarity=0.430  Sum_probs=172.8

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEe-cCCCCCeEEEEeCcE-------------------------e-eeeEEE
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFK-------------------------R-LGRLHL   59 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~-~~~p~~~~~W~~~~~-------------------------~-~~~~~~   59 (232)
                      +.|..+|.+......+..+.+|++++|.|.+ .+.|.+.+.|++++.                         + .|.|.|
T Consensus       110 l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C  189 (404)
T 3p3y_A          110 LQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC  189 (404)
T ss_dssp             EEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEE
T ss_pred             EEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEE
Confidence            4556667665543566889999999999999 678899999999431                         1 257888


Q ss_pred             Eeeee---------cCceeecCC-------cEEecCC--CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE
Q psy15206         60 AIPYT---------SPEAQVDTP-------PVILNNS--PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT  121 (232)
Q Consensus        60 ~~~~~---------~~~l~v~~~-------p~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~  121 (232)
                      .....         .+.+.+...       |.+....  .....+.+|+.+.|.|.+.+.|.+.+.|++++..+......
T Consensus       190 ~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~  269 (404)
T 3p3y_A          190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAK  269 (404)
T ss_dssp             EEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEE
T ss_pred             EEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCccc
Confidence            77432         233444322       2211110  12345778999999999999999999999999887544432


Q ss_pred             -EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEee
Q psy15206        122 -IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK  200 (232)
Q Consensus       122 -~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  200 (232)
                       ...++.|.|.++..+|.|.|+|.+.|..+. ....+.+.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++
T Consensus       270 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~  348 (404)
T 3p3y_A          270 FENFNKALRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV  348 (404)
T ss_dssp             EEGGGTEEEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEE
T ss_pred             ccccCceEEEccCCHhHCEEEEEEEEeCCCc-EEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEE
Confidence             333678999999999999999999998877 667888999999998888888888999999999999999999999999


Q ss_pred             CCEEecCCC--------eEEEEEeccccCCceEEEEecC
Q psy15206        201 DGEIVVNDE--------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       201 ~g~~~~~~~--------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|..+....        ...|.+.++..+|+|.|+|.|.
T Consensus       349 ~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  387 (404)
T 3p3y_A          349 NGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTS  387 (404)
T ss_dssp             TTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEE
T ss_pred             CCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEE
Confidence            999876432        1257778889999999999874

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.97  E-value=8.2e-30  Score=194.97  Aligned_cols=219  Identities=24%  Similarity=0.399  Sum_probs=163.0

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEec-CCCCCeEEEEeCcEe-------------------------eeeEEEEeeeec
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKR-------------------------LGRLHLAIPYTS   65 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~-~~p~~~~~W~~~~~~-------------------------~~~~~~~~~~~~   65 (232)
                      .|.+...+...+.+.+|+.++|.|... +.+.+.+.|++++..                         .|.|+|......
T Consensus       101 ~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (384)
T 3kld_A          101 LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV  180 (384)
T ss_dssp             ECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             ccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEeccc
Confidence            333333324567899999999999875 356789999985432                         256777664321


Q ss_pred             Cc---------eee-------cCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe-eeCCCCcEEeeCCeE
Q psy15206         66 PE---------AQV-------DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN-AILPNGQTIFTGSTL  128 (232)
Q Consensus        66 ~~---------l~v-------~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~l  128 (232)
                      ..         +.+       ..+|.+....+....+.+|+.+.|.|.+.|.|.|.+.|++++. .+.........++.|
T Consensus       181 ~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L  260 (384)
T 3kld_A          181 TNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGIL  260 (384)
T ss_dssp             TTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEE
T ss_pred             ccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEE
Confidence            11         111       1122222223455677889999999999999999999999654 333322223345689


Q ss_pred             EECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC
Q psy15206        129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND  208 (232)
Q Consensus       129 ~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~  208 (232)
                      .|.++..+|.|.|+|.+.|..|. ......+.|..+|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+...
T Consensus       261 ~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~  339 (384)
T 3kld_A          261 EIPNFQQEDAGSYECVAENSRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR  339 (384)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCB
T ss_pred             EECCCChhhCEEEEEEEEcCCCe-EEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCC
Confidence            99999999999999999998887 55667888888898888788888899999999999999999999999999988654


Q ss_pred             CeE-----EEEEeccccCCceEEEEecC
Q psy15206        209 EYH-----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ~~~-----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .++     .+.+.++..+|+|.|+|.|.
T Consensus       340 ~~~~~~~~~L~i~~v~~~D~G~Y~C~A~  367 (384)
T 3kld_A          340 DRIQIEQGTLNITIVNLSDAGMYQCVAE  367 (384)
T ss_dssp             TTEEEETTEEEESSCCGGGCEEEEEEEE
T ss_pred             ccEEEeCCEEEEeecChhhCEEEEEEEE
Confidence            443     45666778899999999984

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.97  E-value=1e-28  Score=179.29  Aligned_cols=211  Identities=17%  Similarity=0.235  Sum_probs=162.6

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCCCC-eEEEEeCcEee-----------------eeEEEEeeee----cCcee
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRL-----------------GRLHLAIPYT----SPEAQ   69 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~-~~~W~~~~~~~-----------------~~~~~~~~~~----~~~l~   69 (232)
                      +|.|+.. |.+..+.+|++++|.|.+.+.|.+ .+.|++++..+                 |.|.|.....    .+.|.
T Consensus         1 kP~i~~~-p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~   79 (262)
T 3rjd_A            1 KAVITLQ-PPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLE   79 (262)
T ss_dssp             CCEEEES-SCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEESSSCCCCCEEEE
T ss_pred             CCeEecC-CCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccCCeEEEecCCcccCeEEEEEEecCCccccEEEE
Confidence            5889888 888899999999999999988776 99999966543                 4677766322    45666


Q ss_pred             ecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         70 VDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        70 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      |..++....  +....+.+|+.+.|.|.+ .+.+.+.+.|++++..+.    .....+.|.|.++..+|.|.|+|.+.+.
T Consensus        80 v~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~n~  153 (262)
T 3rjd_A           80 IHRGWLLLQ--VSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFK----FFHWNSNLTILKTNISHNGTYHCSGMGK  153 (262)
T ss_dssp             EECSSEEEE--ESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEE----EEEECCCEEESSCCGGGCEEEEEEEESS
T ss_pred             EeccceEec--CCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccc----ccCCCCeEEEEECChhhCEEEEEEEeCC
Confidence            666655443  334567789999999999 667778999999988763    2233568999999999999999999987


Q ss_pred             CCCceeeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCC-Ce----EEEeeCCEEecC-CCeEEEEEeccc
Q psy15206        149 IGRGARRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPH-PI----LYWAKDGEIVVN-DEYHSISNFGTS  219 (232)
Q Consensus       149 ~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~----~~W~~~g~~~~~-~~~~~~~~~~~~  219 (232)
                      .+. ....+.+.|..   +|.+...+ ...+..|+.+.|.|.+.+.|. +.    +.|+++|..+.. .....+.+.++.
T Consensus       154 ~~~-~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~~~~~L~i~~v~  231 (262)
T 3rjd_A          154 HRY-TSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTAR  231 (262)
T ss_dssp             SEE-EEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEEESCCEEEESSCC
T ss_pred             CCc-cccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecccCCCceEEEEEec
Confidence            643 55666777764   45555544 556788999999999999876 43    789999987763 344567788889


Q ss_pred             cCCceEEEEecC
Q psy15206        220 EGTTGSLQCKVP  231 (232)
Q Consensus       220 ~~d~g~Y~C~~~  231 (232)
                      .+|+|.|+|.|.
T Consensus       232 ~~d~G~Y~C~a~  243 (262)
T 3rjd_A          232 REDSGLYWCEAA  243 (262)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             hhhCeEEEEEEE
Confidence            999999999974

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.97  E-value=3.6e-29  Score=191.17  Aligned_cols=221  Identities=22%  Similarity=0.331  Sum_probs=170.1

Q ss_pred             cccCCCeeecCCCcceEeecCCeEEEEEEec-CCCCCeEEEEeCcEe---------------------------eeeEEE
Q psy15206          8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKR---------------------------LGRLHL   59 (232)
Q Consensus         8 ~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~-~~p~~~~~W~~~~~~---------------------------~~~~~~   59 (232)
                      .+..+|.+...++.+..+.+|++++|.|.+. +.|.+.+.|++++..                           .|.|+|
T Consensus        96 ~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  175 (382)
T 1cs6_A           96 RFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSC  175 (382)
T ss_dssp             EEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEE
T ss_pred             EeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEE
Confidence            3334454444435678899999999999965 568899999995321                           247777


Q ss_pred             Eeeee-----------cCceeec------CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEE
Q psy15206         60 AIPYT-----------SPEAQVD------TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI  122 (232)
Q Consensus        60 ~~~~~-----------~~~l~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~  122 (232)
                      .....           ...|.+.      .+|.+....+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ...
T Consensus       176 ~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~--~~~  253 (382)
T 1cs6_A          176 FATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--KWL  253 (382)
T ss_dssp             EEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC--CCS
T ss_pred             EEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc--EEe
Confidence            66322           1223321      2344443345567788999999999999999999999998876532  222


Q ss_pred             eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCC
Q psy15206        123 FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG  202 (232)
Q Consensus       123 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g  202 (232)
                      .....|.|.++..+|.|.|+|.+.|..|. ....+.+.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|
T Consensus       254 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g  332 (382)
T 1cs6_A          254 SSEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDG  332 (382)
T ss_dssp             BSSSEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETT
T ss_pred             cCCcEEEEccCChhhCEEEEEEEEcCCCe-EEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECC
Confidence            34568999999999999999999998876 66778888988998888888888899999999999999999999999999


Q ss_pred             EEecCCCeE-----EEEEeccccCCceEEEEecC
Q psy15206        203 EIVVNDEYH-----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       203 ~~~~~~~~~-----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+....++     .|.+.++..+|+|.|+|.|.
T Consensus       333 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  366 (382)
T 1cs6_A          333 QPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAE  366 (382)
T ss_dssp             EECCCCSSEEEETTEEEESSCCGGGCEEEEEEEE
T ss_pred             EECCCCceEEEECCEEEECcCCcccCEEEEEEEE
Confidence            988766544     46777888899999999974

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=8.6e-29  Score=182.18  Aligned_cols=216  Identities=17%  Similarity=0.202  Sum_probs=164.0

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE----------------------eeeeEEEEeee-----
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK----------------------RLGRLHLAIPY-----   63 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~----------------------~~~~~~~~~~~-----   63 (232)
                      .+|.|... +.+..+.+|++++|.|.+.+    .+.|++++.                      +.|.|.|....     
T Consensus         3 p~p~i~~~-~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~   77 (289)
T 3ejj_X            3 PAPVIEPS-GPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAG   77 (289)
T ss_dssp             -CCEEESC-SSEEEECTTCCEEEEEECSS----CCEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC-----
T ss_pred             CCcEecCC-CceEEECCCCCEEEEEEeCC----cEEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCCcc
Confidence            46777766 78889999999999999987    499998421                      22578887522     


Q ss_pred             -ecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCe-EEEEe-CCeeeCCCCcEE-eeCCeEEECCCCCCCCe
Q psy15206         64 -TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT-ISWRR-ENNAILPNGQTI-FTGSTLQIPRITKEDRG  139 (232)
Q Consensus        64 -~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~-~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g  139 (232)
                       ..+.|.|..++......+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+....... ..++.|.|.++..+|.|
T Consensus        78 ~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  157 (289)
T 3ejj_X           78 STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSN  157 (289)
T ss_dssp             CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCE
T ss_pred             eeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCE
Confidence             255667766554333345667888999999999998866665 99986 454444433333 34568999999999999


Q ss_pred             EEEEEeEeCCCCceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeec-CCCCeEEEeeCCEEecCCC-----
Q psy15206        140 AYYCVAQNGIGRGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHPILYWAKDGEIVVNDE-----  209 (232)
Q Consensus       140 ~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~~~~-----  209 (232)
                      .|+|.+.+.........+.+.|.    .+|.+...+....+..|+.+.|.|.+.+ .|.+.+.|+++|..+....     
T Consensus       158 ~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~  237 (289)
T 3ejj_X          158 TYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQ  237 (289)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEEC
T ss_pred             EEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccc
Confidence            99999995433335566777777    6788888887777788999999999998 7889999999998775421     


Q ss_pred             ------eEEEEEeccccCCceEEEEecC
Q psy15206        210 ------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 ------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                            ...|.+.++..+|+|.|+|.|.
T Consensus       238 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (289)
T 3ejj_X          238 DNYYKKVRALSLNAVDFQDAGIYSCVAS  265 (289)
T ss_dssp             SSSEEEEEEEEESSCCSSSCEEEEEEEE
T ss_pred             cceEEeeEEEEEEeecccCCEEEEEEEE
Confidence                  3477888889999999999974

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=2.7e-29  Score=185.08  Aligned_cols=215  Identities=15%  Similarity=0.209  Sum_probs=165.3

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe--------------------eeeEEEEee---eecC
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR--------------------LGRLHLAIP---YTSP   66 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~--------------------~~~~~~~~~---~~~~   66 (232)
                      ..+|.|... +.+..+.+|++++|.|.+.+    .+.|++++..                    .|.|+|...   ...+
T Consensus        10 ~~~P~i~~~-~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ng~~~~~   84 (290)
T 2o26_X           10 PSPPSIHPA-QSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSI   84 (290)
T ss_dssp             --CCEESSC-SSEEEEETTSCEEEEEECTT----EEEEEEECSSSCEEEECSSEEEETTCCGGGCEEEEEEESSSCEEEE
T ss_pred             CCCCEEeCC-CCeEEEcCCCcEEEEECCCC----cEEEecCCcceeeecCCCceEEEeccCHHhCeEEEEEeeCCccEEE
Confidence            568999976 88899999999999999988    8999995432                    257777663   2355


Q ss_pred             ceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCC-CeEEEE-eCCeeeCCCCcEEe-eCCeEEECCCCCCCCe-EEE
Q psy15206         67 EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI-PTISWR-RENNAILPNGQTIF-TGSTLQIPRITKEDRG-AYY  142 (232)
Q Consensus        67 ~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~-~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g-~y~  142 (232)
                      .|.|..+|... .......+.+|+.+.|.|.+.+ |. +.+.|+ +++..+....+... ....|.|.++..+|.| .|+
T Consensus        85 ~l~V~~~~~~~-~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~  162 (290)
T 2o26_X           85 YVFVRDPAKLF-LVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVR  162 (290)
T ss_dssp             EEEEECSSCCB-CCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEE
T ss_pred             EEEEeCCCccc-ccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEE
Confidence            67777666555 3555677889999999999986 77 889995 66766554433332 3568999999999999 999


Q ss_pred             EEeEeCCCCceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecCCCCe-EEEeeCCEEe----c-------
Q psy15206        143 CVAQNGIGRGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIV----V-------  206 (232)
Q Consensus       143 C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~g~~~----~-------  206 (232)
                      |.+.+..+...+..+.+.|.    .+|.+...+....+..|+.+.|.|.+.|.|.+. +.|+++|..+    .       
T Consensus       163 C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~  242 (290)
T 2o26_X          163 CAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWH  242 (290)
T ss_dssp             EEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEE
T ss_pred             EEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeecccccc
Confidence            99999754433445677776    678888777777888999999999999999996 9999998652    1       


Q ss_pred             -----CCCeEEEEEeccccCCceEEEEecC
Q psy15206        207 -----NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 -----~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                           ......|.+.++...|+|.|+|.|.
T Consensus       243 ~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~  272 (290)
T 2o26_X          243 RGDFNYERQETLTISSARVDDSGVFMCYAN  272 (290)
T ss_dssp             EETTEEEEEEEEEESSCCSSSCEEEEEEEE
T ss_pred             cCceeeEEEEEEEEcCCCcccCeEEEEEEe
Confidence                 1124567788889999999999984

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.97  E-value=5.5e-29  Score=197.56  Aligned_cols=222  Identities=18%  Similarity=0.235  Sum_probs=172.4

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEe-CcEe------------------------ee-eEEEE
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRR-NFKR------------------------LG-RLHLA   60 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~-~~~~------------------------~~-~~~~~   60 (232)
                      +.|..+|.+... +.+..+.+|++++|.|.+.+.+.+.+.|++ ++..                        .| .|+|.
T Consensus       109 l~V~~p~~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~  187 (524)
T 2ec8_A          109 VFVRDPAKLFLV-DRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCS  187 (524)
T ss_dssp             EECCCSSCSBCC-CCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEE
T ss_pred             EEECCCCccccc-ccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEE
Confidence            456667777755 778889999999999999987778999988 3321                        25 78887


Q ss_pred             eeee-------cCceeec----CCcEEecCCCCceEeecCCcEEEEeeeccCCCCe-EEEEeCCeee--CCCCc------
Q psy15206         61 IPYT-------SPEAQVD----TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT-ISWRRENNAI--LPNGQ------  120 (232)
Q Consensus        61 ~~~~-------~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~--~~~~~------  120 (232)
                      ....       .+.|.|.    .+|.+.. .+....+.+|+.+.|.|.+.+.|.+. +.|++++..+  .....      
T Consensus       188 a~n~~~~~~s~~~~l~V~~~~~~~p~i~~-~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~  266 (524)
T 2ec8_A          188 VDQEGKSVLSEKFILKVRPAFKAVPVVSV-SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGD  266 (524)
T ss_dssp             EC----CCCCCCEECCEECCCCSCCEEEC-SCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSS
T ss_pred             EEECCceEEEEEEEEEEEeCCCCCCcEEe-cCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccC
Confidence            6322       4455554    4555543 55666788999999999999988876 9999998773  21111      


Q ss_pred             -EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccc---eeeeeccCeEEEEEEeecCCCCe-
Q psy15206        121 -TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQST---RIGQALHHDMDLDCHIEAYPHPI-  195 (232)
Q Consensus       121 -~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~~g~~~~l~C~~~~~p~~~-  195 (232)
                       .....+.|.|.++..+|.|.|+|.+.|..|. ....+.+.|..+|.+...+.   ...+..|+.+.|.|.+.|.|.+. 
T Consensus       267 ~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~  345 (524)
T 2ec8_A          267 FNYERQATLTISSARVNDSGVFMCYANNTFGS-ANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEH  345 (524)
T ss_dssp             SCEEEEEEEEESSCCTTTCEEEEEEEECSSCE-EEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCE
T ss_pred             CccceEEEEEECCCCHHHCEEEEEEEEecCCc-eEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcE
Confidence             1223468999999999999999999998877 45588889998888876553   57788999999999999999999 


Q ss_pred             EEEeeCCEEecCCC--------------eEEEEEeccccCCceEEEEecC
Q psy15206        196 LYWAKDGEIVVNDE--------------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       196 ~~W~~~g~~~~~~~--------------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|+|+|..+....              ...|.+.++...|+|.|+|.|.
T Consensus       346 v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  395 (524)
T 2ec8_A          346 QQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVS  395 (524)
T ss_dssp             EEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEE
Confidence            99999998765432              3578888899999999999874

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.97  E-value=3.2e-28  Score=187.10  Aligned_cols=219  Identities=23%  Similarity=0.465  Sum_probs=167.6

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecC-CCCCeEEEEeCcE-------------------------------eeeeEE
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFK-------------------------------RLGRLH   58 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~-~p~~~~~W~~~~~-------------------------------~~~~~~   58 (232)
                      ....+... |.++.+.+|++++|.|.+.+ .|.+.+.|+|++.                               +.|.|+
T Consensus        20 ~~~~~~~~-P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~   98 (403)
T 3laf_A           20 RSLHFVSE-PSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQ   98 (403)
T ss_dssp             CSSEEEEC-CCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEE
T ss_pred             eeEEEEeC-CCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEE
Confidence            34555555 88999999999999999986 6788999999542                               235778


Q ss_pred             EEeeee--------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC---CCc-EEeeCC
Q psy15206         59 LAIPYT--------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP---NGQ-TIFTGS  126 (232)
Q Consensus        59 ~~~~~~--------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~---~~~-~~~~~~  126 (232)
                      |.....        .+.+.+..++.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..   ... .....+
T Consensus        99 C~~~~~~~~~~~s~~~~l~v~~p~~~~~-~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  177 (403)
T 3laf_A           99 CEASLGDSGSIISRTAKVMVAGPLRFLS-QTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG  177 (403)
T ss_dssp             EEEECGGGCEEECCCEEEEECCCCEECS-CCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTS
T ss_pred             EEEEeCCCccEEEEEEEEEecCCCcccc-CCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCc
Confidence            877421        44566666665543 55667888999999999999988889999999887632   222 223456


Q ss_pred             eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEecc------EEEeccceeeeeccCeEEEEEEeecCCCCeEEEee
Q psy15206        127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP------IVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK  200 (232)
Q Consensus       127 ~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  200 (232)
                      .|.|.++..+|.|.|+|.+.+..+........+.+...|      .+...+....+..|+.+.|.|.+.+.|.+.+.|++
T Consensus       178 ~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  257 (403)
T 3laf_A          178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR  257 (403)
T ss_dssp             CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEE
T ss_pred             eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEE
Confidence            899999999999999999999766544455667666544      23445666778899999999999999999999999


Q ss_pred             CCEEecCCC-e------EEEEEeccccCCceEEEEecC
Q psy15206        201 DGEIVVNDE-Y------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       201 ~g~~~~~~~-~------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|..+.... .      ..+.+.++..+|+|.|+|.|.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  295 (403)
T 3laf_A          258 GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVT  295 (403)
T ss_dssp             TTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEE
Confidence            998875332 2      247777888899999999874

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.97  E-value=1.5e-28  Score=199.37  Aligned_cols=220  Identities=19%  Similarity=0.303  Sum_probs=168.3

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee----------------eeEEEEeeee------
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------------GRLHLAIPYT------   64 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~----------------~~~~~~~~~~------   64 (232)
                      +.|..+|.+....+.+..+.+|+.++|.|.+.+.|.+.+.|++++..+                |.|+|.....      
T Consensus       375 l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  454 (642)
T 1e07_A          375 LNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSR  454 (642)
T ss_pred             EEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCceEEEccCChhhCeEEEEEEEcCCCCCcc
Confidence            445555544322266778999999999999999999999999976433                5777776432      


Q ss_pred             --cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCCCCC
Q psy15206         65 --SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKED  137 (232)
Q Consensus        65 --~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~  137 (232)
                        .+.+.+..   +|.+.  ......+.+|+.+.|.|.+.+ +.+.+.|++++..+....+...  .++.|.|.++...|
T Consensus       455 s~~~~v~v~~~~~~p~i~--~~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d  531 (642)
T 1e07_A          455 TTVKTITVSAELPKPSIS--SNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRND  531 (642)
T ss_pred             cceEEEEEeccCCCceEe--cCCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhc
Confidence              13344432   23322  233456778999999999984 7789999999988765554433  24689999999999


Q ss_pred             CeEEEEEeEeCCCCceeeEEEEEEEeccE-EEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEe
Q psy15206        138 RGAYYCVAQNGIGRGARRKIEVKVEFAPI-VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNF  216 (232)
Q Consensus       138 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~  216 (232)
                      .|.|+|.+.|..|...+..+.|.|..+|. +...+.+..+..|+.+.|.|.+.|.|.+.+.|+|+|..+..+.  .|.+.
T Consensus       532 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~~--~L~i~  609 (642)
T 1e07_A          532 ARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQ--VLFIA  609 (642)
T ss_pred             CceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccCc--eEEEC
Confidence            99999999998876555567888876554 5556777788899999999999999999999999999887654  56666


Q ss_pred             ccccCCceEEEEecC
Q psy15206        217 GTSEGTTGSLQCKVP  231 (232)
Q Consensus       217 ~~~~~d~g~Y~C~~~  231 (232)
                      ++...|+|.|+|.|.
T Consensus       610 ~~~~~d~G~Y~C~a~  624 (642)
T 1e07_A          610 KITPNNNGTYACFVS  624 (642)
T ss_pred             cccccCCeEEEEEEE
Confidence            788899999999984

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=189.36  Aligned_cols=219  Identities=16%  Similarity=0.223  Sum_probs=151.6

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCC-CCCeEEEEeCcEee-------------------------eeEEEEee
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGH-PIPTISWRRNFKRL-------------------------GRLHLAIP   62 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~-p~~~~~W~~~~~~~-------------------------~~~~~~~~   62 (232)
                      ...+|.|..  +.+..+.+|++++|.|.+.+. |.+.+.|++++..+                         |.|.|...
T Consensus         4 ~~~~P~~~~--~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   81 (317)
T 2y25_A            4 PFTGPHFVE--YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK   81 (317)
T ss_dssp             SSSCCEEEE--EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEE
T ss_pred             ccCCCcEee--eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEE
Confidence            456899984  456889999999999999986 77899999965433                         34555442


Q ss_pred             ee------cCceeecCCcEEecCCCCceEeecCCcEEEEeeecc----------CCCCeEEEEeCCeeeCCCCcEEee--
Q psy15206         63 YT------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG----------HPIPTISWRRENNAILPNGQTIFT--  124 (232)
Q Consensus        63 ~~------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~----------~~~~~~~W~~~~~~~~~~~~~~~~--  124 (232)
                      ..      .+.|.+..++.... .+....+..|+.+.|.|.+.+          .|.+.+.|++++..+....+....  
T Consensus        82 n~~g~~~~~~~l~v~~~~~~~~-~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~  160 (317)
T 2y25_A           82 DDRGKDKSRLKLVDEAFKELMM-EVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT  160 (317)
T ss_dssp             SSSCEEEEEECCSTHHHHHHHH-HHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEEC
T ss_pred             CCCCcEEEEEEEEEecCccccc-cCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEecc
Confidence            21      22222222211110 011122334566666666655          678899999999887655444332  


Q ss_pred             C--CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE--------------------eccEEEe-ccceeeeeccCe
Q psy15206        125 G--STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE--------------------FAPIVTV-QSTRIGQALHHD  181 (232)
Q Consensus       125 ~--~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~--------------------~~p~~~~-~~~~~~~~~g~~  181 (232)
                      .  ..|.|.++..+|.|.|+|.+.|..+. ....+.+.+.                    ..|.+.. .+....+..|+.
T Consensus       161 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~  239 (317)
T 2y25_A          161 GEQIWLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKA  239 (317)
T ss_dssp             SSEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSB
T ss_pred             CCEEEEEECcCCcccCeeEEEEEEeCCce-EEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCE
Confidence            1  24999999999999999999997765 3344444432                    1244433 355667889999


Q ss_pred             EEEEEEeecCCCCeEEEeeCCEEecCCC----------eEEEEEeccccCCceEEEEecC
Q psy15206        182 MDLDCHIEAYPHPILYWAKDGEIVVNDE----------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       182 ~~l~C~~~~~p~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|.|.+.|.|.+.+.|+++|..+..+.          ...|.+.++...|+|.|+|.|.
T Consensus       240 ~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  299 (317)
T 2y25_A          240 LNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK  299 (317)
T ss_dssp             BCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEE
T ss_pred             EEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEE
Confidence            9999999999999999999998776433          3477778888999999999874

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.96  E-value=8e-29  Score=196.04  Aligned_cols=204  Identities=15%  Similarity=0.199  Sum_probs=155.5

Q ss_pred             cceEeecCCeEEEEEEecCCCCCeEEEEeCcEe-----------------------eeeEEEEeeee-------cCceee
Q psy15206         21 QLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR-----------------------LGRLHLAIPYT-------SPEAQV   70 (232)
Q Consensus        21 ~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~-----------------------~~~~~~~~~~~-------~~~l~v   70 (232)
                      .+.....|+.++|.|.+.|.|.+.++|++++..                       .|.|.|.....       .+.|.|
T Consensus       147 ~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V  226 (527)
T 3qs9_E          147 RPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDL  226 (527)
T ss_dssp             EEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEES
T ss_pred             CCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEE
Confidence            344556788899999999999999999984322                       24577766321       355666


Q ss_pred             cCCcEEecCCCCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcE----------EeeCCeEEECCCCCCCCe
Q psy15206         71 DTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQT----------IFTGSTLQIPRITKEDRG  139 (232)
Q Consensus        71 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~~~g  139 (232)
                      ..+|..   .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+......          ......|.|.++..+|+|
T Consensus       227 ~~~p~~---~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG  303 (527)
T 3qs9_E          227 NQTPQT---TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG  303 (527)
T ss_dssp             SSCCCC---SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCE
T ss_pred             eccCcc---CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCe
Confidence            655543   34567788999999999996 8889999999999876432211          222346999999999999


Q ss_pred             EEEEEeEeCCCCceeeEEEEEEEeccEEEecc--ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC-----eEE
Q psy15206        140 AYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS--TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE-----YHS  212 (232)
Q Consensus       140 ~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~-----~~~  212 (232)
                      .|+|.+.|.    ....+.+.|..+|.+...+  ....+..|+.+.|.|.+.|.|.|.+.|+|+|..+....     ...
T Consensus       304 ~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~  379 (527)
T 3qs9_E          304 YYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYS  379 (527)
T ss_dssp             EEEEEETTE----EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSE
T ss_pred             EEEEEEEeC----CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcE
Confidence            999999886    4567788888888776554  34567789999999999999999999999999886443     457


Q ss_pred             EEEeccccCCceEEEEecC
Q psy15206        213 ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       213 ~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.+.++...|+|.|+|.|.
T Consensus       380 L~I~~v~~~D~G~YtC~A~  398 (527)
T 3qs9_E          380 ISKFCNHKHQPGEYIFHAE  398 (527)
T ss_dssp             EEEECCCTTCCSCEEEEEE
T ss_pred             EEEecCCcccCEEEEEEEE
Confidence            8888899999999999974

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.96  E-value=1.5e-28  Score=188.93  Aligned_cols=224  Identities=21%  Similarity=0.387  Sum_probs=165.4

Q ss_pred             cccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe-------------------------------eee
Q psy15206          8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR-------------------------------LGR   56 (232)
Q Consensus         8 ~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~-------------------------------~~~   56 (232)
                      .+..+|.|...++.+..+.+|++++|.|.+.+.|.+.+.|+|++..                               .|.
T Consensus        12 ~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~   91 (404)
T 3p3y_A           12 ELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGE   91 (404)
T ss_dssp             -CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEE
T ss_pred             hccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEE
Confidence            4567999997657788999999999999999999999999995431                               357


Q ss_pred             EEEEeee-------ecCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCC-CCcE-EeeCC
Q psy15206         57 LHLAIPY-------TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILP-NGQT-IFTGS  126 (232)
Q Consensus        57 ~~~~~~~-------~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~-~~~~-~~~~~  126 (232)
                      |+|....       ..+.|.|..+|...........+.+|+.+.|.|.+ .+.|.+.+.|++++..... ..+. ...++
T Consensus        92 Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~  171 (404)
T 3p3y_A           92 YQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG  171 (404)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTS
T ss_pred             EEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCC
Confidence            8887632       24566776666554434445678899999999998 7788889999998755432 2222 22467


Q ss_pred             eEEECCCCCCC-CeEEEEEeEeCCCCcee--eEEEEEEEe-------ccEEEec---cceeeeeccCeEEEEEEeecCCC
Q psy15206        127 TLQIPRITKED-RGAYYCVAQNGIGRGAR--RKIEVKVEF-------APIVTVQ---STRIGQALHHDMDLDCHIEAYPH  193 (232)
Q Consensus       127 ~l~i~~~~~~~-~g~y~C~~~~~~~~~~~--~~~~l~v~~-------~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p~  193 (232)
                      .|.|.++...| .|.|+|.+.+..+....  ..+.+.+..       +|.+...   +....+..|+.+.|.|.+.|.|.
T Consensus       172 ~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~  251 (404)
T 3p3y_A          172 DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT  251 (404)
T ss_dssp             CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSC
T ss_pred             cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCC
Confidence            89999999999 59999999987664322  223444432       2222211   12355778999999999999999


Q ss_pred             CeEEEeeCCEEecCCC------eEEEEEeccccCCceEEEEecC
Q psy15206        194 PILYWAKDGEIVVNDE------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       194 ~~~~W~~~g~~~~~~~------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.+.|+++|..+....      ...+.+.++...|+|.|+|.|.
T Consensus       252 ~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  295 (404)
T 3p3y_A          252 PDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLAS  295 (404)
T ss_dssp             CEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEE
T ss_pred             CcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEE
Confidence            9999999998776443      2357778888999999999874

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.96  E-value=1.7e-28  Score=185.31  Aligned_cols=212  Identities=18%  Similarity=0.261  Sum_probs=133.4

Q ss_pred             CcceEeecCCeEEEEEEecCCCC-----------CeEEEEeCcE--------------------------------eeee
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPI-----------PTISWRRNFK--------------------------------RLGR   56 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~-----------~~~~W~~~~~--------------------------------~~~~   56 (232)
                      ..++.+.+|++++|.|.+.+.|.           +.+.|++++.                                +.|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            67788999999999999997654           8999999652                                1146


Q ss_pred             EEEEeeee------cCceeecCCcEEec---CCCCceEeecCCcEEEEeee-----ccCCCCeEEEEeCCeeeCCCCcEE
Q psy15206         57 LHLAIPYT------SPEAQVDTPPVILN---NSPQLSVAKEGQSVQLECHA-----EGHPIPTISWRRENNAILPNGQTI  122 (232)
Q Consensus        57 ~~~~~~~~------~~~l~v~~~p~~~~---~~~~~~~~~~g~~~~l~C~~-----~~~~~~~~~W~~~~~~~~~~~~~~  122 (232)
                      |.|.....      .+.|.|..++....   ..+....+..|+.+.|.|.+     .+.|.+.+.|++++..+.......
T Consensus        94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~  173 (349)
T 4dep_C           94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI  173 (349)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEE
T ss_pred             EEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcccee
Confidence            66665322      34466655432211   11234466789999999985     667889999999999876555555


Q ss_pred             eeCCeEEECCCCCCCCeEEEEEeEeCC-CCc--eeeEEEEEEEe------ccEEEecccee--eeeccCeEEEEEEee--
Q psy15206        123 FTGSTLQIPRITKEDRGAYYCVAQNGI-GRG--ARRKIEVKVEF------APIVTVQSTRI--GQALHHDMDLDCHIE--  189 (232)
Q Consensus       123 ~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~--~~~~~~l~v~~------~p~~~~~~~~~--~~~~g~~~~l~C~~~--  189 (232)
                      ..+..|.|.++..+|.|.|+|.+.+.. +..  ....+.+.|..      +|.+...+...  .+..|+.+.|.|.+.  
T Consensus       174 ~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~  253 (349)
T 4dep_C          174 PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFS  253 (349)
T ss_dssp             EETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEEC
T ss_pred             ecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEc
Confidence            666789999999999999999999975 432  25666676765      45554433322  677899999999998  


Q ss_pred             --cCCCCeEEEeeCCEEecC----------------CC---eEEEEEeccccCCc-eEEEEecC
Q psy15206        190 --AYPHPILYWAKDGEIVVN----------------DE---YHSISNFGTSEGTT-GSLQCKVP  231 (232)
Q Consensus       190 --~~p~~~~~W~~~g~~~~~----------------~~---~~~~~~~~~~~~d~-g~Y~C~~~  231 (232)
                        |.|.+.+.|+++|..+..                ..   ...|.+.++..+|+ |.|+|.|.
T Consensus       254 ~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~  317 (349)
T 4dep_C          254 FLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR  317 (349)
T ss_dssp             CCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEE
T ss_pred             cCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEE
Confidence              578899999999987654                21   12266778888999 99999973

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=5.2e-28  Score=185.46  Aligned_cols=209  Identities=19%  Similarity=0.399  Sum_probs=159.6

Q ss_pred             CcceEeecCCeEEEEEEe-cCCCCCeEEEEeCc---E----------------------------eee---eEEEEeeee
Q psy15206         20 TQLSVAKEGQSVQLECHA-EGHPIPTISWRRNF---K----------------------------RLG---RLHLAIPYT   64 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~-~~~p~~~~~W~~~~---~----------------------------~~~---~~~~~~~~~   64 (232)
                      +.+..+.+|++++|.|.+ .+.|.+.+.|++++   .                            +.|   .|.|.....
T Consensus       107 ~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~  186 (395)
T 1bih_A          107 THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNA  186 (395)
T ss_dssp             EEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             CcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEec
Confidence            456778899999999996 67889999999964   0                            114   677766332


Q ss_pred             cCc---------eeec----------CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEe
Q psy15206         65 SPE---------AQVD----------TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIF  123 (232)
Q Consensus        65 ~~~---------l~v~----------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~  123 (232)
                      ...         +.+.          .+|.+   .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  +...
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~  263 (395)
T 1bih_A          187 AVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY---VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITR  263 (395)
T ss_dssp             TCSSCEEEEEEEECCCBCCSSCCCCCCEEEE---ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEES
T ss_pred             ccceEEEeeeEEecccccccccccCCcCcee---cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEE
Confidence            110         0000          11112   2345678899999999999999999999999998775432  2221


Q ss_pred             ----eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccce-eeeeccCeEEEEEEeecCCCCeEEE
Q psy15206        124 ----TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTR-IGQALHHDMDLDCHIEAYPHPILYW  198 (232)
Q Consensus       124 ----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~~~W  198 (232)
                          ....|.|.++..+|.|.|+|.+.|..|......+.|.|..+|.+...+.. ..+..|+.+.|.|.+.|.|.+.+.|
T Consensus       264 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W  343 (395)
T 1bih_A          264 HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW  343 (395)
T ss_dssp             CSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEE
T ss_pred             EecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEE
Confidence                12379999999999999999999988875555889999999998887776 6788999999999999999999999


Q ss_pred             eeCCEEecCCC----eEEEEEeccccCCceEEEEecC
Q psy15206        199 AKDGEIVVNDE----YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       199 ~~~g~~~~~~~----~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +++|..+..+.    .-.|.+.++..+|+|.|+|.|.
T Consensus       344 ~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  380 (395)
T 1bih_A          344 SHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRAT  380 (395)
T ss_dssp             EETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEE
T ss_pred             EECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEE
Confidence            99998876431    1167778888999999999974

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=2.6e-28  Score=179.84  Aligned_cols=216  Identities=19%  Similarity=0.239  Sum_probs=161.4

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCc----------------------EeeeeEEEEeee----
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNF----------------------KRLGRLHLAIPY----   63 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~----------------------~~~~~~~~~~~~----   63 (232)
                      ..+|.|... +.+..+.+|++++|.|.+.+.    +.|+++.                      .+.|.|.|....    
T Consensus         2 ~~~P~i~~~-~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~   76 (292)
T 4dkd_C            2 GSIPVIEPS-VPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG   76 (292)
T ss_dssp             --CCEEESC-CSSCEECTTCCEEEEEECSSC----CCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC----
T ss_pred             CCCceecCC-CCeEEEcCCCcEEEEEcCCCc----eEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCCCC
Confidence            468999988 788899999999999999883    8898632                      122467776532    


Q ss_pred             --ecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCC--CeEEEEeCC-eeeCCCCcEEe-eCCeEEECCCCCCC
Q psy15206         64 --TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI--PTISWRREN-NAILPNGQTIF-TGSTLQIPRITKED  137 (232)
Q Consensus        64 --~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~-~~~~~~~~~~~-~~~~l~i~~~~~~~  137 (232)
                        ..+.|.|..++......+....+.+|+.+.|.|.+.+ +.  +.+.|++++ ..+........ ....|.|.++..+|
T Consensus        77 ~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  155 (292)
T 4dkd_C           77 GSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQ  155 (292)
T ss_dssp             CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGG
T ss_pred             cceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHH
Confidence              1556677666653333455677889999999999987 44  679999984 33333333322 24569999999999


Q ss_pred             CeEEEEEeEeCCCCceeeEEEEEEEe----ccEEEeccceeeeeccCeEEEEEEeecCCC-CeEEEeeCCEEecCC----
Q psy15206        138 RGAYYCVAQNGIGRGARRKIEVKVEF----APIVTVQSTRIGQALHHDMDLDCHIEAYPH-PILYWAKDGEIVVND----  208 (232)
Q Consensus       138 ~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~g~~~~~~----  208 (232)
                      .|.|+|.+.+..+......+.+.|..    +|.+...+....+..|+.+.|.|.+.+.|. +.+.|++++..+...    
T Consensus       156 ~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~  235 (292)
T 4dkd_C          156 SQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSD  235 (292)
T ss_dssp             CSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEE
T ss_pred             CeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccce
Confidence            99999999987665455577888886    888888887777789999999999998775 468999988755421    


Q ss_pred             ---C----eEEEEEeccccCCceEEEEecC
Q psy15206        209 ---E----YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ---~----~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                         .    ...|.+.++..+|+|.|+|.|.
T Consensus       236 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  265 (292)
T 4dkd_C          236 FHNNRYQKVLTLNLDQVDFQHAGNYSCVAS  265 (292)
T ss_dssp             EETTEEEEEEEEEESSCCTTSCEEEEEEEE
T ss_pred             eccceeeeEEEEEECccChhcCeEEEEEEe
Confidence               1    2378888889999999999973

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.96  E-value=1.8e-27  Score=193.18  Aligned_cols=208  Identities=21%  Similarity=0.344  Sum_probs=160.2

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee----------------eeEEEEeeee--------cCceeecCCc-
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------------GRLHLAIPYT--------SPEAQVDTPP-   74 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~----------------~~~~~~~~~~--------~~~l~v~~~p-   74 (232)
                      +.+..+.+|++++|.|.+.+.|.+.+.|++++..+                |.|.|.....        .+.|.|..++ 
T Consensus       210 ~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~  289 (642)
T 1e07_A          210 PLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPP  289 (642)
T ss_pred             cCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcccCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCC
Confidence            66778899999999999999999999999965433                5788876432        2345554321 


Q ss_pred             -EEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         75 -VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        75 -~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                       ..+. ......+..|+.+.|.|.+.+.+ +.+.|+++|..+....+...  .++.|.|.++..+|.|.|.|.+.|..+.
T Consensus       290 ~p~i~-~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~  367 (642)
T 1e07_A          290 KPFIT-SNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSV  367 (642)
T ss_pred             CCEEE-cCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCC
Confidence             2222 22334555688899999998875 68999999987755444433  3568999999999999999999998876


Q ss_pred             ceeeEEEEEEEeccEE-EeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEec
Q psy15206        152 GARRKIEVKVEFAPIV-TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       152 ~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      ..+..+.+.|..+|.. ...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....  .+.+.++...|+|.|+|.|
T Consensus       368 ~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~--~L~i~~~~~~d~G~Y~C~a  445 (642)
T 1e07_A          368 DHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ--ELFISNITEKNSGLYTCQA  445 (642)
T ss_pred             cceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCc--eEEEccCChhhCeEEEEEE
Confidence            5566678888876643 445666678899999999999999999999999999887654  4566677889999999997


Q ss_pred             C
Q psy15206        231 P  231 (232)
Q Consensus       231 ~  231 (232)
                      .
T Consensus       446 ~  446 (642)
T 1e07_A          446 N  446 (642)
T ss_pred             E
Confidence            4

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.96  E-value=3.2e-28  Score=187.94  Aligned_cols=212  Identities=13%  Similarity=0.132  Sum_probs=138.3

Q ss_pred             eeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------------eeEEEEeeee---
Q psy15206         14 VILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------------GRLHLAIPYT---   64 (232)
Q Consensus        14 ~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------------~~~~~~~~~~---   64 (232)
                      .++.. +.++.|.+|++++|.|.+.+.|.+.|.|++++..+                          |.|.|.....   
T Consensus        50 ~~~~~-~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~  128 (423)
T 3qs7_E           50 GTVYE-AAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN  128 (423)
T ss_dssp             -------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CE
T ss_pred             cceec-cccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCc
Confidence            34444 56889999999999999999999999999865321                          4566655222   


Q ss_pred             ---cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECC-CCCCCCeE
Q psy15206         65 ---SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR-ITKEDRGA  140 (232)
Q Consensus        65 ---~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~-~~~~~~g~  140 (232)
                         .+.|.|..+|....  ........|+.+.|.|.+.|.|.|.+.|++++........ ........... +...|.|.
T Consensus       129 ~~~~~~l~V~~~p~~~~--~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~-~~~~~~~~~~~~l~~~d~G~  205 (423)
T 3qs7_E          129 YTILFTVSIRNTLLYTL--RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKE-ESPAVVKKEEKVLHELFGTD  205 (423)
T ss_dssp             EEEEEEEEEC-----CE--EEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCSSC
T ss_pred             EEEEEEEEEecCccccc--cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccc-cccccccccceEEecccCeE
Confidence               45566654443321  1112344677889999999999999999998765421100 00000011111 15789999


Q ss_pred             EEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeec-CCCCeEEEeeCCEEecCCC----------
Q psy15206        141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHPILYWAKDGEIVVNDE----------  209 (232)
Q Consensus       141 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~~~~----------  209 (232)
                      |.|.+.|..|......+.+.|..+|.+  .+....+..|+.+.|.|.+.| .|.+.+.|+|+|..+....          
T Consensus       206 Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~  283 (423)
T 3qs7_E          206 IRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTN  283 (423)
T ss_dssp             EEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETT
T ss_pred             EEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCC
Confidence            999999988864444466666655543  445667889999999999998 6778999999987664321          


Q ss_pred             -----eEEEEEeccccCCceEEEEecC
Q psy15206        210 -----YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 -----~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                           ...|.+.++...|+|.|+|.|.
T Consensus       284 ~~~~~~~~L~I~~v~~~D~G~Y~C~A~  310 (423)
T 3qs7_E          284 RTMIRILFAFVSSVARNDTGYYTCSSS  310 (423)
T ss_dssp             TEEEEEEEEEESSCCTTTCEEEEEEET
T ss_pred             ceeEEEEEEEEeecCHHHCEEEEEEEe
Confidence                 1257788889999999999985

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.96  E-value=8.2e-28  Score=190.83  Aligned_cols=220  Identities=14%  Similarity=0.237  Sum_probs=167.5

Q ss_pred             CCcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe-------------------eeeEEEEeee---
Q psy15206          6 ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR-------------------LGRLHLAIPY---   63 (232)
Q Consensus         6 ~~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~-------------------~~~~~~~~~~---   63 (232)
                      .+.|..||.|... +.+..+.+|++++|.|.+.+    .+.|++++..                   .|.|.|....   
T Consensus        30 ~l~v~~pP~i~~~-~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ng~~  104 (524)
T 2ec8_A           30 SPGEPSPPSIHPG-KSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLS  104 (524)
T ss_dssp             ---CCCCCEEESC-CSEEECCTTSCEEEEEECTT----EEEEEEESSSCCEEECSSEEEESSCCSTTCEEEEEEETTSCE
T ss_pred             EcCCCCCCccCCC-CceEEEeCCCeEEEEEeCCc----eEEEcCCCccccccCccceEEEcccchhhCEEEEEeecCCcc
Confidence            3567889999877 77889999999999999987    9999996432                   2477776622   


Q ss_pred             ecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEe-CCeeeCCCCcEEe-eCCeEEECCCCCCCCe-E
Q psy15206         64 TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRR-ENNAILPNGQTIF-TGSTLQIPRITKEDRG-A  140 (232)
Q Consensus        64 ~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g-~  140 (232)
                      ..+.|.|..++... ..+....+.+|+.+.|.|.+.+.+.+.+.|++ ++..+....+... ..+.|.|.++...|.| .
T Consensus       105 ~~~~l~V~~p~~~~-~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~  183 (524)
T 2ec8_A          105 NSIYVFVRDPAKLF-LVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLC  183 (524)
T ss_dssp             EEEEEECCCSSCSB-CCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCE
T ss_pred             eEEEEEECCCCccc-ccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCce
Confidence            35566666655544 35556678899999999999886668999998 6666554444333 4678999999999999 9


Q ss_pred             EEEEeEeCCCCceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecCCCCe-EEEeeCCEEe--c-------
Q psy15206        141 YYCVAQNGIGRGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIV--V-------  206 (232)
Q Consensus       141 y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~g~~~--~-------  206 (232)
                      |+|.+.+..+...+..+.+.|.    .+|.+...+....+..|+.+.|.|.+.+.|.+. +.|+++|..+  .       
T Consensus       184 Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~  263 (524)
T 2ec8_A          184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWH  263 (524)
T ss_dssp             EEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEE
T ss_pred             EEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCcccccccccc
Confidence            9999998766544556777776    678888888888899999999999999999886 9999998762  2       


Q ss_pred             -----CCCeEEEEEeccccCCceEEEEecC
Q psy15206        207 -----NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 -----~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                           ......|.+.++...|+|.|+|.|.
T Consensus       264 ~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~  293 (524)
T 2ec8_A          264 HGDFNYERQATLTISSARVNDSGVFMCYAN  293 (524)
T ss_dssp             CSSSCEEEEEEEEESSCCTTTCEEEEEEEE
T ss_pred             ccCCccceEEEEEECCCCHHHCEEEEEEEE
Confidence                 1124577788889999999999874

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.96  E-value=3.2e-27  Score=180.63  Aligned_cols=221  Identities=18%  Similarity=0.352  Sum_probs=154.4

Q ss_pred             cCCCeeecCCCcceEe---ecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------------eeEEEE
Q psy15206         10 DTPPVILNNSTQLSVA---KEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------------GRLHLA   60 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~---~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------------~~~~~~   60 (232)
                      ..+|.|+.. |.+..+   .+|++++|.|.+.|.|.+.|+|+|++..+                          |.|+|.
T Consensus         3 ~~~P~f~~~-P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~   81 (384)
T 3kld_A            3 GSGPVFVQE-PSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI   81 (384)
T ss_dssp             CEEEEEEEC-CCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEE
T ss_pred             CCCCEEEeC-CcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEE
Confidence            347889888 777766   68999999999999999999999965432                          355555


Q ss_pred             eeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEE
Q psy15206         61 IPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIF--TGSTLQI  130 (232)
Q Consensus        61 ~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i  130 (232)
                      ....       ...+.+...+.+.........+.+|+.+.|.|... +.+.+.+.|++++..+....+...  ..+.|.|
T Consensus        82 A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I  161 (384)
T 3kld_A           82 ATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYI  161 (384)
T ss_dssp             EEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEE
T ss_pred             EEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEE
Confidence            5322       22333332222222223446778899999999764 356678999999987654444332  3467999


Q ss_pred             CCCCCCCCeEEEEEeEeCCCCcee--eEEEEEEE-------eccEEEe-ccceeeeeccCeEEEEEEeecCCCCeEEEee
Q psy15206        131 PRITKEDRGAYYCVAQNGIGRGAR--RKIEVKVE-------FAPIVTV-QSTRIGQALHHDMDLDCHIEAYPHPILYWAK  200 (232)
Q Consensus       131 ~~~~~~~~g~y~C~~~~~~~~~~~--~~~~l~v~-------~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~  200 (232)
                      .++..+|.|.|+|.+.|..+....  ....+.+.       ..|.+.. .+....+..|+.+.|.|.+.|.|.|.+.|+|
T Consensus       162 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k  241 (384)
T 3kld_A          162 AKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRR  241 (384)
T ss_dssp             SSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEE
T ss_pred             eecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEe
Confidence            999999999999999997654211  11111111       2344433 3556678899999999999999999999999


Q ss_pred             C-CEEecCC-----CeEEEEEeccccCCceEEEEecC
Q psy15206        201 D-GEIVVND-----EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       201 ~-g~~~~~~-----~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      + +..+...     ....|.+.++..+|+|.|+|.|.
T Consensus       242 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  278 (384)
T 3kld_A          242 ADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAE  278 (384)
T ss_dssp             TTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCccccccceecCCCcEEEECCCChhhCEEEEEEEE
Confidence            5 4344322     23468888899999999999873

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.96  E-value=2.2e-27  Score=176.77  Aligned_cols=212  Identities=17%  Similarity=0.288  Sum_probs=153.0

Q ss_pred             CcceEeecCCeEEEEEEecCCC-CCeEEEEeCcEe---------------------------eeeEEEEeeee------c
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP-IPTISWRRNFKR---------------------------LGRLHLAIPYT------S   65 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p-~~~~~W~~~~~~---------------------------~~~~~~~~~~~------~   65 (232)
                      ...+.+.+|++++|.|.+.+.+ .+.+.|+|++..                           .|.|.|.....      .
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (315)
T 1itb_B           12 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   91 (315)
T ss_dssp             CCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEE
T ss_pred             ceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEE
Confidence            4567899999999999999876 789999996531                           13566655322      1


Q ss_pred             Cceeec-CCcEEecC--CCCceEeecCCcEEEEeee------ccCCCCeEEEEeCCeeeCCC-CcEEeeCCeEEECCCCC
Q psy15206         66 PEAQVD-TPPVILNN--SPQLSVAKEGQSVQLECHA------EGHPIPTISWRRENNAILPN-GQTIFTGSTLQIPRITK  135 (232)
Q Consensus        66 ~~l~v~-~~p~~~~~--~~~~~~~~~g~~~~l~C~~------~~~~~~~~~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~  135 (232)
                      +.+.+. .+|.+...  ......+..|+.+.|.|.+      .+.|.+.+.|++++..+... .+.....+.|.|.++..
T Consensus        92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~  171 (315)
T 1itb_B           92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAE  171 (315)
T ss_dssp             CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCG
T ss_pred             EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEecee
Confidence            122211 11211100  0112457789999999998      78888999999999887542 34455677999999999


Q ss_pred             CCCeEEEEEeE-eCCCCce--eeEEEEEEE-----eccEEEeccce-eeeeccCeEEEEEEeecCCCCeEEEeeCCEEec
Q psy15206        136 EDRGAYYCVAQ-NGIGRGA--RRKIEVKVE-----FAPIVTVQSTR-IGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV  206 (232)
Q Consensus       136 ~~~g~y~C~~~-~~~~~~~--~~~~~l~v~-----~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~  206 (232)
                      +|.|.|+|.+. +..+...  ...+.+.+.     .+|.+...+.. ..+..|+.+.|.|.+.|.|.|.+.|+++|..+.
T Consensus       172 ~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~  251 (315)
T 1itb_B          172 KHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVID  251 (315)
T ss_dssp             GGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECC
T ss_pred             hhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECC
Confidence            99999999999 6666532  233344343     46666554443 467889999999999999999999999999876


Q ss_pred             CCC---------------------eEEEEEeccccCC-ceEEEEecC
Q psy15206        207 NDE---------------------YHSISNFGTSEGT-TGSLQCKVP  231 (232)
Q Consensus       207 ~~~---------------------~~~~~~~~~~~~d-~g~Y~C~~~  231 (232)
                      ...                     ...|.+.++..+| +|.|+|.|.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~  298 (315)
T 1itb_B          252 EDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAK  298 (315)
T ss_dssp             TTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEE
T ss_pred             cccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEe
Confidence            533                     1267788888899 999999973

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.96  E-value=7.8e-28  Score=200.07  Aligned_cols=222  Identities=22%  Similarity=0.357  Sum_probs=169.8

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe-------------------------eeeEEEEe
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR-------------------------LGRLHLAI   61 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~-------------------------~~~~~~~~   61 (232)
                      +.|..+|.+..  +....+.+|++++|.|.+.+.|.+.+.|++++..                         .|.|+|..
T Consensus       522 l~V~~~p~~~~--~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a  599 (816)
T 3dmk_A          522 LNVYGLPYIRQ--MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVA  599 (816)
T ss_dssp             EEECSSCEECC--CCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEE
T ss_pred             EEEecCCeeEc--cCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCccccCEEEEEEE
Confidence            45667786643  4567789999999999999989889999995432                         24677766


Q ss_pred             eee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCcEEe-----eCCeE
Q psy15206         62 PYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIF-----TGSTL  128 (232)
Q Consensus        62 ~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~-----~~~~l  128 (232)
                      ...       .+.+.+..+|...........+..|+.+.|.|.+.+.+.+ .+.|++++..+........     ..+.|
T Consensus       600 ~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L  679 (816)
T 3dmk_A          600 KNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVL  679 (816)
T ss_dssp             EESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEE
T ss_pred             EECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEE
Confidence            332       3455666666554433444567789999999999765554 8999999987643322211     13479


Q ss_pred             EECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec--
Q psy15206        129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV--  206 (232)
Q Consensus       129 ~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~--  206 (232)
                      .|.++..+|.|.|+|.+.|..|. ....+.+.|..+|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+.  
T Consensus       680 ~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~  758 (816)
T 3dmk_A          680 TIEAVEASHAGNFTCHARNLAGH-QQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGE  758 (816)
T ss_dssp             EEESCCGGGCEEEEEEEECSSCE-EEEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTC
T ss_pred             EEccCChhhCEEEEEEEEeCCcc-EEEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCcc
Confidence            99999999999999999998877 567778889999999888888888899999999999999999999999764322  


Q ss_pred             -----CCCe-----EEEEEeccccCCceEEEEecC
Q psy15206        207 -----NDEY-----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 -----~~~~-----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                           ...+     -.|.+.++...|+|.|+|.|.
T Consensus       759 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  793 (816)
T 3dmk_A          759 YKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAI  793 (816)
T ss_dssp             CBCCCCBTTEEEETTEEEECSCCGGGCEEEEEEEE
T ss_pred             ccccccCCCEEecCCEEEECcCChhhCeEEEEEEE
Confidence                 1111     157778888999999999984

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.96  E-value=1.9e-27  Score=178.28  Aligned_cols=210  Identities=15%  Similarity=0.232  Sum_probs=154.0

Q ss_pred             CcceEeecCCeEEEEEEecCC---------CCCeEEEEeCcE----------------------eee-eEEEEeeeec--
Q psy15206         20 TQLSVAKEGQSVQLECHAEGH---------PIPTISWRRNFK----------------------RLG-RLHLAIPYTS--   65 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~---------p~~~~~W~~~~~----------------------~~~-~~~~~~~~~~--   65 (232)
                      ..++.+.+|++++|.|.+.+.         |.+.+.|+|++.                      +.| .|.|......  
T Consensus        36 ~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~  115 (329)
T 3oq3_B           36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGD  115 (329)
T ss_dssp             EEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSC
T ss_pred             cceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCc
Confidence            467789999999999999873         568999999542                      336 7888774321  


Q ss_pred             -----CceeecCCcEEecCCCCceEeecCCcEEEEeeeccCC-CCeEEEEeCCeeeCC-CCcEEeeCCeEEECCCCCCCC
Q psy15206         66 -----PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILP-NGQTIFTGSTLQIPRITKEDR  138 (232)
Q Consensus        66 -----~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~~~  138 (232)
                           +.+.+..+|.... ......+.+|+.+.|.|.+.+.| .+.+.|++++..+.. ..++...++.|.|.++..+|.
T Consensus       116 ~~~~~~~~v~~~~p~~~~-~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~  194 (329)
T 3oq3_B          116 CVQGIVRSHIRKPPSCIP-ETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDS  194 (329)
T ss_dssp             EEEEEEEEEECCCCSCEE-EEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGC
T ss_pred             eeeEEEEEEEcCCCcEec-cccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhC
Confidence                 1122223332221 11112345699999999999988 889999999988752 334444578999999999999


Q ss_pred             eEEEEEeEeC--CCCc---eeeEEEEEEEecc----EEEeccceeeeeccCeEEEEEEeecCC---CC-eEEEeeCCEEe
Q psy15206        139 GAYYCVAQNG--IGRG---ARRKIEVKVEFAP----IVTVQSTRIGQALHHDMDLDCHIEAYP---HP-ILYWAKDGEIV  205 (232)
Q Consensus       139 g~y~C~~~~~--~~~~---~~~~~~l~v~~~p----~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~-~~~W~~~g~~~  205 (232)
                      |.|+|.+.|.  .+..   ....+.+.|..+|    .+. .+....+..|+.+.|.|.+.|.|   .+ .+.|+++|..+
T Consensus       195 G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i  273 (329)
T 3oq3_B          195 GRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWI  273 (329)
T ss_dssp             EEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCB
T ss_pred             EEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeee
Confidence            9999999986  4431   2234667777666    334 66677888999999999999998   77 89999998764


Q ss_pred             -cCC-------------CeEEEEEeccccCCce-EEEEecC
Q psy15206        206 -VND-------------EYHSISNFGTSEGTTG-SLQCKVP  231 (232)
Q Consensus       206 -~~~-------------~~~~~~~~~~~~~d~g-~Y~C~~~  231 (232)
                       ..+             ....|.+.++..+|+| .|+|.|.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~  314 (329)
T 3oq3_B          274 IGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGH  314 (329)
T ss_dssp             CCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEE
T ss_pred             eccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEE
Confidence             222             2456778888999999 9999974

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=5.8e-28  Score=181.09  Aligned_cols=223  Identities=16%  Similarity=0.281  Sum_probs=155.1

Q ss_pred             cccCCCeeecCCCcceEeecCCeEEEEEEecCC----CCCeEEEEeCcE-------------------------------
Q psy15206          8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGH----PIPTISWRRNFK-------------------------------   52 (232)
Q Consensus         8 ~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~----p~~~~~W~~~~~-------------------------------   52 (232)
                      .+..+|.+....+.++.+.+|++++|.|.+.+.    +.+.+.|++++.                               
T Consensus         9 ~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~   88 (331)
T 3u83_A            9 QMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPS   88 (331)
T ss_dssp             ------------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCS
T ss_pred             ccCCCCcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccC
Confidence            345566666655788999999999999999875    455799999430                               


Q ss_pred             --------------eeeeEEEEeee-------ecCceeecCCcEEec-CCCCceEeecC---CcEEEEee-eccCCCCeE
Q psy15206         53 --------------RLGRLHLAIPY-------TSPEAQVDTPPVILN-NSPQLSVAKEG---QSVQLECH-AEGHPIPTI  106 (232)
Q Consensus        53 --------------~~~~~~~~~~~-------~~~~l~v~~~p~~~~-~~~~~~~~~~g---~~~~l~C~-~~~~~~~~~  106 (232)
                                    +.|.|.|....       ..+.|.|..+|.... .......+.+|   +.+.|.|. ..+.|.+.+
T Consensus        89 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i  168 (331)
T 3u83_A           89 FTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVV  168 (331)
T ss_dssp             SSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEE
T ss_pred             CCCceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceE
Confidence                          11467776311       156677777666532 23455667777   77999998 778899999


Q ss_pred             EEEeCCeeeC------CCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEecc-ceeeeecc
Q psy15206        107 SWRRENNAIL------PNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS-TRIGQALH  179 (232)
Q Consensus       107 ~W~~~~~~~~------~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g  179 (232)
                      .|++++....      .........+.|.|..+...|.|.|+|.+.+..+. ....+.+.|..+|.+...+ ....+..|
T Consensus       169 ~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~-~~~~~~l~V~~~P~~~~~~~~~~~~~~g  247 (331)
T 3u83_A          169 SWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDR-FKESLTLNVQYEPEVTIEGFDGNWYLQR  247 (331)
T ss_dssp             EEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEE-EEEEEECCEEEEEEEEEECCCSCCBTTC
T ss_pred             EEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCc-ceeeEEEEEecCCeEEEecCCCceEeCC
Confidence            9999532211      11111222346888899999999999999998765 5677788888888876544 33457789


Q ss_pred             CeEEEEEEeecCCCCe-EEEeeCCEEecCC---CeEEEEEe-ccccCCceEEEEecC
Q psy15206        180 HDMDLDCHIEAYPHPI-LYWAKDGEIVVND---EYHSISNF-GTSEGTTGSLQCKVP  231 (232)
Q Consensus       180 ~~~~l~C~~~~~p~~~-~~W~~~g~~~~~~---~~~~~~~~-~~~~~d~g~Y~C~~~  231 (232)
                      +.+.|.|.+.|.|.+. +.|+++|..+...   ....|.+. ++..+|+|.|+|.|.
T Consensus       248 ~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~~~d~G~Y~C~a~  304 (331)
T 3u83_A          248 MDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEAT  304 (331)
T ss_dssp             CCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCCGGGCEEEEEEEE
T ss_pred             CeEEEEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCccccCeEEEEEEE
Confidence            9999999999999998 9999998876543   12356666 788899999999974

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.96  E-value=1.8e-27  Score=178.24  Aligned_cols=216  Identities=16%  Similarity=0.268  Sum_probs=141.9

Q ss_pred             CeeecCCCcceEeecCCeEEEEEEecCC-CCCeEEEEeCcEe--------------------------------------
Q psy15206         13 PVILNNSTQLSVAKEGQSVQLECHAEGH-PIPTISWRRNFKR--------------------------------------   53 (232)
Q Consensus        13 P~i~~~~~~~~~~~~G~~v~l~C~~~~~-p~~~~~W~~~~~~--------------------------------------   53 (232)
                      ..|+.. +.++.+.+|++++|.|.+.+. |.+.+.|+|++..                                      
T Consensus         4 ~~v~~~-p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~   82 (327)
T 2wng_A            4 LQVIQP-DKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT   82 (327)
T ss_dssp             CCEECC-CSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred             eEEEcC-CCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence            345544 788999999999999999986 8889999996321                                      


Q ss_pred             ---eeeEEEEeeee-----------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCC--eEEEEeCCeeeCC
Q psy15206         54 ---LGRLHLAIPYT-----------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP--TISWRRENNAILP  117 (232)
Q Consensus        54 ---~~~~~~~~~~~-----------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~  117 (232)
                         .|.|.|.....           ...|.|..+|...........+.+|+.+.|.|.+.+.+++  .+.|++++..+..
T Consensus        83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~  162 (327)
T 2wng_A           83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSD  162 (327)
T ss_dssp             GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCC
T ss_pred             cccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccc
Confidence               13666665322           2356665443211111122456789999999999987765  8999999987653


Q ss_pred             CCcE---------EeeCCeEEECCCCCCCCeEEEEEeEeCCCCc--eeeEEEE--EEEeccEEEeccceeeeeccCeEEE
Q psy15206        118 NGQT---------IFTGSTLQIPRITKEDRGAYYCVAQNGIGRG--ARRKIEV--KVEFAPIVTVQSTRIGQALHHDMDL  184 (232)
Q Consensus       118 ~~~~---------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l  184 (232)
                      ....         ....+.|.|.....+|.|.|+|.+.|..+..  ......+  .+..+|.+...+..  +..|+.+.|
T Consensus       163 ~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l  240 (327)
T 2wng_A          163 FQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNV  240 (327)
T ss_dssp             EEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEE
T ss_pred             cccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEEE
Confidence            2211         1112357777777777899999999976542  2223333  34567877665544  678999999


Q ss_pred             EEEeecCCCC--eEEEeeCCEEecC----------CCeE----EEEEeccccCCceEEEEecC
Q psy15206        185 DCHIEAYPHP--ILYWAKDGEIVVN----------DEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       185 ~C~~~~~p~~--~~~W~~~g~~~~~----------~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+.|.+++  .+.|+|||..+..          +..+    .+.+..+..+|+|.|+|.|.
T Consensus       241 ~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~  303 (327)
T 2wng_A          241 TCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVE  303 (327)
T ss_dssp             EEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEE
T ss_pred             EEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEE
Confidence            9999995444  7999999987642          2222    24555667789999999974

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.96  E-value=3.8e-27  Score=186.47  Aligned_cols=213  Identities=14%  Similarity=0.161  Sum_probs=148.8

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEec-CCCCCeEEEEeCcEee-------------------------------
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL-------------------------------   54 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~-~~p~~~~~W~~~~~~~-------------------------------   54 (232)
                      +.|..+|.+  . +.+..+.+|++++|.|.+. +.|.+.|+|++++..+                               
T Consensus       224 l~V~~~p~~--~-p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  300 (527)
T 3qs9_E          224 IDLNQTPQT--T-LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN  300 (527)
T ss_dssp             EESSSCCCC--S-CCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGG
T ss_pred             EEEeccCcc--C-CCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcc
Confidence            445566666  2 6788899999999999997 8899999999964321                               


Q ss_pred             --eeEEEEeee---ecCceeecCCcEEecCC-CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeE
Q psy15206         55 --GRLHLAIPY---TSPEAQVDTPPVILNNS-PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTL  128 (232)
Q Consensus        55 --~~~~~~~~~---~~~~l~v~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l  128 (232)
                        |.|+|....   ..+.|.|..+|.+.... .....+.+|+.+.|.|.+.|.|.|.+.|+++|..+............|
T Consensus       301 DsG~Y~C~a~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L  380 (527)
T 3qs9_E          301 DTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSI  380 (527)
T ss_dssp             GCEEEEEEETTEEEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEE
T ss_pred             cCeEEEEEEEeCCCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEE
Confidence              345554422   25567776666554322 233566789999999999999999999999998875444333345689


Q ss_pred             EECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC-
Q psy15206        129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN-  207 (232)
Q Consensus       129 ~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-  207 (232)
                      .|.++..+|+|.|+|.+.|..|. ....+.|.|..+|.+...+.        ...|.|.+.|.|.|.|.|++++..... 
T Consensus       381 ~I~~v~~~D~G~YtC~A~N~~g~-~~~~~~L~V~~~P~i~~~~~--------~~~l~C~a~g~P~p~i~W~~~~~~~~~~  451 (527)
T 3qs9_E          381 SKFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIRRKPQVLAEAS--------ASQASCFSDGYPLPSWTWKKCSDKSPNC  451 (527)
T ss_dssp             EEECCCTTCCSCEEEEEEETTEE-EEEEEEEC--CCCEEEECCC--------CE---EEEECSSCCEEEEECCC-----C
T ss_pred             EEecCCcccCEEEEEEEEeCCCc-EEEEEEEEEecCCeEEEeCC--------CCEEEEEEEEEcCCeEEEEECCCCcCCC
Confidence            99999999999999999998886 55678888999998866542        235799999999999999987654310 


Q ss_pred             -------------------CCeEEEEEeccccCCceEEEEecC
Q psy15206        208 -------------------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       208 -------------------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                                         .......+.....+|+|.|.|.|.
T Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~  494 (527)
T 3qs9_E          452 TEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY  494 (527)
T ss_dssp             CCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEE
T ss_pred             ccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEE
Confidence                               011222222333479999999984

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=1.4e-27  Score=183.14  Aligned_cols=221  Identities=20%  Similarity=0.252  Sum_probs=155.0

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEecC-CCCCeEEEEeCcEe--------------------------eeeEEE
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFKR--------------------------LGRLHL   59 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~-~p~~~~~W~~~~~~--------------------------~~~~~~   59 (232)
                      +.|..+|.|... +.++.+.+|++++|.|.+.+ .|.+.+.|+|++..                          .|.|+|
T Consensus         1 l~v~~~P~~~~~-p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (395)
T 1bih_A            1 LPVDKYPVLKDQ-PAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQC   79 (395)
T ss_dssp             ----CCCEECCC-CSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEE
T ss_pred             CCcCCCCEeecC-CCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEE
Confidence            357789999988 88999999999999999998 88999999995432                          247777


Q ss_pred             Eeeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCe--ee-CC----CCcE-Ee
Q psy15206         60 AIPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENN--AI-LP----NGQT-IF  123 (232)
Q Consensus        60 ~~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~--~~-~~----~~~~-~~  123 (232)
                      .....       .+.+.+...+.. ...+....+.+|+.+.|.|.+ .+.|.+.+.|++++.  .. ..    ..+. ..
T Consensus        80 ~a~n~~g~~~s~~~~l~v~~~~~p-~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  158 (395)
T 1bih_A           80 FAETPAGVASSRVISFRKTYLIAS-PAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG  158 (395)
T ss_dssp             EEEETTEEEECCCEEEEEEEEECC-CCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC
T ss_pred             EEEeCCCeEEeEEEEEEEEEeecC-CcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEc
Confidence            76332       233333221110 011234456689999999996 678889999999862  11 11    1222 23


Q ss_pred             eCCeEEECCCCCCCCe---EEEEEeEeCCCCceeeEEEEEEE------------eccEEEeccceeeeeccCeEEEEEEe
Q psy15206        124 TGSTLQIPRITKEDRG---AYYCVAQNGIGRGARRKIEVKVE------------FAPIVTVQSTRIGQALHHDMDLDCHI  188 (232)
Q Consensus       124 ~~~~l~i~~~~~~~~g---~y~C~~~~~~~~~~~~~~~l~v~------------~~p~~~~~~~~~~~~~g~~~~l~C~~  188 (232)
                      .++.|.|.++...|.|   .|+|.+.+..+..........+.            .+|.+  .+....+..|+.+.|.|.+
T Consensus       159 ~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~  236 (395)
T 1bih_A          159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMY  236 (395)
T ss_dssp             TTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEE
T ss_pred             CCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEe
Confidence            4568999999999999   99999999876633221111111            12222  3455678899999999999


Q ss_pred             ecCCCCeEEEeeCCEEecCCC--e---------EEEEEeccccCCceEEEEecC
Q psy15206        189 EAYPHPILYWAKDGEIVVNDE--Y---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       189 ~~~p~~~~~W~~~g~~~~~~~--~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.|.+.+.|+|+|..+....  +         ..|.+.++...|+|.|+|.|.
T Consensus       237 ~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  290 (395)
T 1bih_A          237 GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD  290 (395)
T ss_dssp             ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEEC
T ss_pred             ccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEE
Confidence            999999999999998875321  1         268888889999999999975

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.95  E-value=1.8e-26  Score=191.91  Aligned_cols=221  Identities=23%  Similarity=0.422  Sum_probs=170.0

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee-----------------eeEEEEeeee-----
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-----------------GRLHLAIPYT-----   64 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~-----------------~~~~~~~~~~-----   64 (232)
                      +.|..+|.+... +.+..+.+|++++|.|.+.+.|.+.+.|++++..+                 |.|+|.....     
T Consensus       338 l~V~~~~~~~~~-~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  416 (816)
T 3dmk_A          338 LTVTAPLSAKID-PPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAE  416 (816)
T ss_dssp             EEECEEEEEEEE-SSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             EEEcCCCceeeC-CCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCCCEEEEcCCCHHHCEEEEEEEECCCCcEE
Confidence            455667777766 77888999999999999999999999999965443                 5788876332     


Q ss_pred             -cCceeec---CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-----C----CeEEEC
Q psy15206         65 -SPEAQVD---TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----G----STLQIP  131 (232)
Q Consensus        65 -~~~l~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-----~----~~l~i~  131 (232)
                       ...+.+.   .+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.........     +    +.|.|.
T Consensus       417 ~~~~l~v~~~~~~p~i~~-~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~  495 (816)
T 3dmk_A          417 ASAELKLGGRFDPPVIRQ-AFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNIT  495 (816)
T ss_dssp             ECCEEECCCSSCCCEEEE-ECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEES
T ss_pred             EEEEEEEccccCCCceEe-cCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEe
Confidence             4445542   3444443 345567788999999999999999999999999887655443321     1    259999


Q ss_pred             CCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeE
Q psy15206        132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH  211 (232)
Q Consensus       132 ~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~  211 (232)
                      ++..+|.|.|+|.+.|..|. ......+.|..+|.+.. +....+..|+.+.|.|.+.+.|.+.+.|+|+|..+....+.
T Consensus       496 ~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~-~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~  573 (816)
T 3dmk_A          496 SVHANDGGLYKCIAKSKVGV-AEHSAKLNVYGLPYIRQ-MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQ  573 (816)
T ss_dssp             SCCTTTCEEEEEEEEETTEE-EEEEEEEEECSSCEECC-CCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTE
T ss_pred             eccccCCEEEEEEEEECCCe-EEEEEEEEEecCCeeEc-cCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCce
Confidence            99999999999999998776 55677888888876543 44456788999999999999998899999999887644322


Q ss_pred             ------EEEEeccc-cCCceEEEEecC
Q psy15206        212 ------SISNFGTS-EGTTGSLQCKVP  231 (232)
Q Consensus       212 ------~~~~~~~~-~~d~g~Y~C~~~  231 (232)
                            .+.+.++. ..|+|.|+|.|.
T Consensus       574 ~~~~~~~l~i~~v~~~~d~G~Y~C~a~  600 (816)
T 3dmk_A          574 KVFPNGTLIIENVERNSDQATYTCVAK  600 (816)
T ss_dssp             EECTTSEEEESSCCHHHHCEEEEEEEE
T ss_pred             EEecCCeEEEEecCccccCEEEEEEEE
Confidence                  45666665 589999999874

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.95  E-value=1.3e-28  Score=184.84  Aligned_cols=211  Identities=23%  Similarity=0.418  Sum_probs=115.6

Q ss_pred             CcceEeecCCeEEEEEEecCC-CCCeEEEEeCcEee-----------------------eeEEEEeeee-----cCceee
Q psy15206         20 TQLSVAKEGQSVQLECHAEGH-PIPTISWRRNFKRL-----------------------GRLHLAIPYT-----SPEAQV   70 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~-p~~~~~W~~~~~~~-----------------------~~~~~~~~~~-----~~~l~v   70 (232)
                      +.+..+.+|++++|.|.+.+. |.+.+.|++++..+                       |.|.|.....     .+.|.|
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~~~l~V   94 (334)
T 1ry7_B           15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRV   94 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeCCeEEEEEEEEE
Confidence            678889999999999999975 57899999964322                       4566654221     334444


Q ss_pred             cCCc----------------------EEec---CCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE----
Q psy15206         71 DTPP----------------------VILN---NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT----  121 (232)
Q Consensus        71 ~~~p----------------------~~~~---~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~----  121 (232)
                      ...+                      .+..   .......+..|+.+.|.|.+.|.|.+.+.|++++..+......    
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~  174 (334)
T 1ry7_B           95 TDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK  174 (334)
T ss_dssp             ------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCC
T ss_pred             eccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccccccee
Confidence            3322                      1111   0112356778999999999999998999999998876543221    


Q ss_pred             -EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEec----cEEEe-ccceeeeeccCeEEEEEEeecCCCCe
Q psy15206        122 -IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFA----PIVTV-QSTRIGQALHHDMDLDCHIEAYPHPI  195 (232)
Q Consensus       122 -~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~----p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~  195 (232)
                       ......|.|.++...|.|.|+|.+.+..+. ....+.+.|...    |.+.. .+....+..|+.+.|.|.+.|.|.+.
T Consensus       175 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~  253 (334)
T 1ry7_B          175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPH  253 (334)
T ss_dssp             CCTTTTEEEECSCCGGGCCCEEEEEEETTEE-EEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEE
T ss_pred             cccceEEEEECCCCcccCEEEEEEEEeCCCC-EEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCe
Confidence             123458999999999999999999998766 556677777652    33332 24566788999999999999999999


Q ss_pred             EEEee----CCEEecCCCe------------------EEEEEeccccCCceEEEEecC
Q psy15206        196 LYWAK----DGEIVVNDEY------------------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       196 ~~W~~----~g~~~~~~~~------------------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|+|    +|..+..+..                  ..|.+.++...|+|.|+|.|.
T Consensus       254 v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  311 (334)
T 1ry7_B          254 IQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG  311 (334)
T ss_dssp             EEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEE
T ss_pred             EEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEe
Confidence            99999    5655432211                  267888889999999999974

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.95  E-value=4.9e-27  Score=179.38  Aligned_cols=220  Identities=17%  Similarity=0.277  Sum_probs=159.1

Q ss_pred             CCCeeecCCCcceEe---ecCCeEEEEEEecCCCCCeEEEEeCcEe--------------------------eeeEEEEe
Q psy15206         11 TPPVILNNSTQLSVA---KEGQSVQLECHAEGHPIPTISWRRNFKR--------------------------LGRLHLAI   61 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~---~~G~~v~l~C~~~~~p~~~~~W~~~~~~--------------------------~~~~~~~~   61 (232)
                      .+|.|+.. |.+..+   .+|++++|.|.+.+.|.+.+.|+|++..                          .|.|+|..
T Consensus         3 ~~P~~~~~-p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a   81 (382)
T 1cs6_A            3 YGPVFEEQ-PAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA   81 (382)
T ss_dssp             EEEEEEEC-CCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEE
T ss_pred             CCCEEEEC-CCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEE
Confidence            58999988 777776   7999999999999989999999995432                          24666665


Q ss_pred             eee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeC--CCCcEEe--eCCeEE
Q psy15206         62 PYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAIL--PNGQTIF--TGSTLQ  129 (232)
Q Consensus        62 ~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~--~~~~~~~--~~~~l~  129 (232)
                      ...       ...|.+...+.+.........+.+|+.+.|.|.+ .+.|.+.+.|++++..+.  ...+...  ..+.|.
T Consensus        82 ~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~  161 (382)
T 1cs6_A           82 TNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY  161 (382)
T ss_dssp             EETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEE
T ss_pred             EcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEE
Confidence            322       3445554433333323455678899999999996 456778999999987642  2222222  236899


Q ss_pred             ECCCCCCCCeEEEEEeEeCCCCce----eeEEEEEEE------eccEEEec-cceeeeeccCeEEEEEEeecCCCCeEEE
Q psy15206        130 IPRITKEDRGAYYCVAQNGIGRGA----RRKIEVKVE------FAPIVTVQ-STRIGQALHHDMDLDCHIEAYPHPILYW  198 (232)
Q Consensus       130 i~~~~~~~~g~y~C~~~~~~~~~~----~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~W  198 (232)
                      |.++...|.|.|+|.+.+..+...    .....+.+.      .+|.+... +....+..|+.+.|.|.+.|.|.+.+.|
T Consensus       162 i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W  241 (382)
T 1cs6_A          162 IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKW  241 (382)
T ss_dssp             ESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEE
T ss_pred             EEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEE
Confidence            999999999999999998654311    122334332      24555443 5567788999999999999999999999


Q ss_pred             eeCCEEecC---CCeEEEEEeccccCCceEEEEecC
Q psy15206        199 AKDGEIVVN---DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       199 ~~~g~~~~~---~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++++..+..   .....+.+.++...|+|.|+|.|.
T Consensus       242 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  277 (382)
T 1cs6_A          242 RKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE  277 (382)
T ss_dssp             EECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred             EECCcccccEEecCCcEEEEccCChhhCEEEEEEEE
Confidence            998876542   244577788889999999999873

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=172.50  Aligned_cols=208  Identities=14%  Similarity=0.171  Sum_probs=146.9

Q ss_pred             CcceEeecCCeEEEEEEec-CCCCCeEEEEeCcEee---------------------------eeEEEEeeee-----cC
Q psy15206         20 TQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL---------------------------GRLHLAIPYT-----SP   66 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~-~~p~~~~~W~~~~~~~---------------------------~~~~~~~~~~-----~~   66 (232)
                      ...+.+.+|+.++|.|... +.|.+.+.|+|++..+                           |.|+|.....     ..
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~   87 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSY   87 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEE
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEE
Confidence            3456788999999999886 5788999999965432                           3455544221     22


Q ss_pred             ceeecC------------CcEEecCCCCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcEEeeC------Ce
Q psy15206         67 EAQVDT------------PPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTG------ST  127 (232)
Q Consensus        67 ~l~v~~------------~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~------~~  127 (232)
                      .+.+..            +|.+.........+.+|+.+.|.|.+. +.|.+.+.|++++..+....+.....      ..
T Consensus        88 ~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~  167 (312)
T 2y23_A           88 LIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE  167 (312)
T ss_dssp             EECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEE
T ss_pred             EEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEE
Confidence            233321            333222112256777899999999998 78889999999999886654433321      23


Q ss_pred             EEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE---------------------EeccEEEeccceeeeeccCeEEEEE
Q psy15206        128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV---------------------EFAPIVTVQSTRIGQALHHDMDLDC  186 (232)
Q Consensus       128 l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v---------------------~~~p~~~~~~~~~~~~~g~~~~l~C  186 (232)
                      |.|.++..+|.|.|+|.+.+....   ....+.+                     ..+|.+.. +....+..|+.+.|.|
T Consensus       168 L~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~v~~G~~~~l~C  243 (312)
T 2y23_A          168 MFMEKLQDEDEGTYTFQLQDGKAT---NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE-YLSWEVTGECNVLLKC  243 (312)
T ss_dssp             EEESCCCGGGCEEEEEEEESSSCE---EEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEE-EEEEEEETTTEEEEEE
T ss_pred             EEEccCCcccCEeEEEEEEeCCce---EEEEEEEcchhhhhhcccccccccchhhccCCceee-cceEEEeCCCEEEEEE
Confidence            999999999999999999764332   2222222                     12355443 2236778999999999


Q ss_pred             EeecCCCC-eEEEeeCCEEecC-------CCeEEEEEeccccCCceEEEEecC
Q psy15206        187 HIEAYPHP-ILYWAKDGEIVVN-------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       187 ~~~~~p~~-~~~W~~~g~~~~~-------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.+.|.+ .+.|+|+|..+..       .....|.+.++..+|+|.|+|.|.
T Consensus       244 ~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~  296 (312)
T 2y23_A          244 KVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK  296 (312)
T ss_dssp             EEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEE
T ss_pred             EEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEE
Confidence            99999988 9999999988762       234678888899999999999973

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.95  E-value=6e-27  Score=170.41  Aligned_cols=202  Identities=19%  Similarity=0.335  Sum_probs=147.2

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecC-CCCC--eEEEEeCcEee------------------------e--eEEEEe
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIP--TISWRRNFKRL------------------------G--RLHLAI   61 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~-~p~~--~~~W~~~~~~~------------------------~--~~~~~~   61 (232)
                      .+|.|...    ..+.+|++++|.|.+.+ .|.+  .+.|++++..+                        |  +|.|..
T Consensus         5 ~~p~~~~~----~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a   80 (265)
T 2oz4_A            5 TPPQLVSP----RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAV   80 (265)
T ss_dssp             SCCEEECC----SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEE
T ss_pred             CCCccccC----ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEE
Confidence            46777633    47899999999999998 7765  99999964332                        1  366665


Q ss_pred             eee------cCceeecC--CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCC
Q psy15206         62 PYT------SPEAQVDT--PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRI  133 (232)
Q Consensus        62 ~~~------~~~l~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~  133 (232)
                      ...      ...|.|..  +|.+.   .....+.+|+.+.|.|.+.  |.+.+.|  +|..+....    ..+.|.|..+
T Consensus        81 ~n~~~~~~~~~~l~V~~~p~p~~~---~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~----~~~~l~i~~~  149 (265)
T 2oz4_A           81 ILGNQSQETLQTVTIYSFPAPNVI---LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG----PRAQLLLKAT  149 (265)
T ss_dssp             EETTEEEEEEEEEEEECCCCCEEE---ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS----SEECCEEECC
T ss_pred             ecCCCCcEEEEEEEEeCCCCceee---cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC----CcEEEEEccc
Confidence            332      45666654  23332   2334577899999999997  7889999  676653222    1245778899


Q ss_pred             CCCCCeEEEEEeEeCC-CCce--eeEEEEEEEeccEEEec--cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC
Q psy15206        134 TKEDRGAYYCVAQNGI-GRGA--RRKIEVKVEFAPIVTVQ--STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND  208 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~-~~~~--~~~~~l~v~~~p~~~~~--~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~  208 (232)
                      ..+|.|.|+|.+.+.. |...  ...+.+.|..+|.+...  +....+.+|+.+.|.|.+.|.|.|.+.|+|+|..+...
T Consensus       150 ~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~  229 (265)
T 2oz4_A          150 PEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI  229 (265)
T ss_dssp             GGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT
T ss_pred             cccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCC
Confidence            9999999999998643 5422  26677888888877554  34667889999999999999999999999999854444


Q ss_pred             CeEEEEEeccccCCceEEEEecC
Q psy15206        209 EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ....    .+..+|+|.|+|.|.
T Consensus       230 g~~~----~v~~~d~G~Y~C~a~  248 (265)
T 2oz4_A          230 GESV----TVTRDLEGTYLCRAR  248 (265)
T ss_dssp             TSCE----ECCGGGCEEEEEEEE
T ss_pred             CcEE----EeehhhCeEEEEEEE
Confidence            4332    266799999999974

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.95  E-value=1.1e-26  Score=173.14  Aligned_cols=215  Identities=14%  Similarity=0.187  Sum_probs=144.4

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe-----------------------eeeEEEEeee
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR-----------------------LGRLHLAIPY   63 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~-----------------------~~~~~~~~~~   63 (232)
                      ..+..+|.|... |. ..+.+|++++|.|.+.+. .+.+.|+|++..                       .|.|.|....
T Consensus        19 ~~~~~~P~i~~~-p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   95 (316)
T 3vh8_G           19 MGGQDKPFLSAW-PS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSH   95 (316)
T ss_dssp             -----CCEEEEE-SC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBC
T ss_pred             cCCCCCCEeecc-CC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEc
Confidence            345679999988 55 578899999999999987 678999995432                       2588887532


Q ss_pred             -----------ecCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE-E----ee
Q psy15206         64 -----------TSPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT-I----FT  124 (232)
Q Consensus        64 -----------~~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~----~~  124 (232)
                                 ..+.|.|..   +|.+.. .+.. .+.+|+.+.|.|.+. .+.+.+.|++++..+...... .    ..
T Consensus        96 ~~~~~~~~~~s~~~~l~V~~~~~~p~~~~-~~~~-~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~  172 (316)
T 3vh8_G           96 PHSPTGWSAPSNPVVIMVTGNHRKPSLLA-HPGP-LVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVS  172 (316)
T ss_dssp             SSSSSSBCCCCCCEEEEEECSSCCCEEEE-ESCS-EEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEE
T ss_pred             CCCCcceecCCCcEEEEEecCCCCCeEEe-cCCC-ccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCc
Confidence                       133455532   233332 2332 377899999999995 456689999998765322111 0    13


Q ss_pred             CCeEEECCCCCCCCeEEEEEeEeCCCCc----eeeEEEEEEE---eccEEEeccceeeeeccCeEEEEEEeecCCCCeEE
Q psy15206        125 GSTLQIPRITKEDRGAYYCVAQNGIGRG----ARRKIEVKVE---FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY  197 (232)
Q Consensus       125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~----~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~  197 (232)
                      ...|.|.++..+|.|.|+|.+.|..+..    .+..+.+.|.   .+|.+...+.. .+..|+.++|.|.+. .|.+.+.
T Consensus       173 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~  250 (316)
T 3vh8_G          173 KANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP-KVQAGESVTLSCSSR-SSYDMYH  250 (316)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCS-CCCTTSCCEEEEEES-SCCSEEE
T ss_pred             eEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCC-eecCCCcEEEEEECC-CCCcEEE
Confidence            4579999999999999999999876531    2445566665   35566655543 567899999999996 4778999


Q ss_pred             EeeCCEEecC--------C--CeEEEEEeccccCCceEEEEecC
Q psy15206        198 WAKDGEIVVN--------D--EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       198 W~~~g~~~~~--------~--~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+|+|..+..        .  ....+.+.+++  |+|.|+|.+.
T Consensus       251 W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~  292 (316)
T 3vh8_G          251 LSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGS  292 (316)
T ss_dssp             EEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEE
T ss_pred             EEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEee
Confidence            9999865431        1  12467777777  9999999874

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.95  E-value=3.9e-27  Score=178.86  Aligned_cols=190  Identities=15%  Similarity=0.150  Sum_probs=143.1

Q ss_pred             ceEeecCCeEEEEEEecCCCCCeEEEEeCcE-----------------eeeeEEEEeeee------cCceeecCCcEEec
Q psy15206         22 LSVAKEGQSVQLECHAEGHPIPTISWRRNFK-----------------RLGRLHLAIPYT------SPEAQVDTPPVILN   78 (232)
Q Consensus        22 ~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~-----------------~~~~~~~~~~~~------~~~l~v~~~p~~~~   78 (232)
                      ...+.+|++++|.|.+.+.|.+.+.|++++.                 +.|.|.|.....      .+.+.|..+|.   
T Consensus       105 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~---  181 (363)
T 1wio_A          105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK---  181 (363)
T ss_dssp             CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEEESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSC---
T ss_pred             ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccccceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCC---
Confidence            3467899999999999998999999999642                 225777776432      44444443332   


Q ss_pred             CCCCceEeecCCcEEEEeeecc-----CCCCeEEEEeCCeeeCC--------CCcEEe------------e--CCeEEEC
Q psy15206         79 NSPQLSVAKEGQSVQLECHAEG-----HPIPTISWRRENNAILP--------NGQTIF------------T--GSTLQIP  131 (232)
Q Consensus        79 ~~~~~~~~~~g~~~~l~C~~~~-----~~~~~~~W~~~~~~~~~--------~~~~~~------------~--~~~l~i~  131 (232)
                       .+....+.+|+.+.|.|.+.+     .|.+.+.|+++|..+..        ......            .  ...|.|.
T Consensus       182 -~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  260 (363)
T 1wio_A          182 -ASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLP  260 (363)
T ss_dssp             -SEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEES
T ss_pred             -CCCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEc
Confidence             123456778999999998877     67788999999877654        223222            1  3389999


Q ss_pred             CCCCCCCeEEEEEeEeC--CCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCe--EEEeeCCEEecC
Q psy15206        132 RITKEDRGAYYCVAQNG--IGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPI--LYWAKDGEIVVN  207 (232)
Q Consensus       132 ~~~~~~~g~y~C~~~~~--~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~W~~~g~~~~~  207 (232)
                      ++..+|.|.|+|.+.|.  .|. ....+.+.|..             ..|+.+.|.|.+.|.|.|.  +.|+|+|..+..
T Consensus       261 ~v~~~d~G~Y~C~a~n~~~~g~-~~~~~~l~V~~-------------v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~  326 (363)
T 1wio_A          261 QALPQYAGSGNLTLALEAKTGK-LHQEVNLVVMR-------------ATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV  326 (363)
T ss_dssp             SBCGGGCEEEEEEECBTTTTCC-EEEEEEEEEEE-------------ECCCSSSEEEEEESSCCTTCCEEEECSSSSCSE
T ss_pred             cCCcCcCcEEEEEEEEhhhcCe-EEEEEeEEEEE-------------ecCCCeeEEEEEccccCCCccEEEEeCCCceee
Confidence            99999999999999998  775 55666666651             1288899999999999988  999999987765


Q ss_pred             CCeEEEEEeccccCCceEEEEecC
Q psy15206        208 DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       208 ~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.++  .+.++..+|+|.|+|.|+
T Consensus       327 ~~~l--~i~~v~~~d~G~Y~C~a~  348 (363)
T 1wio_A          327 SKRE--KAVWVLNPEAGMWQCLLS  348 (363)
T ss_dssp             EESS--SEEEESSCCSEEEEEEEC
T ss_pred             eeee--eeeeeccccceeEEEEEe
Confidence            4443  446678899999999985

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.95  E-value=1.6e-26  Score=172.13  Aligned_cols=211  Identities=15%  Similarity=0.170  Sum_probs=150.0

Q ss_pred             CcceEeecCCeEEEEEEecCCCCC-----eEEEEeCcEe-----------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIP-----TISWRRNFKR-----------------------------------------   53 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~-----~~~W~~~~~~-----------------------------------------   53 (232)
                      |.++.+..|++++|.|.+.+.+.+     ++.|+|++..                                         
T Consensus         7 P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v   86 (313)
T 4fqp_A            7 PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL   86 (313)
T ss_dssp             CSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSC
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcC
Confidence            677888999999999999875543     5899985321                                         


Q ss_pred             ----eeeEEEEeee-------ecCceeecCCcEEecCCCCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcE
Q psy15206         54 ----LGRLHLAIPY-------TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQT  121 (232)
Q Consensus        54 ----~~~~~~~~~~-------~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~  121 (232)
                          .|.|.|....       ..+.|.+..+|.... ......+..++.+.+.|.+. +.|.+.+.|++++..+......
T Consensus        87 ~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~-~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~  165 (313)
T 4fqp_A           87 RVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA-EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQV  165 (313)
T ss_dssp             CGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEE-EECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEE
T ss_pred             ChhhCEEEEEEEeeccCcceeeeeeeeeccCCccee-cccceEeecCceEEEEEEccCccCCcEEEeecCCcccccccee
Confidence                1456665411       144566666665443 22334455677888899865 5788899999998765322111


Q ss_pred             -------EeeCCeEEECCCCCCCCeEEEEEeEeCCCC-ceeeEEEEEEEeccEEEeccce-eeeeccCeEEEEEEeecCC
Q psy15206        122 -------IFTGSTLQIPRITKEDRGAYYCVAQNGIGR-GARRKIEVKVEFAPIVTVQSTR-IGQALHHDMDLDCHIEAYP  192 (232)
Q Consensus       122 -------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p  192 (232)
                             ....+.|.|......|.|.|+|.+.|..+. .....+.+.|..+|.+.+.+.. ..+..|+.+.|.|.+.|.|
T Consensus       166 ~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P  245 (313)
T 4fqp_A          166 PGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNP  245 (313)
T ss_dssp             ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEES
T ss_pred             eeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCC
Confidence                   111235888999999999999999986544 2455667778888887665443 3455688999999999999


Q ss_pred             CC-eEEEeeCCEEecCCC---eEEEEEeccccCCceEEEEecC
Q psy15206        193 HP-ILYWAKDGEIVVNDE---YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       193 ~~-~~~W~~~g~~~~~~~---~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .| .|.|+|+|..+....   ...|.+.+++..|+|.|+|.|.
T Consensus       246 ~p~~v~W~~~~~~l~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  288 (313)
T 4fqp_A          246 EPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVT  288 (313)
T ss_dssp             CCCEEEEEETTBSCCTTEEEETTEEEECCCSSCCEEEEEEEEE
T ss_pred             CCcEEEEEECCEECCCceEEeCCEEEECcCChhhCEEEEEEEE
Confidence            98 699999998765321   1357778889999999999974

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.95  E-value=1.6e-26  Score=176.91  Aligned_cols=220  Identities=19%  Similarity=0.314  Sum_probs=153.8

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEe-CcEe-------------------------------eeeEE
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRR-NFKR-------------------------------LGRLH   58 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~-~~~~-------------------------------~~~~~   58 (232)
                      .+|.|+..+...+.+.+|+.++|.|.+.+.|.+.+.|++ ++..                               .|.|+
T Consensus         2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~   81 (388)
T 2v5m_A            2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA   81 (388)
T ss_dssp             EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEE
T ss_pred             CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEE
Confidence            479999884444668899999999999999999999999 4321                               45677


Q ss_pred             EEeeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCC---CeEEEEeCCeeeCC-----CCcE-E
Q psy15206         59 LAIPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAILP-----NGQT-I  122 (232)
Q Consensus        59 ~~~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~~~-----~~~~-~  122 (232)
                      |.....       .+.+.+..+|.+.. .+....+.+|+.+.|.|.+.+.+.   +.+.|++++..+..     ..+. .
T Consensus        82 C~a~n~~g~~~s~~~~v~v~~~p~~~~-~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  160 (388)
T 2v5m_A           82 CLARNQFGSIISRDVHVRAVVAQYYEA-DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV  160 (388)
T ss_dssp             EEEEETTEEEECCCEEEEEECCCCCCC-BCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEE
T ss_pred             EEEEccCCeEEecceEEEEcccccccc-CccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEE
Confidence            766322       34455555554433 345567889999999999987543   67999999876532     1222 3


Q ss_pred             eeCCeEEECCCCCCCC-eEEEEEeEeCCCCceee---EEEEEEEec-----cEEE-eccceeeeeccCeEEEEEEeecCC
Q psy15206        123 FTGSTLQIPRITKEDR-GAYYCVAQNGIGRGARR---KIEVKVEFA-----PIVT-VQSTRIGQALHHDMDLDCHIEAYP  192 (232)
Q Consensus       123 ~~~~~l~i~~~~~~~~-g~y~C~~~~~~~~~~~~---~~~l~v~~~-----p~~~-~~~~~~~~~~g~~~~l~C~~~~~p  192 (232)
                      ..++.|.|.+++.+|. |.|+|.+.+..+.....   ...+.|..+     |.+. .......+..|+.+.|.|.+.|.|
T Consensus       161 ~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p  240 (388)
T 2v5m_A          161 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFP  240 (388)
T ss_dssp             CTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEES
T ss_pred             ccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCC
Confidence            3457899999999999 99999999875432211   123444433     2211 112334577899999999999999


Q ss_pred             CCeEEEeeCCEE------ecCCC-----eEEEEEeccccCCceEEEEecC
Q psy15206        193 HPILYWAKDGEI------VVNDE-----YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       193 ~~~~~W~~~g~~------~~~~~-----~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.+.|+|++..      +....     ...|.+.++...|+|.|+|.|.
T Consensus       241 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  290 (388)
T 2v5m_A          241 APSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN  290 (388)
T ss_dssp             CCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEe
Confidence            999999997421      21121     1257778888899999999874

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.95  E-value=3.6e-26  Score=181.36  Aligned_cols=218  Identities=15%  Similarity=0.218  Sum_probs=147.4

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCC--CeEEEEeCcEee---------------------------------
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPI--PTISWRRNFKRL---------------------------------   54 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~--~~~~W~~~~~~~---------------------------------   54 (232)
                      ..+|.+... +....+.+|++++|.|.+.+.++  +.+.|+|++..+                                 
T Consensus       112 ~~~P~~~~~-~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  190 (523)
T 2rcj_C          112 KANPTVTLF-PPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSH  190 (523)
T ss_pred             CcCCeEEec-CCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCC
Confidence            467888877 66667788999999999998665  399999965321                                 


Q ss_pred             eeEEEEeeee------cCce----eecCCcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEEEEeCCeeeCCCC--c
Q psy15206         55 GRLHLAIPYT------SPEA----QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWRRENNAILPNG--Q  120 (232)
Q Consensus        55 ~~~~~~~~~~------~~~l----~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~~~--~  120 (232)
                      |.|+|.....      .+.+    .+..+|.+... .....+.+|+.+.|.|.+.|. |.+ .+.|++++..+....  .
T Consensus       191 G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~-~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~  269 (523)
T 2rcj_C          191 RSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPL-APSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPA  269 (523)
T ss_pred             ceEEEEEEecCcccccceeeeecCCCCcCCEEEec-CCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCc
Confidence            2444444222      1111    11234444322 222345689999999999886 767 799999987642110  1


Q ss_pred             E------EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEec-cceee-eeccCeEEEEEEeecCC
Q psy15206        121 T------IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ-STRIG-QALHHDMDLDCHIEAYP  192 (232)
Q Consensus       121 ~------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~-~~~g~~~~l~C~~~~~p  192 (232)
                      .      ....+.|.|.++..+| |.|+|.+.|..+. ......+.+...|.+... +.... +..|+.+.|.|.+.|.|
T Consensus       270 ~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~-~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~  347 (523)
T 2rcj_C          270 VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN-TKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVS  347 (523)
T ss_pred             EecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCC-cceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEeccc
Confidence            1      1113479999999999 9999999998776 334455555555665443 33333 67899999999999875


Q ss_pred             C----CeEEEeeCCEEecCCC----------eE----EEEEeccccCCceEEEEecC
Q psy15206        193 H----PILYWAKDGEIVVNDE----------YH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       193 ~----~~~~W~~~g~~~~~~~----------~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +    +.|.|+|+|..+....          .+    .|.+......|+|.|+|.|.
T Consensus       348 p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~  404 (523)
T 2rcj_C          348 HEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVS  404 (523)
T ss_pred             CCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEe
Confidence            4    4899999998775322          22    25556667789999999984

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.95  E-value=1.1e-27  Score=180.20  Aligned_cols=222  Identities=16%  Similarity=0.258  Sum_probs=160.6

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEec-------CCCCCeEEEEeCcEee---------------------------
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAE-------GHPIPTISWRRNFKRL---------------------------   54 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~-------~~p~~~~~W~~~~~~~---------------------------   54 (232)
                      ....|.+... +.+..+.+|++++|.|.+.       +.|.+.+.|++++...                           
T Consensus        15 ~~~~p~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~   93 (339)
T 3o4o_C           15 ARSCRFRGRH-YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDS   93 (339)
T ss_dssp             ---CEEEEEC-SCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCC
T ss_pred             chhhHhhCcC-ceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccC
Confidence            4457888888 8899999999999999998       8889999999965431                           


Q ss_pred             eeEEEEeeee------cCceeecCCcEEe-cCCCCceEeecCCcEEEEee-----eccCCCCeEEEEeCCeeeCCC-CcE
Q psy15206         55 GRLHLAIPYT------SPEAQVDTPPVIL-NNSPQLSVAKEGQSVQLECH-----AEGHPIPTISWRRENNAILPN-GQT  121 (232)
Q Consensus        55 ~~~~~~~~~~------~~~l~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~-----~~~~~~~~~~W~~~~~~~~~~-~~~  121 (232)
                      |.|.|.....      .+.|.|..++... ........+..|+.+.|.|.     +.+.|.+.+.|++++..+... .+.
T Consensus        94 G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~  173 (339)
T 3o4o_C           94 GTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF  173 (339)
T ss_dssp             EEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSE
T ss_pred             EEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCcee
Confidence            3455544221      4445554433211 00112246778999999999     777888999999999887544 233


Q ss_pred             EeeC--CeEEECCCCCCCCeEEEEEeEeCCCC---ceeeEEEEEEEe-----ccEEEeccceeeeeccCeEEEEEEe---
Q psy15206        122 IFTG--STLQIPRITKEDRGAYYCVAQNGIGR---GARRKIEVKVEF-----APIVTVQSTRIGQALHHDMDLDCHI---  188 (232)
Q Consensus       122 ~~~~--~~l~i~~~~~~~~g~y~C~~~~~~~~---~~~~~~~l~v~~-----~p~~~~~~~~~~~~~g~~~~l~C~~---  188 (232)
                      ....  +.|.|.++..+|.|.|+|.+.|..+.   .....+.+.|..     +|.+...+....+..|+.+.|.|.+   
T Consensus       174 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~  253 (339)
T 3o4o_C          174 LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLG  253 (339)
T ss_dssp             EECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEES
T ss_pred             EEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECC
Confidence            3332  47999999999999999999987653   245566777763     4566555666678889999999999   


Q ss_pred             ecCC-CCeEEEeeCCEEecC-----------------CC-e---EEEEEeccccCCc-eEEEEecC
Q psy15206        189 EAYP-HPILYWAKDGEIVVN-----------------DE-Y---HSISNFGTSEGTT-GSLQCKVP  231 (232)
Q Consensus       189 ~~~p-~~~~~W~~~g~~~~~-----------------~~-~---~~~~~~~~~~~d~-g~Y~C~~~  231 (232)
                      .|.| .+.+.|+++|..+..                 ++ .   ..|.+.++..+|+ |.|+|.|.
T Consensus       254 ~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~  319 (339)
T 3o4o_C          254 TGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVH  319 (339)
T ss_dssp             SSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEE
T ss_pred             CCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEE
Confidence            8999 788999999865421                 11 1   1577788888997 99999974

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.95  E-value=3.3e-26  Score=168.46  Aligned_cols=208  Identities=12%  Similarity=0.099  Sum_probs=139.9

Q ss_pred             CeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------------eeEEEEeeee--
Q psy15206         13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------------GRLHLAIPYT--   64 (232)
Q Consensus        13 P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------------~~~~~~~~~~--   64 (232)
                      |.|... ..++.+.+|++++|.|.+.+.    +.|++++..+                          |.|+|.....  
T Consensus         1 P~i~~~-~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g   75 (289)
T 3mjg_X            1 LVVTPP-GPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG   75 (289)
T ss_dssp             CCBCSS-CSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC---
T ss_pred             CeecCC-CCeEEEeCCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCC
Confidence            566655 667889999999999999874    9999954432                          3566655221  


Q ss_pred             -------cCceeecCCcEEecCCCCc---eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCC
Q psy15206         65 -------SPEAQVDTPPVILNNSPQL---SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRIT  134 (232)
Q Consensus        65 -------~~~l~v~~~p~~~~~~~~~---~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~  134 (232)
                             .+.+.+..+..........   ..+.+|+.+.|.|.+. .|.+.+.|++.+........... ...+.    .
T Consensus        76 ~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~-~~~~~----~  149 (289)
T 3mjg_X           76 LETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDH-QRGFS----G  149 (289)
T ss_dssp             ---CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEET-TTEEE----E
T ss_pred             CCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecC-CcCee----e
Confidence                   2223333222221111112   5677899999999998 67778999887533222111111 11222    3


Q ss_pred             CCCCeEEEEEeEeCCCCceeeEEEEEEEe--ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec------
Q psy15206        135 KEDRGAYYCVAQNGIGRGARRKIEVKVEF--APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV------  206 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~------  206 (232)
                      ..|.|.|+|.+.+..+...+..+.+.+..  +|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++....      
T Consensus       150 ~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~  229 (289)
T 3mjg_X          150 IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV  229 (289)
T ss_dssp             CCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCE
T ss_pred             eccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCccccc
Confidence            56899999999976654344445566654  6666666666778899999999999999999999997654321      


Q ss_pred             --------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        207 --------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 --------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                              ......|.+.++..+|+|.|+|.|.
T Consensus       230 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  262 (289)
T 3mjg_X          230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVT  262 (289)
T ss_dssp             EEESCTTTTEEEEEEEESSCCSSCCEEEEEEEE
T ss_pred             ccccCCcceEEEEEEEEcccChhhCcEEEEEee
Confidence                    1133678888999999999999974

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.95  E-value=1.2e-26  Score=176.19  Aligned_cols=195  Identities=14%  Similarity=0.204  Sum_probs=144.0

Q ss_pred             ceEeecCCeEEEEEEecCCCCCeEEEEeCcEe--------------------------------------------eeeE
Q psy15206         22 LSVAKEGQSVQLECHAEGHPIPTISWRRNFKR--------------------------------------------LGRL   57 (232)
Q Consensus        22 ~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~--------------------------------------------~~~~   57 (232)
                      .+.+.+|++++|.|.+.+.|.+.+.|+|++..                                            .|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            46789999999999999989999999997421                                            0245


Q ss_pred             EEEeeee--cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCC
Q psy15206         58 HLAIPYT--SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITK  135 (232)
Q Consensus        58 ~~~~~~~--~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~  135 (232)
                      .|.....  .+.|.|..  ...  .+ ...+.+|+.+.|.|.+.+.|.+.+.|++++..+      ......|.|.++..
T Consensus        83 ~C~~~n~~~~~~l~V~~--~~~--~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i~~v~~  151 (363)
T 1wio_A           83 ICEVEDQKEEVQLLVFG--LTA--NS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVSQLEL  151 (363)
T ss_dssp             EEEETTEEEEEEEEEEE--EEE--SS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCE------EEESSEEEECSBCG
T ss_pred             EEEEEECCCcEEEEEEe--CCC--CC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc------cccceEEEEeeCCh
Confidence            5544222  44455442  111  22 235678999999999988888999999987543      33567899999999


Q ss_pred             CCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeec-----CCCCeEEEeeCCEEecC---
Q psy15206        136 EDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEA-----YPHPILYWAKDGEIVVN---  207 (232)
Q Consensus       136 ~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~~~W~~~g~~~~~---  207 (232)
                      +|.|.|+|.+.+..+. ....+.+.|..+|...   ....+.+|+.+.|.|.+.+     .|.+.+.|+++|..+..   
T Consensus       152 ~d~G~Y~C~a~~~~~~-~~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~  227 (363)
T 1wio_A          152 QDSGTWTCTVLQNQKK-VEFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWI  227 (363)
T ss_dssp             GGCEECEEEEEETTEE-EEECCEECEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEE
T ss_pred             hcCCEEEEEEecCCCe-EEEEEEEEEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEE
Confidence            9999999999986443 3444566666555432   4456778999999998877     77889999999876543   


Q ss_pred             -----CC-------------------eEEEEEeccccCCceEEEEecC
Q psy15206        208 -----DE-------------------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       208 -----~~-------------------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                           +.                   ...|.+.++..+|+|.|+|.|.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  275 (363)
T 1wio_A          228 TFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLA  275 (363)
T ss_dssp             EEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEEC
T ss_pred             EEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEE
Confidence                 22                   3367777888899999999984

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.94  E-value=9e-27  Score=173.01  Aligned_cols=212  Identities=19%  Similarity=0.266  Sum_probs=148.9

Q ss_pred             CcceEeecCCeEEEEEEecC-CCCCeEEEEeCcE---------------------------------------------e
Q psy15206         20 TQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFK---------------------------------------------R   53 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~-~p~~~~~W~~~~~---------------------------------------------~   53 (232)
                      ++++.+.+|++++|.|.+.+ .+.+.+.|+|+..                                             +
T Consensus         6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   85 (308)
T 4fom_A            6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSD   85 (308)
T ss_dssp             CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGG
T ss_pred             CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHH
Confidence            45788999999999999875 4556799998311                                             1


Q ss_pred             eeeEEEEeeee-------cCceeecCCcEEe-cCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCCC-----
Q psy15206         54 LGRLHLAIPYT-------SPEAQVDTPPVIL-NNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNG-----  119 (232)
Q Consensus        54 ~~~~~~~~~~~-------~~~l~v~~~p~~~-~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~-----  119 (232)
                      .|.|.|.....       ...+.+...+... ...+.......|+.+.|.|.+ .+.|.+.+.|++++..+....     
T Consensus        86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~  165 (308)
T 4fom_A           86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN  165 (308)
T ss_dssp             CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred             CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence            14677755221       3344444444332 223344445568899999985 578899999999987653221     


Q ss_pred             cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC-ceeeEEEEEEEeccEEEeccce-eeeeccCeEEEEEEeecCCCC-eE
Q psy15206        120 QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR-GARRKIEVKVEFAPIVTVQSTR-IGQALHHDMDLDCHIEAYPHP-IL  196 (232)
Q Consensus       120 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~-~~  196 (232)
                      ......+.|.|..+...|.|.|+|.+.|..+. .....+.|.|..+|.+...+.. ..+..|+.+.|.|.+.|.|.| .+
T Consensus       166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v  245 (308)
T 4fom_A          166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKS  245 (308)
T ss_dssp             SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEE
T ss_pred             ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEE
Confidence            11122346899999999999999999997554 2445567777788887665443 345568899999999999988 69


Q ss_pred             EEeeCCEEecC----CCeEEEEEeccccCCceEEEEecC
Q psy15206        197 YWAKDGEIVVN----DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       197 ~W~~~g~~~~~----~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|+|+|..+..    .+...+.+.+++.+|+|.|+|.|.
T Consensus       246 ~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~  284 (308)
T 4fom_A          246 VWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVT  284 (308)
T ss_dssp             ECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEE
T ss_pred             EEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEE
Confidence            99999876643    234455667788899999999974

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.94  E-value=1.9e-25  Score=177.19  Aligned_cols=209  Identities=16%  Similarity=0.254  Sum_probs=144.8

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEeCcE-----------------------------------------eeeeEE
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK-----------------------------------------RLGRLH   58 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~-----------------------------------------~~~~~~   58 (232)
                      |.++.+.+|++++|.|.+.+.+.+.+.|+|+..                                         +.|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (523)
T 2rcj_C            7 PPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDESDYY   86 (523)
T ss_pred             CCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCEEEE
Confidence            678899999999999999988889999998531                                         003455


Q ss_pred             EEeee---------ecCceee----cCCcEEecCCCCceEeecCCcEEEEeeeccCCCC--eEEEEeCCeeeCCCCcEE-
Q psy15206         59 LAIPY---------TSPEAQV----DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP--TISWRRENNAILPNGQTI-  122 (232)
Q Consensus        59 ~~~~~---------~~~~l~v----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~-  122 (232)
                      |....         ....|.|    ..+|.+.. .+......+|+.+.|.|.+.|.+++  .+.|+++|..+....... 
T Consensus        87 C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~-~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~  165 (523)
T 2rcj_C           87 CASWNSSDNSYVFGTGTKVTVLGQPKANPTVTL-FPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTK  165 (523)
T ss_pred             EEEccCCCccccccCceEEEeccCCCcCCeEEe-cCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEecc
Confidence            54422         1335566    23444432 3333455578999999999987654  899999998764322111 


Q ss_pred             ---------eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE----EEeccEEEeccceeeeeccCeEEEEEEee
Q psy15206        123 ---------FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK----VEFAPIVTVQSTRIGQALHHDMDLDCHIE  189 (232)
Q Consensus       123 ---------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~g~~~~l~C~~~  189 (232)
                               ...+.|.|.++..+|.|.|+|.+.|..+.. ...+.+.    +..+|.+........+..|+.+.|.|.+.
T Consensus       166 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~  244 (523)
T 2rcj_C          166 PSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV-EKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVK  244 (523)
T ss_pred             ccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccc-ccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEe
Confidence                     011369999999999999999999976652 2222221    23456665444344567899999999998


Q ss_pred             cC-CCC-eEEEeeCCEEec---------CCCe----EEEEEeccccCCceEEEEecC
Q psy15206        190 AY-PHP-ILYWAKDGEIVV---------NDEY----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       190 ~~-p~~-~~~W~~~g~~~~---------~~~~----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |. |.+ .|.|+++|..+.         .++.    ..|.+.++...| |.|+|.|.
T Consensus       245 g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~  300 (523)
T 2rcj_C          245 DYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  300 (523)
T ss_pred             ceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEE
Confidence            87 777 899999986532         1222    267777778889 99999974

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.94  E-value=2.3e-25  Score=173.70  Aligned_cols=214  Identities=18%  Similarity=0.237  Sum_probs=141.7

Q ss_pred             CCcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCC---eEEEEeCcEee------------------------eeEE
Q psy15206          6 ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP---TISWRRNFKRL------------------------GRLH   58 (232)
Q Consensus         6 ~~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~---~~~W~~~~~~~------------------------~~~~   58 (232)
                      .+.|..+|.+....+.+..+.+|++++|.|.+.+.+++   .+.|+|++..+                        |.|+
T Consensus        79 ~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  158 (450)
T 1z7z_I           79 FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFS  158 (450)
T ss_dssp             EEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEE
T ss_pred             EEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCceEE
Confidence            45566688777543677889999999999999998777   89999965332                        4666


Q ss_pred             EEeeee--------------cCceeecCCcEEecCCCCc---eEeecCCcEEEEeeeccC-C--CCeEEEEeCCeeeCCC
Q psy15206         59 LAIPYT--------------SPEAQVDTPPVILNNSPQL---SVAKEGQSVQLECHAEGH-P--IPTISWRRENNAILPN  118 (232)
Q Consensus        59 ~~~~~~--------------~~~l~v~~~p~~~~~~~~~---~~~~~g~~~~l~C~~~~~-~--~~~~~W~~~~~~~~~~  118 (232)
                      |.....              ...+.+...+   ...+..   ..+.+|+.+.|.|.+.+. |  .+.+.|++++..+.. 
T Consensus       159 C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~---~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~-  234 (450)
T 1z7z_I          159 CRTELDLRPQGLELFENTSAPYQLQTFVLP---ATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-  234 (450)
T ss_dssp             EEEEEECGGGTSCEEEEECCCEECEECCCC---SSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC-
T ss_pred             EEEEcccCCCCceEEeeccCccceeeeccC---CCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc-
Confidence            665332              1122222110   001111   567789999999999987 6  678999999988654 


Q ss_pred             CcEEeeCCeEEEC---CCCCCCCe--EEEEEeEeCCCCceeeEEEEEEEe--ccEEEeccceeeeeccCeEEEEEEeecC
Q psy15206        119 GQTIFTGSTLQIP---RITKEDRG--AYYCVAQNGIGRGARRKIEVKVEF--APIVTVQSTRIGQALHHDMDLDCHIEAY  191 (232)
Q Consensus       119 ~~~~~~~~~l~i~---~~~~~~~g--~y~C~~~~~~~~~~~~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~  191 (232)
                       ........+.+.   ++..+|.|  .|.|.+.+..+. ......+.|..  +|.+...  ...+.+|+.+.|.|.+.  
T Consensus       235 -~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~-~~~~~~l~V~~~~~p~i~~~--~~~v~~G~~v~l~C~~~--  308 (450)
T 1z7z_I          235 -TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QETLQTVTIYSFPAPNVILT--KPEVSEGTEVTVKCEAH--  308 (450)
T ss_dssp             -EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEE-EEEEEEEEEECCCCCEEEES--CSEEETTCEEEEEEEC---
T ss_pred             -eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCcc-EEEEEEEEEecCCCCeEecC--CeeEeCCCcEEEEEecC--
Confidence             233333333332   67899999  999999998765 44566777776  5555433  44788999999999997  


Q ss_pred             CCCeEEEeeCCEEe-cCCCeEEEEEeccccCCceEEEEecC
Q psy15206        192 PHPILYWAKDGEIV-VNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       192 p~~~~~W~~~g~~~-~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.+.+.|  +|..+ ..+.+..|.+..+...|+|.|+|.|.
T Consensus       309 p~p~i~W--~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  347 (450)
T 1z7z_I          309 PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSAT  347 (450)
T ss_dssp             -----------------CCCCCEEEECCGGGTTCEEEEEEE
T ss_pred             CCCEeEE--CCEEcCCCCceEEEEEecCcccCCceEEEEEE
Confidence            8889999  77776 34456678888899999999999984

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.94  E-value=9.3e-25  Score=153.72  Aligned_cols=158  Identities=23%  Similarity=0.409  Sum_probs=125.1

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-----eCCeEEECCC-CCCCCeEEEEEe
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----TGSTLQIPRI-TKEDRGAYYCVA  145 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-----~~~~l~i~~~-~~~~~g~y~C~~  145 (232)
                      .+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+........     ....|.|.++ ..+|.|.|+|.+
T Consensus         5 ~~P~~~~-~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a   83 (212)
T 2yd6_A            5 TPPRFTR-TPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA   83 (212)
T ss_dssp             EEEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred             CCCeEEe-CcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence            4555554 56667888999999999999989899999999988765433222     1346999999 499999999999


Q ss_pred             EeCCCCceeeEEEEEEEec-------cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC----------
Q psy15206        146 QNGIGRGARRKIEVKVEFA-------PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND----------  208 (232)
Q Consensus       146 ~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~----------  208 (232)
                      .+..+. ....+.+.|...       |.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+...          
T Consensus        84 ~n~~g~-~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~  162 (212)
T 2yd6_A           84 SNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR  162 (212)
T ss_dssp             EETTEE-EEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE
T ss_pred             EcCCCc-EEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe
Confidence            998776 556777777654       66777777777888999999999999999999999999877643          


Q ss_pred             --CeEEEEEeccccCCceEEEEecC
Q psy15206        209 --EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 --~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                        ....|.+.++...|+|.|+|.|.
T Consensus       163 ~~~~~~L~i~~~~~~d~G~Y~C~a~  187 (212)
T 2yd6_A          163 SESIGALQIEQSEESDQGKYECVAT  187 (212)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCeEEEEEcCCCcccCEEEEEEEE
Confidence              23567778888999999999974

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.94  E-value=1.2e-24  Score=149.47  Aligned_cols=150  Identities=20%  Similarity=0.412  Sum_probs=125.3

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee------CCeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------GSTLQIPRITKEDRGAYYCVAQNGIGRGA  153 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~~~~~~~  153 (232)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.........      .+.|.|.++..+|.|.|.|.+.+..+...
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~   87 (182)
T 1rhf_A            8 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   87 (182)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             CCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEE
Confidence            556677889999999999999888899999999887654332221      25799999999999999999998766545


Q ss_pred             eeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecCC--CeEEEEEeccccCCceEEEEec
Q psy15206        154 RRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVND--EYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       154 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~~--~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      ...+.+.|..+|.+...+....+..|+.+.|.|.+.|.|.| .+.|+++|..+...  ....+.+.++  .|+|.|+|.|
T Consensus        88 ~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a  165 (182)
T 1rhf_A           88 SQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--TQSTMFSCEA  165 (182)
T ss_dssp             CCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCC--SSCEEEEEEE
T ss_pred             EEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCCCceEEEEecc--ccCeEEEEEE
Confidence            67788999999999888888888899999999999999999 99999999988654  4567777766  6899999997


Q ss_pred             C
Q psy15206        231 P  231 (232)
Q Consensus       231 ~  231 (232)
                      .
T Consensus       166 ~  166 (182)
T 1rhf_A          166 H  166 (182)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.93  E-value=2e-24  Score=149.76  Aligned_cols=157  Identities=24%  Similarity=0.406  Sum_probs=125.1

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--c--EEee--CCeEEECCCCCCCCeEEEEEeE
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--Q--TIFT--GSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~--~~~~--~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      +|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  +  ....  ...|.|.++...|.|.|+|.+.
T Consensus         5 ~P~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            5 APTFTQ-PLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEc-cCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            444443 5666788899999999999988888999999998775432  1  1222  2479999999999999999999


Q ss_pred             eCCCCceeeEEEEEEE---eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeE---------EEE
Q psy15206        147 NGIGRGARRKIEVKVE---FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH---------SIS  214 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~---------~~~  214 (232)
                      +..+. ......+.|.   .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....++         .+.
T Consensus        84 n~~~~-~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~  162 (194)
T 2a38_A           84 NGSGQ-ATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLL  162 (194)
T ss_dssp             ETTEE-EEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEE
T ss_pred             cCCce-EeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEE
Confidence            87765 4455667776   5677777777778889999999999999999999999999887654433         566


Q ss_pred             EeccccCCceEEEEecC
Q psy15206        215 NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       215 ~~~~~~~d~g~Y~C~~~  231 (232)
                      +.++...|+|.|+|.|.
T Consensus       163 i~~~~~~d~G~Y~C~a~  179 (194)
T 2a38_A          163 IAEAYPEDSGTYSVNAT  179 (194)
T ss_dssp             EEEECGGGCEEEEEEEE
T ss_pred             ECCCChhcCeEEEEEEE
Confidence            77788899999999974

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.93  E-value=4.5e-24  Score=150.20  Aligned_cols=159  Identities=25%  Similarity=0.473  Sum_probs=128.2

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeC-CCCcEEee---C--CeEEECCCCC-CCCeEEEEE
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL-PNGQTIFT---G--STLQIPRITK-EDRGAYYCV  144 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~-~~~~~~~~---~--~~l~i~~~~~-~~~g~y~C~  144 (232)
                      .+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++...   +  ..|.|.++.. .|.|.|+|.
T Consensus         5 ~pP~~~~-~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            5 HPPEIIR-KPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             CCCEEEE-CCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCCEEEc-CCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence            3555554 5667788899999999999998989999999998875 23333221   2  4799999999 999999999


Q ss_pred             eEeCCCCceeeEEEEEEEec-------cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-CeE-----
Q psy15206        145 AQNGIGRGARRKIEVKVEFA-------PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-EYH-----  211 (232)
Q Consensus       145 ~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~~-----  211 (232)
                      +.+..+......+.+.|...       |.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+... .++     
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~  163 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG  163 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETT
T ss_pred             EEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCC
Confidence            99987764567778888765       77777777778888999999999999999999999999887642 222     


Q ss_pred             EEEEeccccCCceEEEEecC
Q psy15206        212 SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       212 ~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+.++...|+|.|+|.|.
T Consensus       164 ~L~i~~v~~~d~G~Y~C~a~  183 (212)
T 2yd1_A          164 FLQIENSREEDQGKYECVAE  183 (212)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eEEEccCChhhCEEEEEEee
Confidence            57777888899999999974

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.93  E-value=1.7e-24  Score=153.03  Aligned_cols=147  Identities=22%  Similarity=0.285  Sum_probs=127.3

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...     ....|.|.++...|.|.|+|.+.+..+......+.+
T Consensus        24 ~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l   98 (218)
T 3k0w_A           24 NPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQL   98 (218)
T ss_dssp             CCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-----CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEE
T ss_pred             CCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-----CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEE
Confidence            566778889999999999999888999999999876543     246899999999999999999999876544556777


Q ss_pred             EEEec---------------cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCce
Q psy15206        160 KVEFA---------------PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       160 ~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g  224 (232)
                      .|...               |.+...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+.......+.+.++...|+|
T Consensus        99 ~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G  178 (218)
T 3k0w_A           99 DVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQG  178 (218)
T ss_dssp             EEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCE
T ss_pred             EEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCCCEEEEeecChhcCE
Confidence            77654               677777777888899999999999999999999999999998887888999999999999


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      .|+|.|.
T Consensus       179 ~Y~C~a~  185 (218)
T 3k0w_A          179 TYWCHVY  185 (218)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999874

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=150.84  Aligned_cols=150  Identities=21%  Similarity=0.337  Sum_probs=123.8

Q ss_pred             CCCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCc--EEee-----------CCeEEECCCCCCCCeEEEEEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQ--TIFT-----------GSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~--~~~~-----------~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      .+....+.+|+.+.|.|.+. +.|.+.+.|++++..+.....  ....           .+.|.|.++...|.|.|.|.+
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   87 (195)
T 2c5d_C            8 NPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV   87 (195)
T ss_dssp             CCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEE
T ss_pred             ChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEE
Confidence            56677888999999999998 888889999999988765421  1111           357999999999999999999


Q ss_pred             EeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecCC----CeEEEEEecccc
Q psy15206        146 QNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVND----EYHSISNFGTSE  220 (232)
Q Consensus       146 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~~----~~~~~~~~~~~~  220 (232)
                      .+..+......+.+.|..+|.+...+....+..|+.+.|.|.+.|.|.+ .+.|+++|..+...    ....+.+.++. 
T Consensus        88 ~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~-  166 (195)
T 2c5d_C           88 FLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN-  166 (195)
T ss_dssp             EETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSCCEEEEECCCS-
T ss_pred             EeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCCCCeEEEcccc-
Confidence            9976654455588889899998888888888899999999999999999 99999999887643    45667777665 


Q ss_pred             CCceEEEEecC
Q psy15206        221 GTTGSLQCKVP  231 (232)
Q Consensus       221 ~d~g~Y~C~~~  231 (232)
                       |+|.|+|.|.
T Consensus       167 -d~G~Y~C~a~  176 (195)
T 2c5d_C          167 -KTSSFSCEAH  176 (195)
T ss_dssp             -SCEEEEEEEE
T ss_pred             -cCceEEEEEE
Confidence             8899999974

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.93  E-value=4.3e-24  Score=171.56  Aligned_cols=209  Identities=19%  Similarity=0.279  Sum_probs=149.4

Q ss_pred             CcceEeecCCeEEEEEEecCCC-C-CeEEEE-eCcE-----------------------------------------eee
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP-I-PTISWR-RNFK-----------------------------------------RLG   55 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p-~-~~~~W~-~~~~-----------------------------------------~~~   55 (232)
                      +..+.+.+|++++|.|.+.+.+ . +.+.|+ +++.                                         +.|
T Consensus       224 p~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G  303 (585)
T 2ocw_A          224 PELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAG  303 (585)
T ss_pred             CceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCE
Confidence            4556688999999999985422 2 688896 5441                                         013


Q ss_pred             eEEEEeee----------ecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeE----EEEe--CCe--eeCC
Q psy15206         56 RLHLAIPY----------TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTI----SWRR--ENN--AILP  117 (232)
Q Consensus        56 ~~~~~~~~----------~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~----~W~~--~~~--~~~~  117 (232)
                      .|.|....          ..+.|.|..+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+    .|++  ++.  .+..
T Consensus       304 ~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~-~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~  382 (585)
T 2ocw_A          304 RYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR-SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVD  382 (585)
T ss_pred             EEEEEEEcCCCccccCceeeEEEEEeccccccc-CCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeee
Confidence            45554422          234566766665543 456677889999999999999888876    7999  776  3321


Q ss_pred             ---------CCcEEe----eCC--eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeE
Q psy15206        118 ---------NGQTIF----TGS--TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDM  182 (232)
Q Consensus       118 ---------~~~~~~----~~~--~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~  182 (232)
                               ..+...    .++  +|.|.++..+|.|.|+|.+ |..+. ....+.|.|...|.....+....+..|+.+
T Consensus       383 ~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~-~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v  460 (585)
T 2ocw_A          383 SEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTL-WRTTVEIKIIEGEPNLKVPGNVTAVLGETL  460 (585)
T ss_pred             ecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCc-cceeEEEEEecCccccccCCceeEecCCcE
Confidence                     112222    123  3999999999999999998 76665 456677777764444344677788899999


Q ss_pred             EEEEEee----cCCCCeEEEeeCCEEecCC----------------CeEEEEEeccccCCceEEEEecC
Q psy15206        183 DLDCHIE----AYPHPILYWAKDGEIVVND----------------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       183 ~l~C~~~----~~p~~~~~W~~~g~~~~~~----------------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.|.+.    +.|.+.|.|+|+|..+...                ....|.+.++..+|+|.|+|.|.
T Consensus       461 ~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  529 (585)
T 2ocw_A          461 KVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVK  529 (585)
T ss_pred             EEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeE
Confidence            9999986    7778899999999765321                12578888899999999999984

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.93  E-value=2.1e-24  Score=149.45  Aligned_cols=158  Identities=23%  Similarity=0.391  Sum_probs=129.1

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC-CCcEEe--eCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP-NGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +|.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..+...  .+..|.|.++...|.|.|.|.+.+..
T Consensus         7 ~P~i~-~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   85 (192)
T 2iep_A            7 APVIT-TPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGV   85 (192)
T ss_dssp             EEEES-SCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSS
T ss_pred             Cceee-cCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCC
Confidence            34443 356667788999999999999888889999999987754 223322  34579999999999999999999987


Q ss_pred             CCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeE------EEEEeccccCCc
Q psy15206        150 GRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH------SISNFGTSEGTT  223 (232)
Q Consensus       150 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~------~~~~~~~~~~d~  223 (232)
                      +........+.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....++      .+.+.++...|+
T Consensus        86 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  165 (192)
T 2iep_A           86 GGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDA  165 (192)
T ss_dssp             SCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGC
T ss_pred             CceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhC
Confidence            76566677888888898888777788889999999999999999999999999887655433      466777888999


Q ss_pred             eEEEEecC
Q psy15206        224 GSLQCKVP  231 (232)
Q Consensus       224 g~Y~C~~~  231 (232)
                      |.|+|.|.
T Consensus       166 G~Y~C~a~  173 (192)
T 2iep_A          166 GQYRCVAK  173 (192)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999974

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.93  E-value=5.8e-24  Score=147.09  Aligned_cols=154  Identities=18%  Similarity=0.350  Sum_probs=123.8

Q ss_pred             CcEEecCCCCceEeec-CCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         73 PPVILNNSPQLSVAKE-GQSVQLECHAEGHPI--PTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +|.+..  +....+.+ |+.+.|.|.+.+.+.  +.+.|++++..+...... ..+..|.|.++..+|.|.|.|.+.+. 
T Consensus         3 ~P~i~~--~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~-   78 (190)
T 2wv3_A            3 EPRIVT--SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKN-ASNMEYRINKPRAEDSGEYHCVYHFV-   78 (190)
T ss_dssp             CCEEEE--CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBC-CSEEEEEESSCCGGGCEEEEEEEEET-
T ss_pred             CCcccc--cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceE-eccEEEEEecCCcccCEEEEEEEEeC-
Confidence            455543  33345556 999999999988776  789999999887544322 24568999999999999999999998 


Q ss_pred             CCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEee--CCEEec---CCCe---------EEEEE
Q psy15206        150 GRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAK--DGEIVV---NDEY---------HSISN  215 (232)
Q Consensus       150 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~--~g~~~~---~~~~---------~~~~~  215 (232)
                      +. ....+.+.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++  +|..+.   ...+         ..|.+
T Consensus        79 ~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i  157 (190)
T 2wv3_A           79 SA-PKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNI  157 (190)
T ss_dssp             TE-EEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEE
T ss_pred             Cc-ccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEE
Confidence            54 667888999999999888888889999999999999999999999999  777654   2222         35777


Q ss_pred             eccc-cCCceEEEEecC
Q psy15206        216 FGTS-EGTTGSLQCKVP  231 (232)
Q Consensus       216 ~~~~-~~d~g~Y~C~~~  231 (232)
                      .++. ..|+|.|+|.|.
T Consensus       158 ~~~~~~~d~G~Y~C~a~  174 (190)
T 2wv3_A          158 VNLQITEDPGEYECNAT  174 (190)
T ss_dssp             CSCCTTTSCEEEEEEEE
T ss_pred             EeccccCCCEEEEEEEE
Confidence            7888 699999999874

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.93  E-value=5.3e-25  Score=170.98  Aligned_cols=208  Identities=13%  Similarity=0.189  Sum_probs=140.1

Q ss_pred             CcceEeecCCeEEEEEEecCCCC----CeEEEEeCc--E---------------------------------------ee
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPI----PTISWRRNF--K---------------------------------------RL   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~----~~~~W~~~~--~---------------------------------------~~   54 (232)
                      |.++.+.+|++++|.|.+.+.+.    +.+.|+|+.  .                                       +.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (438)
T 1qgc_4            8 PASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDV   87 (438)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCC
Confidence            67888999999999999988765    489999942  1                                       01


Q ss_pred             eeEEEEeeee-------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeCCeeeCCCCc--
Q psy15206         55 GRLHLAIPYT-------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRENNAILPNGQ--  120 (232)
Q Consensus        55 ~~~~~~~~~~-------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~~~~~--  120 (232)
                      |.|.|.....       ...|.|..   +|.+....+. ....+|..+.|.|.+.+ .|.+ .+.|+++|..+.....  
T Consensus        88 G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  166 (438)
T 1qgc_4           88 ATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS  166 (438)
T ss_dssp             EEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEE
T ss_pred             eeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCC-hhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceec
Confidence            2445544221       23445432   3433321222 12235789999999987 6666 8999999987754311  


Q ss_pred             ---------EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE--eccEEEeccceeeeeccCeEEEEEEee
Q psy15206        121 ---------TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE--FAPIVTVQSTRIGQALHHDMDLDCHIE  189 (232)
Q Consensus       121 ---------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~--~~p~~~~~~~~~~~~~g~~~~l~C~~~  189 (232)
                               .....+.|.|.++..+|.|.|+|.+.|..+..   .+.+.+.  .++.....+....+..|+.+.|.|.+.
T Consensus       167 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~  243 (438)
T 1qgc_4          167 WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS---PIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTAS  243 (438)
T ss_dssp             EECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS---CEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEE
T ss_pred             cccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC---ceecccccccceeEEecCCceEEecCCcEEEEEEEc
Confidence                     11113478999999999999999999976652   1222332  122233345566788999999999999


Q ss_pred             cCC--CCeEEEeeC--CEEec----------------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        190 AYP--HPILYWAKD--GEIVV----------------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       190 ~~p--~~~~~W~~~--g~~~~----------------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.|  .+.+.|+|+  |..+.                            ......|.+.++..+|+|.|.|.|.
T Consensus       244 g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  317 (438)
T 1qgc_4          244 GFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRR  317 (438)
T ss_dssp             SSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEEC
T ss_pred             ccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEE
Confidence            998  568999996  43221                            0124477888889999999999985

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.93  E-value=7e-25  Score=170.31  Aligned_cols=218  Identities=18%  Similarity=0.296  Sum_probs=142.1

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecC-CCCC-eEEEEeCcEee----------------------------------
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIP-TISWRRNFKRL----------------------------------   54 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~-~p~~-~~~W~~~~~~~----------------------------------   54 (232)
                      .+|.+... +....+.+|+.++|.|.+.+ .|.+ .+.|++++..+                                  
T Consensus       115 ~~P~v~~~-~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  193 (438)
T 1qgc_4          115 AAPTVSIF-PPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH  193 (438)
T ss_dssp             BCCEEEEE-CCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred             CCCEEEec-CCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCC
Confidence            37777765 33334457889999999987 6766 89999965332                                  


Q ss_pred             eeEEEEeeee--c--CceeecC--CcEEecCCCCceEeecCCcEEEEeeeccCC--CCeEEEEeC--CeeeC--------
Q psy15206         55 GRLHLAIPYT--S--PEAQVDT--PPVILNNSPQLSVAKEGQSVQLECHAEGHP--IPTISWRRE--NNAIL--------  116 (232)
Q Consensus        55 ~~~~~~~~~~--~--~~l~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~~--------  116 (232)
                      |.|+|.....  .  +.+.+..  ++.... .+....+.+|+.+.|.|.+.|.|  .+.+.|+++  +..+.        
T Consensus       194 G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~  272 (438)
T 1qgc_4          194 NSYTCEATHKTSTSPIVKSFNRNECEVMLV-ESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSG  272 (438)
T ss_dssp             CEEEEEEEETTCSSCEEEEEETTC-CCEEE-EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTT
T ss_pred             CeEEEEEEecccCCceecccccccceeEEe-cCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeec
Confidence            2344443222  1  2222221  112221 23456788899999999999887  568999986  43321        


Q ss_pred             ---------CCCcEEee------CCeEEECCCCCCCCeEEEEEeEeCCC--C--ceeeEEEEEEE----eccEEEeccce
Q psy15206        117 ---------PNGQTIFT------GSTLQIPRITKEDRGAYYCVAQNGIG--R--GARRKIEVKVE----FAPIVTVQSTR  173 (232)
Q Consensus       117 ---------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~~~~--~--~~~~~~~l~v~----~~p~~~~~~~~  173 (232)
                               ...++...      ...|.|.++..+|.|.|.|.+.|..+  .  .......+.|.    .+|.+...+..
T Consensus       273 ~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~  352 (438)
T 1qgc_4          273 GTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPG  352 (438)
T ss_dssp             SCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCC
T ss_pred             CCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcc
Confidence                     01222221      23799999999999999999998432  1  12233456665    35666554444


Q ss_pred             eeeeccCeEEEEEEeecC-CCC-eEEEeeCCEEec--------CCCeE----EEEEeccccCCceEEEEecC
Q psy15206        174 IGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEIVV--------NDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~~~--------~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+..|+.++|.|.+.|. |.+ .|.|+++|..+.        .++.+    .|.+......| |.|+|.|.
T Consensus       353 ~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~  423 (438)
T 1qgc_4          353 SAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVA  423 (438)
T ss_dssp             GGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEE
T ss_pred             cccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEE
Confidence            456689999999999997 877 899999986643        12333    35556666678 99999984

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.93  E-value=7.3e-25  Score=170.81  Aligned_cols=211  Identities=13%  Similarity=0.144  Sum_probs=149.7

Q ss_pred             eecCCCcceEeecCCeEEEEEEecCCCCCeE-----EEEeCcE-----------------eeeeEEEEeeee------cC
Q psy15206         15 ILNNSTQLSVAKEGQSVQLECHAEGHPIPTI-----SWRRNFK-----------------RLGRLHLAIPYT------SP   66 (232)
Q Consensus        15 i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~-----~W~~~~~-----------------~~~~~~~~~~~~------~~   66 (232)
                      |... |.+..+.+|++++|.|.+.+ |.+.+     .|+|++.                 +.+ |.|.....      .+
T Consensus         2 i~~~-P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~~~~~l~i~~v~~d~g-Y~C~a~~~~~~~~~~~   78 (450)
T 1z7z_I            2 TSVS-PSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQ-PMCYSNCPDGQSTAKT   78 (450)
T ss_dssp             CEEE-SSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTTTEEEEEEEEECSCBC-CEEEEEETTEEEEEEC
T ss_pred             cccC-CCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecCCCceEEEEEecccCCe-eEEEEeCCCCcceeEE
Confidence            3444 78889999999999999999 88888     8998543                 223 77766322      46


Q ss_pred             ceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCCCCcE-EeeCCeEEECCCCCCCCeEEE
Q psy15206         67 EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP---TISWRRENNAILPNGQT-IFTGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        67 ~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~  142 (232)
                      .|.|..+|......+....+.+|+.+.|.|.+.+.+++   .+.|++++..+...... ......|.|.++..+|.|.|+
T Consensus        79 ~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  158 (450)
T 1z7z_I           79 FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFS  158 (450)
T ss_dssp             EEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEE
T ss_pred             EEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCceEE
Confidence            77777777665445555678899999999999998877   89999999876422110 111347999999999999999


Q ss_pred             EEeEeCCCCce-------eeEEEEEEEec----cEEEeccceeeeeccCeEEEEEEeecC-C--CCeEEEeeCCEEecC-
Q psy15206        143 CVAQNGIGRGA-------RRKIEVKVEFA----PIVTVQSTRIGQALHHDMDLDCHIEAY-P--HPILYWAKDGEIVVN-  207 (232)
Q Consensus       143 C~~~~~~~~~~-------~~~~~l~v~~~----p~~~~~~~~~~~~~g~~~~l~C~~~~~-p--~~~~~W~~~g~~~~~-  207 (232)
                      |.+.|..+...       .....+.+...    |.+..   ...+..|+.+.|.|.+.|. |  .+.+.|+++|..+.. 
T Consensus       159 C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~  235 (450)
T 1z7z_I          159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT  235 (450)
T ss_dssp             EEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCE
T ss_pred             EEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCce
Confidence            99998755311       12233333322    22221   1567889999999999998 6  678999999987653 


Q ss_pred             ----CCeEEEE-EeccccCCce--EEEEecC
Q psy15206        208 ----DEYHSIS-NFGTSEGTTG--SLQCKVP  231 (232)
Q Consensus       208 ----~~~~~~~-~~~~~~~d~g--~Y~C~~~  231 (232)
                          .+...+. ..++...|+|  .|.|.+.
T Consensus       236 ~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~  266 (450)
T 1z7z_I          236 VTYGNDSFSAKASVSVTAEDEGTQRLTCAVI  266 (450)
T ss_dssp             EEEETTEEEEEEEEECCGGGCEEEEEEEEEE
T ss_pred             EEecCCceeEEEEEEeEhhhCCcEEEEEEEc
Confidence                1222222 2255779999  9999874

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.93  E-value=4e-24  Score=148.64  Aligned_cols=157  Identities=18%  Similarity=0.339  Sum_probs=123.8

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC-cEEe---eCC--eEEECCCCCCCCeEEEEEeE
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIF---TGS--TLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~---~~~--~l~i~~~~~~~~g~y~C~~~  146 (232)
                      +|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... +...   .++  .|.|.++..+|.|.|+|.+.
T Consensus         4 ~P~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            4 APHFKE-ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCEEEE-CCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCEEEE-cCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            455544 4566788899999999999998889999999998875432 2222   122  89999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEeccEEEecc-----ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EE
Q psy15206        147 NGIGRGARRKIEVKVEFAPIVTVQS-----TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HS  212 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p~~~~~~-----~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~  212 (232)
                      +..+. ....+.+.|..+|.+....     ....+..|+.+.|.|.+.|.|.+.+.|+++|..+....+         ..
T Consensus        83 n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~  161 (197)
T 2j8h_A           83 NQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS  161 (197)
T ss_dssp             ETTEE-EEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEE
T ss_pred             ECCCc-eeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceE
Confidence            98766 5677788888777654322     345677899999999999999999999999988765433         35


Q ss_pred             EEEec-cccCCceEEEEecC
Q psy15206        213 ISNFG-TSEGTTGSLQCKVP  231 (232)
Q Consensus       213 ~~~~~-~~~~d~g~Y~C~~~  231 (232)
                      +.+.+ +...|+|.|+|.|.
T Consensus       162 L~i~~~~~~~d~G~Y~C~a~  181 (197)
T 2j8h_A          162 LVFPNGVERKDAGFYVVCAK  181 (197)
T ss_dssp             EECTTCCCGGGCEEEEEEEE
T ss_pred             EEEeCCCCcccCEeEEEEEE
Confidence            56667 88899999999874

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.93  E-value=1.5e-23  Score=168.36  Aligned_cols=216  Identities=18%  Similarity=0.311  Sum_probs=153.7

Q ss_pred             CCcccCCCeeecCCCcceEeecCCeEEEEEEecC-CCCCeEEEEeCcEe----------------ee-------------
Q psy15206          6 ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFKR----------------LG-------------   55 (232)
Q Consensus         6 ~~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~-~p~~~~~W~~~~~~----------------~~-------------   55 (232)
                      .+.|..+|.+... +.+..+.+|++++|.|.+.+ .+.+.+.|+|++..                .+             
T Consensus       106 ~l~V~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  184 (585)
T 2ocw_A          106 SLEVSQGPGLLND-TKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLL  184 (585)
T ss_pred             EEEEecCccccCC-CccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcE
Confidence            4567788988777 88899999999999999996 45678999996431                11             


Q ss_pred             --------------eEEEEeeee------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCC---CeEEEE-eC
Q psy15206         56 --------------RLHLAIPYT------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI---PTISWR-RE  111 (232)
Q Consensus        56 --------------~~~~~~~~~------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W~-~~  111 (232)
                                    .|+|.....      .+.|.|..+      .+....+.+|+.+.|.|.+ +.+.   +.+.|+ ++
T Consensus       185 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~------~p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w~~~~  257 (585)
T 2ocw_A          185 FSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP------EPELVYEDLRGSVTFHCAL-GPEVANVAKFLCRQSS  257 (585)
T ss_pred             EEEEEccCChhHCeEEEEEeccCCccccceEEEEEccC------CCceeEEcCCCcEEEEEEc-CCCCCCceEEEEEeCC
Confidence                          233322111      333444332      2334556789999999997 4343   568886 77


Q ss_pred             Cee---eCC---------CCcEEee----CC--eEEECCCCCCCCeEEEEEeEeCCCCce----eeEEEEEEEeccEEEe
Q psy15206        112 NNA---ILP---------NGQTIFT----GS--TLQIPRITKEDRGAYYCVAQNGIGRGA----RRKIEVKVEFAPIVTV  169 (232)
Q Consensus       112 ~~~---~~~---------~~~~~~~----~~--~l~i~~~~~~~~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~  169 (232)
                      +..   +..         ..+....    ++  .|.|.++..+|.|.|+|.+.|. +...    ...+.|.|..+|.+..
T Consensus       258 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~  336 (585)
T 2ocw_A          258 GENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPR  336 (585)
T ss_pred             CCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEeccccccc
Confidence            631   111         1222221    23  6999999999999999999985 3322    2677888888888887


Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeE----EEee--CCE--EecC--------------------CCeEEEEEeccccC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPIL----YWAK--DGE--IVVN--------------------DEYHSISNFGTSEG  221 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~----~W~~--~g~--~~~~--------------------~~~~~~~~~~~~~~  221 (232)
                      .+....+..|+.+.|.|.+.+.|.+.+    .|++  +|.  .+..                    ...+.|.+.++...
T Consensus       337 ~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~  416 (585)
T 2ocw_A          337 SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSR  416 (585)
T ss_pred             CCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChh
Confidence            788888889999999999999999876    7999  876  3321                    12345778888999


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |+|.|+|.|
T Consensus       417 D~G~Y~C~a  425 (585)
T 2ocw_A          417 DAGFYWCLT  425 (585)
T ss_pred             hCEEEEEcc
Confidence            999999986

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.93  E-value=4.5e-25  Score=164.98  Aligned_cols=220  Identities=15%  Similarity=0.184  Sum_probs=137.6

Q ss_pred             cCCCeeecCCCcceEeecC--CeEEEEEEecCC-C-CCeEEEEeCcEee-------------------------------
Q psy15206         10 DTPPVILNNSTQLSVAKEG--QSVQLECHAEGH-P-IPTISWRRNFKRL-------------------------------   54 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G--~~v~l~C~~~~~-p-~~~~~W~~~~~~~-------------------------------   54 (232)
                      ..+|.+... +.......|  ++++|.|.+.+. | .+.|+|+|++..+                               
T Consensus         5 ~~~P~v~~~-~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d   83 (323)
T 2wqr_A            5 FTPPTVKIL-QSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLS   83 (323)
T ss_dssp             CCCCCCEEE-EECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHT
T ss_pred             CCCCEEEEe-CCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCC
Confidence            457888877 333333344  699999999984 4 5799999965432                               


Q ss_pred             -eeEEEEeeeec----Ccee-----ecCCcEEecCCCCceEeecCCcEEEEeeeccC-CCC---eEEEEeCCeeeCCC-C
Q psy15206         55 -GRLHLAIPYTS----PEAQ-----VDTPPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP---TISWRRENNAILPN-G  119 (232)
Q Consensus        55 -~~~~~~~~~~~----~~l~-----v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~---~~~W~~~~~~~~~~-~  119 (232)
                       |.|+|......    ..+.     ....|......+....+..|+.+.|.|.+.+. |.+   .+.|++++...... .
T Consensus        84 ~g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~  163 (323)
T 2wqr_A           84 DRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHST  163 (323)
T ss_dssp             TCCEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCC
T ss_pred             CCcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccccc
Confidence             23444432211    1111     11123333333444456689999999999885 445   89999975333221 1


Q ss_pred             cE--------EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE----EEeccEEEeccceeeeeccCeEEEEEE
Q psy15206        120 QT--------IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK----VEFAPIVTVQSTRIGQALHHDMDLDCH  187 (232)
Q Consensus       120 ~~--------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~~~~~g~~~~l~C~  187 (232)
                      ..        ....+.|.|.++..+|.|.|+|.+.|..+. ......+.    +..+|.+...+.......|+.++|.|.
T Consensus       164 ~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~  242 (323)
T 2wqr_A          164 RKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLP-RALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACL  242 (323)
T ss_dssp             CEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSS-SCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEE
T ss_pred             CCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCC-CCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEE
Confidence            11        112346999999999999999999987533 11122222    235677665443322234999999999


Q ss_pred             eecC-CCC-eEEEeeCCEEecCC------------CeE----EEEEeccccCCceEEEEecC
Q psy15206        188 IEAY-PHP-ILYWAKDGEIVVND------------EYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       188 ~~~~-p~~-~~~W~~~g~~~~~~------------~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|. |.+ .|.|+|||..+...            +.+    .|.+......|+|.|+|.|.
T Consensus       243 ~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~  304 (323)
T 2wqr_A          243 IQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAV  304 (323)
T ss_dssp             EEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEE
T ss_pred             eeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEE
Confidence            9884 433 79999999876532            122    35555667789999999974

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.93  E-value=2.7e-24  Score=148.82  Aligned_cols=152  Identities=20%  Similarity=0.322  Sum_probs=123.9

Q ss_pred             CCCceEeecCCcEEEEeeeccCC-CCeEEEEe-CCeeeCC-CCcEEe-----eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP-IPTISWRR-ENNAILP-NGQTIF-----TGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~-~~~~~~~-~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .+....+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+.. ..+...     ....|.|.++..+|.|.|.|.+.+..+.
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~   87 (191)
T 1epf_A            8 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGT   87 (191)
T ss_dssp             ESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTE
T ss_pred             cCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCc
Confidence            45567788999999999998876 67899999 7776652 223222     2358999999999999999999998754


Q ss_pred             ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC--Ce------EEEEEeccccCCc
Q psy15206        152 GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND--EY------HSISNFGTSEGTT  223 (232)
Q Consensus       152 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--~~------~~~~~~~~~~~d~  223 (232)
                      .....+.+.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+...  .+      -.|.+.++...|+
T Consensus        88 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  167 (191)
T 1epf_A           88 QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE  167 (191)
T ss_dssp             EEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGC
T ss_pred             ceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhC
Confidence            466778888888999888888888889999999999999999999999999887521  11      2567778888999


Q ss_pred             eEEEEecC
Q psy15206        224 GSLQCKVP  231 (232)
Q Consensus       224 g~Y~C~~~  231 (232)
                      |.|+|.|.
T Consensus       168 G~Y~C~a~  175 (191)
T 1epf_A          168 GTYRCEGR  175 (191)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999974

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.92  E-value=1e-24  Score=152.02  Aligned_cols=147  Identities=17%  Similarity=0.210  Sum_probs=111.0

Q ss_pred             eEeecCCcEEEEee---eccCCCCeEEEEeCCeeeCC-----------------CCcEE----eeCCeEEECCCCCCCCe
Q psy15206         84 SVAKEGQSVQLECH---AEGHPIPTISWRRENNAILP-----------------NGQTI----FTGSTLQIPRITKEDRG  139 (232)
Q Consensus        84 ~~~~~g~~~~l~C~---~~~~~~~~~~W~~~~~~~~~-----------------~~~~~----~~~~~l~i~~~~~~~~g  139 (232)
                      +++..|+.+.|.|.   +.+.|.+.+.|+++|.....                 ...+.    .....|.|.+++.+|+|
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   82 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG   82 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence            56778999999995   55678899999997643210                 00111    11236999999999999


Q ss_pred             EEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec------------C
Q psy15206        140 AYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV------------N  207 (232)
Q Consensus       140 ~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~------------~  207 (232)
                      .|.|.+.|..+. ....+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.            .
T Consensus        83 ~Y~C~a~n~~g~-~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~  161 (203)
T 4fa8_A           83 NYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK  161 (203)
T ss_dssp             EEEEEEEETTEE-EEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECT
T ss_pred             EEEEEEEcCCCc-EEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeC
Confidence            999999998776 566788888888888888888888899999999999999999999998754321            2


Q ss_pred             CCeE-EEEEeccccCCceEEEEecC
Q psy15206        208 DEYH-SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       208 ~~~~-~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++.+ .+.+.++..+|+|.|+|.|.
T Consensus       162 ~g~l~il~i~~v~~~D~G~YtC~A~  186 (203)
T 4fa8_A          162 DGSLSVAVDLSLPKPWHLPVTCVGK  186 (203)
T ss_dssp             TSCEEEEEEEEECSSCCCCEEEEEE
T ss_pred             CCCEEEEEECCCCHHHCEEEEEEEE
Confidence            2223 34456778899999999974

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.92  E-value=9.4e-24  Score=146.65  Aligned_cols=158  Identities=20%  Similarity=0.390  Sum_probs=124.1

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-CC---eEEECCCCCCCCeEEEEEeEe
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-GS---TLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~---~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+......... .+   .|.|.++..+|.|.|+|.+.+
T Consensus         6 ~~P~~~~-~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            6 EAPGIRK-EMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             EEEEEEE-CCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCcccc-cCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            3455544 566778889999999999988888899999999888655554333 22   799999999999999999998


Q ss_pred             CCCCceeeEEEEEEEeccEEEec---cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEE
Q psy15206        148 GIGRGARRKIEVKVEFAPIVTVQ---STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISN  215 (232)
Q Consensus       148 ~~~~~~~~~~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~  215 (232)
                      ..+. ......+.|..+|.+...   +....+..|+.+.|.|.+.+.|.+.+.|+++|..+....+         ..+.+
T Consensus        85 ~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i  163 (197)
T 3lcy_A           85 EVGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVM  163 (197)
T ss_dssp             SSCE-EEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEE
T ss_pred             CCCc-eeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEE
Confidence            7765 556677777777765432   3445677899999999999999999999999988875544         45566


Q ss_pred             ecccc-CCceEEEEecC
Q psy15206        216 FGTSE-GTTGSLQCKVP  231 (232)
Q Consensus       216 ~~~~~-~d~g~Y~C~~~  231 (232)
                      .++.. .|+|.|+|.|.
T Consensus       164 ~~~~~~~d~G~Y~C~a~  180 (197)
T 3lcy_A          164 KNVQRKTHAGKYKVQLS  180 (197)
T ss_dssp             SSCCHHHHCEEEEEEEE
T ss_pred             ccccchhhCceEEEEEE
Confidence            66663 79999999974

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.92  E-value=1.3e-23  Score=155.68  Aligned_cols=215  Identities=19%  Similarity=0.293  Sum_probs=150.3

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee-----------------------------eeEEEE
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-----------------------------GRLHLA   60 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~-----------------------------~~~~~~   60 (232)
                      ..+|.|... +.+..+.+|++++|.|.+.+.|.+.+.|++++..+                             |.|.|.
T Consensus         2 ~~~P~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            2 AMAPHFKEE-LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCCCEEEEC-CCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCCeeeec-ccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence            358999988 88999999999999999999999999999954322                             245554


Q ss_pred             eee------ecCceeecCCcEEecC----CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe----eCC
Q psy15206         61 IPY------TSPEAQVDTPPVILNN----SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGS  126 (232)
Q Consensus        61 ~~~------~~~~l~v~~~p~~~~~----~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~----~~~  126 (232)
                      ...      ....|.|..+|.+...    .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....+...    ...
T Consensus        81 a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~  160 (305)
T 2nzi_A           81 ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFT  160 (305)
T ss_dssp             EEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEE
T ss_pred             EEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCce
Confidence            422      1455666655544321    12445677899999999999999999999999887755444332    235


Q ss_pred             eEEECC-CCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEE----ec---cceee------eeccCeEEEEEEeecCC
Q psy15206        127 TLQIPR-ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT----VQ---STRIG------QALHHDMDLDCHIEAYP  192 (232)
Q Consensus       127 ~l~i~~-~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~----~~---~~~~~------~~~g~~~~l~C~~~~~p  192 (232)
                      .|.|.+ +...|.|.|+|.+.|..|. ....+.+.|...|...    ..   .....      ...|....+.|.+...+
T Consensus       161 ~l~i~~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~  239 (305)
T 2nzi_A          161 SLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCA  239 (305)
T ss_dssp             EEEETTCCCSTTCEEEEEEEEETTEE-EEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEE
T ss_pred             EEEEecCCccCccEEEEEEEEeCCCc-eeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEec
Confidence            789999 9999999999999998887 5566777777554311    10   01111      01234445566666666


Q ss_pred             CCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEec
Q psy15206        193 HPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       193 ~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      .+...|.+.+...    ...+.+.+....+.|.|+|.|
T Consensus       240 ~~~~~w~~~~~~~----~~~~~i~~l~~~~~y~~~~~A  273 (305)
T 2nzi_A          240 TTAERWLRVGQAR----ETRYTVINLFGKTSYQFRVIA  273 (305)
T ss_dssp             TTSCCEEEEEEES----SSEEEECSCCSSCEEEEEEEE
T ss_pred             CCCCccEECcccc----CceEEecCCCCCCeEEEEEEE
Confidence            6667787655433    335566678889999999987

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.92  E-value=4.4e-27  Score=194.36  Aligned_cols=224  Identities=21%  Similarity=0.334  Sum_probs=0.0

Q ss_pred             CCcccCCCeeecCC--CcceEeecCCeEEEEEEecCCCCCe-EEEEeCcE------------------------------
Q psy15206          6 ESQVDTPPVILNNS--TQLSVAKEGQSVQLECHAEGHPIPT-ISWRRNFK------------------------------   52 (232)
Q Consensus         6 ~~~~~~~P~i~~~~--~~~~~~~~G~~v~l~C~~~~~p~~~-~~W~~~~~------------------------------   52 (232)
                      .+.|..+|.+....  .+...+.+|+.++|.|.+.+.|.+. +.|++++.                              
T Consensus       414 ~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (772)
T 3v2a_R          414 SLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQG  493 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccC
Confidence            45667788875431  1223488999999999999988886 99998511                              


Q ss_pred             ------------------------------eeeeEEEEeeee------cCceeecCCcEEecCCCCceEeecCCcEEEEe
Q psy15206         53 ------------------------------RLGRLHLAIPYT------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLEC   96 (232)
Q Consensus        53 ------------------------------~~~~~~~~~~~~------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C   96 (232)
                                                    ..|.|.|.....      .+.+.|..+|.+.. .+. ..+.+|+.+.|.|
T Consensus       494 g~~i~~~~~~~~~~~~~~~~~~~L~i~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~-~p~-~~~~~G~~v~l~C  571 (772)
T 3v2a_R          494 GNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITL-QPD-MQPTEQESVSLWC  571 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcEEEeccceeeccCcceEEEEEEEeecccCeEEEEEEEccccccceeEEEEEECCceeec-cCC-cccccCCceEEEE
Confidence                                          113444443211      44555655554432 222 3466899999999


Q ss_pred             eeccCCCCeEEEEeCCeeeCCCCcEE---------------------e---eCCeEEECCCCCCCCeEEEEEeEeCCCC-
Q psy15206         97 HAEGHPIPTISWRRENNAILPNGQTI---------------------F---TGSTLQIPRITKEDRGAYYCVAQNGIGR-  151 (232)
Q Consensus        97 ~~~~~~~~~~~W~~~~~~~~~~~~~~---------------------~---~~~~l~i~~~~~~~~g~y~C~~~~~~~~-  151 (232)
                      .+.+.|.+.+.|++++..+.......                     .   ....|.|.++..+|.|.|.|.+.|..+. 
T Consensus       572 ~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  651 (772)
T 3v2a_R          572 TADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKK  651 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCe
Confidence            99999888999999886643211100                     0   0124999999999999999999985433 


Q ss_pred             ceee--EEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC-------eEEEEEeccccCC
Q psy15206        152 GARR--KIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE-------YHSISNFGTSEGT  222 (232)
Q Consensus       152 ~~~~--~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~-------~~~~~~~~~~~~d  222 (232)
                      ....  .+.+.+..+|.+...+.+..+..|+.+.|.|.+.|.|.|.|.|+|+|..+..+.       ...|.+.++..+|
T Consensus       652 ~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D  731 (772)
T 3v2a_R          652 RHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKED  731 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEECcCCHHH
Confidence            2222  333334678888777777788899999999999999999999999998776443       3466777888899


Q ss_pred             ceEEEEecC
Q psy15206        223 TGSLQCKVP  231 (232)
Q Consensus       223 ~g~Y~C~~~  231 (232)
                      +|.|+|.|.
T Consensus       732 ~G~Y~C~a~  740 (772)
T 3v2a_R          732 EGLYTCQAC  740 (772)
T ss_dssp             ---------
T ss_pred             CEEEEEEEE
Confidence            999999984

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.92  E-value=1.9e-23  Score=144.16  Aligned_cols=152  Identities=20%  Similarity=0.441  Sum_probs=116.2

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC--CCcE-EeeCCeEEECCCCCCCCeEEEEEeEeCCCC-ceee
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP--NGQT-IFTGSTLQIPRITKEDRGAYYCVAQNGIGR-GARR  155 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~--~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~  155 (232)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ..+. ...++.|.|.++..+|.|.|+|.+.+..+. ....
T Consensus         8 ~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~   87 (189)
T 2v5t_A            8 VVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFR   87 (189)
T ss_dssp             CCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEE
T ss_pred             cCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEE
Confidence            45667888999999999999888889999999877643  2222 234568999999999999999999987643 2345


Q ss_pred             EEEEEEEeccEEEeccc--eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeE-------EEEEeccccCCceEE
Q psy15206        156 KIEVKVEFAPIVTVQST--RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH-------SISNFGTSEGTTGSL  226 (232)
Q Consensus       156 ~~~l~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~-------~~~~~~~~~~d~g~Y  226 (232)
                      .+.+.+..+|.+...+.  ...+..|+.+.|.|.+.|.|.+.+.|+++|..+....++       .+.+.++...|+|.|
T Consensus        88 ~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  167 (189)
T 2v5t_A           88 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPY  167 (189)
T ss_dssp             EEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEE
T ss_pred             EEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeE
Confidence            66777777787765544  345667999999999999999999999999987755433       466777888999999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      +|.|.
T Consensus       168 ~C~a~  172 (189)
T 2v5t_A          168 VCRAT  172 (189)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99974

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.92  E-value=1.1e-22  Score=149.11  Aligned_cols=158  Identities=23%  Similarity=0.402  Sum_probs=128.7

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe----eCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........    ....|.|.++...|.|.|+|.+.+
T Consensus         4 ~pP~~~~-~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   82 (284)
T 2rik_A            4 APPFFDL-KPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN   82 (284)
T ss_dssp             CCCEEEE-CCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEc-cccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence            4565554 56677888999999999999988889999999988765544332    235799999999999999999999


Q ss_pred             CCCCceeeEEEEEEEeccEEEecc-ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEec
Q psy15206        148 GIGRGARRKIEVKVEFAPIVTVQS-TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFG  217 (232)
Q Consensus       148 ~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~  217 (232)
                      ..+. ....+.+.|..+|.+.... ....+..|+.+.|.|.+.|.|.+.+.|+++|..+.....         ..|.+.+
T Consensus        83 ~~g~-~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~  161 (284)
T 2rik_A           83 VAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYN  161 (284)
T ss_dssp             TTEE-EEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECS
T ss_pred             CCce-EEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECC
Confidence            8766 5677888888888876553 345678899999999999999999999999988765433         4577778


Q ss_pred             cccCCceEEEEecC
Q psy15206        218 TSEGTTGSLQCKVP  231 (232)
Q Consensus       218 ~~~~d~g~Y~C~~~  231 (232)
                      +...|+|.|+|.+.
T Consensus       162 ~~~~d~G~Y~C~a~  175 (284)
T 2rik_A          162 LSVEDSGDYTCEAH  175 (284)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCcccCEEEEEEEE
Confidence            88899999999874

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.92  E-value=1.1e-23  Score=148.03  Aligned_cols=153  Identities=19%  Similarity=0.350  Sum_probs=121.6

Q ss_pred             CCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeee------------CCCCcEEeeCCeEEECCCCCCCCeEEEEEeE
Q psy15206         79 NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI------------LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        79 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~------------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      ..+....+.+|+.+.|.|.+.+.+.+.+.|++++..+            ....+.......|.|.++...|.|.|+|.+.
T Consensus         6 ~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~   85 (212)
T 1f97_A            6 TAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVS   85 (212)
T ss_dssp             CSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEE
T ss_pred             ecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEE
Confidence            3566677889999999999998888899999987552            1233455556889999999999999999999


Q ss_pred             eCCCC-ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEE-eecCCCCeEEEeeCCE-EecCC---------------
Q psy15206        147 NGIGR-GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCH-IEAYPHPILYWAKDGE-IVVND---------------  208 (232)
Q Consensus       147 ~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~~~W~~~g~-~~~~~---------------  208 (232)
                      +..+. .....+.+.|..+|.+...+....+..|+.+.|.|. +.+.|.+.+.|+++|. .+...               
T Consensus        86 ~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~  165 (212)
T 1f97_A           86 EEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID  165 (212)
T ss_dssp             ETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEEC
T ss_pred             ccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEec
Confidence            97653 245677888888887655555567889999999999 7999999999999998 65431               


Q ss_pred             -CeEEEEEeccccCCceEEEEecC
Q psy15206        209 -EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 -~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                       ....+.+.++..+|+|.|+|.|.
T Consensus       166 ~~~~~L~i~~~~~~d~G~Y~C~a~  189 (212)
T 1f97_A          166 PKSGDLIFDPVTAFDSGEYYCQAQ  189 (212)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceEEEEecChhhCcEEEEEEc
Confidence             23456777888899999999974

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.91  E-value=3.7e-24  Score=166.61  Aligned_cols=219  Identities=18%  Similarity=0.232  Sum_probs=138.7

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCC-CCC-eEEEEeCcEee-----------------------------eeEEEE
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGH-PIP-TISWRRNFKRL-----------------------------GRLHLA   60 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~-p~~-~~~W~~~~~~~-----------------------------~~~~~~   60 (232)
                      +|.+... ++...+.+|++++|.|.+.+. |.+ .+.|++++...                             |.|.|.
T Consensus       123 ~P~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dg~Y~C~  201 (444)
T 1igt_B          123 APSVYPL-APVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCN  201 (444)
T ss_dssp             CCEEEEE-CCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTTSCCEEE
T ss_pred             CCceeEe-cccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCCCeEEEE
Confidence            5666544 233345899999999999974 665 99999854321                             345555


Q ss_pred             eeeec----C--cee------------------ecCCcEEecCCCCceE-eecCCcEEEEeeeccCC----CCeEEEEeC
Q psy15206         61 IPYTS----P--EAQ------------------VDTPPVILNNSPQLSV-AKEGQSVQLECHAEGHP----IPTISWRRE  111 (232)
Q Consensus        61 ~~~~~----~--~l~------------------v~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~----~~~~~W~~~  111 (232)
                      .....    .  .+.                  +..+|.+....+.... +..|+.+.|.|.+.|.+    .+.+.|+++
T Consensus       202 a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~  281 (444)
T 1igt_B          202 VAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVN  281 (444)
T ss_dssp             EEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEET
T ss_pred             EEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEEC
Confidence            43321    1  111                  1113433222232222 46899999999998873    358999999


Q ss_pred             CeeeCCCCc---EE------eeCCeEEECCCCCCCCeEEEEEeEeCCCCce-eeEEEE--EEEeccEEEeccceeeeecc
Q psy15206        112 NNAILPNGQ---TI------FTGSTLQIPRITKEDRGAYYCVAQNGIGRGA-RRKIEV--KVEFAPIVTVQSTRIGQALH  179 (232)
Q Consensus       112 ~~~~~~~~~---~~------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~-~~~~~l--~v~~~p~~~~~~~~~~~~~g  179 (232)
                      +..+.....   ..      ...+.|.|.++..+|.|.|+|.+.|..+... ...+.+  .+..+|.+...+.......+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~  361 (444)
T 1igt_B          282 NVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTK  361 (444)
T ss_dssp             TEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTS
T ss_pred             CccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccC
Confidence            987643211   11      1234799999999999999999999876532 233322  34567877655443222345


Q ss_pred             CeEEEEEEeec-CCCC-eEEEeeCCEEecC----------CCeEEE----EEeccccCCceEEEEecC
Q psy15206        180 HDMDLDCHIEA-YPHP-ILYWAKDGEIVVN----------DEYHSI----SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       180 ~~~~l~C~~~~-~p~~-~~~W~~~g~~~~~----------~~~~~~----~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+.|.|.+.| .|.+ .|.|+|+|..+..          ++.+.+    .+......|.|.|+|.|.
T Consensus       362 ~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~  429 (444)
T 1igt_B          362 KQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVV  429 (444)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEE
T ss_pred             CeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEE
Confidence            56999999998 4555 8999999987632          222322    233334467999999984

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.91  E-value=9.8e-23  Score=142.65  Aligned_cols=145  Identities=15%  Similarity=0.182  Sum_probs=111.1

Q ss_pred             ceEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCcEEee-C---C--eEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206         83 LSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFT-G---S--TLQIPRITKEDRGAYYCVAQNGIGRGARR  155 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~-~---~--~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  155 (232)
                      ...+.+|..+.|.|.+.+ .|.+.+.|+++|..+....+.... +   +  +|.|.++..+|.|.|+|.+.|.  . ...
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng--~-a~~   87 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG--K-ATN   87 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEET--T-EEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECC--C-eEE
Confidence            456778999999999865 688999999999998655443321 1   2  6999999999999999999993  3 222


Q ss_pred             EEEEEEE---------------------eccEEEeccceeeeeccCeEEEEEEeecC-CCCeEEEeeCCEEecCC-----
Q psy15206        156 KIEVKVE---------------------FAPIVTVQSTRIGQALHHDMDLDCHIEAY-PHPILYWAKDGEIVVND-----  208 (232)
Q Consensus       156 ~~~l~v~---------------------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~g~~~~~~-----  208 (232)
                      ...+.+.                     .+|.+.... ...+..|+++.|.|.+.|. |.|.+.|+|||..+..+     
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~  166 (207)
T 3rbs_A           88 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF  166 (207)
T ss_dssp             EEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCC
T ss_pred             EEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEc
Confidence            2222210                     146655444 4678899999999999998 99999999999988532     


Q ss_pred             --CeEEEEEeccccCCceEEEEecC
Q psy15206        209 --EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 --~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                        +...|.+.++..+|+|.|+|.|.
T Consensus       167 ~~~~~~L~I~~v~~~D~G~Y~C~a~  191 (207)
T 3rbs_A          167 KDGICTLLITEFSKKDAGIYEVILK  191 (207)
T ss_dssp             SSEEEEEEETTCCGGGCEEEEEEEE
T ss_pred             CCCEEEEEECCCCcccCEEEEEEEE
Confidence              33468888999999999999974

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.91  E-value=1.8e-23  Score=147.52  Aligned_cols=159  Identities=25%  Similarity=0.485  Sum_probs=120.9

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC----CcEEeeCCeE----EECCCCCCCCeEEEE
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN----GQTIFTGSTL----QIPRITKEDRGAYYC  143 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~----~~~~~~~~~l----~i~~~~~~~~g~y~C  143 (232)
                      .+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...    .+....++.+    .|.++...|.|.|+|
T Consensus         8 ~~P~i~~-~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            8 QSPRIIE-HPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCEEEE-CCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             CCCEEec-CCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            3455544 566678889999999999998888899999999887543    1222333333    577889999999999


Q ss_pred             EeEeCCCCceeeEEEEEEEe-ccEEEeccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecC--------CCeE--
Q psy15206        144 VAQNGIGRGARRKIEVKVEF-APIVTVQSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVN--------DEYH--  211 (232)
Q Consensus       144 ~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~--------~~~~--  211 (232)
                      .+.+..+........+.|.. +|.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+..        ..++  
T Consensus        87 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~  166 (217)
T 2vr9_A           87 VAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI  166 (217)
T ss_dssp             EEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEE
T ss_pred             EEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEe
Confidence            99997765434455666654 4555555666778899999999998 8999999999999988762        2222  


Q ss_pred             ----EEEEeccccCCceEEEEecC
Q psy15206        212 ----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       212 ----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                          .|.+.+++..|+|.|+|.|.
T Consensus       167 ~~~~~L~i~~~~~~d~G~Y~C~a~  190 (217)
T 2vr9_A          167 VDGGNLLISNVEPIDEGNYKCIAQ  190 (217)
T ss_dssp             ETTTEEEESSCCSTTCEEEEEEEE
T ss_pred             cCCCcEEEeeCCHHHCeEEEEEEE
Confidence                57777888899999999974

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.91  E-value=1.4e-23  Score=173.52  Aligned_cols=210  Identities=20%  Similarity=0.248  Sum_probs=96.9

Q ss_pred             CcceEeecC--CeEEEEEEecCCCCCeEEEEeC--cEee-------------------------eeEEEEeeee-----c
Q psy15206         20 TQLSVAKEG--QSVQLECHAEGHPIPTISWRRN--FKRL-------------------------GRLHLAIPYT-----S   65 (232)
Q Consensus        20 ~~~~~~~~G--~~v~l~C~~~~~p~~~~~W~~~--~~~~-------------------------~~~~~~~~~~-----~   65 (232)
                      +..+.+.+|  ++++|.|.+.+ |.+.+.|+++  +...                         |.|+|.....     .
T Consensus       133 ~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s  211 (772)
T 3v2a_R          133 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS  211 (772)
T ss_dssp             EEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEEC
T ss_pred             ceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEE
Confidence            456778899  99999999987 7789999995  2211                         3677766332     1


Q ss_pred             --CceeecCC--cEEecCCCCceEeecCCcEEEEeeecc--CCCCeEEEEeCCeeeCCCCc------------EEeeCCe
Q psy15206         66 --PEAQVDTP--PVILNNSPQLSVAKEGQSVQLECHAEG--HPIPTISWRRENNAILPNGQ------------TIFTGST  127 (232)
Q Consensus        66 --~~l~v~~~--p~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~~~~~~------------~~~~~~~  127 (232)
                        ..+.+...  +......+....+.+|+.+.|.|.+.+  .+.+.+.|++++..+.....            .....+.
T Consensus       212 ~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (772)
T 3v2a_R          212 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST  291 (772)
T ss_dssp             CEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEE
T ss_pred             EEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEE
Confidence              22222222  122222333457889999999999987  34567999998876433211            1223457


Q ss_pred             EEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEecc---ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEE
Q psy15206        128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS---TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI  204 (232)
Q Consensus       128 l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~---~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~  204 (232)
                      |.|.++..+|.|.|+|.+.+..+. ....+.+.|..+|.+...+   ....+..|+.+.|.|.+.+.|.+.+.|+++|..
T Consensus       292 L~i~~v~~~d~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~  370 (772)
T 3v2a_R          292 LTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIP  370 (772)
T ss_dssp             EEESSCCSTTCSEEEEEEECSSCE-EEEEEEEEEECCCC-----------------------------------------
T ss_pred             EEECcCCcCCCeEEEEEEEcCCcc-eeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEe
Confidence            999999999999999999987765 5677788888888665433   345678899999999999999999999999987


Q ss_pred             ecCC----CeEEEEEeccccCCceEEEEecC
Q psy15206        205 VVND----EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       205 ~~~~----~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +...    ....+.+.++...|+|.|+|.|.
T Consensus       371 l~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  401 (772)
T 3v2a_R          371 LESNHTIKAGHVLTIMEVSERDTGNYTVILT  401 (772)
T ss_dssp             -------------------------------
T ss_pred             CCCCceEccceeEEEecCChhcCceEEEEEE
Confidence            7643    23567777888899999999874

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.91  E-value=2.2e-22  Score=153.93  Aligned_cols=150  Identities=24%  Similarity=0.465  Sum_probs=123.5

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeCC-----CCcEEee----CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAILP-----NGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~~-----~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +....+.+|+.+.|.|.+.|.|.+.+.|+++  +..+..     ..+....    .+.|.|.++..+|.|.|.|.+.|..
T Consensus         7 ~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   86 (389)
T 2jll_A            7 LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI   86 (389)
T ss_dssp             CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSS
T ss_pred             cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCC
Confidence            4456777899999999999999999999999  776643     2333322    3589999999999999999999988


Q ss_pred             CCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC-----------eEEEEEecc
Q psy15206        150 GRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE-----------YHSISNFGT  218 (232)
Q Consensus       150 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~-----------~~~~~~~~~  218 (232)
                      |. ....+.|.|..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....           ...|.+.++
T Consensus        87 g~-~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~  165 (389)
T 2jll_A           87 GG-HQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPT  165 (389)
T ss_dssp             CE-EEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCC
T ss_pred             CC-cceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCC
Confidence            87 567888999999988766665567889999999999999999999999998876432           345777788


Q ss_pred             ccCCceEEEEecC
Q psy15206        219 SEGTTGSLQCKVP  231 (232)
Q Consensus       219 ~~~d~g~Y~C~~~  231 (232)
                      ...|+|.|+|.|.
T Consensus       166 ~~~d~G~Y~C~a~  178 (389)
T 2jll_A          166 SDNDFGRYNCTAT  178 (389)
T ss_dssp             STTSSEEEEEEEE
T ss_pred             ChhhCEEEEEEEE
Confidence            8899999999873

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.90  E-value=7.9e-23  Score=142.92  Aligned_cols=142  Identities=18%  Similarity=0.232  Sum_probs=113.4

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCe-EEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      .+....+.+|+.+.|.|.+.+.+.+. +.|++++..+....      +.|.|.++..+|+|.|+|.+.+..   .+..+.
T Consensus        13 ~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~------~~L~i~~v~~~D~G~Y~C~a~n~~---~s~~~~   83 (204)
T 3sgj_C           13 EPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA------SSYFIDAATVDDSGEYRCQTQLST---LSDPVQ   83 (204)
T ss_dssp             ESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS------SEEEESSCCGGGCEEEEEEETTSB---CCCCEE
T ss_pred             cCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc------cEEEEecccccCCEEEEEEeCCCc---ccccEE
Confidence            34446788999999999999887765 99999998775432      689999999999999999998743   345677


Q ss_pred             EEEEeccEEEeccceeeeeccCeEEEEEEeecC-CCCeEEEeeCCEEec-CCCeEEEEEeccccCCceEEEEecC
Q psy15206        159 VKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY-PHPILYWAKDGEIVV-NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       159 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~g~~~~-~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|..+|.+...+. ..+..|+.+.|.|.+.+. |.+.+.|+|+|..+. ......|.+.++..+|+|.|+|.|.
T Consensus        84 l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~  157 (204)
T 3sgj_C           84 LEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGL  157 (204)
T ss_dssp             EEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCcccCEEEEEEEE
Confidence            88888777665554 567789999999999665 557899999998764 2234467777888999999999974

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.90  E-value=7.3e-23  Score=143.80  Aligned_cols=158  Identities=23%  Similarity=0.481  Sum_probs=118.4

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC------cEEeeCCe-----EEECCCCCCCCeEE
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG------QTIFTGST-----LQIPRITKEDRGAY  141 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~------~~~~~~~~-----l~i~~~~~~~~g~y  141 (232)
                      +|.+. ..+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....      .....++.     +.|.++...|.|.|
T Consensus         9 pp~i~-~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y   87 (212)
T 2v9r_A            9 PPRIV-EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY   87 (212)
T ss_dssp             EEEEE-ECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred             Cccee-cCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence            34444 35677788899999999999888888999999998764322      12222333     34456689999999


Q ss_pred             EEEeEeCCCCceeeEEEEEEEe-ccEEEeccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCCCe------EEE
Q psy15206        142 YCVAQNGIGRGARRKIEVKVEF-APIVTVQSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVNDEY------HSI  213 (232)
Q Consensus       142 ~C~~~~~~~~~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~~~------~~~  213 (232)
                      +|.+.+..+......+.+.|.. ++.+...+....+..|+.+.|.|.+ .+.|.+.+.|+++|..+.....      ..+
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L  167 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKL  167 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEE
T ss_pred             EEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeE
Confidence            9999997765334456666655 3444455666778899999999998 8999999999999998874321      256


Q ss_pred             EEeccccCCceEEEEecC
Q psy15206        214 SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       214 ~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.++...|+|.|+|.|.
T Consensus       168 ~i~~~~~~d~G~Y~C~a~  185 (212)
T 2v9r_A          168 MITYTRKSDAGKYVCVGT  185 (212)
T ss_dssp             EESSCCGGGCEEEEEEEE
T ss_pred             EEeeCCHhhCeeEEEEEe
Confidence            777788899999999874

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.90  E-value=2.5e-22  Score=148.79  Aligned_cols=159  Identities=20%  Similarity=0.398  Sum_probs=121.4

Q ss_pred             cCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eC---CeEEECCCCC-CCCeEEEEE
Q psy15206         71 DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TG---STLQIPRITK-EDRGAYYCV  144 (232)
Q Consensus        71 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~---~~l~i~~~~~-~~~g~y~C~  144 (232)
                      ..+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+........  ..   ..|.|.++.. .|.|.|+|.
T Consensus         4 ~~~P~~~~-~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   82 (304)
T 2yd9_A            4 EEPPRFIK-EPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECV   82 (304)
T ss_dssp             CCCCEEEE-CCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEE
T ss_pred             ccCCeeee-cCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEE
Confidence            34566654 56677888999999999999999999999999987644322221  11   4699999998 999999999


Q ss_pred             eEeCCCCceeeEEEEEEEec-------cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC---------
Q psy15206        145 AQNGIGRGARRKIEVKVEFA-------PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND---------  208 (232)
Q Consensus       145 ~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~---------  208 (232)
                      +.+..+. ....+.+.|..+       |.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+...         
T Consensus        83 a~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~  161 (304)
T 2yd9_A           83 AQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL  161 (304)
T ss_dssp             EECSSCE-ECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEEC
T ss_pred             EECCCCe-EEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeC
Confidence            9998776 556778888764       67777777778889999999999999999999999999876532         


Q ss_pred             CeEEEEEeccccCCceEEEEecC
Q psy15206        209 EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ....|.+.++...|+|.|+|.|.
T Consensus       162 ~~~~L~i~~~~~~d~G~Y~C~a~  184 (304)
T 2yd9_A          162 RSGALQIESSEETDQGKYECVAT  184 (304)
T ss_dssp             TTSCEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEEEEccCCcccCEEEEEEEE
Confidence            11257777888899999999874

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.90  E-value=1.6e-23  Score=146.82  Aligned_cols=154  Identities=19%  Similarity=0.352  Sum_probs=121.7

Q ss_pred             cCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeee------------CCCCcEEeeCCeEEECCCCCCCCeEEEEEe
Q psy15206         78 NNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI------------LPNGQTIFTGSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        78 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~------------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      ...+....+.+|+.+.|.|.+.+.+.+.+.|++++..+            ....+.......|.|.++...|.|.|+|.+
T Consensus         8 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~   87 (209)
T 1nbq_A            8 HSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMV   87 (209)
T ss_dssp             ECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEE
T ss_pred             EcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEE
Confidence            34566677889999999999998888899999987552            112334445588999999999999999999


Q ss_pred             EeCCCC-ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCC---------------
Q psy15206        146 QNGIGR-GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVND---------------  208 (232)
Q Consensus       146 ~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~---------------  208 (232)
                      .+..+. .....+.+.|..+|.+........+..|+.+.|.|.+ .+.|.+.+.|+++|..+...               
T Consensus        88 ~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~  167 (209)
T 1nbq_A           88 SEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN  167 (209)
T ss_dssp             EETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCC
T ss_pred             ecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEc
Confidence            987542 2445677788888876655555668899999999996 89999999999999876542               


Q ss_pred             -CeEEEEEeccccCCceEEEEecC
Q psy15206        209 -EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 -~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                       ....|.+.++...|+|.|+|.|.
T Consensus       168 ~~~~~L~i~~~~~~d~G~Y~C~a~  191 (209)
T 1nbq_A          168 PTTGELVFDPLSASDTGEYSCEAR  191 (209)
T ss_dssp             TTTCCEEESSCCGGGCCCEEEEEE
T ss_pred             CCcceEEEEeccccCCeEEEEEEe
Confidence             23467788888999999999874

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.90  E-value=5.1e-23  Score=143.05  Aligned_cols=144  Identities=15%  Similarity=0.181  Sum_probs=99.7

Q ss_pred             EeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc---EEeeCCeEEECCCCCCCCeEEEEEeEeCCCC-ceeeEEEEE
Q psy15206         85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---TIFTGSTLQIPRITKEDRGAYYCVAQNGIGR-GARRKIEVK  160 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~  160 (232)
                      .+.+|+++.|.|.+.+.+. .+.|++++..+.....   .......|.|.++..+|+|.|+|.+.+..+. ..+..+.+.
T Consensus        15 ~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~   93 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELV   93 (196)
T ss_dssp             EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEE
T ss_pred             cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEE
Confidence            6779999999999987655 8999999876532111   1112357999999999999999999886543 224556777


Q ss_pred             EEe---ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC-----------CCeEEEEEeccccCCceEE
Q psy15206        161 VEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN-----------DEYHSISNFGTSEGTTGSL  226 (232)
Q Consensus       161 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-----------~~~~~~~~~~~~~~d~g~Y  226 (232)
                      |..   +|.+...+. ..+..|+.++|.|.+.+.| +.+.|+|+|..+..           .....|.+.+++.+|+|.|
T Consensus        94 V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y  171 (196)
T 2d3v_A           94 VTGFYNKPTLSALPS-PVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWML  171 (196)
T ss_dssp             EECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEE
T ss_pred             ecCCCCCCeEEccCC-ccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeE
Confidence            765   466654443 4677899999999999998 89999999976531           1236788889999999999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      +|.|.
T Consensus       172 ~C~a~  176 (196)
T 2d3v_A          172 RCYGS  176 (196)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99974

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.90  E-value=3.9e-23  Score=155.74  Aligned_cols=210  Identities=19%  Similarity=0.289  Sum_probs=129.1

Q ss_pred             CcceEeecCCeEEEEEEecCC--CCCeEEEEeCc--Ee--------------------ee--------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGH--PIPTISWRRNF--KR--------------------LG--------------------   55 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~--p~~~~~W~~~~--~~--------------------~~--------------------   55 (232)
                      +.++.+.+|++++|.|.+.+.  +.+.+.|+|+.  ..                    .+                    
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL   86 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence            567889999999999999875  36789999851  10                    11                    


Q ss_pred             ------eEEEEeee------ecCceeec----CCcEEecCCCCceEeecCCcEEEEeeeccC-CC-CeEEEEeCCeeeCC
Q psy15206         56 ------RLHLAIPY------TSPEAQVD----TPPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-PTISWRRENNAILP  117 (232)
Q Consensus        56 ------~~~~~~~~------~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~  117 (232)
                            .|.|....      ....|.|.    .+|.+....+ ...+..|+.+.|.|.+.|. |. +.+.|++++..+..
T Consensus        87 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~  165 (344)
T 1za6_B           87 RSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV  165 (344)
T ss_dssp             CGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECC-SCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTE
T ss_pred             CcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccc-cccccCCCcEEEEEEEeeEECCCeEEEEecCCccCce
Confidence                  23333211      03345554    2333332111 2234579999999999886 54 68999998865310


Q ss_pred             --------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCce-eeEEEE----------------------EEEeccE
Q psy15206        118 --------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA-RRKIEV----------------------KVEFAPI  166 (232)
Q Consensus       118 --------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~-~~~~~l----------------------~v~~~p~  166 (232)
                              ........+.|.|.++..+| |.|+|.+.|..+... ...+.+                      .+..+|.
T Consensus       166 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~  244 (344)
T 1za6_B          166 HTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQ  244 (344)
T ss_dssp             EECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------CCBCCE
T ss_pred             eECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCCE
Confidence                    11111122368888888878 999999999765421 121111                      1234666


Q ss_pred             EEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeCCEEecC----------CCeEEE----EEeccccCCceEEEEec
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDGEIVVN----------DEYHSI----SNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g~~~~~----------~~~~~~----~~~~~~~~d~g~Y~C~~  230 (232)
                      +...+.......|..+.|.|.+.|+++  +.+.|+|||..+..          ++.+.+    .+......|.|.|+|.|
T Consensus       245 v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a  324 (344)
T 1za6_B          245 VYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSV  324 (344)
T ss_dssp             EEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEE
T ss_pred             EEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEE
Confidence            655443322335677999999999633  57999999876531          222322    22333336799999997


Q ss_pred             C
Q psy15206        231 P  231 (232)
Q Consensus       231 ~  231 (232)
                      .
T Consensus       325 ~  325 (344)
T 1za6_B          325 M  325 (344)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.90  E-value=2.7e-22  Score=136.88  Aligned_cols=142  Identities=18%  Similarity=0.226  Sum_probs=111.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCe-EEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      .+....+.+|+.+.|.|.+.+.+.+. +.|++++..+..      ..+.|.|.++..+|.|.|.|.+.+..+   ...+.
T Consensus        13 ~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~~---s~~~~   83 (175)
T 1fnl_A           13 EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQ   83 (175)
T ss_dssp             ESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCC---CCCEE
T ss_pred             cCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC------CceEEEEeCCCcccCEEEEEEeeCCcc---cccEE
Confidence            44555788999999999998887766 889999877643      356899999999999999999987544   34566


Q ss_pred             EEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecCC-CeEEEEEeccccCCceEEEEecC
Q psy15206        159 VKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVND-EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       159 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~~-~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|..++.+... ....+..|+.+.|.|.+.+.+++ .+.|+|+|..+... ....|.+.++..+|+|.|+|.|.
T Consensus        84 l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  157 (175)
T 1fnl_A           84 LEVHIGWLLLQA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGL  157 (175)
T ss_dssp             EEEECSSEEEEC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEeCCCceeeC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEEEEE
Confidence            777765554443 34567789999999999887665 89999999877522 34567777888899999999874

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.90  E-value=1.1e-21  Score=137.77  Aligned_cols=145  Identities=17%  Similarity=0.238  Sum_probs=111.7

Q ss_pred             eecCCcEEEEeeeccC-CCCeEEEEeCCeeeCCCCcEEee--C--CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         86 AKEGQSVQLECHAEGH-PIPTISWRRENNAILPNGQTIFT--G--STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      ...++.+.|.|.+.+. |.+.+.|++++..+....+....  +  ..|.|.++..+|.|.|+|.+.+..+. ....+.+.
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~   92 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTG-HQKTVDLS   92 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEEEC
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcc-eEEEEEEE
Confidence            3467888999998885 47789999999988765554332  2  35999999999999999999997665 33444554


Q ss_pred             EEe--------------------ccEE-EeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------
Q psy15206        161 VEF--------------------APIV-TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------  210 (232)
Q Consensus       161 v~~--------------------~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------  210 (232)
                      +..                    .|.+ ...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....+         
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~  172 (212)
T 2r15_A           93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGR  172 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTT
T ss_pred             EeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCC
Confidence            331                    3333 3345667788999999999999999999999999988875443         


Q ss_pred             -EEEEEeccccCCceEEEEecC
Q psy15206        211 -HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       211 -~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                       ..|.+.++...|+|.|+|.|.
T Consensus       173 ~~~L~i~~~~~~d~G~Y~C~a~  194 (212)
T 2r15_A          173 TAYFTINGVSTADSGKYGLVVK  194 (212)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEEcCcchHHCeEEEEEEE
Confidence             466777788899999999874

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.89  E-value=1.7e-22  Score=142.65  Aligned_cols=156  Identities=17%  Similarity=0.220  Sum_probs=113.8

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE---EeeCC--eEEECCCCCCCCeEEEEEeE
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT---IFTGS--TLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~--~l~i~~~~~~~~g~y~C~~~  146 (232)
                      .+|.+.. .+. ..+.+|+++.|.|.+.+ +.+.+.|+++|..+......   .....  .|.|.++..+|+|.|+|.+.
T Consensus         8 ~~P~i~~-~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   84 (218)
T 1uct_A            8 PMPFISA-KSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYR   84 (218)
T ss_dssp             CCCCEEE-SSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEe-cCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEE
Confidence            3444443 333 46789999999999976 56789999988654321111   11234  89999999999999999999


Q ss_pred             eCCCC-ceeeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec-----CCCeEEEEEec
Q psy15206        147 NGIGR-GARRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV-----NDEYHSISNFG  217 (232)
Q Consensus       147 ~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~-----~~~~~~~~~~~  217 (232)
                      +..+. ..+..+.+.|..   +|.+...+ ...+..|++++|.|.+.+.|.+.+.|+|+|..+.     ......|.+.+
T Consensus        85 n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~  163 (218)
T 1uct_A           85 IGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGP  163 (218)
T ss_dssp             ETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCS
T ss_pred             cCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEcc
Confidence            86542 233456777764   56666555 4567899999999976677788999999987654     23456788889


Q ss_pred             cccCCceEEEEecC
Q psy15206        218 TSEGTTGSLQCKVP  231 (232)
Q Consensus       218 ~~~~d~g~Y~C~~~  231 (232)
                      ++.+|+|.|+|.|.
T Consensus       164 v~~~D~G~Y~C~a~  177 (218)
T 1uct_A          164 VDLNVSGIYRCYGW  177 (218)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCcccCEEEEEEEE
Confidence            99999999999974

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.89  E-value=1.7e-22  Score=157.32  Aligned_cols=209  Identities=17%  Similarity=0.222  Sum_probs=136.2

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCc--Ee--------------------e---------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNF--KR--------------------L---------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~--~~--------------------~---------------------   54 (232)
                      +.++.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..                    .                     
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (444)
T 1igt_B            7 SGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL   86 (444)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC
Confidence            5678899999999999998754  6789999831  10                    0                     


Q ss_pred             -----eeEEEEeeee---------cCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEEEEeCCee
Q psy15206         55 -----GRLHLAIPYT---------SPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWRRENNA  114 (232)
Q Consensus        55 -----~~~~~~~~~~---------~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~  114 (232)
                           |.|.|.....         ...|.|..    +|.+....+. ..+.+|+.+.|.|.+.|. |.+ .+.|++++..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  165 (444)
T 1igt_B           87 KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  165 (444)
T ss_dssp             CGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCC-SSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEeccc-ccCCCCCcEEEEEEEcceeCCCcEEEEecCCCC
Confidence                 2334433211         23455542    2333321222 223679999999999884 666 8999998865


Q ss_pred             eCC--CC-----cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE------------------EeccEEEe
Q psy15206        115 ILP--NG-----QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV------------------EFAPIVTV  169 (232)
Q Consensus       115 ~~~--~~-----~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v------------------~~~p~~~~  169 (232)
                      +..  ..     ......+.|.|.++..+| |.|+|.+.|..+.. .....+.+                  ..+|.+..
T Consensus       166 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~  243 (444)
T 1igt_B          166 SGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFI  243 (444)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEE
T ss_pred             CCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCCCcccCCccccCCcccCCCceEEe
Confidence            210  00     111123568899999889 99999999987652 22222211                  12566534


Q ss_pred             ccceee--eeccCeEEEEEEeecCC----CCeEEEeeCCEEecCCC--------------eEEEEEeccccCCceEEEEe
Q psy15206        170 QSTRIG--QALHHDMDLDCHIEAYP----HPILYWAKDGEIVVNDE--------------YHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       170 ~~~~~~--~~~g~~~~l~C~~~~~p----~~~~~W~~~g~~~~~~~--------------~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      .+....  +..|+.+.|.|.+.|.+    .+.+.|+|+|..+....              ...|.+.++...|+|.|+|.
T Consensus       244 ~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~  323 (444)
T 1igt_B          244 FPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCK  323 (444)
T ss_dssp             ECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEE
T ss_pred             cCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEE
Confidence            333322  47899999999999984    35899999998764321              12567777788999999999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus       324 a~  325 (444)
T 1igt_B          324 VN  325 (444)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.89  E-value=8.9e-21  Score=145.01  Aligned_cols=214  Identities=20%  Similarity=0.314  Sum_probs=148.1

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeC--cEee--------------------------------eeE
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN--FKRL--------------------------------GRL   57 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~--~~~~--------------------------------~~~   57 (232)
                      +|.|+.  +.+..+.+|++++|.|.+.+.|.+.+.|+|+  +..+                                |.|
T Consensus         1 ~P~i~~--~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   78 (389)
T 2jll_A            1 QPHIIQ--LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY   78 (389)
T ss_dssp             CCEEEE--CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEE
T ss_pred             CCeEEe--cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEE
Confidence            578775  4567888999999999999999999999997  4321                                244


Q ss_pred             EEEeee------ecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEee----C
Q psy15206         58 HLAIPY------TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFT----G  125 (232)
Q Consensus        58 ~~~~~~------~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~----~  125 (232)
                      .|....      ..+.|.|..+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....  +....    .
T Consensus        79 ~C~a~n~~g~~~~~~~l~V~~~P~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~  157 (389)
T 2jll_A           79 DCEAASRIGGHQKSMYLDIEYAPKFIS-NQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRK  157 (389)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEEECC-SCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSC
T ss_pred             EEEEEeCCCCcceEEEEEEEeCCEEec-CcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCE
Confidence            444421      166777777776654 3444467789999999999999999999999998875433  22221    2


Q ss_pred             CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEee----cCCCC--eEEEe
Q psy15206        126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIE----AYPHP--ILYWA  199 (232)
Q Consensus       126 ~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~--~~~W~  199 (232)
                      ..|.|.++...|.|.|.|.+.|..|. ....+.+.+...|...... ......+..+.|.|...    +.|..  .+.|.
T Consensus       158 ~~L~i~~~~~~d~G~Y~C~a~N~~G~-~~~~~~l~v~~~P~~P~~~-~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~  235 (389)
T 2jll_A          158 MILEIAPTSDNDFGRYNCTATNHIGT-RFQEYILALADVPSSPYGV-KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVK  235 (389)
T ss_dssp             EEEEECCCSTTSSEEEEEEEEETTEE-EEEEEEEEECCCCCCCEEE-EEEEECSSCEEEEEECCSCCTTSCEEEEEEEEE
T ss_pred             EEEEECCCChhhCEEEEEEEEcCCCc-EEEEEEEEecCCCCCCcce-EEeeccCCEEEEEEeCCCCCCCcceEEEEEEEE
Confidence            46999999999999999999998877 4445566655444211100 11223457788998742    22322  47888


Q ss_pred             eCCEE----ec-CCCeEEEEEeccccCCceEEEEec
Q psy15206        200 KDGEI----VV-NDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       200 ~~g~~----~~-~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      +++..    +. ......+.+.+....+.+.|.|.|
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A  271 (389)
T 2jll_A          236 EVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAA  271 (389)
T ss_dssp             ETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEE
T ss_pred             ECCCcccEEeeccCCcceEEECCccCCCEEEEEEEE
Confidence            87641    22 223456667778889999999986

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.89  E-value=2.3e-22  Score=147.93  Aligned_cols=152  Identities=21%  Similarity=0.334  Sum_probs=122.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCC-CCeEEEEe-CCeeeCCC-CcEEe-----eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP-IPTISWRR-ENNAILPN-GQTIF-----TGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~-~~~~~~~~-~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .+....+.+|+.+.|.|.+.+.+ .+.+.|++ +|..+... .+...     ....|.|.++..+|.|.|+|.+.+..+.
T Consensus         8 ~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~   87 (291)
T 1qz1_A            8 VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGT   87 (291)
T ss_dssp             ESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSC
T ss_pred             cCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCC
Confidence            45667788999999999999876 57899999 66665432 22221     2358999999999999999999998766


Q ss_pred             ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC--------CeEEEEEeccccCCc
Q psy15206        152 GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND--------EYHSISNFGTSEGTT  223 (232)
Q Consensus       152 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--------~~~~~~~~~~~~~d~  223 (232)
                      .....+.+.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+++|..+...        ....|.+.++...|+
T Consensus        88 ~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~  167 (291)
T 1qz1_A           88 QSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE  167 (291)
T ss_dssp             EEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGC
T ss_pred             eeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccC
Confidence            566778888888898888888888899999999999999999999999998765421        122567778888999


Q ss_pred             eEEEEecC
Q psy15206        224 GSLQCKVP  231 (232)
Q Consensus       224 g~Y~C~~~  231 (232)
                      |.|+|.+.
T Consensus       168 G~Y~C~a~  175 (291)
T 1qz1_A          168 GTYRCEGR  175 (291)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            99999874

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.89  E-value=5.5e-22  Score=146.94  Aligned_cols=157  Identities=18%  Similarity=0.335  Sum_probs=123.5

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC-cEEe---eCC--eEEECCCCCCCCeEEEEEeE
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIF---TGS--TLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~---~~~--~l~i~~~~~~~~g~y~C~~~  146 (232)
                      +|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... +...   .++  .|.|.++..+|.|.|+|.+.
T Consensus         4 ~P~~~~-~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            4 APHFKE-ELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCEEEE-CCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCeeee-cccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            455554 5667888899999999999999999999999998876432 2222   122  79999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEeccEEEec-----cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EE
Q psy15206        147 NGIGRGARRKIEVKVEFAPIVTVQ-----STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HS  212 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p~~~~~-----~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~  212 (232)
                      +..+. ....+.|.|..+|.+...     +....+..|+.+.|.|.+.|.|.+.+.|+++|..+....+         ..
T Consensus        83 n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~  161 (305)
T 2nzi_A           83 NQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS  161 (305)
T ss_dssp             ETTEE-EEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEE
T ss_pred             cCCCC-ccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceE
Confidence            98776 567778888777765432     2445677899999999999999999999999877664433         45


Q ss_pred             EEEec-cccCCceEEEEecC
Q psy15206        213 ISNFG-TSEGTTGSLQCKVP  231 (232)
Q Consensus       213 ~~~~~-~~~~d~g~Y~C~~~  231 (232)
                      +.+.+ +...|+|.|+|.|.
T Consensus       162 l~i~~~~~~~d~G~Y~C~a~  181 (305)
T 2nzi_A          162 LVFPNGVERKDAGFYVVCAK  181 (305)
T ss_dssp             EEETTCCCSTTCEEEEEEEE
T ss_pred             EEEecCCccCccEEEEEEEE
Confidence            56666 88899999999873

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.89  E-value=2.6e-22  Score=139.70  Aligned_cols=154  Identities=21%  Similarity=0.243  Sum_probs=110.9

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC---CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN---GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +|.+.. .+. ..+.+|+.+.|.|.+.+.+. .+.|++++..+...   .........|.|.++..+|.|.|+|.+.+..
T Consensus         5 ~P~i~~-~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (198)
T 1ugn_A            5 KPTLWA-EPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT   81 (198)
T ss_dssp             CCEEEE-ESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCeEec-cCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence            344433 333 37789999999999988665 69999998765211   1112235689999999999999999999875


Q ss_pred             -C-CceeeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----------CeEEE
Q psy15206        150 -G-RGARRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----------EYHSI  213 (232)
Q Consensus       150 -~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----------~~~~~  213 (232)
                       + ...+..+.+.|..   +|.+...+ ...+..|++++|.|.+.+. .+.+.|+|+|..+...           ....|
T Consensus        82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L  159 (198)
T 1ugn_A           82 AGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIF  159 (198)
T ss_dssp             TEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEE
T ss_pred             CCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEE
Confidence             3 1234566777776   45555444 3567899999999999888 7799999999765311           24678


Q ss_pred             EEeccccCCceEEEEecC
Q psy15206        214 SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       214 ~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.++..+|+|.|+|.|.
T Consensus       160 ~i~~v~~~D~G~Y~C~a~  177 (198)
T 1ugn_A          160 SVGPVSPSRRWWYRCYAY  177 (198)
T ss_dssp             EECCCCTTSCEEEEEEEE
T ss_pred             EecccCcccCeEEEEEEE
Confidence            888999999999999974

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.89  E-value=3.3e-22  Score=137.61  Aligned_cols=150  Identities=17%  Similarity=0.211  Sum_probs=111.5

Q ss_pred             cCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         71 DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        71 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      ..+|.+.. .+.. .+.+|+++.|.|.+.+ +.+.+.|++++..      .......|.|.++..+|.|.|+|.+.+..+
T Consensus         6 ~~~P~i~~-~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   76 (184)
T 2gi7_A            6 LPKPSLQA-LPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSL   76 (184)
T ss_dssp             BCCCEEEE-ESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC------CEESSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCCeEEe-CCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc------ccCcccEEEECcCChhhCceEEEEEEcCCC
Confidence            33454443 3333 6789999999999987 6778999998865      233467899999999999999999998654


Q ss_pred             C-ceeeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----CeEEEEEeccccC
Q psy15206        151 R-GARRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----EYHSISNFGTSEG  221 (232)
Q Consensus       151 ~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----~~~~~~~~~~~~~  221 (232)
                      . ..+..+.+.|..   +|.+...+ ...+..|+.+.|.|.+.+.+ +.+.|+|+|..+...     ....|.+.+++.+
T Consensus        77 ~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~  154 (184)
T 2gi7_A           77 WSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPERWYRASFPIITVTAA  154 (184)
T ss_dssp             EBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCEEEEESSSEEEETTC
T ss_pred             ccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCCCceEEEEEccCCcc
Confidence            2 234456666643   56666655 45677899999999987654 699999999876532     2334556678889


Q ss_pred             CceEEEEecC
Q psy15206        222 TTGSLQCKVP  231 (232)
Q Consensus       222 d~g~Y~C~~~  231 (232)
                      |+|.|+|.|.
T Consensus       155 D~G~Y~C~a~  164 (184)
T 2gi7_A          155 HSGTYRCYSF  164 (184)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCeEEEEEEE
Confidence            9999999974

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.89  E-value=3.3e-22  Score=136.59  Aligned_cols=142  Identities=21%  Similarity=0.246  Sum_probs=109.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      .+....+.+|+++.|.|.+.+.+.+ .+.|++++..+..      ..+.|.|.+++.+|.|.|+|.+.+..+.   ..+.
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~~s---~~~~   80 (176)
T 1f2q_A           10 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVNAKFEDSGEYKCQHQQVNES---EPVY   80 (176)
T ss_dssp             ESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------CSSEEEECSCCGGGCEEEEEECTTSSCC---CCEE
T ss_pred             CCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC------CceEEEEeccceecCEEEEEEcCCcccc---ccEE
Confidence            3455678899999999999887775 6999999987653      2568999999999999999999875443   4456


Q ss_pred             EEEEeccEEEeccceeeeeccCeEEEEEEee-cCCCCeEEEeeCCEEecC-CCeEEEEEeccccCCceEEEEecC
Q psy15206        159 VKVEFAPIVTVQSTRIGQALHHDMDLDCHIE-AYPHPILYWAKDGEIVVN-DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       159 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~g~~~~~-~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|..++.+... ....+..|+.+.|.|.+. +.|.+.+.|+++|..+.. .....+.+.++..+|+|.|+|.|.
T Consensus        81 l~V~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  154 (176)
T 1f2q_A           81 LEVFSDWLLLQA-SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGK  154 (176)
T ss_dssp             EEEECSSEEEEE-SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEeCcceeecC-CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcccCEEEEEEEE
Confidence            666655544433 335677999999999994 666679999999998753 345677888889999999999874

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.89  E-value=1e-21  Score=140.69  Aligned_cols=150  Identities=24%  Similarity=0.462  Sum_probs=117.1

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC-----cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-----QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARR  155 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  155 (232)
                      +....+.+|+.+.|.|.+.+.|.+.+.|++++..+....     ........|.|.++...|.|.|+|.+.+..+. ...
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~-~~~  100 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQ  100 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCc-eEE
Confidence            345778899999999999998888999999998864322     22334568999999999999999999997665 445


Q ss_pred             EEEEEEEe----ccEEEe-ccceeeeeccCeEEEEEEeecCCCCeEEEee----CCEEecCC-----------------C
Q psy15206        156 KIEVKVEF----APIVTV-QSTRIGQALHHDMDLDCHIEAYPHPILYWAK----DGEIVVND-----------------E  209 (232)
Q Consensus       156 ~~~l~v~~----~p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~----~g~~~~~~-----------------~  209 (232)
                      .+.+.|..    +|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    +|..+..+                 .
T Consensus       101 ~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  180 (241)
T 3grw_A          101 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEA  180 (241)
T ss_dssp             EEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEE
T ss_pred             EEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCC
Confidence            56676654    233333 3556678889999999999999999999999    77665433                 2


Q ss_pred             eEEEEEeccccCCceEEEEecC
Q psy15206        210 YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 ~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...|.+.++...|+|.|+|.|.
T Consensus       181 ~~~L~i~~~~~~d~G~Y~C~a~  202 (241)
T 3grw_A          181 DVRLRLANVSERDGGEYLCRAT  202 (241)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceEEEECcCCcccCcEEEEEEe
Confidence            3457788888899999999974

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.89  E-value=1.8e-22  Score=140.23  Aligned_cols=147  Identities=15%  Similarity=0.185  Sum_probs=110.5

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEE---eeCCeEEECCCCCCCCeEEEEEeEeCCC-CceeeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI---FTGSTLQIPRITKEDRGAYYCVAQNGIG-RGARRK  156 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~g~y~C~~~~~~~-~~~~~~  156 (232)
                      +.. .+.+|+++.|.|.+.+ +.+.+.|++++..+.......   .....|.|.++..+|+|.|+|.+.|..+ ...+..
T Consensus        12 p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~   89 (196)
T 3p2t_A           12 PGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDP   89 (196)
T ss_dssp             SCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCC
T ss_pred             CCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCcc
Confidence            444 7788999999999987 667899999987654311111   1235799999999999999999999766 234556


Q ss_pred             EEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC----------CeEEEEEeccccCCc
Q psy15206        157 IEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND----------EYHSISNFGTSEGTT  223 (232)
Q Consensus       157 ~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~----------~~~~~~~~~~~~~d~  223 (232)
                      +.+.|..   +|.+...+.. .+..|+.++|.|.+.+. .+.+.|+|+|..+...          ....|.+.++..+|+
T Consensus        90 ~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~  167 (196)
T 3p2t_A           90 LELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHG  167 (196)
T ss_dssp             EEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGC
T ss_pred             EEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCC
Confidence            6777753   4566655543 57789999999999874 4689999998765322          234677788899999


Q ss_pred             eEEEEecC
Q psy15206        224 GSLQCKVP  231 (232)
Q Consensus       224 g~Y~C~~~  231 (232)
                      |.|+|.|.
T Consensus       168 G~Y~C~a~  175 (196)
T 3p2t_A          168 GTYRCFSS  175 (196)
T ss_dssp             EEEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999974

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.89  E-value=5.8e-22  Score=137.99  Aligned_cols=152  Identities=18%  Similarity=0.293  Sum_probs=115.8

Q ss_pred             CCCceEeecCCcEEEEee-eccCCC-CeEEEEeCCeeeCC--CCcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206         80 SPQLSVAKEGQSVQLECH-AEGHPI-PTISWRRENNAILP--NGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGA  153 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~-~~~~~~-~~~~W~~~~~~~~~--~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~  153 (232)
                      .+....+.+|+.+.|.|. +.+.|. +.+.|++++..+..  ......  .++.|.|.++..+|.|.|+|.+.+..+...
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~   93 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKS   93 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcc
Confidence            445678889999999999 888888 89999999877632  222222  356899999999999999999998654322


Q ss_pred             e--eEEEEEEE-------eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----CeEEEEEeccc
Q psy15206        154 R--RKIEVKVE-------FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----EYHSISNFGTS  219 (232)
Q Consensus       154 ~--~~~~l~v~-------~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----~~~~~~~~~~~  219 (232)
                      .  ..+.+.+.       .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|++++..+...     ....+.+.++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~  173 (201)
T 3s97_C           94 VFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQ  173 (201)
T ss_dssp             EECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCC
T ss_pred             hhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCC
Confidence            1  22333332       4566666666777889999999999999999999999999866532     23367778888


Q ss_pred             cCCceEEEEecC
Q psy15206        220 EGTTGSLQCKVP  231 (232)
Q Consensus       220 ~~d~g~Y~C~~~  231 (232)
                      ..|+|.|+|.|.
T Consensus       174 ~~d~G~Y~C~a~  185 (201)
T 3s97_C          174 LEDEGIYECEAE  185 (201)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             hhhCEEEEEEEE
Confidence            899999999873

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.89  E-value=1.8e-21  Score=152.73  Aligned_cols=215  Identities=14%  Similarity=0.229  Sum_probs=133.3

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCC-CC-C-eEEEEeCcEe--------------------------------eee
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGH-PI-P-TISWRRNFKR--------------------------------LGR   56 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~-p~-~-~~~W~~~~~~--------------------------------~~~   56 (232)
                      +|.+... +. ..+.+|+.++|.|.+.+. |. + .+.|++++..                                .|.
T Consensus       127 ~P~i~~~-~~-~~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~  204 (475)
T 1iga_A          127 SPKVFPL-SL-CSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKS  204 (475)
T ss_pred             CCeEEec-Cc-cccCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCce
Confidence            5666654 22 223799999999999985 55 4 9999996521                                123


Q ss_pred             EEEEeeeec-----Ccee--ec------------------CCcEEecCCCCceEeecCCcEEEEeeeccCCC---CeEEE
Q psy15206         57 LHLAIPYTS-----PEAQ--VD------------------TPPVILNNSPQLSVAKEGQSVQLECHAEGHPI---PTISW  108 (232)
Q Consensus        57 ~~~~~~~~~-----~~l~--v~------------------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W  108 (232)
                      |.|......     ..+.  |.                  .+|.+....+....+.+|+.+.|.|.+.|.++   +.+.|
T Consensus       205 Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W  284 (475)
T 1iga_A          205 VTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW  284 (475)
T ss_pred             EEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE
Confidence            444432221     1111  10                  12322222232233568999999999988644   58999


Q ss_pred             EeCCeeeCCCC---------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE---EEeccEEEeccce-ee
Q psy15206        109 RRENNAILPNG---------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK---VEFAPIVTVQSTR-IG  175 (232)
Q Consensus       109 ~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~---v~~~p~~~~~~~~-~~  175 (232)
                       . +..+....         ......+.|.|.++..+|.|.|+|.+.|..+... ....+.   +..+|.+...+.. ..
T Consensus       285 -~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~-~~~~v~~~~~~~~P~v~~~~~~~~~  361 (475)
T 1iga_A          285 -T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTP-LTATLSKSGNTFRPEVHLLPPPSEE  361 (475)
T ss_pred             -C-CCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCc-eEEEeecCCCCCCCeEEEECCChHH
Confidence             4 43332110         0011234699999999999999999999876532 222332   3567777665443 23


Q ss_pred             eeccCeEEEEEEeecCCC--CeEEEeeCCEEecCCC---------------eEE----EEEeccccCCceEEEEecC
Q psy15206        176 QALHHDMDLDCHIEAYPH--PILYWAKDGEIVVNDE---------------YHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       176 ~~~g~~~~l~C~~~~~p~--~~~~W~~~g~~~~~~~---------------~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +..|+.+.|.|.+.|+++  +.|.|+|||..+....               .|.    +.+......|.|.|+|.|.
T Consensus       362 v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~  438 (475)
T 1iga_A          362 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVG  438 (475)
T ss_pred             hccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEE
Confidence            567899999999999744  4899999998764321               222    2233334467899999974

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.89  E-value=9.7e-23  Score=159.18  Aligned_cols=219  Identities=14%  Similarity=0.203  Sum_probs=131.1

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCC-CC-CeEEEEeCcEee------------------------------eeEEE
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGH-PI-PTISWRRNFKRL------------------------------GRLHL   59 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~-p~-~~~~W~~~~~~~------------------------------~~~~~   59 (232)
                      +|.+... +....+.+|++++|.|.+.+. |. +.+.|++++..+                              |.|.|
T Consensus       132 ~P~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dG~Y~C  210 (457)
T 1hzh_H          132 GPSVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYIC  210 (457)
T ss_dssp             CCEEEEE-CCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGTSCCEE
T ss_pred             CCeEEec-CccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCCceEEE
Confidence            6766655 334457899999999999985 64 799999965211                              34455


Q ss_pred             Eeeeec------Cceee-----------------cCCcEEecCCCCceE-eecCCcEEEEeeeccCCCC----eEEEEeC
Q psy15206         60 AIPYTS------PEAQV-----------------DTPPVILNNSPQLSV-AKEGQSVQLECHAEGHPIP----TISWRRE  111 (232)
Q Consensus        60 ~~~~~~------~~l~v-----------------~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~~----~~~W~~~  111 (232)
                      ......      ..+.+                 ..+|.+....+.... +.+|+.+.|.|.+.|.+++    .+.|+++
T Consensus       211 ~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~  290 (457)
T 1hzh_H          211 NVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVD  290 (457)
T ss_dssp             EEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEET
T ss_pred             EEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeC
Confidence            443221      11111                 113333221222222 5579999999999987543    8999999


Q ss_pred             CeeeCCCCcE---EeeCCeEEECC---CCCCC---CeEEEEEeEeCCCCc-eeeEEEE--EEEeccEEEeccceeeeecc
Q psy15206        112 NNAILPNGQT---IFTGSTLQIPR---ITKED---RGAYYCVAQNGIGRG-ARRKIEV--KVEFAPIVTVQSTRIGQALH  179 (232)
Q Consensus       112 ~~~~~~~~~~---~~~~~~l~i~~---~~~~~---~g~y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g  179 (232)
                      +..+......   ...++.+.+..   +...|   .|.|+|.+.|..+.. ....+.+  .+..+|.+...+.......+
T Consensus       291 ~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~  370 (457)
T 1hzh_H          291 GVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTK  370 (457)
T ss_dssp             TEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGS
T ss_pred             CccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCC
Confidence            9876432211   11233343332   33445   999999999764432 2222222  23567877665543322344


Q ss_pred             CeEEEEEEeecCCCC--eEEEeeCCEEecC----------CCeEEE----EEeccccCCceEEEEecC
Q psy15206        180 HDMDLDCHIEAYPHP--ILYWAKDGEIVVN----------DEYHSI----SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       180 ~~~~l~C~~~~~p~~--~~~W~~~g~~~~~----------~~~~~~----~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+.|.|.+.|.+++  .|.|+|||..+..          ++.+.+    .+......|.|.|+|.|.
T Consensus       371 ~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~  438 (457)
T 1hzh_H          371 NQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVM  438 (457)
T ss_dssp             SEEEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEE
T ss_pred             CcEEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEE
Confidence            459999999997554  8999999987642          222322    222333367899999984

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.89  E-value=2e-24  Score=167.68  Aligned_cols=218  Identities=17%  Similarity=0.239  Sum_probs=136.8

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCC-CCC-eEEEEeCcEee-----------------------------eeEEEE
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGH-PIP-TISWRRNFKRL-----------------------------GRLHLA   60 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~-p~~-~~~W~~~~~~~-----------------------------~~~~~~   60 (232)
                      +|.+... ++...+.+|+.++|.|.+.+. |.+ .+.|++++...                             |.|.|.
T Consensus       119 ~P~i~~~-~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dg~Y~C~  197 (434)
T 1igy_B          119 PPSVYPL-APGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCN  197 (434)
T ss_dssp             CCCEEEE-CCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTSSCCEEE
T ss_pred             CCeEEEc-CCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCCCcEEEE
Confidence            5666654 333446899999999999985 665 99999965421                             344444


Q ss_pred             eeeec----Cceee--c-------------CCcEEecCCCCce-EeecCCcEEEEeeeccCC----CCeEEEEeCCeeeC
Q psy15206         61 IPYTS----PEAQV--D-------------TPPVILNNSPQLS-VAKEGQSVQLECHAEGHP----IPTISWRRENNAIL  116 (232)
Q Consensus        61 ~~~~~----~~l~v--~-------------~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~~----~~~~~W~~~~~~~~  116 (232)
                      .....    ....+  .             .+..... .+... .+.+|+.+.|.|.+.|.+    .+.+.|++++..+.
T Consensus       198 a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~-~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~  276 (434)
T 1igy_B          198 VAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIF-PPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVH  276 (434)
T ss_dssp             EECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEE-CCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBC
T ss_pred             EEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEe-CCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccC
Confidence            43221    11111  1             0222222 22211 167899999999999874    34799999987653


Q ss_pred             CCCcE---------EeeCCeEEECCCCCCCCeEEEEEeEeCCCCc-eeeEEEE--EEEeccEEEeccceeeeeccCeEEE
Q psy15206        117 PNGQT---------IFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEV--KVEFAPIVTVQSTRIGQALHHDMDL  184 (232)
Q Consensus       117 ~~~~~---------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l  184 (232)
                      .....         ....+.|.|.++..+|.|.|+|.+.|..+.. ....+.+  .+..+|.+...+.......|+.+.|
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L  356 (434)
T 1igy_B          277 TAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSL  356 (434)
T ss_dssp             CCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEE
T ss_pred             CcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEE
Confidence            22110         1123468999999999999999999876642 1222222  3445777665554333446778999


Q ss_pred             EEEeecCCCC--eEEEeeCCEEecC----------CCeEE----EEEeccccCCceEEEEecC
Q psy15206        185 DCHIEAYPHP--ILYWAKDGEIVVN----------DEYHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       185 ~C~~~~~p~~--~~~W~~~g~~~~~----------~~~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+.|.+++  .|.|+|+|..+..          ++.+.    +.+......|.|.|+|.|.
T Consensus       357 ~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~  419 (434)
T 1igy_B          357 TCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVL  419 (434)
T ss_dssp             EEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEE
T ss_pred             EEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEE
Confidence            9999985433  7999999876532          12232    2333444467999999974

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=5.9e-22  Score=136.77  Aligned_cols=144  Identities=12%  Similarity=0.193  Sum_probs=107.3

Q ss_pred             EeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC--C-cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC-ceeeEEEEE
Q psy15206         85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPN--G-QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR-GARRKIEVK  160 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~--~-~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~  160 (232)
                      .+.+|+++.|.|.+.+ +.+.+.|++++..+...  . ........|.|.+++.+|+|.|+|.+.+..+. ..+..+.+.
T Consensus        14 ~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~   92 (188)
T 1oll_A           14 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV   92 (188)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred             cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEE
Confidence            6789999999999865 34679999998765311  0 01122457999999999999999999875432 234556677


Q ss_pred             EEe---ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec-----CCCeEEEEEeccccCCceEEEEecC
Q psy15206        161 VEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV-----NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       161 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~-----~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |..   +|.+...+ ...+..|++++|.|.+.+. .+.+.|+|+|..+.     ......|.+.++..+|+|.|+|.|.
T Consensus        93 V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~  169 (188)
T 1oll_A           93 VTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS  169 (188)
T ss_dssp             EESCSCCCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             ecccCCCCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCccccccccCCCceeEEEECCCCcCCCcEEEEEEE
Confidence            763   56666555 3467899999999998764 56899999986543     3455678888899999999999974

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.88  E-value=6.8e-22  Score=139.06  Aligned_cols=151  Identities=20%  Similarity=0.304  Sum_probs=110.3

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee------------CCCCcEEee----CCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI------------LPNGQTIFT----GSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~------------~~~~~~~~~----~~~l~i~~~~~~~~g~y~  142 (232)
                      +....+.+|+.+.|.|.+.+.+.+.+.|++++.  .+            ....++...    ...|.|.++..+|.|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence            455678899999999999998888899998532  11            001222221    237999999999999999


Q ss_pred             EEeEeCCCCceeeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeec-CCCC-eEEEeeCCEEecCC---------
Q psy15206        143 CVAQNGIGRGARRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEA-YPHP-ILYWAKDGEIVVND---------  208 (232)
Q Consensus       143 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~g~~~~~~---------  208 (232)
                      |.+.+..+........+.|..   +|.+...+.......|+.+.|.|.+.| .|.+ .+.|+|+|..+...         
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  167 (213)
T 3d9a_L           88 CQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQD  167 (213)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCC
T ss_pred             EeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCcc
Confidence            999987654333334566654   677766554444457999999999987 5655 79999999877543         


Q ss_pred             ---CeE----EEEEeccccCCceEEEEecC
Q psy15206        209 ---EYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ---~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                         ..+    .|.+.++...|+|.|+|.|.
T Consensus       168 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  197 (213)
T 3d9a_L          168 SKDSTYSMSSTLTLTKDEYERHNSYTCEAT  197 (213)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHHCCEEEEEEE
T ss_pred             CCCCCEEEEEEEEEeccccCCCCEEEEEEE
Confidence               122    77778888899999999984

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.88  E-value=1.1e-21  Score=133.96  Aligned_cols=141  Identities=14%  Similarity=0.200  Sum_probs=103.5

Q ss_pred             eEeecCCcEEEEeeecc--CCCCeEEEEeCCeeeC----------CCCcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         84 SVAKEGQSVQLECHAEG--HPIPTISWRRENNAIL----------PNGQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~~~~----------~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      +...+|+++.|.|...+  .+.+.+.|++++..+.          ...+... .+++|.|.++..+|+|.|.|.+.+..+
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g   85 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   85 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence            45678999999995433  4556899999986542          1223322 456799999999999999999999877


Q ss_pred             Cc-eeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEe
Q psy15206        151 RG-ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       151 ~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      .. ....+.|.|..++..     ......+..+.|.|.+.|.|.|.+.|+++|..+....+..+.  .+...|+|.|+|.
T Consensus        86 ~~~~~~~~~l~V~~~~~~-----p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~~~i~--~~~~~d~G~Y~C~  158 (176)
T 1hng_A           86 TRILNKALDLRILEMVSK-----PMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMS--YQWTNLRAPFKCK  158 (176)
T ss_dssp             CEEEEEEEEEEEECCCCC-----CEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEE--EECSCCSSCEEEE
T ss_pred             CEEEEEEEEEEEeCCCCC-----CEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCcEEEE--EEEccCCeEEEEE
Confidence            63 355667777653210     011123446899999999999999999999988766665555  4567999999999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus       159 a~  160 (176)
T 1hng_A          159 AV  160 (176)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.88  E-value=1.6e-21  Score=136.07  Aligned_cols=149  Identities=18%  Similarity=0.308  Sum_probs=106.0

Q ss_pred             CCceEeecCCcEEEEeeeccCCC-----CeEEEEeCCee-eCCCCcEEee-------CCeEEECCCCCCCCeEEEEEeEe
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPI-----PTISWRRENNA-ILPNGQTIFT-------GSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~-----~~~~W~~~~~~-~~~~~~~~~~-------~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      +....+.+|+.+.|.|.+.+.+.     +.+.|++.+.. .....+....       ..+|.|.+++.+|.|.|.|.+.+
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   88 (202)
T 3bp6_B            9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVIC   88 (202)
T ss_dssp             CSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEe
Confidence            34567789999999999988775     78999994333 2222232221       25799999999999999999999


Q ss_pred             CCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec------CCC-eEEEEEecccc
Q psy15206        148 GIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV------NDE-YHSISNFGTSE  220 (232)
Q Consensus       148 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~------~~~-~~~~~~~~~~~  220 (232)
                      ..+. ....+.|.|..++..... .......|+.+.|.|.+.|.|.|.+.|++++..+.      ..+ ...+.+..+..
T Consensus        89 ~~~~-~~~~~~l~V~~~~~~p~~-~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~i~~v~~  166 (202)
T 3bp6_B           89 GAAW-DYKYLTVKVKASYMRIDT-RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKP  166 (202)
T ss_dssp             TTEE-EEEEEEEEEEBCCCCEEE-EEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEEEEECTTSCEEEEEEEEECC
T ss_pred             CCCc-ceEEEEEEecCCCCcccE-EEEecCCCCeEEEEEEccccCCceEEEEeCCCCccCceeeCCCCCEEEEEEEEEEc
Confidence            7765 466777777765321110 01234579999999999999999999999875432      222 24455667778


Q ss_pred             CCceEEEEecC
Q psy15206        221 GTTGSLQCKVP  231 (232)
Q Consensus       221 ~d~g~Y~C~~~  231 (232)
                      .|.|.|+|.|.
T Consensus       167 ~d~G~Y~C~a~  177 (202)
T 3bp6_B          167 QPSRNFSCMFW  177 (202)
T ss_dssp             CTTCCEEEEEE
T ss_pred             CCCCEEEEEEE
Confidence            99999999874

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.88  E-value=9.3e-22  Score=137.26  Aligned_cols=144  Identities=21%  Similarity=0.319  Sum_probs=104.6

Q ss_pred             EeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206         85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      .+.+|+.+.|.|.+.|.|.+.+.|++...... ......  ....|.|.++..+|.|.|.|.+.+..+. ....+.|.|.
T Consensus        12 ~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~-~~~~~~l~V~   89 (202)
T 1vca_A           12 LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-LEKGIQVEIY   89 (202)
T ss_dssp             EEETTSCEEEEEEEESCSSCEEEEEETTCCCC-SSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEcCCCcEEEEEeecCCCCCeEEEECCCCCCc-cceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce-EeeEEEEEEE
Confidence            44589999999999999999999998432211 111111  2346999999999999999999998665 5667888888


Q ss_pred             eccE-EEeccceeeeeccCeEEEEEEeecCCC---CeEEEeeCCEEecCC-----------C--eEEEEEeccccCCceE
Q psy15206        163 FAPI-VTVQSTRIGQALHHDMDLDCHIEAYPH---PILYWAKDGEIVVND-----------E--YHSISNFGTSEGTTGS  225 (232)
Q Consensus       163 ~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~~~W~~~g~~~~~~-----------~--~~~~~~~~~~~~d~g~  225 (232)
                      .+|. +.+.+. ..+..|+.++|.|.+.+.++   +.|.|+|+|..+...           .  ...+.+......|.|+
T Consensus        90 ~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~  168 (202)
T 1vca_A           90 SFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKV  168 (202)
T ss_dssp             BCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCE
T ss_pred             eCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCe
Confidence            7664 233333 56789999999999988643   369999999876421           1  1233455566678899


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |+|+|.
T Consensus       169 ytC~A~  174 (202)
T 1vca_A          169 LVCRAK  174 (202)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999984

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.88  E-value=1.7e-21  Score=137.02  Aligned_cols=149  Identities=20%  Similarity=0.316  Sum_probs=111.3

Q ss_pred             ceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeC------------CCCcEEe----eCCeEEECCCCCCCCeEEEEE
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAIL------------PNGQTIF----TGSTLQIPRITKEDRGAYYCV  144 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~C~  144 (232)
                      ...+.+|+.+.|.|.+.+.+.+.+.|++.  +....            ...++..    ...+|.|.+++.+|.|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            56788999999999999888899999983  21110            1122221    234699999999999999999


Q ss_pred             eEeCCC--CceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecC-CC-CeEEEeeCCEEecCC--------
Q psy15206        145 AQNGIG--RGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAY-PH-PILYWAKDGEIVVND--------  208 (232)
Q Consensus       145 ~~~~~~--~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~g~~~~~~--------  208 (232)
                      +.+..+  ........+.|.    .+|.+...+....+..|+.++|.|.+.|. |+ +.+.|+|+|..+..+        
T Consensus        89 ~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  168 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSK  168 (213)
T ss_dssp             EEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE
T ss_pred             eccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCc
Confidence            999776  234456677777    67888776665556689999999999886 33 389999999987532        


Q ss_pred             --CeEE----EEEeccccCCceEEEEecC
Q psy15206        209 --EYHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 --~~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                        ..+.    +.+..+..+|+|.|+|.|.
T Consensus       169 ~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  197 (213)
T 3mj8_L          169 SDSKYMATSYLTMTADAWKSRNTFICKVT  197 (213)
T ss_dssp             ETTEEEEEEEEEEESHHHHSCSCEEEEEE
T ss_pred             cCCcEEEEEEEEEeHHHcCCCCEEEEEEE
Confidence              2333    5566777789999999984

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.88  E-value=2e-21  Score=134.35  Aligned_cols=155  Identities=28%  Similarity=0.473  Sum_probs=120.5

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------------eeEEEEee
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------------GRLHLAIP   62 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------------~~~~~~~~   62 (232)
                      +..+|.|... +.++.+.+|++++|.|.+.+.|.+.+.|++++..+                          |.|.|...
T Consensus         4 ~~~~P~i~~~-~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            4 LPKAPVITTP-LETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             CCEEEEESSC-CCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEE
T ss_pred             cCCCceeecC-ccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEE
Confidence            4568888877 78888999999999999999888999999954332                          46666653


Q ss_pred             ee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEE-eeCCeEEECCCC
Q psy15206         63 YT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI-FTGSTLQIPRIT  134 (232)
Q Consensus        63 ~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~l~i~~~~  134 (232)
                      ..       ...|.+..+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....+.. ...+.|.|.++.
T Consensus        83 ~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~  161 (192)
T 2iep_A           83 NGVGGAVESCGALQVKMKPKITR-PPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQ  161 (192)
T ss_dssp             CSSSCCEEEEEEEEEEEEEEEEE-CCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCC
T ss_pred             cCCCceeEeEEEEEEEeCCcccc-CCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCC
Confidence            21       34566666666554 4556678899999999999999989999999998876554443 345689999999


Q ss_pred             CCCCeEEEEEeEeCCCCceeeEEEEEEEecc
Q psy15206        135 KEDRGAYYCVAQNGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  165 (232)
                      .+|.|.|+|.+.|..|......+.+.|..+|
T Consensus       162 ~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          162 KEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             GGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             hhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            9999999999999887755566777777654

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.88  E-value=9.3e-22  Score=153.64  Aligned_cols=209  Identities=19%  Similarity=0.259  Sum_probs=129.2

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCc--Ee--------------------e---------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNF--KR--------------------L---------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~--~~--------------------~---------------------   54 (232)
                      +..+.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..                    .                     
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (457)
T 1hzh_H            7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (457)
T ss_dssp             CCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCC
Confidence            5678899999999999998865  6789999831  00                    0                     


Q ss_pred             -----eeEEEEeeee------------------cCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CC-Ce
Q psy15206         55 -----GRLHLAIPYT------------------SPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-PT  105 (232)
Q Consensus        55 -----~~~~~~~~~~------------------~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~  105 (232)
                           |.|.|.....                  ...|.|..    +|.+....+ ...+.+|+.+.|.|.+.+. |. +.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~  165 (457)
T 1hzh_H           87 RSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAP-SSKSTSGGTAALGCLVKDYFPEPVT  165 (457)
T ss_dssp             CGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECC-CSCCCTTCCEEEEEEEESBBSCCCE
T ss_pred             CcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCc-cccccCCCcEEEEEEEeEEeCCCeE
Confidence                 2344433211                  11344443    333322111 2234689999999999886 54 78


Q ss_pred             EEEEeCCeeeCC--------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE----------------
Q psy15206        106 ISWRRENNAILP--------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV----------------  161 (232)
Q Consensus       106 ~~W~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v----------------  161 (232)
                      +.|++++..+..        ........+.|.|.++..+| |.|+|.+.+..+. ......+.+                
T Consensus       166 v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~  243 (457)
T 1hzh_H          166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN-TKVDKKAEPKSCDKTHTCPPCPAPE  243 (457)
T ss_dssp             EEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGT-EEEEEECCCCCSCSSCSCCSCCCCC
T ss_pred             EEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCC-cceeEEecccCCCcccccCCCCCcc
Confidence            999998854311        01111112368999999989 9999999996554 222222221                


Q ss_pred             -EeccEEEec-cceee-eeccCeEEEEEEeecCCCC----eEEEeeCCEEecCC----------CeEEEEEe----cccc
Q psy15206        162 -EFAPIVTVQ-STRIG-QALHHDMDLDCHIEAYPHP----ILYWAKDGEIVVND----------EYHSISNF----GTSE  220 (232)
Q Consensus       162 -~~~p~~~~~-~~~~~-~~~g~~~~l~C~~~~~p~~----~~~W~~~g~~~~~~----------~~~~~~~~----~~~~  220 (232)
                       ..+|.+... +.... +..|+.+.|.|.+.|.|++    .+.|+|+|..+...          +.+.+...    ....
T Consensus       244 ~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~  323 (457)
T 1hzh_H          244 LLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDW  323 (457)
T ss_dssp             CSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHH
T ss_pred             ccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHc
Confidence             124555333 32222 5679999999999998653    89999999776422          22333221    2222


Q ss_pred             CCceEEEEecC
Q psy15206        221 GTTGSLQCKVP  231 (232)
Q Consensus       221 ~d~g~Y~C~~~  231 (232)
                      .|+|.|+|.|.
T Consensus       324 ~d~G~Y~C~a~  334 (457)
T 1hzh_H          324 LNGKEYKCKVS  334 (457)
T ss_dssp             HHTCCEEEEEE
T ss_pred             cCCCcEEEEEe
Confidence            44999999974

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.88  E-value=9.7e-22  Score=141.99  Aligned_cols=190  Identities=19%  Similarity=0.302  Sum_probs=108.4

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEeCcEeeeeEEEEeeeecCceeecCCcEEecCCCCceEeecCCcEEEEeeec
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAE   99 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~   99 (232)
                      .....+..++...+.|.+.+.....                     ..+.+..++.+.. .+....+.+|+.+.|.|.+.
T Consensus         6 ~~~~~v~~~dsg~Y~C~a~g~~~~~---------------------~~~~~~~~~~~~~-~p~~~~v~~G~~v~L~C~~~   63 (254)
T 2c1o_A            6 SGAELVRPGTSVKLSCKASGYSFTN---------------------YWMNWLRELVMTQ-SPLTLSVTIGQPASISCKSS   63 (254)
T ss_dssp             -----------------------------------------------------CCCEEE-ECSEEEECTTSCEEEEEEES
T ss_pred             CCcceecCCccEEEEEcCchhhhhh---------------------hhhheeeceeEEe-CCceEEecCCCcEEEEeecc
Confidence            3455688889999999988422111                     1111111333322 35567888999999999998


Q ss_pred             cCC-----CCeEEEEeCC--eee------------CCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206        100 GHP-----IPTISWRREN--NAI------------LPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRK  156 (232)
Q Consensus       100 ~~~-----~~~~~W~~~~--~~~------------~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  156 (232)
                      +.+     .+.+.|++++  ..+            ....++...    ..+|.|.+++.+|.|.|.|.+.+..+......
T Consensus        64 ~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~  143 (254)
T 2c1o_A           64 QSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAG  143 (254)
T ss_dssp             SCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCC
T ss_pred             CcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCC
Confidence            877     3789999743  211            011233221    22799999999999999999998654322223


Q ss_pred             EEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecC-CC-CeEEEeeCCEEecCC------------C----eEEEEE
Q psy15206        157 IEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAY-PH-PILYWAKDGEIVVND------------E----YHSISN  215 (232)
Q Consensus       157 ~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~g~~~~~~------------~----~~~~~~  215 (232)
                      ..+.|..   +|.+...+.......|+.+.|.|.+.|. |. +.+.|+|+|..+...            .    ...|.+
T Consensus       144 ~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i  223 (254)
T 2c1o_A          144 TKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTL  223 (254)
T ss_dssp             EEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEE
T ss_pred             EEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEe
Confidence            3455543   6777665444344468899999999884 44 359999999876543            1    235667


Q ss_pred             eccccCCceEEEEecC
Q psy15206        216 FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       216 ~~~~~~d~g~Y~C~~~  231 (232)
                      ..+...|+|.|+|.|.
T Consensus       224 ~~~~~~d~G~Y~C~a~  239 (254)
T 2c1o_A          224 TKDEYERHNSYTCEAT  239 (254)
T ss_dssp             EHHHHHTCCEEEEEEE
T ss_pred             ccccccCCCeEEEEEE
Confidence            7777899999999974

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.88  E-value=1.9e-21  Score=136.55  Aligned_cols=161  Identities=27%  Similarity=0.493  Sum_probs=118.3

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe----------------------------------ee
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR----------------------------------LG   55 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~----------------------------------~~   55 (232)
                      ..||.|... +.++.+.+|++++|.|.+.+.|.+.+.|++++..                                  .|
T Consensus         7 ~~pp~i~~~-p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   85 (212)
T 2v9r_A            7 DFPPRIVEH-PSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (212)
T ss_dssp             CEEEEEEEC-CCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred             cCCcceecC-CCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence            458889887 8889999999999999999889899999995322                                  24


Q ss_pred             eEEEEeeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCC-CcEEeeCC
Q psy15206         56 RLHLAIPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPN-GQTIFTGS  126 (232)
Q Consensus        56 ~~~~~~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~-~~~~~~~~  126 (232)
                      .|.|.....       ...|.|...+......+....+..|+.+.|.|.+ .+.|.+.+.|++++..+... .+....++
T Consensus        86 ~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~  165 (212)
T 2v9r_A           86 VYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG  165 (212)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETT
T ss_pred             EEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCC
Confidence            677766321       3445554332222234555678899999999998 88899999999999887643 34555678


Q ss_pred             eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEecc
Q psy15206        127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQS  171 (232)
Q Consensus       127 ~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~  171 (232)
                      .|.|.++..+|.|.|+|.+.|..|...+..+.|.|..+|.+...|
T Consensus       166 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P  210 (212)
T 2v9r_A          166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA  210 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--------
T ss_pred             eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhhc
Confidence            999999999999999999999887644455888898888876554

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.88  E-value=3.6e-21  Score=130.60  Aligned_cols=142  Identities=18%  Similarity=0.251  Sum_probs=110.2

Q ss_pred             CCCceEeecCCcEEEEeeeccCC-CCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      .+....+.+|+.+.|.|.+.+.+ .+.+.|++++..+...      ...+.+.++...|.|.|+|.+.+...   ...+.
T Consensus        10 ~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~------~~~~~~~~~~~~d~G~Y~C~~~~~~~---s~~~~   80 (170)
T 3ry4_A           10 EPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTSL---SDPVH   80 (170)
T ss_dssp             ESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC------CSSEEEEECCGGGCEEEEEEETTSBC---CCCEE
T ss_pred             CCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC------ccceEEEecccccCeEEEEEEeCCCc---eEeEE
Confidence            34445678999999999998876 5689999999887543      33567789999999999999986433   34567


Q ss_pred             EEEEeccEEEeccceeeeeccCeEEEEEEee-cCCCCeEEEeeCCEEec-CCCeEEEEEeccccCCceEEEEecC
Q psy15206        159 VKVEFAPIVTVQSTRIGQALHHDMDLDCHIE-AYPHPILYWAKDGEIVV-NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       159 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~g~~~~-~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|..++.+...+ ...+..|+.+.|.|.+. +.|.+.+.|+++|..+. ......+.+.++..+|+|.|+|.|.
T Consensus        81 l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  154 (170)
T 3ry4_A           81 LTVLFEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGN  154 (170)
T ss_dssp             EEEECCSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESSCCEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEECCceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCeEccccCCCCeEEEEeccccCCEEEEEEEE
Confidence            7777776554443 45677899999999994 55668999999998765 2334567788889999999999874

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.87  E-value=2.3e-21  Score=136.12  Aligned_cols=151  Identities=15%  Similarity=0.260  Sum_probs=108.3

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee------------CCCCcEEee----CCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI------------LPNGQTIFT----GSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~------------~~~~~~~~~----~~~l~i~~~~~~~~g~y~  142 (232)
                      +....+.+|+.+.|.|.+.+.+.+.+.|+++.  ..+            ....++...    ...|.|.+++.+|.|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            55677889999999999998888889999853  211            011232221    237999999999999999


Q ss_pred             EEeEeCCCCceeeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCEEecCC---------
Q psy15206        143 CVAQNGIGRGARRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEIVVND---------  208 (232)
Q Consensus       143 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~~~~~---------  208 (232)
                      |.+.+..+........+.|..   +|.+...+.......|+.+.|.|.+.|. |.+ .+.|+|+|..+...         
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  166 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQD  166 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCcc
Confidence            999986554233334556654   5777665444344579999999999874 444 89999999876533         


Q ss_pred             ---CeE----EEEEeccccCCceEEEEecC
Q psy15206        209 ---EYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ---~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                         +.+    .|.+..+...|+|.|+|.|.
T Consensus       167 ~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  196 (210)
T 1lk3_L          167 SKDSTYSMSSTLSLTKADYESHNLYTCEVV  196 (210)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred             CCCCCEEEEEEEEEChHHhccCCcEEEEEE
Confidence               122    56777778899999999984

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.87  E-value=7e-22  Score=136.14  Aligned_cols=137  Identities=18%  Similarity=0.337  Sum_probs=99.1

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECC-CCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR-ITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~-~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      .....|+.+.|.|.+.+ + +.+.|+++|..+...     .+.+|.|.+ +..+|+|.|+|.+.|..|. ....+.+.|.
T Consensus         9 ~v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~-----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~-~~~~~~~~v~   80 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-D-ENLKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPASNKN-TYLYLKARVG   80 (186)
T ss_dssp             EEEEETTEEEEECSSCC-C-TTCEEEETTEEECSC-----CCSEEEEESCCTTTSCEEEEEECSSCCCC-CCEEECCCCC
T ss_pred             EEEeCCcEEEEEEeCCC-C-CceEEEECCEECCCC-----CCCEEEECCCCccccCEEEEEEEEeCCCc-EEEEEEEEEe
Confidence            44567999999999987 3 349999999887653     245799999 9999999999999987765 3233333322


Q ss_pred             e--ccEE----------------E--ec--cce---eeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC--CCeEEEEE
Q psy15206        163 F--APIV----------------T--VQ--STR---IGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN--DEYHSISN  215 (232)
Q Consensus       163 ~--~p~~----------------~--~~--~~~---~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~--~~~~~~~~  215 (232)
                      .  ++..                .  ..  ...   ..+..|+.+.|.|.+   |.|.|.|+|||..+..  .....|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~~~~~L~i  157 (186)
T 1jbj_A           81 SADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNATKNTWNL  157 (186)
T ss_dssp             SCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSCCSSCCEE
T ss_pred             cccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCCCcceEEE
Confidence            1  1110                0  00  000   123489999999998   7889999999998862  23455666


Q ss_pred             eccccCCceEEEEecC
Q psy15206        216 FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       216 ~~~~~~d~g~Y~C~~~  231 (232)
                      .++...|+|.|+|.|.
T Consensus       158 ~~v~~~D~G~Y~C~a~  173 (186)
T 1jbj_A          158 GNNAKDPRGTYQCQGA  173 (186)
T ss_dssp             EETTSCCEEEEEEEES
T ss_pred             CCCCcCcCEEEEEEEE
Confidence            7888999999999985

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.87  E-value=3.8e-21  Score=136.70  Aligned_cols=149  Identities=22%  Similarity=0.475  Sum_probs=115.1

Q ss_pred             CceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc-----EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-----TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK  156 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  156 (232)
                      ....+.+|+.+.|.|.+.+.|.+.+.|++++..+.....     .......|.|.++...|.|.|+|.+.+..+. ....
T Consensus        27 ~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~-~~~~  105 (231)
T 3ojm_B           27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHT  105 (231)
T ss_dssp             SCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEE
T ss_pred             eeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCc-cccc
Confidence            567788999999999999988889999999988743321     2223457999999999999999999998765 4556


Q ss_pred             EEEEEEec----cEEEe-ccceeeeeccCeEEEEEEeecCCCCeEEEee----CCEEecCCC----------------eE
Q psy15206        157 IEVKVEFA----PIVTV-QSTRIGQALHHDMDLDCHIEAYPHPILYWAK----DGEIVVNDE----------------YH  211 (232)
Q Consensus       157 ~~l~v~~~----p~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~----~g~~~~~~~----------------~~  211 (232)
                      ..+.|...    |.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++    +|..+..+.                ..
T Consensus       106 ~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  185 (231)
T 3ojm_B          106 YHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAE  185 (231)
T ss_dssp             EEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTT
T ss_pred             EEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCcc
Confidence            67777642    33322 2456678889999999999999999999999    666543221                23


Q ss_pred             EEEEeccccCCceEEEEecC
Q psy15206        212 SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       212 ~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+.++...|+|.|+|.|.
T Consensus       186 ~L~i~~~~~~d~G~Y~C~a~  205 (231)
T 3ojm_B          186 VLALFNVTEADAGEYICKVS  205 (231)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEecCCHHHCeEEEEEEE
Confidence            47777888899999999974

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.87  E-value=6e-21  Score=131.18  Aligned_cols=141  Identities=15%  Similarity=0.260  Sum_probs=108.6

Q ss_pred             eEeecCCcEEEEeeeccCCCC--eEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIP--TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      ..+.+|+.+.|.|.+.+.+.+  .+.|++++..+...... .....|.|.  ..+|.|.|+|.+.+.    ....+.+.|
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-~~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~~l~V   80 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-GQKTEFKVD--SDDQWGEYSCVFLPE----PMGTANIQL   80 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-CSEEEEEEC--GGGCCEEEEEEEEST----TSCEEEEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-CCcEEEEEe--chhhCeEEEEEEECC----cCcEEEEEE
Confidence            456789999999999887766  89999999877543221 112245555  688999999999972    235668888


Q ss_pred             EeccEEEeccceeeeeccCeEEEEEEeecCC-CCeEEEee---CCEE-ecCC--C---------eEEEEEeccc-cCCce
Q psy15206        162 EFAPIVTVQSTRIGQALHHDMDLDCHIEAYP-HPILYWAK---DGEI-VVND--E---------YHSISNFGTS-EGTTG  224 (232)
Q Consensus       162 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~---~g~~-~~~~--~---------~~~~~~~~~~-~~d~g  224 (232)
                      ..+|.+...+....+..|+.+.|.|.+.|.| .+.+.|++   ++.. +...  .         ...|.+.++. ..|+|
T Consensus        81 ~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G  160 (184)
T 3b5h_A           81 HGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPG  160 (184)
T ss_dssp             CCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSE
T ss_pred             ecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCc
Confidence            8899888888777888999999999999999 78999999   4543 3321  2         2367777888 79999


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      .|+|.|.
T Consensus       161 ~Y~C~a~  167 (184)
T 3b5h_A          161 QYRCNGT  167 (184)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            9999874

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.87  E-value=1.8e-20  Score=131.73  Aligned_cols=153  Identities=28%  Similarity=0.511  Sum_probs=117.8

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee------------------------------eeEEE
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------------------------GRLHL   59 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~------------------------------~~~~~   59 (232)
                      ..||.|... +.+..+.+|++++|.|.+.+.|.+.+.|++++..+                              |.|.|
T Consensus         4 ~~pP~~~~~-p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   82 (212)
T 2yd1_A            4 AHPPEIIRK-PQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC   82 (212)
T ss_dssp             -CCCEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred             CCCCEEEcC-CCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence            468999998 88899999999999999999999999999954322                              34666


Q ss_pred             Eeeee-------cCceeecCC-------cEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC-CCcEEee
Q psy15206         60 AIPYT-------SPEAQVDTP-------PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP-NGQTIFT  124 (232)
Q Consensus        60 ~~~~~-------~~~l~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~~~~~~  124 (232)
                      .....       .+.|.|..+       |.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+.. .......
T Consensus        83 ~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~  161 (212)
T 2yd1_A           83 VAENGVGDAVSADATLTIYEGDKTPAGFPVITQ-GPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK  161 (212)
T ss_dssp             EEECSSSCEEEEEEEEEEECTTCSCTTCCEEEE-CCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEE
T ss_pred             EEEeCCCCeEEeeEEEEEecccCCCCCCCeeEe-CCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEcc
Confidence            55221       445555543       44443 44556777899999999999999999999999988764 3345566


Q ss_pred             CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEec
Q psy15206        125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFA  164 (232)
Q Consensus       125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~  164 (232)
                      ++.|.|.++..+|.|.|+|.+.|..|......+.|.|...
T Consensus       162 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~  201 (212)
T 2yd1_A          162 DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVR  201 (212)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             CCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEec
Confidence            7799999999999999999999988874444567777654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.87  E-value=1.3e-20  Score=132.50  Aligned_cols=157  Identities=25%  Similarity=0.405  Sum_probs=116.1

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee-----------------------------eeEEE
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-----------------------------GRLHL   59 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~-----------------------------~~~~~   59 (232)
                      +..+|.|... +.+..+.+|++++|.|.+.+.|.+.+.|++++..+                             |.|+|
T Consensus         3 ~~~~P~~~~~-p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   81 (212)
T 2yd6_A            3 GETPPRFTRT-PVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC   81 (212)
T ss_dssp             -CEEEEEEEC-CCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEE
T ss_pred             CCCCCeEEeC-cceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEE
Confidence            4678999988 88899999999999999999899999999954321                             35666


Q ss_pred             Eeeee------cCceeecCC-------cEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC---CcEEe
Q psy15206         60 AIPYT------SPEAQVDTP-------PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN---GQTIF  123 (232)
Q Consensus        60 ~~~~~------~~~l~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~---~~~~~  123 (232)
                      .....      .+.|.|..+       |.+.. .+....+..|+.+.|.|.+.|.|.+.+.|++++..+...   .+...
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~  160 (212)
T 2yd6_A           82 VASNNVGEISVSTRLTVLREDQIPRGFPTIDM-GPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQ  160 (212)
T ss_dssp             EEEETTEEEEEEEEEEEECGGGCCTTCCEEEE-CCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEE
T ss_pred             EEEcCCCcEEEEEEEEEeccCccCCCcceeec-CCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEE
Confidence            54222      445555432       33433 455567788999999999999999999999999887543   12221


Q ss_pred             ----eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEE
Q psy15206        124 ----TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIV  167 (232)
Q Consensus       124 ----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  167 (232)
                          ..+.|.|.++..+|.|.|+|.+.|..|...+..+.+.+...+..
T Consensus       161 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~  208 (212)
T 2yd6_A          161 LRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH  208 (212)
T ss_dssp             EEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred             EecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecccc
Confidence                13689999999999999999999999887777788888776654

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.87  E-value=4.6e-21  Score=136.36  Aligned_cols=152  Identities=16%  Similarity=0.256  Sum_probs=111.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCCC-CeEEEEeCCeeeC---------C----CCcE-----------EeeCCeEEECCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPI-PTISWRRENNAIL---------P----NGQT-----------IFTGSTLQIPRIT  134 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~---------~----~~~~-----------~~~~~~l~i~~~~  134 (232)
                      .+....+.+|+.+.|.|.+.+.+. +.+.|++++....         .    ..+.           ...++.|.|.+++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            355667889999999999988875 7899997654311         0    0111           2223569999999


Q ss_pred             CCCCeEEEEEeEeCCCCceeeEEEEEEEec---cEEEeccceeeeeccCeE-EEEEEe-ecCCCCeEEEeeCCEEecCCC
Q psy15206        135 KEDRGAYYCVAQNGIGRGARRKIEVKVEFA---PIVTVQSTRIGQALHHDM-DLDCHI-EAYPHPILYWAKDGEIVVNDE  209 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~~~W~~~g~~~~~~~  209 (232)
                      .+|.|.|.|.+.+.........+.+.|..+   |.+...+....+..|+.+ .|.|.+ .+.|.+.+.|+++|..+....
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~  165 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPV  165 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCS
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccc
Confidence            999999999999876233567778888766   445555555566788888 999999 899999999999998876544


Q ss_pred             ----e------------------EEEEEeccccCCceEEEEecC
Q psy15206        210 ----Y------------------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 ----~------------------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                          +                  ..+.+......|+|.|+|.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~  209 (231)
T 2pet_A          166 EMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAH  209 (231)
T ss_dssp             SCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEE
T ss_pred             ccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEE
Confidence                2                  224444445456999999974

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.87  E-value=2.5e-21  Score=142.42  Aligned_cols=151  Identities=20%  Similarity=0.356  Sum_probs=117.7

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEe-CCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRR-ENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGAR  154 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~-~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  154 (232)
                      .+....+.+|+.+.|.|.+.+.|. .+.|++ ++..+....+....    ...|.|.++..+|.|.|+|.+.+..+....
T Consensus        10 ~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~   88 (291)
T 2wim_A           10 SLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE   88 (291)
T ss_dssp             SCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEE
T ss_pred             eccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEE
Confidence            566778889999999999988764 899999 56555444443322    237999999999999999999998777556


Q ss_pred             eEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC--CCe------EEEEEeccccCCceEE
Q psy15206        155 RKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN--DEY------HSISNFGTSEGTTGSL  226 (232)
Q Consensus       155 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~--~~~------~~~~~~~~~~~d~g~Y  226 (232)
                      ..+.+.|..+|.+...+....+..|+.+.|.|.+.+.|.+.+.|++++..+..  ..+      ..+.+.++...|+|.|
T Consensus        89 ~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  168 (291)
T 2wim_A           89 ATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIY  168 (291)
T ss_dssp             EEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEE
T ss_pred             EEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEE
Confidence            67788888888777667777888999999999999999999999999877652  222      2466778888999999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      +|.+.
T Consensus       169 ~C~~~  173 (291)
T 2wim_A          169 RCEGR  173 (291)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99873

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.87  E-value=8.8e-21  Score=132.81  Aligned_cols=145  Identities=18%  Similarity=0.293  Sum_probs=109.4

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC-------------------CCcE-EeeCCeEEECCCCCCCCeEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILP-------------------NGQT-IFTGSTLQIPRITKEDRGAYYC  143 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-------------------~~~~-~~~~~~l~i~~~~~~~~g~y~C  143 (232)
                      ..+.+|+.+.|.|...+.+.+.+.|++++.....                   ..+. ...+++|.|.+++..|.|.|+|
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C   88 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTL   88 (208)
T ss_dssp             SEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEE
T ss_pred             ceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEE
Confidence            4567899999999987788889999987532110                   1111 2224579999999999999999


Q ss_pred             EeEeCCCCceeeEEEEEEEec---cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe-------EEE
Q psy15206        144 VAQNGIGRGARRKIEVKVEFA---PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY-------HSI  213 (232)
Q Consensus       144 ~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~-------~~~  213 (232)
                      .+.+..+......+.+.|..+   |.+...+..  +..|+.+.|.|.+.+.| +.+.|+++|..+....+       ..|
T Consensus        89 ~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~~~L  165 (208)
T 3r4d_A           89 DMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSIL  165 (208)
T ss_dssp             EEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETTTTEE
T ss_pred             EEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCCCEE
Confidence            999875444566677777654   455544443  77899999999999876 79999999988775433       356


Q ss_pred             EEeccccCCceEEEEecC
Q psy15206        214 SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       214 ~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.++...|+|.|+|.|.
T Consensus       166 ~i~~v~~~d~G~Y~C~a~  183 (208)
T 3r4d_A          166 RIDPIKREDAGEYQCEIS  183 (208)
T ss_dssp             EESSCCGGGCEEEEEEEE
T ss_pred             EEeccCHHhCeEEEEEEe
Confidence            667788899999999974

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.87  E-value=3.5e-21  Score=135.29  Aligned_cols=149  Identities=21%  Similarity=0.306  Sum_probs=112.0

Q ss_pred             CceEeecCCcEEEEeeeccCC----CCeEEEEeC----------------CeeeCC-----CCcEEe-------eCCeEE
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP----IPTISWRRE----------------NNAILP-----NGQTIF-------TGSTLQ  129 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~----------------~~~~~~-----~~~~~~-------~~~~l~  129 (232)
                      ....+.+|+.+.|.|.+.+.+    .+.+.|++.                +.....     ..+...       ...+|.
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   87 (214)
T 3jz7_A            8 QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASIN   87 (214)
T ss_dssp             EEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEE
T ss_pred             ceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEE
Confidence            445677899999999998766    458999983                333221     222222       235799


Q ss_pred             ECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCC--EEec
Q psy15206        130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDG--EIVV  206 (232)
Q Consensus       130 i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g--~~~~  206 (232)
                      |.+++.+|.|.|.|.+.+..+. ....+.|.|..+|.+...+....+..|+.+.|.|.+ .+.|.+.+.|++++  ..+.
T Consensus        88 i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~  166 (214)
T 3jz7_A           88 VTNLQLSDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP  166 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCC
T ss_pred             EccCChhhCeEEEEEEEeCCCc-cccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccC
Confidence            9999999999999999987665 567788888887765544444457789999999999 89999999999954  3332


Q ss_pred             -----CCCeEEEEEeccccCCceEEEEecC
Q psy15206        207 -----NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 -----~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                           ....-.|.+.++...|+|.|+|.|.
T Consensus       167 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  196 (214)
T 3jz7_A          167 TPWLAEMTSPVISVKNASSEYSGTYSCTVQ  196 (214)
T ss_dssp             GGGGGGTTSSEEEECSCCGGGCEEEEEEEE
T ss_pred             ccceeccCCCEEEEecCCHHHCEEEEEEEE
Confidence                 1123478888899999999999974

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.87  E-value=3.5e-21  Score=134.27  Aligned_cols=143  Identities=14%  Similarity=0.188  Sum_probs=103.5

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc---E--EeeCCeEEECCCCCCCCeEEEEEeEeCC----CCcee
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ---T--IFTGSTLQIPRITKEDRGAYYCVAQNGI----GRGAR  154 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~---~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~----~~~~~  154 (232)
                      ..+.+|+++.|.|.+.+ +.+.+.|+++|..+.....   .  ......|.|.+++.+|+|.|+|.+.+..    ....+
T Consensus        17 ~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s   95 (201)
T 1nkr_A           17 PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPS   95 (201)
T ss_dssp             SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCC
T ss_pred             CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCCC
Confidence            56779999999999964 6678999999875421110   0  1124579999999999999999998642    12234


Q ss_pred             eEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC--------C--CeEEEEEeccccC
Q psy15206        155 RKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN--------D--EYHSISNFGTSEG  221 (232)
Q Consensus       155 ~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~--------~--~~~~~~~~~~~~~  221 (232)
                      ..+.+.|..   +|.+...+. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+..        .  ....|.+.+++  
T Consensus        96 ~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--  171 (201)
T 1nkr_A           96 DPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--  171 (201)
T ss_dssp             CCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--
T ss_pred             CCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--
Confidence            556666654   466666555 46789999999999976 5678999999865432        1  14456677776  


Q ss_pred             CceEEEEecC
Q psy15206        222 TTGSLQCKVP  231 (232)
Q Consensus       222 d~g~Y~C~~~  231 (232)
                      |+|.|+|.|.
T Consensus       172 d~G~Y~C~a~  181 (201)
T 1nkr_A          172 HGGTYRCFGS  181 (201)
T ss_dssp             SCEEEEEEEE
T ss_pred             CCeeEEEEEE
Confidence            9999999975

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.86  E-value=4.6e-21  Score=137.97  Aligned_cols=152  Identities=17%  Similarity=0.276  Sum_probs=112.3

Q ss_pred             CCCceEeecCCcEEEEeeecc---CCCCeEEEEeCCeeeC------------------------------CCCcEEee--
Q psy15206         80 SPQLSVAKEGQSVQLECHAEG---HPIPTISWRRENNAIL------------------------------PNGQTIFT--  124 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~---~~~~~~~W~~~~~~~~------------------------------~~~~~~~~--  124 (232)
                      .+....+.+|+.+.|.|.+.+   .+.+.+.|++++....                              ...+....  
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~   87 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANL   87 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCT
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccC
Confidence            344567889999999999887   6778899999864320                              01111111  


Q ss_pred             -CCeEEECCCCCCCCeEEEEEeEeCCCCc----eeeEEEEEEEec---cEEEec-cceeeeeccCeEEEEEEeecCCCCe
Q psy15206        125 -GSTLQIPRITKEDRGAYYCVAQNGIGRG----ARRKIEVKVEFA---PIVTVQ-STRIGQALHHDMDLDCHIEAYPHPI  195 (232)
Q Consensus       125 -~~~l~i~~~~~~~~g~y~C~~~~~~~~~----~~~~~~l~v~~~---p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~  195 (232)
                       ...|.|.+++.+|.|.|.|.+.+..+..    ....+.|.|..+   |.+... +....+..|+.+.|.|.+.+.|.|.
T Consensus        88 ~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~  167 (250)
T 2fbo_J           88 AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN  167 (250)
T ss_dssp             TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCE
T ss_pred             CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCe
Confidence             2479999999999999999999876542    134677777653   333333 4456677899999999999999999


Q ss_pred             EEEeeCCEEecCC------------------------------CeEEEEEeccccCCceEEEEecC
Q psy15206        196 LYWAKDGEIVVND------------------------------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       196 ~~W~~~g~~~~~~------------------------------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|+|++..+...                              ....|.+.++..+|+|.|+|.|.
T Consensus       168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~  233 (250)
T 2fbo_J          168 VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELA  233 (250)
T ss_dssp             EEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEE
T ss_pred             eEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEec
Confidence            9999998755321                              12477888889999999999974

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.86  E-value=7.5e-22  Score=148.90  Aligned_cols=156  Identities=17%  Similarity=0.272  Sum_probs=120.0

Q ss_pred             ecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEeeCCeEEECCCCCCCCe-EEEEEeE
Q psy15206         70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFTGSTLQIPRITKEDRG-AYYCVAQ  146 (232)
Q Consensus        70 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~g-~y~C~~~  146 (232)
                      +..+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....  ......+.|.|.++...|.| .|+|.+.
T Consensus       155 ~c~~P~i~~-~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~  233 (347)
T 2ifg_A          155 SCGVPTLKV-QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAE  233 (347)
T ss_dssp             TCCCCEEEE-ECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             cCCCCceec-cCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEE
Confidence            334565543 4555678899999999999999999999999886543211  11223457999999999999 9999999


Q ss_pred             eCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe----------------
Q psy15206        147 NGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY----------------  210 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~----------------  210 (232)
                      +..|. ....+.+.|..+|.+    .......|+.+.|.|.+.|.|.|.+.|+++|..+.....                
T Consensus       234 n~~g~-~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~  308 (347)
T 2ifg_A          234 NDVGR-AEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRH  308 (347)
T ss_dssp             ETTEE-CCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEE
T ss_pred             cCCCC-EEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccc
Confidence            98766 356677777777776    122345789999999999999999999999988774432                


Q ss_pred             EEEEEeccccCCceEEEEecC
Q psy15206        211 HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       211 ~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+.+.++...|+|.|+|.|.
T Consensus       309 ~~L~I~~v~~~d~G~Y~C~a~  329 (347)
T 2ifg_A          309 GCLRLNQPTHVNNGNYTLLAA  329 (347)
T ss_dssp             EEEEESSCCGGGCEEEEEEEE
T ss_pred             eEEEECCCCcccCceEEEEEe
Confidence            237777888899999999974

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.86  E-value=1e-20  Score=132.93  Aligned_cols=151  Identities=17%  Similarity=0.231  Sum_probs=105.9

Q ss_pred             CCceEeecCCcEEEEeeeccCC---CCeEEEEeCC--eee------------CCCCcEEee----CCeEEECCCCCCCCe
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP---IPTISWRREN--NAI------------LPNGQTIFT----GSTLQIPRITKEDRG  139 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~--~~~------------~~~~~~~~~----~~~l~i~~~~~~~~g  139 (232)
                      +....+.+|+.+.|.|.+.+.+   .+.+.|++++  ..+            ....++...    ...|.|.+++.+|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            4556788999999999998876   4689999863  221            011233221    237999999999999


Q ss_pred             EEEEEeEeCCCCceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecCC-----
Q psy15206        140 AYYCVAQNGIGRGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVND-----  208 (232)
Q Consensus       140 ~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~-----  208 (232)
                      .|.|.+.+..+........+.|.    .+|.+...+.......|+.++|.|.+.|.+++  .+.|+|+|..+..+     
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~  166 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQ  166 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCC
Confidence            99999998654322233455553    46777665544445578899999999886443  89999999877532     


Q ss_pred             ------CeE----EEEEeccccCCceEEEEecC
Q psy15206        209 ------EYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ------~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                            ..+    .+.+......|+|.|+|.|.
T Consensus       167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~  199 (212)
T 1q0x_L          167 PSKQSNNKYMASSYLTLTARAWERHSSYSCQVT  199 (212)
T ss_dssp             CEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEE
T ss_pred             ceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEE
Confidence                  111    35566666789999999974

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.86  E-value=2.6e-20  Score=134.87  Aligned_cols=142  Identities=15%  Similarity=0.217  Sum_probs=113.4

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      .+....+.+|+.+.|.|.+.+.+.+ .+.|++++..+...      ...|.|.++..+|.|.|+|.+.+..++   ..+.
T Consensus         7 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~------~~~l~i~~~~~~d~G~Y~C~~~~~~~s---~~~~   77 (262)
T 3rjd_A            7 QPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------TPSYRITSASVNDSGEYRCQRGLSGRS---DPIQ   77 (262)
T ss_dssp             SSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC------SSEEEESSCCGGGCEEEEEEESSSCCC---CCEE
T ss_pred             CCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc------CCeEEEecCCcccCeEEEEEEecCCcc---ccEE
Confidence            4555678899999999999988877 89999999876432      467999999999999999999876543   3566


Q ss_pred             EEEEeccEEEeccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCC-CeEEEEEeccccCCceEEEEecC
Q psy15206        159 VKVEFAPIVTVQSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVND-EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       159 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|..++.. ..+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+... ....+.+.++...|+|.|+|.+.
T Consensus        78 l~v~~~~~~-~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~  151 (262)
T 3rjd_A           78 LEIHRGWLL-LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGM  151 (262)
T ss_dssp             EEEECSSEE-EEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEeccceE-ecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCCCCeEEEEECChhhCEEEEEEEe
Confidence            777766544 34455667899999999999 77888899999999887643 24466777888899999999874

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.86  E-value=6e-21  Score=134.31  Aligned_cols=150  Identities=13%  Similarity=0.123  Sum_probs=105.3

Q ss_pred             CCceEeecC--CcEEEEeeeccCCCCeEEEEeC---CeeeCCCCcEE-eeCCeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206         81 PQLSVAKEG--QSVQLECHAEGHPIPTISWRRE---NNAILPNGQTI-FTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR  154 (232)
Q Consensus        81 ~~~~~~~~g--~~~~l~C~~~~~~~~~~~W~~~---~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  154 (232)
                      +....+.+|  +.+.|.|.+.+ |.+.+.|++.   +..+....... .....|.|.++..+|+|.|+|.+.+..+...+
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s   92 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS   92 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEEC
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEE
Confidence            355678889  99999999976 6688999885   44433322222 33567999999999999999999885443333


Q ss_pred             eEEEEEEEe--ccEEEeccce-eeeeccCeEEEEEEeecCCC--CeEEEeeCCEEecC-----------------CCeEE
Q psy15206        155 RKIEVKVEF--APIVTVQSTR-IGQALHHDMDLDCHIEAYPH--PILYWAKDGEIVVN-----------------DEYHS  212 (232)
Q Consensus       155 ~~~~l~v~~--~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g~~~~~-----------------~~~~~  212 (232)
                      ..+.+.|..  +|.+...+.. ..+..|++++|.|.+.|.|.  +.+.|+++|..+..                 .....
T Consensus        93 ~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (213)
T 2x1w_L           93 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST  172 (213)
T ss_dssp             CCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEE
T ss_pred             EEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEE
Confidence            335666643  4445554443 47889999999999998654  47999998754211                 11235


Q ss_pred             EEEeccccCCceEEEEecC
Q psy15206        213 ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       213 ~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.+.++..+|+|.|+|.|.
T Consensus       173 L~I~~v~~~D~G~Y~C~a~  191 (213)
T 2x1w_L          173 LTIDGVTRSDQGLYTCAAS  191 (213)
T ss_dssp             EEESSCCGGGCEEEEEEEE
T ss_pred             EEECCCCcccCEEEEEEEe
Confidence            7888899999999999874

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.86  E-value=9.3e-20  Score=143.01  Aligned_cols=209  Identities=16%  Similarity=0.276  Sum_probs=129.5

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCcEe----------------------ee--------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNFKR----------------------LG--------------------   55 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~~~----------------------~~--------------------   55 (232)
                      +.++.+.+|++++|.|.+.+.+  ...+.|+|+...                      .+                    
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (475)
T 1iga_A            8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSL   87 (475)
T ss_pred             CCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCC
Confidence            6788999999999999998754  678999984210                      11                    


Q ss_pred             ------eEEEEeeee------------cCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CC-C-eEEEEe
Q psy15206         56 ------RLHLAIPYT------------SPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-P-TISWRR  110 (232)
Q Consensus        56 ------~~~~~~~~~------------~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~-~~~W~~  110 (232)
                            .|.|.....            ...|.|..    +|.+....+.  ...+|+.+.|.|.+.|. |. + .+.|++
T Consensus        88 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~--~~~~g~~v~L~C~~~g~~P~~p~~v~W~~  165 (475)
T 1iga_A           88 RPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC--STQPDGNVVIACLVQGFFPQEPLSVTWSE  165 (475)
T ss_pred             ChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc--ccCCCCeEEEEEEEeeecCCCceEEEEcC
Confidence                  222322110            12344432    2322221111  12579999999999986 55 4 899998


Q ss_pred             CCeeeCC---------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE------------------e
Q psy15206        111 ENNAILP---------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE------------------F  163 (232)
Q Consensus       111 ~~~~~~~---------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~------------------~  163 (232)
                      ++.....         ........+.|.|..+...|.|.|+|.+.+..+......+.+.|.                  .
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~  245 (475)
T 1iga_A          166 SGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCC  245 (475)
T ss_pred             CCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCC
Confidence            8743210         001111123588888888999999999999765433333333221                  2


Q ss_pred             ccEEEec-cceeeeeccCeEEEEEEeecCCC---CeEEEeeCCEEec---------CCCe----EEEEEeccccCCceEE
Q psy15206        164 APIVTVQ-STRIGQALHHDMDLDCHIEAYPH---PILYWAKDGEIVV---------NDEY----HSISNFGTSEGTTGSL  226 (232)
Q Consensus       164 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~---~~~~W~~~g~~~~---------~~~~----~~~~~~~~~~~d~g~Y  226 (232)
                      +|.+... +....+..|+.+.|.|.+.|.++   +.+.| +++....         .++.    ..|.+.++...|+|.|
T Consensus       246 ~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y  324 (475)
T 1iga_A          246 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTF  324 (475)
T ss_pred             CcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcE
Confidence            4554333 33333578999999999998754   58999 4332211         0111    2467778888999999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      +|.|.
T Consensus       325 ~C~a~  329 (475)
T 1iga_A          325 TCTAA  329 (475)
T ss_pred             EEEEE
Confidence            99974

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.85  E-value=2.4e-20  Score=129.12  Aligned_cols=149  Identities=29%  Similarity=0.489  Sum_probs=112.3

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee-----------------------------eeEEEE
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-----------------------------GRLHLA   60 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~-----------------------------~~~~~~   60 (232)
                      ..+|.|... +.+..+.+|++++|.|.+.+.|.+.+.|++++..+                             |.|.|.
T Consensus         3 ~~~P~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (194)
T 2a38_A            3 TQAPTFTQP-LQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK   81 (194)
T ss_dssp             CEEEEEEEC-CCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCeEEcc-CCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            458999887 88899999999999999999898999999954321                             356665


Q ss_pred             eeee------cCceeec---CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee--C--Ce
Q psy15206         61 IPYT------SPEAQVD---TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--G--ST  127 (232)
Q Consensus        61 ~~~~------~~~l~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~--~~  127 (232)
                      ....      ...|.|.   .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....+....  +  ..
T Consensus        82 ~~n~~~~~~~~~~l~v~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  160 (194)
T 2a38_A           82 ATNGSGQATSTAELLVKAETAPPNFVQ-RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYS  160 (194)
T ss_dssp             EEETTEEEEEEEEEEEECCCEEEEEEE-CCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEE
T ss_pred             EEcCCceEeEEEEEEEccCCCCCEEEe-CCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEE
Confidence            5221      4455554   2343333 455667888999999999999999999999999887655444332  2  27


Q ss_pred             EEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206        128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus       128 l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      |.|.++..+|.|.|+|.+.|..|. ....+.+.|
T Consensus       161 L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V  193 (194)
T 2a38_A          161 LLIAEAYPEDSGTYSVNATNSVGR-ATSTAELLV  193 (194)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             EEECCCChhcCeEEEEEEEeCCCc-eEEEEEEEE
Confidence            999999999999999999998876 445555554

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.85  E-value=6.2e-20  Score=127.38  Aligned_cols=150  Identities=23%  Similarity=0.413  Sum_probs=113.1

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee-----------------------------eeEEEEe
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-----------------------------GRLHLAI   61 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~-----------------------------~~~~~~~   61 (232)
                      .+|.|... +.+..+.+|++++|.|.+.+.|.+.+.|++++..+                             |.|.|..
T Consensus         3 ~~P~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (197)
T 2j8h_A            3 MAPHFKEE-LRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRA   81 (197)
T ss_dssp             CCCEEEEC-CCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEE
T ss_pred             CCCEEEEc-CCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEE
Confidence            58999888 88899999999999999999999999999954332                             2455544


Q ss_pred             ee------ecCceeecCCcEEecC----CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe----eCCe
Q psy15206         62 PY------TSPEAQVDTPPVILNN----SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGST  127 (232)
Q Consensus        62 ~~------~~~~l~v~~~p~~~~~----~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~----~~~~  127 (232)
                      ..      ....|.|..+|.....    .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....+...    ....
T Consensus        82 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~  161 (197)
T 2j8h_A           82 TNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTS  161 (197)
T ss_dssp             EETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEE
T ss_pred             EECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceE
Confidence            21      1555666655544321    12345677899999999999999999999999988765444332    2357


Q ss_pred             EEECC-CCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        128 LQIPR-ITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       128 l~i~~-~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      |.|.+ +..+|.|.|+|.+.|..|. ....+.|.|.
T Consensus       162 L~i~~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~  196 (197)
T 2j8h_A          162 LVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDVA  196 (197)
T ss_dssp             EECTTCCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEeCCCCcccCEeEEEEEEeCCCc-EeEEEEEEEe
Confidence            99999 9999999999999998876 5566666653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.85  E-value=4.8e-20  Score=133.27  Aligned_cols=151  Identities=19%  Similarity=0.271  Sum_probs=111.7

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eeeC-----------------CCCcEEee------CCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAIL-----------------PNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~  133 (232)
                      +....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..+.                 ...++...      ..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL   86 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence            4456778999999999998865  5689999842  2210                 11233222      237999999


Q ss_pred             CCCCCeEEEEEeEeCCCC----ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCC-----eEEEee--CC
Q psy15206        134 TKEDRGAYYCVAQNGIGR----GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP-----ILYWAK--DG  202 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-----~~~W~~--~g  202 (232)
                      +.+|+|.|.|.+.+..+.    .......|.|..+|.+...+....+..|++++|.|.+.+.|.+     .+.|+|  +|
T Consensus        87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g  166 (256)
T 1nqb_A           87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPG  166 (256)
T ss_dssp             CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTT
T ss_pred             ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCC
Confidence            999999999999987542    1223457777777777777777788999999999999998875     899999  55


Q ss_pred             EEec---------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        203 EIVV---------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       203 ~~~~---------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+.                     ....+.|.+.++..+|+|.|+|.|.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  216 (256)
T 1nqb_A          167 QSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQG  216 (256)
T ss_dssp             SCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             CCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEc
Confidence            4321                     1134568888899999999999984

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.85  E-value=1.6e-20  Score=129.13  Aligned_cols=139  Identities=17%  Similarity=0.237  Sum_probs=104.5

Q ss_pred             ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC--------------CCcEEee-------CCeEEECCCCCCCCeEE
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP--------------NGQTIFT-------GSTLQIPRITKEDRGAY  141 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~--------------~~~~~~~-------~~~l~i~~~~~~~~g~y  141 (232)
                      ...+.+|+.+.|.|.+.+.+.+.+.|++++.....              ..+....       ..+|.|.+++.+|.|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            35677899999999998888889999998753110              1112211       33599999999999999


Q ss_pred             EEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccC
Q psy15206        142 YCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEG  221 (232)
Q Consensus       142 ~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~  221 (232)
                      .|.+.+..+     .+.+.|..   +.. +....+..|+++.|.|.+.+.|.+.+.|+++|..+.. ....|.+.++...
T Consensus        84 ~C~~~~~~~-----~~~l~V~~---~~~-~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~L~i~~v~~~  153 (184)
T 2ny1_B           84 ICEVEDQKE-----EVQLLVFG---LTA-NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ-GGKTLSVSQLELQ  153 (184)
T ss_dssp             EEEETTEEE-----EEEEEEEE---EEE-SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE-ESSEEEESSCCGG
T ss_pred             EEEEEcCCC-----cEEEEEEE---ecC-CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc-CceEEEEecCCcC
Confidence            999986532     34555553   222 4445678999999999999999999999999865533 3456777888999


Q ss_pred             CceEEEEecC
Q psy15206        222 TTGSLQCKVP  231 (232)
Q Consensus       222 d~g~Y~C~~~  231 (232)
                      |+|.|+|.|.
T Consensus       154 d~G~Y~C~a~  163 (184)
T 2ny1_B          154 DSGTWTCTVL  163 (184)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCeEEEEEEE
Confidence            9999999874

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.85  E-value=1.2e-20  Score=133.15  Aligned_cols=149  Identities=19%  Similarity=0.265  Sum_probs=104.5

Q ss_pred             ceEeecCCcEEEEeeeccC-CCCeEEEEeCC--eee-------------C---CCCcEEe----eCCeEEECCCCCCCCe
Q psy15206         83 LSVAKEGQSVQLECHAEGH-PIPTISWRREN--NAI-------------L---PNGQTIF----TGSTLQIPRITKEDRG  139 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~--~~~-------------~---~~~~~~~----~~~~l~i~~~~~~~~g  139 (232)
                      ...+.+|+.+.|.|.+.+. +.+.+.|++..  ...             .   ...++..    ...+|.|.+++.+|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA   88 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence            5678899999999999988 88899999832  100             0   0012221    1246999999999999


Q ss_pred             EEEEEeEeCCC----CceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeec-CCCC-eEEEeeCCEEecC--
Q psy15206        140 AYYCVAQNGIG----RGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHP-ILYWAKDGEIVVN--  207 (232)
Q Consensus       140 ~y~C~~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~g~~~~~--  207 (232)
                      .|.|.+.+..+    ........+.|.    .+|.+...+.......|+.++|.|.+.| .|.+ .+.|+|+|..+..  
T Consensus        89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~  168 (218)
T 3s96_B           89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGV  168 (218)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC----
T ss_pred             EEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCce
Confidence            99999988654    112334567776    5677766555555567899999999988 5666 8999999987754  


Q ss_pred             --------CCeEE----EEEeccccCCceEEEEecC
Q psy15206        208 --------DEYHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       208 --------~~~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                              +..+.    +.+......|+|.|+|.|.
T Consensus       169 ~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~  204 (218)
T 3s96_B          169 DTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVT  204 (218)
T ss_dssp             ----------CEEEEEEEEEEHHHHHTCSCEEEEEE
T ss_pred             ecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEE
Confidence                    22333    4445555578999999984

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.85  E-value=2.1e-20  Score=131.45  Aligned_cols=151  Identities=18%  Similarity=0.265  Sum_probs=107.6

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee------------CCCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI------------LPNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~------------~~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      +....+.+|+.+.|.|.+.+.+.+.+.|++...  ..            ....++..    ...+|.|.+++.+|+|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3r06_A            8 PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYY   87 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEE
Confidence            455678899999999999998888999998421  10            01122222    1237999999999999999


Q ss_pred             EEeEeCCCCceeeEEEEEE---EeccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecCC---------
Q psy15206        143 CVAQNGIGRGARRKIEVKV---EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVND---------  208 (232)
Q Consensus       143 C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~---------  208 (232)
                      |.+.+..+........+.|   ..+|.+...+.......|+.+.|.|.+.|.+++  .+.|+|+|..+...         
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~  167 (213)
T 3r06_A           88 CQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQD  167 (213)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCC
T ss_pred             EecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCcee
Confidence            9998865433334456666   567777776665556678889999999886643  79999999877532         


Q ss_pred             ---CeE----EEEEeccccCCceEEEEecC
Q psy15206        209 ---EYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ---~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                         ..+    .+.+......|+|.|+|.|.
T Consensus       168 ~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~  197 (213)
T 3r06_A          168 SKDSTYSLSSTLSLTKADYERHNLYTCEVT  197 (213)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred             CCCCcEEEEEEEEeCHHHhccCCeEEEEEE
Confidence               222    33344555578999999974

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.85  E-value=4.1e-22  Score=154.67  Aligned_cols=209  Identities=17%  Similarity=0.302  Sum_probs=132.5

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCc--Ee--------------------eeeEEEE-----------e---
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNF--KR--------------------LGRLHLA-----------I---   61 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~--~~--------------------~~~~~~~-----------~---   61 (232)
                      +.++.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..                    .+|+...           +   
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (434)
T 1igy_B            6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL   85 (434)
T ss_dssp             CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred             CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence            5678899999999999999754  6789999842  11                    1122211           1   


Q ss_pred             ------eee------------cCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEEEEeCCeeeCC
Q psy15206         62 ------PYT------------SPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWRRENNAILP  117 (232)
Q Consensus        62 ------~~~------------~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~  117 (232)
                            .|.            ...|.|..    +|.+....+. ..+.+|+.+.|.|.+.|. |.+ .+.|++++.....
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~  164 (434)
T 1igy_B           86 TSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGV  164 (434)
T ss_dssp             CGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCC-CCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSE
T ss_pred             ChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCc-cccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCe
Confidence                  221            22444432    2333221221 234579999999999885 666 8999998864210


Q ss_pred             -------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE----------e--ccEEEeccceee--e
Q psy15206        118 -------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE----------F--APIVTVQSTRIG--Q  176 (232)
Q Consensus       118 -------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~----------~--~p~~~~~~~~~~--~  176 (232)
                             ........+.|.|.++..+| |.|+|.+.|..+... ....+.+.          .  .|.+...+....  +
T Consensus       165 ~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v  242 (434)
T 1igy_B          165 HTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTK-VDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTL  242 (434)
T ss_dssp             EECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCC-EEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHH
T ss_pred             EecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCcc-ceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhc
Confidence                   00111123468899999888 999999999876521 22222111          0  144444333222  7


Q ss_pred             eccCeEEEEEEeecCC----CCeEEEeeCCEEecCC----------C----eEEEEEeccccCCceEEEEecC
Q psy15206        177 ALHHDMDLDCHIEAYP----HPILYWAKDGEIVVND----------E----YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p----~~~~~W~~~g~~~~~~----------~----~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..|+.+.|.|.+.|.+    .+.|.|+|+|..+...          +    ...|.+..+...|+|.|+|.|.
T Consensus       243 ~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  315 (434)
T 1igy_B          243 LITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVN  315 (434)
T ss_dssp             STTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBC
T ss_pred             ccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEE
Confidence            7899999999999884    3479999998765321          1    1245667777789999999974

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.85  E-value=8.7e-20  Score=126.53  Aligned_cols=153  Identities=20%  Similarity=0.375  Sum_probs=116.2

Q ss_pred             cccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee---------------------------eeEEEE
Q psy15206          8 QVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL---------------------------GRLHLA   60 (232)
Q Consensus         8 ~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~---------------------------~~~~~~   60 (232)
                      .+..+|.|... +.++.+.+|++++|.|.+.+.|.+.+.|++++..+                           |.|.|.
T Consensus         3 ~~~~~P~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (197)
T 3lcy_A            3 MSGEAPGIRKE-MKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCI   81 (197)
T ss_dssp             CCCEEEEEEEC-CCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEE
T ss_pred             ccCCCCccccc-CCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEE
Confidence            35678999988 88999999999999999999888999999954332                           356665


Q ss_pred             eee------ecCceeecCCcEEecC--CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeC----CeE
Q psy15206         61 IPY------TSPEAQVDTPPVILNN--SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG----STL  128 (232)
Q Consensus        61 ~~~------~~~~l~v~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~----~~l  128 (232)
                      ...      ....|.|..+|.....  ......+..|+.+.|.|.+.+.|.+.+.|++++..+..........    ..|
T Consensus        82 ~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L  161 (197)
T 3lcy_A           82 ATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHL  161 (197)
T ss_dssp             EECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEE
T ss_pred             EECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEE
Confidence            422      1455666655555432  2344567789999999999999999999999998876555543332    579


Q ss_pred             EECCCCC-CCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        129 QIPRITK-EDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       129 ~i~~~~~-~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      .|.++.. +|.|.|+|.+.|..|. ....+.+.|.
T Consensus       162 ~i~~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~  195 (197)
T 3lcy_A          162 VMKNVQRKTHAGKYKVQLSNVFGT-VDAILDVEIQ  195 (197)
T ss_dssp             EESSCCHHHHCEEEEEEEECSSCE-EEEEEEEEEE
T ss_pred             EEccccchhhCceEEEEEEcCcCc-eEEEEEEEEe
Confidence            9999985 8999999999998887 4556666654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.85  E-value=1e-19  Score=126.18  Aligned_cols=146  Identities=18%  Similarity=0.373  Sum_probs=112.4

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEec-CCCCCeEEEEeCcEee-----------------------------------
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL-----------------------------------   54 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~-~~p~~~~~W~~~~~~~-----------------------------------   54 (232)
                      ++|.|... +.+..+.+|++++|.|.+. +.|.+.+.|++++..+                                   
T Consensus         1 e~~~~~~~-p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   79 (195)
T 2c5d_C            1 EESPFVGN-PGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD   79 (195)
T ss_dssp             -CCSEEEC-CCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTT
T ss_pred             CCCeeccC-hhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccC
Confidence            47889888 8899999999999999999 8899999999965332                                   


Q ss_pred             -eeEEEEeeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCcEEeeC
Q psy15206         55 -GRLHLAIPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTG  125 (232)
Q Consensus        55 -~~~~~~~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~  125 (232)
                       |.|.|.....       .+.|.|..+|.+.. .+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+...... ...
T Consensus        80 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-~~~  157 (195)
T 2c5d_C           80 TGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLE-EPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-GPQ  157 (195)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEECCSCEEEE-CCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-SCC
T ss_pred             CcEEEEEEEeCCCceecccEEEEEecCCeEEc-CCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-CCC
Confidence             2344433211       36778887887655 4555778889999999999999999 89999999877544322 345


Q ss_pred             CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206        126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus       126 ~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      +.|.|.++.  |.|.|+|.+.|..|...+..+.|.|
T Consensus       158 ~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          158 RSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            679999887  7899999999988764345666666

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=3e-20  Score=133.03  Aligned_cols=144  Identities=12%  Similarity=0.196  Sum_probs=107.0

Q ss_pred             EeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC--C-cEEeeCCeEEECCCCCCCCeEEEEEeEeCCC-CceeeEEEEE
Q psy15206         85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPN--G-QTIFTGSTLQIPRITKEDRGAYYCVAQNGIG-RGARRKIEVK  160 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~--~-~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-~~~~~~~~l~  160 (232)
                      .+.+|+++.|.|.+.+ +...+.|+|++..+...  . ........|.|.+++.+|+|.|+|.+.+..+ ...+..+.+.
T Consensus        17 ~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~   95 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLV   95 (242)
T ss_dssp             EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEE
T ss_pred             ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEE
Confidence            6789999999999864 44579999998765311  0 0111235799999999999999999987532 2234556777


Q ss_pred             EEe---ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec-----CCCeEEEEEeccccCCceEEEEecC
Q psy15206        161 VEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV-----NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       161 v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~-----~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |..   +|.+...+. ..+..|++++|.|.+.+. .+.+.|+|+|..+.     ......+.+.+++.+|+|.|+|.+.
T Consensus        96 V~~~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~  172 (242)
T 1p6f_A           96 VTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS  172 (242)
T ss_dssp             EECCSCCCEEEEESC-SEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEE
T ss_pred             eecccCCCceEccCC-CccCCCCcEEEEEecCCC-CCEEEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEE
Confidence            763   566666553 457899999999998765 45899999986543     3456678888899999999999873

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.85  E-value=1.8e-19  Score=124.81  Aligned_cols=147  Identities=16%  Similarity=0.226  Sum_probs=103.9

Q ss_pred             CCceEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeC---C-C--------------CcEE-eeCCeEEECCCCCCCCeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAIL---P-N--------------GQTI-FTGSTLQIPRITKEDRGA  140 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~---~-~--------------~~~~-~~~~~l~i~~~~~~~~g~  140 (232)
                      +....+.+|+++.|.|.+.+ .+.+.+.|++++..+.   . .              .+.. ..+.+|.|.+++.+|.|.
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~   84 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS   84 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEE
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCce
Confidence            45567789999999999875 4456899999875431   1 0              0111 135689999999999999


Q ss_pred             EEEEeEeCCCCceeeEEEEEEEecc---EEEeccceeeeeccC-eEEEEEEeecC-CCCeEEEeeCCEEecCCCeEEEEE
Q psy15206        141 YYCVAQNGIGRGARRKIEVKVEFAP---IVTVQSTRIGQALHH-DMDLDCHIEAY-PHPILYWAKDGEIVVNDEYHSISN  215 (232)
Q Consensus       141 y~C~~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~~~W~~~g~~~~~~~~~~~~~  215 (232)
                      |.|.+.+..+. ....+.|.|..++   .+....  .....|. .++|.|.+.|. |.+.+.|+++|..+.......+..
T Consensus        85 Y~C~~~~~~~~-~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~~l~i~~  161 (193)
T 2if7_A           85 YRAQISTKTSA-KLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSW  161 (193)
T ss_dssp             EEEEEECSSCE-EEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSSEEEEEE
T ss_pred             EEEEEEecCCC-eEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCCCeEEEEe
Confidence            99999987665 3456777776554   333222  1223455 89999999985 578999999999887766666543


Q ss_pred             eccccCCceEEEEecC
Q psy15206        216 FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       216 ~~~~~~d~g~Y~C~~~  231 (232)
                      . ....|+|.|+|.|.
T Consensus       162 ~-~~~~d~G~Y~C~a~  176 (193)
T 2if7_A          162 D-PRISSEQDYTCIAE  176 (193)
T ss_dssp             C-TTTCSCCEEEEEEE
T ss_pred             c-cCcCCCCcEEEEEE
Confidence            3 23348999999974

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.85  E-value=1.1e-21  Score=146.01  Aligned_cols=157  Identities=15%  Similarity=0.219  Sum_probs=113.3

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccC-CCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGH-PIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      .+|.+..  +....+.+|+.+.|.|.+.+. |.+.+.|++++..+....+...  ....|.|.++..+|.|.|+|.+.+.
T Consensus         6 ~~P~~~~--~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   83 (317)
T 2y25_A            6 TGPHFVE--YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD   83 (317)
T ss_dssp             SCCEEEE--EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred             CCCcEee--eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence            4555553  334778899999999999886 6789999999988765444332  2358999999999999999999987


Q ss_pred             CCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeec----------CCCCeEEEeeCCEEecCCCe--------
Q psy15206        149 IGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEA----------YPHPILYWAKDGEIVVNDEY--------  210 (232)
Q Consensus       149 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~----------~p~~~~~W~~~g~~~~~~~~--------  210 (232)
                      .+. ....+.+.+...|.+...+....+..|+.+.|.|.+.+          .|.+.+.|+++|..+....+        
T Consensus        84 ~g~-~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~  162 (317)
T 2y25_A           84 RGK-DKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE  162 (317)
T ss_dssp             SCE-EEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSS
T ss_pred             CCc-EEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCC
Confidence            765 33444444443333322333344556778888887766          78889999999987754433        


Q ss_pred             -EEEEEeccccCCceEEEEecC
Q psy15206        211 -HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       211 -~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                       ..+.+.++...|+|.|+|.|.
T Consensus       163 ~~~L~i~~~~~~d~G~Y~C~a~  184 (317)
T 2y25_A          163 QIWLQINEPTPNDKGKYVMELF  184 (317)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEE
T ss_pred             EEEEEECcCCcccCeeEEEEEE
Confidence             347778888899999999874

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.85  E-value=4e-20  Score=132.02  Aligned_cols=151  Identities=19%  Similarity=0.283  Sum_probs=106.4

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee------------CCCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI------------LPNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~------------~~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      +....+.+|+++.|.|.+.+.+.+.+.|++...  ..            ....++..    ...+|.|.+++.+|.|.|.
T Consensus        31 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  110 (237)
T 3sob_L           31 PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYY  110 (237)
T ss_dssp             CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEE
Confidence            455678899999999999888888999998431  10            01122222    2347999999999999999


Q ss_pred             EEeEeCCCCceeeEEEEEE---EeccEEEeccceeeeeccCeEEEEEEeecC-C-CCeEEEeeCCEEecC----------
Q psy15206        143 CVAQNGIGRGARRKIEVKV---EFAPIVTVQSTRIGQALHHDMDLDCHIEAY-P-HPILYWAKDGEIVVN----------  207 (232)
Q Consensus       143 C~~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~~~W~~~g~~~~~----------  207 (232)
                      |.+.+..+........+.|   ..+|.+...+.......|+.++|.|.+.+. | .+.+.|+|+|..+..          
T Consensus       111 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  190 (237)
T 3sob_L          111 CQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQD  190 (237)
T ss_dssp             EEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCC
T ss_pred             EeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccc
Confidence            9998765432233345555   456777665555455578899999999884 4 479999999987653          


Q ss_pred             --CCeE----EEEEeccccCCceEEEEecC
Q psy15206        208 --DEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       208 --~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                        ++.+    .+.+......|+|.|+|.|.
T Consensus       191 ~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~  220 (237)
T 3sob_L          191 SKDSTYSLSSTLTLSKADYEKHKVYACEVT  220 (237)
T ss_dssp             TTTCCEEEEEEEEEEHHHHTTCCEEEEEEE
T ss_pred             cCCCcEEEEEEEEEcHHHccCCCcEEEEEe
Confidence              1222    34455666688999999974

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.85  E-value=6.3e-21  Score=142.84  Aligned_cols=149  Identities=15%  Similarity=0.265  Sum_probs=112.0

Q ss_pred             CceEeecCCcEEEEeeeccC---------CCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCe-EEEEEeEeCCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGH---------PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRG-AYYCVAQNGIGR  151 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~---------~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~~~  151 (232)
                      ....+.+|+.+.|.|.+.+.         +.+.+.|++++..+....+. ...+.|.|.++..+|+| .|+|.+.+..|.
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~  115 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-VKNGDLWIANYTSNDSHRRYLCTVTTKNGD  115 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-EETTEEEESSCCGGGGGCCEEEEEECTTSC
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-eecceEEEcCCChHhCCCcEEEEEEeCCCc
Confidence            34567899999999998774         45689999998765432222 45789999999999999 999999998765


Q ss_pred             ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCC-CCeEEEeeCCEEecC-CCe-----EEEEEeccccCCce
Q psy15206        152 GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP-HPILYWAKDGEIVVN-DEY-----HSISNFGTSEGTTG  224 (232)
Q Consensus       152 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~g~~~~~-~~~-----~~~~~~~~~~~d~g  224 (232)
                      .....+.+.+..+|.+........+..|+.+.|.|.+.|.| .+.+.|+|+|..+.. ..+     ..|.+.+++..|+|
T Consensus       116 ~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G  195 (329)
T 3oq3_B          116 CVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSG  195 (329)
T ss_dssp             EEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCE
T ss_pred             eeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhCE
Confidence            33333333444455544333344466799999999999999 899999999988752 222     35677788889999


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      .|+|.|.
T Consensus       196 ~Y~C~a~  202 (329)
T 3oq3_B          196 RYDCYVH  202 (329)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999985

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.85  E-value=2e-19  Score=122.59  Aligned_cols=147  Identities=19%  Similarity=0.319  Sum_probs=110.5

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCe-EEEEeCcEee-----------------eeEEEEeeee----cC
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPT-ISWRRNFKRL-----------------GRLHLAIPYT----SP   66 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~-~~W~~~~~~~-----------------~~~~~~~~~~----~~   66 (232)
                      ...+|.|... +....+.+|++++|.|.+.+.|.+. +.|++++..+                 |.|.|.....    .+
T Consensus         4 ~~~~p~i~~~-p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~s~~~   82 (175)
T 1fnl_A            4 DLPKAVVFLE-PQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLSDPV   82 (175)
T ss_dssp             CCCCCEEEEE-SCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSCSEEEESSCCGGGCEEEEEECSSSCCCCCE
T ss_pred             CCCCCEEEEc-CCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCCceEEEEeCCCcccCEEEEEEeeCCcccccE
Confidence            3458888888 7778899999999999999877655 8999965432                 5777766322    45


Q ss_pred             ceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEe
Q psy15206         67 EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        67 ~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      .|.|..++.....  ....+.+|+.+.|.|.+.+.+++ .+.|++++..+.    .......|.|.++..+|.|.|+|.+
T Consensus        83 ~l~V~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a  156 (175)
T 1fnl_A           83 QLEVHIGWLLLQA--PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK----YFHHNSDFHIPKATLKDSGSYFCRG  156 (175)
T ss_dssp             EEEEECSSEEEEC--SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE----EEEECCCEEESSCCGGGCEEEEEEE
T ss_pred             EEEEeCCCceeeC--CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEcc----CCCCCCEEEEcccChhhCeEEEEEE
Confidence            6666655554432  33567789999999999876654 899999998762    2334678999999999999999999


Q ss_pred             EeCCCCceeeEEEEEEE
Q psy15206        146 QNGIGRGARRKIEVKVE  162 (232)
Q Consensus       146 ~~~~~~~~~~~~~l~v~  162 (232)
                      .|..+...+..+.+.|.
T Consensus       157 ~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A          157 LVGSKNVSSETVNITIT  173 (175)
T ss_dssp             EETTEEEECCCEEEEEE
T ss_pred             EcCCCCccCccEEEEEe
Confidence            99765545555666654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.85  E-value=1.5e-19  Score=123.95  Aligned_cols=143  Identities=24%  Similarity=0.381  Sum_probs=105.9

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee-----------------------------eeEEEEee
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-----------------------------GRLHLAIP   62 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~-----------------------------~~~~~~~~   62 (232)
                      +|.|... +.+..+.+|++++|.|.+.+.|.+.+.|++++..+                             |.|.|...
T Consensus         2 ~~~~~~~-p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   80 (182)
T 1rhf_A            2 GLKLMGA-PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   80 (182)
T ss_dssp             -----CC-CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             CCEEEeC-CcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence            5777777 88899999999999999999899999999954322                             34555542


Q ss_pred             e-------ecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCcEEeeCCeEEECCCC
Q psy15206         63 Y-------TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTGSTLQIPRIT  134 (232)
Q Consensus        63 ~-------~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~  134 (232)
                      .       ..+.|.|..+|.+.. .+....+..|+.+.|.|.+.+.|.+ .+.|++++..+....   .....|.|.++ 
T Consensus        81 ~~~~~~~~~~~~l~V~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~---~~~~~L~i~~~-  155 (182)
T 1rhf_A           81 DGGETEISQPVWLTVEGVPFFTV-EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA---PSPSVLNVTGV-  155 (182)
T ss_dssp             SCTTCEECCCEEEEEECSCEEEE-CCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE---ESSEEEEECCC-
T ss_pred             cCCCcEEEEEEEEEEecCCeEEe-cCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCC---CCceEEEEecc-
Confidence            1       155677777777665 4555778899999999999999998 899999998764322   24567889888 


Q ss_pred             CCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206        135 KEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                       +|.|.|+|.+.|..|......+.|.|
T Consensus       156 -~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          156 -TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             -SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -ccCeEEEEEEECCCCCcccceEEEEe
Confidence             58899999999988764334555544

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.84  E-value=6.4e-20  Score=128.99  Aligned_cols=151  Identities=15%  Similarity=0.288  Sum_probs=107.8

Q ss_pred             CCceEeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCCC------------------CcEEe-------eCCeEEECC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIP---TISWRRENNAILPN------------------GQTIF-------TGSTLQIPR  132 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~~------------------~~~~~-------~~~~l~i~~  132 (232)
                      +..+.+..|+++.|.|.+.+.+.+   .+.|++++......                  .+...       .+.+|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            455778899999999999887765   38999976543210                  01111       124699999


Q ss_pred             CCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccE-EEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC---
Q psy15206        133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPI-VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND---  208 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~---  208 (232)
                      ++.+|.|.|.|.+.+..+........+.+..++. .........+..|+.+.+.|.+.|.|.|.|.|++++..+...   
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~  165 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSF  165 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceE
Confidence            9999999999999876554344444444544333 333344556667899999999999999999999998655321   


Q ss_pred             ---C----eEEEEEeccccCCceEEEEecC
Q psy15206        209 ---E----YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ---~----~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                         .    ...|.+..+...|+|.|+|.|+
T Consensus       166 ~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~  195 (218)
T 4frw_A          166 KHSRSAAVTSEFHLVPSRSMNGQPLTCVVS  195 (218)
T ss_dssp             ECSSSEEEEEEEEECCCGGGTTCEEEEEEE
T ss_pred             ecCCcEEEEEEEEEeeCCHHhCeEEEEEEE
Confidence               1    2357777888899999999984

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.84  E-value=5.9e-20  Score=136.33  Aligned_cols=147  Identities=11%  Similarity=0.154  Sum_probs=113.0

Q ss_pred             CceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcEEeeC----CeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206         82 QLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTG----STLQIPRITKEDRGAYYCVAQNGIGRGARRK  156 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  156 (232)
                      ....+.+|+.+.|.|... +.|.+.+.|++++..+....+.....    ..|.|.++..+|.|.|+|.+.+..|...  .
T Consensus         9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~--s   86 (312)
T 2y23_A            9 VVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS--S   86 (312)
T ss_dssp             CEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE--E
T ss_pred             eeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE--E
Confidence            345677899988888865 47788999999999887555544322    5899999999999999999998776433  3


Q ss_pred             EEEEEEe------------ccEEEeccc-eeeeeccCeEEEEEEee-cCCCCeEEEeeCCEEecCCCe-----------E
Q psy15206        157 IEVKVEF------------APIVTVQST-RIGQALHHDMDLDCHIE-AYPHPILYWAKDGEIVVNDEY-----------H  211 (232)
Q Consensus       157 ~~l~v~~------------~p~~~~~~~-~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~g~~~~~~~~-----------~  211 (232)
                      ..+.+..            +|.+...+. ...+..|+.+.|.|.+. +.|.+.+.|+++|..+....+           .
T Consensus        87 ~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~  166 (312)
T 2y23_A           87 YLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII  166 (312)
T ss_dssp             EEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEE
T ss_pred             EEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEE
Confidence            4444432            555444333 66788999999999998 899999999999988865443           3


Q ss_pred             EEEEeccccCCceEEEEec
Q psy15206        212 SISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       212 ~~~~~~~~~~d~g~Y~C~~  230 (232)
                      .|.+.++...|+|.|+|.+
T Consensus       167 ~L~i~~~~~~d~G~Y~C~~  185 (312)
T 2y23_A          167 EMFMEKLQDEDEGTYTFQL  185 (312)
T ss_dssp             EEEESCCCGGGCEEEEEEE
T ss_pred             EEEEccCCcccCEeEEEEE
Confidence            3777788889999999965

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=4.7e-22  Score=149.14  Aligned_cols=149  Identities=22%  Similarity=0.423  Sum_probs=50.4

Q ss_pred             CCceEeecCCcEEEEeeeccC-CCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGH-PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      +....+.+|+.+.|.|.+.+. |.+.+.|++++..+....+....++.|.|.+++.+|.|.|+|.+.+. +. ....+.+
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~-~~~~~~l   92 (334)
T 1ry7_B           15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QR-VLCHFSV   92 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-Ce-EEEEEEE
Confidence            566778899999999999876 56789999999887655555556678999999999999999999987 43 4455566


Q ss_pred             EEEeccE----------------------EEe----ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----
Q psy15206        160 KVEFAPI----------------------VTV----QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----  208 (232)
Q Consensus       160 ~v~~~p~----------------------~~~----~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----  208 (232)
                      .|...|.                      +..    ......+..|+.+.|.|.+.|.|.+.+.|+++|..+...     
T Consensus        93 ~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~  172 (334)
T 1ry7_B           93 RVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG  172 (334)
T ss_dssp             --------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTC
T ss_pred             EEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccc
Confidence            6654332                      111    112346778999999999999999999999999876533     


Q ss_pred             -----CeEEEEEeccccCCceEEEEecC
Q psy15206        209 -----EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 -----~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                           ....|.+.++...|+|.|+|.|.
T Consensus       173 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  200 (334)
T 1ry7_B          173 IKLRHQQWSLVMESVVPSDRGNYTCVVE  200 (334)
T ss_dssp             CCCCTTTTEEEECSCCGGGCCCEEEEEE
T ss_pred             eecccceEEEEECCCCcccCEEEEEEEE
Confidence                 23478888899999999999874

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.84  E-value=8.4e-20  Score=137.73  Aligned_cols=150  Identities=15%  Similarity=0.147  Sum_probs=113.8

Q ss_pred             CCceEeecCCcEEEEeeeccCCC-----------CeEEEEeCCee------eC---CCCcEEeeCCeEEECCCCCCCCeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPI-----------PTISWRRENNA------IL---PNGQTIFTGSTLQIPRITKEDRGA  140 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~-----------~~~~W~~~~~~------~~---~~~~~~~~~~~l~i~~~~~~~~g~  140 (232)
                      .....+.+|+.+.|.|.+.+.|.           +.+.|++++..      +.   ...+....++.|.|.++..+|+|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   93 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN   93 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence            45567889999999999987654           88999998842      11   122344557789999999999999


Q ss_pred             EEEEeEeCCCCceeeEEEEEEEeccEEEe----ccceeeeeccCeEEEEEEe-----ecCCCCeEEEeeCCEEecCCCe-
Q psy15206        141 YYCVAQNGIGRGARRKIEVKVEFAPIVTV----QSTRIGQALHHDMDLDCHI-----EAYPHPILYWAKDGEIVVNDEY-  210 (232)
Q Consensus       141 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~----~~~~~~~~~g~~~~l~C~~-----~~~p~~~~~W~~~g~~~~~~~~-  210 (232)
                      |+|.+.+..+. ....+.+.|..+|....    .+....+..|+.+.|.|.+     .|.|.+.+.|+|+|..+....+ 
T Consensus        94 Y~C~a~n~~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~  172 (349)
T 4dep_C           94 YTCMLRNTTYC-SKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNV  172 (349)
T ss_dssp             EEEEEECSSCE-EEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSE
T ss_pred             EEEEEecCCce-EEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccce
Confidence            99999997665 44566777776543221    1334466789999999985     7789999999999998865322 


Q ss_pred             ----EEEEEeccccCCceEEEEecC
Q psy15206        211 ----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       211 ----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                          ..|.+.++...|+|.|+|.|.
T Consensus       173 ~~~~~~L~i~~v~~~d~G~Y~C~a~  197 (349)
T 4dep_C          173 IPEGMNLSFLIALISNNGNYTCVVT  197 (349)
T ss_dssp             EEETTEEEEESCCGGGCEEEEEEEE
T ss_pred             eecCCEEEEeeeeecCCcEEEEEEE
Confidence                357778888999999999874

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.84  E-value=2.2e-19  Score=125.36  Aligned_cols=149  Identities=19%  Similarity=0.340  Sum_probs=111.6

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCe-EEEEeCcEee-----------------eeEEEEeee----ecCc
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPT-ISWRRNFKRL-----------------GRLHLAIPY----TSPE   67 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~-~~W~~~~~~~-----------------~~~~~~~~~----~~~~   67 (232)
                      ..+|.|... +....+.+|++++|.|.+.+.|.+. +.|++++..+                 |.|.|....    ..+.
T Consensus         5 ~p~p~i~~~-p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~s~~~~   83 (204)
T 3sgj_C            5 LPKAVVFLE-PQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDAATVDDSGEYRCQTQLSTLSDPVQ   83 (204)
T ss_dssp             -CBCEEEEE-SCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCSSEEEESSCCGGGCEEEEEEETTSBCCCCEE
T ss_pred             CCCCeEEEc-CCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCccEEEEecccccCCEEEEEEeCCCcccccEE
Confidence            457888888 7778899999999999999877654 9999965433                 577777632    2566


Q ss_pred             eeecCCcEEecCCCCceEeecCCcEEEEeeeccC-CCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeE
Q psy15206         68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH-PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        68 l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      |.|..++..... +. ..+.+|+.+.|.|.+.+. +.+.+.|++++..+.    .....+.|.|.++..+|.|.|+|.+.
T Consensus        84 l~V~~~p~~~~~-~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~  157 (204)
T 3sgj_C           84 LEVHIGWLLLQA-PR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK----YFHHNSDFYIPKATLKDSGSYFCRGL  157 (204)
T ss_dssp             EEEECSSEEEEC-SC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEE----EEEECCCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEecCceEecC-Cc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEee----cccCCceEEECcCCcccCEEEEEEEE
Confidence            777767665542 22 567789999999999665 557899999998752    23346789999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEecc
Q psy15206        147 NGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p  165 (232)
                      |..+...+..+.+.|..+|
T Consensus       158 n~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          158 VGSKNVSSETVQITITQGL  176 (204)
T ss_dssp             ETTEEEECCCEEEEEEC--
T ss_pred             eCCCceecCcEEEEEeCcC
Confidence            9654445667777777544

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.84  E-value=5.9e-20  Score=132.33  Aligned_cols=152  Identities=15%  Similarity=0.225  Sum_probs=105.9

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCee-----e---------CCCCcEEee----CCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA-----I---------LPNGQTIFT----GSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~-----~---------~~~~~~~~~----~~~l~i~~~~~~~~g~y  141 (232)
                      .+....+.+|+.+.|.|.+.+.+.+.+.|++....     +         ....++...    ..+|.|.++..+|+|.|
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   89 (250)
T 3esu_F           10 STSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTY   89 (250)
T ss_dssp             SCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEE
Confidence            45556788999999999999988889999985310     0         011222111    12799999999999999


Q ss_pred             EEEeEeCCCCceeeEEEEEEEec-------------------cEEEeccceeeeeccCeEEEEEEeecCC--CCeEEEee
Q psy15206        142 YCVAQNGIGRGARRKIEVKVEFA-------------------PIVTVQSTRIGQALHHDMDLDCHIEAYP--HPILYWAK  200 (232)
Q Consensus       142 ~C~~~~~~~~~~~~~~~l~v~~~-------------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~  200 (232)
                      .|.+.+..+........+.|..+                   +.+...+....+..|++++|.|.+.+.+  .+.+.|+|
T Consensus        90 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k  169 (250)
T 3esu_F           90 FCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVK  169 (250)
T ss_dssp             EEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEE
T ss_pred             EEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEE
Confidence            99998865432333345555442                   2233445566788999999999998877  67899999


Q ss_pred             C--CEEe----------------------------cCCCeEEEEEeccccCCceEEEEecC
Q psy15206        201 D--GEIV----------------------------VNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       201 ~--g~~~----------------------------~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +  |..+                            .....+.|.+.++..+|+|.|.|.+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  230 (250)
T 3esu_F          170 QRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARS  230 (250)
T ss_dssp             ECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEe
Confidence            7  3221                            01234468888899999999999985

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.84  E-value=1.4e-19  Score=127.55  Aligned_cols=145  Identities=26%  Similarity=0.457  Sum_probs=108.8

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe-------------------------------eeeE
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR-------------------------------LGRL   57 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~-------------------------------~~~~   57 (232)
                      ...+|.|+.. +.++.+.+|++++|.|.+.+.|.+.+.|++++..                               .|.|
T Consensus         6 ~~~~P~i~~~-p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y   84 (217)
T 2vr9_A            6 QYQSPRIIEH-PTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY   84 (217)
T ss_dssp             CCCCCEEEEC-CCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEE
T ss_pred             ccCCCEEecC-CCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceE
Confidence            3568999988 8889999999999999999989999999994332                               2467


Q ss_pred             EEEeeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCC--------CCcE
Q psy15206         58 HLAIPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILP--------NGQT  121 (232)
Q Consensus        58 ~~~~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~--------~~~~  121 (232)
                      .|.....       ...|.+...+......+....+..|+.+.|.|.+ .+.|.+.+.|++++..+..        ..+.
T Consensus        85 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~  164 (217)
T 2vr9_A           85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV  164 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSE
T ss_pred             EEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcE
Confidence            7765321       3344444322222224555678889999999998 8889999999999988752        1222


Q ss_pred             -EeeCCeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206        122 -IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR  154 (232)
Q Consensus       122 -~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  154 (232)
                       ....+.|.|.++..+|.|.|+|.+.|..|....
T Consensus       165 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  198 (217)
T 2vr9_A          165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRES  198 (217)
T ss_dssp             EEETTTEEEESSCCSTTCEEEEEEEEETTEEEEC
T ss_pred             EecCCCcEEEeeCCHHHCeEEEEEEEcccceecc
Confidence             234568999999999999999999998876433

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.84  E-value=1e-19  Score=130.25  Aligned_cols=151  Identities=15%  Similarity=0.190  Sum_probs=107.3

Q ss_pred             CCceEeecCCcEEEEeeeccCC----CCeEEEEeCC--eee---C---------CCCcEEee----CCeEEECCCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP----IPTISWRREN--NAI---L---------PNGQTIFT----GSTLQIPRITKEDR  138 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~~--~~~---~---------~~~~~~~~----~~~l~i~~~~~~~~  138 (232)
                      +....+.+|+.+.|.|.+.+.+    .+.+.|+++.  ..+   .         ...++...    ..+|.|.+++.+|+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   87 (240)
T 1moe_A            8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (240)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhC
Confidence            4556788999999999998887    6789999863  211   0         01222221    12799999999999


Q ss_pred             eEEEEEeEeCCCCceeeEEEEEEEecc------EEEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeC--CEEe---
Q psy15206        139 GAYYCVAQNGIGRGARRKIEVKVEFAP------IVTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKD--GEIV---  205 (232)
Q Consensus       139 g~y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~--g~~~---  205 (232)
                      |.|.|.+.+..+........+.|..++      .+...+....+..|++++|.|.+.+.|.  +.+.|+|+  |..+   
T Consensus        88 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~  167 (240)
T 1moe_A           88 ATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWI  167 (240)
T ss_dssp             EEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEE
T ss_pred             EEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCCCcEEE
Confidence            999999998754323344566666532      2344466667889999999999999874  58999995  2111   


Q ss_pred             ---c----------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        206 ---V----------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       206 ---~----------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                         .                      ......|.+.++..+|+|.|+|.|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  218 (240)
T 1moe_A          168 GRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPF  218 (240)
T ss_dssp             EEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             EEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEE
Confidence               0                      1223568888899999999999985

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.84  E-value=9.7e-19  Score=120.73  Aligned_cols=147  Identities=24%  Similarity=0.435  Sum_probs=109.3

Q ss_pred             CCCeeecCCCcceEeec-CCeEEEEEEecCCCC--CeEEEEeCcEee----------------------eeEEEEeee--
Q psy15206         11 TPPVILNNSTQLSVAKE-GQSVQLECHAEGHPI--PTISWRRNFKRL----------------------GRLHLAIPY--   63 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~-G~~v~l~C~~~~~p~--~~~~W~~~~~~~----------------------~~~~~~~~~--   63 (232)
                      .||.|...  ....+.+ |++++|.|.+.+.+.  +.+.|++++..+                      |.|.|....  
T Consensus         2 ~~P~i~~~--~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   79 (190)
T 2wv3_A            2 NEPRIVTS--EEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVS   79 (190)
T ss_dssp             -CCEEEEC--CCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCccccc--ceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeCC
Confidence            58888865  4556666 999999999998776  889999954332                      577777633  


Q ss_pred             ---ecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEe--CCeeeC---CCCcEEeeC----CeEEEC
Q psy15206         64 ---TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRR--ENNAIL---PNGQTIFTG----STLQIP  131 (232)
Q Consensus        64 ---~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~--~~~~~~---~~~~~~~~~----~~l~i~  131 (232)
                         ..+.|.|..+|.+.. .+....+..|+.+.|.|.+.|.|.+.+.|++  ++..+.   ...++....    +.|.|.
T Consensus        80 ~~~~~~~l~V~~~p~~~~-~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~  158 (190)
T 2wv3_A           80 APKANATIEVKAAPDITG-HKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIV  158 (190)
T ss_dssp             EEEEEEEEEEECCCEEEE-ECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEEC
T ss_pred             cccccEEEEEecCCcccc-cCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEE
Confidence               256677877777654 3556678899999999999999999999999  666542   222332221    379999


Q ss_pred             CCC-CCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206        132 RIT-KEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus       132 ~~~-~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      ++. .+|.|.|+|.+.|..|. ....+.|.|
T Consensus       159 ~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V  188 (190)
T 2wv3_A          159 NLQITEDPGEYECNATNSIGS-ASVSTVLRV  188 (190)
T ss_dssp             SCCTTTSCEEEEEEEECSSCE-EEEEEEEEE
T ss_pred             eccccCCCEEEEEEEEecCCc-ceeEEEEEE
Confidence            999 79999999999998876 445555555

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.84  E-value=8.4e-20  Score=131.28  Aligned_cols=150  Identities=17%  Similarity=0.273  Sum_probs=107.1

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eee-----------------CCCCcEEee------CCeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAI-----------------LPNGQTIFT------GSTLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~-----------------~~~~~~~~~------~~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..+                 ....++...      ..+|.|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   89 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCC
Confidence            346778999999999998876  5679999842  111                 011233221      1369999999


Q ss_pred             CCCCeEEEEEeEeCCCC-ceeeEEEEEEEec---------------cEEEeccceeeeeccCeEEEEEEeecCCCCeEEE
Q psy15206        135 KEDRGAYYCVAQNGIGR-GARRKIEVKVEFA---------------PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYW  198 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W  198 (232)
                      .+|+|.|.|.+.+..+. .......|.|..+               +.+...+....+..|++++|.|.+.+.|.+.+.|
T Consensus        90 ~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W  169 (247)
T 2ghw_B           90 AEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLAW  169 (247)
T ss_dssp             GGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEE
T ss_pred             HHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEEE
Confidence            99999999999986221 1122345566533               3355556667788999999999999999889999


Q ss_pred             ee--CCEEec---------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        199 AK--DGEIVV---------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       199 ~~--~g~~~~---------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|  +|..+.                     ....+.|.+.++..+|+|.|+|.|.
T Consensus       170 ~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  225 (247)
T 2ghw_B          170 YQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQR  225 (247)
T ss_dssp             EEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEEC
T ss_pred             EEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEc
Confidence            99  543220                     1234568888999999999999985

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.84  E-value=6e-20  Score=125.62  Aligned_cols=140  Identities=17%  Similarity=0.328  Sum_probs=100.3

Q ss_pred             CceEeecCCcEEEEeeecc--CCCCeEEEEe--CCeeeC----------CCCcE-EeeCCeEEECCCCCCCCeEEEEEeE
Q psy15206         82 QLSVAKEGQSVQLECHAEG--HPIPTISWRR--ENNAIL----------PNGQT-IFTGSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~--~~~~~~~W~~--~~~~~~----------~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      ..+....|+++.|.|....  .+.+.+.|++  ++..+.          ...+. ...+++|.|.+++.+|+|.|.|.+.
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~   86 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY   86 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEE
Confidence            4456778999999996532  4456899999  876651          22333 3346789999999999999999999


Q ss_pred             eCCCCce-eeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCC
Q psy15206        147 NGIGRGA-RRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGT  222 (232)
Q Consensus       147 ~~~~~~~-~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d  222 (232)
                      +..+... ...+.|.|..   .|.+..        .+..+.|.|.+.+.|.+.+.|+++|..+ ......+.+.. ...|
T Consensus        87 n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~~~~~i~~~~-~~~d  156 (182)
T 1hnf_A           87 DTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL-KLSQRVITHKW-TTSL  156 (182)
T ss_dssp             ETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE-EEESSCEEEEC-CSCE
T ss_pred             eCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC-CCCCcEEEEec-ccCC
Confidence            9776532 3456677764   233332        2336899999999999999999999887 32333344332 4689


Q ss_pred             ceEEEEecC
Q psy15206        223 TGSLQCKVP  231 (232)
Q Consensus       223 ~g~Y~C~~~  231 (232)
                      +|.|+|.|.
T Consensus       157 ~G~Y~C~a~  165 (182)
T 1hnf_A          157 SAKFKCTAG  165 (182)
T ss_dssp             EEEEEEEEE
T ss_pred             CcEEEEEEE
Confidence            999999974

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.84  E-value=2.3e-19  Score=126.86  Aligned_cols=149  Identities=20%  Similarity=0.392  Sum_probs=101.4

Q ss_pred             CCceEeecCCcEEEEeeeccCCC-----CeEEEEeCCeeeC---------C------CCcEEee-------CCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPI-----PTISWRRENNAIL---------P------NGQTIFT-------GSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~-----~~~~W~~~~~~~~---------~------~~~~~~~-------~~~l~i~~~  133 (232)
                      .....+..|+.+.|.|.+.+.+.     ..+.|++++..+.         .      ..+....       +.+|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            34456778999999999876553     3799999753221         0      1122211       137999999


Q ss_pred             CCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeC-CEEecCC----
Q psy15206        134 TKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD-GEIVVND----  208 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~-g~~~~~~----  208 (232)
                      +.+|.|.|+|.+.+ .+. ....+.|.|..++.............|+.+.|.|.+.|.|.|.+.|+++ |..+...    
T Consensus        88 ~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~  165 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTT  165 (222)
T ss_dssp             CGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEE
T ss_pred             ccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceE
Confidence            99999999999998 333 5566778887665432222222556799999999999999999999998 5444321    


Q ss_pred             ------CeEE-EEEeccccCCceEEEEecC
Q psy15206        209 ------EYHS-ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ------~~~~-~~~~~~~~~d~g~Y~C~~~  231 (232)
                            ..+. .........|.|.|+|.|.
T Consensus       166 ~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~  195 (222)
T 3sbw_C          166 NSKREEKLFNVTSTLRINTTTNEIFYCTFR  195 (222)
T ss_dssp             ECC----CEEEEEEEEEECCTTCEEEEEEE
T ss_pred             EEcCCCCCEEEEEEEEEeccCCcEEEEEEE
Confidence                  1122 2222345689999999974

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.84  E-value=1.7e-20  Score=136.89  Aligned_cols=212  Identities=13%  Similarity=0.106  Sum_probs=92.2

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEe----CcE----------------eeeeEEEEeeee------cCceeecCC
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRR----NFK----------------RLGRLHLAIPYT------SPEAQVDTP   73 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~----~~~----------------~~~~~~~~~~~~------~~~l~v~~~   73 (232)
                      |.+..|.+|++++|.|.+....+..+.|.-    ...                ..+.|.|.....      .+.|.|..+
T Consensus         6 P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~~~y~C~~~~~~~~~~~~v~l~V~~~   85 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWT   85 (291)
T ss_dssp             CSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCSCCCCEEEEECSSCEEEEECEEEECBC
T ss_pred             CCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCCCceEEEEEEecccCCeEEEEEEcCCccEEEEEEEEEecC
Confidence            677889999999999999754444578852    111                113566665332      567788777


Q ss_pred             cEEecCCCCceEeecCCcEEEEeeeccC-CCC--eEEEEeCCeeeCCCCc-EEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         74 PVILNNSPQLSVAKEGQSVQLECHAEGH-PIP--TISWRRENNAILPNGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        74 p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~--~~~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      |......+....+.+|+.++|.|.+.+. |..  .+.|++++..+..... .......+.+.....++.+.|+|.+.+..
T Consensus        86 P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l  165 (291)
T 1mq8_A           86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDL  165 (291)
T ss_dssp             CSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEEC
T ss_pred             CCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeeccCCceEEEEEEecC
Confidence            7655444443457789999999999874 433  5899999877632110 00012356666666667779999999864


Q ss_pred             CC-------ceeeEEEEEEEeccEEEec-cceeeeeccCeEEEEEEeecCCCC---eEEEeeCCEEecC-----CCeEEE
Q psy15206        150 GR-------GARRKIEVKVEFAPIVTVQ-STRIGQALHHDMDLDCHIEAYPHP---ILYWAKDGEIVVN-----DEYHSI  213 (232)
Q Consensus       150 ~~-------~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~g~~~~~-----~~~~~~  213 (232)
                      +.       ..++...+.|.++|..... .....+.+|+.++|.|.+.|.+++   .++|+++|..+..     ++...+
T Consensus       166 ~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~~~g~~~~~  245 (291)
T 1mq8_A          166 RPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA  245 (291)
T ss_dssp             GGGTSCEEEECCCCEECBC-------------------------------------------------------------
T ss_pred             CccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCceeeecCCeEEE
Confidence            42       1245567778777532111 112256789999999999997654   5999999987753     223332


Q ss_pred             EEec-ccc--CCceEEEEecC
Q psy15206        214 SNFG-TSE--GTTGSLQCKVP  231 (232)
Q Consensus       214 ~~~~-~~~--~d~g~Y~C~~~  231 (232)
                      .... ++.  ++.+.|.|.++
T Consensus       246 ~~~~~~~~~~~~~~~~~C~~~  266 (291)
T 1mq8_A          246 KASVSVTAEDEGTQRLTCAVI  266 (291)
T ss_dssp             ---------------------
T ss_pred             EEecceeEcCCCCEEEEEEEE
Confidence            2221 122  44667778775

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.84  E-value=1.2e-19  Score=135.77  Aligned_cols=152  Identities=21%  Similarity=0.333  Sum_probs=107.1

Q ss_pred             CCCceEeecCCcEEEEeeeccC-CCCeEEEEeCCeeeC---------CCCcEE---------eeCCeEEECCCCCCCCeE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH-PIPTISWRRENNAIL---------PNGQTI---------FTGSTLQIPRITKEDRGA  140 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~---------~~~~~~---------~~~~~l~i~~~~~~~~g~  140 (232)
                      .+....+.+|+.+.|.|.+.+. |.+.+.|++++....         ...+..         .....|.|.+++.+|.|.
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   88 (327)
T 2wng_A            9 PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGT   88 (327)
T ss_dssp             CCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEE
T ss_pred             CCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeE
Confidence            4667788899999999999886 778999999875321         001222         234579999999999999


Q ss_pred             EEEEeEeCCCCce----eeEEEEEEEeccEE-EeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecCC-----
Q psy15206        141 YYCVAQNGIGRGA----RRKIEVKVEFAPIV-TVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVND-----  208 (232)
Q Consensus       141 y~C~~~~~~~~~~----~~~~~l~v~~~p~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~-----  208 (232)
                      |+|.+.+..+...    .....+.|..+|.. .+......+..|+.+.|.|.+.|.|++  .+.|+++|..+...     
T Consensus        89 Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~  168 (327)
T 2wng_A           89 YYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVD  168 (327)
T ss_dssp             EEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEE
T ss_pred             EEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccc
Confidence            9999998755311    13456777654431 111223567789999999999998876  89999999877532     


Q ss_pred             -----CeEE----EEEeccccCCceEEEEecC
Q psy15206        209 -----EYHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 -----~~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                           ..+.    +.+......|.|.|+|.|.
T Consensus       169 ~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~  200 (327)
T 2wng_A          169 PVGESVSYSIHSTAKVVLTREDVHSQVICEVA  200 (327)
T ss_dssp             CSSCCSCEEEEEEEEEECCTTGGGCEEEEEEE
T ss_pred             cccCCCceEEEEEEEEechhcCcCceEEEEEe
Confidence                 2232    3334445566799999874

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.84  E-value=5.3e-20  Score=129.19  Aligned_cols=147  Identities=19%  Similarity=0.252  Sum_probs=107.0

Q ss_pred             ceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeC------------CCCcEEe----eCCeEEECCCCCCCCeEEEEE
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAIL------------PNGQTIF----TGSTLQIPRITKEDRGAYYCV  144 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~C~  144 (232)
                      ...+.+|+.+.|.|.+.  +.+.+.|+++  +..+.            ...++..    ...+|.|.+++.+|.|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            56778999999999997  7788999984  22210            1122221    124799999999999999999


Q ss_pred             eEeCCC-CceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecCC--CCeEEEeeCCEEecC----------
Q psy15206        145 AQNGIG-RGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYP--HPILYWAKDGEIVVN----------  207 (232)
Q Consensus       145 ~~~~~~-~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~g~~~~~----------  207 (232)
                      +.+..+ ........+.|.    .+|.+...+.......|+.+.|.|.+.|.+  .+.+.|+|+|..+..          
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~  166 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQ  166 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEC
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceEC
Confidence            999766 224445677776    677777766555555799999999998863  468999999988743          


Q ss_pred             -CCeE----EEEEeccccCCceEEEEecC
Q psy15206        208 -DEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       208 -~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                       +..+    .+.+......|+|.|+|.|.
T Consensus       167 ~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~  195 (211)
T 3tv3_L          167 SNNKYAASSYLSLTPEQWKSHRSYSCQVT  195 (211)
T ss_dssp             TTSSEEEEEEEEECHHHHHHSSCEEEEEE
T ss_pred             CCCCEEEEEEEEEcHHHhCCCCeEEEEEE
Confidence             2222    35555666678999999974

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.84  E-value=5.4e-20  Score=125.55  Aligned_cols=151  Identities=21%  Similarity=0.280  Sum_probs=109.8

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCC-eEEEEeCcEee-----------------eeEEEEeeee----cC
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIP-TISWRRNFKRL-----------------GRLHLAIPYT----SP   66 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~-~~~W~~~~~~~-----------------~~~~~~~~~~----~~   66 (232)
                      |..+|.|... +....+.+|++++|.|.+.+.+.+ .+.|++++..+                 |.|.|.....    .+
T Consensus         1 v~~~P~i~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~~   79 (176)
T 1f2q_A            1 VPQKPKVSLN-PPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPV   79 (176)
T ss_dssp             ---CCCCEEE-SSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCSSEEEECSCCGGGCEEEEEECTTSSCCCCE
T ss_pred             CCCCCEEEcC-CCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCceEEEEeccceecCEEEEEEcCCccccccE
Confidence            3568899888 777889999999999999987764 79999965432                 5777766322    45


Q ss_pred             ceeecCCcEEecCCCCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEe
Q psy15206         67 EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        67 ~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      .|.|..++.....  ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+...    ...+.|.|.++..+|.|.|+|.+
T Consensus        80 ~l~V~~~~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a  153 (176)
T 1f2q_A           80 YLEVFSDWLLLQA--SAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW----YENHNISITNATVEDSGTYYCTG  153 (176)
T ss_dssp             EEEEECSSEEEEE--SCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC----CCSSEEEESSCCGGGCEEEEEEE
T ss_pred             EEEEeCcceeecC--CcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeee----cCCCeEEECCCCcccCEEEEEEE
Confidence            5666655544432  234677999999999995 5666789999999876322    23568999999999999999999


Q ss_pred             EeCCCCceeeEEEEEEEeccE
Q psy15206        146 QNGIGRGARRKIEVKVEFAPI  166 (232)
Q Consensus       146 ~~~~~~~~~~~~~l~v~~~p~  166 (232)
                      .|..+...+..+.+.|..+|.
T Consensus       154 ~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          154 KVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             EETTEEEECCCEEEEEECSCC
T ss_pred             EeCCcceEecCEEEEEecCCC
Confidence            997554455667888877664

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.84  E-value=3.3e-21  Score=135.48  Aligned_cols=151  Identities=21%  Similarity=0.357  Sum_probs=105.8

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eeeC------------CCCcEEee----CCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAIL------------PNGQTIFT----GSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~  142 (232)
                      +....+.+|+.+.|.|.+.+.+.+.+.|+++.  ..+.            ...++...    ...|.|.+++.+|+|.|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            55567889999999999888777789999853  2220            01233221    237999999999999999


Q ss_pred             EEeEeCCCCc--eeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecC-CC-CeEEEeeCCEEecCCCe----
Q psy15206        143 CVAQNGIGRG--ARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAY-PH-PILYWAKDGEIVVNDEY----  210 (232)
Q Consensus       143 C~~~~~~~~~--~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~g~~~~~~~~----  210 (232)
                      |.+.+.....  ......+.|.    .+|.+...+.......|+.+.|.|.+.|. |. +.+.|+|+|..+.....    
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~  165 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP  165 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCc
Confidence            9999732211  1223345553    46677665544445679999999999887 54 68999999988753311    


Q ss_pred             ------EE----EEEeccccCCceEEEEecC
Q psy15206        211 ------HS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       211 ------~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                            +.    |.+..+..+|+|.|+|.|.
T Consensus       166 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  196 (212)
T 1nfd_E          166 SKQGQNYMTSSYLSLTADQWKSHNRVSCQVT  196 (212)
T ss_dssp             BCSSSCEEEEEBCCEEHHHHHTCSCEEEEEE
T ss_pred             eecCCCceEEEEEEEchhhcCCCCeEEEEEE
Confidence                  22    5566777789999999984

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.84  E-value=9.9e-20  Score=128.28  Aligned_cols=151  Identities=18%  Similarity=0.256  Sum_probs=103.4

Q ss_pred             CCceEeecCCcEEEEeeecc-CC-CCeEEEEeCCe--ee------------CCCCcEEee----CCeEEECCCCCCCCeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEG-HP-IPTISWRRENN--AI------------LPNGQTIFT----GSTLQIPRITKEDRGA  140 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~-~~-~~~~~W~~~~~--~~------------~~~~~~~~~----~~~l~i~~~~~~~~g~  140 (232)
                      +....+.+|+.+.|.|.+.+ .+ .+.+.|++++.  .+            ....++...    ..+|.|.+++.+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            45567889999999999543 32 56899998542  11            001233221    2379999999999999


Q ss_pred             EEEEeEeCCC-CceeeEEEEEEE---eccEEEeccceeeeeccCeEEEEEEeec-CCCC-eEEEeeCCEEecCC------
Q psy15206        141 YYCVAQNGIG-RGARRKIEVKVE---FAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHP-ILYWAKDGEIVVND------  208 (232)
Q Consensus       141 y~C~~~~~~~-~~~~~~~~l~v~---~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~g~~~~~~------  208 (232)
                      |.|.+.+..+ ........+.|.   .+|.+...+.......|+.+.|.|.+.| .|.+ .|.|+|+|..+...      
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~  166 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT  166 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence            9999998765 112223455554   4677666443333346889999999988 4554 89999999876433      


Q ss_pred             ------CeE----EEEEeccccCCceEEEEecC
Q psy15206        209 ------EYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ------~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                            +.+    .|.+......|+|.|+|.|.
T Consensus       167 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~  199 (216)
T 2xzc_L          167 EQDSKDSTYSLSSTLTLSKADYEKHKVYACEVT  199 (216)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEE
T ss_pred             cccCCCCCEEEEEEEEECHHHhCCCCcEEEEEE
Confidence                  122    46666777799999999984

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.84  E-value=5.2e-19  Score=124.83  Aligned_cols=148  Identities=23%  Similarity=0.381  Sum_probs=113.9

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee------------------eeEEEEeeee-------
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL------------------GRLHLAIPYT-------   64 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~------------------~~~~~~~~~~-------   64 (232)
                      ...|+|+.. +.++.+.+|++++|.|.+.+.|.+.+.|++++..+                  |.|.|.....       
T Consensus        16 ~~~~~i~~~-p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~   94 (218)
T 3k0w_A           16 PRGSKITVN-PESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQ   94 (218)
T ss_dssp             ---CCEEEC-CCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEECC
T ss_pred             CCCCEEEEC-CCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCceee
Confidence            457888888 88999999999999999999999999999954432                  5788876332       


Q ss_pred             cCceeecCC---------------cEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEE
Q psy15206         65 SPEAQVDTP---------------PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQ  129 (232)
Q Consensus        65 ~~~l~v~~~---------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~  129 (232)
                      .+.|.|...               |.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+....     ...|.
T Consensus        95 ~~~l~V~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~-----~~~L~  168 (218)
T 3k0w_A           95 WSQLDVCDIPESFQRSVDGVSESKLQICV-EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYM  168 (218)
T ss_dssp             CEEEEEECCCGGGCTTCCSBCCSSCEEEE-CCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC-----SSEEE
T ss_pred             EEEEEEEccCcccccccccccCCCceEEE-CCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC-----CCEEE
Confidence            345555443               33332 4556678889999999999999999999999998875432     35799


Q ss_pred             ECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEec
Q psy15206        130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFA  164 (232)
Q Consensus       130 i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~  164 (232)
                      |.++...|.|.|+|.+.|..|...+..+.+.|...
T Consensus       169 i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          169 VPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             ESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC-
T ss_pred             EeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCC
Confidence            99999999999999999987765666677777653

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.84  E-value=2.7e-19  Score=127.91  Aligned_cols=150  Identities=15%  Similarity=0.206  Sum_probs=106.0

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee---------------CCCCcEEee-----CCeEEECCCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI---------------LPNGQTIFT-----GSTLQIPRITKEDR  138 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~---------------~~~~~~~~~-----~~~l~i~~~~~~~~  138 (232)
                      +....+.+|+++.|.|. .+.+.+.+.|+++.  ..+               ....++...     ..+|.|.+++.+|+
T Consensus         7 p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~Ds   85 (238)
T 2p1y_A            7 PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQT   85 (238)
T ss_dssp             CSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGC
T ss_pred             ccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccC
Confidence            55667889999999999 67788899999852  110               011222221     34799999999999


Q ss_pred             eEEEEEeEeCCCC----ceeeEEEEEEEecc------------EEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCC
Q psy15206        139 GAYYCVAQNGIGR----GARRKIEVKVEFAP------------IVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG  202 (232)
Q Consensus       139 g~y~C~~~~~~~~----~~~~~~~l~v~~~p------------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g  202 (232)
                      |.|.|.+.+..+.    .......+.|...+            .+...+....+..|++++|.|.+.+.|.+.+.|+|++
T Consensus        86 G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~  165 (238)
T 2p1y_A           86 SVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQF  165 (238)
T ss_dssp             EEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEEC
T ss_pred             eeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEEC
Confidence            9999999986432    01123456665432            4555677778889999999999999999999999963


Q ss_pred             -----EEe--------------------cCCCeEEEEEeccccCCceEEEEecC
Q psy15206        203 -----EIV--------------------VNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       203 -----~~~--------------------~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                           ..+                    .......|.+.++..+|+|.|+|.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  219 (238)
T 2p1y_A          166 PGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAI  219 (238)
T ss_dssp             TTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEE
T ss_pred             CCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEe
Confidence                 111                    01224578888899999999999974

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.84  E-value=7.7e-19  Score=138.92  Aligned_cols=143  Identities=17%  Similarity=0.255  Sum_probs=91.1

Q ss_pred             cCCcEEEEeeeccC-CCC-eEEEEeCCeeeCC--C------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE-
Q psy15206         88 EGQSVQLECHAEGH-PIP-TISWRRENNAILP--N------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK-  156 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~--~------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~-  156 (232)
                      .++.+.|.|.+.+. |.+ .+.|++++.....  .      .......+.|.|.....+ .|.|+|.+.|..+...... 
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~  227 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIF  227 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEe
Confidence            45789999999886 655 8999996543210  0      001111235788877777 8999999999766522211 


Q ss_pred             ---------EEEEEEe----------------------------------------------------ccEEEec-ccee
Q psy15206        157 ---------IEVKVEF----------------------------------------------------APIVTVQ-STRI  174 (232)
Q Consensus       157 ---------~~l~v~~----------------------------------------------------~p~~~~~-~~~~  174 (232)
                               ..+.+..                                                    +|.+.+. +...
T Consensus       228 ~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~  307 (512)
T 1zvo_C          228 RWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQ  307 (512)
T ss_pred             cCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChH
Confidence                     1222221                                                    2344332 3333


Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeE----EEEEeccccCCceEEEEecC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+..|+.+.|.|.+.|++++  .|.|+|+|..+..           ++.|    .|.+......|.|.|+|.|.
T Consensus       308 ~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~  381 (512)
T 1zvo_C          308 DLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLN  381 (512)
T ss_pred             HhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEE
Confidence            45579999999999987443  7999999976541           1222    35555666689999999974

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.84  E-value=1.7e-20  Score=140.98  Aligned_cols=157  Identities=18%  Similarity=0.214  Sum_probs=121.3

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeec-------cCCCCeEEEEeCCeee--CC--CCcEEeeCCeEEECCCCCCCCeEE
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAE-------GHPIPTISWRRENNAI--LP--NGQTIFTGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~-------~~~~~~~~W~~~~~~~--~~--~~~~~~~~~~l~i~~~~~~~~g~y  141 (232)
                      .|.+.. .+....+.+|+.+.|.|.+.       +.+.+.+.|++++..+  ..  ..+....++.|.|.++..+|.|.|
T Consensus        18 ~p~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   96 (339)
T 3o4o_C           18 CRFRGR-HYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTY   96 (339)
T ss_dssp             CEEEEE-CSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEE
T ss_pred             hHhhCc-CceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEE
Confidence            344443 56778889999999999997       7888899999998773  22  224455678999999999999999


Q ss_pred             EEEeEeCCCCceeeEEEEEEEeccEEE--eccceeeeeccCeEEEEEE-----eecCCCCeEEEeeCCEEecCC-C----
Q psy15206        142 YCVAQNGIGRGARRKIEVKVEFAPIVT--VQSTRIGQALHHDMDLDCH-----IEAYPHPILYWAKDGEIVVND-E----  209 (232)
Q Consensus       142 ~C~~~~~~~~~~~~~~~l~v~~~p~~~--~~~~~~~~~~g~~~~l~C~-----~~~~p~~~~~W~~~g~~~~~~-~----  209 (232)
                      +|.+.+..+. ....+.+.|..++...  .......+..|+.+.|.|.     +.|.|.+.+.|+|+|..+... .    
T Consensus        97 ~C~~~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~  175 (339)
T 3o4o_C           97 VCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS  175 (339)
T ss_dssp             ECCEEETTEE-EEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEE
T ss_pred             EEEEECCcce-EEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEE
Confidence            9999997764 5566777777654321  1122346778999999999     788999999999999877643 2    


Q ss_pred             ---eEEEEEeccccCCceEEEEecC
Q psy15206        210 ---YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 ---~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                         ...|.+.++...|+|.|+|.|.
T Consensus       176 ~~~~~~L~i~~v~~~d~G~Y~C~a~  200 (339)
T 3o4o_C          176 VRGTTHLLVHDVALEDAGYYRCVLT  200 (339)
T ss_dssp             CTTSSEEEESSCCGGGCEEEEEEEE
T ss_pred             cCCcceEEEcccCHhhCeEEEEEEE
Confidence               2367788888999999999873

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.83  E-value=3.1e-19  Score=122.99  Aligned_cols=148  Identities=24%  Similarity=0.431  Sum_probs=110.9

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe--------------------------eeeEEEEeeee-
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR--------------------------LGRLHLAIPYT-   64 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~--------------------------~~~~~~~~~~~-   64 (232)
                      +|.|... +.+..+.+|++++|.|.+.+.|.+.+.|++++..                          .|.|.|..... 
T Consensus         2 ~~~~~~~-~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~   80 (189)
T 2v5t_A            2 MLTFREV-VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA   80 (189)
T ss_dssp             CCEEEEC-CSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred             Cceeecc-CCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence            6888888 8889999999999999999989999999994322                          24677765322 


Q ss_pred             -------cCceeecCCcEEecCCCC-ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCC
Q psy15206         65 -------SPEAQVDTPPVILNNSPQ-LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TGSTLQIPRIT  134 (232)
Q Consensus        65 -------~~~l~v~~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~  134 (232)
                             .+.+.+..+|.+...... ...+..|+.+.|.|.+.+.|.+.+.|++++..+........  ..+.|.|.++.
T Consensus        81 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~  160 (189)
T 2v5t_A           81 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII  160 (189)
T ss_dssp             TTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCC
T ss_pred             CCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCC
Confidence                   344555555555432222 34566799999999999999899999999988765554433  24689999999


Q ss_pred             CCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206        135 KEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      .+|.|.|+|.+.|..|. ....+.+.|
T Consensus       161 ~~d~G~Y~C~a~n~~g~-~~~~~~l~V  186 (189)
T 2v5t_A          161 NSDGGPYVCRATNKAGE-DEKQAFLQV  186 (189)
T ss_dssp             GGGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             hhhCeeEEEEEEeCCCc-eeEEEEEEE
Confidence            99999999999998776 444555554

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.83  E-value=2.9e-19  Score=128.53  Aligned_cols=150  Identities=17%  Similarity=0.254  Sum_probs=101.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCe-----EEEEeCCeeeCC---------C------CcEE-------eeCCeEEECC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPT-----ISWRRENNAILP---------N------GQTI-------FTGSTLQIPR  132 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~-----~~W~~~~~~~~~---------~------~~~~-------~~~~~l~i~~  132 (232)
                      .+....+..|+.+.|.|.+.+.+.+.     +.|++++.....         .      .+..       ..+.+|.|.+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   88 (248)
T 3pv7_A            9 AGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPG   88 (248)
T ss_dssp             TTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESS
T ss_pred             CCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCC
Confidence            45556788999999999998877664     999986432110         0      0000       0123599999


Q ss_pred             CCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeec-CCCC-eEEEeeCCEEe-----
Q psy15206        133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHP-ILYWAKDGEIV-----  205 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~g~~~-----  205 (232)
                      ++.+|.|.|+|.+.+..+. ....+.|.|..+|.+...+.. ....|+.+.|.|.+.| .|.+ .+.|+++|..+     
T Consensus        89 v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~  166 (248)
T 3pv7_A           89 IQLEEAGEYRCEVVVTPLK-AQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE  166 (248)
T ss_dssp             CCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred             CCHHHCeEEEEEEEeCCcc-ceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence            9999999999999987654 556788888888988776553 3446778889999998 7888 99999998421     


Q ss_pred             -----------c-CCCeE----EEEEeccccCCceEEEEecC
Q psy15206        206 -----------V-NDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       206 -----------~-~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                                 . .+..+    .+.+......|.|.|+|.|.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~  208 (248)
T 3pv7_A          167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVR  208 (248)
T ss_dssp             ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEE
T ss_pred             cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEE
Confidence                       1 22223    34444556688899999984

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.83  E-value=9.9e-20  Score=131.32  Aligned_cols=151  Identities=17%  Similarity=0.282  Sum_probs=105.4

Q ss_pred             CCceEeecCCcEEEEeeeccCC-----CCeEEEEeCCe--ee------------CCCCcEEee----CCeEEECCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP-----IPTISWRRENN--AI------------LPNGQTIFT----GSTLQIPRITKED  137 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~-----~~~~~W~~~~~--~~------------~~~~~~~~~----~~~l~i~~~~~~~  137 (232)
                      +....+.+|+++.|.|.+.+.+     .+.+.|++++.  .+            ....++...    ..+|.|.+++.+|
T Consensus        41 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D  120 (252)
T 3bkj_L           41 PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAED  120 (252)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCccc
Confidence            5556788999999999998877     57899998641  10            001232221    1279999999999


Q ss_pred             CeEEEEEeEeCCCCceeeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCEEecCC----
Q psy15206        138 RGAYYCVAQNGIGRGARRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEIVVND----  208 (232)
Q Consensus       138 ~g~y~C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~~~~~----  208 (232)
                      .|.|.|.+.+..+........+.|..   +|.+...+.......|+.++|.|.+.|. |.+ .+.|+|+|..+...    
T Consensus       121 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~  200 (252)
T 3bkj_L          121 LGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNS  200 (252)
T ss_dssp             CEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEE
T ss_pred             CEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeee
Confidence            99999999876543222334555543   5777665444344579999999999884 443 79999999876432    


Q ss_pred             --------CeE----EEEEeccccCCceEEEEecC
Q psy15206        209 --------EYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 --------~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                              +.+    .+.+..+...|+|.|+|.|.
T Consensus       201 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~  235 (252)
T 3bkj_L          201 WTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEAT  235 (252)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEE
T ss_pred             cCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEE
Confidence                    122    35666777789999999984

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.83  E-value=6.2e-20  Score=136.67  Aligned_cols=158  Identities=15%  Similarity=0.203  Sum_probs=111.8

Q ss_pred             eecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        69 ~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      .+..+|.+.. .+. ..+.+|+.+.|.|.+.+. .+.+.|++++..+............|.|.++..+|.|.|.|.+.+.
T Consensus        20 ~~~~~P~i~~-~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~   96 (316)
T 3vh8_G           20 GGQDKPFLSA-WPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHP   96 (316)
T ss_dssp             ----CCEEEE-ESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCS
T ss_pred             CCCCCCEeec-cCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcC
Confidence            3344555543 333 467799999999999887 6789999998765332112224568999999999999999998753


Q ss_pred             CC----CceeeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC----------CCeE
Q psy15206        149 IG----RGARRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN----------DEYH  211 (232)
Q Consensus       149 ~~----~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~----------~~~~  211 (232)
                      .+    ...+..+.+.|..   +|.+...+... +..|+.++|.|.+. .+.+.+.|+|+|..+..          ....
T Consensus        97 ~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~  174 (316)
T 3vh8_G           97 HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKA  174 (316)
T ss_dssp             SSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEE
T ss_pred             CCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeeecCCCceE
Confidence            21    1234556666653   45666555544 77899999999994 45678999999875531          2345


Q ss_pred             EEEEeccccCCceEEEEecC
Q psy15206        212 SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       212 ~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+.++...|+|.|+|.|.
T Consensus       175 ~L~i~~v~~~D~G~Y~C~a~  194 (316)
T 3vh8_G          175 NFSIGPMMLALAGTYRCYGS  194 (316)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EEEECCCChhhCceEEEEEe
Confidence            67888889999999999874

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.83  E-value=2.6e-19  Score=128.40  Aligned_cols=152  Identities=15%  Similarity=0.174  Sum_probs=104.2

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--e---eC---------CCCcEEee----CCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--A---IL---------PNGQTIFT----GSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~---~~---------~~~~~~~~----~~~l~i~~~~~~~~g~y  141 (232)
                      .+....+.+|+++.|.|.+.+.+.+.+.|+++..  .   +.         ...++...    ..+|.|.+++.+|+|.|
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   86 (242)
T 2znx_A            7 SPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (242)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEE
Confidence            3455678899999999999988888999998531  1   10         11233221    23799999999999999


Q ss_pred             EEEeEeCCCCceeeEEEEEEEeccE-------------EEeccceeeeeccCeEEEEEEeecCC--CCeEEEeeC--CEE
Q psy15206        142 YCVAQNGIGRGARRKIEVKVEFAPI-------------VTVQSTRIGQALHHDMDLDCHIEAYP--HPILYWAKD--GEI  204 (232)
Q Consensus       142 ~C~~~~~~~~~~~~~~~l~v~~~p~-------------~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~--g~~  204 (232)
                      .|.+.+..+........|.|..+|.             ....+....+..|++++|.|.+.+.+  .+.+.|+|+  |..
T Consensus        87 ~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~  166 (242)
T 2znx_A           87 FCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNR  166 (242)
T ss_dssp             EEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSC
T ss_pred             EEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCC
Confidence            9999986433222344666655442             22333344578999999999999876  468999984  221


Q ss_pred             ec---------------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        205 VV---------------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       205 ~~---------------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.                           ....+.|.+.++..+|+|.|+|.|.
T Consensus       167 ~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  220 (242)
T 2znx_A          167 LEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANX  220 (242)
T ss_dssp             EEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEET
T ss_pred             cEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEecc
Confidence            10                           1123577888889999999999985

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.83  E-value=1e-19  Score=129.14  Aligned_cols=147  Identities=18%  Similarity=0.319  Sum_probs=94.9

Q ss_pred             CceEeecCCcEEEEeeeccCCCC---eEEEEeCCeeeC-----------C------CCcEEe-------eCCeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIP---TISWRRENNAIL-----------P------NGQTIF-------TGSTLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~-----------~------~~~~~~-------~~~~l~i~~~~  134 (232)
                      ..+.+.+|+++.|.|.+.+.+.+   .+.|++++....           .      ..+...       .+.+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            34677899999999998765443   599998764210           0      011111       12379999999


Q ss_pred             CCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeec-CCCCeEEEeeCCEEe-c------
Q psy15206        135 KEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHPILYWAKDGEIV-V------  206 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~~~-~------  206 (232)
                      .+|.|.|.|.+.+..+. ...  .+.+...+.....+....+..|+.+.|.|.+.| .|.|.|.|++++..+ .      
T Consensus        92 ~~D~G~Y~C~a~n~~~~-~~~--~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~  168 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFY-EKA--LVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPV  168 (226)
T ss_dssp             GGGCEEEEEEEEETTEE-EEE--EEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCC
T ss_pred             hHHCeeEEEEEECCCcE-EEE--EEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEE
Confidence            99999999999997654 333  333433333333344456778999999999988 599999999965332 2      


Q ss_pred             ---CCCeEE-EEEeccccCCceEEEEecC
Q psy15206        207 ---NDEYHS-ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 ---~~~~~~-~~~~~~~~~d~g~Y~C~~~  231 (232)
                         .++.+. +++..+...|+|+|+|.|+
T Consensus       169 ~~~~~g~~~v~s~l~v~~~d~G~YtC~a~  197 (226)
T 4f80_A          169 VADGVGLYAVAASVIMRGSSGEGVSCTIR  197 (226)
T ss_dssp             EECTTSCEEEEEEEEECC----CEEEEEE
T ss_pred             EECCCCcEEEEEEEEechhcCcEEEEEEE
Confidence               122232 3344567789999999874

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.83  E-value=2.3e-19  Score=125.00  Aligned_cols=144  Identities=19%  Similarity=0.344  Sum_probs=101.8

Q ss_pred             eEeecCCcEEEEeeecc----CCCCeEEEEeCCeeeCC------------CCcEE--e-eCCeEEECCCCCCCCeEEEEE
Q psy15206         84 SVAKEGQSVQLECHAEG----HPIPTISWRRENNAILP------------NGQTI--F-TGSTLQIPRITKEDRGAYYCV  144 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~----~~~~~~~W~~~~~~~~~------------~~~~~--~-~~~~l~i~~~~~~~~g~y~C~  144 (232)
                      +.+..|+.+.|.|.+.+    .+.+.+.|++++..+..            ..+..  . .+.+|.|.+++.+|.|.|.|.
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEE
Confidence            56778999999999853    35578999999876520            11111  1 245899999999999999999


Q ss_pred             eEeCCCCce----eeEEEEEEEec---cEEEeccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCC--------
Q psy15206        145 AQNGIGRGA----RRKIEVKVEFA---PIVTVQSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVND--------  208 (232)
Q Consensus       145 ~~~~~~~~~----~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~--------  208 (232)
                      +.+..+...    ...+.|.|..+   |.+...    ....|+.+.|.|.+ .|.|.|.+.|+++|..+...        
T Consensus        84 ~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~  159 (201)
T 1dr9_A           84 VLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDP  159 (201)
T ss_dssp             EEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECT
T ss_pred             EEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecC
Confidence            999765433    35666777654   443332    12458899999999 49999999999999876532        


Q ss_pred             --CeEEE-EEeccccCCceEEEEecC
Q psy15206        209 --EYHSI-SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 --~~~~~-~~~~~~~~d~g~Y~C~~~  231 (232)
                        ..+.+ ........|.|.|+|.|.
T Consensus       160 ~~~~~~~~~~~~v~~~d~g~Y~C~a~  185 (201)
T 1dr9_A          160 ETELYAVSSKLDFNMTTNHSFMCLIK  185 (201)
T ss_dssp             TTCCEEEEEEEEEETTSCEEEEEEEE
T ss_pred             CCcEEEEEEEEEEEecCCCEEEEEEe
Confidence              22222 223344579999999974

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.83  E-value=6.3e-21  Score=135.97  Aligned_cols=151  Identities=15%  Similarity=0.264  Sum_probs=87.3

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee---C---------CCCcE----EeeCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI---L---------PNGQT----IFTGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~---~---------~~~~~----~~~~~~l~i~~~~~~~~g~y~  142 (232)
                      +....+.+|+++.|.|.+.+.+.+.+.|++++.  .+   .         ...++    .....+|.|.+++.+|.|.|.
T Consensus        30 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  109 (233)
T 3bqu_C           30 PASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYY  109 (233)
T ss_dssp             CSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEE
T ss_pred             CCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEE
Confidence            455667789999999999887777899998542  11   0         01111    112237999999999999999


Q ss_pred             EEeEeCCCCceeeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecCC---------
Q psy15206        143 CVAQNGIGRGARRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVND---------  208 (232)
Q Consensus       143 C~~~~~~~~~~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~---------  208 (232)
                      |.+.+..+........+.|..   +|.+...+.......|++++|.|.+.|.+++  .+.|+|+|..+..+         
T Consensus       110 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~  189 (233)
T 3bqu_C          110 CLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQD  189 (233)
T ss_dssp             EEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCC
T ss_pred             EEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCcc
Confidence            999876543222223444443   6777665444344579999999999885443  79999998765432         


Q ss_pred             ---CeE----EEEEeccccCCceEEEEecC
Q psy15206        209 ---EYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 ---~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                         ..+    .+.+......|+|.|+|.|.
T Consensus       190 ~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~  219 (233)
T 3bqu_C          190 SKDSTYSMSSTLTLTKDEYERHNSYTCEAT  219 (233)
T ss_dssp             TTTCCEEEEEEEEEEHHHHHTCCCEEEEEE
T ss_pred             CCCCCEEEEEEEEECHHHhCCCCCEEEEEE
Confidence               112    35556666689999999974

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.83  E-value=1.3e-18  Score=137.53  Aligned_cols=143  Identities=13%  Similarity=0.178  Sum_probs=94.3

Q ss_pred             eecCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCC---c-------EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206         86 AKEGQSVQLECHAEGHPI--PTISWRRENNAILPNG---Q-------TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA  153 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~---~-------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~  153 (232)
                      +..|+.+.|.|.+.|..+  ..+.|+++|..+....   .       .....+.|.|..+...|.|.|+|.+.|..+...
T Consensus       309 ~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~  388 (512)
T 1zvo_C          309 LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ  388 (512)
T ss_pred             hccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC
Confidence            446999999999988533  3799999998754110   0       011124588999999999999999999765422


Q ss_pred             eeEEEEEE----EeccEEEeccceeeeeccCeEE-EEEEeecCCCC--eEEEeeCCEEecCC------------Ce-EE-
Q psy15206        154 RRKIEVKV----EFAPIVTVQSTRIGQALHHDMD-LDCHIEAYPHP--ILYWAKDGEIVVND------------EY-HS-  212 (232)
Q Consensus       154 ~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~-l~C~~~~~p~~--~~~W~~~g~~~~~~------------~~-~~-  212 (232)
                      .+.+....    ..+|.+...+...   .|+.+. |.|.+.|++++  .+.|+|||..+..+            .. |. 
T Consensus       389 ~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~  465 (512)
T 1zvo_C          389 RLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWA  465 (512)
T ss_pred             ceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEE
Confidence            22222211    2456665544322   788899 99999996554  58999999876432            11 22 


Q ss_pred             ---EEEeccccCCceEEEEecC
Q psy15206        213 ---ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       213 ---~~~~~~~~~d~g~Y~C~~~  231 (232)
                         +.+......|.|.|+|.|.
T Consensus       466 ~s~L~v~~~~~~~~g~YtC~v~  487 (512)
T 1zvo_C          466 WSVLRVPAPPSPQPATYTCVVS  487 (512)
T ss_pred             EEEEEECchhcCCCCeEEEEEE
Confidence               2223333456999999974

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.83  E-value=1.3e-19  Score=130.69  Aligned_cols=143  Identities=13%  Similarity=0.162  Sum_probs=103.3

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc-----EEeeCCeEEECCCCCCCCeEEEEEeEeCC----CCcee
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-----TIFTGSTLQIPRITKEDRGAYYCVAQNGI----GRGAR  154 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~~~g~y~C~~~~~~----~~~~~  154 (232)
                      ..+.+|+++.|.|.+.+ +.+.+.|+|++..+.....     .......|.|.+++.+|+|.|+|.+.+..    ....+
T Consensus        16 ~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S   94 (257)
T 1b6u_A           16 PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPS   94 (257)
T ss_dssp             SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCC
T ss_pred             CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEeccCCCccccccC
Confidence            56779999999999864 4568999998864321100     01123579999999999999999997532    12234


Q ss_pred             eEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC----------CCeEEEEEeccccC
Q psy15206        155 RKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN----------DEYHSISNFGTSEG  221 (232)
Q Consensus       155 ~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~----------~~~~~~~~~~~~~~  221 (232)
                      ..+.+.|..   +|.+...+. ..+..|++++|.|.+.+.+ +.|.|+|+|..+..          .....+.+.+++  
T Consensus        95 ~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--  170 (257)
T 1b6u_A           95 DPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--  170 (257)
T ss_dssp             CCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--
T ss_pred             CCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCceeEEEEecccc--
Confidence            566777764   466666554 3578999999999998764 68999999865431          124566777776  


Q ss_pred             CceEEEEecC
Q psy15206        222 TTGSLQCKVP  231 (232)
Q Consensus       222 d~g~Y~C~~~  231 (232)
                      |+|.|+|.+.
T Consensus       171 D~G~Y~C~a~  180 (257)
T 1b6u_A          171 HGGTYRCFGS  180 (257)
T ss_dssp             SCEEEEEEEE
T ss_pred             cCEEEEEEEE
Confidence            9999999974

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.4e-19  Score=133.10  Aligned_cols=146  Identities=16%  Similarity=0.221  Sum_probs=115.2

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      +|.+. ..+....+.+|+.+.|.|.+.+    .+.|++++..+   ......++.|.|.++..+|.|.|+|.+.+  +. 
T Consensus        12 ~P~i~-~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~-   80 (290)
T 2o26_X           12 PPSIH-PAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN---EMVENKKNEWIQEKAEATRTGTYTCSNSN--GL-   80 (290)
T ss_dssp             CCEES-SCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS---CEEEECSSEEEETTCCGGGCEEEEEEESS--SC-
T ss_pred             CCEEe-CCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce---eeecCCCceEEEeccCHHhCeEEEEEeeC--Cc-
Confidence            44444 3566778889999999999987    89999998765   12223347899999999999999999998  32 


Q ss_pred             eeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCC-CeEEE-eeCCEEecCCCeE------EEEEeccccCCce
Q psy15206        153 ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH-PILYW-AKDGEIVVNDEYH------SISNFGTSEGTTG  224 (232)
Q Consensus       153 ~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W-~~~g~~~~~~~~~------~~~~~~~~~~d~g  224 (232)
                       ...+.+.|..+|.....+....+..|+.+.|.|.+.+ |. +.+.| ++||..+....++      .+.+.++...|+|
T Consensus        81 -~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G  158 (290)
T 2o26_X           81 -TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR  158 (290)
T ss_dssp             -EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTT
T ss_pred             -cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCC
Confidence             6677888888776656666777889999999999986 77 89999 5788776544333      5667788889999


Q ss_pred             -EEEEecC
Q psy15206        225 -SLQCKVP  231 (232)
Q Consensus       225 -~Y~C~~~  231 (232)
                       .|+|.|.
T Consensus       159 ~~Y~C~a~  166 (290)
T 2o26_X          159 LCVRCAAQ  166 (290)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEEE
Confidence             9999874

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.83  E-value=1.4e-19  Score=130.61  Aligned_cols=151  Identities=17%  Similarity=0.294  Sum_probs=107.2

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeC--Ceee-----------------CCCCcEEee------CCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRRE--NNAI-----------------LPNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~-----------------~~~~~~~~~------~~~l~i~~~  133 (232)
                      +....+.+|+++.|.|.+.+.+  .+.+.|++.  +..+                 ....++...      ..+|.|.++
T Consensus         8 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   87 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSL   87 (253)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCC
Confidence            4456788999999999998754  668999982  2111                 001222221      124999999


Q ss_pred             CCCCCeEEEEEeEeCCCCceeeEEEEEEEe---------------ccEEEeccceeeeeccCeEEEEEEeecCCCC----
Q psy15206        134 TKEDRGAYYCVAQNGIGRGARRKIEVKVEF---------------APIVTVQSTRIGQALHHDMDLDCHIEAYPHP----  194 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~----  194 (232)
                      +.+|+|.|.|.+.+..+........+.|..               +|.+...+....+..|++++|.|.+.+.+.+    
T Consensus        88 ~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~  167 (253)
T 3uzq_A           88 TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDRYGNS  167 (253)
T ss_dssp             CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEETTEE
T ss_pred             CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccccCCCc
Confidence            999999999999985544323445566653               4566667777888999999999999998876    


Q ss_pred             eEEEeeC--CEEec---------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        195 ILYWAKD--GEIVV---------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       195 ~~~W~~~--g~~~~---------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.|+|+  +..+.                     ....+.|.+.++..+|+|.|.|.|.
T Consensus       168 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  227 (253)
T 3uzq_A          168 FMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRS  227 (253)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEc
Confidence            8999984  21110                     1224568888999999999999984

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.83  E-value=9.3e-19  Score=120.84  Aligned_cols=138  Identities=21%  Similarity=0.317  Sum_probs=105.0

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCC-CCeEEEEe-CcEee-----------------------------eeEEEE
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHP-IPTISWRR-NFKRL-----------------------------GRLHLA   60 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p-~~~~~W~~-~~~~~-----------------------------~~~~~~   60 (232)
                      |+.|... +.+..+.+|++++|.|.+.+.+ .+.+.|++ ++..+                             |.|.|.
T Consensus         2 p~~v~~~-p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (191)
T 1epf_A            2 VLQVDIV-PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV   80 (191)
T ss_dssp             -CCEEEE-SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             ceEEEec-CCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEE
Confidence            4567766 8889999999999999999866 88999999 43221                             345554


Q ss_pred             eeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC--CcE-EeeCCeEEE
Q psy15206         61 IPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN--GQT-IFTGSTLQI  130 (232)
Q Consensus        61 ~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~--~~~-~~~~~~l~i  130 (232)
                      ....       .+.|.+..+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+...  .+. ...++.|.|
T Consensus        81 ~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i  159 (191)
T 1epf_A           81 VTAEDGTQSEATVNVKIFQKLMFKN-APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI  159 (191)
T ss_dssp             EEETTTEEEEEEEEEEEECCSEEEE-CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEE
T ss_pred             EEcCCCcceEEEEEEEeecCceEec-CCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEE
Confidence            4222       45566666776654 455667889999999999999999999999999887432  222 334568999


Q ss_pred             CCCCCCCCeEEEEEeEeCCCC
Q psy15206        131 PRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       131 ~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .++..+|.|.|+|.+.|..+.
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~~~  180 (191)
T 1epf_A          160 RGIKKTDEGTYRCEGRILARG  180 (191)
T ss_dssp             TTCCGGGCEEEEEEEEEGGGT
T ss_pred             CCCChhhCEEEEEEEEEecce
Confidence            999999999999999997643

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.82  E-value=4.3e-19  Score=127.48  Aligned_cols=151  Identities=22%  Similarity=0.324  Sum_probs=104.4

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEe----------------CCeeeCCC---CcEEee-----CCeEEECCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRR----------------ENNAILPN---GQTIFT-----GSTLQIPRITKE  136 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~----------------~~~~~~~~---~~~~~~-----~~~l~i~~~~~~  136 (232)
                      +....+.+|+.+.|.|.+.+.+.+.+.|++                ++......   .++...     ..+|.|.+++.+
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~   87 (246)
T 4dzb_B            8 PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPE   87 (246)
T ss_dssp             CSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGG
T ss_pred             CcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHH
Confidence            455678899999999999988888999998                22221111   222221     237999999999


Q ss_pred             CCeEEEEEeEeCCC---CceeeEEEEEEE------eccEEEec-cceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEE
Q psy15206        137 DRGAYYCVAQNGIG---RGARRKIEVKVE------FAPIVTVQ-STRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEI  204 (232)
Q Consensus       137 ~~g~y~C~~~~~~~---~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~  204 (232)
                      |.|.|.|.+.+..+   ........+.|.      .+|.+... +....+..|+.+.|.|.+.|.|++  .+.|+|+|..
T Consensus        88 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~  167 (246)
T 4dzb_B           88 DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE  167 (246)
T ss_dssp             GCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE
T ss_pred             HCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEE
Confidence            99999999986532   112233456665      35665443 344445569999999999987665  8999999988


Q ss_pred             ecC----------------CCeEE----EEEeccccCC-ceEEEEecC
Q psy15206        205 VVN----------------DEYHS----ISNFGTSEGT-TGSLQCKVP  231 (232)
Q Consensus       205 ~~~----------------~~~~~----~~~~~~~~~d-~g~Y~C~~~  231 (232)
                      +..                ++.+.    +.+......| .|.|+|.|.
T Consensus       168 l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~  215 (246)
T 4dzb_B          168 VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ  215 (246)
T ss_dssp             ECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEE
T ss_pred             CCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEE
Confidence            753                33343    4445555566 999999984

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.82  E-value=6.1e-20  Score=128.22  Aligned_cols=131  Identities=19%  Similarity=0.279  Sum_probs=93.4

Q ss_pred             ecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE----
Q psy15206         87 KEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE----  162 (232)
Q Consensus        87 ~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~----  162 (232)
                      .+|+++.|.|.+   +.+.+.|+++|..+...   ...++.|.|.++..+|+|.|+|.+.+...    ..+.+.+.    
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~---~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s----~~~~v~v~~~~~   85 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGSQNKS----KPLQVYYRMGSA   85 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEEEEE---ESSCCCEEEEEGGGCCEEEEEEESSSSCC----CCEEEEEEC---
T ss_pred             cCCCeEEEEEcC---CCCEEEEEECCEECCCC---CCCCCeEEeCCCCcCCCEEEEEEecCCCC----eeEEEEEEEecc
Confidence            479999999998   67889999999876421   12356799999999999999999654321    12333332    


Q ss_pred             -----------------------e----ccEEEeccceeeee-ccCeEEEEEEeecCCCCeEEEeeCCEEecCC------
Q psy15206        163 -----------------------F----APIVTVQSTRIGQA-LHHDMDLDCHIEAYPHPILYWAKDGEIVVND------  208 (232)
Q Consensus       163 -----------------------~----~p~~~~~~~~~~~~-~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~------  208 (232)
                                             .    ++.+...+.  .+. .|++++|.|.  +.|.+.+.|+|+|..+...      
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~  161 (204)
T 1sy6_A           86 DDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY--KVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNI  161 (204)
T ss_dssp             ---------------------------------CCCC--EEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTE
T ss_pred             ccccccccccccccccccccccccccccccceecCCc--eeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceE
Confidence                                   0    112222222  233 8999999999  7888999999999887532      


Q ss_pred             --CeEEEEEecc-ccCCceEEEEecC
Q psy15206        209 --EYHSISNFGT-SEGTTGSLQCKVP  231 (232)
Q Consensus       209 --~~~~~~~~~~-~~~d~g~Y~C~~~  231 (232)
                        ....|.+.++ ...|+|.|+|.|.
T Consensus       162 ~~~~~~L~I~~v~~~~D~G~Y~C~A~  187 (204)
T 1sy6_A          162 GSDEDHLSLKEFSELEQSGYYVCYPR  187 (204)
T ss_dssp             EEETTEEEETTCCHHHHCEEEEEEET
T ss_pred             ecCCCEEEEeeCCccccCEEEEEEec
Confidence              1335777888 8899999999875

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.82  E-value=2.3e-19  Score=121.77  Aligned_cols=134  Identities=14%  Similarity=0.203  Sum_probs=98.6

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC------------CCcEEe--eCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILP------------NGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~------------~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ..+..|+++.|.|.+.+ +.+.+.|++++..+..            ..+...  .+++|.|.+++..|+|.|.|.+.+..
T Consensus         5 v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~   83 (171)
T 1ccz_A            5 IYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (171)
T ss_dssp             EEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCCC
Confidence            46778999999999854 7778999998764321            112222  35789999999999999999998765


Q ss_pred             CCceeeEEEEEEEec---cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEE
Q psy15206        150 GRGARRKIEVKVEFA---PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSL  226 (232)
Q Consensus       150 ~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y  226 (232)
                      +   ...+.|.|..+   |.+.....        ...|.|.+.+.|.|.+.|+++|..+.......+....  ..|+|.|
T Consensus        84 ~---~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~~l~~~~--~~~~g~Y  150 (171)
T 1ccz_A           84 D---TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQW--TNLRAPF  150 (171)
T ss_dssp             S---CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEEC--SCCSSCE
T ss_pred             C---cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEECCEECcCCcceEEEEec--cCCCceE
Confidence            5   45667777654   33332211        1379999999999999999999988755555555443  5889999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      +|.|.
T Consensus       151 ~C~a~  155 (171)
T 1ccz_A          151 KCKAV  155 (171)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99974

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.82  E-value=2.5e-19  Score=129.49  Aligned_cols=150  Identities=19%  Similarity=0.327  Sum_probs=106.6

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eee--C---------------CCCcEEee------CCeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAI--L---------------PNGQTIFT------GSTLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~--~---------------~~~~~~~~------~~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.+.+  .+.+.|++..  ..+  .               ...++...      ..+|.|.+++
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   89 (256)
T 3umt_A           10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLT   89 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCC
Confidence            335677899999999998765  5689999742  111  0               01222221      1249999999


Q ss_pred             CCCCeEEEEEeEeCCC---CceeeEEEEEEEe----------------ccEEEeccceeeeeccCeEEEEEEeecCCCCe
Q psy15206        135 KEDRGAYYCVAQNGIG---RGARRKIEVKVEF----------------APIVTVQSTRIGQALHHDMDLDCHIEAYPHPI  195 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~---~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  195 (232)
                      .+|+|.|.|.+.+...   ........|.|..                +|.+...+....+..|++++|.|.+.+.+.+.
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~  169 (256)
T 3umt_A           90 SEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSN  169 (256)
T ss_dssp             GGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTC
T ss_pred             cccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcE
Confidence            9999999999987621   1123345566653                56677777778889999999999999998889


Q ss_pred             EEEeeC--CEEec---------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        196 LYWAKD--GEIVV---------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       196 ~~W~~~--g~~~~---------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|+|+  +..+.                     ....+.|.+.++..+|+|.|.|.|.
T Consensus       170 v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~  228 (256)
T 3umt_A          170 LNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQY  228 (256)
T ss_dssp             EEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEC
T ss_pred             EEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEe
Confidence            999984  21111                     1234468888999999999999985

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.82  E-value=3.2e-20  Score=130.00  Aligned_cols=146  Identities=16%  Similarity=0.199  Sum_probs=100.2

Q ss_pred             eecCCcEEEEeeeccCC---C-CeEEEEeCCeeeCCCC---------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         86 AKEGQSVQLECHAEGHP---I-PTISWRRENNAILPNG---------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~~---~-~~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      +..|+.+.|.|.+.+.+   . ..+.|++++..+....         ......+.|.|.+++.+|.|.|.|.+.+..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            67899999999998874   2 4799999997654211         111123469999999999999999999976642


Q ss_pred             -eeeEEEE--EEEeccEEEeccceeeeeccCeEEEEEEeecC-CC-CeEEEeeCCEEecC----------CCeEEE----
Q psy15206        153 -ARRKIEV--KVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY-PH-PILYWAKDGEIVVN----------DEYHSI----  213 (232)
Q Consensus       153 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~g~~~~~----------~~~~~~----  213 (232)
                       ..+.+.+  .+..+|.+...+.......|+.+.|.|.+.|+ |+ +.+.|+|||..+..          ++.|.+    
T Consensus        95 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l  174 (207)
T 2vol_A           95 PIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKL  174 (207)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEE
T ss_pred             ceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEE
Confidence             2233333  44567887665544333458999999999985 44 38999999987532          122332    


Q ss_pred             EEeccccCCceEEEEecC
Q psy15206        214 SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       214 ~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+......|.|.|+|.|.
T Consensus       175 ~i~~~~~~~~g~ytC~a~  192 (207)
T 2vol_A          175 NVQKSNWEAGNTFTCSVL  192 (207)
T ss_dssp             EEEHHHHSSCCEEEEEEE
T ss_pred             EECHHHcCCCCEEEEEEE
Confidence            223333367899999974

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.82  E-value=4.3e-20  Score=130.35  Aligned_cols=146  Identities=22%  Similarity=0.222  Sum_probs=100.0

Q ss_pred             eecCCcEEEEeeeccC---CC-CeEEEEeCCeeeCCCCc---------EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         86 AKEGQSVQLECHAEGH---PI-PTISWRRENNAILPNGQ---------TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~---~~-~~~~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      +.+|+.+.|.|.+.+.   +. +.+.|++++..+.....         .....+.|.|.+++.+|.|.|+|.+.+..+..
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTCSS
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcCCC
Confidence            6789999999999886   33 68999999977643211         11123469999999999999999999976542


Q ss_pred             -eeeEEEE--EEEeccEEEeccceeeeeccCeEEEEEEeec-CCCC-eEEEeeCCEEecC----------CCeEEEE---
Q psy15206        153 -ARRKIEV--KVEFAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHP-ILYWAKDGEIVVN----------DEYHSIS---  214 (232)
Q Consensus       153 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~g~~~~~----------~~~~~~~---  214 (232)
                       ..+.+.+  .+..+|.+...+.......|+.+.|.|.+.| +|.+ .+.|+|+|..+..          ++.+.+.   
T Consensus       103 ~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l  182 (218)
T 2rgs_A          103 PIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKL  182 (218)
T ss_dssp             CEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEE
T ss_pred             cceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEE
Confidence             2222222  3456787766554433335999999999998 5665 8999999987632          2223332   


Q ss_pred             -EeccccCCceEEEEecC
Q psy15206        215 -NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       215 -~~~~~~~d~g~Y~C~~~  231 (232)
                       +......|.|.|+|.|.
T Consensus       183 ~v~~~~~~d~g~YtC~a~  200 (218)
T 2rgs_A          183 NMKTSKWEKTDSFSCNVR  200 (218)
T ss_dssp             EEEHHHHHHCSCEEEEEE
T ss_pred             EECHHHcCCCCeEEEEEE
Confidence             22222346899999974

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.82  E-value=7.8e-20  Score=132.27  Aligned_cols=148  Identities=16%  Similarity=0.235  Sum_probs=105.1

Q ss_pred             eEeecCCcEEEEeeeccCC--CCeEEEEeCC--eee---C-------------CCCcEEee------CCeEEECCCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHP--IPTISWRREN--NAI---L-------------PNGQTIFT------GSTLQIPRITKED  137 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~---~-------------~~~~~~~~------~~~l~i~~~~~~~  137 (232)
                      ..+.+|+++.|.|.+.+.+  .+.+.|+++.  ..+   .             ...++...      ..+|.|.+++.+|
T Consensus        10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (257)
T 1f3r_B           10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (257)
T ss_dssp             SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred             ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence            4677899999999998875  6789999862  111   0             12233322      2379999999999


Q ss_pred             CeEEEEEeEeCCC------Cc--eeeEEEEEEEecc---------------EEEeccceeeeeccCeEEEEEEeecCCCC
Q psy15206        138 RGAYYCVAQNGIG------RG--ARRKIEVKVEFAP---------------IVTVQSTRIGQALHHDMDLDCHIEAYPHP  194 (232)
Q Consensus       138 ~g~y~C~~~~~~~------~~--~~~~~~l~v~~~p---------------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  194 (232)
                      +|.|.|.+.+..|      ..  ......|.|...|               .+...+....+..|++++|.|.+.+.+.+
T Consensus        90 sG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  169 (257)
T 1f3r_B           90 TGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINN  169 (257)
T ss_dssp             CEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBT
T ss_pred             CEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCC
Confidence            9999999998743      10  1133466666542               22334556678899999999999999888


Q ss_pred             eEEEee--CCEEec---------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        195 ILYWAK--DGEIVV---------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       195 ~~~W~~--~g~~~~---------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.|+|  +|..+.                     ....+.|.+.++..+|+|.|.|.|.
T Consensus       170 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  229 (257)
T 1f3r_B          170 YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQY  229 (257)
T ss_dssp             CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEe
Confidence            999999  554220                     1234568888899999999999874

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.82  E-value=1.1e-18  Score=124.79  Aligned_cols=158  Identities=23%  Similarity=0.437  Sum_probs=110.3

Q ss_pred             cCCCeeecCC---CcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee----------------------------eeEE
Q psy15206         10 DTPPVILNNS---TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------------------------GRLH   58 (232)
Q Consensus        10 ~~~P~i~~~~---~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~----------------------------~~~~   58 (232)
                      .++|.++..+   +..+.+.+|++++|.|.+.+.|.+.+.|++++..+                            |.|.
T Consensus         9 ~~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~   88 (241)
T 3grw_A            9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT   88 (241)
T ss_dssp             --CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred             CCCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEE
Confidence            3477776441   44688999999999999999899999999954322                            4777


Q ss_pred             EEeeee------cCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEe----CCeeeCCCCcEE--
Q psy15206         59 LAIPYT------SPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRR----ENNAILPNGQTI--  122 (232)
Q Consensus        59 ~~~~~~------~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~----~~~~~~~~~~~~--  122 (232)
                      |.....      ...|.|..    ++......+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+.......  
T Consensus        89 C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~  168 (241)
T 3grw_A           89 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVT  168 (241)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEE
T ss_pred             EEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeee
Confidence            766322      44455543    34444444566678889999999999999999999999    776654332211  


Q ss_pred             ----------eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEE
Q psy15206        123 ----------FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT  168 (232)
Q Consensus       123 ----------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~  168 (232)
                                ...+.|.|.++..+|.|.|+|.+.|..|. ....+.|.|..+|...
T Consensus       169 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          169 VLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAE  223 (241)
T ss_dssp             EEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEEEC-------
T ss_pred             eeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcce-EEEEEEEEecCCCCCC
Confidence                      12347999999999999999999998887 5677788887766543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.82  E-value=2.1e-18  Score=119.48  Aligned_cols=119  Identities=17%  Similarity=0.194  Sum_probs=90.6

Q ss_pred             eEeecCCcEEEEeeeccCCCC--eEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIP--TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      ..+..|+++.|.|.+ +.|.|  .++|++.+..+ ...........|.|.+++.+|.|.|.|.+.+..+. ..+.+.|.|
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l-~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-~~~~~~ltV   93 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL-GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-FQHTVQLLV   93 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT-CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc-CcEEecCCccEEEECccCcccCceEEEEEEeCCCc-eEEEEEEEE
Confidence            578899999999999 87777  89999865433 11111223457999999999999999999997665 567889999


Q ss_pred             EeccEEEeccceeeeeccCeEEEEEEeecC-CC----CeEEEeeCCEEecC
Q psy15206        162 EFAPIVTVQSTRIGQALHHDMDLDCHIEAY-PH----PILYWAKDGEIVVN  207 (232)
Q Consensus       162 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~----~~~~W~~~g~~~~~  207 (232)
                      ..+|........ ....|+.+ |.|.+.+. |.    ++|.|+|||..+..
T Consensus        94 ~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~  142 (210)
T 1gsm_A           94 YAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEG  142 (210)
T ss_dssp             EBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTT
T ss_pred             EecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEccc
Confidence            998865432222 55677888 99999885 64    37999999988753

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.82  E-value=1.1e-18  Score=118.33  Aligned_cols=143  Identities=18%  Similarity=0.301  Sum_probs=106.7

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCC-CCeEEEEeCcEee-----------------eeEEEEeee----ecCcee
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHP-IPTISWRRNFKRL-----------------GRLHLAIPY----TSPEAQ   69 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p-~~~~~W~~~~~~~-----------------~~~~~~~~~----~~~~l~   69 (232)
                      +|.|... +....+.+|++++|.|.+.+.| .+.+.|++++..+                 |.|.|....    ..+.|.
T Consensus         4 ~p~i~~~-p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~~~~~~~~~~~d~G~Y~C~~~~~~~s~~~~l~   82 (170)
T 3ry4_A            4 KAVLKLE-PPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLT   82 (170)
T ss_dssp             BCEEEEE-SCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCSSEEEEECCGGGCEEEEEEETTSBCCCCEEEE
T ss_pred             CCEEEeC-CCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCccceEEEecccccCeEEEEEEeCCCceEeEEEE
Confidence            5777777 7777899999999999999876 6799999965433                 577887632    255667


Q ss_pred             ecCCcEEecCCCCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         70 VDTPPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        70 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      |..++....  .....+.+|+.+.|.|.+. +.+.+.+.|++++..+.    .......|.|.++..+|.|.|+|.+.|.
T Consensus        83 v~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~n~  156 (170)
T 3ry4_A           83 VLFEWLVLQ--TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK----FSHLDPTFSIPQANHSHSGDYHCTGNIG  156 (170)
T ss_dssp             EECCSEEEE--CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEE----EESSCCEEEESSCCGGGCEEEEEEEEET
T ss_pred             EECCceEec--CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcc----ccCCCCeEEEEeccccCCEEEEEEEEeC
Confidence            776665543  2334677899999999995 45668899999988753    1223567999999999999999999998


Q ss_pred             CCCceeeEEEEEE
Q psy15206        149 IGRGARRKIEVKV  161 (232)
Q Consensus       149 ~~~~~~~~~~l~v  161 (232)
                      .+...+..+.+.|
T Consensus       157 ~g~~~s~~~~l~V  169 (170)
T 3ry4_A          157 YTLFSSKPVTITV  169 (170)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             cCccccccEEEEE
Confidence            7654444455544

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.82  E-value=5.2e-19  Score=129.61  Aligned_cols=150  Identities=19%  Similarity=0.345  Sum_probs=107.2

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeCCe--eeC-----------------CCCcEEee------CCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRRENN--AIL-----------------PNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~--~~~-----------------~~~~~~~~------~~~l~i~~~  133 (232)
                      +....+.+|+++.|.|.+.+.+  .+.+.|++++.  .+.                 ...++...      ..+|.|.++
T Consensus        33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  112 (282)
T 1qok_A           33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL  112 (282)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence            4556788999999999998765  57899998641  110                 01233222      147999999


Q ss_pred             CCCCCeEEEEEeEeCCCC----ceeeEEEEEEEec---------------cEEEeccceeeeeccCeEEEEEEeecCCCC
Q psy15206        134 TKEDRGAYYCVAQNGIGR----GARRKIEVKVEFA---------------PIVTVQSTRIGQALHHDMDLDCHIEAYPHP  194 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~----~~~~~~~l~v~~~---------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~  194 (232)
                      +.+|+|.|.|.+.+..+.    .......+.|..+               +.+...+....+..|++++|.|.+.+.+ +
T Consensus       113 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~  191 (282)
T 1qok_A          113 TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-S  191 (282)
T ss_dssp             CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-S
T ss_pred             ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-c
Confidence            999999999999987541    1112345666543               2345556677788999999999999998 8


Q ss_pred             eEEEee--CCEEec---------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        195 ILYWAK--DGEIVV---------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       195 ~~~W~~--~g~~~~---------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.|+|  +|..+.                     ....+.|.+.++..+|+|.|.|.|.
T Consensus       192 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  251 (282)
T 1qok_A          192 YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQR  251 (282)
T ss_dssp             CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEe
Confidence            999999  554321                     1134568888899999999999984

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.82  E-value=8.2e-19  Score=128.20  Aligned_cols=152  Identities=16%  Similarity=0.221  Sum_probs=104.8

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe-----eeC---------CCCcEEee----CCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN-----AIL---------PNGQTIFT----GSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~-----~~~---------~~~~~~~~----~~~l~i~~~~~~~~g~y  141 (232)
                      .+....+.+|+++.|.|.+.+.+.+.+.|++++.     .+.         ...++...    ..+|.|.+++.+|+|.|
T Consensus        18 ~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   97 (276)
T 3auv_A           18 SPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATY   97 (276)
T ss_dssp             ECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEE
Confidence            3556678899999999999988888999998642     110         11232221    12799999999999999


Q ss_pred             EEEeEeCCCCceeeEEEEEEEecc-------------E-EEeccceeeeeccCeEEEEEEeecCC--CCeEEEeeCC--E
Q psy15206        142 YCVAQNGIGRGARRKIEVKVEFAP-------------I-VTVQSTRIGQALHHDMDLDCHIEAYP--HPILYWAKDG--E  203 (232)
Q Consensus       142 ~C~~~~~~~~~~~~~~~l~v~~~p-------------~-~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~g--~  203 (232)
                      .|.+.+..+........+.|..+|             . ....+....+..|++++|.|.+.+.+  .+.+.|+|++  .
T Consensus        98 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~  177 (276)
T 3auv_A           98 YCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGK  177 (276)
T ss_dssp             EEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTC
T ss_pred             EEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCC
Confidence            999998644322223455554432             2 23345566788999999999999887  4789999963  1


Q ss_pred             E---ec--------------C-----------CCeEEEEEeccccCCceEEEEecC
Q psy15206        204 I---VV--------------N-----------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       204 ~---~~--------------~-----------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .   +.              .           ...+.|.+.++..+|+|.|+|.|.
T Consensus       178 ~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  233 (276)
T 3auv_A          178 CLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARF  233 (276)
T ss_dssp             CEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEE
Confidence            1   10              0           123467788889999999999874

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.81  E-value=2.1e-18  Score=124.71  Aligned_cols=151  Identities=16%  Similarity=0.252  Sum_probs=108.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee-------------CCCCcEEe------eCCeEEECCCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI-------------LPNGQTIF------TGSTLQIPRITKEDR  138 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~-------------~~~~~~~~------~~~~l~i~~~~~~~~  138 (232)
                      .+....+.+|+++.|.|.+.+.+.+.+.|++..  ...             ....++..      ...+|.|.+++.+|+
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   88 (256)
T 3tf7_C            9 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDS   88 (256)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGC
T ss_pred             cCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccC
Confidence            456678889999999999988888899999842  110             00112211      123699999999999


Q ss_pred             eEEEEEeEeCCCCc---eeeEEEEEEEe--------------------ccEEEeccceeeeeccCeEEEEEEeecCCCCe
Q psy15206        139 GAYYCVAQNGIGRG---ARRKIEVKVEF--------------------APIVTVQSTRIGQALHHDMDLDCHIEAYPHPI  195 (232)
Q Consensus       139 g~y~C~~~~~~~~~---~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  195 (232)
                      |.|.|.+.+..+..   ......|.|..                    +|.+...+....+..|++++|.|.+.+. .+.
T Consensus        89 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~  167 (256)
T 3tf7_C           89 AVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNY  167 (256)
T ss_dssp             SEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC-CSE
T ss_pred             EEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC-ceE
Confidence            99999999864321   12234555553                    5567777777788899999999999877 678


Q ss_pred             EEEeeCC--E---Eec----------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        196 LYWAKDG--E---IVV----------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       196 ~~W~~~g--~---~~~----------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.|+|+.  .   .+.                      ....+.|.+.++..+|+|.|+|.|.
T Consensus       168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  230 (256)
T 3tf7_C          168 MYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASS  230 (256)
T ss_dssp             EEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEec
Confidence            9999832  1   111                      2244578888999999999999983

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.81  E-value=1.5e-18  Score=123.25  Aligned_cols=160  Identities=23%  Similarity=0.419  Sum_probs=114.5

Q ss_pred             CcccCCCeeecCC---CcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee----------------------------e
Q psy15206          7 SQVDTPPVILNNS---TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------------------------G   55 (232)
Q Consensus         7 ~~~~~~P~i~~~~---~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~----------------------------~   55 (232)
                      .....+|.+...+   +....+.+|++++|.|.+.+.|.+.+.|++++..+                            |
T Consensus        10 ~~~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   89 (231)
T 3ojm_B           10 SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG   89 (231)
T ss_dssp             ---CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCE
T ss_pred             cCCccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCE
Confidence            3445678887651   26888999999999999999899999999954322                            4


Q ss_pred             eEEEEeeee------cCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEe----CCeeeCCCCcE
Q psy15206         56 RLHLAIPYT------SPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRR----ENNAILPNGQT  121 (232)
Q Consensus        56 ~~~~~~~~~------~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~----~~~~~~~~~~~  121 (232)
                      .|+|.....      ...|.|..    +|......+....+..|+.+.|.|.+.+.|.+.+.|++    ++..+......
T Consensus        90 ~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~  169 (231)
T 3ojm_B           90 NYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLP  169 (231)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCB
T ss_pred             EEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcc
Confidence            677765322      44455543    33444334566778899999999999999999999999    66655332211


Q ss_pred             -----------EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEE
Q psy15206        122 -----------IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIV  167 (232)
Q Consensus       122 -----------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  167 (232)
                                 ....+.|.|.++...|.|.|+|.+.|..|. ....+.+.|..+|..
T Consensus       170 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~  225 (231)
T 3ojm_B          170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ-ANQSAWLTVLPKQQA  225 (231)
T ss_dssp             CEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECCC--
T ss_pred             eEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccce-EeeEEEEEEecCCCC
Confidence                       112357999999999999999999998887 567778888776653

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.81  E-value=3.2e-19  Score=125.91  Aligned_cols=150  Identities=21%  Similarity=0.382  Sum_probs=101.8

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeC--CeeeC-----------------CCCcEEee------CCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRRE--NNAIL-----------------PNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~~-----------------~~~~~~~~------~~~l~i~~~  133 (232)
                      +....+.+|+++.|.|.+.+.+  .+.+.|+++  +..+.                 ...++...      ..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            3445677899999999998765  578999987  33220                 01232221      247999999


Q ss_pred             CCCCCeEEEEEeEeCCCC---ceeeEEEEEEEe----ccEEEeccceeeeeccCeEEEEEEeec-CCCC-eEEEeeCCEE
Q psy15206        134 TKEDRGAYYCVAQNGIGR---GARRKIEVKVEF----APIVTVQSTRIGQALHHDMDLDCHIEA-YPHP-ILYWAKDGEI  204 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~g~~  204 (232)
                      +.+|.|.|.|.+.+..+.   .......+.|..    +|.+...+....+..|+.+.|.|.+.| .|.| .|.|+++|..
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~  166 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  166 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCcc
Confidence            999999999999987532   112344566654    366655443345668999999999998 8988 9999999865


Q ss_pred             ec--------CCCeE----EEEEeccccCCceEEEEecC
Q psy15206        205 VV--------NDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       205 ~~--------~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.        ..+.+    .+.+. ....|.|.|+|.|.
T Consensus       167 ~~~~~~~~~~~~~~~~~~s~L~i~-~~~~d~g~Y~C~a~  204 (219)
T 1c1e_H          167 SGVHTFPAVLQSDLYTLSSSVTVP-SSPRPSETVTCNVA  204 (219)
T ss_dssp             TTEEECCCEESSSCEEEEEEEEEE-SSSTTTSCCEEEEE
T ss_pred             cceEecCCcccCCeEEEEEEEEEe-cccCCCCEEEEEEE
Confidence            31        11222    34443 33346699999974

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.81  E-value=6.2e-19  Score=127.66  Aligned_cols=152  Identities=15%  Similarity=0.228  Sum_probs=101.4

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee---C--C-------------CCcEE-----eeCCeEEECCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI---L--P-------------NGQTI-----FTGSTLQIPRIT  134 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~---~--~-------------~~~~~-----~~~~~l~i~~~~  134 (232)
                      .+....+.+|+++.|.|.+.+.+.+.+.|++..  ...   .  .             .....     ....+|.|.+++
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   87 (259)
T 3omz_A            8 RTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLI   87 (259)
T ss_dssp             ---CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCC
T ss_pred             CCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCC
Confidence            455678889999999999988888899999831  110   0  0             00111     123469999999


Q ss_pred             CCCCeEEEEEeEeCCCC--ceeeEEEEEEEe-----------------ccEEEeccceeeeeccCeEEEEEEeecC-CCC
Q psy15206        135 KEDRGAYYCVAQNGIGR--GARRKIEVKVEF-----------------APIVTVQSTRIGQALHHDMDLDCHIEAY-PHP  194 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~--~~~~~~~l~v~~-----------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~  194 (232)
                      .+|+|.|.|.+.+..+.  .......|.|..                 .|.+...+....+..|++++|.|.+.+. +.+
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~  167 (259)
T 3omz_A           88 ENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSY  167 (259)
T ss_dssp             GGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSC
T ss_pred             cccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCc
Confidence            99999999999986542  123344566654                 2456666777888899999999998775 778


Q ss_pred             eEEEeeCC--EE---e--------------------cCCCeEEEEEeccccCCceEEEEecC
Q psy15206        195 ILYWAKDG--EI---V--------------------VNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       195 ~~~W~~~g--~~---~--------------------~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.|+|++  ..   +                    .....+.|.+.++..+|+|.|.|.++
T Consensus       168 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  229 (259)
T 3omz_A          168 YIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALG  229 (259)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEE
T ss_pred             eEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEe
Confidence            89999843  11   1                    01223557888889999999999984

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.81  E-value=6.4e-19  Score=127.37  Aligned_cols=152  Identities=16%  Similarity=0.263  Sum_probs=107.9

Q ss_pred             CCCceEeecCCcEEEEeeeccC--CCCeEEEEeCC--eee-----------------CCCCcEEee------CCeEEECC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH--PIPTISWRREN--NAI-----------------LPNGQTIFT------GSTLQIPR  132 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~~-----------------~~~~~~~~~------~~~l~i~~  132 (232)
                      .+....+.+|+++.|.|.+.+.  +.+.+.|++..  ..+                 ....++...      ..+|.|.+
T Consensus        12 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   91 (256)
T 3juy_B           12 QSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   91 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECC
Confidence            4666788899999999999873  56689999742  110                 001223222      12599999


Q ss_pred             CCCCCCeEEEEEeEeC-----------CCCceeeEEEEEEEe---------------ccEEEeccceeeeeccCeEEEEE
Q psy15206        133 ITKEDRGAYYCVAQNG-----------IGRGARRKIEVKVEF---------------APIVTVQSTRIGQALHHDMDLDC  186 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~-----------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C  186 (232)
                      ++.+|+|.|.|.+.+.           ..........+.|..               ++.+...+....+..|++++|.|
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C  171 (256)
T 3juy_B           92 LRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSC  171 (256)
T ss_dssp             CCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEE
T ss_pred             CCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEE
Confidence            9999999999999886           111123344566654               34566667788889999999999


Q ss_pred             EeecCCC-CeEEEeeC--CE--Ee-------------------cCCCeEEEEEeccccCCceEEEEecC
Q psy15206        187 HIEAYPH-PILYWAKD--GE--IV-------------------VNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       187 ~~~~~p~-~~~~W~~~--g~--~~-------------------~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.+.+. +.+.|+|+  +.  ..                   .....+.|.+.++..+|+|.|.|.|.
T Consensus       172 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  240 (256)
T 3juy_B          172 RSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVY  240 (256)
T ss_dssp             EESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred             EECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEe
Confidence            9998876 78999983  21  11                   01234568888999999999999985

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.81  E-value=1.1e-18  Score=126.16  Aligned_cols=151  Identities=20%  Similarity=0.281  Sum_probs=105.4

Q ss_pred             CCceEeecCCcEEEEeeeccC--CCCeEEEEeCC--ee--eC--------------CCCcEEee------CCeEEECCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGH--PIPTISWRREN--NA--IL--------------PNGQTIFT------GSTLQIPRIT  134 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~--~~--------------~~~~~~~~------~~~l~i~~~~  134 (232)
                      +....+.+|+++.|.|.+.+.  +.+.+.|++..  ..  ..              ...++...      ..+|.|.+++
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   94 (257)
T 3gkz_A           15 SGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVS   94 (257)
T ss_dssp             ECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCC
Confidence            444567899999999999874  46789999842  11  00              11122221      1269999999


Q ss_pred             CCCCeEEEEEeEeCCCC---ceeeEEEEEEEec--------------cEEEeccceeeeeccCeEEEEEEeecCCCC-eE
Q psy15206        135 KEDRGAYYCVAQNGIGR---GARRKIEVKVEFA--------------PIVTVQSTRIGQALHHDMDLDCHIEAYPHP-IL  196 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~---~~~~~~~l~v~~~--------------p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~  196 (232)
                      .+|+|.|.|.+.+..+.   .......+.|..+              +.+...+....+..|++++|.|.+.+.+.+ .+
T Consensus        95 ~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v  174 (257)
T 3gkz_A           95 SEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHL  174 (257)
T ss_dssp             GGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCGGGE
T ss_pred             hhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccceEE
Confidence            99999999999986211   1223345666543              556666777888899999999999998887 89


Q ss_pred             EEeeC--CEEec---------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        197 YWAKD--GEIVV---------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       197 ~W~~~--g~~~~---------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|+|+  +..+.                     ....+.|.+.++..+|+|.|.|.|.
T Consensus       175 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~  232 (257)
T 3gkz_A          175 YWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQW  232 (257)
T ss_dssp             EEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEc
Confidence            99983  22111                     1134568888999999999999985

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.81  E-value=6.5e-19  Score=123.85  Aligned_cols=149  Identities=17%  Similarity=0.302  Sum_probs=103.5

Q ss_pred             CCCceEeecCCcEEEEeeeccC-------CCCeEEEEeCCeee-----C------------CCCcEEee------CCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH-------PIPTISWRRENNAI-----L------------PNGQTIFT------GSTLQ  129 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-------~~~~~~W~~~~~~~-----~------------~~~~~~~~------~~~l~  129 (232)
                      .+....+.+|+.+.|.|.+.+.       +.+.+.|++++...     .            ...++...      +.+|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            3556778899999999998653       45679999986521     0            11233321      23799


Q ss_pred             ECCCCCCCCeEEEEEeEeCCCCc---eeeEEEEEEEe---ccEEEeccceeeeeccCeEEEEEEeecC----CCCeEEEe
Q psy15206        130 IPRITKEDRGAYYCVAQNGIGRG---ARRKIEVKVEF---APIVTVQSTRIGQALHHDMDLDCHIEAY----PHPILYWA  199 (232)
Q Consensus       130 i~~~~~~~~g~y~C~~~~~~~~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~~~~W~  199 (232)
                      |.+++.+|.|.|.|.+.+..+..   ....+.|.|..   +|.+.. +.  .+.+|+.++|.|.+.+.    |.|.+.|+
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~  162 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFSWT  162 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEEEE
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEEEe
Confidence            99999999999999999865221   12356677765   344433 22  25689999999999774    78899999


Q ss_pred             eCCEEecC---CCeEEEEEeccccCCceEEEEecC
Q psy15206        200 KDGEIVVN---DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       200 ~~g~~~~~---~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +++..+..   ...-.+.+..+...|.|.|+|.|.
T Consensus       163 ~~~~~~~~~~~~~~~~L~i~~~~~~~~g~Y~C~a~  197 (214)
T 2zg1_A          163 GNALSPLDPETTRSSELTLTPRPEDHGTNLTCQMK  197 (214)
T ss_dssp             SSTTSSSCSSCCCSSEEEECCCTTCCSCEEEEEEE
T ss_pred             CCCCccCCCCceeEEEEEEecccHHcCcEEEEEEE
Confidence            99854321   223456666777789999999974

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.81  E-value=8e-19  Score=127.57  Aligned_cols=147  Identities=16%  Similarity=0.270  Sum_probs=104.2

Q ss_pred             CCCceEeecCCcEEEEeeec---cCCCCeEEEEeCCeeeCCC------------------CcEEee------CCeEEECC
Q psy15206         80 SPQLSVAKEGQSVQLECHAE---GHPIPTISWRRENNAILPN------------------GQTIFT------GSTLQIPR  132 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~---~~~~~~~~W~~~~~~~~~~------------------~~~~~~------~~~l~i~~  132 (232)
                      .+....+.+|+.+.|.|.+.   +.+.+.+.|++.+......                  .+....      +.+|.|.+
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   90 (268)
T 3mj6_A           11 SSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQD   90 (268)
T ss_dssp             -CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECS
T ss_pred             CCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECC
Confidence            45567788999999999987   5666789999965432111                  222221      26799999


Q ss_pred             CCCCCCeEEEEEeEeCCCCc-eeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEe---ecCCCCeEEEeeC-CEE---
Q psy15206        133 ITKEDRGAYYCVAQNGIGRG-ARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHI---EAYPHPILYWAKD-GEI---  204 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~~~W~~~-g~~---  204 (232)
                      ++.+|.|.|+|.+.+..+.. ....+.+.|..     ..+....+..|+++.|.|.+   .+.|.+.+.|+++ +..   
T Consensus        91 v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~-----~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~  165 (268)
T 3mj6_A           91 VQKADEGIYTCEIRLKNESMVMKKPVELWVLP-----EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEE  165 (268)
T ss_dssp             CCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC-----CCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSC
T ss_pred             CCHhHCEEEEEEEEecCCcceEEEEEEEEEec-----cCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcc
Confidence            99999999999999865432 33444555431     23446678899999999999   6778899999993 211   


Q ss_pred             ---e-----------------------c---CCCeEEEEEeccccCCceEEEEecC
Q psy15206        205 ---V-----------------------V---NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       205 ---~-----------------------~---~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                         +                       .   ......|.+.++..+|+|.|+|.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~  221 (268)
T 3mj6_A          166 ETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIY  221 (268)
T ss_dssp             EEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEE
Confidence               0                       0   0234567788889999999999873

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.81  E-value=2.6e-18  Score=124.10  Aligned_cols=151  Identities=16%  Similarity=0.204  Sum_probs=102.2

Q ss_pred             CCceEeecCCcEEEEeeeccC--CCCeEEEEeCC--eeeC------------CCCcEEee----CCeEEECCCCCCCCeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGH--PIPTISWRREN--NAIL------------PNGQTIFT----GSTLQIPRITKEDRGA  140 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~  140 (232)
                      +....+.+|+++.|.|.+.+.  +.+.+.|++..  ..+.            ...++...    ..+|.|.+++.+|+|.
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   88 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD   88 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence            345678899999999999876  67789999853  1110            11222221    2269999999999999


Q ss_pred             EEEEeEeCCCC--ceeeEEEEEEEeccE--------------------EEeccceeeeeccCeEEEEEEeecCC--CCeE
Q psy15206        141 YYCVAQNGIGR--GARRKIEVKVEFAPI--------------------VTVQSTRIGQALHHDMDLDCHIEAYP--HPIL  196 (232)
Q Consensus       141 y~C~~~~~~~~--~~~~~~~l~v~~~p~--------------------~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~  196 (232)
                      |.|.+.+..+.  .......|.|..++.                    ....+....+..|++++|.|.+.+.+  .+.+
T Consensus        89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  168 (256)
T 3ux9_B           89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAM  168 (256)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred             EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccEE
Confidence            99999985432  122334566654431                    22223344578899999999999877  6789


Q ss_pred             EEeeC--CEEe------c----------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        197 YWAKD--GEIV------V----------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       197 ~W~~~--g~~~------~----------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|+|+  +..+      .                      ....+.|.+.++..+|+|.|.|.|.
T Consensus       169 ~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  233 (256)
T 3ux9_B          169 SWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARY  233 (256)
T ss_dssp             EEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEE
Confidence            99986  3211      0                      1334568888899999999999874

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.81  E-value=1.5e-18  Score=122.60  Aligned_cols=149  Identities=15%  Similarity=0.213  Sum_probs=105.8

Q ss_pred             ceEeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCC----------------CCcE-----------EeeCCeEEECC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIP---TISWRRENNAILP----------------NGQT-----------IFTGSTLQIPR  132 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~----------------~~~~-----------~~~~~~l~i~~  132 (232)
                      .+....|+++.|.|.+.+.+.+   .+.|++++.....                ..+.           ...+.+|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            3566789999999999886665   3889997654310                0000           11235799999


Q ss_pred             CCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEec-----
Q psy15206        133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVV-----  206 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~-----  206 (232)
                      ++.+|.|.|.|.+.+..+........+.+..+|.....+.......++.+.+.|.+ .+.|++.+.|++++..+.     
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~  169 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQE  169 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEE
T ss_pred             CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcce
Confidence            99999999999999876654555556666677776665555556677777788775 567888999999865432     


Q ss_pred             ---CCCeE----EEEEeccccCCceEEEEecC
Q psy15206        207 ---NDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 ---~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                         .++.+    .|.+..+...|+|+|+|.|.
T Consensus       170 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~  201 (225)
T 4fmk_A          170 PGIQAGTVTIISRYSLVPVGRADGVKVTCRVE  201 (225)
T ss_dssp             ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEE
T ss_pred             EEecCCCEEEEEEEEEeeCCHHHCCEEEEEEE
Confidence               22222    46777788899999999984

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.80  E-value=1.5e-18  Score=124.80  Aligned_cols=151  Identities=15%  Similarity=0.226  Sum_probs=102.4

Q ss_pred             CCceEeecCCcEEEEeeeccCC-----CCeEEEEeCC--eee---C---------CCCcEEee----CCeEEECCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP-----IPTISWRREN--NAI---L---------PNGQTIFT----GSTLQIPRITKED  137 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~-----~~~~~W~~~~--~~~---~---------~~~~~~~~----~~~l~i~~~~~~~  137 (232)
                      +....+.+|+++.|.|.+.+.+     .+.+.|++..  ..+   .         ...++...    ..+|.|.+++.+|
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   87 (247)
T 1svz_A            8 PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAED   87 (247)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHH
Confidence            4556788999999999998877     5789999853  111   0         01232221    2379999999999


Q ss_pred             CeEEEEEeEeCCCCceeeEEEEEEEecc-------------EEEeccceeeeeccCeEEEEEEeecCC--CCeEEEeeCC
Q psy15206        138 RGAYYCVAQNGIGRGARRKIEVKVEFAP-------------IVTVQSTRIGQALHHDMDLDCHIEAYP--HPILYWAKDG  202 (232)
Q Consensus       138 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p-------------~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~g  202 (232)
                      +|.|.|.+.+..+........|.|..++             .....+....+..|++++|.|.+.+.+  .+.+.|+|++
T Consensus        88 ~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~  167 (247)
T 1svz_A           88 LGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQA  167 (247)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             CEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeC
Confidence            9999999988644322233456665432             223333344588899999999999885  4589999952


Q ss_pred             --EE---e---c----------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        203 --EI---V---V----------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       203 --~~---~---~----------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                        ..   +   .                      ....+.|.+.++..+|+|.|.|.|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  226 (247)
T 1svz_A          168 PGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRD  226 (247)
T ss_dssp             TTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEe
Confidence              11   1   0                      1123567788889999999999874

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.80  E-value=2e-18  Score=128.28  Aligned_cols=156  Identities=18%  Similarity=0.301  Sum_probs=117.4

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEec-CCCCCeEEEEeCcEee------------------------------e
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAE-GHPIPTISWRRNFKRL------------------------------G   55 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~-~~p~~~~~W~~~~~~~------------------------------~   55 (232)
                      +.+..+|.+... +....+.+|+.+.+.|.+. +.|.+.+.|++++..+                              +
T Consensus       112 l~v~~~P~~~~~-~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g  190 (313)
T 4fqp_A          112 LRVLAKPQNTAE-VQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGK  190 (313)
T ss_dssp             ECCBBCCEEEEE-ECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTC
T ss_pred             eeeccCCcceec-ccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCe
Confidence            456678888777 6677788899999999876 6889999999953221                              3


Q ss_pred             eEEEEeeee--------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCcEEeeCC
Q psy15206         56 RLHLAIPYT--------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTGS  126 (232)
Q Consensus        56 ~~~~~~~~~--------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~  126 (232)
                      .|+|.....        .+.|.|..+|.+.........+..|+.+.|.|.+.|.|.| .+.|++++..+..  .....++
T Consensus       191 ~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~--~~~~~~~  268 (313)
T 4fqp_A          191 NVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP--FAVAQGA  268 (313)
T ss_dssp             EEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCT--TEEEETT
T ss_pred             eEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCC--ceEEeCC
Confidence            566655321        4456666667654334444556678999999999999988 5999999987643  3345567


Q ss_pred             eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccE
Q psy15206        127 TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPI  166 (232)
Q Consensus       127 ~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  166 (232)
                      .|.|.++...|+|.|+|.+.|..|. ....+.|.|..+|.
T Consensus       269 ~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~PP  307 (313)
T 4fqp_A          269 QLLIRPVDKPINTTLICNVTNALGA-RQAELTVQVKEGPP  307 (313)
T ss_dssp             EEEECCCSSCCEEEEEEEEECSSCE-EEEEEEEEEECCC-
T ss_pred             EEEECcCChhhCEEEEEEEEeCCCc-EEEEEEEEEEeCCC
Confidence            8999999999999999999999887 56778888876553

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.80  E-value=3.5e-18  Score=116.84  Aligned_cols=137  Identities=22%  Similarity=0.290  Sum_probs=97.4

Q ss_pred             CceEeecCCcEEEEeeecc-CCCCeEEEEeC-CeeeC------------CC--CcEEe--eCCeEEECCCCCCCCeEEEE
Q psy15206         82 QLSVAKEGQSVQLECHAEG-HPIPTISWRRE-NNAIL------------PN--GQTIF--TGSTLQIPRITKEDRGAYYC  143 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~-~~~~~------------~~--~~~~~--~~~~l~i~~~~~~~~g~y~C  143 (232)
                      ....+.+|+++.|.|...+ .+.+.+.|++. +..+.            ..  .+...  .+++|.|.+++.+|.|.|.|
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C   86 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM   86 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence            3467789999999999854 33578999994 32211            11  23333  35689999999999999999


Q ss_pred             EeEeCCCCceeeEEEEEEEec---cEEEeccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCCCeEEEEEeccc
Q psy15206        144 VAQNGIGRGARRKIEVKVEFA---PIVTVQSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVNDEYHSISNFGTS  219 (232)
Q Consensus       144 ~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~  219 (232)
                      .+.+..  .....+.|.|..+   |.+..        .+..+.|.|.+ .| |.+.+.|+++|..+.......+.+..  
T Consensus        87 ~v~~~~--~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~~~~~l~~~~--  153 (180)
T 2dru_A           87 RMLHET--EDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEG-TDVELKLYQGKEHLRSLRQKTMSYQW--  153 (180)
T ss_dssp             EEESSS--EEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSC-TTCEEEEEETTEEEEEESSSEEEEEC--
T ss_pred             EEEcCC--eEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCC-CCCEEEEEECCeECcCCCCCEEEEEE--
Confidence            997754  3556677777653   23222        34669999999 66 89999999999887633334444432  


Q ss_pred             cCCceEEEEecC
Q psy15206        220 EGTTGSLQCKVP  231 (232)
Q Consensus       220 ~~d~g~Y~C~~~  231 (232)
                      ..|+|.|+|.|.
T Consensus       154 ~~d~g~Y~C~a~  165 (180)
T 2dru_A          154 TNLRAPFKCKAV  165 (180)
T ss_dssp             SCCSSCEEEEEE
T ss_pred             hhcCccEEEEEe
Confidence            689999999974

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.80  E-value=1.4e-19  Score=129.08  Aligned_cols=151  Identities=20%  Similarity=0.254  Sum_probs=101.8

Q ss_pred             CCceEeecCCcEEEEeeeccCC-CC-eEEEEeCCe--ee------------CCCCcEEee----CCeEEECCCCCCCCeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP-IP-TISWRRENN--AI------------LPNGQTIFT----GSTLQIPRITKEDRGA  140 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~-~~-~~~W~~~~~--~~------------~~~~~~~~~----~~~l~i~~~~~~~~g~  140 (232)
                      +....+.+|+.+.|.|.+.+.+ .+ .+.|+++..  .+            ....++...    ..+|.|.+++.+|+|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            4556778899999999998754 34 699998632  11            011233221    2379999999999999


Q ss_pred             EEEEeEeCCCC--ceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecCC----
Q psy15206        141 YYCVAQNGIGR--GARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVND----  208 (232)
Q Consensus       141 y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~----  208 (232)
                      |.|.+.+..+.  .......+.|.    .+|.+...+.......|+.++|.|.+.|.+++  .+.|+|||..+...    
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  185 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETT  185 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCcccc
Confidence            99999987652  11122344442    34555443333333468899999999986443  89999999876432    


Q ss_pred             -------Ce----EEEEEeccccCCceEEEEecC
Q psy15206        209 -------EY----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 -------~~----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                             ..    ..+.+......|+|.|+|.|.
T Consensus       186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  219 (234)
T 2j6e_L          186 KPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVT  219 (234)
T ss_dssp             CCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEE
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCeEEEEEE
Confidence                   11    245666777789999999984

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.80  E-value=1.2e-18  Score=127.96  Aligned_cols=150  Identities=17%  Similarity=0.216  Sum_probs=110.1

Q ss_pred             EecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206         76 ILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARR  155 (232)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  155 (232)
                      .+...+....+.+|+.+.|.|.+.+    .+.|++++..... .........|.|.++...|.|.|+|.+.+..+. ...
T Consensus         6 ~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~~~   79 (289)
T 3ejj_X            6 VIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWT-LDPESPGSTLTTRNATFKNTGTYRCTELEDPMA-GST   79 (289)
T ss_dssp             EEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSE-ECCCSSCCEEEESSCCGGGCEEEEEECCC------CE
T ss_pred             EecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEE-EeccCCccEEEEeeeccccCEEEEEEEeccCCc-cee
Confidence            3344566678889999999999876    5999987643211 011223468999999999999999999887665 566


Q ss_pred             EEEEEEEeccE-EEeccceeeeeccCeEEEEEEeecCCCCe-EEEee-CCEEecCCCeE------EEEEeccccCCceEE
Q psy15206        156 KIEVKVEFAPI-VTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAK-DGEIVVNDEYH------SISNFGTSEGTTGSL  226 (232)
Q Consensus       156 ~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~-~g~~~~~~~~~------~~~~~~~~~~d~g~Y  226 (232)
                      .+.+.|..+|. +...+....+..|+.+.|.|.+.+.+.+. +.|++ ++..+....++      .+.+.++...|+|.|
T Consensus        80 ~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  159 (289)
T 3ejj_X           80 TIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTY  159 (289)
T ss_dssp             EEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEE
T ss_pred             EEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEE
Confidence            77888887665 45566777888999999999999877765 99986 56665443332      466777888999999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      +|.+.
T Consensus       160 ~C~a~  164 (289)
T 3ejj_X          160 VCKTM  164 (289)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99974

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.80  E-value=5.2e-19  Score=133.38  Aligned_cols=152  Identities=18%  Similarity=0.245  Sum_probs=114.7

Q ss_pred             CcccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe-------------------------ee-eEEEE
Q psy15206          7 SQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR-------------------------LG-RLHLA   60 (232)
Q Consensus         7 ~~~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~-------------------------~~-~~~~~   60 (232)
                      +.+..+|.|... +.+..+.+|++++|.|.+.+.|.+.+.|++++..                         .| .|+|.
T Consensus       153 ~~~c~~P~i~~~-~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~  231 (347)
T 2ifg_A          153 NASCGVPTLKVQ-VPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCW  231 (347)
T ss_dssp             CTTCCCCEEEEE-CCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEEC
T ss_pred             cccCCCCceecc-CCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEE
Confidence            345568999988 7888999999999999999999999999995422                         14 67776


Q ss_pred             eeee------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-----------
Q psy15206         61 IPYT------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----------  123 (232)
Q Consensus        61 ~~~~------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-----------  123 (232)
                      ....      .+.|.|..+|.+..     .....|+.+.|.|.+.|.|.|.+.|+++|..+........           
T Consensus       232 a~n~~g~~~~~~~l~V~~~P~i~~-----~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~  306 (347)
T 2ifg_A          232 AENDVGRAEVSVQVNVSFPASVQL-----HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV  306 (347)
T ss_dssp             CEETTEECCEEECCCCBEEEEEEE-----CCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCC
T ss_pred             EEcCCCCEEEEEEEEEcCCCeeee-----ccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcc
Confidence            5222      45566665555411     1234689999999999999999999999988764433221           


Q ss_pred             eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEecc
Q psy15206        124 TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       124 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  165 (232)
                      ..+.|.|.++..+|.|.|+|.+.|..|. ....+.+.|..+|
T Consensus       307 ~~~~L~I~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~P  347 (347)
T 2ifg_A          307 RHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNP  347 (347)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEECSCCCC
T ss_pred             cceEEEECCCCcccCceEEEEEecCCCc-eeeEEEEEecCCC
Confidence            1446999999999999999999999886 5566666665544

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.79  E-value=2.7e-18  Score=121.34  Aligned_cols=149  Identities=21%  Similarity=0.327  Sum_probs=102.4

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeCC--ee---eC--------------CCCcEEee------CCeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NA---IL--------------PNGQTIFT------GSTLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~~--------------~~~~~~~~------~~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.+.+  .+.+.|++..  ..   +.              ...++...      ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   87 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVR   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCC
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCC
Confidence            346777899999999998755  5679999853  11   10              11233322      1379999999


Q ss_pred             CCCCeEEEEEeEeCCCC--ceeeEEEEEEEe----ccEEEeccceeeeeccCeEEEEEEeecC-CC--CeEEEeeCCEEe
Q psy15206        135 KEDRGAYYCVAQNGIGR--GARRKIEVKVEF----APIVTVQSTRIGQALHHDMDLDCHIEAY-PH--PILYWAKDGEIV  205 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--~~~~W~~~g~~~  205 (232)
                      .+|+|.|.|.+.+..+.  .......|.|..    +|.+...+ ...+..|+.++|.|.+.+. |.  +.+.|+++|..+
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~  166 (220)
T 2fbj_H           88 SEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDI  166 (220)
T ss_dssp             GGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSC
T ss_pred             hhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEec
Confidence            99999999999986432  112234666653    45665544 3345689999999999887 66  689999998643


Q ss_pred             c---------CCCeEE----EEEeccccCCceEEEEecC
Q psy15206        206 V---------NDEYHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       206 ~---------~~~~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .         .++.|.    +.+......|.|.|+|.|.
T Consensus       167 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~  205 (220)
T 2fbj_H          167 TTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQ  205 (220)
T ss_dssp             EEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEE
T ss_pred             ceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEE
Confidence            1         223443    5555666678999999874

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.79  E-value=6.5e-19  Score=124.54  Aligned_cols=145  Identities=18%  Similarity=0.351  Sum_probs=99.0

Q ss_pred             eEeecCCcEEEEeeeccCCC-----CeEEEEeCCeee-------------CCCCcEEee-------CCeEEECCCCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI-----PTISWRRENNAI-------------LPNGQTIFT-------GSTLQIPRITKEDR  138 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~-----~~~~W~~~~~~~-------------~~~~~~~~~-------~~~l~i~~~~~~~~  138 (232)
                      ..+.+|+.+.|.|.+.+.+.     +.+.|++++...             ....+....       +.+|.|.+++.+|.
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            45668999999999887653     579999986432             111222221       45799999999999


Q ss_pred             eEEEEEeEeCCCCceeeEEEEEEEec---cEEEeccceeeeeccCeEEEEEEe-ecCCCCeEEEeeC-CEEecC------
Q psy15206        139 GAYYCVAQNGIGRGARRKIEVKVEFA---PIVTVQSTRIGQALHHDMDLDCHI-EAYPHPILYWAKD-GEIVVN------  207 (232)
Q Consensus       139 g~y~C~~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~-g~~~~~------  207 (232)
                      |.|+|.+.+...  ....+.+.|..+   |.+...+ ...+..|+.+.|.|.+ .+.|.+.+.|+++ +..+..      
T Consensus        85 G~Y~C~~~~~~~--~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~  161 (222)
T 4i0k_A           85 GSYTCFVSIQDF--DSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQ  161 (222)
T ss_dssp             SCEEEEEEECCC--CCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEE
T ss_pred             EEEEEEEEeCCC--ceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeE
Confidence            999999997532  233445555443   5555444 3356789999999999 8999999999994 433321      


Q ss_pred             ----CCe-EEEEEeccccCCceEEEEecC
Q psy15206        208 ----DEY-HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       208 ----~~~-~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                          +.. ..+.+.++..+|+|.|+|.|.
T Consensus       162 ~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~  190 (222)
T 4i0k_A          162 MANERGLFDVHSVLRVVLGANGTYSCLVR  190 (222)
T ss_dssp             EECTTSCEEEEEEEEEECCTTCEEEEEEE
T ss_pred             EcCCCCeEEEEEEEEEEeCCCCEEEEEEE
Confidence                122 235677788899999999973

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.79  E-value=9.1e-18  Score=120.48  Aligned_cols=150  Identities=21%  Similarity=0.284  Sum_probs=101.0

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeC--------------CeeeCC----CCcEEee-----CCeEEECCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE--------------NNAILP----NGQTIFT-----GSTLQIPRITKED  137 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--------------~~~~~~----~~~~~~~-----~~~l~i~~~~~~~  137 (232)
                      +....+.+|+.+.|.| ..+.+.+.+.|++.              +.....    ..++...     ..+|.|.+++.+|
T Consensus         9 p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D   87 (245)
T 4ei6_B            9 PSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALED   87 (245)
T ss_dssp             CSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGG
T ss_pred             CceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhH
Confidence            4556788999999999 65677789999982              111110    0333322     2279999999999


Q ss_pred             CeEEEEEeEeCC---CCceeeEEEEEEE------eccEEEec-cceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCEEe
Q psy15206        138 RGAYYCVAQNGI---GRGARRKIEVKVE------FAPIVTVQ-STRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEIV  205 (232)
Q Consensus       138 ~g~y~C~~~~~~---~~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~~  205 (232)
                      .|.|.|.+.+..   .........+.|.      .+|.+... +....+..|+.++|.|.+.|. |.+ .+.|+++|..+
T Consensus        88 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~~~g~~l  167 (245)
T 4ei6_B           88 SAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  167 (245)
T ss_dssp             CEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             CEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEEECCEEC
Confidence            999999998532   1112234456665      35655443 344445569999999999884 444 79999999887


Q ss_pred             cC----------------CCeEE----EEEeccccCC-ceEEEEecC
Q psy15206        206 VN----------------DEYHS----ISNFGTSEGT-TGSLQCKVP  231 (232)
Q Consensus       206 ~~----------------~~~~~----~~~~~~~~~d-~g~Y~C~~~  231 (232)
                      ..                +..+.    +.+......| .|.|+|.|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~  214 (245)
T 4ei6_B          168 HSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ  214 (245)
T ss_dssp             CTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEE
T ss_pred             CCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEE
Confidence            53                33343    4444555566 899999974

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.79  E-value=5.7e-18  Score=117.69  Aligned_cols=148  Identities=26%  Similarity=0.345  Sum_probs=108.3

Q ss_pred             CeeecCCCcceEeecCCeEEEEEE-ecCCCC-CeEEEEeCcEe---------------------------eeeEEEEeee
Q psy15206         13 PVILNNSTQLSVAKEGQSVQLECH-AEGHPI-PTISWRRNFKR---------------------------LGRLHLAIPY   63 (232)
Q Consensus        13 P~i~~~~~~~~~~~~G~~v~l~C~-~~~~p~-~~~~W~~~~~~---------------------------~~~~~~~~~~   63 (232)
                      |.+...++.++.+.+|++++|.|. +.+.|. +.+.|++++..                           .|.|.|....
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~   87 (201)
T 3s97_C            8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSS   87 (201)
T ss_dssp             CCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEe
Confidence            444444478889999999999999 888888 99999984321                           2478887644


Q ss_pred             e---------cCceeec-------CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCe
Q psy15206         64 T---------SPEAQVD-------TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGST  127 (232)
Q Consensus        64 ~---------~~~l~v~-------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~  127 (232)
                      .         ...+.+.       .+|.+.. ......+..|+.+.|.|.+.+.|.+.+.|++++..+..........+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~  166 (201)
T 3s97_C           88 PSITKSVFSKFIPLIPIPERTTKPYPADIVV-QFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAV  166 (201)
T ss_dssp             GGGTEEEECCCEEEEEECCSSCCCEEEEEEE-ECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTE
T ss_pred             cCCCcchhhcccceeeccccccCCCCCceEe-cCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCE
Confidence            2         1111111       2233332 233667888999999999999999999999999876655444455678


Q ss_pred             EEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       128 l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      |.|.++..+|.|.|+|.+.|..|. ....+.+.|.
T Consensus       167 L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~  200 (201)
T 3s97_C          167 LKIFNIQLEDEGIYECEAENIRGK-DKHQARIYVQ  200 (201)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEccCChhhCEEEEEEEEecCCc-eeeeEEEEEe
Confidence            999999999999999999998876 4555566553

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.79  E-value=4.3e-20  Score=137.35  Aligned_cols=149  Identities=21%  Similarity=0.305  Sum_probs=110.9

Q ss_pred             CceEeecCCcEEEEeeeccCC-CCeEEEEeCCeeeC----CCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAIL----PNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK  156 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~~----~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  156 (232)
                      ....+.+|+.+.|.|.+.+.+ .+.+.|++++....    ...+....++.|.|.++..+|.|.|+|.+.+..+. ....
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~   91 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYC-LRIK   91 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCC-CCEE
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceE-EEEE
Confidence            356788999999999998877 67899999986432    12344455678999999999999999999987665 3333


Q ss_pred             EEEEEE-eccEEEecc---ceeeeeccCeEEEEEEe------ecCCCCeEEEeeCCEEecCCC------eEEEEEecccc
Q psy15206        157 IEVKVE-FAPIVTVQS---TRIGQALHHDMDLDCHI------EAYPHPILYWAKDGEIVVNDE------YHSISNFGTSE  220 (232)
Q Consensus       157 ~~l~v~-~~p~~~~~~---~~~~~~~g~~~~l~C~~------~~~p~~~~~W~~~g~~~~~~~------~~~~~~~~~~~  220 (232)
                      +.+.+. .+|.+...+   ....+..|+++.|.|.+      .|.|.+.+.|+|+|..+....      ...|.+.++..
T Consensus        92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~  171 (315)
T 1itb_B           92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAE  171 (315)
T ss_dssp             CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCG
T ss_pred             EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEecee
Confidence            333332 334332221   23457789999999998      899999999999998874321      22667778888


Q ss_pred             CCceEEEEecC
Q psy15206        221 GTTGSLQCKVP  231 (232)
Q Consensus       221 ~d~g~Y~C~~~  231 (232)
                      .|+|.|+|.|.
T Consensus       172 ~d~G~Y~C~a~  182 (315)
T 1itb_B          172 KHRGNYTCHAS  182 (315)
T ss_dssp             GGCEEEEEEEE
T ss_pred             hhCcEEEEEEE
Confidence            99999999974

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.79  E-value=1.1e-17  Score=121.45  Aligned_cols=152  Identities=14%  Similarity=0.227  Sum_probs=104.9

Q ss_pred             CCCceEeecCCcEEEEeeeccCC------CCeEEEEeCC--eee---C---------CCCcEEee----CCeEEECCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP------IPTISWRREN--NAI---L---------PNGQTIFT----GSTLQIPRITK  135 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~------~~~~~W~~~~--~~~---~---------~~~~~~~~----~~~l~i~~~~~  135 (232)
                      .+....+.+|+++.|.|.+.+.+      .+.+.|++..  ..+   .         ...++...    ..+|.|.+++.
T Consensus        11 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~   90 (264)
T 2gjj_A           11 TPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKA   90 (264)
T ss_dssp             ECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             cCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCH
Confidence            45567788999999999998876      5679999852  211   0         12233221    23799999999


Q ss_pred             CCCeEEEEEeEeCCCCceeeEEEEEEEecc------------------EE-EeccceeeeeccCeEEEEEEeecCCC--C
Q psy15206        136 EDRGAYYCVAQNGIGRGARRKIEVKVEFAP------------------IV-TVQSTRIGQALHHDMDLDCHIEAYPH--P  194 (232)
Q Consensus       136 ~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p------------------~~-~~~~~~~~~~~g~~~~l~C~~~~~p~--~  194 (232)
                      +|+|.|.|.+.+..+........|.|..+|                  .+ ...+....+..|++++|.|.+.+.+.  +
T Consensus        91 ~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  170 (264)
T 2gjj_A           91 EDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSFTGY  170 (264)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGS
T ss_pred             HHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCccCCe
Confidence            999999999987643222233466666542                  22 22233346788999999999998874  6


Q ss_pred             eEEEeeCC--E---Eec-------------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        195 ILYWAKDG--E---IVV-------------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       195 ~~~W~~~g--~---~~~-------------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.|+|+.  .   .+.                         ....+.|.+.++..+|+|.|.|.+.
T Consensus       171 ~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  237 (264)
T 2gjj_A          171 FINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRS  237 (264)
T ss_dssp             EEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEe
Confidence            89999862  1   111                         1124577888889999999999874

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.78  E-value=1e-17  Score=121.88  Aligned_cols=151  Identities=21%  Similarity=0.269  Sum_probs=101.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeC--Ceee------------CC---C-CcEEee-----CCeEEECCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAI------------LP---N-GQTIFT-----GSTLQIPRITKE  136 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~------------~~---~-~~~~~~-----~~~l~i~~~~~~  136 (232)
                      .+....+.+|+++.|.|.+. .+.+.+.|++.  +...            ..   . .++...     +.+|.|.+++.+
T Consensus        32 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~  110 (268)
T 3pl6_D           32 TPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERG  110 (268)
T ss_dssp             CCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGG
T ss_pred             CCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcc
Confidence            45557788999999999986 56678999982  2111            00   0 233222     347999999999


Q ss_pred             CCeEEEEEeEeCC-CCceeeEEEEEEEe------ccEEEec-cceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        137 DRGAYYCVAQNGI-GRGARRKIEVKVEF------APIVTVQ-STRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       137 ~~g~y~C~~~~~~-~~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      |+|.|.|.+.+.. .........+.|..      +|.+... +....+..|+.++|.|.+.|.+++  .+.|+++|..+.
T Consensus       111 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~~g~~l~  190 (268)
T 3pl6_D          111 DSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  190 (268)
T ss_dssp             GCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEESSSEEC
T ss_pred             cCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEECCEECC
Confidence            9999999998741 11123344566654      5665443 333445569999999999986654  899999998774


Q ss_pred             C----------------CCeEEE----EEeccccCC-ceEEEEecC
Q psy15206        207 N----------------DEYHSI----SNFGTSEGT-TGSLQCKVP  231 (232)
Q Consensus       207 ~----------------~~~~~~----~~~~~~~~d-~g~Y~C~~~  231 (232)
                      .                ++.+.+    .+......| .|.|+|.|.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~  236 (268)
T 3pl6_D          191 SGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQ  236 (268)
T ss_dssp             TTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEE
T ss_pred             CCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEE
Confidence            3                233433    333444455 999999874

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.78  E-value=6.3e-18  Score=118.43  Aligned_cols=148  Identities=22%  Similarity=0.353  Sum_probs=107.5

Q ss_pred             CeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe-----------------------------------eeeE
Q psy15206         13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR-----------------------------------LGRL   57 (232)
Q Consensus        13 P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~-----------------------------------~~~~   57 (232)
                      +.|... +.++.+.+|++++|.|.+.+.|.+.+.|++++..                                   .|.|
T Consensus         2 ~~v~~~-~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y   80 (212)
T 1f97_A            2 GSVYTA-QSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY   80 (212)
T ss_dssp             CEEECS-CSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE
T ss_pred             ceEEec-CCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEE
Confidence            455555 7888999999999999999989999999995422                                   1467


Q ss_pred             EEEeeee--------cCceeecCCcEEecCCCCceEeecCCcEEEEee-eccCCCCeEEEEeCCe-eeCCCCc-------
Q psy15206         58 HLAIPYT--------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECH-AEGHPIPTISWRRENN-AILPNGQ-------  120 (232)
Q Consensus        58 ~~~~~~~--------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~~~W~~~~~-~~~~~~~-------  120 (232)
                      .|.....        .+.|.|..+|..... .....+.+|+.+.|.|. +.+.|.+.+.|++++. .+.....       
T Consensus        81 ~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~  159 (212)
T 1f97_A           81 TCMVSEEGGQNYGEVSIHLTVLVPPSKPTI-SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN  159 (212)
T ss_dssp             EEEEEETTSSSEEEEEEEEEEEBCCCCCEE-ECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSS
T ss_pred             EEEEEccCCCcccEEEEEEEEEcCCCCccc-CCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccC
Confidence            7765331        455666665543321 22246778999999999 7888999999999998 6543221       


Q ss_pred             --EE--eeCCeEEECCCCCCCCeEEEEEeEeCCCCc-eeeEEEEEEE
Q psy15206        121 --TI--FTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVE  162 (232)
Q Consensus       121 --~~--~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~  162 (232)
                        ..  ...+.|.|.++..+|.|.|+|.+.|..|.. .+..+.+.|.
T Consensus       160 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             SCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             ceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence              11  235689999999999999999999988874 3455566554

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.78  E-value=1.3e-17  Score=116.69  Aligned_cols=144  Identities=22%  Similarity=0.356  Sum_probs=104.3

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEeCcE-------------------------------------------eeee
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK-------------------------------------------RLGR   56 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~-------------------------------------------~~~~   56 (232)
                      +.+..+.+|++++|.|...+.+.+.+.|+++..                                           +.|.
T Consensus         6 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~   85 (208)
T 3r4d_A            6 AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGV   85 (208)
T ss_dssp             EESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEE
T ss_pred             CccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeE
Confidence            556789999999999998888889999998521                                           1135


Q ss_pred             EEEEeeee-------cCceeecCC---cEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee--
Q psy15206         57 LHLAIPYT-------SPEAQVDTP---PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--  124 (232)
Q Consensus        57 ~~~~~~~~-------~~~l~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~--  124 (232)
                      |.|.....       .+.|.|..+   |.+.. ....  +..|+.+.|.|.+.+.+ +.+.|++++..+....+....  
T Consensus        86 Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~  161 (208)
T 3r4d_A           86 YTLDMTDENYRRTQATVRFHVHQPVTQPFLQV-TNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQN  161 (208)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEECCCCCCEEEE-SCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETT
T ss_pred             EEEEEEcccCceeEEEEEEEeccCCCCCEEec-CCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCC
Confidence            66655222       344555443   33322 2222  67899999999998865 799999999887655554433  


Q ss_pred             CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEE
Q psy15206        125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIV  167 (232)
Q Consensus       125 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  167 (232)
                      ++.|.|.++..+|.|.|+|.+.|..|...+..+.+.|..+|..
T Consensus       162 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          162 NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH  204 (208)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred             CCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence            4789999999999999999999999887778888887776653

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.78  E-value=1.2e-17  Score=119.58  Aligned_cols=150  Identities=17%  Similarity=0.262  Sum_probs=100.3

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--------------eee---CCCCcEEee-----CCeEEECCCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--------------NAI---LPNGQTIFT-----GSTLQIPRITKEDR  138 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--------------~~~---~~~~~~~~~-----~~~l~i~~~~~~~~  138 (232)
                      +....+.+|+.+.|.|.+.+ +.+.+.|++..              ...   ....++...     ..+|.|.+++.+|.
T Consensus         9 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~   87 (240)
T 3q5y_A            9 PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDS   87 (240)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             cceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHC
Confidence            45567889999999999875 66789999821              110   011222221     23799999999999


Q ss_pred             eEEEEEeEeC--CCCceeeEEEEEEE------eccEEEec-cceeeeeccCeEEEEEEeec-CCCC-eEEEeeCCEEecC
Q psy15206        139 GAYYCVAQNG--IGRGARRKIEVKVE------FAPIVTVQ-STRIGQALHHDMDLDCHIEA-YPHP-ILYWAKDGEIVVN  207 (232)
Q Consensus       139 g~y~C~~~~~--~~~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~g~~~~~  207 (232)
                      |.|.|.+.+.  ..........+.|.      .+|.+... +....+..|+.+.|.|.+.| .|.+ .+.|+++|..+..
T Consensus        88 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~  167 (240)
T 3q5y_A           88 AMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS  167 (240)
T ss_dssp             EEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred             EEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcC
Confidence            9999999732  11112233455555      45665543 33444556999999999988 5555 7999999988753


Q ss_pred             C------------CeEE----EEEeccccCC-ceEEEEecC
Q psy15206        208 D------------EYHS----ISNFGTSEGT-TGSLQCKVP  231 (232)
Q Consensus       208 ~------------~~~~----~~~~~~~~~d-~g~Y~C~~~  231 (232)
                      .            ..+.    +.+......| .|.|+|.|.
T Consensus       168 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~  208 (240)
T 3q5y_A          168 GVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQ  208 (240)
T ss_dssp             TEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEE
T ss_pred             cEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEE
Confidence            2            2333    5555555667 679999984

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.78  E-value=4.8e-18  Score=120.41  Aligned_cols=149  Identities=21%  Similarity=0.321  Sum_probs=100.9

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eeeC-----------------CCCcEEee------CCeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAIL-----------------PNGQTIFT------GSTLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.+.+  .+.+.|++..  ..+.                 ...++...      ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMR   87 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCC
Confidence            345678999999999998765  5789999853  2110                 11233322      2479999999


Q ss_pred             CCCCeEEEEEeEeCCC-----C--ceeeEEEEEEEe----ccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEeeC
Q psy15206        135 KEDRGAYYCVAQNGIG-----R--GARRKIEVKVEF----APIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWAKD  201 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~-----~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~  201 (232)
                      .+|.|.|.|.+.+..+     .  .......|.|..    +|.+........+..|+.+.|.|.+.|. |.+ .+.|+++
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  167 (225)
T 1op3_H           88 VEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG  167 (225)
T ss_dssp             GGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTT
T ss_pred             hhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecC
Confidence            9999999999998653     1  111345666664    4555443322235679999999999886 766 8999998


Q ss_pred             CEEe---------cCCCeE----EEEEeccccCCceEEEEecC
Q psy15206        202 GEIV---------VNDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       202 g~~~---------~~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |..+         ..++.+    .+.+......| |.|+|.|.
T Consensus       168 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~  209 (225)
T 1op3_H          168 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  209 (225)
T ss_dssp             SCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEE
T ss_pred             CCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEE
Confidence            8642         122333    24555666567 99999974

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.78  E-value=2.5e-18  Score=121.63  Aligned_cols=148  Identities=20%  Similarity=0.334  Sum_probs=100.4

Q ss_pred             ceEeecCCcEEEEeeeccCC--CCeEEEEeCC--ee---e---C-------------CCCcEEee------CCeEEECCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHP--IPTISWRREN--NA---I---L-------------PNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~---~-------------~~~~~~~~------~~~l~i~~~  133 (232)
                      ...+.+|+.+.|.|.+.+.+  .+.+.|++..  ..   +   .             ...++...      ..+|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (222)
T 1q9r_B            9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (222)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence            34677899999999998765  5689999853  11   0   0             01233221      237999999


Q ss_pred             CCCCCeEEEEEeEeCCCC----ceeeEEEEEEEe----ccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCE
Q psy15206        134 TKEDRGAYYCVAQNGIGR----GARRKIEVKVEF----APIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGE  203 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~  203 (232)
                      +.+|.|.|.|.+.+..+.    .......+.|..    +|.+...+....+..|+.+.|.|.+.|. |.| .+.|+++|.
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  168 (222)
T 1q9r_B           89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  168 (222)
T ss_dssp             CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCe
Confidence            999999999999986431    122234555543    5666554433345679999999999985 888 999999986


Q ss_pred             Eec--------CCCeE----EEEEeccccCCceEEEEecC
Q psy15206        204 IVV--------NDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       204 ~~~--------~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.        .++.+    .|.+......| |.|+|.|.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~  207 (222)
T 1q9r_B          169 SSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVA  207 (222)
T ss_dssp             CTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEE
T ss_pred             EcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEE
Confidence            432        12233    24555666678 99999974

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.77  E-value=3.8e-18  Score=119.64  Aligned_cols=147  Identities=22%  Similarity=0.353  Sum_probs=99.3

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eeeC----------------CCCcEEee------CCeEEECCCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAIL----------------PNGQTIFT------GSTLQIPRITK  135 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~  135 (232)
                      ....+.+|+++.|.|.+.+.+  .+.+.|+++.  ....                ...++...      ..+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   87 (210)
T 3d9a_H            8 GPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTT   87 (210)
T ss_dssp             SCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCc
Confidence            345677899999999998765  3789999852  2210                12233221      12899999999


Q ss_pred             CCCeEEEEEeEeCCCCceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCEEec---
Q psy15206        136 EDRGAYYCVAQNGIGRGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEIVV---  206 (232)
Q Consensus       136 ~~~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~~~---  206 (232)
                      +|.|.|.|.+.+...  ......+.|.    .+|.+...+....+..|+.+.|.|.+.|. |.| .+.|+++|..+.   
T Consensus        88 ~D~G~Y~C~~~~~~~--~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~  165 (210)
T 3d9a_H           88 EDTATYYCANWDGDY--WGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT  165 (210)
T ss_dssp             GGCEEEEEEETTSSC--BCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE
T ss_pred             ccCEEEEEEEecCcc--cccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEE
Confidence            999999999987531  1122455554    35666554433456789999999999887 888 999999986421   


Q ss_pred             -----CCCeE----EEEEeccccCCceEEEEecC
Q psy15206        207 -----NDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 -----~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                           .++.+    .+.+......| |.|+|.|.
T Consensus       166 ~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~  198 (210)
T 3d9a_H          166 FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVA  198 (210)
T ss_dssp             CCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEE
T ss_pred             cCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEE
Confidence                 11222    24555555555 99999974

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.77  E-value=3e-17  Score=122.78  Aligned_cols=157  Identities=19%  Similarity=0.335  Sum_probs=107.2

Q ss_pred             cEEecCCCCceEeecCCcEEEEeeeccC----CCCeEEEEeCCe--e-------------e--CCCCcEEe-----eCCe
Q psy15206         74 PVILNNSPQLSVAKEGQSVQLECHAEGH----PIPTISWRRENN--A-------------I--LPNGQTIF-----TGST  127 (232)
Q Consensus        74 p~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~~~~W~~~~~--~-------------~--~~~~~~~~-----~~~~  127 (232)
                      |......+....+.+|+.+.|.|.+.+.    +.+.+.|++++.  .             .  ....+...     .+.+
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   93 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT   93 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence            3333335566788899999999998775    344699999541  1             1  11122222     2457


Q ss_pred             EEECCCCCCCCeEEEEEeEe-CCCCceeeEEEEEEEeccEEEe--ccceeeeecc---CeEEEEEE-eecCCCCeEEEee
Q psy15206        128 LQIPRITKEDRGAYYCVAQN-GIGRGARRKIEVKVEFAPIVTV--QSTRIGQALH---HDMDLDCH-IEAYPHPILYWAK  200 (232)
Q Consensus       128 l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~~g---~~~~l~C~-~~~~p~~~~~W~~  200 (232)
                      |.|.+++.+|.|.|.|.+.+ ..+. ....+.+.|..+|.+..  .+....+..|   +.+.|.|. +.+.|.+.+.|++
T Consensus        94 L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~  172 (331)
T 3u83_A           94 IRLSRLELEDEGVYICEFATFPTGN-RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWET  172 (331)
T ss_dssp             EEECSCCGGGCEEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEE
T ss_pred             EEEcccCcccCcEEEEEEEecCCCc-cEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEc
Confidence            99999999999999999554 4443 66778888888887643  4555667777   77999998 8899999999999


Q ss_pred             C--CEEe-----cCCCeE----EEEEeccccCCceEEEEecC
Q psy15206        201 D--GEIV-----VNDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       201 ~--g~~~-----~~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +  +...     ..+..+    .+.+..+...|+|.|+|.|.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  214 (331)
T 3u83_A          173 RLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVN  214 (331)
T ss_dssp             SSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEE
T ss_pred             CCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEe
Confidence            5  3221     122322    35555667899999999874

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.77  E-value=1.1e-17  Score=121.59  Aligned_cols=152  Identities=14%  Similarity=0.196  Sum_probs=100.7

Q ss_pred             CCCceEeecCCcEEEEeeeccCC-----CCeEEEEeCC--eee---C---------CCCcEEee----CCeEEECCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP-----IPTISWRREN--NAI---L---------PNGQTIFT----GSTLQIPRITKE  136 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~-----~~~~~W~~~~--~~~---~---------~~~~~~~~----~~~l~i~~~~~~  136 (232)
                      .+....+.+|+++.|.|.+.+.+     .+.+.|++..  ..+   .         ...++...    ..+|.|.+++.+
T Consensus        21 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~  100 (268)
T 1x9q_A           21 TPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAE  100 (268)
T ss_dssp             ECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChh
Confidence            35556778999999999998876     4689999853  211   0         12233221    237999999999


Q ss_pred             CCeEEEEEeEeCCCCceeeEEEEEEEeccE-----------------------EEeccceeeeeccCeEEEEEEeecCCC
Q psy15206        137 DRGAYYCVAQNGIGRGARRKIEVKVEFAPI-----------------------VTVQSTRIGQALHHDMDLDCHIEAYPH  193 (232)
Q Consensus       137 ~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-----------------------~~~~~~~~~~~~g~~~~l~C~~~~~p~  193 (232)
                      |+|.|.|.+.+..+........|.|...+.                       ....+....+..|++++|.|.+.+.+.
T Consensus       101 DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~  180 (268)
T 1x9q_A          101 DLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVTSGFTF  180 (268)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEEESSCG
T ss_pred             HCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEecCccc
Confidence            999999999886432122233454443211                       122344567888999999999998764


Q ss_pred             --CeEEEeeC--CEE---ec----------------CC-----------CeEEEEEeccccCCceEEEEecC
Q psy15206        194 --PILYWAKD--GEI---VV----------------ND-----------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       194 --~~~~W~~~--g~~---~~----------------~~-----------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                        +.+.|+|+  |..   +.                ..           ....|.+.++..+|+|.|.|.+.
T Consensus       181 ~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  252 (268)
T 1x9q_A          181 GHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGA  252 (268)
T ss_dssp             GGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEc
Confidence              68999985  221   10                01           13567888888999999999874

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.77  E-value=1.5e-17  Score=116.32  Aligned_cols=143  Identities=17%  Similarity=0.238  Sum_probs=98.0

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecC-CCCCeEEEEeCcEee-----------------------------eeEEEEe
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFKRL-----------------------------GRLHLAI   61 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~-~p~~~~~W~~~~~~~-----------------------------~~~~~~~   61 (232)
                      .|.|...  .++.+.+|+.+.|.|.+.. .|.+.++|++++..+                             |.|+|..
T Consensus         3 ~p~~~~~--~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a   80 (207)
T 3rbs_A            3 DPFTKSE--LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL   80 (207)
T ss_dssp             ---CCEE--EEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEE
T ss_pred             CCeeecC--CceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEE
Confidence            4666543  5688999999999999974 799999999965543                             2444422


Q ss_pred             eee----cCcee----------------e-----cCCcEEecCCCCceEeecCCcEEEEeeeccC-CCCeEEEEeCCeee
Q psy15206         62 PYT----SPEAQ----------------V-----DTPPVILNNSPQLSVAKEGQSVQLECHAEGH-PIPTISWRRENNAI  115 (232)
Q Consensus        62 ~~~----~~~l~----------------v-----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~  115 (232)
                      ...    ...+.                +     ..+|.+... . ...+.+|+.+.|.|.+.|. |.|.+.|++++..+
T Consensus        81 ~Ng~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l  158 (207)
T 3rbs_A           81 QDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY-L-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREI  158 (207)
T ss_dssp             EETTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEE-E-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred             ECCCeEEEEEEEEEccchhhhcccccccccccccCCCCceEec-C-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEEC
Confidence            110    00100                0     024544331 1 3567789999999999998 89999999999988


Q ss_pred             CCCCcEEee--CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206        116 LPNGQTIFT--GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus       116 ~~~~~~~~~--~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      ....+....  ...|.|.++..+|.|.|+|.+.|..|. ......|
T Consensus       159 ~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L  203 (207)
T 3rbs_A          159 SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGK-DKSRLKL  203 (207)
T ss_dssp             CCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEE-EEEEEEE
T ss_pred             CCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCE-EEEEEEE
Confidence            654433222  236999999999999999999998886 3344443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.77  E-value=3.7e-18  Score=128.58  Aligned_cols=149  Identities=20%  Similarity=0.355  Sum_probs=101.8

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeC--CeeeC-----------------CCCcEEee------CCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRRE--NNAIL-----------------PNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~~-----------------~~~~~~~~------~~~l~i~~~  133 (232)
                      +....+.+|+.+.|.|.+.+.+  .+.+.|+++  +..+.                 ...++...      ..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (344)
T 1za6_B            7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL   86 (344)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence            3446778999999999998763  567999986  32220                 11233322      137999999


Q ss_pred             CCCCCeEEEEEeEeCCCCceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecC-CC-CeEEEeeCCEEe--
Q psy15206        134 TKEDRGAYYCVAQNGIGRGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAY-PH-PILYWAKDGEIV--  205 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~g~~~--  205 (232)
                      +.+|.|.|.|.+.+..+. ......|.|.    .+|.+...+....+..|+.+.|.|.+.|. |. +.+.|+|+|..+  
T Consensus        87 ~~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~  165 (344)
T 1za6_B           87 RSEDTAVYFCTRSLNMAY-WGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV  165 (344)
T ss_dssp             CGGGCEEEEEEETTTTCE-ECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTE
T ss_pred             CcccCEEEEEEEecCcce-ecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCce
Confidence            999999999999884322 2234566665    35566544433446789999999999987 54 689999998642  


Q ss_pred             -------cCCCeE----EEEEeccccCCceEEEEecC
Q psy15206        206 -------VNDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       206 -------~~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                             ..++.+    .|.+......| |.|+|.|.
T Consensus       166 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~  201 (344)
T 1za6_B          166 HTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  201 (344)
T ss_dssp             EECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEE
T ss_pred             eECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEE
Confidence                   122333    34555555566 99999974

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.77  E-value=3.7e-18  Score=121.19  Aligned_cols=150  Identities=24%  Similarity=0.408  Sum_probs=96.1

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eee------C-----------CCCcEEee------CCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAI------L-----------PNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~------~-----------~~~~~~~~------~~~l~i~~~  133 (232)
                      +....+.+|+++.|.|.+.+.+  .+.+.|++..  ..+      .           ...++...      ..+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            4456778999999999998766  5789999864  211      0           01233221      247999999


Q ss_pred             CCCCCeEEEEEeEeCCCCceeeEEEEEEEe----ccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCEEec-
Q psy15206        134 TKEDRGAYYCVAQNGIGRGARRKIEVKVEF----APIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEIVV-  206 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~~~-  206 (232)
                      +.+|.|.|.|.+.+...........|.|..    +|.+........+..|+.++|.|.+.|. |.+ .+.|+++|..+. 
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~  166 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV  166 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCc
Confidence            999999999999885321112234666653    4565544333345679999999999986 766 899999986531 


Q ss_pred             --C-----CCeE----EEEEeccccCCceEEEEecC
Q psy15206        207 --N-----DEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 --~-----~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                        .     .+.+    .+.+......| |.|+|.|.
T Consensus       167 ~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~  201 (227)
T 1mju_H          167 HTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVA  201 (227)
T ss_dssp             EECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEE
T ss_pred             EECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEE
Confidence              0     1222    34445555556 99999974

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.77  E-value=2.1e-17  Score=114.84  Aligned_cols=135  Identities=19%  Similarity=0.267  Sum_probs=94.0

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe--------------------------eeeEEEEeee
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR--------------------------LGRLHLAIPY   63 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~--------------------------~~~~~~~~~~   63 (232)
                      ..+|.|... |. ..+.+|++++|.|.+.+.|. .+.|+|++..                          .|.|+|....
T Consensus         3 ~~~P~i~~~-p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (198)
T 1ugn_A            3 LPKPTLWAE-PG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   79 (198)
T ss_dssp             CCCCEEEEE-SC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCeEecc-CC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEEC
Confidence            468999877 44 48999999999999998765 7999995432                          2578887632


Q ss_pred             e---------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE---Ee---eC
Q psy15206         64 T---------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT---IF---TG  125 (232)
Q Consensus        64 ~---------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~---~~---~~  125 (232)
                      .         .+.|.|..   +|.+.. .+ ...+.+|+.+.|.|.+.+. .+.+.|++++..+......   ..   ..
T Consensus        80 ~~~g~~~~s~~~~l~V~~~~~~p~i~~-~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~  156 (198)
T 1ugn_A           80 DTAGRSESSDPLELVVTGAYIKPTLSA-QP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSR  156 (198)
T ss_dssp             TTTEECCCCCCEEEEEECSSCCCEEEE-ES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCE
T ss_pred             CCCCcccCCccEEEEEcccccCCcccc-CC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcce
Confidence            1         34456654   233322 22 2467789999999999887 7799999998876432211   11   13


Q ss_pred             CeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206        126 STLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       126 ~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      ..|.|.++..+|.|.|+|.+.|..+
T Consensus       157 ~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          157 AIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             EEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             eEEEecccCcccCeEEEEEEEeCCC
Confidence            6799999999999999999998754

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.77  E-value=1.2e-17  Score=118.07  Aligned_cols=148  Identities=21%  Similarity=0.420  Sum_probs=99.1

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeCCe--ee------C-------------CCCcEEee------CCeEEECC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRRENN--AI------L-------------PNGQTIFT------GSTLQIPR  132 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~--~~------~-------------~~~~~~~~------~~~l~i~~  132 (232)
                      ....+.+|+++.|.|.+.+.+  .+.+.|++...  ..      .             ...++...      ..+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (221)
T 3m8o_H            8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS   87 (221)
T ss_dssp             SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence            345677899999999997643  56799997431  11      0             01222221      12599999


Q ss_pred             CCCCCCeEEEEEeEeCCC-CceeeEEEEEEE----eccEEE-eccceeeeeccCeEEEEEEeec-CCC-C-eEEEeeCCE
Q psy15206        133 ITKEDRGAYYCVAQNGIG-RGARRKIEVKVE----FAPIVT-VQSTRIGQALHHDMDLDCHIEA-YPH-P-ILYWAKDGE  203 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~~~-~~~~~~~~l~v~----~~p~~~-~~~~~~~~~~g~~~~l~C~~~~-~p~-~-~~~W~~~g~  203 (232)
                      ++.+|+|.|.|.+.+... ........+.|.    .+|.+. ..+...  ..|+.++|.|.+.+ .|. + .+.|+++|.
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~  165 (221)
T 3m8o_H           88 LKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSESGQ  165 (221)
T ss_dssp             CCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCCST
T ss_pred             CCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEECCE
Confidence            999999999999987531 212333455554    345554 233322  68999999999988 665 3 899999986


Q ss_pred             Ee----------cCCCeEE----EEEeccccCCceEEEEecC
Q psy15206        204 IV----------VNDEYHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       204 ~~----------~~~~~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+          ..++.+.    +.+......|.|.|+|.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~  207 (221)
T 3m8o_H          166 GVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVK  207 (221)
T ss_dssp             TCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEE
T ss_pred             ECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEE
Confidence            54          2334443    5566667789999999974

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.77  E-value=1.4e-17  Score=120.83  Aligned_cols=138  Identities=17%  Similarity=0.259  Sum_probs=104.7

Q ss_pred             EeecCCcEEEEeeecc-CCCC--eEEEEeCCeeeCCCCcEEeeCCeEEECCC---CCCCCe--EEEEEeEeCCCCceeeE
Q psy15206         85 VAKEGQSVQLECHAEG-HPIP--TISWRRENNAILPNGQTIFTGSTLQIPRI---TKEDRG--AYYCVAQNGIGRGARRK  156 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~-~~~~--~~~W~~~~~~~~~~~~~~~~~~~l~i~~~---~~~~~g--~y~C~~~~~~~~~~~~~  156 (232)
                      .+.+|+.+.|.|.+.+ .|.+  .+.|++++..+..  .....+..+.+..+   ...|.|  .|+|.+.+..+. ....
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~-~~~~   90 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQS-QETL   90 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC--EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEE-EEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc--eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCC-cEEE
Confidence            5778999999999988 7766  8999999987643  33344556666655   777887  499999998766 5567


Q ss_pred             EEEEEEe--ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC-CCeEEEEEeccccCCceEEEEecC
Q psy15206        157 IEVKVEF--APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN-DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       157 ~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+.|..  +|.+.  +....+.+|+.+.|.|.+.  |.+.+.|  +|..+.. ..+..+.+......|+|.|+|.|.
T Consensus        91 ~~l~V~~~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~  162 (265)
T 2oz4_A           91 QTVTIYSFPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLGPRAQLLLKATPEDNGRSFSCSAT  162 (265)
T ss_dssp             EEEEEECCCCCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCSSEECCEEECCGGGTTEEEEEEEE
T ss_pred             EEEEEeCCCCceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCCCcEEEEEccccccCCceEEEEEE
Confidence            7788875  33443  3455677899999999998  8889999  7776643 345556677778899999999983

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.77  E-value=7.3e-18  Score=117.50  Aligned_cols=150  Identities=15%  Similarity=0.208  Sum_probs=99.8

Q ss_pred             eecCCCcce-EeecCCeEEEEEEecCCCCCeEEEEeCc------E------------------eeeeEEEEeeee-----
Q psy15206         15 ILNNSTQLS-VAKEGQSVQLECHAEGHPIPTISWRRNF------K------------------RLGRLHLAIPYT-----   64 (232)
Q Consensus        15 i~~~~~~~~-~~~~G~~v~l~C~~~~~p~~~~~W~~~~------~------------------~~~~~~~~~~~~-----   64 (232)
                      +... |.+. .+.+|++++|.|.+.|.|.+.+.|++..      .                  +.|.|.|.....     
T Consensus         3 v~i~-p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~   81 (202)
T 1vca_A            3 IETT-PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLE   81 (202)
T ss_dssp             EEEE-SSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEE
T ss_pred             EEEC-CCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEe
Confidence            4444 4444 4559999999999999899999999831      0                  113566655322     


Q ss_pred             -cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCC-C--CeEEEEeCCeeeCCCCc--------EEeeCCeEEECC
Q psy15206         65 -SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHP-I--PTISWRRENNAILPNGQ--------TIFTGSTLQIPR  132 (232)
Q Consensus        65 -~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~--~~~~W~~~~~~~~~~~~--------~~~~~~~l~i~~  132 (232)
                       .+.|.|..+|......+. ..+.+|+.+.|.|.+.+.+ .  +.+.|++++..+.....        .......|.|..
T Consensus        82 ~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~  160 (202)
T 1vca_A           82 KGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTP  160 (202)
T ss_dssp             EEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECC
T ss_pred             eEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEe
Confidence             556777665532221222 4577899999999998753 3  36899999986532110        011223567888


Q ss_pred             CCCCCCeEEEEEeEeCCCCc------eeeEEEEEEEeccE
Q psy15206        133 ITKEDRGAYYCVAQNGIGRG------ARRKIEVKVEFAPI  166 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~~~~~------~~~~~~l~v~~~p~  166 (232)
                      ...+|.|.|+|.+.|..+..      ....+.|.|.++|.
T Consensus       161 ~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          161 VIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             CGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             eeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            88889999999999976542      34567778888775

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.77  E-value=4.9e-18  Score=124.98  Aligned_cols=151  Identities=17%  Similarity=0.359  Sum_probs=104.5

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eeeC-----------------CCCcEEee------CCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAIL-----------------PNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~  133 (232)
                      +....+.+|+++.|.|.+.+.+  .+.+.|++..  ..+.                 ...++...      ..+|.|.++
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  108 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL  108 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred             CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence            3456788999999999998765  4689999853  1110                 01122111      247999999


Q ss_pred             CCCCCeEEEEEeEeCC-CCc---eeeEEEEEEEe----------------ccEEEeccceeeeeccCeEEEEEEeecCCC
Q psy15206        134 TKEDRGAYYCVAQNGI-GRG---ARRKIEVKVEF----------------APIVTVQSTRIGQALHHDMDLDCHIEAYPH  193 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~-~~~---~~~~~~l~v~~----------------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~  193 (232)
                      +.+|+|.|.|.+.+.. +..   ......+.|..                ++.+...+....+.+|++++|.|.+.+.+.
T Consensus       109 ~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  188 (291)
T 2gki_A          109 TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLF  188 (291)
T ss_dssp             CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCE
T ss_pred             CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccc
Confidence            9999999999999863 211   11233555554                233444566677889999999999998887


Q ss_pred             C------eEEEeeC--CE---Eec------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        194 P------ILYWAKD--GE---IVV------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       194 ~------~~~W~~~--g~---~~~------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +      .+.|+|+  |.   .+.                  ....+.|.+.++..+|+|.|+|.+.
T Consensus       189 ~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~  255 (291)
T 2gki_A          189 NSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQS  255 (291)
T ss_dssp             ETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             cccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEc
Confidence            6      8999996  22   111                  1123568888899999999999874

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.77  E-value=1e-17  Score=118.27  Aligned_cols=149  Identities=21%  Similarity=0.398  Sum_probs=100.2

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeCC--ee---e---CC-------------CCcEEee------CCeEEECC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NA---I---LP-------------NGQTIFT------GSTLQIPR  132 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~---~~-------------~~~~~~~------~~~l~i~~  132 (232)
                      ....+.+|+++.|.|.+.+.+  .+.+.|++++  ..   +   ..             ..++...      ..+|.|.+
T Consensus         8 ~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   87 (220)
T 1pz5_B            8 GGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNN   87 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEcc
Confidence            445777899999999998765  5789999853  11   1   00             1233221      12799999


Q ss_pred             CCCCCCeEEEEEeEeCCCCc--eeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCEE
Q psy15206        133 ITKEDRGAYYCVAQNGIGRG--ARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEI  204 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~~~~~--~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~  204 (232)
                      ++.+|.|.|.|.+.+..+..  ......+.|.    .+|.+...+....+..|+.+.|.|.+.|. |.| .+.|++++..
T Consensus        88 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~  167 (220)
T 1pz5_B           88 LRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGALS  167 (220)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             CCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCCcc
Confidence            99999999999999864321  1133456665    35666554433445689999999999987 888 9999998762


Q ss_pred             -----ec---CCCeE----EEEEeccccCCceEEEEecC
Q psy15206        205 -----VV---NDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       205 -----~~---~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                           ..   ..+.+    .+.+......| |.|+|.|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~  205 (220)
T 1pz5_B          168 SGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVA  205 (220)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEE
T ss_pred             cceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEE
Confidence                 11   11233    23444555445 99999974

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.77  E-value=2.8e-17  Score=115.18  Aligned_cols=138  Identities=19%  Similarity=0.347  Sum_probs=99.5

Q ss_pred             eecCCeEEEEEEecC-CCCCeEEEEeCcEee---------------------------eeEEEEeeee------cCceee
Q psy15206         25 AKEGQSVQLECHAEG-HPIPTISWRRNFKRL---------------------------GRLHLAIPYT------SPEAQV   70 (232)
Q Consensus        25 ~~~G~~v~l~C~~~~-~p~~~~~W~~~~~~~---------------------------~~~~~~~~~~------~~~l~v   70 (232)
                      .-+|+.+.|.|.+.+ .|.+.+.|++++..+                           |.|.|.....      .+.|.+
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v   93 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG   93 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEE
Confidence            346788899999987 458899999965432                           3455544221      222322


Q ss_pred             cC--------------------CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeC-----
Q psy15206         71 DT--------------------PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG-----  125 (232)
Q Consensus        71 ~~--------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-----  125 (232)
                      ..                    .|......+....+..|+.+.|.|.+.+.|.+.+.|++++..+....+.....     
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~  173 (212)
T 2r15_A           94 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT  173 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTE
T ss_pred             eeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCE
Confidence            21                    33344334556788899999999999999999999999999887655544332     


Q ss_pred             CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206        126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       126 ~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      ..|.|.++..+|.|.|+|.+.|..|. ....+.+.|..
T Consensus       174 ~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~  210 (212)
T 2r15_A          174 AYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFI  210 (212)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             EEEEEcCcchHHCeEEEEEEEcCCCc-EEEEEEEEEEc
Confidence            28999999999999999999998876 55666666653

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.77  E-value=9.1e-19  Score=124.63  Aligned_cols=151  Identities=13%  Similarity=0.173  Sum_probs=98.3

Q ss_pred             CCCceEeecCCcEEEEeeeccC-CC-C-eEEEEeCCeee-CCCCcEE--------eeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH-PI-P-TISWRRENNAI-LPNGQTI--------FTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-~~-~-~~~W~~~~~~~-~~~~~~~--------~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+....+..|+.+.|.|.+.+. |. + .+.|+++|..+ .......        ...+.|.|.++..+|.|.|+|.+.+
T Consensus        19 ~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~~   98 (231)
T 2w59_A           19 PPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQH   98 (231)
T ss_dssp             CCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEEC
T ss_pred             CcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEEc
Confidence            4444556689999999999884 53 4 89999988766 2211111        1223699999999999999999998


Q ss_pred             CCCCceeeEEEEEE----EeccEEEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeCCEEecCC-------------
Q psy15206        148 GIGRGARRKIEVKV----EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDGEIVVND-------------  208 (232)
Q Consensus       148 ~~~~~~~~~~~l~v----~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g~~~~~~-------------  208 (232)
                      ..+. ......+.+    ..+|.+.+.+.......+..+.|.|.+.|+++  +.|.|+|||..+...             
T Consensus        99 ~~~~-~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~  177 (231)
T 2w59_A           99 EELP-LPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERT  177 (231)
T ss_dssp             TTCS-SCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTT
T ss_pred             CCCC-CceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCccc
Confidence            7643 212222221    14666655432222234567999999998633  589999999876321             


Q ss_pred             --------CeEE----EEEeccccCCceEEEEecC
Q psy15206        209 --------EYHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       209 --------~~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                              ..|.    +.+......|.|.|+|.|.
T Consensus       178 ~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~  212 (231)
T 2w59_A          178 ANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAV  212 (231)
T ss_dssp             SCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEE
T ss_pred             ccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEE
Confidence                    2222    2333444467999999984

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.77  E-value=9.3e-17  Score=110.13  Aligned_cols=138  Identities=21%  Similarity=0.406  Sum_probs=100.9

Q ss_pred             eEeecCCeEEEEEEecCCCCC--eEEEEeCcEee--------------------eeEEEEeee---ecCceeecCCcEEe
Q psy15206         23 SVAKEGQSVQLECHAEGHPIP--TISWRRNFKRL--------------------GRLHLAIPY---TSPEAQVDTPPVIL   77 (232)
Q Consensus        23 ~~~~~G~~v~l~C~~~~~p~~--~~~W~~~~~~~--------------------~~~~~~~~~---~~~~l~v~~~p~~~   77 (232)
                      ..+.+|++++|.|.+.+.+.+  .+.|++++..+                    |.|.|....   ..+.|.|..+|.+.
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~~~~d~G~Y~C~~~n~~~~~~~l~V~~~P~~~   87 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVK   87 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEECGGGCCEEEEEEEESTTSCEEEEEECCSCCCE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEechhhCeEEEEEEECCcCcEEEEEEecCCcee
Confidence            567899999999999876655  99999954332                    467776542   25567777777665


Q ss_pred             cCCCCceEeecCCcEEEEeeeccCC-CCeEEEEe---CCeeeCCC---CcEEee----CCeEEECCCC-CCCCeEEEEEe
Q psy15206         78 NNSPQLSVAKEGQSVQLECHAEGHP-IPTISWRR---ENNAILPN---GQTIFT----GSTLQIPRIT-KEDRGAYYCVA  145 (232)
Q Consensus        78 ~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~---~~~~~~~~---~~~~~~----~~~l~i~~~~-~~~~g~y~C~~  145 (232)
                      . .+....+.+|+.+.|.|.+.+.| .+.+.|++   ++......   .++...    ...|.|.++. ..|.|.|.|.+
T Consensus        88 ~-~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a  166 (184)
T 3b5h_A           88 A-VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNG  166 (184)
T ss_dssp             E-SCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEE
T ss_pred             e-cCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEE
Confidence            4 34556788899999999999988 78999999   55444321   222221    2379999999 89999999999


Q ss_pred             EeCCCCceeeEEEEEEE
Q psy15206        146 QNGIGRGARRKIEVKVE  162 (232)
Q Consensus       146 ~~~~~~~~~~~~~l~v~  162 (232)
                      .|..|. ....+.|.|.
T Consensus       167 ~N~~g~-~~~~~~l~V~  182 (184)
T 3b5h_A          167 TSSKGS-DQAIITLRVR  182 (184)
T ss_dssp             EETTEE-EEEEEEEEEC
T ss_pred             EeCCCc-ceEEEEEEEe
Confidence            998876 4445666553

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.77  E-value=1e-18  Score=124.89  Aligned_cols=146  Identities=14%  Similarity=0.208  Sum_probs=98.6

Q ss_pred             eecCCcEEEEeeeccC---CCC-eEEEEeCCeeeCCCC---------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         86 AKEGQSVQLECHAEGH---PIP-TISWRRENNAILPNG---------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~---~~~-~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      +.+|+.+.|.|.+.+.   |.+ .+.|++++..+....         ......+.|.|.++..+|.|.|.|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            5689999999999876   665 899999886653210         111123479999999999999999999876642


Q ss_pred             -eeeEEEE--EEEeccEEEeccceeeeeccCeEEEEEEeecC-CC-CeEEEeeCCEEecC----------CCeEEEE---
Q psy15206        153 -ARRKIEV--KVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY-PH-PILYWAKDGEIVVN----------DEYHSIS---  214 (232)
Q Consensus       153 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~g~~~~~----------~~~~~~~---  214 (232)
                       ..+.+.+  .+..+|.+.+.+.......|+.+.|.|.+.|+ |. ..+.|+|||..+..          ++.|.+.   
T Consensus       109 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l  188 (239)
T 1i1c_A          109 PIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKL  188 (239)
T ss_dssp             CEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEE
T ss_pred             CcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEE
Confidence             2222222  34467777665544333458899999999985 44 37999999987642          2233332   


Q ss_pred             -EeccccCCceEEEEecC
Q psy15206        215 -NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       215 -~~~~~~~d~g~Y~C~~~  231 (232)
                       +......|.|.|+|.|.
T Consensus       189 ~v~~~~~~~~g~YtC~v~  206 (239)
T 1i1c_A          189 NVKKETWQQGNTFTCSVL  206 (239)
T ss_dssp             EEEHHHHHTTCCEEEEEE
T ss_pred             EEChhhcCCCCEEEEEEE
Confidence             12222246899999874

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.76  E-value=2.2e-18  Score=120.63  Aligned_cols=145  Identities=13%  Similarity=0.182  Sum_probs=90.8

Q ss_pred             ecCCcEEEEeeeccCCC----CeEEEEeCCeeeCCCC---cEEeeCCeEEE------CCCCCCCCeEEEEEeEeCCCCc-
Q psy15206         87 KEGQSVQLECHAEGHPI----PTISWRRENNAILPNG---QTIFTGSTLQI------PRITKEDRGAYYCVAQNGIGRG-  152 (232)
Q Consensus        87 ~~g~~~~l~C~~~~~~~----~~~~W~~~~~~~~~~~---~~~~~~~~l~i------~~~~~~~~g~y~C~~~~~~~~~-  152 (232)
                      ..|+.+.|.|.+.|.++    ..+.|++++..+....   .....++.+.+      ......|.|.|+|.+.+..+.. 
T Consensus        16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~   95 (207)
T 1l6x_A           16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP   95 (207)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred             ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence            68999999999988652    4899999997764321   11122233333      2333345999999999976642 


Q ss_pred             eeeEEEE--EEEeccEEEeccceeeeeccCeEEEEEEeecC-CC-CeEEEeeCCEEecC----------CCeEEEE----
Q psy15206        153 ARRKIEV--KVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY-PH-PILYWAKDGEIVVN----------DEYHSIS----  214 (232)
Q Consensus       153 ~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~g~~~~~----------~~~~~~~----  214 (232)
                      ..+.+.+  .+..+|.+...+.......|..+.|.|.+.|+ |. +.+.|+|||..+..          ++.+.+.    
T Consensus        96 ~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~  175 (207)
T 1l6x_A           96 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLT  175 (207)
T ss_dssp             EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEE
T ss_pred             eEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEE
Confidence            2222222  34457777655443333356679999999985 44 38999999987642          2223322    


Q ss_pred             EeccccCCceEEEEecC
Q psy15206        215 NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       215 ~~~~~~~d~g~Y~C~~~  231 (232)
                      +......|.|.|+|.|.
T Consensus       176 i~~~~~~~~g~YtC~a~  192 (207)
T 1l6x_A          176 VDKSRWQQGNVFSCSVM  192 (207)
T ss_dssp             EEHHHHHTTCCEEEEEE
T ss_pred             ECHHHcCCCCEEEEEEE
Confidence            22223357899999974

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.76  E-value=3e-18  Score=119.31  Aligned_cols=129  Identities=17%  Similarity=0.169  Sum_probs=89.9

Q ss_pred             ceEeecCCeEEEEEE---ecCCCCCeEEEEeCcE--------------------------------------------ee
Q psy15206         22 LSVAKEGQSVQLECH---AEGHPIPTISWRRNFK--------------------------------------------RL   54 (232)
Q Consensus        22 ~~~~~~G~~v~l~C~---~~~~p~~~~~W~~~~~--------------------------------------------~~   54 (232)
                      ++.+..|++++|+|.   +.+.|.+.++|+|++.                                            +.
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            578999999999995   5577899999999431                                            11


Q ss_pred             eeEEEEeeee------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC----CCcE-Ee
Q psy15206         55 GRLHLAIPYT------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP----NGQT-IF  123 (232)
Q Consensus        55 ~~~~~~~~~~------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~----~~~~-~~  123 (232)
                      |.|.|.....      ...|.|..||.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..    ..+. ..
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~-~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~  160 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSV-HSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE  160 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEEEEE-EEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEEC
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCceeee-cceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEe
Confidence            4566654221      56677766555443 44555677899999999999999999999987654422    1122 22


Q ss_pred             eCCeE---EECCCCCCCCeEEEEEeEeCCCC
Q psy15206        124 TGSTL---QIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       124 ~~~~l---~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .+++|   .+.++..+|.|.|+|.+.|..|.
T Consensus       161 ~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~  191 (203)
T 4fa8_A          161 KDGSLSVAVDLSLPKPWHLPVTCVGKNDKEE  191 (203)
T ss_dssp             TTSCEEEEEEEEECSSCCCCEEEEEESSSCE
T ss_pred             CCCCEEEEEECCCCHHHCEEEEEEEEcCCCE
Confidence            34444   44689999999999999999886

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.76  E-value=5.4e-18  Score=125.68  Aligned_cols=149  Identities=22%  Similarity=0.308  Sum_probs=104.7

Q ss_pred             ceEeecCCcEEEEeeeccC-CCCeEEEEeCCeeeCC-----------------CCcEEe-----eCCeEEECCCCCCCCe
Q psy15206         83 LSVAKEGQSVQLECHAEGH-PIPTISWRRENNAILP-----------------NGQTIF-----TGSTLQIPRITKEDRG  139 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~-----------------~~~~~~-----~~~~l~i~~~~~~~~g  139 (232)
                      ..++.+|+++.|.|.+.+. +.+.+.|++++.....                 ..+...     .+.+|.|.++..+|.|
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   87 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG   87 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence            4677789999999998654 4456999986532100                 011111     2357999999999999


Q ss_pred             EEEEEeEeCCCCceeeEEEEEEEeccEEEe--ccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCC------Ce
Q psy15206        140 AYYCVAQNGIGRGARRKIEVKVEFAPIVTV--QSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVND------EY  210 (232)
Q Consensus       140 ~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~--~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~------~~  210 (232)
                      .|+|.+.+...........+.+...|.+..  .+.......|+.+.|.|.+ .|.|.+.+.|++++..+...      ..
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~  167 (308)
T 4fom_A           88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNET  167 (308)
T ss_dssp             EEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSC
T ss_pred             EEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeec
Confidence            999999886443355666677766665433  3444455568899999985 68999999999998665321      11


Q ss_pred             ----EEEEEeccccCCceEEEEecC
Q psy15206        211 ----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       211 ----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                          -.+.+......|+|.|+|.|.
T Consensus       168 ~~~~s~l~i~~~~~~d~g~Y~C~a~  192 (308)
T 4fom_A          168 ATIISQYKLFPTRFARGRRITCVVK  192 (308)
T ss_dssp             EEEEEEEEECCCGGGTTCEEEEEEE
T ss_pred             ccccccceEEeeeecCCccEEEEEE
Confidence                246667778899999999874

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.76  E-value=2e-17  Score=113.58  Aligned_cols=136  Identities=14%  Similarity=0.201  Sum_probs=98.8

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE-----------------eeeeEEEEeeee-------
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK-----------------RLGRLHLAIPYT-------   64 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~-----------------~~~~~~~~~~~~-------   64 (232)
                      +..+|.|... +.. .+.+|++++|.|.+.+ +.+.+.|+|++.                 +.|.|+|.....       
T Consensus         5 ~~~~P~i~~~-p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s   81 (184)
T 2gi7_A            5 PLPKPSLQAL-PSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRYQDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPS   81 (184)
T ss_dssp             CBCCCEEEEE-SCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCEESSSEEEESSCCGGGCEEEEEEEEETTEEBCCC
T ss_pred             CCCCCeEEeC-CCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccccCcccEEEECcCChhhCceEEEEEEcCCCccCCC
Confidence            4578999887 544 8999999999999988 778999999643                 225888876331       


Q ss_pred             -cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeE
Q psy15206         65 -SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGA  140 (232)
Q Consensus        65 -~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~  140 (232)
                       .+.|.|..   +|.+.. .+ ...+.+|+.+.|.|.+.+. ++.+.|++++..+............|.|.++..+|.|.
T Consensus        82 ~~~~l~V~~~~~~p~i~~-~p-~~~v~~G~~v~l~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~  158 (184)
T 2gi7_A           82 DQLELVATGVFAKPSLSA-QP-GPAVSSGGDVTLQCQTRYG-FDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGT  158 (184)
T ss_dssp             CCEEEEEESSSCCCEEEE-EC-CCSSCCTTCEEEEEECSSC-CCEEEEEECCCCTTSCCCCEEEEESSSEEEETTCCSEE
T ss_pred             CCEEEEecCcCCCCEEEe-CC-CceecCCCcEEEEEEcCCC-CcEEEEEECCCcCcceecCCCceEEEEEccCCccCCeE
Confidence             24455532   333332 22 3456689999999998764 46899999998765433333345578899999999999


Q ss_pred             EEEEeEeCCC
Q psy15206        141 YYCVAQNGIG  150 (232)
Q Consensus       141 y~C~~~~~~~  150 (232)
                      |+|.+.|..+
T Consensus       159 Y~C~a~n~~~  168 (184)
T 2gi7_A          159 YRCYSFSSRD  168 (184)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEeCCC
Confidence            9999998643

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.75  E-value=4.2e-17  Score=118.73  Aligned_cols=150  Identities=21%  Similarity=0.317  Sum_probs=99.3

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eeeC-----CCC-----------cEEee-----CCeEEECCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAIL-----PNG-----------QTIFT-----GSTLQIPRITKED  137 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~~-----~~~-----------~~~~~-----~~~l~i~~~~~~~  137 (232)
                      +....+.+|+++.|.|.+.+ +.+.+.|++..  ....     ...           ++...     ..+|.|.+++.+|
T Consensus        34 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D  112 (270)
T 3qib_D           34 PRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGD  112 (270)
T ss_dssp             CSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGG
T ss_pred             CCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhH
Confidence            44567889999999999865 66789999832  1100     000           22211     3479999999999


Q ss_pred             CeEEEEEeEeCCC---CceeeEEEEEEEe------ccEEEec-cceeeeeccCeEEEEEEeec-CCCC-eEEEeeCCEEe
Q psy15206        138 RGAYYCVAQNGIG---RGARRKIEVKVEF------APIVTVQ-STRIGQALHHDMDLDCHIEA-YPHP-ILYWAKDGEIV  205 (232)
Q Consensus       138 ~g~y~C~~~~~~~---~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~g~~~  205 (232)
                      .|.|.|.+.+...   ........+.|..      +|.+... +....+..|+.++|.|.+.| .|.+ .+.|+|+|..+
T Consensus       113 ~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l  192 (270)
T 3qib_D          113 SALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  192 (270)
T ss_dssp             CEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             CeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEEC
Confidence            9999999986321   1122334566654      5665543 33334556999999999988 6656 79999999887


Q ss_pred             cC----------------CCeEEE----EEeccccCC-ceEEEEecC
Q psy15206        206 VN----------------DEYHSI----SNFGTSEGT-TGSLQCKVP  231 (232)
Q Consensus       206 ~~----------------~~~~~~----~~~~~~~~d-~g~Y~C~~~  231 (232)
                      ..                ++.+.+    .+......| .|.|+|.|.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~  239 (270)
T 3qib_D          193 HSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ  239 (270)
T ss_dssp             CTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEE
T ss_pred             CCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEE
Confidence            53                233433    333444455 899999874

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.75  E-value=3.3e-17  Score=115.15  Aligned_cols=146  Identities=18%  Similarity=0.181  Sum_probs=99.7

Q ss_pred             CcceEeecC--CeEEEEEEecCCCCCeEEEEeC---cEe------------------------eeeEEEEeeee-----c
Q psy15206         20 TQLSVAKEG--QSVQLECHAEGHPIPTISWRRN---FKR------------------------LGRLHLAIPYT-----S   65 (232)
Q Consensus        20 ~~~~~~~~G--~~v~l~C~~~~~p~~~~~W~~~---~~~------------------------~~~~~~~~~~~-----~   65 (232)
                      +..+.+.+|  ++++|.|.+.+ |.+.+.|++.   +..                        .|.|.|.....     .
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s   92 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS   92 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEEC
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEE
Confidence            578889999  99999999987 7789999873   321                        14677765221     2


Q ss_pred             --CceeecC--CcEEecCCCCceEeecCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCc-E-----------EeeCCe
Q psy15206         66 --PEAQVDT--PPVILNNSPQLSVAKEGQSVQLECHAEGHPI--PTISWRRENNAILPNGQ-T-----------IFTGST  127 (232)
Q Consensus        66 --~~l~v~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~-~-----------~~~~~~  127 (232)
                        +.|.|..  +|.+.........+.+|+.+.|.|.+.+.+.  +.+.|++++..+..... .           ....+.
T Consensus        93 ~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (213)
T 2x1w_L           93 IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLST  172 (213)
T ss_dssp             CCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEE
T ss_pred             EEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEE
Confidence              3455532  2333332344447889999999999987553  47999998875322111 0           112346


Q ss_pred             EEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEE
Q psy15206        128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIV  167 (232)
Q Consensus       128 l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~  167 (232)
                      |.|.++..+|+|.|+|.+.|..|. ....+.|.|..+|.+
T Consensus       173 L~I~~v~~~D~G~Y~C~a~N~~g~-~~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          173 LTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEESSCCGGGCEEEEEEEECSSCE-EEEEEEEEEEC----
T ss_pred             EEECCCCcccCEEEEEEEecCCCc-EEEEEEEEEeccccc
Confidence            999999999999999999998877 567888888877765

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.75  E-value=2.5e-17  Score=114.21  Aligned_cols=134  Identities=16%  Similarity=0.179  Sum_probs=86.7

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------------eeEEEEeee
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------------GRLHLAIPY   63 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------------~~~~~~~~~   63 (232)
                      ..+|.|... |. ..+.+|++++|.|.+.+.+. .+.|+|++..+                          |.|+|....
T Consensus         3 ~~~P~i~~~-p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A            3 LSKATLWAE-PG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             CCBCEEEEE-SC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeC-CC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeC
Confidence            458999887 54 47999999999999998665 99999954211                          467776621


Q ss_pred             e--------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE--Ee----eCC
Q psy15206         64 T--------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT--IF----TGS  126 (232)
Q Consensus        64 ~--------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~----~~~  126 (232)
                      .        .+.|.|..   +|.+.. .+ ...+.+|+.+.|.|.+.+.+ +.+.|++++..+......  ..    ...
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~i~~-~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~  156 (196)
T 2d3v_A           80 PAGWSEPSDPLELVVTGFYNKPTLSA-LP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQA  156 (196)
T ss_dssp             TTEECBCCCCEEEEEECSSCCCEEEC-------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEE
T ss_pred             CCCcCCcCccEEEEecCCCCCCeEEc-cC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCcee
Confidence            1        24556554   344332 22 24677899999999999887 889999998765321111  11    125


Q ss_pred             eEEECCCCCCCCeEEEEEeEeCC
Q psy15206        127 TLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       127 ~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .|.|.+++.+|.|.|+|.+.+..
T Consensus       157 ~L~I~~v~~~D~G~Y~C~a~n~~  179 (196)
T 2d3v_A          157 LFPVGPVTPSHRWMLRCYGSRRH  179 (196)
T ss_dssp             EEECCCCBTTBCEEEEEEEEETT
T ss_pred             EEEeeecCcccCeeEEEEEEccC
Confidence            79999999999999999999864

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.75  E-value=7.6e-18  Score=117.77  Aligned_cols=148  Identities=20%  Similarity=0.362  Sum_probs=107.9

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe-----------------------------------eee
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR-----------------------------------LGR   56 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~-----------------------------------~~~   56 (232)
                      ++.|... +.++.+.+|++++|.|.+.+.|.+.+.|++++..                                   .|.
T Consensus         4 ~~~i~~~-~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~   82 (209)
T 1nbq_A            4 SVTVHSS-EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGT   82 (209)
T ss_dssp             CCEEECS-CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSE
T ss_pred             eEEEEcC-CCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcE
Confidence            4566655 7888899999999999999989999999995422                                   146


Q ss_pred             EEEEeeee--------cCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCCCc-------
Q psy15206         57 LHLAIPYT--------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNGQ-------  120 (232)
Q Consensus        57 ~~~~~~~~--------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~-------  120 (232)
                      |.|.....        .+.|.|..+|.... ......+..|+.+.|.|.+ .+.|.+.+.|++++..+.....       
T Consensus        83 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~  161 (209)
T 1nbq_A           83 YTCMVSEEGGNSYGEVKVKLIVLVPPSKPT-VNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSN  161 (209)
T ss_dssp             EEEEEEETTSSCEECCEEECCEEBCCCCCC-CCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTT
T ss_pred             EEEEEecCCCCccceEEEEEEEecCCcCCC-cccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeec
Confidence            77766431        44556666665443 2333457789999999996 8889999999999887654321       


Q ss_pred             --EE--eeCCeEEECCCCCCCCeEEEEEeEeCCCCc-eeeEEEEEE
Q psy15206        121 --TI--FTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKV  161 (232)
Q Consensus       121 --~~--~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v  161 (232)
                        +.  ...+.|.|.++..+|.|.|+|.+.|..|.. .+..+.+.|
T Consensus       162 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          162 SSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             CCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             cceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence              11  134689999999999999999999988774 233344433

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.75  E-value=4.6e-17  Score=115.23  Aligned_cols=150  Identities=19%  Similarity=0.319  Sum_probs=99.6

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eee--C---------------CCCcEEee------CCeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAI--L---------------PNGQTIFT------GSTLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~--~---------------~~~~~~~~------~~~l~i~~~~  134 (232)
                      ....+.+|+.+.|.|.+.+.+  .+.+.|++..  ..+  .               ...++...      ..+|.|.+++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR   87 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence            345677999999999998755  4679999853  111  0               11233322      2379999999


Q ss_pred             CCCCeEEEEEeEeCCC---C--ceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEee-CC
Q psy15206        135 KEDRGAYYCVAQNGIG---R--GARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWAK-DG  202 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~---~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~-~g  202 (232)
                      .+|.|.|.|.+.+..+   .  .......|.|.    .+|.+...+....+..|+.+.|.|.+.+. |.+ .+.|++ +|
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g  167 (223)
T 1dee_B           88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNN  167 (223)
T ss_dssp             GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTS
T ss_pred             HHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCC
Confidence            9999999999987642   1  11133466665    35565543222235689999999999887 776 899999 88


Q ss_pred             EEecC---------CCeEE----EEEecccc--CCceEEEEecC
Q psy15206        203 EIVVN---------DEYHS----ISNFGTSE--GTTGSLQCKVP  231 (232)
Q Consensus       203 ~~~~~---------~~~~~----~~~~~~~~--~d~g~Y~C~~~  231 (232)
                      ..+..         +..|.    +.+.....  .|.|.|+|.|.
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~  211 (223)
T 1dee_B          168 SDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQ  211 (223)
T ss_dssp             CBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEE
T ss_pred             CccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEE
Confidence            76532         23332    33444443  67899999974

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.74  E-value=5e-17  Score=112.70  Aligned_cols=135  Identities=19%  Similarity=0.260  Sum_probs=95.9

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe--------------------------eeeEEEEeee
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR--------------------------LGRLHLAIPY   63 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~--------------------------~~~~~~~~~~   63 (232)
                      ..+|.|... |.. .+.+|++++|.|.+.+ +.+.+.|+|++..                          .|.|+|....
T Consensus         3 ~~~P~i~~~-p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 3p2t_A            3 LPKPTLWAE-PGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRS   79 (196)
T ss_dssp             BCCCEEEEE-SCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEcc-CCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeC
Confidence            357888887 555 8999999999999998 7789999995432                          1467776422


Q ss_pred             e--------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE-----EeeCCe
Q psy15206         64 T--------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT-----IFTGST  127 (232)
Q Consensus        64 ~--------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-----~~~~~~  127 (232)
                      .        .+.|.|..   +|.+.. .+. ..+.+|+.+.|.|.+.+ +++.+.|++++..+......     ....+.
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~~~~-~~~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~  156 (196)
T 3p2t_A           80 PVGWSQPSDPLELVMTGAYSKPTLSA-LPS-PLVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAE  156 (196)
T ss_dssp             TTEEBCCCCCEEEEEECSSCCCEEEE-ESC-SEECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEE
T ss_pred             CCcccCCCccEEEEecCCCCCCEEEe-CCc-ceecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceE
Confidence            1        33445532   233332 222 25678999999999977 44579999998765432211     223567


Q ss_pred             EEECCCCCCCCeEEEEEeEeCCC
Q psy15206        128 LQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       128 l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      |.|.++..+|.|.|+|.+.|..+
T Consensus       157 L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          157 FPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEECSCCGGGCEEEEEEEECGGG
T ss_pred             EEeCCCcccCCCeEEEEEEcCCC
Confidence            99999999999999999998754

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.74  E-value=4.6e-17  Score=119.11  Aligned_cols=152  Identities=22%  Similarity=0.338  Sum_probs=100.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee-------------C----CCCcEEee-----CCeEEECCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI-------------L----PNGQTIFT-----GSTLQIPRITK  135 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~-------------~----~~~~~~~~-----~~~l~i~~~~~  135 (232)
                      .+....+.+|+++.|.|.+.+.+.+.+.|++...  ..             .    ...++...     ..+|.|.+++.
T Consensus        30 ~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~  109 (279)
T 2wbj_D           30 HPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHP  109 (279)
T ss_dssp             ECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCG
T ss_pred             CCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCc
Confidence            3556778899999999999887778899998641  10             0    01233222     23799999999


Q ss_pred             CCCeEEEEEeEeCCC----C-ceeeEEEEEEEe------ccEEEec-cceeeeeccCeEEEEEEeecC-CC-CeEEEeeC
Q psy15206        136 EDRGAYYCVAQNGIG----R-GARRKIEVKVEF------APIVTVQ-STRIGQALHHDMDLDCHIEAY-PH-PILYWAKD  201 (232)
Q Consensus       136 ~~~g~y~C~~~~~~~----~-~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~  201 (232)
                      +|.|.|.|.+.+..+    . .......+.|..      +|.+... +....+..|+.+.|.|.+.|. |. +.+.|++|
T Consensus       110 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~  189 (279)
T 2wbj_D          110 EDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  189 (279)
T ss_dssp             GGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEEEEEET
T ss_pred             cCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEEEEEEC
Confidence            999999999998421    0 012234566653      5666543 333334578999999999987 43 58999999


Q ss_pred             CEEecC----------------CCeEE----EEEeccccC-CceEEEEecC
Q psy15206        202 GEIVVN----------------DEYHS----ISNFGTSEG-TTGSLQCKVP  231 (232)
Q Consensus       202 g~~~~~----------------~~~~~----~~~~~~~~~-d~g~Y~C~~~  231 (232)
                      |..+..                +..|.    +.+...... |.|.|+|.|.
T Consensus       190 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~  240 (279)
T 2wbj_D          190 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQ  240 (279)
T ss_dssp             TEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEE
T ss_pred             CEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEE
Confidence            987643                12232    333333333 4678999974

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.74  E-value=1.1e-16  Score=109.82  Aligned_cols=133  Identities=18%  Similarity=0.283  Sum_probs=98.4

Q ss_pred             cceEeecCCeEEEEEEecCCCCCeEEEEeCcEe--------------------------------------------eee
Q psy15206         21 QLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR--------------------------------------------LGR   56 (232)
Q Consensus        21 ~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~--------------------------------------------~~~   56 (232)
                      ..+.+.+|++++|.|.+.+.|.+.+.|++++..                                            .|.
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~   82 (184)
T 2ny1_B            3 KVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT   82 (184)
T ss_dssp             CEEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred             CcEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence            456789999999999999888999999996421                                            024


Q ss_pred             EEEEeeee--cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCC
Q psy15206         57 LHLAIPYT--SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRIT  134 (232)
Q Consensus        57 ~~~~~~~~--~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~  134 (232)
                      |.|.....  .+.|.|..   . . .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+      ......|.|.++.
T Consensus        83 Y~C~~~~~~~~~~l~V~~---~-~-~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i~~v~  151 (184)
T 2ny1_B           83 YICEVEDQKEEVQLLVFG---L-T-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVSQLE  151 (184)
T ss_dssp             EEEEETTEEEEEEEEEEE---E-E-ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------EEESSEEEESSCC
T ss_pred             EEEEEEcCCCcEEEEEEE---e-c-CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------ccCceEEEEecCC
Confidence            45544221  34444442   1 1 133346779999999999988899999999987554      3456789999999


Q ss_pred             CCCCeEEEEEeEeCCCCceeeEEEEEEEecc
Q psy15206        135 KEDRGAYYCVAQNGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  165 (232)
                      .+|.|.|+|.+.+..+. ....+.+.|...|
T Consensus       152 ~~d~G~Y~C~a~n~~~~-~~~~~~l~V~~~p  181 (184)
T 2ny1_B          152 LQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQ  181 (184)
T ss_dssp             GGGCEEEEEEEEETTEE-EEEEEEEEEECCC
T ss_pred             cCCCeEEEEEEEECCce-EEEEEEEEEEecC
Confidence            99999999999986655 5566777776554

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.74  E-value=9.5e-18  Score=117.66  Aligned_cols=143  Identities=18%  Similarity=0.271  Sum_probs=99.3

Q ss_pred             CcceEeecCCeEEEEEEecCCC----CCeEEEEeCc----------------E---------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP----IPTISWRRNF----------------K---------------------------   52 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p----~~~~~W~~~~----------------~---------------------------   52 (232)
                      +..+.+.+|++++|.|.+.+.+    .+.+.|++..                .                           
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            5678899999999999999866    4699999821                0                           


Q ss_pred             --------eeeeEEEEeee------ecCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCee--e
Q psy15206         53 --------RLGRLHLAIPY------TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNA--I  115 (232)
Q Consensus        53 --------~~~~~~~~~~~------~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~--~  115 (232)
                              +.|.|.|....      ..+.|.|..+|.... ......+..|+.+.|.|.+ .+.|.+.+.|++++..  +
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~-~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~  165 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTR-CFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM  165 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCE-EEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCC
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCce-eeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCcc
Confidence                    11356665522      155666666554322 1112235679999999999 7889999999996432  2


Q ss_pred             CCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEec
Q psy15206        116 LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFA  164 (232)
Q Consensus       116 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~  164 (232)
                      ..........+.|.|.++..+|.|.|+|.+.|..|. ....+.|.|..+
T Consensus       166 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~-~~~~~~l~V~~P  213 (214)
T 3jz7_A          166 PTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGS-DQCMLRLDVVPP  213 (214)
T ss_dssp             CGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEECCBCC
T ss_pred             CccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCc-EEEEEEEEEeCC
Confidence            211122223568999999999999999999998877 456666666533

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.74  E-value=7.5e-18  Score=123.85  Aligned_cols=149  Identities=19%  Similarity=0.218  Sum_probs=107.5

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      +|.+.. .+....+.+|+.+.|.|.+.+.    +.|++++...   .....  ..+.|.|.++...|.|.|+|.+.+..+
T Consensus         4 ~P~i~~-~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~   75 (292)
T 4dkd_C            4 IPVIEP-SVPELVVKPGATVTLRCVGNGS----VEWDGPPSPH---WTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPL   75 (292)
T ss_dssp             CCEEES-CCSSCEECTTCCEEEEEECSSC----CCBCCCCCSS---CEECCBTTEEEEEESSCCGGGCSCEEECCCC---
T ss_pred             CceecC-CCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCc---eEEeccCceEEEEEcccccccCEEEEEEEccCCC
Confidence            455543 5566788899999999999773    8999765321   11111  124899999999999999999998766


Q ss_pred             CceeeEEEEEEEeccE-EEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeC-CEEecCCCeE------EEEEecccc
Q psy15206        151 RGARRKIEVKVEFAPI-VTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKD-GEIVVNDEYH------SISNFGTSE  220 (232)
Q Consensus       151 ~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~-g~~~~~~~~~------~~~~~~~~~  220 (232)
                      . ....+.+.|..+|. +...+....+..|+.+.|.|.+.+ |.  +.+.|+++ +..+....++      .+.+.++..
T Consensus        76 ~-~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  153 (292)
T 4dkd_C           76 G-GSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKF  153 (292)
T ss_dssp             --CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCG
T ss_pred             C-cceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCCCH
Confidence            5 36677788877765 355566778889999999999987 54  67999997 4444333322      266777888


Q ss_pred             CCceEEEEecC
Q psy15206        221 GTTGSLQCKVP  231 (232)
Q Consensus       221 ~d~g~Y~C~~~  231 (232)
                      .|+|.|+|.+.
T Consensus       154 ~d~G~Y~C~a~  164 (292)
T 4dkd_C          154 IQSQDYQCSAL  164 (292)
T ss_dssp             GGCSEEEEEEC
T ss_pred             HHCeEEEEEEE
Confidence            99999999975

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.73  E-value=1.1e-16  Score=110.25  Aligned_cols=145  Identities=12%  Similarity=0.165  Sum_probs=98.1

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------------eeEEEEeeee
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------------GRLHLAIPYT   64 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------------~~~~~~~~~~   64 (232)
                      .+|.|... |.. .+.+|++|+|.|.+.+ +...+.|+|++...                          |.|+|.....
T Consensus         3 ~~P~i~~~-p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~   79 (188)
T 1oll_A            3 PKPFIWAE-PHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   79 (188)
T ss_dssp             CCCEEEEE-SCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCEEEee-cCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCC
Confidence            47899887 555 8999999999999976 45789999965321                          4677765221


Q ss_pred             --------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCC
Q psy15206         65 --------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRI  133 (232)
Q Consensus        65 --------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~  133 (232)
                              .+.|.|..   +|.+.. .+ ...+.+|+.+.|.|.+.+ +.+.+.|++++..+............|.|.++
T Consensus        80 ~~~~~~s~~~~l~V~~~~~~p~i~~-~p-~~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v  156 (188)
T 1oll_A           80 ELWSEPSNLLDLVVTEMYDTPTLSV-HP-GPEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPV  156 (188)
T ss_dssp             TEECCCCCCEEEEEESCSCCCEEEE-ES-CSEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEEC
T ss_pred             CCCCCCCCceEEEecccCCCCeEEE-CC-CCccccCCEEEEEEEcCC-CCCEEEEEECCccccccccCCCceeEEEECCC
Confidence                    23455542   344332 22 345779999999999865 45689999998665321111123457999999


Q ss_pred             CCCCCeEEEEEeEeCCC--CceeeEEEEEE
Q psy15206        134 TKEDRGAYYCVAQNGIG--RGARRKIEVKV  161 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~--~~~~~~~~l~v  161 (232)
                      +.+|.|.|+|.+.+...  ...+..+.|.|
T Consensus       157 ~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V  186 (188)
T 1oll_A          157 TTAHRGTYRCFGSYNNHAWSFPSEPVKLLV  186 (188)
T ss_dssp             CGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred             CcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence            99999999999987531  22344455554

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.73  E-value=1.8e-17  Score=117.65  Aligned_cols=149  Identities=21%  Similarity=0.387  Sum_probs=96.6

Q ss_pred             CceEeecCCcEEEEeeeccCCC----CeEEEEeCC--eee----C------------CCCcEEee------CCeEEECCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPI----PTISWRREN--NAI----L------------PNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~----~~~~W~~~~--~~~----~------------~~~~~~~~------~~~l~i~~~  133 (232)
                      ....+.+|+.+.|.|.+.+.+.    +.+.|++..  ..+    .            ...++...      ..+|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   87 (228)
T 3bae_H            8 GPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSV   87 (228)
T ss_dssp             CCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSC
T ss_pred             CceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCC
Confidence            3456778999999999988664    789999852  211    0            01233221      247999999


Q ss_pred             CCCCCeEEEEEeEeCCC------C--ceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEe
Q psy15206        134 TKEDRGAYYCVAQNGIG------R--GARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWA  199 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~------~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~  199 (232)
                      +.+|.|.|.|.+.+..+      .  .......|.|.    .+|.+...+....+..|+.+.|.|.+.|. |.+ .+.|+
T Consensus        88 ~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~  167 (228)
T 3bae_H           88 DTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN  167 (228)
T ss_dssp             CGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEe
Confidence            99999999999988643      1  11123566665    35666554433345689999999999886 777 89999


Q ss_pred             eCCEEec--------CCCeE----EEEEeccccCCceEEEEecC
Q psy15206        200 KDGEIVV--------NDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       200 ~~g~~~~--------~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++|..+.        ..+.+    .+.+......| |.|+|.|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~  210 (228)
T 3bae_H          168 SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVA  210 (228)
T ss_dssp             GGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEE
T ss_pred             eCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEE
Confidence            9876421        11222    23444444444 99999874

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.73  E-value=1.2e-16  Score=114.78  Aligned_cols=133  Identities=19%  Similarity=0.307  Sum_probs=96.2

Q ss_pred             CcceEeecCCeEEEEEEecC---CCCCeEEEEeCcEee------------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEG---HPIPTISWRRNFKRL------------------------------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~---~p~~~~~W~~~~~~~------------------------------------------   54 (232)
                      +.++.+.+|++++|.|.+.+   .+.+.+.|++++...                                          
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   88 (250)
T 2fbo_J            9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLA   88 (250)
T ss_dssp             CSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTT
T ss_pred             CCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCC
Confidence            56788999999999999986   788899999954211                                          


Q ss_pred             --------------eeEEEEeeee-----------cCceeecCC---cEEecCCCCceEeecCCcEEEEeeeccCCCCeE
Q psy15206         55 --------------GRLHLAIPYT-----------SPEAQVDTP---PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTI  106 (232)
Q Consensus        55 --------------~~~~~~~~~~-----------~~~l~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~  106 (232)
                                    |.|.|.....           .+.|.|..+   +......+....+.+|+.+.|.|.+.+.|.|.+
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v  168 (250)
T 2fbo_J           89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV  168 (250)
T ss_dssp             SCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred             cceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence                          3555555221           344666553   222223344566678999999999999898999


Q ss_pred             EEEeCCeeeCCC------------------------CcEEe-eCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206        107 SWRRENNAILPN------------------------GQTIF-TGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus       107 ~W~~~~~~~~~~------------------------~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      .|++++..+...                        ..... ....|.|.++..+|.|.|+|.+.|..|..
T Consensus       169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGEL  239 (250)
T ss_dssp             EEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGG
T ss_pred             EEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCcccc
Confidence            999998765331                        11111 33689999999999999999999976653

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.73  E-value=4.9e-17  Score=118.97  Aligned_cols=150  Identities=19%  Similarity=0.313  Sum_probs=100.5

Q ss_pred             CCceEeecCCcEEEEeeeccC--CCCeEEEEeCCee--eC-------C----------CCcEEee--C----CeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGH--PIPTISWRRENNA--IL-------P----------NGQTIFT--G----STLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~--~~-------~----------~~~~~~~--~----~~l~i~~~  133 (232)
                      +....+.+|+++.|.|.+.+.  +.+.+.|++....  +.       .          ..++...  .    .+|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (280)
T 3fku_X            7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL   86 (280)
T ss_dssp             CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            455678899999999999774  4567999974311  10       0          0122211  1    27999999


Q ss_pred             CCCCCeEEEEEeEeC--------CCCceeeEEEEEEEe---------------ccEEEeccceeeeeccCeEEEEEEeec
Q psy15206        134 TKEDRGAYYCVAQNG--------IGRGARRKIEVKVEF---------------APIVTVQSTRIGQALHHDMDLDCHIEA  190 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~--------~~~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~g~~~~l~C~~~~  190 (232)
                      +.+|+|.|.|.+.+.        ..........|.|..               ++.+...+. ..+..|++++|.|.+.+
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X           87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred             ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence            999999999999876        111122233455544               334444444 77889999999999988


Q ss_pred             -CC-CCeEEEeeC--CEEec---------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        191 -YP-HPILYWAKD--GEIVV---------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       191 -~p-~~~~~W~~~--g~~~~---------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                       .+ .+.+.|+|.  +..+.                     ....+.|.+.++..+|+|.|.|.+.
T Consensus       166 ~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~  231 (280)
T 3fku_X          166 NNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTW  231 (280)
T ss_dssp             CCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEe
Confidence             43 368999873  21111                     1234568888999999999999873

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.73  E-value=5.1e-17  Score=114.53  Aligned_cols=150  Identities=18%  Similarity=0.181  Sum_probs=102.3

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee----------------------------eeEEEE
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL----------------------------GRLHLA   60 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~----------------------------~~~~~~   60 (232)
                      +..+|.|... |. ..+.+|++|+|.|.+.+ +.+.|.|+|++..+                            |.|+|.
T Consensus         6 ~~~~P~i~~~-p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   82 (218)
T 1uct_A            6 DFPMPFISAK-SS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ   82 (218)
T ss_dssp             GSCCCCEEES-SC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCCCCEEEec-CC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEE
Confidence            4568999888 54 57999999999999987 67899999953211                            345555


Q ss_pred             eeee--------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEE
Q psy15206         61 IPYT--------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQ  129 (232)
Q Consensus        61 ~~~~--------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~  129 (232)
                      ....        .+.|.|..   +|.+.. .+ ...+.+|+.+.|.|...+.+.+.+.|+++|..+............|.
T Consensus        83 a~n~~~~~~~s~~~~l~V~~~~~~P~i~~-~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~  160 (218)
T 1uct_A           83 YRIGHYRFRYSDTLELVVTGLYGKPFLSA-DR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFS  160 (218)
T ss_dssp             EEETTTEEEECCCEEEEEECSSCCCEEEE-SS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEE
T ss_pred             EEcCCCceeecCCEEEEEcCcccCCEEEe-CC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEE
Confidence            4221        23455543   343332 22 34677999999999766677788999999876543211122356899


Q ss_pred             ECCCCCCCCeEEEEEeEeCCC----CceeeEEEEEEEe
Q psy15206        130 IPRITKEDRGAYYCVAQNGIG----RGARRKIEVKVEF  163 (232)
Q Consensus       130 i~~~~~~~~g~y~C~~~~~~~----~~~~~~~~l~v~~  163 (232)
                      |.+++.+|+|.|+|.+.+...    +..+..+.|.|..
T Consensus       161 I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          161 LGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTD  198 (218)
T ss_dssp             CCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC-
T ss_pred             EccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEec
Confidence            999999999999999997532    2234556666654

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.73  E-value=5.5e-17  Score=114.18  Aligned_cols=149  Identities=19%  Similarity=0.386  Sum_probs=97.6

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eee----C------------CCCcEEee------CCeEEECCCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAI----L------------PNGQTIFT------GSTLQIPRITK  135 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~----~------------~~~~~~~~------~~~l~i~~~~~  135 (232)
                      ....+.+|+++.|.|.+.+.+  .+.+.|++..  ..+    .            ...++...      ..+|.|.+++.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (215)
T 1c5d_H            8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT   87 (215)
T ss_dssp             CCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCG
T ss_pred             CCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCc
Confidence            345677899999999998754  4679999863  211    0            01233221      13799999999


Q ss_pred             CCCeEEEEEeEeCCCC--ceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCEEec-
Q psy15206        136 EDRGAYYCVAQNGIGR--GARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEIVV-  206 (232)
Q Consensus       136 ~~~g~y~C~~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~~~-  206 (232)
                      +|+|.|.|.+.+..+.  .......|.|.    .+|.+...+....+..|+.+.|.|.+.|. |.+ .+.|+++|..+. 
T Consensus        88 ~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~  167 (215)
T 1c5d_H           88 EDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDV  167 (215)
T ss_dssp             GGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSC
T ss_pred             ccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCce
Confidence            9999999999876321  12233566665    24566544333345679999999999887 777 899999886432 


Q ss_pred             -------CCCeEEEE--EeccccCCceEEEEecC
Q psy15206        207 -------NDEYHSIS--NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 -------~~~~~~~~--~~~~~~~d~g~Y~C~~~  231 (232)
                             ..+.+.+.  +......| |.|+|.|.
T Consensus       168 ~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~  200 (215)
T 1c5d_H          168 HTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVA  200 (215)
T ss_dssp             CBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEE
T ss_pred             EecCcccCCCCEEEEEEEecccCCC-CeEEEEEE
Confidence                   11344432  22222245 99999874

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.72  E-value=2.4e-16  Score=112.13  Aligned_cols=149  Identities=17%  Similarity=0.308  Sum_probs=94.0

Q ss_pred             ceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eee--C--------------CCCcEEee------CCeEEECCCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAI--L--------------PNGQTIFT------GSTLQIPRITKE  136 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~--~--------------~~~~~~~~------~~~l~i~~~~~~  136 (232)
                      ...+.+|+++.|.|.+.+.+  .+.+.|++..  ..+  .              ...++...      ..+|.|.+++.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (232)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence            35677899999999997754  5679999853  211  0              12233322      127999999999


Q ss_pred             CCeEEEEEeEeCC--CC---ceeeEEEEEEEe----ccEEEeccceeeeecc-CeEEEEEEeecC-CCC-eEEEee-CCE
Q psy15206        137 DRGAYYCVAQNGI--GR---GARRKIEVKVEF----APIVTVQSTRIGQALH-HDMDLDCHIEAY-PHP-ILYWAK-DGE  203 (232)
Q Consensus       137 ~~g~y~C~~~~~~--~~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~~-~~~W~~-~g~  203 (232)
                      |.|.|.|.+.+..  +.   .......|.|..    +|.+........+..| +.++|.|.+.++ |.+ .+.|++ ||.
T Consensus        89 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~  168 (232)
T 1dn0_B           89 DTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNS  168 (232)
T ss_dssp             GCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSC
T ss_pred             cCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCC
Confidence            9999999998421  11   122334666654    3555433222234467 899999999886 776 899999 887


Q ss_pred             EecC---------CCeEE----EEEecccc--CCceEEEEecC
Q psy15206        204 IVVN---------DEYHS----ISNFGTSE--GTTGSLQCKVP  231 (232)
Q Consensus       204 ~~~~---------~~~~~----~~~~~~~~--~d~g~Y~C~~~  231 (232)
                      .+..         .+.|.    +.+.....  .|.|.|+|.|.
T Consensus       169 ~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~  211 (232)
T 1dn0_B          169 DISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQ  211 (232)
T ss_dssp             EECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEE
T ss_pred             ceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEE
Confidence            6532         23333    34444444  57899999874

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.72  E-value=1.4e-16  Score=127.90  Aligned_cols=150  Identities=19%  Similarity=0.339  Sum_probs=104.2

Q ss_pred             CceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeC-------------CCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         82 QLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAIL-------------PNGQTIFTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~-------------~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      ....+..|+++.|.|.+ .+.+.+.+.|++++..+.             ........+++|.|.+++.+|.|.|+|.+.+
T Consensus       374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred             cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence            34567889999999998 778888999999875221             1112233456899999999999999999999


Q ss_pred             CCCCceeeEEEEEEEeccEE-EeccceeeeeccCe-EEEEEEeec-CCCCeEEEeeCCEEecCCC-eE------------
Q psy15206        148 GIGRGARRKIEVKVEFAPIV-TVQSTRIGQALHHD-MDLDCHIEA-YPHPILYWAKDGEIVVNDE-YH------------  211 (232)
Q Consensus       148 ~~~~~~~~~~~l~v~~~p~~-~~~~~~~~~~~g~~-~~l~C~~~~-~p~~~~~W~~~g~~~~~~~-~~------------  211 (232)
                      ..+......+.|.|..+|.. .+......+..++. +.|.|.+.+ +|.+.++|++||..+.... .+            
T Consensus       454 ~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~  533 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPET  533 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTT
T ss_pred             CCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCC
Confidence            87774467788888764421 22222223445554 466999988 6999999999998875322 11            


Q ss_pred             -------EEEEeccc-cCCceEEEEecC
Q psy15206        212 -------SISNFGTS-EGTTGSLQCKVP  231 (232)
Q Consensus       212 -------~~~~~~~~-~~d~g~Y~C~~~  231 (232)
                             .+.+..+. ..+.|.|+|.|+
T Consensus       534 g~y~~~s~L~i~~~~~~d~~~~y~C~~~  561 (581)
T 3o3u_N          534 GLFTLQSELMVTPARGGDPRPTFSCSFS  561 (581)
T ss_dssp             CCEEEEEEEEECCCTTSCSCCCEEEEEE
T ss_pred             ceEEEEEEEEEEeccccCCCceEEEEEe
Confidence                   23333344 344788999874

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.72  E-value=2.3e-16  Score=113.78  Aligned_cols=151  Identities=21%  Similarity=0.348  Sum_probs=97.9

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee------CC---------CC-cEEeeCCe---EEECCCCCCCCe
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI------LP---------NG-QTIFTGST---LQIPRITKEDRG  139 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~------~~---------~~-~~~~~~~~---l~i~~~~~~~~g  139 (232)
                      +....+.+|+++.|.|...+.+.+.+.|++..  ...      ..         .. ++......   |.|.+++.+|+|
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG   87 (253)
T 3to4_D            8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR   87 (253)
T ss_dssp             CSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCE
T ss_pred             CCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCe
Confidence            45567889999999999888788889999831  110      00         01 22221111   999999999999


Q ss_pred             EEEEEeEeCCC---C--ceeeEEEEEEE------eccEEEecc-ceeeeeccCeEEEEEEeec-CCCC-eEEEeeCCEEe
Q psy15206        140 AYYCVAQNGIG---R--GARRKIEVKVE------FAPIVTVQS-TRIGQALHHDMDLDCHIEA-YPHP-ILYWAKDGEIV  205 (232)
Q Consensus       140 ~y~C~~~~~~~---~--~~~~~~~l~v~------~~p~~~~~~-~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~g~~~  205 (232)
                      .|.|.+.+..+   .  .......+.|.      .+|.+...+ ....+..|+.++|.|.+.| .|.+ .+.|+++|..+
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l  167 (253)
T 3to4_D           88 TLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  167 (253)
T ss_dssp             EEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             EEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEEC
Confidence            99999986532   1  11223355554      456655432 2223345789999999988 5666 79999999887


Q ss_pred             cC----------------CCeE----EEEEeccccCC-ceEEEEecC
Q psy15206        206 VN----------------DEYH----SISNFGTSEGT-TGSLQCKVP  231 (232)
Q Consensus       206 ~~----------------~~~~----~~~~~~~~~~d-~g~Y~C~~~  231 (232)
                      ..                +..|    .+.+......| .|.|+|.|.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~  214 (253)
T 3to4_D          168 HSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ  214 (253)
T ss_dssp             CTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEE
T ss_pred             CCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEE
Confidence            53                2334    33344444455 779999874

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.72  E-value=9.3e-17  Score=115.77  Aligned_cols=182  Identities=16%  Similarity=0.138  Sum_probs=100.8

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe----------------------------eeeEEEEe
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR----------------------------LGRLHLAI   61 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~----------------------------~~~~~~~~   61 (232)
                      ..+|.|... |. ..+.+|++|+|.|.+.+ +...|.|+|++..                            .|.|+|..
T Consensus         5 ~~kP~i~~~-P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   81 (257)
T 1b6u_A            5 HRKPSLLAH-PG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG   81 (257)
T ss_dssp             CCCCEECCB-SC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred             CCCCEEEEc-CC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeE
Confidence            458889877 44 67899999999999985 5679999995321                            14677765


Q ss_pred             eee-----------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE-E----
Q psy15206         62 PYT-----------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT-I----  122 (232)
Q Consensus        62 ~~~-----------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~----  122 (232)
                      .+.           .+.|.|..   +|.+.. .+. ..+.+|+++.|.|.+.+. .+.+.|+++|..+...... .    
T Consensus        82 ~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~-~p~-~~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~  158 (257)
T 1b6u_A           82 SVTHSPYQLSAPSDPLDIVITGLYEKPSLSA-QPG-PTVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVNG  158 (257)
T ss_dssp             ECSSCTTSCCCCCCCEEEEEECSSCCCEEEC-SSC-TTCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSSS
T ss_pred             eccCCCccccccCCCEEEecccCCCCcceEc-cCC-CccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccCC
Confidence            321           22455542   233332 222 356789999999998765 4689999998765322111 1    


Q ss_pred             eeCCeEEECCCCCCCCeEEEEEeEeCC----CCceeeEEEEEEEeccEEEec-cceeeeeccCeEEEEEEeecCCCCeEE
Q psy15206        123 FTGSTLQIPRITKEDRGAYYCVAQNGI----GRGARRKIEVKVEFAPIVTVQ-STRIGQALHHDMDLDCHIEAYPHPILY  197 (232)
Q Consensus       123 ~~~~~l~i~~~~~~~~g~y~C~~~~~~----~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~  197 (232)
                      .....|.|.+++  |.|.|+|.+.+..    ....+..+.+.|..+|..... +.......|..+.|.|.+ |.+.+.+.
T Consensus       159 ~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~  235 (257)
T 1b6u_A          159 TFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEE  235 (257)
T ss_dssp             CCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC---------------------------------
T ss_pred             ceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE-cchHHHHH
Confidence            124578999998  9999999998642    223456778888887765421 112234568889999887 66667788


Q ss_pred             Eee
Q psy15206        198 WAK  200 (232)
Q Consensus       198 W~~  200 (232)
                      |.-
T Consensus       236 ~~~  238 (257)
T 1b6u_A          236 DLN  238 (257)
T ss_dssp             ---
T ss_pred             Hhh
Confidence            864

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.72  E-value=1.2e-16  Score=115.59  Aligned_cols=150  Identities=22%  Similarity=0.376  Sum_probs=99.1

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eee------C-----------CCCcEEee------CCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAI------L-----------PNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~------~-----------~~~~~~~~------~~~l~i~~~  133 (232)
                      +....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..+      .           ...++...      ..+|.|.++
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   92 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL   92 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence            4556788999999999998765  5789999863  211      0           01233221      247999999


Q ss_pred             CCCCCeEEEEEeEeCCCCc--eeeEEEEEEEe----ccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCEEe
Q psy15206        134 TKEDRGAYYCVAQNGIGRG--ARRKIEVKVEF----APIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEIV  205 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~~  205 (232)
                      +.+|.|.|.|.+.+..+..  ......|.|..    +|.+...+....+..|+.++|.|.+.+. |.+ .+.|++++..+
T Consensus        93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~  172 (261)
T 2xqy_G           93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSS  172 (261)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred             CcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCcC
Confidence            9999999999999853211  11234666653    4665543333345679999999999885 766 89999988643


Q ss_pred             cC--------CCeE----EEEEeccccCCceEEEEecC
Q psy15206        206 VN--------DEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       206 ~~--------~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..        .+.+    .|.+......| |.|+|.|.
T Consensus       173 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~  209 (261)
T 2xqy_G          173 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVA  209 (261)
T ss_dssp             TEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEE
T ss_pred             ceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEE
Confidence            20        1222    34455555556 99999874

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.72  E-value=1e-16  Score=116.38  Aligned_cols=162  Identities=16%  Similarity=0.244  Sum_probs=95.5

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEec---CCCCCeEEEEeCcE------------------------------------
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAE---GHPIPTISWRRNFK------------------------------------   52 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~---~~p~~~~~W~~~~~------------------------------------   52 (232)
                      .|.+... +.++.+.+|++++|.|.+.   +.+.+.+.|+++..                                    
T Consensus         5 ~~~v~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   83 (268)
T 3mj6_A            5 LPGLTVS-SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHND   83 (268)
T ss_dssp             --------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTB
T ss_pred             ccccccC-CCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCE
Confidence            3455555 7788999999999999998   56778899999321                                    


Q ss_pred             -----------eeeeEEEEeeee--------cCceeecCCcEEecCCCCceEeecCCcEEEEeee---ccCCCCeEEEEe
Q psy15206         53 -----------RLGRLHLAIPYT--------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA---EGHPIPTISWRR  110 (232)
Q Consensus        53 -----------~~~~~~~~~~~~--------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~~~W~~  110 (232)
                                 +.|.|.|.....        .+.|.|.      ...+....+.+|+.+.|.|.+   .+.|.+.+.|++
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~------~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~  157 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL------PEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF  157 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE------CCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe------ccCCCccccccCCcEEEEEEecCCCCCCccceEEEe
Confidence                       113566655322        1222221      123456778899999999999   567888999999


Q ss_pred             CCeeeCCC----------------------CcEE------eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        111 ENNAILPN----------------------GQTI------FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       111 ~~~~~~~~----------------------~~~~------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      ++......                      .+..      .....|.|.++..+|.|.|+|.+.|..+. ....+.|.|.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~  236 (268)
T 3mj6_A          158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLE-SRKTIVLHVV  236 (268)
T ss_dssp             ECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             cCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCce-EEEEEEEEEE
Confidence            53221100                      0111      12468999999999999999999997665 5667777774


Q ss_pred             -eccEEEeccceeeeeccCe
Q psy15206        163 -FAPIVTVQSTRIGQALHHD  181 (232)
Q Consensus       163 -~~p~~~~~~~~~~~~~g~~  181 (232)
                       .+|.+...+....+..|+.
T Consensus       237 ~~~p~~~~~p~~~~~~~~q~  256 (268)
T 3mj6_A          237 QDEFQRTISPTPPTDKGQQG  256 (268)
T ss_dssp             CC------------------
T ss_pred             cCCCeeeeCCCCCCCCccee
Confidence             4666666666655555543

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.71  E-value=1.9e-16  Score=114.22  Aligned_cols=148  Identities=20%  Similarity=0.346  Sum_probs=94.9

Q ss_pred             CceEeecCCcEEEEeeeccC--CCCeEEEEeCCe--e---e---C-----------CCCcEEee------CCeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGH--PIPTISWRRENN--A---I---L-----------PNGQTIFT------GSTLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~--~---~---~-----------~~~~~~~~------~~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.+.  +...+.|++...  .   +   .           ...++...      ..+|.|.+++
T Consensus         8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   87 (253)
T 3liz_H            8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLK   87 (253)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCC
T ss_pred             CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCC
Confidence            34567789999999998763  345799998421  1   0   0           01122211      1249999999


Q ss_pred             CCCCeEEEEEeEeCC---CCceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeec-CCCC-eEEEeeCCEE-
Q psy15206        135 KEDRGAYYCVAQNGI---GRGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHP-ILYWAKDGEI-  204 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~---~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~~~W~~~g~~-  204 (232)
                      .+|+|.|.|.+.+..   .........+.|.    .+|.+...+....+..|+.+.|.|.+.+ .|.+ .+.|+++|.. 
T Consensus        88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~  167 (253)
T 3liz_H           88 SEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS  167 (253)
T ss_dssp             GGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred             hhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeec
Confidence            999999999998752   1112233456664    4666665444445667999999999988 6666 8999999862 


Q ss_pred             --------ecCCCeE----EEEEeccccCCceEEEEecC
Q psy15206        205 --------VVNDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       205 --------~~~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                              ... +.|    .+.+......| |.|+|.|.
T Consensus       168 ~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~  204 (253)
T 3liz_H          168 GVHTFPAVLQS-DLYTLSSSVTVPSSTWPS-ETVTCNVA  204 (253)
T ss_dssp             TEEECCCEEET-TEEEEEEEEEEETTSTTT-SCCEEEEE
T ss_pred             ceEeCCccccC-CeEEEEEEEEEcHHHCCC-ceEEEEEE
Confidence                    222 444    34455666678 99999974

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.70  E-value=2.9e-16  Score=112.18  Aligned_cols=126  Identities=21%  Similarity=0.355  Sum_probs=86.6

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee--C-------------CCCcEEee-----CCeEEECCCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI--L-------------PNGQTIFT-----GSTLQIPRITKEDR  138 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~--~-------------~~~~~~~~-----~~~l~i~~~~~~~~  138 (232)
                      +....+.+|+.+.|.|.+. .+.+.+.|++..  ..+  .             ...++...     ..+|.|.+++.+|+
T Consensus         6 p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~   84 (238)
T 1bec_A            6 PRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQT   84 (238)
T ss_dssp             CSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGC
T ss_pred             CCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccC
Confidence            4566788999999999984 456789999864  111  0             01222221     23799999999999


Q ss_pred             eEEEEEeEeCCC----CceeeEEEEEEEe------ccEEEec-cceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCEEe
Q psy15206        139 GAYYCVAQNGIG----RGARRKIEVKVEF------APIVTVQ-STRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEIV  205 (232)
Q Consensus       139 g~y~C~~~~~~~----~~~~~~~~l~v~~------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~~  205 (232)
                      |.|.|.+.+..+    ........|.|..      +|.+... +....+..|+.+.|.|.+.|. |.+ .+.|+|||..+
T Consensus        85 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~  164 (238)
T 1bec_A           85 SVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEV  164 (238)
T ss_dssp             EEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEE
T ss_pred             EEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEEC
Confidence            999999997631    1112234566653      5666543 333345579999999999986 655 89999999876


Q ss_pred             cC
Q psy15206        206 VN  207 (232)
Q Consensus       206 ~~  207 (232)
                      ..
T Consensus       165 ~~  166 (238)
T 1bec_A          165 HS  166 (238)
T ss_dssp             CT
T ss_pred             CC
Confidence            53

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.70  E-value=1.1e-15  Score=110.16  Aligned_cols=126  Identities=21%  Similarity=0.351  Sum_probs=86.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee---------------CCCCcEEee-----CCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI---------------LPNGQTIFT-----GSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~---------------~~~~~~~~~-----~~~l~i~~~~~~~  137 (232)
                      .+....+.+|+++.|.|.+. .+.+.+.|++..  ...               ....++...     ..+|.|.+++.+|
T Consensus         9 ~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D   87 (252)
T 1oga_E            9 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   87 (252)
T ss_dssp             SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             cCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhh
Confidence            45667888999999999985 456789999853  110               012233332     2479999999999


Q ss_pred             CeEEEEEeEeCCC--CceeeEEEEEEE------eccEEEec-cceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCEEec
Q psy15206        138 RGAYYCVAQNGIG--RGARRKIEVKVE------FAPIVTVQ-STRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEIVV  206 (232)
Q Consensus       138 ~g~y~C~~~~~~~--~~~~~~~~l~v~------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~~~  206 (232)
                      .|.|.|.+.+...  ........+.|.      .+|.+... +....+..|+.+.|.|.+.|. |.+ .+.|+|||..+.
T Consensus        88 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~  167 (252)
T 1oga_E           88 TAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH  167 (252)
T ss_dssp             CEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             CEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECC
Confidence            9999999987521  101122345554      36666554 333344579999999999986 654 899999998764

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.70  E-value=5.9e-17  Score=116.88  Aligned_cols=148  Identities=23%  Similarity=0.361  Sum_probs=86.6

Q ss_pred             ceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eeeC-----------------CCCcEEee------CCeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAIL-----------------PNGQTIFT------GSTLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|.+.+.+  .+.+.|++..  ..+.                 ...++...      ..+|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA   88 (257)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred             CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            45677899999999998765  5679999853  1110                 11233221      23799999999


Q ss_pred             CCCeEEEEEeEeCCC----------C--ceeeEEEEEEEe----ccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEE
Q psy15206        136 EDRGAYYCVAQNGIG----------R--GARRKIEVKVEF----APIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILY  197 (232)
Q Consensus       136 ~~~g~y~C~~~~~~~----------~--~~~~~~~l~v~~----~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~  197 (232)
                      +|.|.|.|.+.+..+          .  .......|.|..    +|.+........+..|+.++|.|.+.|+ |.+ .|.
T Consensus        89 ~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~  168 (257)
T 3bn9_D           89 EDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS  168 (257)
T ss_dssp             GGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEEE
T ss_pred             hhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEE
Confidence            999999999998653          1  111234666653    4665543332345679999999999886 777 899


Q ss_pred             EeeCCEEe---------cCCCeEEE----EEeccccCCceEEEEecC
Q psy15206        198 WAKDGEIV---------VNDEYHSI----SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       198 W~~~g~~~---------~~~~~~~~----~~~~~~~~d~g~Y~C~~~  231 (232)
                      |+++|..+         ..++.|.+    .+......| |.|+|.|.
T Consensus       169 W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~  214 (257)
T 3bn9_D          169 WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  214 (257)
T ss_dssp             ETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEE
T ss_pred             EeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEE
Confidence            99998642         12233432    333334346 99999874

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.70  E-value=6e-16  Score=113.59  Aligned_cols=144  Identities=13%  Similarity=0.165  Sum_probs=101.3

Q ss_pred             eEeecCCeEEEEEEecCCCCCeEEEEeCc------------------EeeeeEEEEeeee-------cCceeecC--CcE
Q psy15206         23 SVAKEGQSVQLECHAEGHPIPTISWRRNF------------------KRLGRLHLAIPYT-------SPEAQVDT--PPV   75 (232)
Q Consensus        23 ~~~~~G~~v~l~C~~~~~p~~~~~W~~~~------------------~~~~~~~~~~~~~-------~~~l~v~~--~p~   75 (232)
                      ..+.+|++++|.|.+. .|.+.++|++..                  .+.|.|+|.....       ...+.+..  +|.
T Consensus       105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~  183 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSIN  183 (289)
T ss_dssp             EEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEETTTEEEECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCC
T ss_pred             EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecCCcCeeeeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCC
Confidence            6789999999999999 577889998842                  1226888887422       23344443  333


Q ss_pred             EecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--cEE-------eeCCeEEECCCCCCCCeEEEEEeE
Q psy15206         76 ILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTI-------FTGSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~-------~~~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      +.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++.......  ...       ...+.|.|.++..+|.|.|+|.+.
T Consensus       184 i~~-~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  262 (289)
T 3mjg_X          184 VSV-NAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVT  262 (289)
T ss_dssp             CEE-EESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEE
T ss_pred             cEE-eCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEee
Confidence            222 2333567899999999999999999999998765432111  111       123589999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEeccEEEe
Q psy15206        147 NGIGRGARRKIEVKVEFAPIVTV  169 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p~~~~  169 (232)
                      |..|. ......+.+...|....
T Consensus       263 N~~G~-~~~~~~l~v~~~~~~~~  284 (289)
T 3mjg_X          263 ESVND-HQDEKAINITVVESGHH  284 (289)
T ss_dssp             ETTTT-EEEEEEEEEEEEC----
T ss_pred             cCCCC-ceeEEEEEEEEEecCcc
Confidence            99888 66778888877666543

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.69  E-value=8e-16  Score=110.02  Aligned_cols=149  Identities=12%  Similarity=0.131  Sum_probs=101.7

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------------eeEEEEee
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------------GRLHLAIP   62 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------------~~~~~~~~   62 (232)
                      +..+|.|... |.. .+.+|++|+|.|.+.+ +...+.|+|++...                          |.|+|...
T Consensus         4 ~~~kP~i~~~-P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~   80 (242)
T 1p6f_A            4 TLPKPFIWAE-PHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYR   80 (242)
T ss_dssp             CCCCCEEEEE-SCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCCEEEee-CCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEe
Confidence            3568999888 555 8999999999999976 45689999965321                          46777652


Q ss_pred             ee--------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEEC
Q psy15206         63 YT--------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIP  131 (232)
Q Consensus        63 ~~--------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~  131 (232)
                      ..        .+.|.|..   +|.+.. .+ ...+.+|+++.|.|.+.+. .+.+.|+++|..+............|.|.
T Consensus        81 ~~~~~s~~S~~~~L~V~~~~~~P~i~~-~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~l~I~  157 (242)
T 1p6f_A           81 VGELWSEPSNLLDLVVTEMYDTPTLSV-HP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLG  157 (242)
T ss_dssp             ETTEECCCCCCEEEEEECCSCCCEEEE-ES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEEEEECSSEEEEEEE
T ss_pred             cCCccccCCcceEEEeecccCCCceEc-cC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCccccCCCceEEEEeC
Confidence            11        23444542   333332 22 2457799999999998754 45899999987543211111224579999


Q ss_pred             CCCCCCCeEEEEEeEeCC--CCceeeEEEEEEEe
Q psy15206        132 RITKEDRGAYYCVAQNGI--GRGARRKIEVKVEF  163 (232)
Q Consensus       132 ~~~~~~~g~y~C~~~~~~--~~~~~~~~~l~v~~  163 (232)
                      +++.+|.|.|+|.+.+..  ....+..+.|.|..
T Consensus       158 ~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~  191 (242)
T 1p6f_A          158 PVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG  191 (242)
T ss_dssp             ECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred             CCccccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence            999999999999998753  22345667777764

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.69  E-value=5.2e-16  Score=108.88  Aligned_cols=141  Identities=18%  Similarity=0.272  Sum_probs=92.2

Q ss_pred             CcceEeecCCeEEEEEEecCCCCC---eEEEEeCcEee------------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIP---TISWRRNFKRL------------------------------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~---~~~W~~~~~~~------------------------------------------   54 (232)
                      +..+.+.+|++++|.|.+.+.|.+   .+.|+|++...                                          
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            667889999999999999987654   48999843211                                          


Q ss_pred             ------eeEEEEeeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE
Q psy15206         55 ------GRLHLAIPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT  121 (232)
Q Consensus        55 ------~~~~~~~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~  121 (232)
                            |.|.|.....       ...+.+..++...........+..++.+.+.|.+.+.|.+.+.|++++..+......
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~  165 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSF  165 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceE
Confidence                  2444433111       112222222221111233345567889999999999999999999998765432221


Q ss_pred             E-----eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206        122 I-----FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus       122 ~-----~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      .     ...+.|.|..+...|.|.|+|.+.|..+. ....+.+.+
T Consensus       166 ~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~-~~~~~t~~v  209 (218)
T 4frw_A          166 KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLL-QDQRITHIL  209 (218)
T ss_dssp             ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCS-SCEEEEEEC
T ss_pred             ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCC-eEEEEEEEE
Confidence            1     12346999999999999999999998776 333344443

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.69  E-value=2.1e-16  Score=110.91  Aligned_cols=136  Identities=15%  Similarity=0.233  Sum_probs=92.9

Q ss_pred             CeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCc-----------------------------------------
Q psy15206         13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNF-----------------------------------------   51 (232)
Q Consensus        13 P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~-----------------------------------------   51 (232)
                      |.++.. + ++.+.+|++++|.|.+.+.+.+.+.|+|+.                                         
T Consensus         2 ~~v~~~-~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   79 (213)
T 3mj8_L            2 YTLTQP-P-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQA   79 (213)
T ss_dssp             CCBBCC-S-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             eeEEeC-C-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCCh
Confidence            444444 5 888999999999999999899999999811                                         


Q ss_pred             EeeeeEEEEeeee---------cCceeec----CCcEEecCCCCceEeecCCcEEEEeeeccC-CC-CeEEEEeCCeeeC
Q psy15206         52 KRLGRLHLAIPYT---------SPEAQVD----TPPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-PTISWRRENNAIL  116 (232)
Q Consensus        52 ~~~~~~~~~~~~~---------~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~  116 (232)
                      .+.|.|.|.....         ...|.|.    .+|.+.. .+....+..|+.+.|.|.+.+. |+ +.+.|+++|..+.
T Consensus        80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~-~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~  158 (213)
T 3mj8_L           80 GDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTL-FPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPIT  158 (213)
T ss_dssp             GGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEE-ECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             hhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEc-cCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccC
Confidence            0113566655221         3455555    4444433 2222233379999999999885 43 3899999998875


Q ss_pred             CC---------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        117 PN---------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       117 ~~---------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ..         .......+.|.|..+..+|.|.|+|.+.|..+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3mj8_L          159 QGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNT  202 (213)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred             CCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence            32         111122346889999999999999999997643

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.69  E-value=3.9e-16  Score=118.85  Aligned_cols=146  Identities=14%  Similarity=0.158  Sum_probs=99.6

Q ss_pred             eecCCcEEEEeeeccC---CC-CeEEEEeCCeeeCCCC---------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         86 AKEGQSVQLECHAEGH---PI-PTISWRRENNAILPNG---------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~---~~-~~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      +..|+.+.|.|.+.+.   |. ..+.|++++..+....         ......+.|.|..+..+|.|.|+|.+.+..+..
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  259 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  259 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCCC
Confidence            6679999999999886   32 2699999986542111         111123469999999999999999999875532


Q ss_pred             -eeeEEEE--EEEeccEEEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeCCEEecC----------CCeEE----E
Q psy15206        153 -ARRKIEV--KVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDGEIVVN----------DEYHS----I  213 (232)
Q Consensus       153 -~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g~~~~~----------~~~~~----~  213 (232)
                       ..+.+.+  .+..+|.+.+.+.......|+.++|.|.+.|+++  +.|.|+|||..+..          +..|.    +
T Consensus       260 ~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L  339 (376)
T 2aty_A          260 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKL  339 (376)
T ss_pred             ceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEE
Confidence             2222222  4456788877766655556899999999999744  47999999976532          22222    2


Q ss_pred             EEeccccCCceEEEEecC
Q psy15206        214 SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       214 ~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+......|.|.|+|.|.
T Consensus       340 ~i~~~~~~~~~~YtC~v~  357 (376)
T 2aty_A          340 NVQKSNWEAGNTFTCSVL  357 (376)
T ss_pred             EEcHHHhCCCCcEEEEEE
Confidence            223333457899999974

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.68  E-value=6.1e-16  Score=110.77  Aligned_cols=150  Identities=20%  Similarity=0.332  Sum_probs=97.1

Q ss_pred             CCCceEeecCCcEEEEeeeccC--CCCeEEEEeCC--eee---C--------------CCCcEEee------CCeEEECC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH--PIPTISWRREN--NAI---L--------------PNGQTIFT------GSTLQIPR  132 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~~---~--------------~~~~~~~~------~~~l~i~~  132 (232)
                      .+....+.+|+++.|.|.+.+.  +.+.+.|++..  ..+   .              ...++...      ..+|.|.+
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (242)
T 1hxm_B            7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN   86 (242)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred             CCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence            4566788899999999998775  55689999853  211   0              12233221      24799999


Q ss_pred             CCCCCCeEEEEEeEeCCC-C-----ceeeEEEEEEEe-------ccEEEec-cceeeeeccCeEEEEEEeecC-CC-CeE
Q psy15206        133 ITKEDRGAYYCVAQNGIG-R-----GARRKIEVKVEF-------APIVTVQ-STRIGQALHHDMDLDCHIEAY-PH-PIL  196 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~~~-~-----~~~~~~~l~v~~-------~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~~  196 (232)
                      ++.+|.|.|.|.+.+... .     .......|.|..       +|.+.+. +....+..|+.+.|.|.+.|+ |. +.+
T Consensus        87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~~~~v  166 (242)
T 1hxm_B           87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKI  166 (242)
T ss_dssp             CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEE
T ss_pred             CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECCCeEE
Confidence            999999999999987531 1     112234666664       2333222 333334569999999999886 54 689


Q ss_pred             EEeeCCE-EecC---------CCeE----EEEEeccccCCceEEEEecC
Q psy15206        197 YWAKDGE-IVVN---------DEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       197 ~W~~~g~-~~~~---------~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|+++|. .+..         ++.|    .+.+..... | |.|+|.|.
T Consensus       167 ~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~  213 (242)
T 1hxm_B          167 HWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVR  213 (242)
T ss_dssp             EEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEE
T ss_pred             EEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEE
Confidence            9999986 4421         2223    234444332 4 99999874

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.68  E-value=8e-16  Score=110.50  Aligned_cols=148  Identities=14%  Similarity=0.197  Sum_probs=94.0

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCCCCe-----EEEEeCc-----------------------------------
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPT-----ISWRRNF-----------------------------------   51 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~-----~~W~~~~-----------------------------------   51 (232)
                      .|.+.+.++..+.+.+|++++|.|.+.+.|.+.     +.|+++.                                   
T Consensus         2 ~~~v~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
T 3pv7_A            2 DLKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGD   81 (248)
T ss_dssp             CEEEECSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTB
T ss_pred             ceEEEEeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCc
Confidence            466766657778899999999999998766554     9999831                                   


Q ss_pred             ----------EeeeeEEEEeee------ecCceeecCCcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeCCe
Q psy15206         52 ----------KRLGRLHLAIPY------TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRENN  113 (232)
Q Consensus        52 ----------~~~~~~~~~~~~------~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~  113 (232)
                                .+.|.|.|....      ..+.|.|..+|.+... +. .....|..+.|.|.+.+ .|.+ .+.|++++.
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~-~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~  159 (248)
T 3pv7_A           82 ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLL-LD-QVGMKENEDKYMCESSGFYPEAINITWEKQTQ  159 (248)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEE-CC---------CEEEEEEEEEBSSCCEEEEEEECS
T ss_pred             EEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEe-cC-CccccCCCcEEEEEEccEECCCeEEEEEECCc
Confidence                      011467776522      2566777777665432 22 23345677889999998 7888 899999986


Q ss_pred             eeCC----------------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC-ceeeEEEEEE
Q psy15206        114 AILP----------------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR-GARRKIEVKV  161 (232)
Q Consensus       114 ~~~~----------------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v  161 (232)
                      .+..                ........+.|.+.....+|.|.|+|.+.|..+. .....+.|.|
T Consensus       160 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          160 KFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             SSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             cCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            3321                1111112346888889999999999999997654 3455566666

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.68  E-value=1.2e-16  Score=113.96  Aligned_cols=146  Identities=13%  Similarity=0.172  Sum_probs=94.6

Q ss_pred             eecCCcEEEEeeeccCC----CCeEEEEeCCeeeCCCC---------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC-
Q psy15206         86 AKEGQSVQLECHAEGHP----IPTISWRRENNAILPNG---------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR-  151 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~~----~~~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-  151 (232)
                      +..|+.+.|.|.+.|..    ...+.|+++|..+....         ......+.|.|.....+|.|.|.|.+.+..+. 
T Consensus        36 l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~  115 (240)
T 4acp_A           36 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA  115 (240)
T ss_dssp             HSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----
T ss_pred             cccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCc
Confidence            44699999999999864    23699999998763321         11111246777777777889999999987653 


Q ss_pred             ceeeEEEE--EEEeccEEEeccceeeeeccCeEEEEEEeecC-CCC-eEEEeeCCEEec----------CCCeEEEE---
Q psy15206        152 GARRKIEV--KVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY-PHP-ILYWAKDGEIVV----------NDEYHSIS---  214 (232)
Q Consensus       152 ~~~~~~~l--~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~~~W~~~g~~~~----------~~~~~~~~---  214 (232)
                      ...+.+.+  .+..+|.+.+.+.......|+.+.|.|.+.|+ |.+ .+.|+|||..+.          .+..|.+.   
T Consensus       116 ~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L  195 (240)
T 4acp_A          116 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKL  195 (240)
T ss_dssp             CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEE
T ss_pred             cccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEE
Confidence            22333322  23467877766554434458999999999995 443 799999998753          12333322   


Q ss_pred             -EeccccCCceEEEEecC
Q psy15206        215 -NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       215 -~~~~~~~d~g~Y~C~~~  231 (232)
                       +......+.|.|+|.|.
T Consensus       196 ~v~~~~~~~~~~ytC~V~  213 (240)
T 4acp_A          196 TVDKSRWQQGNVFSCSVM  213 (240)
T ss_dssp             EEEHHHHHTTCCEEEEEE
T ss_pred             EEChHHhCCCCEEEEEEE
Confidence             22222256899999974

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.68  E-value=6.8e-16  Score=107.64  Aligned_cols=130  Identities=20%  Similarity=0.272  Sum_probs=86.8

Q ss_pred             eecCCeEEEEEEecCCCCCeEEEEeCcEee--------------------eeEEEEeeee-c--CceeecC---------
Q psy15206         25 AKEGQSVQLECHAEGHPIPTISWRRNFKRL--------------------GRLHLAIPYT-S--PEAQVDT---------   72 (232)
Q Consensus        25 ~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~--------------------~~~~~~~~~~-~--~~l~v~~---------   72 (232)
                      +.+|++++|.|.+   |.+.|.|+|++..+                    |.|.|..... .  +.|.+..         
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~~~~v~v~~~~~~~~~~~   91 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKD   91 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESSSSCCCCEEEEEEC---------
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCCCCCCCeEEeCCCCcCCCEEEEEEecCCCCeeEEEEEEEecccccccc
Confidence            4689999999999   78899999976433                    3555553211 1  2233220         


Q ss_pred             ---------------------CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC---CcEEeeCCeE
Q psy15206         73 ---------------------PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN---GQTIFTGSTL  128 (232)
Q Consensus        73 ---------------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~l  128 (232)
                                           .+..+. ........+|+.+.|.|.  +.|.+.+.|++++..+...   ......++.|
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L  168 (204)
T 1sy6_A           92 AAKKDDAKKDDAKKDGSDGNEEMGGIT-QTPYKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHL  168 (204)
T ss_dssp             ----------------------------CCCCEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETTEE
T ss_pred             cccccccccccccccccccccccccee-cCCceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCCEE
Confidence                                 011111 111223338999999998  6788899999999887543   1233357899


Q ss_pred             EECCC-CCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206        129 QIPRI-TKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus       129 ~i~~~-~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      .|.++ ..+|+|.|+|.+.|..|...+..+.+.
T Consensus       169 ~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~  201 (204)
T 1sy6_A          169 SLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR  201 (204)
T ss_dssp             EETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred             EEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence            99999 999999999999998875444444444

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.67  E-value=2.6e-17  Score=122.89  Aligned_cols=141  Identities=15%  Similarity=0.203  Sum_probs=93.5

Q ss_pred             CcEEEEeeeccC-C-CCeEEEEeCCeeeCCCCcE---E------eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         90 QSVQLECHAEGH-P-IPTISWRRENNAILPNGQT---I------FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        90 ~~~~l~C~~~~~-~-~~~~~W~~~~~~~~~~~~~---~------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      +.+.|.|.+.+. | .+.+.|+++|..+......   .      ...+.|.|.....+|.|.|+|.+.+..+. ....+.
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~~  103 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT-FEDSTK  103 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEE-EEEEEC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCC-cceeee
Confidence            699999999885 4 3689999999876532211   1      11235677777777999999999987543 222221


Q ss_pred             EE---EEeccEEEe-ccceeeeeccCeEEEEEEeecC-CCC---eEEEeeCC-EEecC---------CCeE----EEEEe
Q psy15206        159 VK---VEFAPIVTV-QSTRIGQALHHDMDLDCHIEAY-PHP---ILYWAKDG-EIVVN---------DEYH----SISNF  216 (232)
Q Consensus       159 l~---v~~~p~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~~---~~~W~~~g-~~~~~---------~~~~----~~~~~  216 (232)
                      +.   +...|.+.. .+....+..|+.+.|.|.+.|. |.+   .|.|+|++ ..+..         +..+    .|.+.
T Consensus       104 ~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~  183 (323)
T 2wqr_A          104 KCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVG  183 (323)
T ss_dssp             CCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECC
T ss_pred             cCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEEC
Confidence            10   112344433 3444456789999999999886 455   89999975 33321         1222    56777


Q ss_pred             ccccCCceEEEEecC
Q psy15206        217 GTSEGTTGSLQCKVP  231 (232)
Q Consensus       217 ~~~~~d~g~Y~C~~~  231 (232)
                      ++...|+|.|+|.|.
T Consensus       184 ~~~~~D~G~Y~C~a~  198 (323)
T 2wqr_A          184 TRDWIEGETYQCRVT  198 (323)
T ss_dssp             HHHHHTTCCEEEEEE
T ss_pred             HHHccCCCCEEEEEE
Confidence            778899999999874

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.66  E-value=3.8e-15  Score=104.68  Aligned_cols=148  Identities=20%  Similarity=0.266  Sum_probs=105.8

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGA  153 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~  153 (232)
                      .+....+..|+.+.|.|.+.|.|.+.+.|++++..+....  +....    .+.|.|.++...|.|.|.|.+.|..|. .
T Consensus        24 ~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~-~  102 (215)
T 3mtr_A           24 GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ-E  102 (215)
T ss_dssp             CCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCE-E
T ss_pred             CCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCc-e
Confidence            4556778899999999999999999999999998876542  22222    457999999999999999999999887 4


Q ss_pred             eeEEEEEEEeccEEEeccceeeeeccCeEEEEEEee----cCCCC--eEEEeeCCEEecC---------CCeEEEEEecc
Q psy15206        154 RRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIE----AYPHP--ILYWAKDGEIVVN---------DEYHSISNFGT  218 (232)
Q Consensus       154 ~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~--~~~W~~~g~~~~~---------~~~~~~~~~~~  218 (232)
                      ...+.+.+..+|.......  ....+..+.|.|...    +.|..  .+.|.+++...-.         .....+.+.+.
T Consensus       103 ~~~~~l~v~~~P~~p~~~~--~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L  180 (215)
T 3mtr_A          103 SLEFILVQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGL  180 (215)
T ss_dssp             EEEEEEEECCCCCCCEEEE--EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECC
T ss_pred             EEEEEEEECCCCCCCcceE--EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCC
Confidence            5667777766554322111  123567789998742    33333  3788887643110         11146667788


Q ss_pred             ccCCceEEEEec
Q psy15206        219 SEGTTGSLQCKV  230 (232)
Q Consensus       219 ~~~d~g~Y~C~~  230 (232)
                      ...+.|.|+|.|
T Consensus       181 ~~~~~y~~~~~A  192 (215)
T 3mtr_A          181 KPETTYAVRLAA  192 (215)
T ss_dssp             CTTCEEEEEEEE
T ss_pred             CCCCEEEEEEEE
Confidence            889999999987

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.66  E-value=1.7e-15  Score=107.59  Aligned_cols=150  Identities=21%  Similarity=0.330  Sum_probs=95.3

Q ss_pred             CCCceEeecCCcEEEEeeeccC--CCCeEEEEeCC--ee---eC-------------CCCcEEee------CCeEEECCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH--PIPTISWRREN--NA---IL-------------PNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~---~~-------------~~~~~~~~------~~~l~i~~~  133 (232)
                      .+....+.+|+++.|.|.+.+.  +...+.|++..  ..   +.             ...++...      ..+|.|.++
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (230)
T 1ypz_F            7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL   86 (230)
T ss_dssp             SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred             cCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcC
Confidence            4556778899999999998764  45679999853  11   10             12233222      127999999


Q ss_pred             CCCCCeEEEEEeEeC--CC-CceeeEEEEEEE---------eccEEEec-cceeeeeccCeEEEEEEeecC-CC-CeEEE
Q psy15206        134 TKEDRGAYYCVAQNG--IG-RGARRKIEVKVE---------FAPIVTVQ-STRIGQALHHDMDLDCHIEAY-PH-PILYW  198 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~--~~-~~~~~~~~l~v~---------~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W  198 (232)
                      +.+|+|.|.|.+.+.  .. ........|.|.         .+|...+. +....+..|+.++|.|.+.|+ |. +.+.|
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~~v~W  166 (230)
T 1ypz_F           87 EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVIRVYW  166 (230)
T ss_dssp             CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCCEEEE
T ss_pred             ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCeEEEE
Confidence            999999999999874  11 111233466665         12332222 333334568999999999886 65 58999


Q ss_pred             ee-CCEEecC---------CCeE----EEEEeccccCCceEEEEecC
Q psy15206        199 AK-DGEIVVN---------DEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       199 ~~-~g~~~~~---------~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++ ||..+..         +..|    .+.+..... + |.|+|.|.
T Consensus       167 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~  211 (230)
T 1ypz_F          167 KEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVK  211 (230)
T ss_dssp             ECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEE
T ss_pred             EccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEE
Confidence            99 7765432         2233    234444433 4 99999874

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.66  E-value=1.6e-15  Score=94.46  Aligned_cols=91  Identities=26%  Similarity=0.496  Sum_probs=73.3

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      ||.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+....    ...|.|.++..+|.|.|+|.+.|.
T Consensus        13 pP~f~~-~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   91 (107)
T 3knb_B           13 PPCFLR-FPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA   91 (107)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEe-CCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence            455554 567788899999999999999999999999999988766554432    237999999999999999999999


Q ss_pred             CCCceeeEEEEEEEecc
Q psy15206        149 IGRGARRKIEVKVEFAP  165 (232)
Q Consensus       149 ~~~~~~~~~~l~v~~~p  165 (232)
                      .|. ....+.|.|..+|
T Consensus        92 ~G~-~~~~~~l~V~~pP  107 (107)
T 3knb_B           92 AGE-AYAAAAVTVLEPP  107 (107)
T ss_dssp             TEE-EEEEEEEEEEC--
T ss_pred             CCE-EEEEEEEEEEcCC
Confidence            887 5567778877655

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.65  E-value=1.2e-15  Score=108.04  Aligned_cols=142  Identities=12%  Similarity=0.180  Sum_probs=86.2

Q ss_pred             CcceEeecCCeEEEEEEecCCCC---CeEEEEeCcE--------------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPI---PTISWRRNFK--------------------------------------------   52 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~---~~~~W~~~~~--------------------------------------------   52 (232)
                      ..++.+.+|++++|.|.+.+.+.   ..+.|+|++.                                            
T Consensus        11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   90 (226)
T 4f80_A           11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV   90 (226)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence            45688999999999999986543   3799998431                                            


Q ss_pred             ---eeeeEEEEeeee----cCceeecCCcEEecCCCCceEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCc---E
Q psy15206         53 ---RLGRLHLAIPYT----SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQ---T  121 (232)
Q Consensus        53 ---~~~~~~~~~~~~----~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~---~  121 (232)
                         +.|.|.|.....    ...+.+..++... .......+.+|+.+.+.|.+.+ .|.|.+.|+++++.+.....   .
T Consensus        91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~-~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~  169 (226)
T 4f80_A           91 TASDSGKYLCYFQDGDFYEKALVELKVAALGS-DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVV  169 (226)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEBCCC-CCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCE
T ss_pred             chHHCeeEEEEEECCCcEEEEEEEEeecccee-cccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEE
Confidence               113555554222    2233333222211 1233345678999999999988 58899999997655432211   1


Q ss_pred             EeeCC---eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206        122 IFTGS---TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       122 ~~~~~---~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      ...++   .+.+..++.+|.|.|+|.+.|..+. ..+...+.|..
T Consensus       170 ~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~-~~~~~~v~v~e  213 (226)
T 4f80_A          170 ADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLG-LEKTASISIAD  213 (226)
T ss_dssp             ECTTSCEEEEEEEEECC----CEEEEEEETTTT-EEEEEEECCCT
T ss_pred             ECCCCcEEEEEEEEechhcCcEEEEEEEeCCCC-eEEEEEEEECC
Confidence            11122   2334467789999999999999877 55566666543

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.64  E-value=7.6e-15  Score=105.94  Aligned_cols=143  Identities=18%  Similarity=0.255  Sum_probs=92.4

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCcE--e--------------------ee--------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNFK--R--------------------LG--------------------   55 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~~--~--------------------~~--------------------   55 (232)
                      |.++.+.+|++++|.|.+.+.+  .+.+.|+|+..  .                    .+                    
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL   86 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence            6778899999999999999865  67999998310  0                    01                    


Q ss_pred             ------eEEEEeeee-----------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCC-----eEEEEe--C
Q psy15206         56 ------RLHLAIPYT-----------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP-----TISWRR--E  111 (232)
Q Consensus        56 ------~~~~~~~~~-----------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-----~~~W~~--~  111 (232)
                            .|.|.....           ...|.|..++.+.. .+....+.+|+++.|.|.+.+.+.+     .+.|++  +
T Consensus        87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~-~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~  165 (256)
T 1nqb_A           87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQ-TPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKP  165 (256)
T ss_dssp             CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEE-ECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECT
T ss_pred             ChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEe-cCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECC
Confidence                  333332111           12344544443322 3455678899999999999887765     899999  5


Q ss_pred             CeeeC------------CCCcEEe----eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206        112 NNAIL------------PNGQTIF----TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       112 ~~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      +..+.            ...++..    ....|.|.+++.+|+|.|+|.+.+...........|.|..
T Consensus       166 g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          166 GQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             TSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             CCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence            54331            0122221    1247999999999999999999875332223344555543

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.63  E-value=1.3e-14  Score=104.11  Aligned_cols=130  Identities=22%  Similarity=0.330  Sum_probs=87.7

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCcE---------------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNFK---------------------------------------------   52 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~~---------------------------------------------   52 (232)
                      +.++.+.+|++++|.|.+.+.|  .+.+.|+|+..                                             
T Consensus         9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (247)
T 2ghw_B            9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL   88 (247)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence            4668899999999999999876  67899998210                                             


Q ss_pred             ---eeeeEEEEeeee--------cCceeecCCc--------------EEecCCCCceEeecCCcEEEEeeeccCCCCeEE
Q psy15206         53 ---RLGRLHLAIPYT--------SPEAQVDTPP--------------VILNNSPQLSVAKEGQSVQLECHAEGHPIPTIS  107 (232)
Q Consensus        53 ---~~~~~~~~~~~~--------~~~l~v~~~p--------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~  107 (232)
                         +.|.|.|.....        ...|.|..++              ..+...+....+.+|+++.|.|.+.+.+.+.+.
T Consensus        89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~  168 (247)
T 2ghw_B           89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLA  168 (247)
T ss_dssp             CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred             CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEE
Confidence               012455544221        2245555431              111113445667899999999999998888999


Q ss_pred             EEe--CCeeeC------------CCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206        108 WRR--ENNAIL------------PNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       108 W~~--~~~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      |++  ++..+.            ...++...    ..+|.|.++..+|.|.|+|.+.+..
T Consensus       169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             EEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             EEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence            999  444320            01222221    2369999999999999999998753

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.63  E-value=5.5e-15  Score=105.43  Aligned_cols=133  Identities=20%  Similarity=0.303  Sum_probs=89.8

Q ss_pred             eecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE------------------------------------------
Q psy15206         15 ILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK------------------------------------------   52 (232)
Q Consensus        15 i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~------------------------------------------   52 (232)
                      +... |.++.+.+|++++|.|. .+.+.+.+.|+|+..                                          
T Consensus         3 v~q~-p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   80 (238)
T 2p1y_A            3 VTQS-PRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA   80 (238)
T ss_dssp             EEEE-CSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred             ceEC-ccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence            3444 77888999999999999 677889999998410                                          


Q ss_pred             ---eeeeEEEEeeee-----------cCceeecCCcE-----------EecCCCCceEeecCCcEEEEeeeccCCCCeEE
Q psy15206         53 ---RLGRLHLAIPYT-----------SPEAQVDTPPV-----------ILNNSPQLSVAKEGQSVQLECHAEGHPIPTIS  107 (232)
Q Consensus        53 ---~~~~~~~~~~~~-----------~~~l~v~~~p~-----------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~  107 (232)
                         +.|.|.|.....           ...|.|...+.           .+...+....+.+|+++.|.|.+.+.+.+.+.
T Consensus        81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~  160 (238)
T 2p1y_A           81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFP  160 (238)
T ss_dssp             CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEE
T ss_pred             CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEE
Confidence               012455544211           22455543321           11223455678899999999999998888999


Q ss_pred             EEeCCe--e---e---------CCCCcEEee------CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206        108 WRRENN--A---I---------LPNGQTIFT------GSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       108 W~~~~~--~---~---------~~~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      |++++.  .   +         ....++...      ...|.|.++..+|+|.|+|.+.|..
T Consensus       161 W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          161 WYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            999642  1   0         001222221      2479999999999999999999873

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.63  E-value=5.5e-15  Score=104.26  Aligned_cols=147  Identities=18%  Similarity=0.317  Sum_probs=93.5

Q ss_pred             CcceEeecCCeEEEEEEecCCCC-----CeEEEEeCcEe-----------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPI-----PTISWRRNFKR-----------------------------------------   53 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~-----~~~~W~~~~~~-----------------------------------------   53 (232)
                      ..++.+.+|++++|.|.+.+.+.     +.+.|++++..                                         
T Consensus         2 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   81 (222)
T 4i0k_A            2 EDPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRV   81 (222)
T ss_dssp             CCCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCG
T ss_pred             CCCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccc
Confidence            34677899999999999987653     78999984311                                         


Q ss_pred             --eeeEEEEeeee-----cCceeecCC---cEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCCC-cE
Q psy15206         54 --LGRLHLAIPYT-----SPEAQVDTP---PVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNG-QT  121 (232)
Q Consensus        54 --~~~~~~~~~~~-----~~~l~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~-~~  121 (232)
                        .|.|.|.....     .+.|.|..+   |.+.. .+ ...+..|+.+.|.|.+ .+.|.+.+.|++++....... ..
T Consensus        82 ~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~  159 (222)
T 4i0k_A           82 TDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTL-EP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTT  159 (222)
T ss_dssp             GGCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEEC-CC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEE
T ss_pred             ccCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEe-CC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcce
Confidence              13556655322     444555433   33332 22 3356689999999999 778889999998443332221 11


Q ss_pred             Ee---eCC---eEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEe
Q psy15206        122 IF---TGS---TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTV  169 (232)
Q Consensus       122 ~~---~~~---~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~  169 (232)
                      ..   ..+   .|.|.++..+|.|.|+|.+.|..+. ....+.+.|..+|....
T Consensus       160 ~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~p~~~~  212 (222)
T 4i0k_A          160 SQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQ-QDAHGSVTITGQPLTFP  212 (222)
T ss_dssp             EEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTT-EEEEEEEECCC------
T ss_pred             eEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCC-CceEEEEEEeCCccccC
Confidence            11   122   3788999999999999999999887 66777888877665443

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.63  E-value=9.7e-15  Score=106.56  Aligned_cols=136  Identities=18%  Similarity=0.301  Sum_probs=90.2

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE---------------------------------------
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK---------------------------------------   52 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~---------------------------------------   52 (232)
                      .+.+... |.++.+.+|++++|.|.+.+.|.+.+.|+|+..                                       
T Consensus        12 ~~~v~~~-p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   90 (276)
T 3auv_A           12 DIQMTQS-PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ   90 (276)
T ss_dssp             CCCEEEE-CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             ceeEEeC-CCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCC
Confidence            4556655 778889999999999999998888999998321                                       


Q ss_pred             --eeeeEEEEeeee-------cCceeecCCcE-------------EecCCCCceEeecCCcEEEEeeeccCC--CCeEEE
Q psy15206         53 --RLGRLHLAIPYT-------SPEAQVDTPPV-------------ILNNSPQLSVAKEGQSVQLECHAEGHP--IPTISW  108 (232)
Q Consensus        53 --~~~~~~~~~~~~-------~~~l~v~~~p~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~W  108 (232)
                        +.|.|.|.....       ...|.|..++.             .....+....+.+|+++.|.|.+.+.+  .+.+.|
T Consensus        91 ~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W  170 (276)
T 3auv_A           91 PEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHW  170 (276)
T ss_dssp             GGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEE
T ss_pred             hhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEE
Confidence              012444443211       23455554321             111123456778899999999998866  478999


Q ss_pred             EeCC--eee-----------------CCCCcEEee------CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206        109 RREN--NAI-----------------LPNGQTIFT------GSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus       109 ~~~~--~~~-----------------~~~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      ++++  ..+                 ....++...      ...|.|.+++.+|+|.|+|.+.|.
T Consensus       171 ~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          171 VRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             EEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            9963  111                 011233222      127999999999999999999997

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.63  E-value=9e-15  Score=101.72  Aligned_cols=132  Identities=17%  Similarity=0.220  Sum_probs=89.6

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe----------------------------eeeEEEE
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR----------------------------LGRLHLA   60 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~----------------------------~~~~~~~   60 (232)
                      +..+|.|... |. ..+.+|++++|.|.+.+ +.+.+.|+|++..                            .|.|+|.
T Consensus         5 ~~~~P~i~~~-p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~   81 (201)
T 1nkr_A            5 VHRKPSLLAH-PG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCY   81 (201)
T ss_dssp             --CCCEEEEE-SC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             cCCCCeEEEE-cC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEe
Confidence            3568888877 44 77899999999999975 7789999995421                            1467776


Q ss_pred             eeee-----------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC-cEEe--
Q psy15206         61 IPYT-----------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-QTIF--  123 (232)
Q Consensus        61 ~~~~-----------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~-~~~~--  123 (232)
                      ....           .+.|.|..   +|.+.. .+. ..+.+|+.+.|.|.+.+ +.+.+.|+++|..+.... ....  
T Consensus        82 a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~-~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~  158 (201)
T 1nkr_A           82 GSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSA-QPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVN  158 (201)
T ss_dssp             EEBTTBTTCCCCCCCCEEEEEECSSCCCEEEE-ESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEET
T ss_pred             EecCCCCccccCCCCCEEEEeeccCCCCceec-CCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccC
Confidence            5321           22455543   233332 222 35778999999999876 567899999987653211 1111  


Q ss_pred             --eCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206        124 --TGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus       124 --~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                        ....|.|.+++  |.|.|+|.+.+.
T Consensus       159 ~~~~~~L~i~~v~--d~G~Y~C~a~~~  183 (201)
T 1nkr_A          159 GTFQADFPLGPAT--HGGTYRCFGSFH  183 (201)
T ss_dssp             TEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred             CceEEEEEeCCcC--CCeeEEEEEEcC
Confidence              14578999998  999999999864

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.63  E-value=3.6e-15  Score=104.54  Aligned_cols=131  Identities=15%  Similarity=0.259  Sum_probs=89.1

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEeCcE-----------------------------------------eeeeEE
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK-----------------------------------------RLGRLH   58 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~-----------------------------------------~~~~~~   58 (232)
                      |.++.+.+|++++|.|.+.+.|.+.+.|+|+..                                         +.|.|.
T Consensus         8 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   87 (213)
T 3d9a_L            8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYF   87 (213)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEE
Confidence            677889999999999999998888999997311                                         002455


Q ss_pred             EEeeee-------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeCCeeeCCCCcE-----
Q psy15206         59 LAIPYT-------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRENNAILPNGQT-----  121 (232)
Q Consensus        59 ~~~~~~-------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~~~~~~-----  121 (232)
                      |.....       ...|.|..   +|.+....+.. ....|+.+.|.|.+.+ .|.+ .+.|+++|..+......     
T Consensus        88 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~-~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~  166 (213)
T 3d9a_L           88 CQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQ  166 (213)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCC
T ss_pred             EeeecCCcceeCCCEEEEEecCCCCceeEeECCCh-hhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCc
Confidence            544221       22455543   44443322222 2336889999999987 5555 79999999877543111     


Q ss_pred             ------EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        122 ------IFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       122 ------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                            ....+.|.|.++..+|.|.|+|.+.|....
T Consensus       167 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          167 DSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  202 (213)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             cCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence                  111237999999999999999999996543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.62  E-value=1.6e-14  Score=101.83  Aligned_cols=145  Identities=20%  Similarity=0.326  Sum_probs=90.9

Q ss_pred             CcceEeecCCeEEEEEEecCCC-----CCeEEEEeCcE------------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP-----IPTISWRRNFK------------------------------------------   52 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p-----~~~~~W~~~~~------------------------------------------   52 (232)
                      +..+.+.+|++++|.|.+.+.|     ...+.|++++.                                          
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            5667899999999999997655     44899998420                                          


Q ss_pred             ---eeeeEEEEeee-----ecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeC-CeeeCCCCcEEe
Q psy15206         53 ---RLGRLHLAIPY-----TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRE-NNAILPNGQTIF  123 (232)
Q Consensus        53 ---~~~~~~~~~~~-----~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~-~~~~~~~~~~~~  123 (232)
                         +.|.|.|....     ..+.|.|..++.... .........|+.+.|.|.+.|.|.+.+.|+++ +..+........
T Consensus        88 ~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~-~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~  166 (222)
T 3sbw_C           88 KLQDAGVYRCMISYGGADYKRITVKVNAPYNKIN-QRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTN  166 (222)
T ss_dssp             CGGGCEEEEEEEESSSEEEEEEEEEEEBCCCCCE-EEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEE
T ss_pred             ccccCeEEEEEEEeCCCceeEEEEEEECCCCCCC-ceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEE
Confidence               11356665422     244555654432211 01112456799999999999999999999998 444332111101


Q ss_pred             ---eCCeE---EECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccE
Q psy15206        124 ---TGSTL---QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPI  166 (232)
Q Consensus       124 ---~~~~l---~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~  166 (232)
                         ..+.+   ....+...|.|.|+|.+.|..+. ....+.+.|..+|.
T Consensus       167 ~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~-~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          167 SKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPE-ENHTAELVIPELPL  214 (222)
T ss_dssp             CC----CEEEEEEEEEECCTTCEEEEEEEETTTT-EEEEEEEECCCC--
T ss_pred             EcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccc-eeeEEEEEecCCcc
Confidence               11111   22245678999999999999887 55667777765554

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.62  E-value=1.7e-14  Score=103.62  Aligned_cols=134  Identities=17%  Similarity=0.336  Sum_probs=88.6

Q ss_pred             CeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE----------------------------------------
Q psy15206         13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK----------------------------------------   52 (232)
Q Consensus        13 P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~----------------------------------------   52 (232)
                      +.+... +.++.+.+|++++|.|.+.+.|.+.+.|+|+..                                        
T Consensus         5 ~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   83 (250)
T 3esu_F            5 IVLIQS-TSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ   83 (250)
T ss_dssp             CCEECS-CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eeEEec-CCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh
Confidence            344444 677889999999999999998888999998310                                        


Q ss_pred             -eeeeEEEEeee-------ecCceeecCCc------------------EEecCCCCceEeecCCcEEEEeeeccCC--CC
Q psy15206         53 -RLGRLHLAIPY-------TSPEAQVDTPP------------------VILNNSPQLSVAKEGQSVQLECHAEGHP--IP  104 (232)
Q Consensus        53 -~~~~~~~~~~~-------~~~~l~v~~~p------------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~  104 (232)
                       +.|.|.|....       ....|.|..++                  ......+....+.+|+++.|.|.+.+.+  .+
T Consensus        84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  163 (250)
T 3esu_F           84 EDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSS  163 (250)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGS
T ss_pred             hhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCC
Confidence             11355555421       13345554421                  1111134456688899999999998866  67


Q ss_pred             eEEEEeC--CeeeCC-----------------CCcEEee------CCeEEECCCCCCCCeEEEEEeEe
Q psy15206        105 TISWRRE--NNAILP-----------------NGQTIFT------GSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus       105 ~~~W~~~--~~~~~~-----------------~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+.|+++  +..+..                 ..++...      ..+|.|.++..+|+|.|.|.+.+
T Consensus       164 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          164 WMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            8999987  332210                 1122221      12699999999999999999986

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.62  E-value=7e-15  Score=103.08  Aligned_cols=136  Identities=18%  Similarity=0.264  Sum_probs=90.8

Q ss_pred             CeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCc-----------------------------------------
Q psy15206         13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNF-----------------------------------------   51 (232)
Q Consensus        13 P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~-----------------------------------------   51 (232)
                      |.|+.. +..+.+.+|++++|.|.+.+.|.+.+.|+|+.                                         
T Consensus         2 ~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   80 (213)
T 3r06_A            2 IQMTQS-PSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLES   80 (213)
T ss_dssp             CCEEEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CeeEeC-CCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCc
Confidence            455555 77888999999999999999889999999821                                         


Q ss_pred             EeeeeEEEEeeee-------cCceee---cCCcEEecCCCCceEeecCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCC
Q psy15206         52 KRLGRLHLAIPYT-------SPEAQV---DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI--PTISWRRENNAILPNG  119 (232)
Q Consensus        52 ~~~~~~~~~~~~~-------~~~l~v---~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~  119 (232)
                      .+.|.|.|.....       ...|.|   ..+|.+.. .+.......|+.+.|.|.+.+.++  +.+.|+++|..+....
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~-~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~  159 (213)
T 3r06_A           81 EDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSI-FPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGV  159 (213)
T ss_dssp             GGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEE-ECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             ccCEEEEEecccCCceEEcCCceEEEeccCCCceeee-eCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCce
Confidence            0113555554211       334555   33444432 222233446778999999988554  3799999998775421


Q ss_pred             -c----------EEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206        120 -Q----------TIFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       120 -~----------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                       .          .....+.|.|.....+|.|.|+|.+.|...
T Consensus       160 ~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          160 LQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS  201 (213)
T ss_dssp             EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             EeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence             0          011123577888888899999999999653

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.62  E-value=8.1e-13  Score=93.10  Aligned_cols=212  Identities=15%  Similarity=0.231  Sum_probs=130.8

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecC-CC---CCeEEEEeCcEee-----------------eeEEEEeeee------
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEG-HP---IPTISWRRNFKRL-----------------GRLHLAIPYT------   64 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~-~p---~~~~~W~~~~~~~-----------------~~~~~~~~~~------   64 (232)
                      .+.+... |+...+..|+.++|.|.+.+ .|   +..|+|+|++..+                 |.|+|.+...      
T Consensus         2 ~~tVs~~-P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT~tLti~s~t~sdSG~YqCvVTDa~Gcs~t   80 (304)
T 3shs_A            2 AFTVSIQ-SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAGSYKVTVQDTDTMTSV   80 (304)
T ss_dssp             CEEEEEE-ESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEEETTTCCEE
T ss_pred             ccEEEeC-CCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCcceEEeeeccccCCeEEEEEEEECCCCeee
Confidence            3455555 77888999999999999874 56   6789999976332                 4677765322      


Q ss_pred             --cCceeecCCcEEecCCCCceEeecCCcEEEEeee--cc-CC-----CCeEEEEeCCeeeCCCCcEEeeCCeEEECCCC
Q psy15206         65 --SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA--EG-HP-----IPTISWRRENNAILPNGQTIFTGSTLQIPRIT  134 (232)
Q Consensus        65 --~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~--~~-~~-----~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~  134 (232)
                        .+.+.....+......+.......+..+.|.+.+  .| .+     ..+++|++++..+..       ...|.+....
T Consensus        81 Ss~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg-------Aq~lT~sS~T  153 (304)
T 3shs_A           81 ESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-------TQDITIQEFT  153 (304)
T ss_dssp             ECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES-------SSEEEECSCC
T ss_pred             eeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC-------ccccceeeEE
Confidence              2223322222332333555555567788888876  43 33     458999999876532       2356778888


Q ss_pred             CCCCeEEEEEeEeCCC-CceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEe--------ecCCCC--eEEEe--eC
Q psy15206        135 KEDRGAYYCVAQNGIG-RGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHI--------EAYPHP--ILYWA--KD  201 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~--------~~~p~~--~~~W~--~~  201 (232)
                      ..+.|.|.|.+.+..+ ...+..+.+.+...+.-........+..|+.+.|...+        .|.|..  .+.|+  |.
T Consensus       154 ateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (304)
T 3shs_A          154 ADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQRE  233 (304)
T ss_dssp             GGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEEEEEECT
T ss_pred             ecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEEEEEeec
Confidence            8999999999998754 44455555554433222222334467788888887653        245544  37787  34


Q ss_pred             CEEe----cCC-----CeEEEE------EeccccCCceEEEEecC
Q psy15206        202 GEIV----VND-----EYHSIS------NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       202 g~~~----~~~-----~~~~~~------~~~~~~~d~g~Y~C~~~  231 (232)
                      |+..    ..+     ..|.+.      ....+..|...++|.+-
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (304)
T 3shs_A          234 GQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK  278 (304)
T ss_dssp             TCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             CccCchhhhhhhhhhhccceeCCCcceeecccccccchheeeHHH
Confidence            4321    110     123332      23456688899999863

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.61  E-value=1e-14  Score=105.08  Aligned_cols=146  Identities=17%  Similarity=0.262  Sum_probs=93.8

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCc--E-------------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNF--K-------------------------------------------   52 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~--~-------------------------------------------   52 (232)
                      +.++.+.+|++|+|.|.+.+.+  .+.+.|+|..  .                                           
T Consensus         8 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   87 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSL   87 (253)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCC
Confidence            6788899999999999998844  7789999821  0                                           


Q ss_pred             ---eeeeEEEEeee-------ecCceeecC---------------CcEEecCCCCceEeecCCcEEEEeeeccCCCC---
Q psy15206         53 ---RLGRLHLAIPY-------TSPEAQVDT---------------PPVILNNSPQLSVAKEGQSVQLECHAEGHPIP---  104 (232)
Q Consensus        53 ---~~~~~~~~~~~-------~~~~l~v~~---------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---  104 (232)
                         +.|.|.|....       ....|.|..               ++.+. ..+....+.+|+++.|.|.+.+.+.+   
T Consensus        88 ~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~~~~~~~~~~  166 (253)
T 3uzq_A           88 TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMT-QTPASLAVSLGQRATISCRASENVDRYGN  166 (253)
T ss_dssp             CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEE-EECSEEEECTTSCEEEEEEESSCCEETTE
T ss_pred             CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEE-CcCCeEEEeCCCCEEEEEEecCccccCCC
Confidence               00234443321       133455543               12222 23555778899999999999987776   


Q ss_pred             -eEEEEeCC--eeeC------------CCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEecc
Q psy15206        105 -TISWRREN--NAIL------------PNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       105 -~~~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  165 (232)
                       .+.|+++.  ..+.            ...++...    ..+|.|.+++.+|+|.|.|.+.+..+........|.|...+
T Consensus       167 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~  246 (253)
T 3uzq_A          167 SFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPL  246 (253)
T ss_dssp             ECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC-
T ss_pred             cEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCC
Confidence             89999852  2110            01122111    23699999999999999999998654434445566666544


Q ss_pred             E
Q psy15206        166 I  166 (232)
Q Consensus       166 ~  166 (232)
                      .
T Consensus       247 ~  247 (253)
T 3uzq_A          247 E  247 (253)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.61  E-value=6.8e-17  Score=113.62  Aligned_cols=125  Identities=17%  Similarity=0.240  Sum_probs=82.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCC---CeEEEEeCCeeeCCC---------CcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAILPN---------GQTIFTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+....+.+|+.+.|.|.+.+.++   +.+.| + +......         .........|.|.++..+|.|.|.|.+.+
T Consensus        10 ~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~Y~C~~~~   87 (214)
T 1ow0_A           10 RPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAY   87 (214)
T ss_dssp             CCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECC
T ss_pred             CcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCeEEEEEec
Confidence            355556678999999999988654   68999 4 3332110         00001223577888888999999999998


Q ss_pred             CCCCce-eeEEE-EEEEeccEEEeccc-eeeeeccCeEEEEEEeecC-CC-CeEEEeeCCEEec
Q psy15206        148 GIGRGA-RRKIE-VKVEFAPIVTVQST-RIGQALHHDMDLDCHIEAY-PH-PILYWAKDGEIVV  206 (232)
Q Consensus       148 ~~~~~~-~~~~~-l~v~~~p~~~~~~~-~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~g~~~~  206 (232)
                      ..+... .+.+. +.+..+|.+.+.+. ...+..|+.+.|.|.+.|+ |. +.|.|+|||..+.
T Consensus        88 ~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~  151 (214)
T 1ow0_A           88 PESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELP  151 (214)
T ss_dssp             SSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             CCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECC
Confidence            755321 12221 12345777765443 2235578899999999986 43 3899999998764

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.61  E-value=2.6e-15  Score=106.48  Aligned_cols=130  Identities=19%  Similarity=0.304  Sum_probs=88.7

Q ss_pred             CCcceEeecCCeEEEEEEecCCCC-CeEEEEeCcEe-------------------------------e------------
Q psy15206         19 STQLSVAKEGQSVQLECHAEGHPI-PTISWRRNFKR-------------------------------L------------   54 (232)
Q Consensus        19 ~~~~~~~~~G~~v~l~C~~~~~p~-~~~~W~~~~~~-------------------------------~------------   54 (232)
                      .|.++.+.+|++++|.|.+.+.+. +.+.|++++..                               .            
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~   85 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQ   85 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCC
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccC
Confidence            367888999999999999999884 89999973211                               0            


Q ss_pred             ----eeEEEEeeee-------cCceeecCCcE--EecCCCCceEeecCCcE-EEEeee-ccCCCCeEEEEeCCeeeCCCC
Q psy15206         55 ----GRLHLAIPYT-------SPEAQVDTPPV--ILNNSPQLSVAKEGQSV-QLECHA-EGHPIPTISWRRENNAILPNG  119 (232)
Q Consensus        55 ----~~~~~~~~~~-------~~~l~v~~~p~--~~~~~~~~~~~~~g~~~-~l~C~~-~~~~~~~~~W~~~~~~~~~~~  119 (232)
                          |.|.|.....       .+.|.|..+|.  .+...+....+..|+.+ .|.|.+ .+.|.+.+.|++++..+....
T Consensus        86 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~  165 (231)
T 2pet_A           86 VGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPV  165 (231)
T ss_dssp             GGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCS
T ss_pred             cccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcccc
Confidence                2455543211       44566655432  11223334445578887 999999 889999999999998875443


Q ss_pred             ----cEEee-------------CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206        120 ----QTIFT-------------GSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus       120 ----~~~~~-------------~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                          +....             .+.|.|.....+|.|.|+|.+.|.
T Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          166 EMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             SCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             ccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence                22111             145777766666799999999985

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.61  E-value=1.2e-14  Score=104.97  Aligned_cols=154  Identities=19%  Similarity=0.298  Sum_probs=95.1

Q ss_pred             cCCCeeecCCCcceEeecCCeEEEEEEecCC--CCCeEEEEeCc-------E----------------------------
Q psy15206         10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGH--PIPTISWRRNF-------K----------------------------   52 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~--p~~~~~W~~~~-------~----------------------------   52 (232)
                      ..+|.+.+.++.++.+.+|++|+|.|.+.+.  +.+.+.|+|..       .                            
T Consensus         5 ~~~~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   84 (257)
T 3gkz_A            5 DDDKEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKN   84 (257)
T ss_dssp             ----CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGT
T ss_pred             CCCccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCc
Confidence            3445555554778889999999999999873  47899999821       0                            


Q ss_pred             ------------eeeeEEEEeeee----------cCceeecCC-------------cEEecCCCCceEeecCCcEEEEee
Q psy15206         53 ------------RLGRLHLAIPYT----------SPEAQVDTP-------------PVILNNSPQLSVAKEGQSVQLECH   97 (232)
Q Consensus        53 ------------~~~~~~~~~~~~----------~~~l~v~~~-------------p~~~~~~~~~~~~~~g~~~~l~C~   97 (232)
                                  +.|.|.|.....          ...|.|..+             +..+...+....+.+|+++.|.|.
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~  164 (257)
T 3gkz_A           85 QVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCS  164 (257)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEE
T ss_pred             eEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEE
Confidence                        113455544221          234555443             122223455677889999999999


Q ss_pred             eccCCCC-eEEEEeC--CeeeC------------CCCcEEe----eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         98 AEGHPIP-TISWRRE--NNAIL------------PNGQTIF----TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        98 ~~~~~~~-~~~W~~~--~~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      +.+.+.+ .+.|++.  +..+.            ...++..    ...+|.|.++..+|+|.|.|.+.+...........
T Consensus       165 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~  244 (257)
T 3gkz_A          165 ASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTK  244 (257)
T ss_dssp             ESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred             EccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEE
Confidence            9987777 8999984  22211            0112211    12359999999999999999998753322223344


Q ss_pred             EEEEe
Q psy15206        159 VKVEF  163 (232)
Q Consensus       159 l~v~~  163 (232)
                      |.|..
T Consensus       245 l~v~~  249 (257)
T 3gkz_A          245 LEIKR  249 (257)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            55543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.61  E-value=1.4e-14  Score=101.60  Aligned_cols=124  Identities=19%  Similarity=0.260  Sum_probs=86.2

Q ss_pred             CcceEeecCCeEEEEEEecCC-------CCCeEEEEeCcEe---------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGH-------PIPTISWRRNFKR---------------------------------------   53 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~-------p~~~~~W~~~~~~---------------------------------------   53 (232)
                      |.++.+.+|++++|.|.+.+.       +.+.+.|+|++..                                       
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I   86 (214)
T 2zg1_A            7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSI   86 (214)
T ss_dssp             CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEE
Confidence            678889999999999999854       5778999985321                                       


Q ss_pred             -------eeeEEEEeeee----------cCceeecCC---cEEecCCCCceEeecCCcEEEEeeeccC----CCCeEEEE
Q psy15206         54 -------LGRLHLAIPYT----------SPEAQVDTP---PVILNNSPQLSVAKEGQSVQLECHAEGH----PIPTISWR  109 (232)
Q Consensus        54 -------~~~~~~~~~~~----------~~~l~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~~~~W~  109 (232)
                             .|.|.|.....          .+.|.|..+   |.+..  +.  .+.+|+.+.|.|.+.+.    |.+.+.|+
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~--~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~  162 (214)
T 2zg1_A           87 GDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF--LE--PLESGRPTRLSCSLPGSCEAGPPLTFSWT  162 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC----C--CCCTTCCEEEEEECTTCCSCSSCCEEEEE
T ss_pred             ccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec--Cc--cccCCCeEEEEEEeccCCCCCCCceEEEe
Confidence                   03555554211          334555442   22221  11  25689999999999764    77899999


Q ss_pred             eCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206        110 RENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +++.......  ....+.|.|..+..+|.|.|+|.+.|..
T Consensus       163 ~~~~~~~~~~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~  200 (214)
T 2zg1_A          163 GNALSPLDPE--TTRSSELTLTPRPEDHGTNLTCQMKRQG  200 (214)
T ss_dssp             SSTTSSSCSS--CCCSSEEEECCCTTCCSCEEEEEEECC-
T ss_pred             CCCCccCCCC--ceeEEEEEEecccHHcCcEEEEEEEeCC
Confidence            9986543221  2346789999999999999999999964

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.60  E-value=1.2e-14  Score=101.75  Aligned_cols=130  Identities=12%  Similarity=0.257  Sum_probs=86.8

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEeCc--Ee---------------------------------------eeeEE
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNF--KR---------------------------------------LGRLH   58 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~--~~---------------------------------------~~~~~   58 (232)
                      |.++.+.+|++++|.|.+.+.|.+.+.|+++.  ..                                       .|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            67788999999999999999888899999831  00                                       02444


Q ss_pred             EEeeee-------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeCCeeeCCC-Cc-----
Q psy15206         59 LAIPYT-------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRENNAILPN-GQ-----  120 (232)
Q Consensus        59 ~~~~~~-------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~~~-~~-----  120 (232)
                      |.....       ...|.|..   +|.+....+.. ....|+.+.|.|.+.| .|.+ .+.|+++|..+... ..     
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~  165 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPST-EQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQ  165 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECCCCBCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCC
T ss_pred             EEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCch-hhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCc
Confidence            443211       22455543   34333212222 2336889999999987 4443 79999999876543 00     


Q ss_pred             -----EEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206        121 -----TIFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       121 -----~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                           .....+.|.|.++..+|.|.|+|.+.|...
T Consensus       166 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~  200 (210)
T 1lk3_L          166 DSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS  200 (210)
T ss_dssp             CTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred             cCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence                 011123689999999999999999998654

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.60  E-value=2.1e-14  Score=103.09  Aligned_cols=150  Identities=22%  Similarity=0.341  Sum_probs=91.0

Q ss_pred             CCceEeecCCcEEEEeeeccC--CCCeEEEEeCC--ee---e---C-----------CCCcEEee------CCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGH--PIPTISWRREN--NA---I---L-----------PNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~---~---~-----------~~~~~~~~------~~~l~i~~~  133 (232)
                      +....+.+|+++.|.|...+.  ....+.|++..  ..   +   .           ...++...      ..+|.|.++
T Consensus         6 ~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   85 (248)
T 3u2s_H            6 SGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSL   85 (248)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            344677889999999998752  34579998742  11   0   0           01222221      125999999


Q ss_pred             CCCCCeEEEEEeEeCC---------------------CCceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEe
Q psy15206        134 TKEDRGAYYCVAQNGI---------------------GRGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHI  188 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~---------------------~~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~  188 (232)
                      +.+|+|.|.|.+.+..                     .........+.|.    .+|.+...+.......|+.+.|.|.+
T Consensus        86 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~  165 (248)
T 3u2s_H           86 RVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV  165 (248)
T ss_dssp             CGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEE
T ss_pred             CHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEE
Confidence            9999999999998631                     0011123345554    45666644444445579999999999


Q ss_pred             ecC-C-CCeEEEeeCCEEe---------cCCCeEE----EEEeccccCCceEEEEecC
Q psy15206        189 EAY-P-HPILYWAKDGEIV---------VNDEYHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       189 ~~~-p-~~~~~W~~~g~~~---------~~~~~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .++ | ...+.|+++|..+         ..++.|.    +.+......| |.|+|.|.
T Consensus       166 ~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~  222 (248)
T 3u2s_H          166 KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  222 (248)
T ss_dssp             EEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEE
T ss_pred             eeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEE
Confidence            874 4 3469999988521         1233343    3344445567 99999874

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.60  E-value=1.4e-14  Score=103.53  Aligned_cols=149  Identities=19%  Similarity=0.319  Sum_probs=93.3

Q ss_pred             CceEeecCCcEEEEeeeccCC----CCeEEEEeCCe--e---e---C----------------CCCcEEee------CCe
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP----IPTISWRRENN--A---I---L----------------PNGQTIFT------GST  127 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~----~~~~~W~~~~~--~---~---~----------------~~~~~~~~------~~~  127 (232)
                      ....+.+|+++.|.|.+.+.+    ...+.|++...  .   +   .                ...++...      ..+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   87 (239)
T 3tv3_H            8 GPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVF   87 (239)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEE
T ss_pred             CCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEE
Confidence            345677899999999997754    34799998421  1   0   0                01122211      125


Q ss_pred             EEECCCCCCCCeEEEEEeEeCCC------------CceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecC
Q psy15206        128 LQIPRITKEDRGAYYCVAQNGIG------------RGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAY  191 (232)
Q Consensus       128 l~i~~~~~~~~g~y~C~~~~~~~------------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~  191 (232)
                      |.|.+++.+|+|.|.|.+.+..+            ........+.|.    .+|.+...+....+..|+.+.|.|.+.++
T Consensus        88 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~  167 (239)
T 3tv3_H           88 LKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDY  167 (239)
T ss_dssp             EEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEE
T ss_pred             EEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeE
Confidence            99999999999999999976421            001122344443    35666644444445679999999999884


Q ss_pred             -CCC-eEEEeeCCEEe---------cCCCeEE----EEEeccccCCceEEEEecC
Q psy15206        192 -PHP-ILYWAKDGEIV---------VNDEYHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       192 -p~~-~~~W~~~g~~~---------~~~~~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                       |.+ .+.|+++|..+         ..+..|.    +.+......| |.|+|.|.
T Consensus       168 ~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~  221 (239)
T 3tv3_H          168 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  221 (239)
T ss_dssp             BSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEE
T ss_pred             eCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEE
Confidence             434 48899988532         1233343    4455556677 99999974

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.60  E-value=1.4e-14  Score=99.55  Aligned_cols=123  Identities=24%  Similarity=0.388  Sum_probs=81.2

Q ss_pred             cceEeecCCeEEEEEEecCCCCCeEEEEeCcEee-------------------eeEEEEeeee--------cCceeecCC
Q psy15206         21 QLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-------------------GRLHLAIPYT--------SPEAQVDTP   73 (232)
Q Consensus        21 ~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~-------------------~~~~~~~~~~--------~~~l~v~~~   73 (232)
                      .-.++.+|++++|.|.+.+ ++ .+.|+|++..+                   |.|+|.....        .+.+.+..+
T Consensus         7 ~~~v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~   84 (186)
T 1jbj_A            7 EYKVSISGTSVELTCPLDS-DE-NLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADD   84 (186)
T ss_dssp             CCEEEEETTEEEEECSSCC-CT-TCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCC
T ss_pred             EEEEEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCCCCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecccc
Confidence            3445678999999999987 43 49999965433                   3466644221        111111111


Q ss_pred             cEEe-------------------cCCCCc---eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEEC
Q psy15206         74 PVIL-------------------NNSPQL---SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIP  131 (232)
Q Consensus        74 p~~~-------------------~~~~~~---~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~  131 (232)
                      +...                   ......   ..+.+|+.+.|.|.+   |.+.+.|+++|..+.....   ..+.|.|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~---~~~~L~i~  158 (186)
T 1jbj_A           85 AKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA---TKNTWNLG  158 (186)
T ss_dssp             CCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC---CSSCCEEE
T ss_pred             cccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC---CcceEEEC
Confidence            1100                   000001   123389999999988   7789999999988753322   45679999


Q ss_pred             CCCCCCCeEEEEEeEeCCCC
Q psy15206        132 RITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       132 ~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ++..+|.|.|+|.+.|..|.
T Consensus       159 ~v~~~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          159 NNAKDPRGTYQCQGAKETSN  178 (186)
T ss_dssp             ETTSCCEEEEEEEESSCEEE
T ss_pred             CCCcCcCEEEEEEEEcCcCC
Confidence            99999999999999987654

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.60  E-value=1e-14  Score=103.70  Aligned_cols=147  Identities=19%  Similarity=0.290  Sum_probs=88.9

Q ss_pred             eEeecCCcEEEEeeeccCC--CCeE--EEEeCCe--e---e-----C-----------CCCcEEee------CCeEEECC
Q psy15206         84 SVAKEGQSVQLECHAEGHP--IPTI--SWRRENN--A---I-----L-----------PNGQTIFT------GSTLQIPR  132 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~--~~~~--~W~~~~~--~---~-----~-----------~~~~~~~~------~~~l~i~~  132 (232)
                      ..+.+|+++.|.|...+.+  ...+  .|++...  .   +     .           ...++...      ..+|.|.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   89 (232)
T 3qhz_H           10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTN   89 (232)
T ss_dssp             SEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             EEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECc
Confidence            4677899999999986532  2345  9997421  1   0     0           01122221      12599999


Q ss_pred             CCCCCCeEEEEEeEeCCC-------CceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEe
Q psy15206        133 ITKEDRGAYYCVAQNGIG-------RGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWA  199 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~~~-------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~  199 (232)
                      ++.+|+|.|.|.+.+..+       ........+.|.    .+|.+...+....+..|+.++|.|.+.+.+++  .+.|+
T Consensus        90 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~  169 (232)
T 3qhz_H           90 MDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN  169 (232)
T ss_dssp             CCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEE
Confidence            999999999999986521       112233345554    45666644444455679999999999885543  58899


Q ss_pred             eCCEEe---------cCCCeE----EEEEeccccCCceEEEEecC
Q psy15206        200 KDGEIV---------VNDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       200 ~~g~~~---------~~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++|..+         ..++.|    .+.+......| |.|+|.|.
T Consensus       170 ~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~  213 (232)
T 3qhz_H          170 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  213 (232)
T ss_dssp             GGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEE
T ss_pred             ECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEE
Confidence            988521         223333    34455556677 99999874

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.60  E-value=8.2e-15  Score=103.08  Aligned_cols=136  Identities=16%  Similarity=0.256  Sum_probs=89.2

Q ss_pred             CeeecCCCcceEeecCCeEEEEEEecCC-CCCeEEEEeCc----------------------------------------
Q psy15206         13 PVILNNSTQLSVAKEGQSVQLECHAEGH-PIPTISWRRNF----------------------------------------   51 (232)
Q Consensus        13 P~i~~~~~~~~~~~~G~~v~l~C~~~~~-p~~~~~W~~~~----------------------------------------   51 (232)
                      |.++.. + ++.+.+|++++|.|.+.+. +.+.+.|+|+.                                        
T Consensus         2 ~~v~~~-p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I   79 (218)
T 3s96_B            2 LVLTQS-S-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSI   79 (218)
T ss_dssp             CSEECC-S-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEE
T ss_pred             CeEEeC-C-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEE
Confidence            445544 5 8889999999999999998 88999999821                                        


Q ss_pred             -----EeeeeEEEEeeee-----------cCceeec----CCcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEE
Q psy15206         52 -----KRLGRLHLAIPYT-----------SPEAQVD----TPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWR  109 (232)
Q Consensus        52 -----~~~~~~~~~~~~~-----------~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~  109 (232)
                           .+.|.|.|.....           ...|.|.    .+|.+... +.......|+.+.|.|.+.+ .|.+ .+.|+
T Consensus        80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~-~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~  158 (218)
T 3s96_B           80 SNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVF-PPSSEELKENKATLVCLISNFSPSGVTVAWK  158 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEE-CCCHHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             ccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEee-CCCcccccCCcEEEEEEECcccCCCeEEEEE
Confidence                 0114566655221           2355555    33443321 22223345788999999988 5666 79999


Q ss_pred             eCCeeeCCCCc---------EEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        110 RENNAILPNGQ---------TIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       110 ~~~~~~~~~~~---------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ++|..+.....         .....+.|.|.....+|.|.|+|.+.|..+.
T Consensus       159 k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~  209 (218)
T 3s96_B          159 ANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDT  209 (218)
T ss_dssp             ETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEE
T ss_pred             ECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCc
Confidence            99987643111         0111234778888888899999999997543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.59  E-value=3.8e-14  Score=102.25  Aligned_cols=143  Identities=20%  Similarity=0.288  Sum_probs=91.8

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCc--E-------------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNF--K-------------------------------------------   52 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~--~-------------------------------------------   52 (232)
                      ++++.+.+|++|+|.|.+.+.+  .+.+.|+|..  .                                           
T Consensus         9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   88 (256)
T 3umt_A            9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL   88 (256)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence            4567799999999999998865  6789998721  0                                           


Q ss_pred             ---eeeeEEEEeeee----------cCceeecC----------------CcEEecCCCCceEeecCCcEEEEeeeccCCC
Q psy15206         53 ---RLGRLHLAIPYT----------SPEAQVDT----------------PPVILNNSPQLSVAKEGQSVQLECHAEGHPI  103 (232)
Q Consensus        53 ---~~~~~~~~~~~~----------~~~l~v~~----------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~  103 (232)
                         +.|.|.|.....          ...|.|..                ++.+. ..+....+.+|+++.|.|.+.+.+.
T Consensus        89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~v~~G~~v~L~C~~~~~~~  167 (256)
T 3umt_A           89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLT-QSPSSLSASLGERVSITCRASQDIG  167 (256)
T ss_dssp             CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEE-EECSEEEECTTCCEEEEEEESSCCT
T ss_pred             CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEE-cCCCeEEEECCCCEEEEEEEecCCC
Confidence               012444443111          23455543                22222 2345567889999999999999888


Q ss_pred             CeEEEEeCC--eeeC------------CCCcEEe----eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206        104 PTISWRREN--NAIL------------PNGQTIF----TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       104 ~~~~W~~~~--~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      +.+.|++..  ..+.            ...++..    ...+|.|.++..+|+|.|+|.+.+...........|.|..
T Consensus       168 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~  245 (256)
T 3umt_A          168 SNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKR  245 (256)
T ss_dssp             TCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             cEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEEC
Confidence            899999842  2111            0122211    1235999999999999999999875433233445565554

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.58  E-value=7e-15  Score=105.96  Aligned_cols=141  Identities=14%  Similarity=0.205  Sum_probs=91.0

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCC-----CCeEEEEeCc--E-----------------------------
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHP-----IPTISWRRNF--K-----------------------------   52 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p-----~~~~~W~~~~--~-----------------------------   52 (232)
                      +..+|.+... +.++.+.+|++++|.|.+.+.+     .+.+.|+|+.  .                             
T Consensus        35 ~~~~~~~~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  113 (254)
T 2c1o_A           35 WLRELVMTQS-PLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDF  113 (254)
T ss_dssp             ---CCCEEEE-CSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEE
T ss_pred             eeeceeEEeC-CceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEE
Confidence            3346777766 7789999999999999999877     4899999732  0                             


Q ss_pred             ----------eeeeEEEEeeee-------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccC-CC-CeEEEEe
Q psy15206         53 ----------RLGRLHLAIPYT-------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-PTISWRR  110 (232)
Q Consensus        53 ----------~~~~~~~~~~~~-------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~  110 (232)
                                +.|.|.|.....       ...+.|..   +|.+....+.. ....|+.+.|.|.+.+. |. +.+.|++
T Consensus       114 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~l~C~~~g~~p~~~~v~W~k  192 (254)
T 2c1o_A          114 TLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSS-EQLTSGGASVVCFLNNFYPKDINVKWKI  192 (254)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCCh-hhccCCcEEEEEEEecccCCCcEEEEEE
Confidence                      002444443211       12444442   34333212221 22357799999999884 44 3599999


Q ss_pred             CCeeeCCC-Cc----------EEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        111 ENNAILPN-GQ----------TIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       111 ~~~~~~~~-~~----------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      +|..+... ..          .....+.|.|.++..+|.|.|+|.+.|....
T Consensus       193 ~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          193 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  244 (254)
T ss_dssp             SSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence            99876543 00          1112347999999999999999999997543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.58  E-value=2e-14  Score=102.32  Aligned_cols=138  Identities=16%  Similarity=0.278  Sum_probs=91.3

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCc----------------------------------------
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNF----------------------------------------   51 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~----------------------------------------   51 (232)
                      .+.+... +.++.+.+|++++|.|.+.+.+.+.+.|+|+.                                        
T Consensus        24 ~~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  102 (237)
T 3sob_L           24 DIQMTQS-PSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ  102 (237)
T ss_dssp             CCCEEEE-CSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             cceEEeC-CCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCC
Confidence            4556555 67789999999999999999888999999821                                        


Q ss_pred             -EeeeeEEEEeeee-------cCceeec---CCcEEecCCCCceEeecCCcEEEEeeecc-CC-CCeEEEEeCCeeeCCC
Q psy15206         52 -KRLGRLHLAIPYT-------SPEAQVD---TPPVILNNSPQLSVAKEGQSVQLECHAEG-HP-IPTISWRRENNAILPN  118 (232)
Q Consensus        52 -~~~~~~~~~~~~~-------~~~l~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~-~~~~~W~~~~~~~~~~  118 (232)
                       .+.|.|.|.....       ...|.|.   .+|.+.. .+.......|+.+.|.|.+.+ .| .+.+.|++++..+...
T Consensus       103 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~-~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~  181 (237)
T 3sob_L          103 PEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFI-FPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  181 (237)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEE-ECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             hhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEE-eCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCc
Confidence             0113555554221       2344442   2333322 111222335788999999988 44 4789999999876532


Q ss_pred             C-----------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        119 G-----------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       119 ~-----------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .           ......+.|.|.....+|.|.|+|.+.|....
T Consensus       182 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          182 SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             eeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence            1           11112245888899999999999999997543

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.58  E-value=5e-14  Score=98.39  Aligned_cols=147  Identities=22%  Similarity=0.330  Sum_probs=90.2

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--e--eC--------CCCcEEee-------CCeEEECCCCCCCCeE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--A--IL--------PNGQTIFT-------GSTLQIPRITKEDRGA  140 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~--~~--------~~~~~~~~-------~~~l~i~~~~~~~~g~  140 (232)
                      .+....+.+|+++.|.|.+.+.. +.+.|++...  .  ..        ...++...       ..+|.|.+++.+|.|.
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~   85 (207)
T 1ypz_E            7 SPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGT   85 (207)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEE
T ss_pred             CCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEE
Confidence            35556788999999999987644 4799998531  1  10        11233222       1379999999999999


Q ss_pred             EEEEeEeCCC---------C-ceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecC-CC-CeEEEeeCCEEec--
Q psy15206        141 YYCVAQNGIG---------R-GARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY-PH-PILYWAKDGEIVV--  206 (232)
Q Consensus       141 y~C~~~~~~~---------~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~~~W~~~g~~~~--  206 (232)
                      |.|.+.+..+         . .......|.|...+.....| .+.+..+ .+.|.|.+.++ |. +.+.|+++ ..+.  
T Consensus        86 Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P-~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~~l~~~  162 (207)
T 1ypz_E           86 YFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKP-SVFIMKN-GTNVACLVKDFYPKEVTISLRSS-KKIVEF  162 (207)
T ss_dssp             EEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCC-EEEEEEE-TTEEEEEEEEESSSCCEEEEECS-SEEEEC
T ss_pred             EEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCC-eEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-CcccCC
Confidence            9999987532         1 01123466665311100011 1111122 37999999876 43 68999998 5443  


Q ss_pred             -------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        207 -------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       207 -------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                             .++.|.+.. .....|.|.|+|.|.
T Consensus       163 ~~~~~~~~~g~y~~~~-~~~~~~~~~ytC~v~  193 (207)
T 1ypz_E          163 DPAIVISPSGKYSAVK-LGQYGDSNSVTCSVQ  193 (207)
T ss_dssp             CCEEEECTTSSEEEEE-CEEESSTTTCEEEEE
T ss_pred             ccceEEcCCCcEEEEE-eecccCCCcEEEEEE
Confidence                   234555542 233367899999974

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.58  E-value=2.3e-13  Score=92.31  Aligned_cols=144  Identities=13%  Similarity=0.220  Sum_probs=96.4

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCe-EEEEeCC-eeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPT-ISWRREN-NAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      +....+..|+++.|.|.... +.+. +.|...- +......+  .....|.|.++..  .|.|.|.+.... ....+.+.
T Consensus         6 P~~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~~--~~~~~l~l~~vs~--~g~y~C~~~c~~-~~~~~~~~   79 (185)
T 1iam_A            6 PSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPG--NNRKVYELSNVQE--DSQPMCYSNCPD-GQSTAKTF   79 (185)
T ss_dssp             SSEEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSSS--SSEEEEEEEEECS--CBCCEEEEECSS-CEEEEECE
T ss_pred             CCCcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEeccC--CceeEEEEEecCc--CCEEEEEEECCC-CceEEEEE
Confidence            45567889999999999964 4444 7786321 11110000  0113578888873  389999986543 34677888


Q ss_pred             EEEEeccE-EEeccceeeeeccCeEEEEEEeec-CCCC--eEEEeeCCEEecC------CCeEEEEEeccccCCce-EEE
Q psy15206        159 VKVEFAPI-VTVQSTRIGQALHHDMDLDCHIEA-YPHP--ILYWAKDGEIVVN------DEYHSISNFGTSEGTTG-SLQ  227 (232)
Q Consensus       159 l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~~~W~~~g~~~~~------~~~~~~~~~~~~~~d~g-~Y~  227 (232)
                      +.|+.+|. +.+.+....+.+|+.++|.|.+.| .|.+  .|.|+|++..+..      .....+... .+.+|.| .|+
T Consensus        80 l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~~~~~~tl~~~-~~reD~g~~~s  158 (185)
T 1iam_A           80 LTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVL-VRRDHHGAQFS  158 (185)
T ss_dssp             EEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEE-CCSSCSSCEEE
T ss_pred             EEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCCccccEEEEEe-ceeccCCCeEE
Confidence            88887664 556666556889999999999988 4544  4899999987753      223344444 3445556 999


Q ss_pred             EecC
Q psy15206        228 CKVP  231 (232)
Q Consensus       228 C~~~  231 (232)
                      |+|.
T Consensus       159 C~A~  162 (185)
T 1iam_A          159 CRTE  162 (185)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.57  E-value=5.6e-14  Score=101.37  Aligned_cols=139  Identities=22%  Similarity=0.303  Sum_probs=89.6

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecC--CCCCeEEEEeCc--E----------------------------------
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEG--HPIPTISWRRNF--K----------------------------------   52 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~--~p~~~~~W~~~~--~----------------------------------   52 (232)
                      .+|.+... +..+.+.+|++|+|.|.+.+  .+.+.+.|+|..  .                                  
T Consensus         5 ~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   83 (256)
T 3juy_B            5 HHQVQLVQ-SGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN   83 (256)
T ss_dssp             --CCEEEE-CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred             cceEEEEe-cCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence            34555555 88999999999999999987  367789999721  0                                  


Q ss_pred             ------------eeeeEEEEeeee------------------cCceeecCCcE--------------EecCCCCceEeec
Q psy15206         53 ------------RLGRLHLAIPYT------------------SPEAQVDTPPV--------------ILNNSPQLSVAKE   88 (232)
Q Consensus        53 ------------~~~~~~~~~~~~------------------~~~l~v~~~p~--------------~~~~~~~~~~~~~   88 (232)
                                  +.|.|.|.....                  ...|.|...+.              .+...+....+.+
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSP  163 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECT
T ss_pred             EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeC
Confidence                        012444443211                  22344544211              1122355667889


Q ss_pred             CCcEEEEeeeccCCC-CeEEEEeC--CeeeC------------CCCcEEe----eCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         89 GQSVQLECHAEGHPI-PTISWRRE--NNAIL------------PNGQTIF----TGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        89 g~~~~l~C~~~~~~~-~~~~W~~~--~~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      |+++.|.|.+.+.+. +.+.|++.  +..+.            ...++..    ...+|.|.++..+|+|.|.|.+.+..
T Consensus       164 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          164 GERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             TSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             CCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            999999999988775 78999983  22211            1122221    12359999999999999999998754


Q ss_pred             C
Q psy15206        150 G  150 (232)
Q Consensus       150 ~  150 (232)
                      .
T Consensus       244 ~  244 (256)
T 3juy_B          244 S  244 (256)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.57  E-value=6.9e-14  Score=88.16  Aligned_cols=93  Identities=24%  Similarity=0.358  Sum_probs=75.2

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEe
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+....    ...|.|.++..+|.|.|+|.+.|
T Consensus         6 ~pp~i~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   84 (114)
T 2cqv_A            6 SGPQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN   84 (114)
T ss_dssp             CCCEESC-CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred             CCCEEEe-CCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence            3455543 667778899999999999999999999999999887655555443    45799999999999999999999


Q ss_pred             CCCCceeeEEEEEEEeccE
Q psy15206        148 GIGRGARRKIEVKVEFAPI  166 (232)
Q Consensus       148 ~~~~~~~~~~~l~v~~~p~  166 (232)
                      ..|. ....+.+.|...|.
T Consensus        85 ~~g~-~~~~~~l~V~~~p~  102 (114)
T 2cqv_A           85 KLGS-RQAQVNLTVVDKPD  102 (114)
T ss_dssp             SSCE-EECCEEEEEECSCS
T ss_pred             CCCc-EEEEEEEEEECCCC
Confidence            8886 55677888876654

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.57  E-value=4e-14  Score=102.13  Aligned_cols=135  Identities=17%  Similarity=0.334  Sum_probs=90.0

Q ss_pred             CeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCc-----------------------------------------
Q psy15206         13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNF-----------------------------------------   51 (232)
Q Consensus        13 P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~-----------------------------------------   51 (232)
                      ..|+.. +.++.+.+|++++|.|.+.+.+.+.+.|+|..                                         
T Consensus         4 ~~v~q~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   82 (256)
T 3tf7_C            4 QSVTQP-DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKAS   82 (256)
T ss_dssp             CEEECS-CSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESS
T ss_pred             cEEEec-CceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECC
Confidence            345555 77889999999999999998899999999821                                         


Q ss_pred             ---EeeeeEEEEeeee----------cCceeecC--------------------CcEEecCCCCceEeecCCcEEEEeee
Q psy15206         52 ---KRLGRLHLAIPYT----------SPEAQVDT--------------------PPVILNNSPQLSVAKEGQSVQLECHA   98 (232)
Q Consensus        52 ---~~~~~~~~~~~~~----------~~~l~v~~--------------------~p~~~~~~~~~~~~~~g~~~~l~C~~   98 (232)
                         .+.|.|.|.....          ...|.|..                    ++.+. ..+....+.+|+++.|.|.+
T Consensus        83 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~p~~~~v~~G~~v~L~C~~  161 (256)
T 3tf7_C           83 VHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVT-QSPRNKVTVTGENVTLSCRQ  161 (256)
T ss_dssp             CCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEE-ESCSEEEEETTCCEEECEEE
T ss_pred             CCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEE-ecCCEEEEeCCCcEEEEEEc
Confidence               0012455544211          23455543                    22222 24556677799999999999


Q ss_pred             ccCCCCeEEEEeCCe--ee---C------------CCCcEEe-----eCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         99 EGHPIPTISWRRENN--AI---L------------PNGQTIF-----TGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        99 ~~~~~~~~~W~~~~~--~~---~------------~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .+. .+.+.|++...  .+   .            ...++..     ....|.|.++..+|+|.|+|.+.+..+
T Consensus       162 ~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          162 TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG  234 (256)
T ss_dssp             CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETT
T ss_pred             CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCC
Confidence            876 67899998431  11   0            0111111     123799999999999999999988654

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.57  E-value=1.6e-14  Score=89.83  Aligned_cols=69  Identities=17%  Similarity=0.358  Sum_probs=59.7

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+.+..+..|+++.|.|.+.|.|.|.|.|+|||..+..+.+         ..|.+.++...|+|.|+|.|.
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence            467888888888999999999999999999999999999998875543         467778888899999999873

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.57  E-value=3.8e-14  Score=101.45  Aligned_cols=133  Identities=20%  Similarity=0.282  Sum_probs=86.4

Q ss_pred             eeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE-----------------------------------------
Q psy15206         14 VILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK-----------------------------------------   52 (232)
Q Consensus        14 ~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~-----------------------------------------   52 (232)
                      .|+.. |.++.+.+|++++|.|.+.+.+.+.+.|+|+..                                         
T Consensus         3 ~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (242)
T 2znx_A            3 VLTQS-PATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE   81 (242)
T ss_dssp             CEEEE-CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred             cEEEc-CCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH
Confidence            34444 778889999999999999998888999998310                                         


Q ss_pred             eeeeEEEEeeee-------cCceeecCCcE-------------EecCCCCceEeecCCcEEEEeeeccCC--CCeEEEEe
Q psy15206         53 RLGRLHLAIPYT-------SPEAQVDTPPV-------------ILNNSPQLSVAKEGQSVQLECHAEGHP--IPTISWRR  110 (232)
Q Consensus        53 ~~~~~~~~~~~~-------~~~l~v~~~p~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~  110 (232)
                      +.|.|.|.....       ...|.|..++.             .+. .+....+.+|+++.|.|.+.+.+  .+.+.|++
T Consensus        82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k  160 (242)
T 2znx_A           82 DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQ-ESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIR  160 (242)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEE-EECCSEECTTSCEEEEEEEESSCGGGSCEEEEE
T ss_pred             HCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeee-cCCcceecCCCeEEEEEEEEccccCCcceeeEe
Confidence            012344433111       23456655432             111 12224577899999999998865  46799998


Q ss_pred             CC--eeeC----------------CCCcEEee------CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206        111 EN--NAIL----------------PNGQTIFT------GSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus       111 ~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      +.  ..+.                ...++...      ..+|.|.+++.+|+|.|.|.+.+.
T Consensus       161 ~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          161 KFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             ECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             eCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            53  2210                12223221      137999999999999999999873

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.56  E-value=1.5e-14  Score=104.44  Aligned_cols=69  Identities=26%  Similarity=0.360  Sum_probs=51.3

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEe--CCeeeC------------CCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRR--ENNAIL------------PNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      +....+.+|+++.|.|.+.+.+.+.+.|++  ++..+.            ...++..    ....|.|.++..+|+|.|+
T Consensus       146 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  225 (257)
T 1f3r_B          146 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF  225 (257)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEE
Confidence            344567789999999999988888999999  444321            0122221    1237999999999999999


Q ss_pred             EEeEeCC
Q psy15206        143 CVAQNGI  149 (232)
Q Consensus       143 C~~~~~~  149 (232)
                      |.+.|..
T Consensus       226 C~a~n~~  232 (257)
T 1f3r_B          226 CYQYNNG  232 (257)
T ss_dssp             EEEESSS
T ss_pred             EEEeCCC
Confidence            9999853

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.56  E-value=2.4e-14  Score=102.66  Aligned_cols=135  Identities=19%  Similarity=0.243  Sum_probs=88.8

Q ss_pred             eecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeC----------------cE--------------------------
Q psy15206         15 ILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN----------------FK--------------------------   52 (232)
Q Consensus        15 i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~----------------~~--------------------------   52 (232)
                      ++.. +..+.+.+|++++|.|.+.+.+.+.+.|+|.                +.                          
T Consensus         4 v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            4 VSQH-PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             EEEE-CSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred             cEEC-CcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence            4444 6778899999999999999989999999981                10                          


Q ss_pred             -----eeeeEEEEeee----------ecCceeecC------CcEEecCCCCceEeecCCcEEEEeeeccCCCC--eEEEE
Q psy15206         53 -----RLGRLHLAIPY----------TSPEAQVDT------PPVILNNSPQLSVAKEGQSVQLECHAEGHPIP--TISWR  109 (232)
Q Consensus        53 -----~~~~~~~~~~~----------~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~W~  109 (232)
                           +.|.|.|....          ....|.|..      +|.+....+....+..|+.+.|.|.+.+.+++  .+.|+
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  162 (246)
T 4dzb_B           83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  162 (246)
T ss_dssp             SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEE
Confidence                 01345554421          122444432      33333223333334458999999999886554  79999


Q ss_pred             eCCeeeCCCCcE---------------EeeCCeEEECCCCCCC-CeEEEEEeEeCCC
Q psy15206        110 RENNAILPNGQT---------------IFTGSTLQIPRITKED-RGAYYCVAQNGIG  150 (232)
Q Consensus       110 ~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~~-~g~y~C~~~~~~~  150 (232)
                      ++|..+......               ....+.|.|.....+| .|.|+|.+.|...
T Consensus       163 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~  219 (246)
T 4dzb_B          163 VNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  219 (246)
T ss_dssp             ETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCC
Confidence            999877542111               1112347788888788 8999999998643

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.56  E-value=3.9e-14  Score=87.01  Aligned_cols=88  Identities=24%  Similarity=0.438  Sum_probs=69.1

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEee----CCeEEECCCCCCCCeEEEEEeE
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFT----GSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~----~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      ||.+. ..+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....  ++...    ..+|.|.++..+|.|.|+|.+.
T Consensus         5 PP~i~-~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A            5 PPKIE-ALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             EEEEC-CCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEE-eCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            34443 45677888999999999999999999999999998875433  22221    2379999999999999999999


Q ss_pred             eCCCCceeeEEEEEEE
Q psy15206        147 NGIGRGARRKIEVKVE  162 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~  162 (232)
                      |..|. ....+.|.|.
T Consensus        84 N~~G~-~~~~~~l~V~   98 (100)
T 3knb_A           84 NEFGS-DSATVNIHIR   98 (100)
T ss_dssp             ETTEE-EEEEEEEEEE
T ss_pred             ECCCE-EEEEEEEEEE
Confidence            98886 5566666664

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.56  E-value=1.8e-14  Score=100.83  Aligned_cols=127  Identities=14%  Similarity=0.218  Sum_probs=85.6

Q ss_pred             ceEeecCCeEEEEEEecCCCCCeEEEEeCc---E--------------------------------------eeeeEEEE
Q psy15206         22 LSVAKEGQSVQLECHAEGHPIPTISWRRNF---K--------------------------------------RLGRLHLA   60 (232)
Q Consensus        22 ~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~---~--------------------------------------~~~~~~~~   60 (232)
                      ++.+.+|++++|.|.+.  +.+.+.|+|+.   .                                      +.|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            78899999999999998  88899999821   0                                      11355555


Q ss_pred             eeee--------cCceeec----CCcEEecCCCCceEeecCCcEEEEeeeccCC--CCeEEEEeCCeeeCCCC-------
Q psy15206         61 IPYT--------SPEAQVD----TPPVILNNSPQLSVAKEGQSVQLECHAEGHP--IPTISWRRENNAILPNG-------  119 (232)
Q Consensus        61 ~~~~--------~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~~~~~~~-------  119 (232)
                      ....        ...|.|.    .+|.+.. .+.......|+.+.|.|.+.+.+  .+.+.|+++|..+....       
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~-~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~  165 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTL-FPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSK  165 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCEEEE-ECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEE
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCeeEe-cCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceE
Confidence            4221        2345554    3444432 22222233699999999998853  46899999998774311       


Q ss_pred             ---cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        120 ---QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       120 ---~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                         ......+.|.|..+..+|.|.|+|.+.|..+.
T Consensus       166 ~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~  200 (211)
T 3tv3_L          166 QSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  200 (211)
T ss_dssp             CTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEE
T ss_pred             CCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCC
Confidence               11111246888888888999999999997643

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.55  E-value=5.5e-14  Score=99.82  Aligned_cols=146  Identities=21%  Similarity=0.335  Sum_probs=91.8

Q ss_pred             ceEeecCCcEEEEeeeccC--CCCeEEEEeCC--ee---e---C-----------CCCcEEee------CCeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGH--PIPTISWRREN--NA---I---L-----------PNGQTIFT------GSTLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~---~---~-----------~~~~~~~~------~~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|...+.  ....+.|++..  ..   +   .           ...++...      ..+|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS   88 (230)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence            4667889999999998652  34569999742  11   1   0           01222221      12499999999


Q ss_pred             CCCeEEEEEeEeCC-----CC--ceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeCC
Q psy15206        136 EDRGAYYCVAQNGI-----GR--GARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKDG  202 (232)
Q Consensus       136 ~~~g~y~C~~~~~~-----~~--~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~g  202 (232)
                      +|+|.|.|.+.+..     +.  .......+.|.    .+|.+...+....+..|+.+.|.|.+.+.++  +.+.|  +|
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~  166 (230)
T 3n9g_H           89 EDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NS  166 (230)
T ss_dssp             GGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GG
T ss_pred             hhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CC
Confidence            99999999998743     11  11123355553    3556654344344568999999999988543  35999  44


Q ss_pred             EEec-----------CCCeE----EEEEeccccCCceEEEEecC
Q psy15206        203 EIVV-----------NDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       203 ~~~~-----------~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+.           .+..|    .+.+......| |.|+|.|.
T Consensus       167 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~  209 (230)
T 3n9g_H          167 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  209 (230)
T ss_dssp             GTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEE
T ss_pred             cccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEE
Confidence            3221           22333    34455666678 99999974

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.55  E-value=9.6e-14  Score=99.08  Aligned_cols=132  Identities=18%  Similarity=0.366  Sum_probs=88.0

Q ss_pred             eecCCCcceEeecCCeEEEEEEecCCC----CCeEEEEeCc--E------------------------------------
Q psy15206         15 ILNNSTQLSVAKEGQSVQLECHAEGHP----IPTISWRRNF--K------------------------------------   52 (232)
Q Consensus        15 i~~~~~~~~~~~~G~~v~l~C~~~~~p----~~~~~W~~~~--~------------------------------------   52 (232)
                      |+.. |.++.+.+|++++|.|.+.+.+    .+.+.|+|+.  .                                    
T Consensus         4 v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (240)
T 1moe_A            4 LTQS-PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (240)
T ss_dssp             EEEE-CSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             eEee-CCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence            4444 6778899999999999999877    7889999841  0                                    


Q ss_pred             ---eeeeEEEEeeee-------cCceeecCCc-----EEecCCCCceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ce
Q psy15206         53 ---RLGRLHLAIPYT-------SPEAQVDTPP-----VILNNSPQLSVAKEGQSVQLECHAEGHPI--PTISWRRE--NN  113 (232)
Q Consensus        53 ---~~~~~~~~~~~~-------~~~l~v~~~p-----~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~  113 (232)
                         +.|.|.|.....       ...|.|..++     ......+....+.+|+++.|.|.+.+.+.  +.+.|+++  +.
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~  162 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ  162 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred             ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence               013445544211       3345655432     11111344567888999999999988763  58999996  22


Q ss_pred             eeC-----------------CCCcEEee------CCeEEECCCCCCCCeEEEEEeEe
Q psy15206        114 AIL-----------------PNGQTIFT------GSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus       114 ~~~-----------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+.                 ...++...      ...|.|.+++.+|+|.|+|.+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          163 GLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             CCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             CcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            210                 11222222      13699999999999999999984

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.55  E-value=2.5e-14  Score=87.90  Aligned_cols=68  Identities=12%  Similarity=0.282  Sum_probs=58.0

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----------CeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ||.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|||..+...           ....|.+.++..+|+|.|+|.|.
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   83 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG   83 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence            567777788888999999999999999999999999999887532           23467788889999999999873

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.55  E-value=7.3e-14  Score=92.91  Aligned_cols=104  Identities=22%  Similarity=0.381  Sum_probs=78.7

Q ss_pred             CceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-----CCeEEECCCCCCCCeE
Q psy15206         66 PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGA  140 (232)
Q Consensus        66 ~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~  140 (232)
                      ..+.+..+|.+.. .+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++...     ...|.|.++...|.|.
T Consensus        34 ~~~~v~~~P~~~~-~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~  112 (154)
T 1fhg_A           34 AEEKPHVKPYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK  112 (154)
T ss_dssp             CCCCCCEEEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEE
T ss_pred             hcccCCCCCeEEc-cCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEE
Confidence            4455566676665 456678889999999999999999999999999887665554432     2389999999999999


Q ss_pred             EEEEeEeCCCCceeeEEEEEEEeccEEEecc
Q psy15206        141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQS  171 (232)
Q Consensus       141 y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~  171 (232)
                      |+|.+.|..|. ....+.|.|..+|.+...+
T Consensus       113 Y~C~a~N~~G~-~~~~~~l~V~~~p~~~~~~  142 (154)
T 1fhg_A          113 YTCKAVNSLGE-ATCTAELLVETMGKEGEGE  142 (154)
T ss_dssp             EEEEEEETTEE-EEEEEEEEEECC-------
T ss_pred             EEEEEEECCCe-EEEEEEEEEeCcCcCCCCC
Confidence            99999998887 6677888888877765443

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.55  E-value=5.8e-14  Score=101.47  Aligned_cols=135  Identities=16%  Similarity=0.230  Sum_probs=80.7

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCc----E-----------------------------------
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNF----K-----------------------------------   52 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~----~-----------------------------------   52 (232)
                      +|.++.. +.++.+.+|++|+|.|.+.+.+.+.+.|+|..    .                                   
T Consensus         2 s~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   80 (259)
T 3omz_A            2 SSNLEGR-TKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLR   80 (259)
T ss_dssp             ----------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCE
T ss_pred             ccccccC-CceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEE
Confidence            4666666 78899999999999999998888899999810    0                                   


Q ss_pred             ---------eeeeEEEEeeee---------cCceeecCC----------------cEEecCCCCceEeecCCcEEEEeee
Q psy15206         53 ---------RLGRLHLAIPYT---------SPEAQVDTP----------------PVILNNSPQLSVAKEGQSVQLECHA   98 (232)
Q Consensus        53 ---------~~~~~~~~~~~~---------~~~l~v~~~----------------p~~~~~~~~~~~~~~g~~~~l~C~~   98 (232)
                               +.|.|.|.....         ...|.|..+                +..+...+....+.+|+++.|.|.+
T Consensus        81 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  160 (259)
T 3omz_A           81 MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY  160 (259)
T ss_dssp             EEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEE
T ss_pred             EEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEEC
Confidence                     013455544211         233555442                1122334566788899999999998


Q ss_pred             ccC-CCCeEEEEeCCe--eeC------------CCCcEEee------CCeEEECCCCCCCCeEEEEEeEe
Q psy15206         99 EGH-PIPTISWRRENN--AIL------------PNGQTIFT------GSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        99 ~~~-~~~~~~W~~~~~--~~~------------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+. +.+.+.|++...  .+.            ...++...      ...|.|.+++.+|+|.|.|.+..
T Consensus       161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            764 677899998532  110            01122221      24699999999999999999974

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.54  E-value=6.1e-14  Score=101.15  Aligned_cols=129  Identities=19%  Similarity=0.322  Sum_probs=84.8

Q ss_pred             CcceEeecCCeEEEEEEecCC--CCCeEEEEeCc-----------------------------------------Eeeee
Q psy15206         20 TQLSVAKEGQSVQLECHAEGH--PIPTISWRRNF-----------------------------------------KRLGR   56 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~--p~~~~~W~~~~-----------------------------------------~~~~~   56 (232)
                      ++.+.+.+|++++|.|.+.+.  +.+.+.|+|+.                                         .+.|.
T Consensus         9 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~   88 (256)
T 3ux9_B            9 PPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEAD   88 (256)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEE
Confidence            556889999999999999976  78899999831                                         01135


Q ss_pred             EEEEeee---------ecCceeecCCcE--------------------EecCCCCceEeecCCcEEEEeeeccCC--CCe
Q psy15206         57 LHLAIPY---------TSPEAQVDTPPV--------------------ILNNSPQLSVAKEGQSVQLECHAEGHP--IPT  105 (232)
Q Consensus        57 ~~~~~~~---------~~~~l~v~~~p~--------------------~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~  105 (232)
                      |.|....         ....|.|..++.                    .+. .+....+.+|+++.|.|.+.+.+  .+.
T Consensus        89 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~  167 (256)
T 3ux9_B           89 YYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLV-ESGGGLVQPGGSLRLSCAASGFTFSSYA  167 (256)
T ss_dssp             EEEEEEETTTTEEEECCCEEEEEC----------------------CCEEE-EECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred             EEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEE-cCCCeEEcCCCeEEEEEEEeCCcccccE
Confidence            6665432         134555554431                    111 12334577899999999998766  678


Q ss_pred             EEEEeCC--eee------CC-----------CCcEEee------CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206        106 ISWRREN--NAI------LP-----------NGQTIFT------GSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       106 ~~W~~~~--~~~------~~-----------~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +.|+++.  ..+      ..           ..++...      ...|.|.+++.+|+|.|.|.+.+..
T Consensus       168 v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          168 MSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             EEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence            9999863  221      00           1122211      1249999999999999999999853

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.54  E-value=6.9e-14  Score=87.26  Aligned_cols=99  Identities=26%  Similarity=0.463  Sum_probs=64.6

Q ss_pred             CceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCCCCCCeEEEE
Q psy15206         66 PEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYC  143 (232)
Q Consensus        66 ~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C  143 (232)
                      +.+.+..+|.+.. .+....+..|+.+.|.|.+.|.|.+.+.|++++..+........  ..+.|.|.++..+|.|.|+|
T Consensus         3 ~~v~~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   81 (108)
T 3kvq_A            3 LTVLERVAPTITG-NLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC   81 (108)
T ss_dssp             --------CCCBS-CCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEE
T ss_pred             eeECccCCCceec-CCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEE
Confidence            3455555666554 56677888999999999999999999999999988765444433  35689999999999999999


Q ss_pred             EeEeCCCCceeeEEEEEEEeccE
Q psy15206        144 VAQNGIGRGARRKIEVKVEFAPI  166 (232)
Q Consensus       144 ~~~~~~~~~~~~~~~l~v~~~p~  166 (232)
                      .+.|..|. ....+.+.|..+|.
T Consensus        82 ~a~n~~g~-~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           82 QACSVLGC-AKVEAFFIIEGAQE  103 (108)
T ss_dssp             EEC----C-EEEEEEEEEEC---
T ss_pred             EEEeCCCc-eEEEEEEEEeCCCc
Confidence            99998877 55667777776553

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.54  E-value=2.3e-14  Score=97.49  Aligned_cols=118  Identities=12%  Similarity=0.146  Sum_probs=78.8

Q ss_pred             cceEeecCCeEEEEEEecC--CCCCeEEEEeCcEee----------------------------------eeEEEEeeee
Q psy15206         21 QLSVAKEGQSVQLECHAEG--HPIPTISWRRNFKRL----------------------------------GRLHLAIPYT   64 (232)
Q Consensus        21 ~~~~~~~G~~v~l~C~~~~--~p~~~~~W~~~~~~~----------------------------------~~~~~~~~~~   64 (232)
                      ..+.+.+|++++|.|....  .+.+.|.|+|++..+                                  |.|.|.....
T Consensus         4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~   83 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST   83 (176)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEET
T ss_pred             eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeC
Confidence            3567899999999995433  556789999976321                                  2444443211


Q ss_pred             --------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCC
Q psy15206         65 --------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKE  136 (232)
Q Consensus        65 --------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~  136 (232)
                              .+.|.|..++      ........+..+.|.|.+.+.|.+.+.|++++..+....       .+.|..+..+
T Consensus        84 ~g~~~~~~~~~l~V~~~~------~~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~-------~~~i~~~~~~  150 (176)
T 1hng_A           84 NGTRILNKALDLRILEMV------SKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR-------QKTMSYQWTN  150 (176)
T ss_dssp             TCCEEEEEEEEEEEECCC------CCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEES-------SSEEEEECSC
T ss_pred             CCCEEEEEEEEEEEeCCC------CCCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCC-------cEEEEEEEcc
Confidence                    2233443321      111122235569999999999999999999998764322       2445577899


Q ss_pred             CCeEEEEEeEeCCCC
Q psy15206        137 DRGAYYCVAQNGIGR  151 (232)
Q Consensus       137 ~~g~y~C~~~~~~~~  151 (232)
                      |.|.|+|.+.|..|.
T Consensus       151 d~G~Y~C~a~N~~g~  165 (176)
T 1hng_A          151 LRAPFKCKAVNRVSQ  165 (176)
T ss_dssp             CSSCEEEEEEETTEE
T ss_pred             CCeEEEEEEEecCCC
Confidence            999999999998775

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.54  E-value=1e-13  Score=85.65  Aligned_cols=94  Identities=20%  Similarity=0.273  Sum_probs=73.3

Q ss_pred             eeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEE
Q psy15206         68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYC  143 (232)
Q Consensus        68 l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C  143 (232)
                      +.+..+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+....    ...|.|.++..+|.|.|.|
T Consensus         3 l~~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   81 (103)
T 3qp3_A            3 FTLDHAPRITL-RMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRA   81 (103)
T ss_dssp             TTTCEEEEEEE-CCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CCCCCCCEEEe-CCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEE
Confidence            34445666654 556778889999999999999999999999999887665554332    2369999999999999999


Q ss_pred             EeEeCCCCceeeEEEEEEEe
Q psy15206        144 VAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       144 ~~~~~~~~~~~~~~~l~v~~  163 (232)
                      .+.|..|. ......|.|..
T Consensus        82 ~a~N~~G~-~~~~~~l~V~~  100 (103)
T 3qp3_A           82 VCTNYKGE-ASDYATLDVTG  100 (103)
T ss_dssp             EEEETTEE-EEEEEEEEEEC
T ss_pred             EEEeCCCc-EEEEEEEEEEC
Confidence            99998876 45566666654

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.54  E-value=7.5e-13  Score=93.29  Aligned_cols=143  Identities=17%  Similarity=0.266  Sum_probs=98.7

Q ss_pred             CCceEeecCCcEEEEeeecc-CC---CCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCce-ee
Q psy15206         81 PQLSVAKEGQSVQLECHAEG-HP---IPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA-RR  155 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~-~~---~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~-~~  155 (232)
                      |....+..|+.+.|.|.+.+ .|   +..++|++++..+..      ....|.+..+...++|.|.|.+.+..+... ..
T Consensus         9 P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG------aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs   82 (304)
T 3shs_A            9 SNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN------NTATLTVADATSENAGSYKVTVQDTDTMTSVES   82 (304)
T ss_dssp             ESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC------CSSEEEESSCCGGGCEEEEEEEEETTTCCEEEC
T ss_pred             CCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC------CcceEEeeeccccCCeEEEEEEEECCCCeeeee
Confidence            44456678999999999865 45   346999999977542      234788999999999999999998765432 22


Q ss_pred             EEEEEEEeccEEEe-ccceeeeeccCeEEEEEEe--e-cCC-----CCeEEEeeCCEEecCCCeEEEEEeccccCCceEE
Q psy15206        156 KIEVKVEFAPIVTV-QSTRIGQALHHDMDLDCHI--E-AYP-----HPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSL  226 (232)
Q Consensus       156 ~~~l~v~~~p~~~~-~~~~~~~~~g~~~~l~C~~--~-~~p-----~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y  226 (232)
                      .+.+.....+.+.. .|.......|..+.|.+.+  . |.+     ...++|+|||..+.....+.+.  ..+..++|.|
T Consensus        83 ~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgAq~lT~s--S~TateaG~Y  160 (304)
T 3shs_A           83 EVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQ--EFTADKNGVY  160 (304)
T ss_dssp             CCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESSSEEEEC--SCCGGGCEEE
T ss_pred             eEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCcccccee--eEEecCCeEE
Confidence            22223222333333 3555555667888998876  4 344     3589999999988766544443  3455889999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      .|+++
T Consensus       161 tV~VT  165 (304)
T 3shs_A          161 TVKVW  165 (304)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99874

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.53  E-value=3e-13  Score=93.38  Aligned_cols=125  Identities=17%  Similarity=0.257  Sum_probs=79.4

Q ss_pred             CcceEeecCCeEEEEEEecC-CCCCeEEEEeCcEee------------------------------------------ee
Q psy15206         20 TQLSVAKEGQSVQLECHAEG-HPIPTISWRRNFKRL------------------------------------------GR   56 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~-~p~~~~~W~~~~~~~------------------------------------------~~   56 (232)
                      |..+.+.+|++|+|.|.+.+ .+.+.+.|++++..+                                          |.
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~   84 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGS   84 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEE
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCce
Confidence            67788999999999999985 455799999964311                                          12


Q ss_pred             EEEEeee------ecCceeecCCcEEecCCCCceEeecCC-cEEEEeeeccC-CCCeEEEEeCCeeeCCCCcEEeeCCeE
Q psy15206         57 LHLAIPY------TSPEAQVDTPPVILNNSPQLSVAKEGQ-SVQLECHAEGH-PIPTISWRRENNAILPNGQTIFTGSTL  128 (232)
Q Consensus        57 ~~~~~~~------~~~~l~v~~~p~~~~~~~~~~~~~~g~-~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~l  128 (232)
                      |.|....      ..+.|.|..++..............|. .+.|.|.+.+. +.+.+.|++++..+..       .+.|
T Consensus        85 Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~-------~~~l  157 (193)
T 2if7_A           85 YRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS-------QPNL  157 (193)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES-------SSEE
T ss_pred             EEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC-------CCeE
Confidence            3332211      134555554432111000111122455 79999999884 5789999999876532       3346


Q ss_pred             EECCCCCC-CCeEEEEEeEeCCCC
Q psy15206        129 QIPRITKE-DRGAYYCVAQNGIGR  151 (232)
Q Consensus       129 ~i~~~~~~-~~g~y~C~~~~~~~~  151 (232)
                      .|...... |.|.|+|.+.|..+.
T Consensus       158 ~i~~~~~~~d~G~Y~C~a~N~~g~  181 (193)
T 2if7_A          158 TVSWDPRISSEQDYTCIAENAVSN  181 (193)
T ss_dssp             EEEECTTTCSCCEEEEEEEETTEE
T ss_pred             EEEeccCcCCCCcEEEEEECCCCc
Confidence            66544444 899999999998765

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.53  E-value=1.6e-13  Score=98.34  Aligned_cols=132  Identities=17%  Similarity=0.324  Sum_probs=86.2

Q ss_pred             eecCCCcceEeecCCeEEEEEEecCCC-----CCeEEEEeCc----E---------------------------------
Q psy15206         15 ILNNSTQLSVAKEGQSVQLECHAEGHP-----IPTISWRRNF----K---------------------------------   52 (232)
Q Consensus        15 i~~~~~~~~~~~~G~~v~l~C~~~~~p-----~~~~~W~~~~----~---------------------------------   52 (232)
                      ++.. |.++.+.+|++++|.|.+.+.+     .+.+.|+|+.    .                                 
T Consensus         4 v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   82 (247)
T 1svz_A            4 MTQT-PLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   82 (247)
T ss_dssp             EEEE-CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             EEec-CCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence            4444 6788899999999999999876     6899999831    0                                 


Q ss_pred             ----eeeeEEEEeeee-------cCceeecCCc-------------EEecCCCCceEeecCCcEEEEeeeccCC--CCeE
Q psy15206         53 ----RLGRLHLAIPYT-------SPEAQVDTPP-------------VILNNSPQLSVAKEGQSVQLECHAEGHP--IPTI  106 (232)
Q Consensus        53 ----~~~~~~~~~~~~-------~~~l~v~~~p-------------~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~  106 (232)
                          +.|.|.|.....       ...|.|..++             ..+. .+....+.+|+++.|.|.+.+.+  .+.+
T Consensus        83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~~~v  161 (247)
T 1svz_A           83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQ-QSGPELKKPGETVKISCKATNYAFTDYSM  161 (247)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEE-ECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred             CCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEe-CCCceeecCCCcEEEEEEEcCcccCCcEE
Confidence                012444443111       2356665432             1222 22334578899999999998864  4689


Q ss_pred             EEEeCC--eee------C-----------CCCcEEee------CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206        107 SWRREN--NAI------L-----------PNGQTIFT------GSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus       107 ~W~~~~--~~~------~-----------~~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      .|++++  ..+      .           ...++...      ...|.|.+++.+|+|.|.|.+.+.
T Consensus       162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            999863  211      0           01222221      237999999999999999999984

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.53  E-value=7e-15  Score=103.04  Aligned_cols=131  Identities=16%  Similarity=0.245  Sum_probs=88.5

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEeCc--Ee---------------------------------------eeeEE
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNF--KR---------------------------------------LGRLH   58 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~--~~---------------------------------------~~~~~   58 (232)
                      |.++.+.+|++++|.|.+.+.+.+.+.|+|+.  ..                                       .|.|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            66788999999999999988777789999831  10                                       03555


Q ss_pred             EEeee---------ecCceeec----CCcEEecCCCCceEeecCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCcE--
Q psy15206         59 LAIPY---------TSPEAQVD----TPPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQT--  121 (232)
Q Consensus        59 ~~~~~---------~~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~~--  121 (232)
                      |....         ....|.|.    .+|.+.. ........+|+.+.|.|.+.+. |. +.+.|+++|..+......  
T Consensus        86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~-~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~  164 (212)
T 1nfd_E           86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTV-FPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTK  164 (212)
T ss_dssp             EEEEETTTTEEEECCCEEEEEECCCCBCCEEEC-CCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCC
T ss_pred             EEEEcccCcccccCCceEEEEccCCCCCCEEEe-eCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCC
Confidence            55541         12334442    3344332 2222234468899999999886 54 689999999877533110  


Q ss_pred             -------EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        122 -------IFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       122 -------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                             ....+.|.|.++..+|.|.|+|.+.|..+.
T Consensus       165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          165 PSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             CBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             ceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence                   111245888999999999999999997654

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.52  E-value=1e-13  Score=98.17  Aligned_cols=148  Identities=20%  Similarity=0.294  Sum_probs=89.8

Q ss_pred             ceEeecCCcEEEEeeeccC--CCCeEEEEeCC--ee---e---C-----------CCCcEEee------CCeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGH--PIPTISWRREN--NA---I---L-----------PNGQTIFT------GSTLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~---~---~-----------~~~~~~~~------~~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|...+.  ....+.|++..  ..   +   .           ...++...      ..+|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA   88 (226)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred             CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence            4677899999999998653  34579999842  11   0   0           01122211      12499999999


Q ss_pred             CCCeEEEEEeEeCCC--------CceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecCCC--CeEEEeeC
Q psy15206        136 EDRGAYYCVAQNGIG--------RGARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAYPH--PILYWAKD  201 (232)
Q Consensus       136 ~~~g~y~C~~~~~~~--------~~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~~~W~~~  201 (232)
                      +|+|.|.|.+.+..+        ........+.|.    .+|.+...+.......|+.+.|.|.+.++++  +.+.|...
T Consensus        89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W~~~  168 (226)
T 3mlr_H           89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSG  168 (226)
T ss_dssp             GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEECCc
Confidence            999999999876420        001122344443    3566654444444568999999999988543  46999221


Q ss_pred             CEE---------ecCCCeE----EEEEeccccCCceEEEEecC
Q psy15206        202 GEI---------VVNDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       202 g~~---------~~~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +..         ...++.|    .+.+......| |.|+|.|.
T Consensus       169 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~  210 (226)
T 3mlr_H          169 ALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  210 (226)
T ss_dssp             TCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEE
T ss_pred             cccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEE
Confidence            110         1123333    34455556677 99999874

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.52  E-value=1.6e-12  Score=107.14  Aligned_cols=172  Identities=14%  Similarity=0.171  Sum_probs=112.2

Q ss_pred             cCCeEEEEEEecCCCCCeEEEEeCcEeee-----eE--------------EEEe-----eee--cCceee---cCCcEEe
Q psy15206         27 EGQSVQLECHAEGHPIPTISWRRNFKRLG-----RL--------------HLAI-----PYT--SPEAQV---DTPPVIL   77 (232)
Q Consensus        27 ~G~~v~l~C~~~~~p~~~~~W~~~~~~~~-----~~--------------~~~~-----~~~--~~~l~v---~~~p~~~   77 (232)
                      .+.++.|.|.+.|.|.+.+.|.+++....     ++              .+..     .+.  .+.+..   ..+|.+.
T Consensus        90 ~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~  169 (731)
T 2v5y_A           90 PPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL  169 (731)
T ss_dssp             CSEEEEEEEEETTCCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC
T ss_pred             CcceEEEEEecCCCCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc
Confidence            35689999999999999999999663221     11              2211     111  111111   2345554


Q ss_pred             cCCCCceEeecCCcEEEEeeeccCCCCeEE-EE--eCCeeeCCCCcEEe----eCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         78 NNSPQLSVAKEGQSVQLECHAEGHPIPTIS-WR--RENNAILPNGQTIF----TGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        78 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~-W~--~~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                        .+....+..|+.+.|.|.+.|.|.+.+. |+  ++|..+........    ..+.|.|.++...|.|.|.|.+.|..|
T Consensus       170 --~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G  247 (731)
T 2v5y_A          170 --RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGG  247 (731)
T ss_dssp             --CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTE
T ss_pred             --cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCC
Confidence              4556788899999999999999999887 88  56655432211111    125899999999999999999999887


Q ss_pred             CceeeEEEEEEEeccEEEeccceeeeeccCeEEEEEEeecC----CCC--eEEEeeC
Q psy15206        151 RGARRKIEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAY----PHP--ILYWAKD  201 (232)
Q Consensus       151 ~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----p~~--~~~W~~~  201 (232)
                      ........+.|..+|.....+... ......+.|.|.....    +..  .+.|...
T Consensus       248 ~~~s~~~~l~V~~~P~~~~~p~~~-~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~  303 (731)
T 2v5y_A          248 VGISNYAELVVKEPPVPIAPPQLA-SVGATYLWIQLNANSINGDGPIVAREVEYCTA  303 (731)
T ss_dssp             EEECCCEEEEEECCCCBSSCCEEE-EECSSCEEEECCCSSBSSCSCCCEEEEEEEES
T ss_pred             CcceeeEEEEEecCCCCCCCccee-ccCCceEEEEeCCcccCCCCccEEEEEEEEEC
Confidence            645556677887776644333332 2345678888876322    222  3667654

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.8e-13  Score=83.27  Aligned_cols=91  Identities=32%  Similarity=0.550  Sum_probs=71.4

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC-CCc-EEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP-NGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .+|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+.. ..+ ....++.|.|.++..+|.|.|+|.+.|..
T Consensus         7 ~~P~i~~-~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~   85 (100)
T 2edj_A            7 GPPIILQ-GPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS   85 (100)
T ss_dssp             SSCEEEE-CCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSS
T ss_pred             CCCEEEe-CcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCC
Confidence            4555554 56667888999999999999999999999999988753 222 23346689999999999999999999988


Q ss_pred             CCceeeEEEEEEEec
Q psy15206        150 GRGARRKIEVKVEFA  164 (232)
Q Consensus       150 ~~~~~~~~~l~v~~~  164 (232)
                      |. ....+.|.|..+
T Consensus        86 g~-~~~~~~l~V~~~   99 (100)
T 2edj_A           86 GE-TSWSAVLDVTES   99 (100)
T ss_dssp             CC-CBCCEEEEEESC
T ss_pred             CC-EEEEEEEEEecC
Confidence            76 456667776654

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.52  E-value=1.2e-13  Score=96.63  Aligned_cols=130  Identities=15%  Similarity=0.209  Sum_probs=84.2

Q ss_pred             CcceEeecCCeEEEEEEecCCC---CCeEEEEeCcE--e---------------e------------------------e
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP---IPTISWRRNFK--R---------------L------------------------G   55 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p---~~~~~W~~~~~--~---------------~------------------------~   55 (232)
                      |.++.+.+|++++|.|.+.+.+   .+.+.|+|+..  .               .                        |
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            5678899999999999999866   47899998421  0               0                        2


Q ss_pred             eEEEEeeee-------cCceeec----CCcEEecCCCCceEeecCCcEEEEeeeccCC-CC-eEEEEeCCeeeCCCCc--
Q psy15206         56 RLHLAIPYT-------SPEAQVD----TPPVILNNSPQLSVAKEGQSVQLECHAEGHP-IP-TISWRRENNAILPNGQ--  120 (232)
Q Consensus        56 ~~~~~~~~~-------~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~-~~~W~~~~~~~~~~~~--  120 (232)
                      .|.|.....       ...|.|.    .+|.+....+. .....|+.+.|.|.+.+.+ ++ .+.|+++|..+.....  
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~  165 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPS-SEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETT  165 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEC
T ss_pred             EEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCC-HHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecC
Confidence            344433211       2234442    23333321121 2233688999999998854 33 7999999987754311  


Q ss_pred             --EE------eeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206        121 --TI------FTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       121 --~~------~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                        ..      ...+.|.|..+..+|.|.|+|.+.|...
T Consensus       166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  203 (212)
T 1q0x_L          166 QPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH  203 (212)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCc
Confidence              01      1123588889999999999999998643

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.52  E-value=1.8e-13  Score=96.33  Aligned_cols=142  Identities=15%  Similarity=0.158  Sum_probs=88.9

Q ss_pred             CcceEeecCCeEEEEEEecCCCCC---eEEEEeCcE--------------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIP---TISWRRNFK--------------------------------------------   52 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~---~~~W~~~~~--------------------------------------------   52 (232)
                      |+++.+..|++|+|.|.+.+.+.+   .+.|+|++.                                            
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            445678899999999999986655   489998421                                            


Q ss_pred             ------eeeeEEEEeeee-------cCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCC
Q psy15206         53 ------RLGRLHLAIPYT-------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPN  118 (232)
Q Consensus        53 ------~~~~~~~~~~~~-------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~  118 (232)
                            +.|.|.|.....       ...+.+..++.... .+.......+..+.+.|.+ .+.|++.+.|++++......
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~  166 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHA-EAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKD  166 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEE-EECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEE
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceee-cccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCC
Confidence                  114666655322       22344444444332 2222334456667777765 45777889999887654321


Q ss_pred             CcE-------EeeCCeEEECCCCCCCCeEEEEEeEeCCCCc-eeeEEEEEEE
Q psy15206        119 GQT-------IFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKVE  162 (232)
Q Consensus       119 ~~~-------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~  162 (232)
                      ...       ....+.|.|.++..+|.|.|+|.+.|..+.. ....+.|.|.
T Consensus       167 ~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~  218 (225)
T 4fmk_A          167 TQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVR  218 (225)
T ss_dssp             EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBT
T ss_pred             cceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEE
Confidence            111       1122469999999999999999999976542 3444555544

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.52  E-value=4.5e-14  Score=101.61  Aligned_cols=138  Identities=14%  Similarity=0.217  Sum_probs=89.0

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCC-----CCeEEEEeCcE----------------------------------
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHP-----IPTISWRRNFK----------------------------------   52 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p-----~~~~~W~~~~~----------------------------------   52 (232)
                      .+.++.. +.++.+.+|++++|.|.+.+.+     .+.+.|+|+..                                  
T Consensus        34 ~~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~  112 (252)
T 3bkj_L           34 DVLMTQT-PLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLR  112 (252)
T ss_dssp             CCCEEEE-CSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             ccEEEeC-CceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEE
Confidence            4555555 6788899999999999999876     58999998421                                  


Q ss_pred             -------eeeeEEEEeeee-------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeCCe
Q psy15206         53 -------RLGRLHLAIPYT-------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRENN  113 (232)
Q Consensus        53 -------~~~~~~~~~~~~-------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~  113 (232)
                             +.|.|.|.....       ...|.|..   +|.+....+. ....+|+.+.|.|.+.+ .|.+ .+.|+++|.
T Consensus       113 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  191 (252)
T 3bkj_L          113 ISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  191 (252)
T ss_dssp             ESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             ECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCC-hhhcCCCcEEEEEEEeeEeCCCcEEEEEECCe
Confidence                   002344433111       12455542   2333221121 12236889999999988 4443 799999998


Q ss_pred             eeCCC-Cc----------EEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        114 AILPN-GQ----------TIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       114 ~~~~~-~~----------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .+... ..          .....+.|.|.++..+|.|.|+|.+.|....
T Consensus       192 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          192 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             EECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             ecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            76433 00          0011235889999999999999999986543

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.51  E-value=6e-13  Score=97.36  Aligned_cols=142  Identities=20%  Similarity=0.318  Sum_probs=89.8

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCcE----e------------------e---------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNFK----R------------------L---------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~~----~------------------~---------------------   54 (232)
                      |.++.+.+|++|+|.|.+.+.+  .+.+.|+|+..    .                  .                     
T Consensus        33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  112 (282)
T 1qok_A           33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL  112 (282)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence            6788999999999999998864  67899998420    0                  0                     


Q ss_pred             -----eeEEEEeeee-----------cCceeecCCcE--------------EecCCCCceEeecCCcEEEEeeeccCCCC
Q psy15206         55 -----GRLHLAIPYT-----------SPEAQVDTPPV--------------ILNNSPQLSVAKEGQSVQLECHAEGHPIP  104 (232)
Q Consensus        55 -----~~~~~~~~~~-----------~~~l~v~~~p~--------------~~~~~~~~~~~~~g~~~~l~C~~~~~~~~  104 (232)
                           |.|.|.....           ...|.|..++.              .+...+....+.+|+++.|.|.+.+.+ +
T Consensus       113 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~  191 (282)
T 1qok_A          113 TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-S  191 (282)
T ss_dssp             CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-S
T ss_pred             ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-c
Confidence                 1333332111           12455544321              111124456688899999999999888 8


Q ss_pred             eEEEEe--CCeeeC------------CCCcEEe----eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206        105 TISWRR--ENNAIL------------PNGQTIF----TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       105 ~~~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      .+.|++  ++..+.            ...++..    ...+|.|.++..+|+|.|+|.+.+...........|.|.
T Consensus       192 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~  267 (282)
T 1qok_A          192 YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK  267 (282)
T ss_dssp             CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence            999999  454321            1122321    123799999999999999999987432222233344443

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.51  E-value=2.5e-13  Score=95.43  Aligned_cols=131  Identities=15%  Similarity=0.243  Sum_probs=83.6

Q ss_pred             CcceEeecCCeEEEEEEec-CCC-CCeEEEEeCcE-----------------------------------------eeee
Q psy15206         20 TQLSVAKEGQSVQLECHAE-GHP-IPTISWRRNFK-----------------------------------------RLGR   56 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~-~~p-~~~~~W~~~~~-----------------------------------------~~~~   56 (232)
                      |.++.+.+|++++|.|.+. +.+ .+.+.|+|+..                                         +.|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            5678899999999999954 443 57899998321                                         0024


Q ss_pred             EEEEeeee--------cCceeec---CCcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeCCeeeCCC-CcE-
Q psy15206         57 LHLAIPYT--------SPEAQVD---TPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRENNAILPN-GQT-  121 (232)
Q Consensus        57 ~~~~~~~~--------~~~l~v~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~~~-~~~-  121 (232)
                      |.|.....        ...|.|.   .+|.+....+.. ....|+.+.|.|.+.+ .|.+ .+.|+++|..+... ... 
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~  165 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSD-EQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESV  165 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEE
T ss_pred             EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCCh-hhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEec
Confidence            55544221        2234443   233333212221 1225889999999988 4554 79999999876443 010 


Q ss_pred             ---------EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        122 ---------IFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       122 ---------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                               ....+.|.|..+..+|.|.|+|.+.|....
T Consensus       166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          166 TEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             CCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             CcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence                     011236889999999999999999986543

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.51  E-value=2.2e-13  Score=82.86  Aligned_cols=81  Identities=22%  Similarity=0.430  Sum_probs=66.7

Q ss_pred             CCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         79 NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        79 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      ..+....+.+|+.+.|.|.+.+.| +.+.|++++..+....+.....+.|.|.++..+|.|.|.|.+.|..|. ....+.
T Consensus        14 ~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~-~~~~~~   91 (95)
T 2ckn_A           14 VEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGS-DTTYFS   91 (95)
T ss_dssp             TBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEE-EEEEEE
T ss_pred             cCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCc-EEEEEE
Confidence            345667888999999999999887 799999999888766666667889999999999999999999998776 444444


Q ss_pred             EEE
Q psy15206        159 VKV  161 (232)
Q Consensus       159 l~v  161 (232)
                      +.|
T Consensus        92 l~V   94 (95)
T 2ckn_A           92 VNV   94 (95)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.51  E-value=7.6e-14  Score=98.26  Aligned_cols=139  Identities=12%  Similarity=0.167  Sum_probs=84.5

Q ss_pred             cCCCeeecCCCcceE--eecCCeEEEEEEecCC---C-CCeEEEEeCcEee-----------------------------
Q psy15206         10 DTPPVILNNSTQLSV--AKEGQSVQLECHAEGH---P-IPTISWRRNFKRL-----------------------------   54 (232)
Q Consensus        10 ~~~P~i~~~~~~~~~--~~~G~~v~l~C~~~~~---p-~~~~~W~~~~~~~-----------------------------   54 (232)
                      ..+|.+.+. ++...  +.+|++++|.|.+.+.   | .+.+.|+|++...                             
T Consensus         7 ~~~p~v~~~-pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   85 (218)
T 2rgs_A            7 EGGPSVFIF-PPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW   85 (218)
T ss_dssp             --CCEEEEE-CCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred             CCCCEEEEE-CcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHc
Confidence            457888777 44444  8899999999999975   3 3799999965332                             


Q ss_pred             ---eeEEEEeeeecC------c----eeecCCcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeCCeeeCCCC
Q psy15206         55 ---GRLHLAIPYTSP------E----AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRENNAILPNG  119 (232)
Q Consensus        55 ---~~~~~~~~~~~~------~----l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~~~~  119 (232)
                         |.|.|.......      .    +.+..+|.+........ ...|+.+.|.|.+.| .|.+ .+.|+++|..+....
T Consensus        86 ~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~  164 (218)
T 2rgs_A           86 MSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAE-QLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK  164 (218)
T ss_dssp             HTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred             CCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChH-HhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce
Confidence               234444322211      1    12334454432222211 225899999999998 5665 899999998763211


Q ss_pred             c---EEeeCC------eEEECCCCCCCCeEEEEEeEeCCC
Q psy15206        120 Q---TIFTGS------TLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       120 ~---~~~~~~------~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .   ....++      .|.+.....+|.|.|+|.+.|...
T Consensus       165 ~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          165 DTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL  204 (218)
T ss_dssp             ECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred             ecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence            1   111222      244444444468999999999654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.50  E-value=1.7e-13  Score=95.65  Aligned_cols=137  Identities=11%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             CeeecCCCcceE-eecCCeEEEEEEecCCC----CCeEEEEeCcEee--------------------------------e
Q psy15206         13 PVILNNSTQLSV-AKEGQSVQLECHAEGHP----IPTISWRRNFKRL--------------------------------G   55 (232)
Q Consensus        13 P~i~~~~~~~~~-~~~G~~v~l~C~~~~~p----~~~~~W~~~~~~~--------------------------------~   55 (232)
                      |.+.+.+|.... +.+|++++|.|.+.+.+    ...+.|+|++...                                |
T Consensus         2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G   81 (207)
T 2vol_A            2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTC
T ss_pred             CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCC
Confidence            566665355444 89999999999999763    3589999965322                                2


Q ss_pred             eEEEEeeee--------cCce--eecCCcEEecCCCCceEeecCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc---
Q psy15206         56 RLHLAIPYT--------SPEA--QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ---  120 (232)
Q Consensus        56 ~~~~~~~~~--------~~~l--~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~---  120 (232)
                      .|.|.....        .+.+  .+..+|.+........ ...|+.+.|.|.+.|. |. ..+.|+++|..+.....   
T Consensus        82 ~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~  160 (207)
T 2vol_A           82 EFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQP  160 (207)
T ss_dssp             CEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCC
T ss_pred             EEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCc
Confidence            444443221        1111  3344555432222211 2258899999999884 44 38999999987632111   


Q ss_pred             EEeeCC------eEEECCCCCCCCeEEEEEeEeCCC
Q psy15206        121 TIFTGS------TLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       121 ~~~~~~------~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      ....++      .|.+.....+|.|.|+|.+.|...
T Consensus       161 ~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          161 IMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             EECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             eECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            111122      345555555688999999999654

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=3.4e-13  Score=85.47  Aligned_cols=93  Identities=18%  Similarity=0.303  Sum_probs=70.7

Q ss_pred             CCcEEecC--CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEE-ee--CCeEEECCCCCCCCeEEEEEeE
Q psy15206         72 TPPVILNN--SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI-FT--GSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        72 ~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~--~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      .+|.+...  ......+.+|+.+.|.|.+.|.|.+.+.|++++..+....... ..  ...|.|.++...|.|.|+|.+.
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   99 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ   99 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEE
Confidence            34555322  2456788899999999999999999999999998875322221 22  2359999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEecc
Q psy15206        147 NGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p  165 (232)
                      |..|. ....+.+.|..+|
T Consensus       100 N~~G~-~~~~~~l~V~~~P  117 (118)
T 2e7c_A          100 IENMK-DTATIRIRVVEKA  117 (118)
T ss_dssp             CSSCE-ECCEEEEEEECCC
T ss_pred             eCCCe-EEEEEEEEEEcCC
Confidence            98886 5667777776654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.50  E-value=1.9e-13  Score=103.47  Aligned_cols=104  Identities=19%  Similarity=0.272  Sum_probs=65.9

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC----cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG----QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK  156 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  156 (232)
                      +....+.+|+.+.|.|.+.| |.+.+.|++++.......    +....++.|.|.+++.+|+|.|+|.+.|..|. ....
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~-~~~~  330 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFN-ETLS  330 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSCE-EEEE
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCCc-cEEE
Confidence            44567889999999999998 889999999876543221    33446778999999999999999999998766 5566


Q ss_pred             EEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEE
Q psy15206        157 IEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILY  197 (232)
Q Consensus       157 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~  197 (232)
                      +.+.|...+           ..|+.++|.|.+.|.|.|.|+
T Consensus       331 ~~l~V~~~~-----------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          331 VELKVYNFT-----------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             EEEEEESSC-----------CC-------------------
T ss_pred             EEEEEEeee-----------ccCCceEEEEEeCCCCCCccc
Confidence            667664322           578899999999999998764

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.50  E-value=2.1e-14  Score=102.08  Aligned_cols=137  Identities=13%  Similarity=0.230  Sum_probs=76.8

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE--------------------------------------
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK--------------------------------------   52 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~--------------------------------------   52 (232)
                      ..+.+... |.++.+.+|++++|.|.+.+.+.+.+.|+|+..                                      
T Consensus        22 ~~~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  100 (233)
T 3bqu_C           22 AETTVTQS-PASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENM  100 (233)
T ss_dssp             -CCCEEEE-CSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC----
T ss_pred             cceeEEEc-CCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCC
Confidence            34556555 778889999999999999987777899998321                                      


Q ss_pred             ---eeeeEEEEeeee-------cCceeecC---CcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEEEEeCCeeeCC
Q psy15206         53 ---RLGRLHLAIPYT-------SPEAQVDT---PPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWRRENNAILP  117 (232)
Q Consensus        53 ---~~~~~~~~~~~~-------~~~l~v~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~  117 (232)
                         +.|.|.|.....       ...|.|..   +|.+....+. .....|+.+.|.|.+.+. |.+ .+.|+++|..+..
T Consensus       101 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  179 (233)
T 3bqu_C          101 LSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  179 (233)
T ss_dssp             -CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----C
T ss_pred             CHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCC-HHhhcCCceEEEEEEccccCCceEEEEEECCeeCCC
Confidence               013555544221       22445543   3333321222 122368899999999884 443 6999999876543


Q ss_pred             C-Cc----------EEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206        118 N-GQ----------TIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       118 ~-~~----------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      . ..          .....+.|.|..+..+|.|.|+|.+.|..
T Consensus       180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~  222 (233)
T 3bqu_C          180 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT  222 (233)
T ss_dssp             CEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC-
T ss_pred             CceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence            3 00          01112368888888899999999999864

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.50  E-value=3.5e-13  Score=82.64  Aligned_cols=88  Identities=20%  Similarity=0.312  Sum_probs=68.6

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe---eC--CeEEECCCCCCCCeEEEEEeEe
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF---TG--STLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~---~~--~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      +|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+...   ..  ..|.|.++..+|.|.|+|.+.|
T Consensus         5 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            5 APKIFE-RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCceEe-cCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            444443 56667888999999999999999999999999988765544332   22  3799999999999999999999


Q ss_pred             CCCCceeeEEEEEEE
Q psy15206        148 GIGRGARRKIEVKVE  162 (232)
Q Consensus       148 ~~~~~~~~~~~l~v~  162 (232)
                      ..|. ....+.+.|.
T Consensus        84 ~~g~-~~~~~~l~V~   97 (99)
T 1g1c_A           84 IAGE-TSSHAFLLVQ   97 (99)
T ss_dssp             TTEE-EEEEEEEEEE
T ss_pred             CCCc-EEEEEEEEEe
Confidence            8876 4455566554

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.50  E-value=3e-13  Score=96.83  Aligned_cols=135  Identities=19%  Similarity=0.245  Sum_probs=87.6

Q ss_pred             CeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeC--------------c---------------------------
Q psy15206         13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN--------------F---------------------------   51 (232)
Q Consensus        13 P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~--------------~---------------------------   51 (232)
                      +.++.. +.++.+.+|++++|.| ..+.+.+.+.|+|.              +                           
T Consensus         3 ~~v~~~-p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I   80 (245)
T 4ei6_B            3 PKVLQI-PSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKI   80 (245)
T ss_dssp             CCCEEE-CSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEE
T ss_pred             cceEeC-CceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEE
Confidence            445555 6778899999999999 66678889999981              0                           


Q ss_pred             -----EeeeeEEEEeee----------ecCceeec------CCcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEE
Q psy15206         52 -----KRLGRLHLAIPY----------TSPEAQVD------TPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISW  108 (232)
Q Consensus        52 -----~~~~~~~~~~~~----------~~~~l~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W  108 (232)
                           .+.|.|.|....          ....|.|.      .+|......+....+..|+.+.|.|.+.+ .|.+ .+.|
T Consensus        81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W  160 (245)
T 4ei6_B           81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW  160 (245)
T ss_dssp             CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence                 011355565531          12344554      23433322333333445899999999988 4444 7999


Q ss_pred             EeCCeeeCCCCc---------------EEeeCCeEEECCCCCCC-CeEEEEEeEeCC
Q psy15206        109 RRENNAILPNGQ---------------TIFTGSTLQIPRITKED-RGAYYCVAQNGI  149 (232)
Q Consensus       109 ~~~~~~~~~~~~---------------~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~  149 (232)
                      +++|..+.....               .....+.|.|.....+| .|.|+|.+.+..
T Consensus       161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~  217 (245)
T 4ei6_B          161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (245)
T ss_dssp             EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECC
T ss_pred             EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECC
Confidence            999987753211               11112347788887777 899999999864

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.50  E-value=1.4e-13  Score=96.86  Aligned_cols=130  Identities=20%  Similarity=0.333  Sum_probs=82.6

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCc--Ee------------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNF--KR------------------------------------------   53 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~--~~------------------------------------------   53 (232)
                      +.++.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..                                          
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL   86 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence            5678899999999999999764  6899999851  10                                          


Q ss_pred             ----eeeEEEEeeee----------cCceeecCC----cEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeCCe
Q psy15206         54 ----LGRLHLAIPYT----------SPEAQVDTP----PVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRENN  113 (232)
Q Consensus        54 ----~~~~~~~~~~~----------~~~l~v~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~  113 (232)
                          .|.|.|.....          ...|.|...    |.+....+ ...+..|+.+.|.|.+.+ .|.+ .+.|++++.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~  165 (219)
T 1c1e_H           87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (219)
T ss_dssp             CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECC-CSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecC-ccccccCCeEEEEEEcccccCCCeEEEEEeCCc
Confidence                02444443221          223455432    33322121 123457999999999998 8888 999999987


Q ss_pred             eeCC--CCc-----EEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        114 AILP--NGQ-----TIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       114 ~~~~--~~~-----~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .+..  ...     .....+.|.|..... |.|.|+|.+.|..+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~  209 (219)
T 1c1e_H          166 SSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASS  209 (219)
T ss_dssp             CTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGT
T ss_pred             ccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCC
Confidence            5311  000     011123688844444 569999999997654

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.49  E-value=2.1e-13  Score=98.34  Aligned_cols=146  Identities=22%  Similarity=0.362  Sum_probs=87.5

Q ss_pred             ceEeecCCcEEEEeeeccCC--CCeEEEEeCC--ee---e--------------CCCCcEEee------CCeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHP--IPTISWRREN--NA---I--------------LPNGQTIFT------GSTLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~--------------~~~~~~~~~------~~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|...+..  ...+.|++..  ..   +              ....++...      ..+|.|.+++.
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  111 (256)
T 3sob_H           32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRA  111 (256)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCc
Confidence            34677899999999986532  3569999742  11   0              001222221      12499999999


Q ss_pred             CCCeEEEEEeEeCCC---------C-ceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEEeecC-C-CCeEEEe
Q psy15206        136 EDRGAYYCVAQNGIG---------R-GARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCHIEAY-P-HPILYWA  199 (232)
Q Consensus       136 ~~~g~y~C~~~~~~~---------~-~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~~~W~  199 (232)
                      +|+|.|.|.+.+..+         . .......+.|.    .+|.+........+..|+.++|.|.+.+. | ...+.| 
T Consensus       112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W-  190 (256)
T 3sob_H          112 EDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-  190 (256)
T ss_dssp             GGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE-
T ss_pred             ccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE-
Confidence            999999999986421         0 01122345553    35566543333345689999999999874 4 336999 


Q ss_pred             eCCEEe-----------cCCCeE----EEEEeccccCCceEEEEecC
Q psy15206        200 KDGEIV-----------VNDEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       200 ~~g~~~-----------~~~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                       +|..+           ..+..|    .+.+......| |.|+|.|.
T Consensus       191 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~  235 (256)
T 3sob_H          191 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  235 (256)
T ss_dssp             -GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEE
T ss_pred             -CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEE
Confidence             43222           122333    34455566678 99999874

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.49  E-value=5e-13  Score=96.84  Aligned_cols=136  Identities=21%  Similarity=0.374  Sum_probs=89.4

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecCCC------CCeEEEEeCc--E--e-------------ee------------
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHP------IPTISWRRNF--K--R-------------LG------------   55 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p------~~~~~W~~~~--~--~-------------~~------------   55 (232)
                      ..+.++.. |.++.+.+|++++|.|.+.+.+      .+.+.|+|+.  .  .             .+            
T Consensus         4 ~~~~v~q~-p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~   82 (264)
T 2gjj_A            4 ADIVLTQT-PSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFT   82 (264)
T ss_dssp             CCCCEEEE-CSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE
T ss_pred             cccceEec-CCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEE
Confidence            34566666 7788999999999999999876      6789999831  1  0             11            


Q ss_pred             ------------eEEEEeeee-------cCceeecCCc-------------------EEecCCCCceEeecCCcEEEEee
Q psy15206         56 ------------RLHLAIPYT-------SPEAQVDTPP-------------------VILNNSPQLSVAKEGQSVQLECH   97 (232)
Q Consensus        56 ------------~~~~~~~~~-------~~~l~v~~~p-------------------~~~~~~~~~~~~~~g~~~~l~C~   97 (232)
                                  .|.|.....       ...|.|..++                   ..+. .+....+.+|+++.|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~G~~v~L~C~  161 (264)
T 2gjj_A           83 LTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQ-QSGPEVVKTGASVKISCK  161 (264)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEE-ECCCEEECTTCCEEEEEE
T ss_pred             EEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEe-CCCCEEEcCCCcEEEEEE
Confidence                        333332110       2346665542                   1111 122346788999999999


Q ss_pred             eccCCC--CeEEEEeCC--ee---eC---C-----------CCcEEee------CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         98 AEGHPI--PTISWRREN--NA---IL---P-----------NGQTIFT------GSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        98 ~~~~~~--~~~~W~~~~--~~---~~---~-----------~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      +.+.+.  +.+.|+++.  ..   +.   .           ..++...      ...|.|.+++.+|+|.|+|.+.+.
T Consensus       162 ~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          162 ASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            988764  689999863  21   10   0           1222221      247999999999999999999985

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.49  E-value=1.9e-13  Score=96.34  Aligned_cols=130  Identities=20%  Similarity=0.303  Sum_probs=84.1

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCcE--e----------------------e-------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNFK--R----------------------L-------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~~--~----------------------~-------------------   54 (232)
                      +.++.+.+|++++|.|.+.+.+  .+.+.|+|+..  .                      .                   
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMN   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEc
Confidence            5678899999999999999765  68999998420  0                      0                   


Q ss_pred             -------eeEEEEeee---------ecCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEEEEeCC
Q psy15206         55 -------GRLHLAIPY---------TSPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWRREN  112 (232)
Q Consensus        55 -------~~~~~~~~~---------~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~  112 (232)
                             |.|.|....         ....|.|..    +|.+....+ ...+.+|+.+.|.|.+.|. |.+ .+.|++++
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~  165 (220)
T 1pz5_B           87 NLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVP-GCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA  165 (220)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECC-CSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred             cCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEccc-ccccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence                   133333311         123444432    233322111 1234579999999999986 878 89999988


Q ss_pred             ee----eCCC---CcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        113 NA----ILPN---GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       113 ~~----~~~~---~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ..    ....   .......+.|.|..+..++ |.|+|.+.|..+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  210 (220)
T 1pz5_B          166 LSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASK  210 (220)
T ss_dssp             CCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGT
T ss_pred             cccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCcc
Confidence            63    1110   0122234568888888866 9999999998765

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.49  E-value=1.1e-13  Score=97.58  Aligned_cols=130  Identities=22%  Similarity=0.329  Sum_probs=83.8

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCc--Ee----------------------e-------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNF--KR----------------------L-------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~--~~----------------------~-------------------   54 (232)
                      +.++.+.+|++++|.|.+.+.+  .+.+.|+|+.  ..                      .                   
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   86 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence            5677899999999999999755  6789999831  00                      0                   


Q ss_pred             -------eeEEEEeeee-----------cCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEEEEe
Q psy15206         55 -------GRLHLAIPYT-----------SPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWRR  110 (232)
Q Consensus        55 -------~~~~~~~~~~-----------~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~  110 (232)
                             |.|.|.....           ...|.|..    +|.+....+. ..+..|+.+.|.|.+.|. |.+ .+.|++
T Consensus        87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  165 (222)
T 1q9r_B           87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNS  165 (222)
T ss_dssp             SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCC-SCCCCSSEEEEEEEEEEEBSSCCEEEEGG
T ss_pred             cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcccc-ccccCCCcEEEEEEEccEECCCCEEEEec
Confidence                   2344433211           12344432    2333221111 124478999999999885 777 899999


Q ss_pred             CCeeeCCC-------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        111 ENNAILPN-------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       111 ~~~~~~~~-------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ++..+...       .......+.|.|..+...| |.|+|.+.|..+.
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~  212 (222)
T 1q9r_B          166 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS  212 (222)
T ss_dssp             GTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             CCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCC
Confidence            88654211       0111122468899999889 9999999997665

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.49  E-value=4.6e-13  Score=81.12  Aligned_cols=87  Identities=26%  Similarity=0.396  Sum_probs=66.5

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eeeCCCCcEEe--eCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      +|.+.. .+....+..|+.+.|.|.+.|.|.|.+.|++++  ..+........  ..+.|.|.++..+|+|.|+|.+.|.
T Consensus         2 ~P~i~~-~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   80 (93)
T 1wit_A            2 KPKILT-ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECC-CCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEc-CCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcC
Confidence            455533 456678889999999999999999999999999  66644332222  2357999999999999999999998


Q ss_pred             CCCceeeEEEEEE
Q psy15206        149 IGRGARRKIEVKV  161 (232)
Q Consensus       149 ~~~~~~~~~~l~v  161 (232)
                      .|. ....+.+.|
T Consensus        81 ~G~-~~~~~~l~V   92 (93)
T 1wit_A           81 LGE-DEAIFEVIV   92 (93)
T ss_dssp             TEE-EEEEEEEEE
T ss_pred             CCe-EEEEEEEEE
Confidence            886 445555554

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.49  E-value=1.8e-13  Score=82.63  Aligned_cols=68  Identities=16%  Similarity=0.155  Sum_probs=60.0

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++.+...|....+..|+.+.|.|.+.|.|.+.+.|+|+|..+.......+.+.++...|+|.|.|.|.
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   70 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVY   70 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEE
Confidence            35566677777888999999999999999999999999999887777788899999999999999874

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.48  E-value=7.4e-13  Score=96.15  Aligned_cols=136  Identities=15%  Similarity=0.321  Sum_probs=86.1

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecCCC-----CCeEEEEeCc--Ee---------------e--------------
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHP-----IPTISWRRNF--KR---------------L--------------   54 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p-----~~~~~W~~~~--~~---------------~--------------   54 (232)
                      ..+.++.. |..+.+.+|++++|.|.+.+.+     .+.+.|+|+.  ..               .              
T Consensus        14 ~~~~v~~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L   92 (268)
T 1x9q_A           14 SDVVMTQT-PLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTL   92 (268)
T ss_dssp             CCCCEEEE-CSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEE
T ss_pred             ccceEEee-CCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEE
Confidence            34566655 7788899999999999998866     5789999832  00               1              


Q ss_pred             ----------eeEEEEeeee-------cCceeecCCcE-----------------------EecCCCCceEeecCCcEEE
Q psy15206         55 ----------GRLHLAIPYT-------SPEAQVDTPPV-----------------------ILNNSPQLSVAKEGQSVQL   94 (232)
Q Consensus        55 ----------~~~~~~~~~~-------~~~l~v~~~p~-----------------------~~~~~~~~~~~~~g~~~~l   94 (232)
                                |.|.|.....       ...|.|...+.                       .+. .+....+.+|+++.|
T Consensus        93 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~-~~~~~~v~~G~~v~L  171 (268)
T 1x9q_A           93 KINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLD-ETGGGLVQPGGAMKL  171 (268)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEE-EECCEEECTTCCEEE
T ss_pred             EECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEE-CCCceEecCCCcEEE
Confidence                      2333333111       23444443211                       111 123456778999999


Q ss_pred             EeeeccCCC--CeEEEEeCC--eee-------------------CCCCcEEee------CCeEEECCCCCCCCeEEEEEe
Q psy15206         95 ECHAEGHPI--PTISWRREN--NAI-------------------LPNGQTIFT------GSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        95 ~C~~~~~~~--~~~~W~~~~--~~~-------------------~~~~~~~~~------~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      .|.+.+.+.  +.+.|+++.  ..+                   ....++...      ...|.|.+++.+|+|.|+|.+
T Consensus       172 ~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a  251 (268)
T 1x9q_A          172 SCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTG  251 (268)
T ss_dssp             EEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEE
Confidence            999987653  689999852  221                   012233221      247999999999999999999


Q ss_pred             EeC
Q psy15206        146 QNG  148 (232)
Q Consensus       146 ~~~  148 (232)
                      .+.
T Consensus       252 ~~~  254 (268)
T 1x9q_A          252 ASY  254 (268)
T ss_dssp             EET
T ss_pred             ccC
Confidence            863

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.48  E-value=1.8e-12  Score=91.82  Aligned_cols=142  Identities=19%  Similarity=0.278  Sum_probs=90.2

Q ss_pred             CCCceEeecCCcEEEEeeeccCC--CCeEEEEeCC--ee---eC---------CCCcEEee------CCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NA---IL---------PNGQTIFT------GSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~~---------~~~~~~~~------~~~l~i~~~~~~~  137 (232)
                      .+....+.+|+++.|.|.+.+.+  ...+.|++..  ..   +.         ...++...      ..+|.|.+++.+|
T Consensus         7 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   86 (229)
T 1hxm_A            7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD   86 (229)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             CCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhH
Confidence            35566788999999999987544  3579999853  11   10         12333322      1379999999999


Q ss_pred             CeEEEEEeEeCC------CC-ceeeEEEEEEEe------ccEEEeccceeeeeccCeEEEEEEeecCC-CC-eEEEeeCC
Q psy15206        138 RGAYYCVAQNGI------GR-GARRKIEVKVEF------APIVTVQSTRIGQALHHDMDLDCHIEAYP-HP-ILYWAKDG  202 (232)
Q Consensus       138 ~g~y~C~~~~~~------~~-~~~~~~~l~v~~------~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~-~~~W~~~g  202 (232)
                      .|.|.|.+.+..      .. .......|.|..      +|.+...       . ..+.|.|.+.|+. .+ .+.|+++ 
T Consensus        87 sg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~~P~v~~~-------~-~~~~L~C~~~g~~P~~i~v~W~~~-  157 (229)
T 1hxm_A           87 EGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHTKPSVFVM-------K-NGTNVACLVKEFYPKDIRINLVSS-  157 (229)
T ss_dssp             CEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCBCCEEEEE-------E-ETTEEEEEEESCBSSCCEEEEECS-
T ss_pred             CeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCcCCcEEEc-------C-CCCeEEEEEEEEeCCCEEEEEecC-
Confidence            999999998752      11 111234555653      3433321       1 1258999998864 43 7999998 


Q ss_pred             EEec---------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        203 EIVV---------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       203 ~~~~---------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+.         .++.|.+... ....|.|.|+|.|.
T Consensus       158 ~~~~~~~~~~~~~~dg~y~~~~~-~~~~~~~~ytC~V~  194 (229)
T 1hxm_A          158 KKITEFDPAIVISPSGKYNAVKL-GKYEDSNSVTCSVQ  194 (229)
T ss_dssp             SEEEECCCEEEECTTSSEEEEEE-EEETTTTTCEEEEE
T ss_pred             CEEecCccceEECCCCcEEEEEC-cccCCCCcEEEEEE
Confidence            5543         2345655522 23367899999874

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.8e-13  Score=83.11  Aligned_cols=91  Identities=27%  Similarity=0.464  Sum_probs=69.3

Q ss_pred             eecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-eCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-TGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        69 ~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+..+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ ....|.|.++..+|.|.|+|.+.|
T Consensus         7 ~~~~~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   85 (99)
T 2yr3_A            7 GMEVAPSFSS-VLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAEN   85 (99)
T ss_dssp             CCCEEEEEEE-CCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEEC
T ss_pred             CcccCCceee-cCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEE
Confidence            3445566654 46667888999999999999999999999999987754433322 235799999999999999999999


Q ss_pred             CCCCceeeEEEEEE
Q psy15206        148 GIGRGARRKIEVKV  161 (232)
Q Consensus       148 ~~~~~~~~~~~l~v  161 (232)
                      ..|. ....+.+.|
T Consensus        86 ~~g~-~~~~~~l~V   98 (99)
T 2yr3_A           86 ALGQ-VSCSAWVTV   98 (99)
T ss_dssp             SSCE-EEEECCEEE
T ss_pred             CCCe-EEEEEEEEE
Confidence            8876 444444443

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.48  E-value=1.2e-12  Score=96.27  Aligned_cols=130  Identities=18%  Similarity=0.321  Sum_probs=85.3

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCcE----e------------------e---------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNFK----R------------------L---------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~~----~------------------~---------------------   54 (232)
                      +..+.+.+|++++|.|.+.+.+  .+.+.|+|+..    .                  .                     
T Consensus        29 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  108 (291)
T 2gki_A           29 SGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSL  108 (291)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSC
T ss_pred             CCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcC
Confidence            5678899999999999998766  57899998310    0                  0                     


Q ss_pred             -----eeEEEEeeee-----------cCceeecCC---------------cEEecCCCCceEeecCCcEEEEeeeccCCC
Q psy15206         55 -----GRLHLAIPYT-----------SPEAQVDTP---------------PVILNNSPQLSVAKEGQSVQLECHAEGHPI  103 (232)
Q Consensus        55 -----~~~~~~~~~~-----------~~~l~v~~~---------------p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~  103 (232)
                           |.|.|.....           ...|.|..+               +..+...+....+.+|+++.|.|.+.+.+.
T Consensus       109 ~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  188 (291)
T 2gki_A          109 TSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLF  188 (291)
T ss_dssp             CGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCE
T ss_pred             CHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCccc
Confidence                 2333433111           124555441               111222345567889999999999988776


Q ss_pred             C------eEEEEeCC--eee---C-C--------CCcEEe--e--CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206        104 P------TISWRREN--NAI---L-P--------NGQTIF--T--GSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       104 ~------~~~W~~~~--~~~---~-~--------~~~~~~--~--~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +      .+.|+++.  ..+   . .        ..++..  .  ..+|.|.++..+|+|.|+|.+.+..
T Consensus       189 ~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          189 NSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             ETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            5      89999963  211   0 0        122221  1  2379999999999999999999853

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.47  E-value=2.7e-13  Score=83.09  Aligned_cols=69  Identities=14%  Similarity=0.169  Sum_probs=58.0

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe----------EEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY----------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|+|..+....+          ..|.+.++..+|+|.|+|.|.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   82 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEE
Confidence            356777777888899999999999999999999999999988765433          357778888999999999874

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.47  E-value=8.1e-13  Score=80.93  Aligned_cols=88  Identities=24%  Similarity=0.472  Sum_probs=68.4

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeC----CeEEECCCCCCCCeEEEEEeEeC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG----STLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      +|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+.....    ..|.|.++..+|.|.|.|.+.|.
T Consensus         6 ~P~i~~-~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~   84 (99)
T 3puc_A            6 KPVIVT-GLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNS   84 (99)
T ss_dssp             EEEEEE-CCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEe-cCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEeC
Confidence            444443 4566788899999999999999999999999998876555543321    26999999999999999999998


Q ss_pred             CCCceeeEEEEEEE
Q psy15206        149 IGRGARRKIEVKVE  162 (232)
Q Consensus       149 ~~~~~~~~~~l~v~  162 (232)
                      .|. ....+.+.|.
T Consensus        85 ~g~-~~~~~~l~V~   97 (99)
T 3puc_A           85 AGS-VSSSCKLTIK   97 (99)
T ss_dssp             TEE-EEEEEEEEEE
T ss_pred             CCc-EeEEEEEEEE
Confidence            776 4555555553

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.47  E-value=3.7e-13  Score=95.34  Aligned_cols=130  Identities=21%  Similarity=0.282  Sum_probs=79.8

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCc--Ee--------------------ee--------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNF--KR--------------------LG--------------------   55 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~--~~--------------------~~--------------------   55 (232)
                      +.++.+.+|++|+|.|.+.+.+  .+.+.|+|+.  ..                    .+                    
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCC
Confidence            5678899999999999999866  6789999842  00                    01                    


Q ss_pred             ------eEEEEeee-------ecCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEEEEeCCeeeC
Q psy15206         56 ------RLHLAIPY-------TSPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWRRENNAIL  116 (232)
Q Consensus        56 ------~~~~~~~~-------~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~  116 (232)
                            .|.|....       ....|.|..    +|.+....+. ..+..|+.+.|.|.+.|. |.+ .+.|++++..+.
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~  165 (227)
T 1mju_H           87 TSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG  165 (227)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGGTBCTT
T ss_pred             CcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCC
Confidence                  23332211       023455543    2333321222 234578999999999884 666 899999886531


Q ss_pred             C--CC-----cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        117 P--NG-----QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       117 ~--~~-----~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .  ..     ......+.|.|..+..+| |.|+|.+.|....
T Consensus       166 ~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  206 (227)
T 1mju_H          166 VHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  206 (227)
T ss_dssp             EEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGT
T ss_pred             cEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCC
Confidence            0  00     111223568898988878 9999999996543

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.47  E-value=3.7e-13  Score=97.67  Aligned_cols=137  Identities=18%  Similarity=0.209  Sum_probs=88.0

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCc--E-------------------------------------
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNF--K-------------------------------------   52 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~--~-------------------------------------   52 (232)
                      .+.++.. +.++.+.+|++++|.|.+. .+.+.+.|+|..  .                                     
T Consensus        26 ~~~v~~~-p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (268)
T 3pl6_D           26 GAGVSQT-PSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLK  103 (268)
T ss_dssp             -SSCBCC-CSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEE
T ss_pred             CceeEeC-CCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEE
Confidence            4555555 7778899999999999987 477899999810  0                                     


Q ss_pred             -------eeeeEEEEeeee--------cCceeecC------CcEEecCCCCceEeecCCcEEEEeeeccCCCC--eEEEE
Q psy15206         53 -------RLGRLHLAIPYT--------SPEAQVDT------PPVILNNSPQLSVAKEGQSVQLECHAEGHPIP--TISWR  109 (232)
Q Consensus        53 -------~~~~~~~~~~~~--------~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~W~  109 (232)
                             +.|.|.|.....        ...|.|..      +|......+....+..|+.+.|.|.+.+.+++  .+.|+
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  183 (268)
T 3pl6_D          104 IQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  183 (268)
T ss_dssp             ECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             ECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEE
Confidence                   113555554320        22444443      34333223333334458999999999885544  79999


Q ss_pred             eCCeeeCCCC---------------cEEeeCCeEEECCCCCCC-CeEEEEEeEeCCC
Q psy15206        110 RENNAILPNG---------------QTIFTGSTLQIPRITKED-RGAYYCVAQNGIG  150 (232)
Q Consensus       110 ~~~~~~~~~~---------------~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~~  150 (232)
                      ++|..+....               ......+.|.+......| .|.|+|.+.+...
T Consensus       184 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l  240 (268)
T 3pl6_D          184 VNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  240 (268)
T ss_dssp             ESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             ECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence            9998774321               111112356777777777 9999999998643

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.47  E-value=1.6e-12  Score=79.80  Aligned_cols=83  Identities=25%  Similarity=0.466  Sum_probs=66.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc--EEe-eC--CeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIF-TG--STLQIPRITKEDRGAYYCVAQNGIGRGAR  154 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~--~~~-~~--~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  154 (232)
                      .+....+..|+.+.|.|.+.|.|.+.+.|++++..+.....  ... ..  ..|.|.++...|.|.|+|.+.|..|. ..
T Consensus        11 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~   89 (100)
T 2kdg_A           11 VPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGE-AT   89 (100)
T ss_dssp             CCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEE-EE
T ss_pred             CCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCe-EE
Confidence            56667888999999999999999999999999988765432  222 22  27999999999999999999998877 55


Q ss_pred             eEEEEEEEe
Q psy15206        155 RKIEVKVEF  163 (232)
Q Consensus       155 ~~~~l~v~~  163 (232)
                      ..+.|.|..
T Consensus        90 ~~~~l~V~~   98 (100)
T 2kdg_A           90 FTVQLDVLA   98 (100)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEEe
Confidence            666766654

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.47  E-value=6.6e-13  Score=83.86  Aligned_cols=93  Identities=29%  Similarity=0.474  Sum_probs=72.5

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC-CCcEEee--C-C--eEEECCCCCCCCeEEEEEe
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP-NGQTIFT--G-S--TLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~~~~~~--~-~--~l~i~~~~~~~~g~y~C~~  145 (232)
                      .+|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ..+....  . +  .|.|.++..+|.|.|+|.+
T Consensus        14 ~~p~f~~-~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           14 RAPMFIY-KPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             BCCCBSS-CCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCeEEe-CCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            3455543 56778889999999999999999999999999988754 2333221  1 1  7999999999999999999


Q ss_pred             EeCCCCceeeEEEEEEEeccE
Q psy15206        146 QNGIGRGARRKIEVKVEFAPI  166 (232)
Q Consensus       146 ~~~~~~~~~~~~~l~v~~~p~  166 (232)
                      .|..|. ....+.|.|..+|.
T Consensus        93 ~N~~G~-~~~~~~l~V~~~p~  112 (116)
T 2kkq_A           93 VNEAGV-TTCNTRLDVTARPN  112 (116)
T ss_dssp             EETTEE-EEEEEEEEEECCSC
T ss_pred             EcCCCe-EEEEEEEEEeCCCC
Confidence            998876 56677788776654

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.47  E-value=2.7e-12  Score=88.98  Aligned_cols=123  Identities=19%  Similarity=0.226  Sum_probs=84.0

Q ss_pred             eEeecCCeEEEEEEecCCCCC--eEEEEeCcE----------------------eeeeEEEEeeee------cCceeecC
Q psy15206         23 SVAKEGQSVQLECHAEGHPIP--TISWRRNFK----------------------RLGRLHLAIPYT------SPEAQVDT   72 (232)
Q Consensus        23 ~~~~~G~~v~l~C~~~~~p~~--~~~W~~~~~----------------------~~~~~~~~~~~~------~~~l~v~~   72 (232)
                      +.+.+|++++|.|.+ +.|.+  .|+|++...                      +.|.|.|.....      .+.|+|+.
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~   95 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYA   95 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEe
Confidence            689999999999999 77767  999998321                      113566655222      67888888


Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccC-CC----CeEEEEeCCeeeCCCCc---EE---------------eeCCeEE
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGH-PI----PTISWRRENNAILPNGQ---TI---------------FTGSTLQ  129 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~----~~~~W~~~~~~~~~~~~---~~---------------~~~~~l~  129 (232)
                      +|......+.  ....|+.+ |.|.+.+. |.    +.+.|++++..+.....   ..               ...+.+.
T Consensus        96 ~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~  172 (210)
T 1gsm_A           96 FPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWR  172 (210)
T ss_dssp             CCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEE
T ss_pred             cCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEe
Confidence            8865543332  55567888 99999884 63    47999999988743211   11               0112344


Q ss_pred             ECCCCCCCCeEEEEEeEeCC
Q psy15206        130 IPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       130 i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +.....++.+.|+|.+.+..
T Consensus       173 ~~~~~~D~~~~~tC~a~~~L  192 (210)
T 1gsm_A          173 LPPLGTPVPPALYCQATMRL  192 (210)
T ss_dssp             CCCCCSSCCSEEEEEEEEEE
T ss_pred             ecCCcccCCceEEEEEEeeC
Confidence            44666666789999999864

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.46  E-value=4.5e-13  Score=97.89  Aligned_cols=139  Identities=21%  Similarity=0.295  Sum_probs=87.7

Q ss_pred             CCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE--------------------------------------
Q psy15206         11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK--------------------------------------   52 (232)
Q Consensus        11 ~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~--------------------------------------   52 (232)
                      ..+.++.. +.++.+.+|++++|.|.+.+.+.+.+.|+|+..                                      
T Consensus        23 ~~~~v~~~-p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~s  101 (279)
T 2wbj_D           23 GGAVVSQH-PSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLST  101 (279)
T ss_dssp             CCCCEEEE-CSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEE
T ss_pred             ccceEEeC-CCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEE
Confidence            35666665 778999999999999999888888999998420                                      


Q ss_pred             ---------eeeeEEEEeee------------ecCceeecC------CcEEecCCCCceEeecCCcEEEEeeeccC-CC-
Q psy15206         53 ---------RLGRLHLAIPY------------TSPEAQVDT------PPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-  103 (232)
Q Consensus        53 ---------~~~~~~~~~~~------------~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-  103 (232)
                               +.|.|.|....            ....|.|..      +|.+....+....+..|+.+.|.|.+.+. |. 
T Consensus       102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  181 (279)
T 2wbj_D          102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  181 (279)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSC
T ss_pred             EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCC
Confidence                     00244444432            022344432      23222211222223358899999999885 43 


Q ss_pred             CeEEEEeCCeeeCCCCcE---------------EeeCCeEEECCCCCCC-CeEEEEEeEeCCC
Q psy15206        104 PTISWRRENNAILPNGQT---------------IFTGSTLQIPRITKED-RGAYYCVAQNGIG  150 (232)
Q Consensus       104 ~~~~W~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~~-~g~y~C~~~~~~~  150 (232)
                      +.+.|++++..+......               ....+.|.|......| .|.|+|.+.|...
T Consensus       182 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~  244 (279)
T 2wbj_D          182 VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  244 (279)
T ss_dssp             EEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCB
T ss_pred             cEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCC
Confidence            689999999876432111               1112347777777654 6789999998653

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=3.7e-13  Score=85.33  Aligned_cols=92  Identities=28%  Similarity=0.502  Sum_probs=72.1

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC-CCc-EEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP-NGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      +|.+. ..+....+..|+.+.|.|.+.|.|.+.+.|++++..+.. ..+ ....++.|.|.++..+|.|.|+|.+.|..|
T Consensus         8 pP~i~-~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   86 (118)
T 2eo9_A            8 PPVIR-QGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG   86 (118)
T ss_dssp             SCCCS-BCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSSC
T ss_pred             CCEEE-cCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCCC
Confidence            44443 356667888999999999999999999999999887753 222 234567899999999999999999999887


Q ss_pred             CceeeEEEEEEEeccE
Q psy15206        151 RGARRKIEVKVEFAPI  166 (232)
Q Consensus       151 ~~~~~~~~l~v~~~p~  166 (232)
                      . ....+.|.|..++.
T Consensus        87 ~-~~~~~~l~V~~~~~  101 (118)
T 2eo9_A           87 E-ATWSAYIEVQEFGV  101 (118)
T ss_dssp             E-EEEECCEEEECCSC
T ss_pred             c-EEEEEEEEEEeCCC
Confidence            7 55666777776543

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=5.7e-13  Score=81.77  Aligned_cols=83  Identities=16%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             CCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-C---CeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206         79 NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-G---STLQIPRITKEDRGAYYCVAQNGIGRGAR  154 (232)
Q Consensus        79 ~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~---~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  154 (232)
                      ..+....+.+|+.+.|.|.+  .|.+.+.|+++|..+....+.... .   ..|.|.++..+|.|.|+|.+.|.   ...
T Consensus        12 ~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~---~~~   86 (100)
T 2yuz_A           12 TPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDAY---NVT   86 (100)
T ss_dssp             BCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESSS---CCC
T ss_pred             ccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcCC---Cee
Confidence            35667788899999999999  688899999999998766554432 2   37999999999999999999987   244


Q ss_pred             eEEEEEEEeccE
Q psy15206        155 RKIEVKVEFAPI  166 (232)
Q Consensus       155 ~~~~l~v~~~p~  166 (232)
                      ....|.|..+|.
T Consensus        87 ~~a~L~V~~~P~   98 (100)
T 2yuz_A           87 LPAKVHVISGPS   98 (100)
T ss_dssp             EEEEEEEECCSC
T ss_pred             EEEEEEEeCCCC
Confidence            667778877663

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.46  E-value=6.8e-13  Score=94.69  Aligned_cols=134  Identities=18%  Similarity=0.249  Sum_probs=87.1

Q ss_pred             eeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCc------------------------------------------
Q psy15206         14 VILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNF------------------------------------------   51 (232)
Q Consensus        14 ~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~------------------------------------------   51 (232)
                      .++.. +.++.+.+|++++|.|.+.+ +.+.+.|+|..                                          
T Consensus         4 ~v~~~-p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   81 (240)
T 3q5y_A            4 GVVQS-PRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   81 (240)
T ss_dssp             CCEEE-CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred             ccccC-cceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence            34444 67788999999999999986 77899999810                                          


Q ss_pred             ---EeeeeEEEEeee---------ecCceeec------CCcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeC
Q psy15206         52 ---KRLGRLHLAIPY---------TSPEAQVD------TPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRE  111 (232)
Q Consensus        52 ---~~~~~~~~~~~~---------~~~~l~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~  111 (232)
                         .+.|.|.|....         ....|.|.      .+|......+....+..|+.+.|.|.+.+ .|.+ .+.|+++
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~  161 (240)
T 3q5y_A           82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN  161 (240)
T ss_dssp             CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEEC
Confidence               011356665531         02334443      23333322333333445889999999988 5555 6899999


Q ss_pred             CeeeCCCCcE-----Ee------eCCeEEECCCCCCC-CeEEEEEeEeCC
Q psy15206        112 NNAILPNGQT-----IF------TGSTLQIPRITKED-RGAYYCVAQNGI  149 (232)
Q Consensus       112 ~~~~~~~~~~-----~~------~~~~l~i~~~~~~~-~g~y~C~~~~~~  149 (232)
                      |..+......     ..      ..+.|.|......| .|.|+|.+.|..
T Consensus       162 g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~  211 (240)
T 3q5y_A          162 GKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHG  211 (240)
T ss_dssp             TEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECC
T ss_pred             CEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCC
Confidence            9887542211     11      12348888888888 679999999864

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.46  E-value=7.6e-12  Score=94.30  Aligned_cols=122  Identities=20%  Similarity=0.353  Sum_probs=85.9

Q ss_pred             CCCceEeecCCcEEEEeeeccCC--------------CCeEEEEeC--Cee--e--C-C---------C-Cc--E-----
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP--------------IPTISWRRE--NNA--I--L-P---------N-GQ--T-----  121 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~--------------~~~~~W~~~--~~~--~--~-~---------~-~~--~-----  121 (232)
                      .+..+.+..|+++.|.|.....+              ...+.|++.  ++.  +  . .         . ..  +     
T Consensus       164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~  243 (401)
T 3f8u_B          164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD  243 (401)
T ss_dssp             SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred             CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence            34557788999999999975322              246899864  221  1  0 0         0 00  1     


Q ss_pred             ------EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEeccEEEeccceee-eeccC-eEEEEEEeecC-C
Q psy15206        122 ------IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVTVQSTRIG-QALHH-DMDLDCHIEAY-P  192 (232)
Q Consensus       122 ------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~-~~~g~-~~~l~C~~~~~-p  192 (232)
                            ...+.+|.|.+++.+|.|.|.|.+.+..+. ....+.+.|..+|.+...+.... ...|+ .++|.|.+.++ |
T Consensus       244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP  322 (401)
T 3f8u_B          244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQ-GQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYP  322 (401)
T ss_dssp             CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBS
T ss_pred             cccccccCCcEEEEECcCCHhhCceEEEEEEecccc-eeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcC
Confidence                  113458999999999999999999987554 45667888888998877665543 34676 79999999885 5


Q ss_pred             C--CeEEEe-eCC
Q psy15206        193 H--PILYWA-KDG  202 (232)
Q Consensus       193 ~--~~~~W~-~~g  202 (232)
                      .  +.+.|. +|+
T Consensus       323 ~~~~~VtW~~rdg  335 (401)
T 3f8u_B          323 SGGLEVEWELRGG  335 (401)
T ss_dssp             STTCEEEEEEESS
T ss_pred             CCCcEEEEEecCC
Confidence            4  589995 765

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.46  E-value=2.8e-13  Score=98.50  Aligned_cols=137  Identities=19%  Similarity=0.244  Sum_probs=86.6

Q ss_pred             CCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcE---------------------------------------
Q psy15206         12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK---------------------------------------   52 (232)
Q Consensus        12 ~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~---------------------------------------   52 (232)
                      .+.++.. +.++.+.+|++++|.|.+.+ +.+.+.|+|...                                       
T Consensus        27 ~~~v~~~-p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~  104 (270)
T 3qib_D           27 GMKVIQT-PRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLE  104 (270)
T ss_dssp             -CCCEEE-CSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEE
T ss_pred             ceeEEeC-CCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEE
Confidence            3445544 67788999999999999876 678999998110                                       


Q ss_pred             -------eeeeEEEEeee----------ecCceeecC------CcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEE
Q psy15206         53 -------RLGRLHLAIPY----------TSPEAQVDT------PPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TIS  107 (232)
Q Consensus        53 -------~~~~~~~~~~~----------~~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~  107 (232)
                             +.|.|.|....          ....|.|..      +|.+....+....+..|+.+.|.|.+.+ .|.+ .+.
T Consensus       105 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~  184 (270)
T 3qib_D          105 IQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS  184 (270)
T ss_dssp             ESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             ECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEE
Confidence                   11345554431          122344443      3333221222223345899999999988 5656 799


Q ss_pred             EEeCCeeeCCCCc---------------EEeeCCeEEECCCCCCC-CeEEEEEeEeCCC
Q psy15206        108 WRRENNAILPNGQ---------------TIFTGSTLQIPRITKED-RGAYYCVAQNGIG  150 (232)
Q Consensus       108 W~~~~~~~~~~~~---------------~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~~  150 (232)
                      |+++|..+.....               .....+.|.|.....+| .|.|+|.+.+...
T Consensus       185 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l  243 (270)
T 3qib_D          185 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  243 (270)
T ss_dssp             EEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCB
T ss_pred             EEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCC
Confidence            9999988753211               11112356777777777 8999999998643

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2.2e-13  Score=85.92  Aligned_cols=101  Identities=18%  Similarity=0.270  Sum_probs=75.9

Q ss_pred             cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-----CCeEEECCCCCCCCe
Q psy15206         65 SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRG  139 (232)
Q Consensus        65 ~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g  139 (232)
                      ...|.|..+|..+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....+....     ...|.|.++..+|.|
T Consensus         4 ~a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   83 (115)
T 2cr6_A            4 GSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSG   83 (115)
T ss_dssp             CCCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCE
T ss_pred             cEEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCE
Confidence            345777766644444667788999999999999999998999999999887655433222     247999999999999


Q ss_pred             EEEEEeEeCCCCceeeEEEEEEEeccEEEec
Q psy15206        140 AYYCVAQNGIGRGARRKIEVKVEFAPIVTVQ  170 (232)
Q Consensus       140 ~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~  170 (232)
                      .|+|.+    +. ......|.|..+|.+...
T Consensus        84 ~Y~C~~----g~-~~~~~~L~V~~~p~~~~~  109 (115)
T 2cr6_A           84 TIYFEA----GD-QRASAALRVTEKPSVFSR  109 (115)
T ss_dssp             EEEEEE----TT-EECCEEEEEECCSSCCSS
T ss_pred             EEEEEE----CC-eeEEEEEEEECCCceecc
Confidence            999993    23 445577888877765443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.45  E-value=2.6e-12  Score=89.08  Aligned_cols=126  Identities=15%  Similarity=0.256  Sum_probs=81.6

Q ss_pred             cceEeecCCeEEEEEEecC----CCCCeEEEEeCcEee--------------------------------------eeEE
Q psy15206         21 QLSVAKEGQSVQLECHAEG----HPIPTISWRRNFKRL--------------------------------------GRLH   58 (232)
Q Consensus        21 ~~~~~~~G~~v~l~C~~~~----~p~~~~~W~~~~~~~--------------------------------------~~~~   58 (232)
                      .++.+.+|++++|.|.+.+    .+.+.+.|++++...                                      |.|.
T Consensus         2 ~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~   81 (201)
T 1dr9_A            2 IHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYE   81 (201)
T ss_dssp             CEEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEE
T ss_pred             ceEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEE
Confidence            3577999999999999963    466789999964332                                      3555


Q ss_pred             EEeeee-----------cCceeecCC---cEEecCCCCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcEEe
Q psy15206         59 LAIPYT-----------SPEAQVDTP---PVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIF  123 (232)
Q Consensus        59 ~~~~~~-----------~~~l~v~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~  123 (232)
                      |.....           .+.|.|..+   |....     .....|+.+.|.|.+. +.|.|.+.|+++|..+........
T Consensus        82 C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~-----~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~  156 (201)
T 1dr9_A           82 CVVLKYEKDAFKREHLAEVTLSVKADFPTPSISD-----FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVS  156 (201)
T ss_dssp             EEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEE-----EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEE
T ss_pred             EEEEcCCCCccccccccEEEEEEcCCCCCCceEe-----ccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEE
Confidence            554321           233444332   11111     1123478899999995 889999999999987754322211


Q ss_pred             e--C-CeE---EECCCCCCCCeEEEEEeEeCCCC
Q psy15206        124 T--G-STL---QIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       124 ~--~-~~l---~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .  . +.+   .+..+...|.|.|+|.+.|..+.
T Consensus       157 ~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~  190 (201)
T 1dr9_A          157 QDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLR  190 (201)
T ss_dssp             ECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCC
T ss_pred             ecCCCcEEEEEEEEEEEecCCCEEEEEEecCcce
Confidence            1  1 211   22345668999999999998776

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.45  E-value=2.1e-12  Score=91.20  Aligned_cols=66  Identities=23%  Similarity=0.393  Sum_probs=47.9

Q ss_pred             eecCCcEEEEeeeccC-CCC-eEEEEe-CCeeeCCC--------CcEEeeCCeEEECCCCC--CCCeEEEEEeEeCCCC
Q psy15206         86 AKEGQSVQLECHAEGH-PIP-TISWRR-ENNAILPN--------GQTIFTGSTLQIPRITK--EDRGAYYCVAQNGIGR  151 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~-~~~-~~~W~~-~~~~~~~~--------~~~~~~~~~l~i~~~~~--~~~g~y~C~~~~~~~~  151 (232)
                      +..|+.+.|.|.+.+. |.+ .+.|++ +|..+...        .......+.|.|.....  +|.|.|+|.+.|..+.
T Consensus       138 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~  216 (223)
T 1dee_B          138 SNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGN  216 (223)
T ss_dssp             CCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCC
T ss_pred             cCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCC
Confidence            3578999999999885 666 899999 77765320        01111234577877766  7889999999998765

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.45  E-value=1.8e-13  Score=95.61  Aligned_cols=137  Identities=9%  Similarity=0.158  Sum_probs=80.7

Q ss_pred             CCeeecCCCcceEe--ecCCeEEEEEEecCCC----CCeEEEEeCcEe--------------------------------
Q psy15206         12 PPVILNNSTQLSVA--KEGQSVQLECHAEGHP----IPTISWRRNFKR--------------------------------   53 (232)
Q Consensus        12 ~P~i~~~~~~~~~~--~~G~~v~l~C~~~~~p----~~~~~W~~~~~~--------------------------------   53 (232)
                      +|.+... ++...+  .+|++++|.|.+.+.+    ...+.|+|++..                                
T Consensus         1 ~P~v~~~-pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d   79 (207)
T 1l6x_A            1 GPSVFLF-PPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLN   79 (207)
T ss_dssp             CCEEEEE-CCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHT
T ss_pred             CCeEEEe-CcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccC
Confidence            3666666 333333  7999999999999854    359999996532                                


Q ss_pred             eeeEEEEeeeecC------ce----eecCCcEEecCCCCceEeecCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc-
Q psy15206         54 LGRLHLAIPYTSP------EA----QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ-  120 (232)
Q Consensus        54 ~~~~~~~~~~~~~------~l----~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~-  120 (232)
                      .|.|.|.......      .+    .+..+|.+....+....+ .+..+.|.|.+.|. |. +.+.|+++|..+..... 
T Consensus        80 ~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~  158 (207)
T 1l6x_A           80 GKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTT  158 (207)
T ss_dssp             TCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEEC
T ss_pred             CceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEECCeeccCcccc
Confidence            1344444422211      11    223344433222222122 45569999999984 54 38999999987642111 


Q ss_pred             --EEeeCC------eEEECCCCCCCCeEEEEEeEeCCC
Q psy15206        121 --TIFTGS------TLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       121 --~~~~~~------~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                        ....++      .|.+......|.|.|+|.+.|...
T Consensus       159 ~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          159 PPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence              111222      244444444678999999998653

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.45  E-value=1.6e-12  Score=88.91  Aligned_cols=147  Identities=13%  Similarity=0.175  Sum_probs=95.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      .+....+..|+++.|.|......+..+.|...-......  .......+.+.++. +|.+.|.|.+.... ....+.+.+
T Consensus         8 ~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~--~g~~~~~~~ls~vs-~d~~~~~C~~~c~~-~~~~~~v~l   83 (196)
T 3bn3_B            8 QPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQ--RGLRWLARQLVDIR-EPETQPVCFFRCAR-RTLQARGLI   83 (196)
T ss_dssp             ESSEEEEETTEEEEEEEEECCSSCSEEEEECSSEEEEEE--EETTEEEEEEEEEC-SSEECCEEEEEETT-EEEEEECEE
T ss_pred             cCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCCeeEc--cccCceEEEEEEEc-cCCCceEEEEECCC-CceEEEEEE
Confidence            345567889999999999864333367885432111000  00011237888888 77777999987643 336678888


Q ss_pred             EEEeccE-EEeccceeeeeccCeEEEEEEeecC-CCCe--EEEeeCCEEecCCC------e-----EEEEEeccccCCce
Q psy15206        160 KVEFAPI-VTVQSTRIGQALHHDMDLDCHIEAY-PHPI--LYWAKDGEIVVNDE------Y-----HSISNFGTSEGTTG  224 (232)
Q Consensus       160 ~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~--~~W~~~g~~~~~~~------~-----~~~~~~~~~~~d~g  224 (232)
                      .|+.+|. +.+.+....+..|+.++|.|.+.+. |...  +.|+|++..+....      .     ..+.... +.+|.|
T Consensus        84 ~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~-~r~D~g  162 (196)
T 3bn3_B           84 RTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLA-RREDHG  162 (196)
T ss_dssp             EEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEEC-CGGGTT
T ss_pred             EEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEee-eeccCC
Confidence            8887664 4455544457899999999999775 4444  89999998764211      1     2333333 335555


Q ss_pred             -EEEEecC
Q psy15206        225 -SLQCKVP  231 (232)
Q Consensus       225 -~Y~C~~~  231 (232)
                       .|+|+|.
T Consensus       163 ~~~sC~A~  170 (196)
T 3bn3_B          163 ANFSCRAE  170 (196)
T ss_dssp             CEEEEEEE
T ss_pred             CeEEEEEE
Confidence             9999985

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.45  E-value=1.4e-12  Score=91.95  Aligned_cols=132  Identities=18%  Similarity=0.249  Sum_probs=83.8

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCcE----e------------------ee--------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNFK----R------------------LG--------------------   55 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~~----~------------------~~--------------------   55 (232)
                      +.++.+.+|++++|.|.+.+.+  .+.+.|+|+..    .                  .+                    
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            5678899999999999998755  67899998310    0                  01                    


Q ss_pred             ------eEEEEeeee---------cCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CC--CeEEEEeCCe
Q psy15206         56 ------RLHLAIPYT---------SPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PI--PTISWRRENN  113 (232)
Q Consensus        56 ------~~~~~~~~~---------~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~--~~~~W~~~~~  113 (232)
                            .|.|.....         ...|.|..    +|.+....  ...+..|+.+.|.|.+.+. |.  +.+.|++++.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~--~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~  164 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT--LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGK  164 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC--CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCS
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee--cccccCCCcEEEEEEEEeEECCCcEEEEEecCCE
Confidence                  233322110         22444442    22222211  1224578999999999885 65  6899999886


Q ss_pred             eeCC--CC------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206        114 AILP--NG------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA  153 (232)
Q Consensus       114 ~~~~--~~------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~  153 (232)
                      .+..  ..      ......+.|.|......|.|.|+|.+.|..+...
T Consensus       165 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          165 DITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             SCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             ecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            5310  00      1111123588888888999999999999877633

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=9.4e-13  Score=82.35  Aligned_cols=91  Identities=24%  Similarity=0.386  Sum_probs=70.0

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC-CCcEEee---CC--eEEECCCCCCCCeEEEEEeE
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP-NGQTIFT---GS--TLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-~~~~~~~---~~--~l~i~~~~~~~~g~y~C~~~  146 (232)
                      +|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..++...   ++  .|.|.++..+|.|.|+|.+.
T Consensus         8 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm2_A            8 APFFEM-KLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA   86 (110)
T ss_dssp             CCCBSS-CCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEE
T ss_pred             CCEEEe-cCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEE
Confidence            444433 45667888999999999999999999999999988754 2333322   22  69999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEecc
Q psy15206        147 NGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p  165 (232)
                      |..|. ....+.|.|..+|
T Consensus        87 N~~g~-~~~~~~l~V~~~~  104 (110)
T 2dm2_A           87 NPQGR-ISCTGRLMVQAVN  104 (110)
T ss_dssp             CTTCC-EEECCCEEEECCS
T ss_pred             ECCCe-EEEEEEEEEECCC
Confidence            98887 4566677776544

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.45  E-value=1.5e-12  Score=79.15  Aligned_cols=83  Identities=30%  Similarity=0.514  Sum_probs=67.4

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      .+....+.+|+.+.|.|.+.+  .+.+.|++++..+....+....++.|.|.++..+|+|.|.|.+.|..|. ....+.+
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~-~~~~~~l   83 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDS-ETWIFMV   83 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCE-EEEEEEE
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCc-EEEEEEE
Confidence            345567789999999999976  5789999999988777677777889999999999999999999998775 5566666


Q ss_pred             EEEecc
Q psy15206        160 KVEFAP  165 (232)
Q Consensus       160 ~v~~~p  165 (232)
                      .|..++
T Consensus        84 ~V~~~~   89 (95)
T 4hwu_A           84 NVTDAA   89 (95)
T ss_dssp             EECCC-
T ss_pred             EEeCCc
Confidence            665543

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.45  E-value=4.4e-13  Score=82.15  Aligned_cols=69  Identities=16%  Similarity=0.296  Sum_probs=58.3

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeE---------EEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH---------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~---------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+|+|..+....++         .|.+.++...|+|.|.|.|.
T Consensus         5 ~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~   82 (99)
T 3puc_A            5 SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVK   82 (99)
T ss_dssp             EEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEE
Confidence            4567777777888999999999999999999999999999888655444         56777788899999999873

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=6.2e-13  Score=81.53  Aligned_cols=80  Identities=23%  Similarity=0.424  Sum_probs=64.7

Q ss_pred             CceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      ....+.+|+.+.|.|.+.+.| +.+.|++++..+....+.......|.|.++...|.|.|.|.+.|..+. ....+.+.|
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V   88 (99)
T 2cr3_A           11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGS-DTTYFSVNV   88 (99)
T ss_dssp             EECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEE-EEEEEEECB
T ss_pred             cCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCce-EEEEEEEEE
Confidence            344567899999999998876 699999999887666666666789999999999999999999998776 445555555


Q ss_pred             Ee
Q psy15206        162 EF  163 (232)
Q Consensus       162 ~~  163 (232)
                      ..
T Consensus        89 ~~   90 (99)
T 2cr3_A           89 SD   90 (99)
T ss_dssp             CS
T ss_pred             ec
Confidence            44

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.44  E-value=2.3e-13  Score=95.20  Aligned_cols=130  Identities=23%  Similarity=0.323  Sum_probs=83.5

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCcE--e-------------------e----------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNFK--R-------------------L----------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~~--~-------------------~----------------------   54 (232)
                      +.++.+.+|++++|.|.+.+.+  .+.+.|+|+..  .                   .                      
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~   86 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT   86 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence            5677899999999999999865  47899998420  0                   1                      


Q ss_pred             ----eeEEEEeee-----ecCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEEEEeCCeeeCC--
Q psy15206         55 ----GRLHLAIPY-----TSPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWRRENNAILP--  117 (232)
Q Consensus        55 ----~~~~~~~~~-----~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~--  117 (232)
                          |.|.|....     ....|.|..    +|.+....+ ...+..|+.+.|.|.+.+. |.+ .+.|++++..+..  
T Consensus        87 ~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~  165 (210)
T 3d9a_H           87 TEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHT  165 (210)
T ss_dssp             GGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEECC-TTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE
T ss_pred             cccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEecC-CcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEE
Confidence                233333211     023444442    233322121 1234578999999999886 777 8999998865311  


Q ss_pred             CC-----cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        118 NG-----QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       118 ~~-----~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ..     ......+.|.|..+..++ |.|+|.+.|..+.
T Consensus       166 ~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  203 (210)
T 3d9a_H          166 FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS  203 (210)
T ss_dssp             CCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGT
T ss_pred             cCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence            00     111123468888888877 9999999998765

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.44  E-value=5.6e-13  Score=80.61  Aligned_cols=67  Identities=12%  Similarity=0.143  Sum_probs=55.0

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+.+..+..|+.+.|.|.+.+ +.+.+.|+|||..+..+.+         ..|.+.++..+|+|.|+|.|.
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~   80 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA   80 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEET
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEEC
Confidence            456677778889999999999999976 4578999999998865443         457777888899999999874

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.44  E-value=5.1e-13  Score=82.51  Aligned_cols=69  Identities=10%  Similarity=0.214  Sum_probs=58.5

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+....+         ..|.+.++...|+|.|.|.|.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   84 (103)
T 3qp3_A            7 HAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT   84 (103)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence            467777778888899999999999999999999999999988765543         456777788899999999873

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.43  E-value=3.7e-12  Score=77.68  Aligned_cols=82  Identities=23%  Similarity=0.337  Sum_probs=65.5

Q ss_pred             CCCceEeecCCcEEEEeeeccC-CCCeEEEEeCCeeeCCCCcEEe--eCC--eEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH-PIPTISWRRENNAILPNGQTIF--TGS--TLQIPRITKEDRGAYYCVAQNGIGRGAR  154 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~~~g~y~C~~~~~~~~~~~  154 (232)
                      .+....+.+|+.+.|.|.+.+. |.+.+.|++++..+....+...  .++  .|.|.++...|.|.|.|.+.|..|. ..
T Consensus         7 ~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-~~   85 (97)
T 2bk8_A            7 QIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE-DS   85 (97)
T ss_dssp             CCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE-EE
T ss_pred             cCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe-Ee
Confidence            4566788899999999999996 8889999999988766555433  333  8999999999999999999998876 44


Q ss_pred             eEEEEEEE
Q psy15206        155 RKIEVKVE  162 (232)
Q Consensus       155 ~~~~l~v~  162 (232)
                      ..+.+.|.
T Consensus        86 ~~~~l~V~   93 (97)
T 2bk8_A           86 SYAELFVK   93 (97)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEE
Confidence            45555553

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.43  E-value=7.7e-13  Score=81.06  Aligned_cols=69  Identities=17%  Similarity=0.363  Sum_probs=57.6

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC----------eEEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE----------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|+|..+....          ...|.+.++...|+|.|+|.|.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAV   82 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEE
Confidence            46777777778888999999999999999999999999998875432          2357778888999999999874

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.43  E-value=1.5e-12  Score=80.38  Aligned_cols=77  Identities=18%  Similarity=0.308  Sum_probs=62.0

Q ss_pred             cCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-----e----CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         88 EGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----T----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-----~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      .++.+.|.|.+.|.|.|.+.|+++|..+........     .    .+.|.|.++..+|.|.|+|.+.|..|. ....+.
T Consensus        15 ~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~   93 (103)
T 1wwb_X           15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQIS   93 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEE
T ss_pred             ECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCc-EeEEEE
Confidence            577899999999999999999999998866543211     1    234999999999999999999999887 556777


Q ss_pred             EEEEecc
Q psy15206        159 VKVEFAP  165 (232)
Q Consensus       159 l~v~~~p  165 (232)
                      |.|..+|
T Consensus        94 l~V~~~P  100 (103)
T 1wwb_X           94 AHFMGWP  100 (103)
T ss_dssp             ECCSCCC
T ss_pred             EEECCCC
Confidence            7776555

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.43  E-value=2.7e-13  Score=83.31  Aligned_cols=69  Identities=17%  Similarity=0.270  Sum_probs=57.6

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC----------eEEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE----------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|+|..+....          ...|.+.++...|+|.|+|.|.
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK   82 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence            45666667777888999999999999999999999999998876432          2477788888999999999874

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.43  E-value=1.9e-12  Score=78.05  Aligned_cols=78  Identities=23%  Similarity=0.520  Sum_probs=63.4

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....     .+.|.|.++..+|.|.|.|.+.|..|...+..+.+
T Consensus         9 ~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l   83 (91)
T 3bfo_A            9 EPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEI   83 (91)
T ss_dssp             CCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC-----SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEE
T ss_pred             CCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC-----CCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEE
Confidence            4556678899999999999999999999999998765432     35799999999999999999999887644455555


Q ss_pred             EEE
Q psy15206        160 KVE  162 (232)
Q Consensus       160 ~v~  162 (232)
                      .|.
T Consensus        84 ~V~   86 (91)
T 3bfo_A           84 IID   86 (91)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            553

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.43  E-value=4.1e-13  Score=95.38  Aligned_cols=142  Identities=18%  Similarity=0.246  Sum_probs=86.4

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecC-CCC--CeEEEEeCcEee-------------------------------
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEG-HPI--PTISWRRNFKRL-------------------------------   54 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~-~p~--~~~~W~~~~~~~-------------------------------   54 (232)
                      ...+|.+.+.+|....+.+|++++|.|.+.+ .|.  ..+.|++++...                               
T Consensus         9 ~~~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D   88 (231)
T 2w59_A            9 SCSPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLS   88 (231)
T ss_dssp             ---CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHT
T ss_pred             CCCCCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccC
Confidence            3457777655466777889999999999998 463  499999865332                               


Q ss_pred             -eeEEEEeeee----cCceeec------CCcEEecCCCCceEeecCCcEEEEeeeccC-C-CCeEEEEeCCeeeCCCCc-
Q psy15206         55 -GRLHLAIPYT----SPEAQVD------TPPVILNNSPQLSVAKEGQSVQLECHAEGH-P-IPTISWRRENNAILPNGQ-  120 (232)
Q Consensus        55 -~~~~~~~~~~----~~~l~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~~~W~~~~~~~~~~~~-  120 (232)
                       |.|.|.....    .+.+.+.      .+|.+....+....+ .+..+.|.|.+.|. | .+.+.|+++|..+..... 
T Consensus        89 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~  167 (231)
T 2w59_A           89 GERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFV  167 (231)
T ss_dssp             TCCEEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCE
T ss_pred             CCEEEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccc
Confidence             2344433221    1222222      233332212221112 24579999999985 4 368999999987643211 


Q ss_pred             ----EE---------------eeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        121 ----TI---------------FTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       121 ----~~---------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                          ..               ...+.|.|......|.|.|+|.+.|....
T Consensus       168 ~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          168 TTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             ECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             cCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence                01               11135677777777899999999997543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.42  E-value=7.7e-13  Score=83.86  Aligned_cols=94  Identities=20%  Similarity=0.304  Sum_probs=68.3

Q ss_pred             ceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--------eCCeEEECCCCCCCC
Q psy15206         67 EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--------TGSTLQIPRITKEDR  138 (232)
Q Consensus        67 ~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~~~  138 (232)
                      .|.|..+|.+.....  ..  ..+...|.|.+.|.|.+.+.|+++|..+........        ..+.|.|.++...|.
T Consensus         2 ~L~V~~pP~i~~~~~--~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   77 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEE--PE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNN   77 (118)
T ss_dssp             --CCCCCCCCCCCCC--CC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGC
T ss_pred             EEEEecCCceeccCC--Ce--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcC
Confidence            567777777544211  11  235678899999999999999999988766543322        245799999999999


Q ss_pred             eEEEEEeEeCCCCceeeEEEEEEEecc
Q psy15206        139 GAYYCVAQNGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       139 g~y~C~~~~~~~~~~~~~~~l~v~~~p  165 (232)
                      |.|.|.+.|..|. ....+.+.|...|
T Consensus        78 G~Y~C~a~N~~G~-~~~~~~l~v~~~P  103 (118)
T 1wwc_A           78 GNYTLIAKNPLGT-ANQTINGHFLKEP  103 (118)
T ss_dssp             EEEEEEEEETTEE-EEEEEEECCSCCC
T ss_pred             EEEEEEEECCCCe-EeeEEEEEEccCC
Confidence            9999999999887 5556666665554

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.42  E-value=4.3e-13  Score=95.28  Aligned_cols=131  Identities=15%  Similarity=0.195  Sum_probs=82.9

Q ss_pred             CcceEeecCCeEEEEEEecCCC-CC-eEEEEeCcE--e---------------------------------------eee
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP-IP-TISWRRNFK--R---------------------------------------LGR   56 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p-~~-~~~W~~~~~--~---------------------------------------~~~   56 (232)
                      |.++.+.+|++++|.|.+.+.+ .+ .+.|+|+..  .                                       .|.
T Consensus        26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  105 (234)
T 2j6e_L           26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEAD  105 (234)
T ss_dssp             CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSE
T ss_pred             CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEE
Confidence            5678899999999999998744 33 799998421  0                                       024


Q ss_pred             EEEEeeee---------cCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCcE
Q psy15206         57 LHLAIPYT---------SPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGHPI--PTISWRRENNAILPNGQT  121 (232)
Q Consensus        57 ~~~~~~~~---------~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~  121 (232)
                      |.|.....         ...|.|..    +|.+.. .+.......|+.+.|.|.+.+.++  +.+.|+++|..+......
T Consensus       106 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~-~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~  184 (234)
T 2j6e_L          106 YYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTL-FPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVET  184 (234)
T ss_dssp             EEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCE-ECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEE
T ss_pred             EEEEEEcCCcceeEecCCEEEEEecCCCCCCcccc-cCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccc
Confidence            44443211         23444421    222211 111112235889999999988543  379999999876432110


Q ss_pred             ----------EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        122 ----------IFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       122 ----------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                                ....+.|.|..+..+|.|.|+|.+.|....
T Consensus       185 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  224 (234)
T 2j6e_L          185 TKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST  224 (234)
T ss_dssp             CCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBC
T ss_pred             cCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCc
Confidence                      011236888999999999999999997544

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.42  E-value=5.3e-13  Score=82.90  Aligned_cols=87  Identities=26%  Similarity=0.590  Sum_probs=69.3

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      +|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+....    ...|.|.++...|.|.|+|.+.|.
T Consensus        14 ~~~i~~-~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   92 (106)
T 1nct_A           14 AARILT-KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENS   92 (106)
T ss_dssp             CCEEEE-CCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCS
T ss_pred             CCEEEE-CCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeC
Confidence            444444 566788889999999999999999999999999887655554332    358999999999999999999998


Q ss_pred             CCCceeeEEEEEE
Q psy15206        149 IGRGARRKIEVKV  161 (232)
Q Consensus       149 ~~~~~~~~~~l~v  161 (232)
                      .|. ....+.|.|
T Consensus        93 ~G~-~~~~~~l~V  104 (106)
T 1nct_A           93 EGK-QEAEFTLTI  104 (106)
T ss_dssp             SCB-CCEEEEEEE
T ss_pred             CCe-EEEEEEEEE
Confidence            877 445566655

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.42  E-value=4.2e-12  Score=77.73  Aligned_cols=88  Identities=27%  Similarity=0.475  Sum_probs=67.0

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE-Eee-CC---eEEECCCCCCCCeEEEEEeEe
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT-IFT-GS---TLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~-~~---~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      +|.+.. .+....+..|+.+.|.|.+.+.|.+.+.|++++..+...... ... .+   .|.|.++..+|.|.|+|.+.|
T Consensus         5 ~P~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            5 PPTFKV-SLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEE-CCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEE-cCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            444443 456678889999999999999999999999999887554332 221 22   699999999999999999999


Q ss_pred             CCCCceeeEEEEEEE
Q psy15206        148 GIGRGARRKIEVKVE  162 (232)
Q Consensus       148 ~~~~~~~~~~~l~v~  162 (232)
                      ..|. ....+.|.|.
T Consensus        84 ~~g~-~~~~~~l~V~   97 (99)
T 1u2h_A           84 EYGA-RQCEARLEVR   97 (99)
T ss_dssp             TTEE-EEEEEEEEEE
T ss_pred             CCCc-eeEEEEEEEE
Confidence            8876 4455566554

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=6.1e-13  Score=83.19  Aligned_cols=92  Identities=26%  Similarity=0.534  Sum_probs=72.1

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--e---CCeEEECCCCCCCCeEEEEEeE
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--T---GSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~---~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      .+|.+.. .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+........  .   ...|.|.++..+|.|.|+|.+.
T Consensus         8 ~~P~i~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            8 FRPHFLQ-APGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCEEEE-CCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCcEEe-CCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            3555554 56677888999999999999999999999999987765443322  1   2379999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEecc
Q psy15206        147 NGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p  165 (232)
                      |..|. ....+.|.|..+|
T Consensus        87 n~~g~-~~~~~~l~V~~~p  104 (110)
T 2dm3_A           87 NRAGQ-NSFSLELVVAAKE  104 (110)
T ss_dssp             CSSCE-EEECCEEEEECCC
T ss_pred             CCCCE-EEEEEEEEEeCCC
Confidence            98876 5667777776654

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.41  E-value=2.9e-12  Score=93.54  Aligned_cols=145  Identities=12%  Similarity=0.200  Sum_probs=92.4

Q ss_pred             CCceEeecCCcEEEEeeeccCCCC-eEEEEeCCe-eeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIP-TISWRRENN-AILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      +....+.+|+++.|.|.... +.+ .+.|...-. ........  ....+.+.++..+  +.|.|.+... +....+.+.
T Consensus         6 P~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~g~--~~~~~~l~~v~~~--~~y~C~~~~~-~~~~~~~v~   79 (291)
T 1mq8_A            6 PSKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGN--NRKVYELSNVQED--SQPMCYSNCP-DGQSTAKTF   79 (291)
T ss_dssp             CSEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCSCS--SEEEEEEESCCSC--CCCEEEEECS-SCEEEEECE
T ss_pred             CCccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccccCCC--ceEEEEEEecccC--CeEEEEEEcC-CccEEEEEE
Confidence            45567889999999999964 444 488864211 11101100  1114677787743  4699999754 334667778


Q ss_pred             EEEEeccE-EEeccceeeeeccCeEEEEEEeecCCC-C--eEEEeeCCEEecCCC------eEEEEEeccccCCceEEEE
Q psy15206        159 VKVEFAPI-VTVQSTRIGQALHHDMDLDCHIEAYPH-P--ILYWAKDGEIVVNDE------YHSISNFGTSEGTTGSLQC  228 (232)
Q Consensus       159 l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~-~--~~~W~~~g~~~~~~~------~~~~~~~~~~~~d~g~Y~C  228 (232)
                      +.|..+|. +.+.+....+..|+.++|.|.+.|.++ .  .|.|+|++..+....      ...+........|.+.|.|
T Consensus        80 l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C  159 (291)
T 1mq8_A           80 LTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSC  159 (291)
T ss_dssp             EEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSCSSCEEEE
T ss_pred             EEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeeccCCceEEE
Confidence            88887765 333344345788999999999877544 3  499999997765221      2234444444455569999


Q ss_pred             ecC
Q psy15206        229 KVP  231 (232)
Q Consensus       229 ~~~  231 (232)
                      +|.
T Consensus       160 ~A~  162 (291)
T 1mq8_A          160 RTE  162 (291)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.41  E-value=6.4e-12  Score=89.24  Aligned_cols=65  Identities=25%  Similarity=0.388  Sum_probs=45.3

Q ss_pred             ecC-CcEEEEeeeccC-CCC-eEEEEe-CCeeeCCC--------CcEEeeCCeEEECCCCC--CCCeEEEEEeEeCCCC
Q psy15206         87 KEG-QSVQLECHAEGH-PIP-TISWRR-ENNAILPN--------GQTIFTGSTLQIPRITK--EDRGAYYCVAQNGIGR  151 (232)
Q Consensus        87 ~~g-~~~~l~C~~~~~-~~~-~~~W~~-~~~~~~~~--------~~~~~~~~~l~i~~~~~--~~~g~y~C~~~~~~~~  151 (232)
                      ..| +.+.|.|.+.+. |.+ .+.|++ +|..+...        .......+.|.|.....  +|.|.|+|.+.|..+.
T Consensus       138 ~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~  216 (232)
T 1dn0_B          138 PSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN  216 (232)
T ss_dssp             ---CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             CCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCC
Confidence            367 899999999885 766 899999 88765320        01111234688888876  7899999999998765

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.41  E-value=1.3e-12  Score=83.31  Aligned_cols=91  Identities=24%  Similarity=0.301  Sum_probs=65.5

Q ss_pred             CCceEeecCCcEEEEeeeccC--CCCeEEEEeCCeeeC-----CC-CcE------EeeCCeEEECCCCCCCCeEEEEEeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGH--PIPTISWRRENNAIL-----PN-GQT------IFTGSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~~~~~-----~~-~~~------~~~~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      +....+.+|+.+.|.|.+.|.  +.+.+.|++++..+.     .. ...      ....+.|.|.++..+|+|.|+|.+.
T Consensus        15 ~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   94 (122)
T 3s35_X           15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS   94 (122)
T ss_dssp             CSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEc
Confidence            334577789999999999884  446799999887432     11 111      1234579999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEeccEEEeccc
Q psy15206        147 NGIGRGARRKIEVKVEFAPIVTVQST  172 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p~~~~~~~  172 (232)
                      |..|. ....+.|.|..+|.+.+.+.
T Consensus        95 n~~g~-~~~~~~l~V~~~p~i~~~p~  119 (122)
T 3s35_X           95 SGLMT-KKNSTFVRVHEKPFVAFGSG  119 (122)
T ss_dssp             CSSCE-EEEEEEEEEEEEECC-----
T ss_pred             cCCCc-eEEEEEEEEeccCeEEeecC
Confidence            98887 55788888988888766554

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.41  E-value=1.1e-11  Score=87.28  Aligned_cols=64  Identities=16%  Similarity=0.324  Sum_probs=48.1

Q ss_pred             ecCCcEEEEeeecc-CCC--CeEEEEeCCeeeC----------CCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         87 KEGQSVQLECHAEG-HPI--PTISWRRENNAIL----------PNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        87 ~~g~~~~l~C~~~~-~~~--~~~~W~~~~~~~~----------~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ..|+.+.|.|.+.+ .|.  +.+.|++++..+.          ....+ ...+.|.|.....+|.|.|+|.+.+..+.
T Consensus       136 ~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          136 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLY-TTSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCE-EEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcE-EEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            47899999999988 665  3799999886541          11112 22346889999999999999999997654

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=3.4e-13  Score=82.71  Aligned_cols=71  Identities=17%  Similarity=0.308  Sum_probs=60.0

Q ss_pred             EEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC------CeEEEEEeccccCCceEEEEecC
Q psy15206        161 VEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       161 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|+|..+...      ....|.+.++...|+|.|+|.|.
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   84 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAE   84 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEE
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEE
Confidence            446778877788888999999999999999999999999998776533      34578888999999999999874

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.41  E-value=2.6e-12  Score=75.96  Aligned_cols=75  Identities=23%  Similarity=0.440  Sum_probs=57.9

Q ss_pred             CceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      ..+.+.+|+.+.|.|.+.+ |.+.+.|+++|..+....+....    ...|.|.++..+|.|.|.|.+.+.     ...+
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-----~~~a   77 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD-----SRIF   77 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT-----CEEE
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE-----EEEE
Confidence            3467788999999999866 88889999999998766554432    236999999999999999998542     3445


Q ss_pred             EEEEE
Q psy15206        158 EVKVE  162 (232)
Q Consensus       158 ~l~v~  162 (232)
                      .|.|.
T Consensus        78 ~l~V~   82 (84)
T 2lu7_A           78 LVSVE   82 (84)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            55554

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.41  E-value=7e-12  Score=76.58  Aligned_cols=86  Identities=22%  Similarity=0.416  Sum_probs=65.6

Q ss_pred             cEEecCCCCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         74 PVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        74 p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      +.+....+....+.+|+.+.|.|.+. +.|.+.+.|++++...... .....++.|.|.++..+|.|.|.|.+.|..|. 
T Consensus        10 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~-   87 (98)
T 1gl4_B           10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAM-   87 (98)
T ss_dssp             EEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT-TEEEETTEEEECSCCGGGCEEEEEEEECSSCE-
T ss_pred             cEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCc-eeecCCCEEEEeCCChhhCEEEEEEecCCCCc-
Confidence            33444455667888999999999998 6888899999976544332 34455678999999999999999999998776 


Q ss_pred             eeeEEEEEE
Q psy15206        153 ARRKIEVKV  161 (232)
Q Consensus       153 ~~~~~~l~v  161 (232)
                      ....+.+.|
T Consensus        88 ~~~~~~l~V   96 (98)
T 1gl4_B           88 DQGTATLHV   96 (98)
T ss_dssp             EEEEEEEEE
T ss_pred             cccEEEEEE
Confidence            445555554

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.40  E-value=1.7e-12  Score=93.41  Aligned_cols=130  Identities=20%  Similarity=0.268  Sum_probs=81.4

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEeCcE--------------------------------------------eee
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK--------------------------------------------RLG   55 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~--------------------------------------------~~~   55 (232)
                      +..+.+.+|++++|.|.+.+.+...+.|+|...                                            +.|
T Consensus         8 p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG   87 (253)
T 3to4_D            8 PRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGR   87 (253)
T ss_dssp             CSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCE
T ss_pred             CCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCe
Confidence            567889999999999999888888999998210                                            113


Q ss_pred             eEEEEeeee------------cCceeec------CCcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeCCeee
Q psy15206         56 RLHLAIPYT------------SPEAQVD------TPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRENNAI  115 (232)
Q Consensus        56 ~~~~~~~~~------------~~~l~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~  115 (232)
                      .|.|.....            ...|.|.      .+|......+....+..|+.+.|.|.+.+ .|.+ .+.|+++|..+
T Consensus        88 ~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l  167 (253)
T 3to4_D           88 TLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV  167 (253)
T ss_dssp             EEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred             EEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECCEEC
Confidence            455544211            1133332      22222211111112224688999999988 5666 79999999876


Q ss_pred             CCCC---------------cEEeeCCeEEECCCCCCC-CeEEEEEeEeCC
Q psy15206        116 LPNG---------------QTIFTGSTLQIPRITKED-RGAYYCVAQNGI  149 (232)
Q Consensus       116 ~~~~---------------~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~  149 (232)
                      ....               ......+.|.|......| .|.|+|.+.+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          168 HSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             CTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             CCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            4321               111112357777777677 679999999864

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.40  E-value=1.6e-12  Score=82.40  Aligned_cols=77  Identities=19%  Similarity=0.313  Sum_probs=62.4

Q ss_pred             cCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-----------eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206         88 EGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----------TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK  156 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  156 (232)
                      .+..+.|.|.+.|.|.|.++|+++|..+....+...           ..+.|.|.++...|+|.|+|.+.|..|. ....
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~-~~~t   92 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASAS   92 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEE-EEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCe-EEEE
Confidence            567899999999999999999999998876544211           1257999999999999999999999987 5566


Q ss_pred             EEEEEEecc
Q psy15206        157 IEVKVEFAP  165 (232)
Q Consensus       157 ~~l~v~~~p  165 (232)
                      +.+.|...|
T Consensus        93 ~~l~v~~~P  101 (126)
T 1he7_A           93 IMAAFMDNP  101 (126)
T ss_dssp             EEECCCSCT
T ss_pred             EEEEEEcCC
Confidence            677666555

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.40  E-value=7e-13  Score=80.30  Aligned_cols=68  Identities=18%  Similarity=0.264  Sum_probs=55.9

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCC--EEecCC-------CeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG--EIVVND-------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g--~~~~~~-------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|+|  ..+...       ....|.+.++...|+|.|+|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   78 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEE
Confidence            466665667778889999999999999999999999999  665432       33567778889999999999874

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.39  E-value=3e-13  Score=84.30  Aligned_cols=75  Identities=20%  Similarity=0.409  Sum_probs=53.1

Q ss_pred             EEEEEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC-------eEEEEEeccccCCceEEEEe
Q psy15206        157 IEVKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE-------YHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       157 ~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~-------~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      +.+.+..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+++|..+....       ...|.+.++...|+|.|.|.
T Consensus         3 ~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   82 (108)
T 3kvq_A            3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQ   82 (108)
T ss_dssp             --------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEE
T ss_pred             eeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEE
Confidence            34556678888877888889999999999999999999999999987765332       34577778888999999999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus        83 a~   84 (108)
T 3kvq_A           83 AC   84 (108)
T ss_dssp             EC
T ss_pred             EE
Confidence            74

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.39  E-value=9e-13  Score=77.99  Aligned_cols=59  Identities=27%  Similarity=0.531  Sum_probs=48.8

Q ss_pred             ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCceEEEEecC
Q psy15206        172 TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .++.+..|+++.|.|.+.+ |.|.+.|+|||..+..+.+         ..|.+.++...|+|.|.|.|.
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   71 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAP   71 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECT
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEEC
Confidence            4567889999999999965 8889999999998865443         457777888899999999873

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.39  E-value=1.2e-12  Score=82.35  Aligned_cols=69  Identities=10%  Similarity=0.073  Sum_probs=57.2

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|+|..+....         ...|.+.++...|+|.|+|.|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVE   83 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence            35667667778889999999999999999999999999997765443         3456777888899999999873

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.9e-13  Score=83.34  Aligned_cols=68  Identities=19%  Similarity=0.267  Sum_probs=59.5

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+....+..|+.+.|.|.+.+.|.+.+.|+|+|..+.......|.+.++...|+|.|.|.|.
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   77 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVAT   77 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEEC
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEE
Confidence            45566667777788999999999999999999999999998887777788888999999999999975

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.39  E-value=4.1e-12  Score=92.15  Aligned_cols=146  Identities=22%  Similarity=0.392  Sum_probs=87.7

Q ss_pred             ceEeecCCcEEEEeeecc--CCCCeEEEEeCC--ee---e---CC-----------CCcEEee------CCeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEG--HPIPTISWRREN--NA---I---LP-----------NGQTIFT------GSTLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~--~~---~---~~-----------~~~~~~~------~~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|...+  .....+.|++..  ..   +   ..           ..++...      ..+|.|.+++.
T Consensus        32 ~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  111 (267)
T 3u1s_H           32 AEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLTA  111 (267)
T ss_dssp             CEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCCG
T ss_pred             CEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCCh
Confidence            356778999999999865  234579998742  11   0   00           1222221      12599999999


Q ss_pred             CCCeEEEEEeEe-------CC------------C-C----ceeeEEEEEEE----eccEEEeccceeeeeccCeEEEEEE
Q psy15206        136 EDRGAYYCVAQN-------GI------------G-R----GARRKIEVKVE----FAPIVTVQSTRIGQALHHDMDLDCH  187 (232)
Q Consensus       136 ~~~g~y~C~~~~-------~~------------~-~----~~~~~~~l~v~----~~p~~~~~~~~~~~~~g~~~~l~C~  187 (232)
                      +|+|.|.|.+.+       ..            . .    .......+.|.    .+|.+...........|+.++|.|.
T Consensus       112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~  191 (267)
T 3u1s_H          112 DDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL  191 (267)
T ss_dssp             GGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEEE
T ss_pred             hhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEEE
Confidence            999999999862       00            0 0    01112344553    3555553333333457899999999


Q ss_pred             eecC-C-CCeEEEeeCCEEec-----------CCCeEE----EEEeccccCCceEEEEecC
Q psy15206        188 IEAY-P-HPILYWAKDGEIVV-----------NDEYHS----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       188 ~~~~-p-~~~~~W~~~g~~~~-----------~~~~~~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.++ | .+.+.|  +|..+.           .+..|.    +.+......| |.|+|.|.
T Consensus       192 ~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~  249 (267)
T 3u1s_H          192 VKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVN  249 (267)
T ss_dssp             EEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEE
T ss_pred             EeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEE
Confidence            9874 4 347999  443221           223333    3344455567 99999974

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.38  E-value=3.9e-12  Score=78.03  Aligned_cols=79  Identities=23%  Similarity=0.516  Sum_probs=61.8

Q ss_pred             CceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc-----EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeE
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-----TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRK  156 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~  156 (232)
                      ....+.+|+.+.|.|.+.|.|.+.+.|++++..+.....     .......|.|.++..+|.|.|+|.+.|..|. ....
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~-~~~~   94 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHT   94 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCE-EEEE
Confidence            456777899999999999999999999999987654321     1223458999999999999999999998876 4455


Q ss_pred             EEEEE
Q psy15206        157 IEVKV  161 (232)
Q Consensus       157 ~~l~v  161 (232)
                      +.+.|
T Consensus        95 ~~l~V   99 (100)
T 3caf_A           95 YHLDV   99 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55544

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.38  E-value=2.2e-12  Score=92.91  Aligned_cols=129  Identities=22%  Similarity=0.339  Sum_probs=80.9

Q ss_pred             CcceEeecCCeEEEEEEecC--CCCCeEEEEeCcE---------------------------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEG--HPIPTISWRRNFK---------------------------------------------   52 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~--~p~~~~~W~~~~~---------------------------------------------   52 (232)
                      +.++.+.+|++++|.|.+.+  .+...+.|+|+..                                             
T Consensus         7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (253)
T 3liz_H            7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL   86 (253)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence            56788999999999999976  3367899998210                                             


Q ss_pred             ---eeeeEEEEeeee----------cCceeec----CCcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeCCe
Q psy15206         53 ---RLGRLHLAIPYT----------SPEAQVD----TPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRENN  113 (232)
Q Consensus        53 ---~~~~~~~~~~~~----------~~~l~v~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~  113 (232)
                         +.|.|.|.....          ...|.|.    .+|.+... .....+..|+.+.|.|.+.+ .|.+ .+.|++++.
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  165 (253)
T 3liz_H           87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPL-APGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL  165 (253)
T ss_dssp             CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEE-CC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEe-cCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence               012444443211          1244553    23333321 12223446899999999988 6656 799999886


Q ss_pred             ee--------CCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        114 AI--------LPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       114 ~~--------~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ..        ... ......+.|.|.....+| |.|+|.+.|..+.
T Consensus       166 ~~~~~~~~~~~~~-g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~  209 (253)
T 3liz_H          166 SSGVHTFPAVLQS-DLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS  209 (253)
T ss_dssp             CTTEEECCCEEET-TEEEEEEEEEEETTSTTT-SCCEEEEEEGGGT
T ss_pred             ecceEeCCccccC-CeEEEEEEEEEcHHHCCC-ceEEEEEEECCCC
Confidence            32        111 122223578899999999 9999999997654

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.38  E-value=3.1e-12  Score=80.85  Aligned_cols=93  Identities=30%  Similarity=0.624  Sum_probs=67.7

Q ss_pred             cCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC------cEEeeCCeEEEC-----CCCCCCCe
Q psy15206         71 DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG------QTIFTGSTLQIP-----RITKEDRG  139 (232)
Q Consensus        71 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~------~~~~~~~~l~i~-----~~~~~~~g  139 (232)
                      ..+|.+.. .+....+..|+.+.|.|.+.|.|.|.+.|++++..+....      .....++.+.+.     ++..+|.|
T Consensus         7 ~~pP~i~~-~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G   85 (117)
T 2v9t_A            7 DFPPRIVE-HPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (117)
T ss_dssp             CEEEEEEE-CCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCE
T ss_pred             cCCCeeEc-CCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCE
Confidence            34555544 5667788899999999999999999999999998875432      122234444444     45789999


Q ss_pred             EEEEEeEeCCCCceeeEEEEEEEec
Q psy15206        140 AYYCVAQNGIGRGARRKIEVKVEFA  164 (232)
Q Consensus       140 ~y~C~~~~~~~~~~~~~~~l~v~~~  164 (232)
                      .|.|.+.|..|......+.+.+...
T Consensus        86 ~Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           86 VYVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEC--
T ss_pred             EEEEEEEeCccceEeeeEEEEhhhh
Confidence            9999999998886666677766543

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.38  E-value=5.9e-12  Score=78.41  Aligned_cols=82  Identities=17%  Similarity=0.252  Sum_probs=61.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCCC---CeEEEEeCCeeeCC---CCcEEe----------eCCeEEECCCCCCCCeEEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAILP---NGQTIF----------TGSTLQIPRITKEDRGAYYC  143 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~~~~~~~---~~~~~~----------~~~~l~i~~~~~~~~g~y~C  143 (232)
                      .+....+.+|+.+.|.|.+.|.|.   +.+.|++++.....   ..++..          ....|.|.+++.+|+|.|+|
T Consensus        10 ~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (108)
T 3cx2_A           10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRC   89 (108)
T ss_dssp             CCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEE
T ss_pred             CCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEE
Confidence            566778889999999999999887   89999997632211   112211          13579999999999999999


Q ss_pred             EeEeCCCCceeeEEEEEEE
Q psy15206        144 VAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus       144 ~~~~~~~~~~~~~~~l~v~  162 (232)
                      .+.|..|. ....+.|.|.
T Consensus        90 ~a~N~~G~-~~~~~~L~V~  107 (108)
T 3cx2_A           90 EVSTKDKF-DCSNFNLTVH  107 (108)
T ss_dssp             EEECSSCE-EEEEEEEEEE
T ss_pred             EEecCCCc-eEEEEEEEEe
Confidence            99998886 5566666664

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.38  E-value=6.3e-12  Score=78.94  Aligned_cols=94  Identities=22%  Similarity=0.416  Sum_probs=69.5

Q ss_pred             cCceeecCCc-EEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-CC---eEEECCCCCCCCe
Q psy15206         65 SPEAQVDTPP-VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-GS---TLQIPRITKEDRG  139 (232)
Q Consensus        65 ~~~l~v~~~p-~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~---~l~i~~~~~~~~g  139 (232)
                      ...|.|...| .+.. .+....+.+|+.+.|.|.+.+.  +.+.|++++..+....++... ++   .|.|.++..+|.|
T Consensus        10 ~~~l~V~~~pp~~~~-~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
T 2edh_A           10 SAMLTVRALPIKFTE-GLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAG   86 (113)
T ss_dssp             CCCCCCCCSCCCEEE-CCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCE
T ss_pred             EEEEEEEcCCCcccc-cCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCE
Confidence            4566776444 4433 4566788899999999999764  689999999887655554332 33   7999999999999


Q ss_pred             EEEEEeEeCCCCceeeEEEEEEEeccE
Q psy15206        140 AYYCVAQNGIGRGARRKIEVKVEFAPI  166 (232)
Q Consensus       140 ~y~C~~~~~~~~~~~~~~~l~v~~~p~  166 (232)
                      .|.|.+    +. ......|.|..+|.
T Consensus        87 ~Y~C~a----~~-~~~~~~l~V~~~p~  108 (113)
T 2edh_A           87 EYLCMC----GK-ERTSAMLTVRAMPS  108 (113)
T ss_dssp             EEEEEE----TT-EEEEEEEEECCCCC
T ss_pred             EEEEEe----CC-CCEEEEEEEeCCCC
Confidence            999999    33 55667777776654

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1.3e-12  Score=80.79  Aligned_cols=92  Identities=14%  Similarity=0.118  Sum_probs=67.8

Q ss_pred             ecCCcEEecCCCCceEeecCCcEEEEeeeccCCC-CeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEE
Q psy15206         70 VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI-PTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCV  144 (232)
Q Consensus        70 v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~  144 (232)
                      |..+|..+...+....+.+|+.+.|.|.+.+.+. +.+.|+++|..+....++...    ...|.|.++..+|+|.|+|.
T Consensus         4 V~~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T 2eny_A            4 GSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFS   83 (104)
T ss_dssp             CCCCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEE
T ss_pred             cccCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEE
Confidence            4444444444567788999999999999988764 479999999887655544332    23799999999999999998


Q ss_pred             eEeCCCCceeeEEEEEEEeccE
Q psy15206        145 AQNGIGRGARRKIEVKVEFAPI  166 (232)
Q Consensus       145 ~~~~~~~~~~~~~~l~v~~~p~  166 (232)
                      +.+     ......|.|..+|.
T Consensus        84 a~~-----~~~~a~L~V~~~p~  100 (104)
T 2eny_A           84 VRG-----LTSKASLIVRERSG  100 (104)
T ss_dssp             ETT-----EEEEECEEEECCCS
T ss_pred             ECC-----eeEEEEEEEeCCCc
Confidence            743     34566777776653

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.38  E-value=3.9e-12  Score=104.86  Aligned_cols=136  Identities=11%  Similarity=0.102  Sum_probs=95.2

Q ss_pred             CcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCC-CCCCCeEEEEEeEeCCCCceeeEEEEEE---Eecc
Q psy15206         90 QSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRI-TKEDRGAYYCVAQNGIGRGARRKIEVKV---EFAP  165 (232)
Q Consensus        90 ~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~~~~~~~~~~~~~~~l~v---~~~p  165 (232)
                      ..+.+.|.+.|.|.+.+.|.++|.......     ...+.|..+ .....+.|.|.+.+..|......+.+..   ..+|
T Consensus        92 g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~-----~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p  166 (731)
T 2v5y_A           92 GLLNVYVKVNNGPLGNPIWNISGDPTRTWN-----RAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTP  166 (731)
T ss_dssp             EEEEEEEEETTCCCCSEEEEECCCCCSSCE-----EEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSC
T ss_pred             ceEEEEEecCCCCccceeEEEeCCcCCcee-----EEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccccc
Confidence            478999999999999999999997753221     123455544 2233478888776666643322222222   2456


Q ss_pred             EEEeccceeeeeccCeEEEEEEeecCCCCeEE-Ee--eCCEEecCC---------CeEEEEEeccccCCceEEEEecC
Q psy15206        166 IVTVQSTRIGQALHHDMDLDCHIEAYPHPILY-WA--KDGEIVVND---------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       166 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~-W~--~~g~~~~~~---------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+. .+.+..+..|+++.|.|.+.|.|.|.+. |+  ++|..+...         ....+.+.++...|.|.|+|.|.
T Consensus       167 ~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~  243 (731)
T 2v5y_A          167 HFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR  243 (731)
T ss_dssp             EEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             ccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEE
Confidence            665 5667888999999999999999999987 88  777654321         13477788888999999999974

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.37  E-value=2.6e-12  Score=90.80  Aligned_cols=129  Identities=19%  Similarity=0.289  Sum_probs=81.1

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCc--E--e------------------e---------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNF--K--R------------------L---------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~--~--~------------------~---------------------   54 (232)
                      +.++.+.+|++++|.|.+.+.+  .+.+.|+|+.  .  .                  .                     
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (225)
T 1op3_H            7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (225)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence            5678899999999999999765  6789999832  0  0                  0                     


Q ss_pred             -----eeEEEEeeee--------------cCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEEEE
Q psy15206         55 -----GRLHLAIPYT--------------SPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWR  109 (232)
Q Consensus        55 -----~~~~~~~~~~--------------~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~  109 (232)
                           |.|.|.....              ...|.|..    +|.+....+.. .+..|+.+.|.|.+.+. |.+ .+.|+
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v~W~  165 (225)
T 1op3_H           87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWN  165 (225)
T ss_dssp             CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred             ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEEEEe
Confidence                 1333332111              12344443    23332212221 23578999999999885 666 89999


Q ss_pred             eCCeeeCC--------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206        110 RENNAILP--------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       110 ~~~~~~~~--------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      +++..+..        ........+.|.|..+..+| |.|+|.+.|..+
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~  213 (225)
T 1op3_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  213 (225)
T ss_dssp             TTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGG
T ss_pred             cCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCC
Confidence            98865210        00111112358888888888 999999999643

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=1.8e-12  Score=82.22  Aligned_cols=84  Identities=17%  Similarity=0.213  Sum_probs=63.2

Q ss_pred             CCCCceEeecCCcEEEEeeeccC---CCCeEEEEeCCeee-C--CCCcEEe----------eCCeEEECCCCCCCCeEEE
Q psy15206         79 NSPQLSVAKEGQSVQLECHAEGH---PIPTISWRRENNAI-L--PNGQTIF----------TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        79 ~~~~~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~-~--~~~~~~~----------~~~~l~i~~~~~~~~g~y~  142 (232)
                      ..+....+.+|+.+.|.|.+.+.   |.|.+.|||+.... .  ...+...          ....|.|.++...|+|.|+
T Consensus        12 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~   91 (126)
T 2dav_A           12 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   91 (126)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             EcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEE
Confidence            35677788999999999998764   78899999963110 0  0112211          1357999999999999999


Q ss_pred             EEeEeCCCCceeeEEEEEEEe
Q psy15206        143 CVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       143 C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      |.+.|..+. ....+.|.|..
T Consensus        92 Cevsn~~g~-~~~~~~L~V~~  111 (126)
T 2dav_A           92 CEVTYKDKF-DSCSFDLEVHE  111 (126)
T ss_dssp             EEEECSSCE-EEECCEEEEEC
T ss_pred             EEEEeCCCc-EEEEEEEEEEe
Confidence            999998765 66778888887

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.37  E-value=4e-12  Score=90.03  Aligned_cols=130  Identities=21%  Similarity=0.293  Sum_probs=81.7

Q ss_pred             CcceEeecCCeEEEEEEecCCCC----CeEEEEeCc--Ee-------------------e--------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPI----PTISWRRNF--KR-------------------L--------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~----~~~~W~~~~--~~-------------------~--------------------   54 (232)
                      +.++.+.+|++++|.|.+.+.+.    +.+.|+|+.  ..                   .                    
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            56788999999999999998664    889999832  00                   0                    


Q ss_pred             ------eeEEEEeeee---------------cCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEE
Q psy15206         55 ------GRLHLAIPYT---------------SPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TIS  107 (232)
Q Consensus        55 ------~~~~~~~~~~---------------~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~  107 (232)
                            |.|.|.....               ...|.|..    +|.+....+. ..+..|+.+.|.|.+.+. |.+ .+.
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~~~l~C~~~g~~P~p~~v~  165 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLT  165 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEEBSSCCEEE
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEeccc-ccccCCCCEEEEEEEccEeCCCEEEE
Confidence                  2344443211               13455542    2333321222 234579999999999885 766 899


Q ss_pred             EEeCCeeeCCCC-------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        108 WRRENNAILPNG-------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       108 W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      |++++..+....       ......+.|.|..+..++ |.|+|.+.|..+.
T Consensus       166 W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~  215 (228)
T 3bae_H          166 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASS  215 (228)
T ss_dssp             EGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             EeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCC
Confidence            999876421100       111123468888888766 9999999997664

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=4.7e-12  Score=78.12  Aligned_cols=87  Identities=18%  Similarity=0.361  Sum_probs=64.8

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEee-C---CeEEECCCCCCCCeEEEEEeE
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIFT-G---STLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~~-~---~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      +|..+...+....+.+|+.+.|.|.+.+ +.+.+.|++++..+....  ++... .   ..|.|.++..+|.|.|+|.+.
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   84 (103)
T 1x44_A            6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTT   84 (103)
T ss_dssp             SSCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEET
T ss_pred             CCceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEEC
Confidence            3433333566678889999999999977 668899999999876554  32332 1   479999999999999999997


Q ss_pred             eCCCCceeeEEEEEEEecc
Q psy15206        147 NGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p  165 (232)
                      |     ......+.|..+|
T Consensus        85 n-----~~~~~~l~V~~~p   98 (103)
T 1x44_A           85 G-----GQSSAKLSVDLKS   98 (103)
T ss_dssp             T-----EEEEEEEEEECCC
T ss_pred             C-----CcEEEEEEEeCCC
Confidence            6     3455666666544

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.37  E-value=1.7e-12  Score=86.24  Aligned_cols=72  Identities=22%  Similarity=0.372  Sum_probs=60.6

Q ss_pred             EEEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe----------EEEEEeccccCCceEEEEe
Q psy15206        160 KVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY----------HSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       160 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~~d~g~Y~C~  229 (232)
                      .+..+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|+|..+....+          ..|.+.++...|+|.|+|.
T Consensus        37 ~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  116 (154)
T 1fhg_A           37 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK  116 (154)
T ss_dssp             CCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred             cCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEE
Confidence            345678888888888899999999999999999999999999988765443          4677778888999999998


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus       117 a~  118 (154)
T 1fhg_A          117 AV  118 (154)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.36  E-value=2e-11  Score=87.23  Aligned_cols=136  Identities=18%  Similarity=0.245  Sum_probs=82.8

Q ss_pred             CeeecCCCcceEeecCCeEEEEEEecCC--CCCeEEEEeCc--E--------------------eee-------------
Q psy15206         13 PVILNNSTQLSVAKEGQSVQLECHAEGH--PIPTISWRRNF--K--------------------RLG-------------   55 (232)
Q Consensus        13 P~i~~~~~~~~~~~~G~~v~l~C~~~~~--p~~~~~W~~~~--~--------------------~~~-------------   55 (232)
                      +.++.. +..+.+.+|++++|.|.+.+.  +...+.|+|+.  .                    ..+             
T Consensus         2 ~~v~q~-p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~   80 (242)
T 1hxm_B            2 GHLEQP-QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTS   80 (242)
T ss_dssp             CEEECC-CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEE
T ss_pred             CccCcC-CceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEE
Confidence            345544 778899999999999999875  56789999831  0                    112             


Q ss_pred             -------------eEEEEeeee-------------cCceeecCC-------cEEecCCCCceEeecCCcEEEEeeeccC-
Q psy15206         56 -------------RLHLAIPYT-------------SPEAQVDTP-------PVILNNSPQLSVAKEGQSVQLECHAEGH-  101 (232)
Q Consensus        56 -------------~~~~~~~~~-------------~~~l~v~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~-  101 (232)
                                   .|.|.....             ...|.|...       |......+....+..|+.+.|.|.+.+. 
T Consensus        81 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~  160 (242)
T 1hxm_B           81 TLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFF  160 (242)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEES
T ss_pred             EEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEE
Confidence                         233332111             123444431       1111111222234468999999999885 


Q ss_pred             CC-CeEEEEeCCe-eeCCCC---cE-----EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206        102 PI-PTISWRRENN-AILPNG---QT-----IFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       102 ~~-~~~~W~~~~~-~~~~~~---~~-----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      |. +.+.|++++. .+....   ..     ....+.|.|..... + |.|+|.+.|..+.
T Consensus       161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~  218 (242)
T 1hxm_B          161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNK  218 (242)
T ss_dssp             SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSG
T ss_pred             CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCC
Confidence            54 6899999987 442210   00     11123688877765 4 9999999998665

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.36  E-value=1.3e-12  Score=93.13  Aligned_cols=139  Identities=12%  Similarity=0.149  Sum_probs=80.0

Q ss_pred             CCCeeecCCCcceE-eecCCeEEEEEEecCC---CCC-eEEEEeCcEee-------------------------------
Q psy15206         11 TPPVILNNSTQLSV-AKEGQSVQLECHAEGH---PIP-TISWRRNFKRL-------------------------------   54 (232)
Q Consensus        11 ~~P~i~~~~~~~~~-~~~G~~v~l~C~~~~~---p~~-~~~W~~~~~~~-------------------------------   54 (232)
                      .+|.+...++.... +.+|++++|.|.+.+.   |.+ .+.|+|++...                               
T Consensus        14 ~~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D   93 (239)
T 1i1c_A           14 EVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLN   93 (239)
T ss_dssp             ---CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHT
T ss_pred             cCCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccC
Confidence            35666555233333 7899999999999875   654 89999954221                               


Q ss_pred             -eeEEEEeeeecC------ce----eecCCcEEecCCCCceEeecCCcEEEEeeecc-CCC-CeEEEEeCCeeeCCCCc-
Q psy15206         55 -GRLHLAIPYTSP------EA----QVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPI-PTISWRRENNAILPNGQ-  120 (232)
Q Consensus        55 -~~~~~~~~~~~~------~l----~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~~~W~~~~~~~~~~~~-  120 (232)
                       |.|.|...+...      .+    .+..+|.+....... ....|+.+.|.|.+.| .|. ..+.|+++|..+..... 
T Consensus        94 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~-~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~  172 (239)
T 1i1c_A           94 GKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPK-EEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNT  172 (239)
T ss_dssp             TCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCG-GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred             CCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCCh-HHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceec
Confidence             244444422211      11    233445443222221 1224788999999988 454 37999999987642111 


Q ss_pred             --EEeeCC------eEEECCCCCCCCeEEEEEeEeCCC
Q psy15206        121 --TIFTGS------TLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       121 --~~~~~~------~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                        ....++      .|.+......+.|.|+|.+.|...
T Consensus       173 ~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          173 PPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence              111222      234444444568999999999654

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.36  E-value=1.3e-11  Score=74.56  Aligned_cols=67  Identities=12%  Similarity=0.080  Sum_probs=55.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-C---CeEEECCCCCCCCeEEEEEeEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-G---STLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~---~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+....+.+|+.+.|.|.+.+ +.+.+.|+++|..+....+.... .   ..|.|.++..+|.|.|+|.+.|
T Consensus        11 ~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A           11 PLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             cCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            566778889999999999976 45789999999988665554332 2   3799999999999999999976

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.3e-12  Score=80.21  Aligned_cols=66  Identities=17%  Similarity=0.173  Sum_probs=54.3

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+.+..+..|+.+.|.|.+  .|.+.+.|+|||..+..+.+         ..|.+.++..+|+|.|+|.|.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPD   81 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEES
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEc
Confidence            4555566777889999999999999  78889999999988865443         356777888899999999974

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.35  E-value=6e-12  Score=91.93  Aligned_cols=66  Identities=17%  Similarity=0.312  Sum_probs=47.1

Q ss_pred             eEeecCCcEEEEeeecc-CC-CCeEEEEeCC--eeeC------------CCCcEEee----CCeEEECCCCCCCCeEEEE
Q psy15206         84 SVAKEGQSVQLECHAEG-HP-IPTISWRREN--NAIL------------PNGQTIFT----GSTLQIPRITKEDRGAYYC  143 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~-~~-~~~~~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~~~g~y~C  143 (232)
                      ..+.+|+++.|.|.+.+ .+ .+.+.|++..  ..+.            ...++...    ...|.|.+++.+|+|.|.|
T Consensus       149 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C  228 (280)
T 3fku_X          149 VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYC  228 (280)
T ss_dssp             EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEE
T ss_pred             EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEE
Confidence            67889999999999987 43 3689999742  2111            01122211    1259999999999999999


Q ss_pred             EeEeCC
Q psy15206        144 VAQNGI  149 (232)
Q Consensus       144 ~~~~~~  149 (232)
                      .+.+..
T Consensus       229 ~~~~~~  234 (280)
T 3fku_X          229 STWDSS  234 (280)
T ss_dssp             EEEETT
T ss_pred             EEecCC
Confidence            998864

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.9e-12  Score=78.60  Aligned_cols=69  Identities=20%  Similarity=0.331  Sum_probs=57.2

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC-CC------eEEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN-DE------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-~~------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|+|..+.. ..      ...|.+.++...|+|.|+|.|.
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVAT   82 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEE
Confidence            467777778888889999999999999999999999999987762 11      2257777888899999999874

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.35  E-value=7e-11  Score=80.10  Aligned_cols=146  Identities=13%  Similarity=0.166  Sum_probs=95.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeC-CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG-STLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      .+....+..|+++.|+|......+..+.|...-.....   ....+ ..+.|.++.  +.|.|.|.+...... ..+.+.
T Consensus         8 ~P~~~~V~~G~S~~l~Cs~~c~~p~~~glet~l~~~~~---~~g~~w~~l~l~~vs--~~g~~~C~~~c~~~~-~~~~~~   81 (192)
T 1zxq_A            8 RPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILL---DEQAQWKHYLVSNIS--HDTVLQCHFTCSGKQ-ESMNSN   81 (192)
T ss_dssp             ESSEEEECTTEEEEEEEEESCSSCSEEEEECSSEEEEE---EEETTEEEEEEEEEC--SCEEEEEEEEETTEE-EEEEEE
T ss_pred             eCCCcEEeCCCcEEEEEECCCCCccccccccccCceEE---cCCCCeEEEEEeccc--cCCeeEEEEECCCcc-eEEEEE
Confidence            34566778899999999986433334666542221100   01111 358888988  788999999875433 557788


Q ss_pred             EEEEeccE-EEeccceeeeeccCeEEEEEEeec-CCCCe--EEEeeCCEEecCC---------CeEEEE-EeccccCCce
Q psy15206        159 VKVEFAPI-VTVQSTRIGQALHHDMDLDCHIEA-YPHPI--LYWAKDGEIVVND---------EYHSIS-NFGTSEGTTG  224 (232)
Q Consensus       159 l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--~~W~~~g~~~~~~---------~~~~~~-~~~~~~~d~g  224 (232)
                      +.|+.+|. +.+.+.+..+..|+.++|.|.+.+ .|...  +.|+|++..+...         ....+. ...++.+|.|
T Consensus        82 itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f~~~~~~~~~~tv~~~~~~~r~D~g  161 (192)
T 1zxq_A           82 VSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGH  161 (192)
T ss_dssp             EEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGG
T ss_pred             EEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeecccccccCcCcceEEEEEEecchhhCC
Confidence            88888774 344433345789999999999975 66654  8999998776421         122222 2234556777


Q ss_pred             -EEEEecC
Q psy15206        225 -SLQCKVP  231 (232)
Q Consensus       225 -~Y~C~~~  231 (232)
                       +|.|+|.
T Consensus       162 ~~~sC~A~  169 (192)
T 1zxq_A          162 RNFSCLAV  169 (192)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEEE
Confidence             9999985

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.35  E-value=5.9e-12  Score=76.76  Aligned_cols=65  Identities=20%  Similarity=0.213  Sum_probs=53.3

Q ss_pred             EEeccceeeeeccCeEEEEEEeecC-CCCeEEEeeCCEEecCCCeE---------EEEEeccccCCceEEEEecC
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAY-PHPILYWAKDGEIVVNDEYH---------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~g~~~~~~~~~---------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +...+.+..+..|+.+.|.|.+.|. |.+.+.|+|++..+....++         .|.+.++...|+|.|.|.|.
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVV   78 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEE
Confidence            3445667788899999999999997 88999999999887655443         56677788899999999874

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1e-11  Score=77.91  Aligned_cols=82  Identities=21%  Similarity=0.447  Sum_probs=64.0

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-C---CeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-G---STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~---~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      ..+.+|+.+.|.|.+. .+.+.+.|++++..+....+.... .   ..|.|.++..+|.|.|.|.+.|     ....+.|
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-----~~~~~~l   96 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDD-----ESASFTV   96 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEESSS-----CEEEEEE
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEEec-----CcEEEEE
Confidence            5677899999999995 677889999999887654443332 2   4799999999999999999987     3456788


Q ss_pred             EEEeccEEEecc
Q psy15206        160 KVEFAPIVTVQS  171 (232)
Q Consensus       160 ~v~~~p~~~~~~  171 (232)
                      .|..+|.....+
T Consensus        97 ~V~~~p~~~~~p  108 (113)
T 2cpc_A           97 TVTEPPVRIIYS  108 (113)
T ss_dssp             EEECCCCCCCCC
T ss_pred             EEecCCchhccC
Confidence            888877654443

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.34  E-value=1.2e-12  Score=78.66  Aligned_cols=56  Identities=20%  Similarity=0.380  Sum_probs=45.9

Q ss_pred             eeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCceEEEEecC
Q psy15206        175 GQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+..|+++.|.|.+.+ |.+.+.|+|||..+..+.+         ..|.+.++..+|+|.|+|.|.
T Consensus        17 ~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (91)
T 2lvc_A           17 HAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAG   81 (91)
T ss_dssp             ECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECS
T ss_pred             EEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEc
Confidence            4457999999999855 8889999999988765443         467777888899999999874

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.34  E-value=9.9e-12  Score=77.25  Aligned_cols=84  Identities=15%  Similarity=0.312  Sum_probs=63.8

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe-eeC-------CCCcEEe-----eCCeEEECCCCCCCCeEEEEEeE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN-AIL-------PNGQTIF-----TGSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~-~~~-------~~~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      .+....+.+|+++.|.|.+.+.+.+.+.|++++. .+.       ...++..     ...+|.|.++..+|.|.|+|.+.
T Consensus        12 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   91 (108)
T 3m45_A           12 LTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLF   91 (108)
T ss_dssp             ECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEE
Confidence            4566788899999999999998888999998775 211       1223332     24579999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEecc
Q psy15206        147 NGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p  165 (232)
                      + .+. ....+.|.|..+|
T Consensus        92 n-~~~-~~~~~~L~V~~~P  108 (108)
T 3m45_A           92 T-MPV-KTSKAYLTVLGVP  108 (108)
T ss_dssp             S-SSC-EEEEEEEEEECCC
T ss_pred             c-CCC-cEEEEEEEEEcCC
Confidence            9 554 5667777776654

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.33  E-value=3.7e-12  Score=80.37  Aligned_cols=69  Identities=19%  Similarity=0.339  Sum_probs=57.8

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----------CeEEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+.+..+..|+++.|.|.+.|.|.+.+.|+++|..+...           ..+.|.+.++...|+|.|+|.|.
T Consensus        14 ~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   93 (116)
T 2kkq_A           14 RAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAV   93 (116)
T ss_dssp             BCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEE
T ss_pred             CCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEE
Confidence            4677777788888999999999999999999999999999877532           23367778888899999999873

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.33  E-value=3e-13  Score=86.25  Aligned_cols=96  Identities=30%  Similarity=0.478  Sum_probs=73.6

Q ss_pred             cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCe-EEEEeCCeeeCC--CCcEEee--------CCeEEECCC
Q psy15206         65 SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPT-ISWRRENNAILP--NGQTIFT--------GSTLQIPRI  133 (232)
Q Consensus        65 ~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~--~~~~~~~--------~~~l~i~~~  133 (232)
                      .+.|.|..+|.+..  +....+.+|+.+.|.|.+.|.|.|. +.|++++..+..  ..++...        .+.|.|.++
T Consensus         6 ~~~l~V~~~P~i~~--~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v   83 (122)
T 2cry_A            6 SGTLTVNGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNI   83 (122)
T ss_dssp             CCCCCCCSSCCEEE--ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTC
T ss_pred             EEEEEEecCCCccC--CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCC
Confidence            45678888887765  4556778899999999999999987 999999987754  2333221        237999999


Q ss_pred             CCCCC-eEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206        134 TKEDR-GAYYCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       134 ~~~~~-g~y~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      ...|. |.|.|.+.|..|. ....+.|.|..
T Consensus        84 ~~~D~~G~Y~C~a~N~~G~-~~~~~~l~V~~  113 (122)
T 2cry_A           84 VRADFQTIYNCTAWNSFGS-DTEIIRLKEQG  113 (122)
T ss_dssp             CHHHHHSCEEEEEECSSCE-EEEEECCCCSC
T ss_pred             ChhhCCceEEEEEECCCCe-EEEEEEEEECC
Confidence            99999 9999999999887 44555555543

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.33  E-value=1.4e-12  Score=80.97  Aligned_cols=69  Identities=12%  Similarity=0.292  Sum_probs=58.2

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|+|..+....+         ..|.+.++...|+|.|+|.|.
T Consensus        13 ~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           13 LAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             CCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred             CCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence            456777788888899999999999999999999999999877654433         467777888899999999874

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.33  E-value=1.9e-12  Score=78.66  Aligned_cols=67  Identities=15%  Similarity=0.234  Sum_probs=54.6

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeE-----EEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH-----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~-----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+....+..|+.+.|.|.+.|.| +.+.|+|+|..+....++     .|.+.++...|+|.|.|.|.
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   80 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTS   80 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEec
Confidence            44555556777888999999999999997 799999999887655444     47777888899999999873

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=1.2e-12  Score=81.87  Aligned_cols=69  Identities=23%  Similarity=0.380  Sum_probs=58.2

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC----------eEEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE----------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+....+..|+.+.|.|.+.+.|.+.+.|+|+|..+....          ...|.+.++...|+|.|+|.|.
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            46778778888889999999999999999999999999987665332          3467888889999999999874

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=5.8e-12  Score=77.72  Aligned_cols=86  Identities=20%  Similarity=0.364  Sum_probs=65.2

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-C---CeEEECCCCCCCCeEEEEEeEeC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-G---STLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~---~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      +|.+.. .+....+.+|+.+.|.|.+.+ +.+.+.|++++..+....++... .   ..|.|.++..+|.|.|+|.+.| 
T Consensus         8 pp~~~~-~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n-   84 (103)
T 2edf_A            8 PAAIIK-PLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA-   84 (103)
T ss_dssp             CCCEEE-CCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS-
T ss_pred             CcEEEe-cCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc-
Confidence            344433 556678889999999999987 77789999999887655554332 2   2699999999999999999988 


Q ss_pred             CCCceeeEEEEEEEecc
Q psy15206        149 IGRGARRKIEVKVEFAP  165 (232)
Q Consensus       149 ~~~~~~~~~~l~v~~~p  165 (232)
                          ....+.|.|..+|
T Consensus        85 ----~~~~~~l~V~~~p   97 (103)
T 2edf_A           85 ----SKSTASLHVEEKA   97 (103)
T ss_dssp             ----CEEEEEEEECCCS
T ss_pred             ----CCcEEEEEEeCCC
Confidence                2456677776554

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.33  E-value=3.4e-11  Score=82.07  Aligned_cols=118  Identities=14%  Similarity=0.192  Sum_probs=75.2

Q ss_pred             CcceEeecCCeEEEEEEecC-CCCCeEEEEeC-cEee-----------------eeE----------------------E
Q psy15206         20 TQLSVAKEGQSVQLECHAEG-HPIPTISWRRN-FKRL-----------------GRL----------------------H   58 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~-~p~~~~~W~~~-~~~~-----------------~~~----------------------~   58 (232)
                      ..++.+.+|++|+|.|.+.. .+.+.|.|+|. ...+                 +|+                      .
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~   85 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY   85 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence            45678999999999999865 34689999993 1100                 222                      2


Q ss_pred             EEeee-----ecCceeecCCcEEecCCCCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECC
Q psy15206         59 LAIPY-----TSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR  132 (232)
Q Consensus        59 ~~~~~-----~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~  132 (232)
                      |....     ..+.|.|..++      ........+..+.|.|.+ .+ |.+.+.|++++..+.     ...+.+|.+..
T Consensus        86 C~v~~~~~~~~~~~L~V~~~~------~~P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-----~~~~~~l~~~~  153 (180)
T 2dru_A           86 MRMLHETEDQWKITMEVYEMV------SKPMIYWECSNATLTCEVLEG-TDVELKLYQGKEHLR-----SLRQKTMSYQW  153 (180)
T ss_dssp             EEEESSSEEEEEEEEEEECCC------CCCEEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE-----EESSSEEEEEC
T ss_pred             EEEEcCCeEEEEEEEEEECCC------CCCEEEecCCCEEEEEEeCCC-CCCEEEEEECCeECc-----CCCCCEEEEEE
Confidence            22100     02233333221      111122245679999999 55 888999999998764     22344566633


Q ss_pred             CCCCCCeEEEEEeEeCCCC
Q psy15206        133 ITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       133 ~~~~~~g~y~C~~~~~~~~  151 (232)
                        .+|.|.|+|.+.|..+.
T Consensus       154 --~~d~g~Y~C~a~N~~~~  170 (180)
T 2dru_A          154 --TNLRAPFKCKAVNRVSQ  170 (180)
T ss_dssp             --SCCSSCEEEEEEETTEE
T ss_pred             --hhcCccEEEEEecCcCc
Confidence              78999999999998765

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=2e-12  Score=80.81  Aligned_cols=69  Identities=17%  Similarity=0.340  Sum_probs=56.3

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC-C----------CeEEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN-D----------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-~----------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|+|..+.. .          ..+.|.+.++...|+|.|+|.|.
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAA   86 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEE
Confidence            356666667777889999999999999999999999999877653 2          23367777888999999999874

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4.3e-11  Score=74.45  Aligned_cols=83  Identities=11%  Similarity=0.131  Sum_probs=64.7

Q ss_pred             cCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC----------cEEeeC----CeEEECCCCCCCCeEEEE
Q psy15206         78 NNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG----------QTIFTG----STLQIPRITKEDRGAYYC  143 (232)
Q Consensus        78 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~----------~~~~~~----~~l~i~~~~~~~~g~y~C  143 (232)
                      ...+....+.+|+.+.|.|.+.+  .+.+.|+++|..+....          ++....    .+|.|.++..+|+|.|+|
T Consensus        12 ~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~G~Y~~   89 (112)
T 2e6q_A           12 VAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDSGALVG   89 (112)
T ss_dssp             EECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTCSEEEE
T ss_pred             ecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHCccEEE
Confidence            34677788999999999999987  67899999999987665          544432    279999999999999988


Q ss_pred             EeEeCCCCceeeEEEEEEEeccE
Q psy15206        144 VAQNGIGRGARRKIEVKVEFAPI  166 (232)
Q Consensus       144 ~~~~~~~~~~~~~~~l~v~~~p~  166 (232)
                      ...+.    ......|.|..+|.
T Consensus        90 ~~~~~----~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           90 FSCPG----VQDSAALTIQESSG  108 (112)
T ss_dssp             EEETT----EEEEEEEEEECSSC
T ss_pred             EEECC----eeEEEEEEEeCCCc
Confidence            65532    34567888877663

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=2.9e-12  Score=80.29  Aligned_cols=85  Identities=19%  Similarity=0.242  Sum_probs=63.4

Q ss_pred             cCCCCceEeecCCcEEEEeeeccC---CCCeEEEEeCCeee-CC--CCcEEe----------eCCeEEECCCCCCCCeEE
Q psy15206         78 NNSPQLSVAKEGQSVQLECHAEGH---PIPTISWRRENNAI-LP--NGQTIF----------TGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        78 ~~~~~~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~-~~--~~~~~~----------~~~~l~i~~~~~~~~g~y  141 (232)
                      ...+....+.+|+.+.|.|.+.+.   |.|.+.||++.... ..  ..++..          ....|.|.++...|+|.|
T Consensus        16 ~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   95 (118)
T 2edn_A           16 LKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYY   95 (118)
T ss_dssp             SBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCE
T ss_pred             EECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEE
Confidence            345677889999999999999774   67899999964111 10  111111          136799999999999999


Q ss_pred             EEEeEeCCCCceeeEEEEEEEe
Q psy15206        142 YCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       142 ~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      +|.+.+..+. .+..+.|.|..
T Consensus        96 ~Cevsn~~g~-~s~~~~L~V~~  116 (118)
T 2edn_A           96 RLEVKAKDTC-DSCGFNIDVEA  116 (118)
T ss_dssp             EEEEECSSCE-EEEEECCEEEC
T ss_pred             EEEEEEcCCc-EEEEEEEEEEc
Confidence            9999998886 66777777765

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.31  E-value=3.2e-11  Score=73.93  Aligned_cols=87  Identities=22%  Similarity=0.355  Sum_probs=64.5

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee--C--CeEEECCCCCCCCeEEEEEeEeC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--G--STLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      +|.+.........+.+|+.+.|.|.+. .|.+.+.|++++..+....++...  .  ..|.|.++..+|.|.|.|.+   
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a---   82 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA---   82 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE---
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE---
Confidence            455554333335677899999999998 688899999999887655444332  1  26999999999999999999   


Q ss_pred             CCCceeeEEEEEEEecc
Q psy15206        149 IGRGARRKIEVKVEFAP  165 (232)
Q Consensus       149 ~~~~~~~~~~l~v~~~p  165 (232)
                       +. ......|.|..+|
T Consensus        83 -g~-~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 -GD-EKCSTELFVRSGP   97 (100)
T ss_dssp             -TT-EEEEEEEEECCSC
T ss_pred             -CC-ceEEEEEEEecCC
Confidence             33 4556677777665

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.30  E-value=1.5e-11  Score=87.63  Aligned_cols=138  Identities=11%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             CCCeeecCCCcceE-eecCCeEEEEEEecCC---C-CCeEEEEeCcEee-------------e-----------------
Q psy15206         11 TPPVILNNSTQLSV-AKEGQSVQLECHAEGH---P-IPTISWRRNFKRL-------------G-----------------   55 (232)
Q Consensus        11 ~~P~i~~~~~~~~~-~~~G~~v~l~C~~~~~---p-~~~~~W~~~~~~~-------------~-----------------   55 (232)
                      .+|.+.+.+|.... +..|++++|.|.+.+.   | ...++|++++..+             +                 
T Consensus        21 ~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d  100 (240)
T 4acp_A           21 GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLN  100 (240)
T ss_dssp             --CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHH
T ss_pred             CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccC
Confidence            36777666455555 6679999999999985   3 4589999976542             2                 


Q ss_pred             --eEEEEeeeec--------Cc--eeecCCcEEecCCCCceEeecCCcEEEEeeecc-CCCC-eEEEEeCCeeeCCCC--
Q psy15206         56 --RLHLAIPYTS--------PE--AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIP-TISWRRENNAILPNG--  119 (232)
Q Consensus        56 --~~~~~~~~~~--------~~--l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~~~~--  119 (232)
                        .|.|.+....        +.  +.+..+|.+....+... ...|+.+.|.|.+.+ +|.+ .+.|+++|..+....  
T Consensus       101 ~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~  179 (240)
T 4acp_A          101 GKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKAT  179 (240)
T ss_dssp             TCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred             CCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChH-HhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCcc
Confidence              3333332211        11  11223444433222211 224889999999998 4553 799999998753210  


Q ss_pred             -------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206        120 -------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus       120 -------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                             ......+.|.+......+.|.|+|.+.+..
T Consensus       180 ~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~  216 (240)
T 4acp_A          180 PPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  216 (240)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECC
Confidence                   111112345565555567889999999864

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=8.8e-12  Score=78.90  Aligned_cols=69  Identities=13%  Similarity=0.210  Sum_probs=55.2

Q ss_pred             eccEEEe---ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC--------CeEEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTV---QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND--------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+..   .+....+..|+.+.|.|.+.|.|.|.+.|+|+|..+...        ....|.+.++...|+|.|+|.|.
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   99 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ   99 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEE
Confidence            4566644   245677889999999999999999999999999887521        23457788889999999999873

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.30  E-value=2.6e-11  Score=87.64  Aligned_cols=129  Identities=19%  Similarity=0.261  Sum_probs=81.2

Q ss_pred             CcceEeecCCeEEEEEEecCCC--CCeEEEEeCc----Ee------------------ee--------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHP--IPTISWRRNF----KR------------------LG--------------------   55 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p--~~~~~W~~~~----~~------------------~~--------------------   55 (232)
                      +.++.+.+|++|+|.|.+.+.+  .+.+.|+|+.    ..                  .+                    
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   92 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSL   92 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCC
Confidence            5678899999999999999765  6789999842    10                  01                    


Q ss_pred             ------eEEEEeee---------ecCceeecC----CcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEEEEeCCee
Q psy15206         56 ------RLHLAIPY---------TSPEAQVDT----PPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWRRENNA  114 (232)
Q Consensus        56 ------~~~~~~~~---------~~~~l~v~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~  114 (232)
                            .|.|....         ....|.|..    +|.+....+. ..+..|+.+.|.|.+.+. |.+ .+.|++++..
T Consensus        93 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~  171 (261)
T 2xqy_G           93 TSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS  171 (261)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-CC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred             CcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCC-ccccCCCcEEEEEEEEeEeCCCCEEEEecCCCc
Confidence                  23333211         022455543    2333221222 234578999999999874 665 8999998865


Q ss_pred             eCC--CC-----cEEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206        115 ILP--NG-----QTIFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus       115 ~~~--~~-----~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      +..  ..     ......+.|.|..+..+| |.|+|.+.|...
T Consensus       172 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~  213 (261)
T 2xqy_G          172 SGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPAS  213 (261)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGG
T ss_pred             CceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCC
Confidence            321  00     111223568888888878 999999998543

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.30  E-value=1.4e-10  Score=78.68  Aligned_cols=131  Identities=14%  Similarity=0.129  Sum_probs=86.5

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEe----CcE----------------eeeeEEEEeeee------cCceeecCC
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRR----NFK----------------RLGRLHLAIPYT------SPEAQVDTP   73 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~----~~~----------------~~~~~~~~~~~~------~~~l~v~~~   73 (232)
                      |++..|.+|++++|.|.+....+..+.|.-    ...                ..+.|.|.....      .+.|+|+.+
T Consensus         6 P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~~g~y~C~~~c~~~~~~~~~~l~V~~~   85 (185)
T 1iam_A            6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWT   85 (185)
T ss_dssp             SSEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEEECSSSSSEEEEEEEEECSCBCCEEEEECSSCEEEEECEEEEEBC
T ss_pred             CCCcEEeCCCCEEEEEEccCCCCccceEEeeCCCccEeccCCceeEEEEEecCcCCEEEEEEECCCCceEEEEEEEEeCC
Confidence            677889999999999999764444466653    111                114555554211      778888887


Q ss_pred             cEEecCCCCceEeecCCcEEEEeeecc-CCCC--eEEEEeCCeeeCCCCcE-EeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         74 PVILNNSPQLSVAKEGQSVQLECHAEG-HPIP--TISWRRENNAILPNGQT-IFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        74 p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~--~~~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      |......+....+.+|+.++|.|.+.| .|..  .+.|++++..+...... ...+.++.+.....+|...|+|.+.+..
T Consensus        86 P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l  165 (185)
T 1iam_A           86 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDL  165 (185)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEEC
T ss_pred             CCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccCCCccccEEEEEeceeccCCCeEEEEEEecC
Confidence            776655555556889999999999988 5553  48999998876321100 0011246655555555559999999865


Q ss_pred             C
Q psy15206        150 G  150 (232)
Q Consensus       150 ~  150 (232)
                      +
T Consensus       166 ~  166 (185)
T 1iam_A          166 R  166 (185)
T ss_dssp             G
T ss_pred             c
Confidence            4

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=4.3e-12  Score=77.26  Aligned_cols=77  Identities=25%  Similarity=0.554  Sum_probs=59.8

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCC-CceeeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG-RGARRKIE  158 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-~~~~~~~~  158 (232)
                      .+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...     ....|.|.++..+|.|.|.|.+.|..+ ...+..+.
T Consensus        16 ~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~   90 (96)
T 2ens_A           16 EPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP-----PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVS   90 (96)
T ss_dssp             ESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC-----CCSEEEEESCCTTTCEEEECEECCSSCCCEECCCEE
T ss_pred             CCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC-----CCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEE
Confidence            344566789999999999999888999999998776543     246899999999999999999999543 32334444


Q ss_pred             EEE
Q psy15206        159 VKV  161 (232)
Q Consensus       159 l~v  161 (232)
                      +.|
T Consensus        91 v~V   93 (96)
T 2ens_A           91 ISI   93 (96)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=4.4e-12  Score=78.25  Aligned_cols=68  Identities=18%  Similarity=0.256  Sum_probs=55.3

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+.+..+..|+.+.|.|.+.+ |.+.+.|+|+|..+....+         ..|.+.++...|+|.|+|.|.
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVE   83 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECS
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEc
Confidence            3566767777788999999999999987 7789999999987754433         357777888899999999974

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.29  E-value=2.4e-11  Score=77.60  Aligned_cols=86  Identities=17%  Similarity=0.351  Sum_probs=64.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeC--------CCCcEEee-----CCeEEECCCCCCCCeEEEEEeE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL--------PNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~--------~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      .+....+.+|+++.|.|.+.+.+.+.+.|++.+..+.        ...++...     ..+|.|.+++.+|+|.|+|.+.
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   86 (124)
T 3rbg_A            7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHY   86 (124)
T ss_dssp             SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEE
Confidence            3455678899999999999998889999998665421        22222221     3589999999999999999999


Q ss_pred             eCCCCceeeEEEEEEEeccEE
Q psy15206        147 NGIGRGARRKIEVKVEFAPIV  167 (232)
Q Consensus       147 ~~~~~~~~~~~~l~v~~~p~~  167 (232)
                      +. +. ....+.|.|..+|..
T Consensus        87 n~-g~-~~~~~~l~V~~~P~~  105 (124)
T 3rbg_A           87 SD-SV-STKEVKVIVLATMKG  105 (124)
T ss_dssp             SS-SE-EEEEEEEEEECC---
T ss_pred             cC-CC-CcEEEEEEEEeCCCC
Confidence            98 54 667788888877753

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.29  E-value=4.6e-12  Score=80.06  Aligned_cols=70  Identities=23%  Similarity=0.377  Sum_probs=54.3

Q ss_pred             EeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC-------------eE-EEEE--eccccCCceE
Q psy15206        162 EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE-------------YH-SISN--FGTSEGTTGS  225 (232)
Q Consensus       162 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~-------------~~-~~~~--~~~~~~d~g~  225 (232)
                      ..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|+|+|..+....             .. .+.+  .++...|+|.
T Consensus         7 ~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~   86 (117)
T 2v9t_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (117)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEE
T ss_pred             cCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEE
Confidence            457888887888888999999999999999999999999998765321             11 1111  1446799999


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |.|.|.
T Consensus        87 Y~C~a~   92 (117)
T 2v9t_A           87 YVCVAR   92 (117)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999874

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=3.9e-12  Score=78.21  Aligned_cols=67  Identities=15%  Similarity=0.312  Sum_probs=54.3

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC----cEEe-eC---CeEEECCCCCCCCeEEEEEeEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG----QTIF-TG---STLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~----~~~~-~~---~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+....+.+|+.+.|.|.+.+.+ +.+.|++++..+....    ++.. ..   ..|.|.++..+|.|.|+|.+.+
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   88 (101)
T 2edk_A           14 PLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG   88 (101)
T ss_dssp             CCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEECSS
T ss_pred             cCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEEcC
Confidence            55667888999999999998887 8999999998876543    2222 22   3699999999999999999986

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.29  E-value=5e-12  Score=77.53  Aligned_cols=60  Identities=17%  Similarity=0.333  Sum_probs=50.1

Q ss_pred             ceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe----------EEEEEeccccCCceEEEEecC
Q psy15206        172 TRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY----------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ....+..|+.+.|.|.+.|.|.+.+.|+|+|..+....+          ..|.+.++...|+|.|+|.|.
T Consensus        16 ~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   85 (100)
T 3caf_A           16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE   85 (100)
T ss_dssp             CEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEE
T ss_pred             cEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEE
Confidence            356677899999999999999999999999988764321          267788889999999999873

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.29  E-value=6.7e-12  Score=81.65  Aligned_cols=71  Identities=17%  Similarity=0.230  Sum_probs=57.3

Q ss_pred             EEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC----------------------CCeEEEEEecc
Q psy15206        161 VEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN----------------------DEYHSISNFGT  218 (232)
Q Consensus       161 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~----------------------~~~~~~~~~~~  218 (232)
                      ...+|.+...+....+..|+++.|.|.+.|.|.+.+.|+++|..+..                      .....|.+.++
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   97 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL   97 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECSC
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECCC
Confidence            34688888888889999999999999999999999999997654321                      13457888889


Q ss_pred             ccCCceEEEEecC
Q psy15206        219 SEGTTGSLQCKVP  231 (232)
Q Consensus       219 ~~~d~g~Y~C~~~  231 (232)
                      ..+|+|.|.|.|.
T Consensus        98 ~~~D~G~Y~C~a~  110 (137)
T 3qr2_A           98 VEEDTGTYECRAS  110 (137)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcccCEEEEEEEE
Confidence            9999999999874

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=2.8e-12  Score=78.85  Aligned_cols=67  Identities=9%  Similarity=0.169  Sum_probs=55.0

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC-------------eEEEEEeccccCCceEEEEec
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE-------------YHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~-------------~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      +|.+...+.+..+..|+.+.|.|.+.+.| +.+.|+|+|..+....             ...|.+.++..+|+|.|+|.|
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   86 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT   86 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEEC
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEE
Confidence            45666667778889999999999999988 8999999997765443             235777788889999999987


Q ss_pred             C
Q psy15206        231 P  231 (232)
Q Consensus       231 ~  231 (232)
                      .
T Consensus        87 ~   87 (101)
T 2edk_A           87 N   87 (101)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.29  E-value=2.4e-12  Score=74.87  Aligned_cols=59  Identities=15%  Similarity=0.283  Sum_probs=47.9

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEecc-ccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT-SEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~-~~~d~g~Y~C~~~  231 (232)
                      |....+..|++++|.|.+.|.|.  |.|+|||..+..+..-.|.+.++ ..+|+|.|+|.|.
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~~~~~L~I~~v~~~~DsG~Y~C~A~   65 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTP   65 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTCCSSCCBCCSCCTTTTCSCEEEECS
T ss_pred             CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCCCCCEEEECccCccCcCEEEEEEEc
Confidence            34445678999999999999973  99999999987554456777784 6799999999984

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.28  E-value=5.9e-11  Score=80.94  Aligned_cols=119  Identities=14%  Similarity=0.224  Sum_probs=76.6

Q ss_pred             CcceEeecCCeEEEEEEec--CCCCCeEEEEe--CcEee----------------------------------eeEEEEe
Q psy15206         20 TQLSVAKEGQSVQLECHAE--GHPIPTISWRR--NFKRL----------------------------------GRLHLAI   61 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~--~~p~~~~~W~~--~~~~~----------------------------------~~~~~~~   61 (232)
                      +..+.+.+|++|+|.|...  +.+.+.|.|++  ++..+                                  |.|.|..
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~   85 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI   85 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence            4567899999999999653  24567999999  54322                                  2444443


Q ss_pred             eee--------cCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCC
Q psy15206         62 PYT--------SPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRI  133 (232)
Q Consensus        62 ~~~--------~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~  133 (232)
                      ...        .+.|.|..+.     ...... ..+..+.|.|.+.+.|.+.+.|++++..+ .     .....+.+.. 
T Consensus        86 ~n~~g~~~~~~~~~L~V~~~~-----~~P~i~-~~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~-----~~~~~i~~~~-  152 (182)
T 1hnf_A           86 YDTKGKNVLEKIFDLKIQERV-----SKPKIS-WTCINTTLTCEVMNGTDPELNLYQDGKHL-K-----LSQRVITHKW-  152 (182)
T ss_dssp             EETTSCEEEEEEEEEEEECCC-----CCCEEE-EETTTTEEEEECSSCSSCEEEEEESSCEE-E-----EESSCEEEEC-
T ss_pred             EeCCCceeEEEEEEEEEcCcC-----CCCEEE-EccCcEEEEeEccCCCCCEEEEEECCEEC-C-----CCCcEEEEec-
Confidence            211        2234443210     011111 13447899999998888899999999876 1     1233444433 


Q ss_pred             CCCCCeEEEEEeEeCCCC
Q psy15206        134 TKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~~~~  151 (232)
                      ...|.|.|+|.+.|..+.
T Consensus       153 ~~~d~G~Y~C~a~N~~~~  170 (182)
T 1hnf_A          153 TTSLSAKFKCTAGNKVSK  170 (182)
T ss_dssp             CSCEEEEEEEEEECSSCE
T ss_pred             ccCCCcEEEEEEEeCCCC
Confidence            478999999999998776

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.7e-11  Score=75.66  Aligned_cols=76  Identities=16%  Similarity=0.318  Sum_probs=59.7

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      ..+.+|+.+.|.|.+.+.+.+ +.|++++..+....+....    ...|.|.++..+|.|.|+|.+.|..+     .+.+
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~-----~~~l   93 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA-----FFGV   93 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC-----CEEE
T ss_pred             EEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE-----EEEE
Confidence            677899999999999998888 9999999887654443322    23699999999999999999988633     4566


Q ss_pred             EEEecc
Q psy15206        160 KVEFAP  165 (232)
Q Consensus       160 ~v~~~p  165 (232)
                      .|..+|
T Consensus        94 ~V~~~P   99 (104)
T 2e6p_A           94 TVQDPS   99 (104)
T ss_dssp             EEECCC
T ss_pred             EEcCCC
Confidence            666555

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=6.5e-12  Score=77.63  Aligned_cols=67  Identities=18%  Similarity=0.392  Sum_probs=54.2

Q ss_pred             ccEEEeccce---eeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC---------CeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTR---IGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND---------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~---~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+..   ..+..|+.+.|.|.+.+.|.+ +.|+|+|..+...         ....|.+.++..+|+|.|+|.+.
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRTE   85 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEECS
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEEC
Confidence            4555555555   678899999999999999988 9999999887643         33567778888999999999874

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.28  E-value=2.6e-11  Score=75.73  Aligned_cols=70  Identities=19%  Similarity=0.280  Sum_probs=57.3

Q ss_pred             EeccEEEeccceeeeeccCeEEEEEEeecCC--CCeEEEeeCCEEecCCC-----------------eEEEEEeccccCC
Q psy15206        162 EFAPIVTVQSTRIGQALHHDMDLDCHIEAYP--HPILYWAKDGEIVVNDE-----------------YHSISNFGTSEGT  222 (232)
Q Consensus       162 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~g~~~~~~~-----------------~~~~~~~~~~~~d  222 (232)
                      ..+|.+...+....+..|+++.|.|.+.+.+  .+.+.|+|+|..+....                 ...|.+.++...|
T Consensus         8 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   87 (112)
T 3so5_A            8 FPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS   87 (112)
T ss_dssp             CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred             CCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence            3567788888888889999999999998654  57899999998775432                 3578888899999


Q ss_pred             ceEEEEecC
Q psy15206        223 TGSLQCKVP  231 (232)
Q Consensus       223 ~g~Y~C~~~  231 (232)
                      +|.|.|.|.
T Consensus        88 ~G~Y~C~a~   96 (112)
T 3so5_A           88 EGXYQCVIS   96 (112)
T ss_dssp             CEEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999999874

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.28  E-value=6e-12  Score=77.65  Aligned_cols=64  Identities=17%  Similarity=0.302  Sum_probs=52.3

Q ss_pred             EEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC--e---------EEEEEeccccCCceEEEEecC
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE--Y---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~--~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +...+.+..+..|+++.|.|.+.+ |.+.+.|+|+|..+....  +         ..|.+.++..+|+|.|+|.|.
T Consensus        10 ~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   84 (103)
T 1x44_A           10 VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTT   84 (103)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEET
T ss_pred             eeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEEC
Confidence            455566778889999999999977 678999999998876554  2         456677888899999999874

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.28  E-value=1.9e-11  Score=86.63  Aligned_cols=62  Identities=19%  Similarity=0.329  Sum_probs=42.5

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEe-CCeeeCCCC--------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRR-ENNAILPNG--------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~-~~~~~~~~~--------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .|+.+.|.|.+.+. |. +.+.|++ +|..+....        ......+.|.|..... + |.|+|.+.|....
T Consensus       144 ~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          144 LHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             HHSCEEEEEEEEEESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             cCCcceEEEEEeeecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            47889999999885 64 5899999 766543211        1111124688887775 4 8999999987543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.27  E-value=4.7e-11  Score=85.05  Aligned_cols=129  Identities=19%  Similarity=0.236  Sum_probs=78.4

Q ss_pred             CcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe--------------------e-------------------------
Q psy15206         20 TQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR--------------------L-------------------------   54 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~--------------------~-------------------------   54 (232)
                      |.++.+.+|++++|.|.+.. +.+.+.|+|+...                    .                         
T Consensus         6 p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~   84 (238)
T 1bec_A            6 PRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQT   84 (238)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGC
T ss_pred             CCeeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccC
Confidence            67788999999999999964 6789999984200                    0                         


Q ss_pred             eeEEEEeeee-----------cCceeecC------CcEEecCCCCceEeecCCcEEEEeeeccC-CCC-eEEEEeCCeee
Q psy15206         55 GRLHLAIPYT-----------SPEAQVDT------PPVILNNSPQLSVAKEGQSVQLECHAEGH-PIP-TISWRRENNAI  115 (232)
Q Consensus        55 ~~~~~~~~~~-----------~~~l~v~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~  115 (232)
                      |.|.|.....           ...|.|..      +|.+....+....+..|+.+.|.|.+.|. |.+ .+.|+++|..+
T Consensus        85 G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~  164 (238)
T 1bec_A           85 SVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEV  164 (238)
T ss_dssp             EEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEETTEEE
T ss_pred             EEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEECCEEC
Confidence            2344433211           12344433      33333222222234468999999999885 644 89999999876


Q ss_pred             CCCCc-----EEeeCCe------EEECCCCCCC-CeEEEEEeEeCC
Q psy15206        116 LPNGQ-----TIFTGST------LQIPRITKED-RGAYYCVAQNGI  149 (232)
Q Consensus       116 ~~~~~-----~~~~~~~------l~i~~~~~~~-~g~y~C~~~~~~  149 (232)
                      .....     ....++.      |.|......| .|.|+|.+.|..
T Consensus       165 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          165 HSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             CTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred             CCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence            54321     1112332      3333333333 578999999864

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.27  E-value=1.5e-11  Score=88.54  Aligned_cols=63  Identities=19%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             eecCCcEEEEeeeccC-CCC-eEEEEeCCeeeCCC--------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         86 AKEGQSVQLECHAEGH-PIP-TISWRRENNAILPN--------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +..|+.+.|.|.+.+. |.+ .+.|++++..+...        .......+.|.|.++...| |.|+|.+.|..
T Consensus       145 ~~~g~~v~L~C~~~g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~  217 (257)
T 3bn9_D          145 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP  217 (257)
T ss_dssp             --------CCCEEEEEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGG
T ss_pred             ccCCCcEEEEEEEeeEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecC
Confidence            4578899999999885 766 89999988653110        0011112356777777777 99999999954

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=99.27  E-value=7.2e-11  Score=94.19  Aligned_cols=146  Identities=13%  Similarity=0.141  Sum_probs=93.3

Q ss_pred             eecCCcEEEEeeeccCCC----CeEEEEeCCeeeCCCC---------cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC-
Q psy15206         86 AKEGQSVQLECHAEGHPI----PTISWRRENNAILPNG---------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR-  151 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~~~----~~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-  151 (232)
                      +..+....|.|.+.+..+    ..+.|++++..+....         ......+.|.|......+.+.|+|.+.+.... 
T Consensus       355 ~~~~~~~~l~C~~~~~~p~~~~i~v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~~~~~~y~C~v~~~~~~~  434 (551)
T 1ntl_A          355 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA  434 (551)
T ss_pred             eeeccCcceEEEEEecccCCCceEEEEEECCccccccccCCceECCCCeEEEEEeeEcCHHHccCCceEEEEEecCCCCC
Confidence            445778999999988544    4799999987653211         11112345777777777888999999986542 


Q ss_pred             ceeeEEEEE--EEeccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec----------CCCeEEEE---
Q psy15206        152 GARRKIEVK--VEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV----------NDEYHSIS---  214 (232)
Q Consensus       152 ~~~~~~~l~--v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~----------~~~~~~~~---  214 (232)
                      ...+.+.+.  ...+|.+.+.+.......|+.++|.|.+.|+.++  .|.|+|||..+.          .+..|.+.   
T Consensus       435 ~~~~~~~~~~~~~~~P~V~~~~~~~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~l  514 (551)
T 1ntl_A          435 PIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNGSYFVYSKL  514 (551)
T ss_pred             CeEEEEecCCCCCcCCceEEeCCChhhccCCceEEEEEEEEeECCCCEEEEEECCEEccCceeccceeCCCCCEEEEEEE
Confidence            223333333  3356776555433334578899999999996544  799999998753          12233332   


Q ss_pred             -EeccccCCceEEEEecC
Q psy15206        215 -NFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       215 -~~~~~~~d~g~Y~C~~~  231 (232)
                       +......+.+.|+|.|.
T Consensus       515 ~v~~~~~~~~~~ytC~V~  532 (551)
T 1ntl_A          515 NVQKSNWEAGNTFTCSVL  532 (551)
T ss_pred             EEcHHHcCCCCeEEEEEE
Confidence             12222235789999983

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.27  E-value=3.9e-11  Score=96.37  Aligned_cols=131  Identities=21%  Similarity=0.329  Sum_probs=86.9

Q ss_pred             CcceEeecCCeEEEEEEe-cCCCCCeEEEEeCcE------------------------------------eeeeEEEEee
Q psy15206         20 TQLSVAKEGQSVQLECHA-EGHPIPTISWRRNFK------------------------------------RLGRLHLAIP   62 (232)
Q Consensus        20 ~~~~~~~~G~~v~l~C~~-~~~p~~~~~W~~~~~------------------------------------~~~~~~~~~~   62 (232)
                      .....+.+|++++|.|.+ .+.|.+.+.|++++.                                    +.|.|.|...
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~  452 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAM  452 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEE
Confidence            456778999999999999 678889999999542                                    1146777652


Q ss_pred             e-------ecCceeecCCcEEecCCCCceEeecCCc-EEEEeeecc-CCCCeEEEEeCCeeeCCCCc-EEe---------
Q psy15206         63 Y-------TSPEAQVDTPPVILNNSPQLSVAKEGQS-VQLECHAEG-HPIPTISWRRENNAILPNGQ-TIF---------  123 (232)
Q Consensus        63 ~-------~~~~l~v~~~p~~~~~~~~~~~~~~g~~-~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~-~~~---------  123 (232)
                      .       ..+.|.|..+|...........+..+.. +.|.|.+.+ .|.+.+.|++++..+..... ...         
T Consensus       453 n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~  532 (581)
T 3o3u_N          453 NRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPE  532 (581)
T ss_dssp             CTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTT
T ss_pred             cCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCC
Confidence            2       2456666553321111111122445554 467999988 58899999999988754221 111         


Q ss_pred             -----eCCeEEECCCC-CCCCeEEEEEeEeCCC
Q psy15206        124 -----TGSTLQIPRIT-KEDRGAYYCVAQNGIG  150 (232)
Q Consensus       124 -----~~~~l~i~~~~-~~~~g~y~C~~~~~~~  150 (232)
                           ..+.|.|..+. .++.|.|+|.+.|...
T Consensus       533 ~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~  565 (581)
T 3o3u_N          533 TGLFTLQSELMVTPARGGDPRPTFSCSFSPGLP  565 (581)
T ss_dssp             TCCEEEEEEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred             CceEEEEEEEEEEeccccCCCceEEEEEeccCC
Confidence                 12468899988 5557899999998754

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.27  E-value=9.6e-12  Score=77.43  Aligned_cols=68  Identities=12%  Similarity=0.228  Sum_probs=52.7

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCC---CeEEEeeCCEEecC------------------CCeEEEEEeccccCC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPH---PILYWAKDGEIVVN------------------DEYHSISNFGTSEGT  222 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~~~W~~~g~~~~~------------------~~~~~~~~~~~~~~d  222 (232)
                      .|.+...|....+..|++++|.|.+.|.|.   +.+.|+|++.....                  .....|.+.++...|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            355556677788999999999999999998   89999998722110                  024678888999999


Q ss_pred             ceEEEEecC
Q psy15206        223 TGSLQCKVP  231 (232)
Q Consensus       223 ~g~Y~C~~~  231 (232)
                      +|.|.|.|.
T Consensus        84 ~G~Y~C~a~   92 (108)
T 3cx2_A           84 TGSYRCEVS   92 (108)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEEe
Confidence            999999874

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.9e-12  Score=80.77  Aligned_cols=72  Identities=13%  Similarity=0.137  Sum_probs=57.9

Q ss_pred             EEEEecc-EEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC----------eEEEEEeccccCCceEEE
Q psy15206        159 VKVEFAP-IVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE----------YHSISNFGTSEGTTGSLQ  227 (232)
Q Consensus       159 l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~~d~g~Y~  227 (232)
                      |.|..+| .+...+.+..+.+|+++.|.|.+.+.|.|.+.|+|+|..+..+.          ...|.+.++...|+|.|+
T Consensus         7 l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (115)
T 2cr6_A            7 GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIY   86 (115)
T ss_dssp             CCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEE
T ss_pred             EEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEE
Confidence            3444444 56667788889999999999999999999999999998775432          345777888899999999


Q ss_pred             Eec
Q psy15206        228 CKV  230 (232)
Q Consensus       228 C~~  230 (232)
                      |.+
T Consensus        87 C~~   89 (115)
T 2cr6_A           87 FEA   89 (115)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.27  E-value=7.2e-12  Score=76.09  Aligned_cols=65  Identities=9%  Similarity=0.151  Sum_probs=52.7

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEec
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      +.+...+.+..+..|+.+.|.|.+ +.|.+.+.|+|+|..+..+.         ...|.+.++...|+|.|.|.|
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence            344455667788999999999999 88888999999998776443         345777788889999999987

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.26  E-value=4.5e-11  Score=81.71  Aligned_cols=136  Identities=11%  Similarity=0.106  Sum_probs=85.8

Q ss_pred             eeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeC----cEe----------------eeeEEEEeeee------cCc
Q psy15206         14 VILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRN----FKR----------------LGRLHLAIPYT------SPE   67 (232)
Q Consensus        14 ~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~----~~~----------------~~~~~~~~~~~------~~~   67 (232)
                      .+... |.+..|.+|++++|.|.+....+..+.|.-.    ...                .+.|.|.....      .+.
T Consensus         4 ~v~v~-P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~g~~~~~~~ls~vs~d~~~~~C~~~c~~~~~~~~v~   82 (196)
T 3bn3_B            4 WADLQ-PRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGL   82 (196)
T ss_dssp             CEEEE-SSEEEEETTEEEEEEEEECCSSCSEEEEECSSEEEEEEEETTEEEEEEEEECSSEECCEEEEEETTEEEEEECE
T ss_pred             EEEEc-CCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCCeeEccccCceEEEEEEEccCCCceEEEEECCCCceEEEEE
Confidence            44555 7778899999999999997533436676431    111                11255554221      778


Q ss_pred             eeecCCcEEecCCCCceEeecCCcEEEEeeecc-CCCCe--EEEEeCCeeeCCCC---cE---EeeCCeEEECCCCCCCC
Q psy15206         68 AQVDTPPVILNNSPQLSVAKEGQSVQLECHAEG-HPIPT--ISWRRENNAILPNG---QT---IFTGSTLQIPRITKEDR  138 (232)
Q Consensus        68 l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~--~~W~~~~~~~~~~~---~~---~~~~~~l~i~~~~~~~~  138 (232)
                      |.|+.+|......+....+.+|+.++|.|.+.+ .|...  +.|++++..+....   ..   ......+.+.....++.
T Consensus        83 l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~~r~D~g  162 (196)
T 3bn3_B           83 IRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHG  162 (196)
T ss_dssp             EEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEECCGGGTT
T ss_pred             EEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEeeeeccCC
Confidence            888887765443444334779999999999987 45444  79999987763111   00   00113455555555555


Q ss_pred             eEEEEEeEeCCC
Q psy15206        139 GAYYCVAQNGIG  150 (232)
Q Consensus       139 g~y~C~~~~~~~  150 (232)
                      ..|+|.+.+..+
T Consensus       163 ~~~sC~A~l~l~  174 (196)
T 3bn3_B          163 ANFSCRAELDLR  174 (196)
T ss_dssp             CEEEEEEEEECG
T ss_pred             CeEEEEEEccCC
Confidence            599999998654

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.26  E-value=1.5e-11  Score=75.35  Aligned_cols=66  Identities=6%  Similarity=0.003  Sum_probs=52.4

Q ss_pred             ccEEEeccce-eeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEec
Q psy15206        164 APIVTVQSTR-IGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       164 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      +|.+...+.+ ..+..|+++.|.|.+. .|.+.+.|+|+|..+....         ...|.+.++..+|+|.|.|.|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA   82 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE
Confidence            5666655555 5677999999999998 6888999999998765433         345777788889999999986

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.26  E-value=7e-12  Score=77.77  Aligned_cols=67  Identities=12%  Similarity=0.121  Sum_probs=55.7

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC---------eEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE---------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+.+..+..|+.+.|.|.+.+.|.+ +.|+|+|..+....         ...|.+.++..+|+|.|+|.|.
T Consensus         8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (106)
T 2dlt_A            8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPD   83 (106)
T ss_dssp             CCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEE
T ss_pred             CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEc
Confidence            5667777888889999999999999998877 99999998765433         3467777888899999999874

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.26  E-value=2.6e-11  Score=72.82  Aligned_cols=63  Identities=21%  Similarity=0.480  Sum_probs=50.4

Q ss_pred             EeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee--C--CeEEECCCCCCCCeEEEEEeEeC
Q psy15206         85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT--G--STLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      ...+|+.+.|.|.+.+ |.+.+.|+++|..+....+....  +  ..|.|.++..+|+|.|+|.+.|.
T Consensus        17 ~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           17 HAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             ECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            3457999999999865 77889999999988665543322  2  36999999999999999998653

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.26  E-value=9.4e-11  Score=82.11  Aligned_cols=138  Identities=21%  Similarity=0.242  Sum_probs=87.1

Q ss_pred             ccCCCeeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEee-----------------------------eeEEE
Q psy15206          9 VDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL-----------------------------GRLHL   59 (232)
Q Consensus         9 ~~~~P~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~-----------------------------~~~~~   59 (232)
                      ...+|.|. . +.++.+.+|++++|.|.+.+.|.+.+.|++++..+                             |.|.|
T Consensus        16 ~~~~P~~~-~-p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   93 (215)
T 3mtr_A           16 HMYAPKLQ-G-PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNC   93 (215)
T ss_dssp             CCEEEEEE-C-CSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEE
T ss_pred             eecCCccc-C-CceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEE
Confidence            45688884 5 66788999999999999999999999999965433                             23444


Q ss_pred             Eeeee------cCceeecCCcEEecCCCCce-EeecCCcEEEEeeecc----CCCC--eEEEEeCCeeeCCCCcEEe---
Q psy15206         60 AIPYT------SPEAQVDTPPVILNNSPQLS-VAKEGQSVQLECHAEG----HPIP--TISWRRENNAILPNGQTIF---  123 (232)
Q Consensus        60 ~~~~~------~~~l~v~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~----~~~~--~~~W~~~~~~~~~~~~~~~---  123 (232)
                      .....      .+.|.+..+|..    +... ....+..+.+.|....    .+..  .+.|.+++...-.......   
T Consensus        94 ~a~n~~g~~~~~~~l~v~~~P~~----p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~  169 (215)
T 3mtr_A           94 TAVNRIGQESLEFILVQADTPSS----PSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA  169 (215)
T ss_dssp             EEECSSCEEEEEEEEEECCCCCC----CEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHH
T ss_pred             EEEECCCceEEEEEEEECCCCCC----CcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccc
Confidence            33111      334444433321    1111 1234667888886422    2322  3778877643211000011   


Q ss_pred             -eCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206        124 -TGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus       124 -~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                       ....+.|.++...+.+.|.|.+.|..|..
T Consensus       170 ~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s  199 (215)
T 3mtr_A          170 SMEGIVTIVGLKPETTYAVRLAALNGKGLG  199 (215)
T ss_dssp             HHHTEEEEECCCTTCEEEEEEEEEESSCBC
T ss_pred             cccccEEECCCCCCCEEEEEEEEEeCCccc
Confidence             12679999999999999999999988763

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.25  E-value=1.7e-11  Score=75.59  Aligned_cols=55  Identities=16%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             eccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeE----------E----EEEeccccCCceEEEEecC
Q psy15206        177 ALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH----------S----ISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~----------~----~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..++.+.|.|.+.|.|.|.+.|+|+|..+..+.+.          .    |.+.++..+|+|.|+|.|.
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   82 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAK   82 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEE
Confidence            45788999999999999999999999988765432          1    7777888899999999874

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.25  E-value=1e-10  Score=78.98  Aligned_cols=117  Identities=11%  Similarity=0.125  Sum_probs=73.2

Q ss_pred             cceEeecCCeEEEEEEecCCCCCeEEEEeCcEeee-------------------------------------eEEEEee-
Q psy15206         21 QLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLG-------------------------------------RLHLAIP-   62 (232)
Q Consensus        21 ~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~~-------------------------------------~~~~~~~-   62 (232)
                      ..+.+.+|++|+|.|.+.. |.+.|.|+++...+.                                     .|.|... 
T Consensus         3 ~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n   81 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (171)
T ss_dssp             EEEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             cEEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence            4678999999999999955 888999999654221                                     1222110 


Q ss_pred             ---eecCceeecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCe
Q psy15206         63 ---YTSPEAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRG  139 (232)
Q Consensus        63 ---~~~~~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g  139 (232)
                         ...+.|.|..++.     ....... .....|.|.+.+.|.+.+.|++++..+...     ....+.+.  ...|.|
T Consensus        82 ~~~~~~~~L~V~~~~~-----~p~i~~~-~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~-----~~~~l~~~--~~~~~g  148 (171)
T 1ccz_A           82 ITDTMKFFLYVLEMVS-----KPMIYWE-CSNATLTCEVLEGTDVELKLYQGKEHLRSL-----RQKTMSYQ--WTNLRA  148 (171)
T ss_dssp             CCSCEEEEEEEECCCC-----CCEEEEE-TTTTEEEEECSSCSSCEEEEEETTEEEEEE-----SSSEEEEE--CSCCSS
T ss_pred             CCCcEEEEEEEECcCC-----CCEEEEe-cCCcEEEEEeCCCCCcEEEEEECCEECcCC-----cceEEEEe--ccCCCc
Confidence               0023344433211     0111111 112379999998888999999998776421     12234333  367889


Q ss_pred             EEEEEeEeCCCC
Q psy15206        140 AYYCVAQNGIGR  151 (232)
Q Consensus       140 ~y~C~~~~~~~~  151 (232)
                      .|+|.+.|..+.
T Consensus       149 ~Y~C~a~N~~~~  160 (171)
T 1ccz_A          149 PFKCKAVNRVSQ  160 (171)
T ss_dssp             CEEEEEEETTEE
T ss_pred             eEEEEEEcccCc
Confidence            999999998765

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.25  E-value=7.7e-12  Score=78.53  Aligned_cols=74  Identities=14%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             eEEEEEEEe-ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCce
Q psy15206        155 RKIEVKVEF-APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTG  224 (232)
Q Consensus       155 ~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g  224 (232)
                      ....|.|.. +|.+...+.+..+..|+++.|.|.+.+.  |.+.|+|+|..+..+.+         ..|.+.++..+|+|
T Consensus         9 ~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G   86 (113)
T 2edh_A            9 TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAG   86 (113)
T ss_dssp             CCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCE
T ss_pred             EEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCE
Confidence            344555664 4577777778889999999999999775  68999999987764433         35777788889999


Q ss_pred             EEEEec
Q psy15206        225 SLQCKV  230 (232)
Q Consensus       225 ~Y~C~~  230 (232)
                      .|.|.|
T Consensus        87 ~Y~C~a   92 (113)
T 2edh_A           87 EYLCMC   92 (113)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999986

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=3e-12  Score=81.09  Aligned_cols=69  Identities=23%  Similarity=0.385  Sum_probs=55.9

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC-CCeE------EEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN-DEYH------SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-~~~~------~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|+|..+.. ..++      .|.+.++..+|+|.|+|.|.
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEE
Confidence            356666677778889999999999999999999999999877653 2222      46677888899999999874

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.25  E-value=5e-11  Score=73.43  Aligned_cols=81  Identities=21%  Similarity=0.384  Sum_probs=61.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe-eCC---eEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-TGS---TLQIPRITKEDRGAYYCVAQNGIGRGARR  155 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~---~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  155 (232)
                      .+....+.+|+.+.|.|.+.+.+.+ +.|++++..+....++.. .++   .|.|.++..+|.|.|+|.+    +. ...
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~----g~-~~~   87 (103)
T 2e7b_A           14 ALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSF----GD-QTT   87 (103)
T ss_dssp             CCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEEC----SS-CBC
T ss_pred             cCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEEE----CC-cEE
Confidence            4566788899999999999998888 999999987755444433 233   5999999999999999983    22 334


Q ss_pred             EEEEEEEeccE
Q psy15206        156 KIEVKVEFAPI  166 (232)
Q Consensus       156 ~~~l~v~~~p~  166 (232)
                      .+.|.|..+|.
T Consensus        88 ~~~l~V~~~p~   98 (103)
T 2e7b_A           88 SATLTVTALPS   98 (103)
T ss_dssp             CBCEEEECCCC
T ss_pred             EEEEEEEeccc
Confidence            45666666553

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.25  E-value=1.3e-11  Score=76.22  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=52.1

Q ss_pred             ccEEEeccce-eeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-Ce---------EEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTR-IGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-EY---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~-~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-~~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+.+ ..+..|+++.|.|.+ +.|.+.+.|+|+|..+..+ .+         ..|.+.++..+|+|.|.|.|.
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   92 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   92 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEEC
Confidence            4444444333 678899999999999 7888899999999877654 32         366777888899999999873

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.25  E-value=5.9e-11  Score=85.29  Aligned_cols=135  Identities=21%  Similarity=0.241  Sum_probs=80.6

Q ss_pred             eeecCCCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEe--------------------e-------------------
Q psy15206         14 VILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKR--------------------L-------------------   54 (232)
Q Consensus        14 ~i~~~~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~--------------------~-------------------   54 (232)
                      .++.. +.++.+.+|++++|.|.+.. +.+.+.|+|+...                    .                   
T Consensus         5 ~v~q~-p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~   82 (252)
T 1oga_E            5 GITQS-PKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTS   82 (252)
T ss_dssp             CEECS-CSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECS
T ss_pred             cceEc-CCeEEEcCCCcEEEEEEeCC-CCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECc
Confidence            34444 77889999999999999964 5789999983200                    0                   


Q ss_pred             ------eeEEEEeeee---------cCceeec------CCcEEecCCCCceEeecCCcEEEEeeeccC-CC-CeEEEEeC
Q psy15206         55 ------GRLHLAIPYT---------SPEAQVD------TPPVILNNSPQLSVAKEGQSVQLECHAEGH-PI-PTISWRRE  111 (232)
Q Consensus        55 ------~~~~~~~~~~---------~~~l~v~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~~W~~~  111 (232)
                            |.|.|.....         ...|.|.      .+|.+....+....+..|+.+.|.|.+.+. |. +.+.|+++
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~  162 (252)
T 1oga_E           83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN  162 (252)
T ss_dssp             CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred             CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence                  2334433210         1223332      123322211222223358899999999884 65 48999999


Q ss_pred             CeeeCCCCcE---------------EeeCCeEEECCCCCC-CCeEEEEEeEeCCC
Q psy15206        112 NNAILPNGQT---------------IFTGSTLQIPRITKE-DRGAYYCVAQNGIG  150 (232)
Q Consensus       112 ~~~~~~~~~~---------------~~~~~~l~i~~~~~~-~~g~y~C~~~~~~~  150 (232)
                      |..+......               ....+.|.|...... +.|.|+|.+.|...
T Consensus       163 g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  217 (252)
T 1oga_E          163 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL  217 (252)
T ss_dssp             TEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCB
T ss_pred             CEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            9876432111               011123666665553 56789999999653

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.25  E-value=8.2e-12  Score=79.13  Aligned_cols=67  Identities=12%  Similarity=0.234  Sum_probs=52.2

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecC---CCCeEEEeeCC---------EE--ecCC-------CeEEEEEeccccCCc
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAY---PHPILYWAKDG---------EI--VVND-------EYHSISNFGTSEGTT  223 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~~~W~~~g---------~~--~~~~-------~~~~~~~~~~~~~d~  223 (232)
                      |.+...|.+..+.+|++++|.|.+.+.   |.|.|.|+|++         ..  +...       ..+.|.+.+++..|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            345566788889999999999999775   88999999973         11  1100       147888999999999


Q ss_pred             eEEEEecC
Q psy15206        224 GSLQCKVP  231 (232)
Q Consensus       224 g~Y~C~~~  231 (232)
                      |+|+|+|+
T Consensus        88 G~Y~Cevs   95 (126)
T 2dav_A           88 GNYRCEVT   95 (126)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	5e-16
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	1e-06
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	3e-15
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	5e-07
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-15
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-06
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-14
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-04
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-13
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-13
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-12
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-12
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.001
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	2e-12
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	6e-12
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	8e-05
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-11
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.002
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-11
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.003
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-10
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-10
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.002
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-10
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	3e-10
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	0.004
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	5e-10
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	5e-10
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-09
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	5e-04
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	2e-09
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	5e-05
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	4e-09
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-09
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	6e-09
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	7e-09
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	1e-08
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	3e-08
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	3e-08
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	4e-08
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	5e-08
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	6e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	9e-08
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	1e-07
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-07
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-07
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	4e-07
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	5e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	6e-07
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	6e-07
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	8e-07
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	1e-06
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-06
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	3e-06
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	3e-06
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	4e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	5e-06
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	7e-06
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	7e-06
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	9e-06
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	1e-05
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	2e-05
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	2e-05
d2nxyb1	97	b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho	3e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	4e-05
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	1e-04
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	1e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-04
d1fltx_	95	b.1.1.4 (X:) Second domain of the Flt-1 receptor {	3e-04
d2aq2a1	110	b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (	3e-04
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	3e-04
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	4e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	5e-04
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	0.002
d1nfde1	108	b.1.1.1 (E:2-107) Immunoglobulin light chain lambd	0.003
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.003
d1mqkl_	109	b.1.1.1 (L:) Immunoglobulin light chain kappa vari	0.003
d1fo0b_	112	b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus m	0.004

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 68.6 bits (167), Expect = 5e-16
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIP 131
           + P       ++ V K+GQ V + C   G P P + W   N   L  G+   T S L I 
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH-NAKPLSGGRATVTDSGLVIK 59

Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
            +   D+G Y C A N  G     +  V+V
Sbjct: 60  GVKNGDKGYYGCRATNEHGD-KYFETLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.2 bits (101), Expect = 1e-06
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 11 TPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK 52
          + P       ++ V K+GQ V + C   G P P + W  N K
Sbjct: 1  SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAK 42

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 3e-15
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 6/87 (6%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-----QTIFTGSTLQIPRIT 134
             +L       +V+  C A G+P+PT+ W +              +      +L +  + 
Sbjct: 11  EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV 70

Query: 135 KEDRGAYYCVAQNGIGRGARRKIEVKV 161
             D+G Y CV +N  G        + V
Sbjct: 71  PSDKGNYTCVVENEYGS-INHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 5e-07
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 21 QLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL 54
          +L       +V+  C A G+P+PT+ W +N K  
Sbjct: 13 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 46

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.0 bits (160), Expect = 5e-15
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR 132
            P I    P  + A  GQ V LEC A G+P+P I WR+ + +      +      L I  
Sbjct: 4   APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSE--PLLHIQN 61

Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
           +  ED G Y C A+N  GR    +  + + 
Sbjct: 62  VDFEDEGTYECEAENIKGR-DTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.7 bits (97), Expect = 4e-06
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNF 51
           P I       + A  GQ V LEC A G+P+P I WR+  
Sbjct: 4  APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLD 43

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 6e-14
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQ 129
           P I+   P+    + G+SV+L     G    T +W +    I  +          GS L 
Sbjct: 1   PQIIQ-FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 59

Query: 130 IPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
           I    +E  G Y  + +N +G   + ++ + V   P
Sbjct: 60  ILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVDKP 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 13 PVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL 54
          P I+       V + G+SV+L     G    T +W +  K++
Sbjct: 1  PQIIQFPEDQKV-RAGESVELFGKVTGTQPITCTWMKFRKQI 41

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 62.2 bits (150), Expect = 2e-13
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 8/96 (8%)

Query: 73  PPVIL-NNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ------TIFTG 125
           PP +    S   + A  GQSV L C A+G P PT+SW ++   I    +           
Sbjct: 3   PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62

Query: 126 STLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
           S L I  + K D   Y C+A+N  G      I +KV
Sbjct: 63  SELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLKV 97

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 62.3 bits (150), Expect = 2e-13
 Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 18/106 (16%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA----ILPNGQTIFT---- 124
            P++    P  +    G  V+  C       P I W +          P+G         
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 125 ---------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
                       L I  +T ED G Y C+A N IG  +     + V
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI-SFHSAWLTV 108

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (143), Expect = 1e-12
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 3/91 (3%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQIP 131
           P ++     +    + G  V   C A+   P  T+ W R +N  LP+    F G  L I 
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG-ILTIR 59

Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
            +   D G Y C   N      +    + V+
Sbjct: 60  NVQPSDAGTYVCTGSNMFAM-DQGTATLHVQ 89

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.5 bits (143), Expect = 2e-12
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 1/82 (1%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGA 140
              + A  G  ++  C A G P P + W R+   +    +   +G  L+  ++  ED G 
Sbjct: 8   ITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGM 67

Query: 141 YYCVAQNGIGRGARRKIEVKVE 162
           Y CVA+N  G       E+ V+
Sbjct: 68  YQCVAENKHGT-VYASAELTVQ 88

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.8 bits (79), Expect = 0.001
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRNF 51
           A  G  ++  C A G P P + W R+ 
Sbjct: 12 EADIGSDLRWSCVASGKPRPAVRWLRDG 39

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 2e-12
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 6/89 (6%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT------IFTGSTLQIPRI 133
           +P      +GQ V+L C  EG   P I W ++   +    Q             L +  +
Sbjct: 2   APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV 61

Query: 134 TKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
            + D G Y+C  ++G      + + + VE
Sbjct: 62  ERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 58.0 bits (139), Expect = 6e-12
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------GSTLQIPRITKEDR 138
           +AK G    + C    +P+   ++ +    +  N +   T      G  L       ED 
Sbjct: 14  MAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDE 73

Query: 139 GAYYCVAQNGIGRGARRKIEVKV 161
           G Y C   NG+G+  +  +++ V
Sbjct: 74  GVYTCEVDNGVGKPQKHSLKLTV 96

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.3 bits (88), Expect = 8e-05
 Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 10 DTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK 52
          +  P  ++      +AK G    + C    +P+   ++ +N K
Sbjct: 3  EPVPQYVSKDM---MAKAGDVTMIYCMYGSNPMGYPNYFKNGK 42

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 1e-11
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS----TLQIPRITKE 136
           P+     EG+S +  C  +G P+PT++W R+   +  + +   T +    T +I  +   
Sbjct: 6   PRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQAS 65

Query: 137 DRGAYYCVAQNGIGRGARRKIEVKVE 162
           D G Y  V +N  G+    +  + ++
Sbjct: 66  DEGNYSVVVENSEGK-QEAEFTLTIQ 90

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRNF 51
             EG+S +  C  +G P+PT++W R  
Sbjct: 10 TVYEGESARFSCDTDGEPVPTVTWLRKG 37

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.5 bits (135), Expect = 2e-11
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 79  NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQIPRITK 135
           N+P     KEG+   + C       PTI W+ +   ++        + + + LQI  I K
Sbjct: 6   NAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKK 65

Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKV 161
            D G Y C  +  + RG     +++V
Sbjct: 66  TDEGTYRCEGRI-LARGEINFKDIQV 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 33.7 bits (76), Expect = 0.003
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 25 AKEGQSVQLECHAEGHPIPTISWRRNFK 52
           KEG+   + C       PTI W+   +
Sbjct: 13 FKEGEDAVIVCDVVSSLPPTIIWKHKGR 40

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 53.9 bits (128), Expect = 2e-10
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP----NGQTIFTGSTL 128
            PV+ +  P   + +E     LEC  EG+        +++         N        +L
Sbjct: 2   YPVLKD-QPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSL 60

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
              R    D G Y C A+   G  + R I  + 
Sbjct: 61  VFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 53.7 bits (128), Expect = 2e-10
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 67  EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-- 124
           E +    P     +       EG + + +C  EG+P P + W +++N +  +        
Sbjct: 2   EEKPHVKPYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYD 60

Query: 125 ---GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
                +L I  +  +D   Y C A N +G  A    E+ VE
Sbjct: 61  EEGNCSLTISEVCGDDDAKYTCKAVNSLGE-ATCTAELLVE 100

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 6  ESQVDTPPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNF 51
          E +    P        + V  EG + + +C  EG+P P + W ++ 
Sbjct: 2  EEKPHVKPYFTKTILDMEV-VEGSAARFDCKVEGYPDPEVMWFKDD 46

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 2e-10
 Identities = 18/95 (18%), Positives = 27/95 (28%), Gaps = 7/95 (7%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GST 127
            P I     Q     +G          G P P   W +    I  + +  +         
Sbjct: 4   APKIFER-IQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 62

Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
           L I  +T ED  +    A N  G        + V+
Sbjct: 63  LVIRDVTGEDSASIMVKAINIAGE-TSSHAFLLVQ 96

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 9e-05
 Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRL 54
           P I       +V  +G          G P P   W +N  ++
Sbjct: 4  APKIFERIQSQTV-GQGSDAHFRVRVVGKPDPECEWYKNGVKI 45

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.4 bits (127), Expect = 3e-10
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKE 136
           P  +   EGQS    C       P ++W +++  +  + + +         L I R+  +
Sbjct: 8   PYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGD 67

Query: 137 DRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
           D+G Y   A+N  G      + + V    
Sbjct: 68  DKGEYTVRAKNSYGT-KEEIVFLNVTRHS 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 33.3 bits (75), Expect = 0.004
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 24 VAKEGQSVQLECHAEGHPIPTISWRRNF 51
             EGQS    C       P ++W ++ 
Sbjct: 12 EVGEGQSANFYCRVIASSPPVVTWHKDD 39

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 5e-10
 Identities = 27/103 (26%), Positives = 35/103 (33%), Gaps = 15/103 (14%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNGQ----------- 120
           PP     S   SV   G    L C   +G P    SW ++  ++L               
Sbjct: 2   PPSKPTISVPSSV-TIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60

Query: 121 -TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
                   L    +T  D G YYC AQNG G  A R     ++
Sbjct: 61  TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT-AMRSEAAHMD 102

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 5e-10
 Identities = 24/126 (19%), Positives = 36/126 (28%), Gaps = 38/126 (30%)

Query: 73  PPVI----LNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--------- 119
           PP I        P   V   G  ++L+    G P PT+ W++                  
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 63

Query: 120 ------------------------QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARR 155
                                   +T    S   +    KED G Y    +N +G   + 
Sbjct: 64  DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQV 122

Query: 156 KIEVKV 161
            + VKV
Sbjct: 123 NLTVKV 128

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.8 bits (123), Expect = 1e-09
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 73  PPVILNNSPQLSV--AKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF---TGST 127
            PV                + V L C A  +P  T  W+     +     + +    G  
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDL 63

Query: 128 LQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160
           +    +  +D G+Y CVA N  G    R+  ++
Sbjct: 64  VISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.0 bits (82), Expect = 5e-04
 Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 2/43 (4%)

Query: 12 PPVILN--NSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFK 52
           PV       T        + V L C A  +P  T  W+ N  
Sbjct: 4  GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGT 46

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 2e-09
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 10/90 (11%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR 132
           P +   + P      E       C A G+P+P +   ++           F     +   
Sbjct: 3   PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT---------FPLPIGESVT 53

Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
           +T++  G Y C A++  G    R++ V V 
Sbjct: 54  VTRDLEGTYLCRARSTQGE-VTREVTVNVL 82

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 5e-05
 Identities = 8/59 (13%), Positives = 18/59 (30%)

Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQV 70
          P +   +        E       C A G+P+P +   ++      +  ++  T      
Sbjct: 3  PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGT 61

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 4e-09
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 12/98 (12%)

Query: 82  QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-----------TIFTGSTLQI 130
           QL  A E     +    +G P P++ W    + +                       L++
Sbjct: 8   QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67

Query: 131 PRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT 168
            + T  + G Y  +A N  G+ A   I       P   
Sbjct: 68  NQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNPFEF 104

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 4e-09
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 75  VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT------GSTL 128
           +++    + + A  G+ V+LEC         + W +    I+P  ++ +          L
Sbjct: 1   IMVTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 59

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVK 160
            I   TK D   Y  +   G    A+  +++K
Sbjct: 60  IIEGATKADAAEYSVMTTGGQSS-AKLSVDLK 90

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 6e-09
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 14/102 (13%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNGQTIFT------- 124
           PP     +   S    G    L C   +G P    +W ++   +  N ++          
Sbjct: 2   PPSKPTVNIPSSA-TIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60

Query: 125 ----GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
                  L    ++  D G Y C A+NG G        V++E
Sbjct: 61  LNPTTGELVFDPLSASDTGEYSCEARNGYGT-PMTSNAVRME 101

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 7e-09
 Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 3/89 (3%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRREN-NAILPNGQTIFTGSTLQI 130
            P     +  +  +  G SV L C         T+ W      A     +    G  L +
Sbjct: 6   CPAQ-EVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLL 64

Query: 131 PRITKEDRGAYYCVAQNGIGRGARRKIEV 159
             +   D G Y C             ++V
Sbjct: 65  RSVQLHDSGNYSCYRAGRPAGTVHLLVDV 93

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-08
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 84  SVAKEGQSVQLECHAEGH-PIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYY 142
            V  EGQ + L CH   +  +  + + ++  A+    +  +    + I   T ED G YY
Sbjct: 10  EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEAL----KYWYENHNISITNATVEDSGTYY 65

Query: 143 CVAQNGIGRGARRKIEVKVEFAP 165
           C  +          + + V  AP
Sbjct: 66  CTGKVWQLDYESEPLNITVIKAP 88

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 3e-08
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 5/79 (6%)

Query: 84  SVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYY 142
              +EG+++ L CH+    P+  +++ +   +   +           IP+      G Y+
Sbjct: 10  LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSD----PNFSIPQANHSHSGDYH 65

Query: 143 CVAQNGIGRGARRKIEVKV 161
           C    G    + + + + V
Sbjct: 66  CTGNIGYTLYSSKPVTITV 84

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 3e-08
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 18/105 (17%)

Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG-------- 125
           PVI++ + +      G  +QL C+  G       W+   + I  +   +           
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 126 --------STLQIPRITKEDRGAYY-CVAQNGIGRGARRKIEVKV 161
                   + L I  I        + C A+N  G      I++  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI-DAAYIQLIY 105

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (112), Expect = 4e-08
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 13/104 (12%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN--------GQT 121
           V  PP +++    L   +      +E    G+P PT+ W      +  +         + 
Sbjct: 2   VYYPPRVVS----LEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 57

Query: 122 IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
             +   L   + T  + G Y  +A+N +G  A + I       P
Sbjct: 58  EISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEP 100

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.3 bits (111), Expect = 5e-08
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS----TL 128
            P IL  S ++ + K G +  LE    G P PT +W   ++      + +        ++
Sbjct: 2   KPKILTASRKIKI-KAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60

Query: 129 QIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
             P   + D G Y    +N +G       EV V+
Sbjct: 61  FFPSAKRADSGNYKLKVKNELGE-DEAIFEVIVQ 93

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 12 PPVILNNSTQLSVAKEGQSVQLECHAEGHPIPTISWRRNF 51
           P IL  S ++ + K G +  LE    G P PT +W    
Sbjct: 2  KPKILTASRKIKI-KAGFTHNLEVDFIGAPDPTATWTVGD 40

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 6e-08
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 7/83 (8%)

Query: 86  AKEGQSVQLECHAEGHPIPTISWRRENNAILPNG-------QTIFTGSTLQIPRITKEDR 138
              GQ    +C A G  +       +   +            +    ++  +   TK D 
Sbjct: 13  VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDA 72

Query: 139 GAYYCVAQNGIGRGARRKIEVKV 161
           G Y C+ +   G G     E+ V
Sbjct: 73  GKYRCMIRTEGGVGISNYAELVV 95

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 9e-08
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 70  VDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAI---------LPNGQ 120
           V   P I      L          +    +G+P P + W      +         +    
Sbjct: 1   VHFAPTIT----FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56

Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
                  LQ+   T  + G Y  +A+N  G+   ++I       P
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWP 100

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 1e-07
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 14/101 (13%)

Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWR------------RENNAILPNGQT 121
             +      + V  E +S++L C   G   P + W+                      + 
Sbjct: 2   GSVYTAQSDVQV-PENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60

Query: 122 IFTGSTLQIPRITKEDRGAYYCVAQNGIGRG-ARRKIEVKV 161
            F+ S +    +T++D G Y C+     G+      I + V
Sbjct: 61  TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-07
 Identities = 14/92 (15%), Positives = 24/92 (26%), Gaps = 10/92 (10%)

Query: 81  PQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILPNGQTIF---------TGSTLQI 130
                   G   +LEC  +     P ++W + N       +            +   L  
Sbjct: 10  QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHF 69

Query: 131 PRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
             +   D G+Y C A             + V 
Sbjct: 70  EPVLPNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 3e-07
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 14/101 (13%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-------- 124
           PP +           EG++  L C +E  P  T     +            +        
Sbjct: 2   PPRVKA-VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60

Query: 125 ---GSTLQIPRITKEDR-GAYYCVAQNGIGRGARRKIEVKV 161
               S L I  +  E   G Y C   +  G   +  I ++V
Sbjct: 61  SQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITLRV 100

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 4e-07
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 8/92 (8%)

Query: 88  EGQSVQLECH------AEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGA 140
                 L C        E + +P + W ++   +L +          L +  + ++ RG 
Sbjct: 13  VAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGN 72

Query: 141 YYCVAQNGIGRGARRKIEVKVEFAPIVTVQST 172
           Y C A      G +  I   +EF  +   + T
Sbjct: 73  YTCHASYTYL-GKQYPITRVIEFITLEENKPT 103

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 5e-07
 Identities = 16/108 (14%), Positives = 24/108 (22%), Gaps = 17/108 (15%)

Query: 71  DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAILP---------- 117
           D P  +    PQ      G S+       G  +   P + W +     L           
Sbjct: 1   DDPIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLH 60

Query: 118 ---NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE 162
              +  +      L I        G Y C               + V 
Sbjct: 61  DSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKF-DCSNFNLTVH 107

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 6e-07
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 6/86 (6%)

Query: 81  PQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAIL----PNGQTIFTGSTLQIPRITK 135
             + V+   +     C         TI+W ++++          +       L       
Sbjct: 9   KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 68

Query: 136 EDRGAYYCVAQNGIGRGARRKIEVKV 161
           ED G YYCV +N      R KI  K 
Sbjct: 69  EDSGHYYCVVRNSSYC-LRIKISAKF 93

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 6e-07
 Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 15/106 (14%)

Query: 69  QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL-----------P 117
            V+ PP+I  +S Q   A  G+  Q++C     P P          +L            
Sbjct: 3   TVNGPPII--SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET 60

Query: 118 NGQTIFTGSTLQIPRITKE-DRGAYYCVAQNGIGRGARRKIEVKVE 162
                   STL I  I +   +  Y C A N  G      I +K +
Sbjct: 61  ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQ 105

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 8e-07
 Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 7/94 (7%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGH-PIPTISWRRENNAILPNGQTIFTGSTLQI 130
              ++L       V KE   + L CH+  +  +  +++ +                   I
Sbjct: 2   IGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDF----HI 55

Query: 131 PRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFA 164
           P+ T +D G+Y+C    G    +   + + +  A
Sbjct: 56  PKATLKDSGSYFCRGLVGSKNVSSETVNITITQA 89

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 1e-06
 Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 71  DTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQI 130
           D P  ++   PQ     E  SV L+C     P    +    N +++ +  + +      I
Sbjct: 2   DLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSY-----FI 56

Query: 131 PRITKEDRGAYYCVAQNGIG 150
              T  D G Y C       
Sbjct: 57  DAATVNDSGEYRCQTNLSTL 76

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 17/104 (16%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPI---PTISWRRENNAILP-------------NGQTIFT 124
           PQ    K G+ +      +   +   PTI W +     L                 +   
Sbjct: 7   PQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 66

Query: 125 GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAPIVT 168
              +QI +      G Y C              +++V  +   T
Sbjct: 67  TFEMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHESTGTT 109

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 3e-06
 Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS-TLQIPRITKEDR 138
           S +    K G + +L+C  + +        +       + +    G   L I  +++ D 
Sbjct: 3   SYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDS 62

Query: 139 GAYYCVAQNGIGRG------ARRKIEVKV 161
           G Y C+++  +         A+  +EVKV
Sbjct: 63  GVYQCLSEERVKNKTVFQVVAKHVLEVKV 91

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-06
 Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 6/80 (7%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF-----TGST 127
                          +G  ++L           + W +    I  +G            T
Sbjct: 5   STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT 63

Query: 128 LQIPRITKEDRGAYYCVAQN 147
           L I + +  D  AY CV   
Sbjct: 64  LTISQCSLADDAAYQCVVGG 83

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-06
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 9/87 (10%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEG---HPIPTISWRRENNAILPN------GQTIF 123
           PP  +  + Q ++   G+S  +EC           T+   R N  +              
Sbjct: 1   PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60

Query: 124 TGSTLQIPRITKEDRGAYYCVAQNGIG 150
             +T       ++    + C+A   + 
Sbjct: 61  ATATFNSTADREDGHRNFSCLAVLDLM 87

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 4e-06
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 13/101 (12%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL------------PNGQ 120
             V +++S       E   V+L C   G   P + W+ +                    +
Sbjct: 3   GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
             F  + +    +T+ED G Y C+     G  +  +++VK+
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGN-SYGEVKVKL 102

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 5e-06
 Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 5/83 (6%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEG---HPIPTISWRRENNAILPNGQTIFTG-ST 127
           TP  +   +P  S    G+ + L C  EG       T+   R    +            T
Sbjct: 3   TPERV-ELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT 61

Query: 128 LQIPRITKEDRGAYYCVAQNGIG 150
             +          + C  +  + 
Sbjct: 62  TTVLVRRDHHGAQFSCRTELDLR 84

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 7e-06
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)

Query: 85  VAKEGQSVQLECHAEGHPIPTIS-WRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYC 143
           +A+ G SV L C   G   P  S   + ++ +        T STL +  ++  +  +Y C
Sbjct: 12  LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLC 71

Query: 144 VAQNGIGRGARRKIEVKV 161
            A     +   + I+V++
Sbjct: 72  TATCESRK-LEKGIQVEI 88

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (95), Expect = 7e-06
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 72  TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTG-STLQI 130
           T P +       +  KE  SV L C +              +  L    T+    S L+I
Sbjct: 4   TQPFL---QVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRI 60

Query: 131 PRITKEDRGAYYCVAQNGIGRGARRKIEVKVEFAP 165
             I +ED G Y C   N +       I++ + F P
Sbjct: 61  DPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 95

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (95), Expect = 9e-06
 Identities = 22/90 (24%), Positives = 27/90 (30%), Gaps = 8/90 (8%)

Query: 80  SPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQ-------TIFTGSTLQIP 131
            P       G+S    C          ISW   N   L   Q            STL I 
Sbjct: 6   VPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIY 65

Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
               +D G Y CV     G  +   + VK+
Sbjct: 66  NANIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.8 bits (94), Expect = 1e-05
 Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 5/71 (7%)

Query: 85  VAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNG----QTIFTGSTLQIPRITKEDRG 139
              EG  V   C     +P  +  W                   T   L I +    D G
Sbjct: 15  KITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLG 74

Query: 140 AYYCVAQNGIG 150
            Y C A + I 
Sbjct: 75  NYSCFATSHID 85

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 20/147 (13%), Positives = 35/147 (23%), Gaps = 38/147 (25%)

Query: 24  VAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQL 83
            A  G   +L C        T      ++                               
Sbjct: 13  RALVGDEAELPCRISPGKNATGMEVGWYR------------------------------- 41

Query: 84  SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGS-TLQIPRITKEDRGAYY 142
                  S  +  +  G                   ++I  G   L+I  +   D G Y 
Sbjct: 42  ----SPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYT 97

Query: 143 CVAQNGIGRGARRKIEVKVEFAPIVTV 169
           C  ++   +     +E+KVE  P   +
Sbjct: 98  CFFRDHSYQ-EEAAVELKVE-DPFYWI 122

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 14/91 (15%)

Query: 85  VAKEGQSVQLEC------------HAEGHPIPTISWRRENNAILPNGQ-TIFTGSTLQIP 131
               G  + L                E        ++R+    L +G   I     L+I 
Sbjct: 6   WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK 65

Query: 132 RITKEDRGAYYCVAQNGIGRGARRK-IEVKV 161
            +T++D G Y     +  G     K +++++
Sbjct: 66  NLTRDDSGTYNVTVYSTNGTRILNKALDLRI 96

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 3e-05
 Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 26/98 (26%)

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT----------------IFTGS-- 126
           + K+G +V+L C A         W+  N   +   Q                   +    
Sbjct: 5   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64

Query: 127 ---TLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
               L I  +  ED   Y C  ++      + ++++ V
Sbjct: 65  GNFPLIIKNLKIEDSDTYICEVEDQ-----KEEVQLLV 97

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 4e-05
 Identities = 8/66 (12%), Positives = 15/66 (22%), Gaps = 5/66 (7%)

Query: 86  AKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ----TIFTGSTLQIPRITKEDRGAY 141
              G++   E      P     W+ +   +  +             L +        G  
Sbjct: 13  VFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEV 71

Query: 142 YCVAQN 147
              A N
Sbjct: 72  SFQAAN 77

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 74  PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRI 133
           P + + +P  +   +G++V L C+       + +    N ++     +      L I   
Sbjct: 2   PKV-SLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-----LNIVNA 55

Query: 134 TKEDRGAYYCVAQNGIG 150
             ED G Y C  Q    
Sbjct: 56  KFEDSGEYKCQHQQVNE 72

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 1e-04
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 5/92 (5%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP--NGQTIFTGSTLQI 130
            P +    P  SV   G  V L C  EG  +    W                     L +
Sbjct: 2   VPTLKVQVPNASV-DVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 60

Query: 131 PRITKEDRGAYY-CVAQNGIGRGARRKIEVKV 161
             +T +       C A+N +GR A   ++V V
Sbjct: 61  ANVTSDLNRKNVTCWAENDVGR-AEVSVQVNV 91

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 2e-04
 Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 15/80 (18%)

Query: 85  VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--------------TGSTLQI 130
                 +V         P+  + W+++ + +     + F                 +L I
Sbjct: 6   YGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTI 64

Query: 131 PRITKEDRGAYYCVAQNGIG 150
             +T  D   Y   + N   
Sbjct: 65  YNLTSSDEDEYEMESPNITD 84

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 79  NSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGST--LQIPRITKE 136
             P++    EG+ + + C      I     +   + ++P+G+ I   S     I   T +
Sbjct: 10  EIPEIIHMTEGRELVIPCRVTSPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYK 69

Query: 137 DRGAYYCVAQNG 148
           + G   C A   
Sbjct: 70  EIGLLTCEATVN 81

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 23/91 (25%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPTISWRR---------------ENNAILPNGQTIFT 124
           SP+  VA  G+ V L C    +    + W R                 N    +    + 
Sbjct: 7   SPRNKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYE 65

Query: 125 GS-------TLQIPRITKEDRGAYYCVAQNG 148
            S       +L +   T      Y+C +  G
Sbjct: 66  ASRPSQEQFSLILESATPSQTSVYFCASGGG 96

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 3e-04
 Identities = 14/75 (18%), Positives = 17/75 (22%), Gaps = 5/75 (6%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPR 132
           P  +L   PQ     +  SV L C     P         N                   +
Sbjct: 3   PKAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHN-----GNLIPTHTQPSYRFK 57

Query: 133 ITKEDRGAYYCVAQN 147
               D G Y C    
Sbjct: 58  ANNNDSGEYTCQTGQ 72

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 4e-04
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 73  PPVILNNSPQLSVAKEGQSVQLECH-AEGHPIPTISWRRENNAILPNGQTIFTGSTLQIP 131
            P+ +     +     G S QL C  A      ++ WR  + ++          S L + 
Sbjct: 2   KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGR-SVLTVR 60

Query: 132 RITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
             +    G   CV   G     +  +++ V
Sbjct: 61  NASLSAAGTRVCVGSCGGRT-FQHTVQLLV 89

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 5e-04
 Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 7/89 (7%)

Query: 74  PVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQIPR 132
           P      P+          QL C A       TI W R    I     +    +   +  
Sbjct: 2   PFFTVE-PKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVT- 59

Query: 133 ITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
                   + C A N  G  + R   V +
Sbjct: 60  ----QSTMFSCEAHNLKGLASSRTATVHL 84

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 20/101 (19%)

Query: 81  PQLSVAKEGQSVQLECHAEGHPIPTISWRR---------------ENNAILPNGQ----- 120
                  E  +V L  H     +   +W +                +N            
Sbjct: 6   AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGRE 65

Query: 121 TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
            I++  +L    IT +D G Y     +   R  +  +   V
Sbjct: 66  IIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 34.0 bits (77), Expect = 0.003
 Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 23/106 (21%)

Query: 77  LNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF------------- 123
           L      SV   G++V++ C  +  P     W ++ +                       
Sbjct: 3   LIQPSSASVT-VGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFS 61

Query: 124 -----TGSTLQIPRITKEDRGAYYCVAQNGIGR----GARRKIEVK 160
                T +TL I     ED  AYYC++  G       G+  ++ V 
Sbjct: 62  GSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVL 107

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 15/114 (13%), Positives = 30/114 (26%), Gaps = 33/114 (28%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPT----ISWRR------------------------- 110
             ++    +G++  L C     P       I W                           
Sbjct: 10  PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYY 69

Query: 111 ---ENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV 161
              +      +       +++ +  +   D G Y C  +   G  A +KI + V
Sbjct: 70  PDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGV-ANKKIHLVV 122

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 21/107 (19%)

Query: 75  VILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI------------ 122
           + L  +P    A  G++V + C A  +    ++W ++     P                 
Sbjct: 2   IELTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSR 61

Query: 123 FTGS------TLQIPRITKEDRGAYYCVAQNGIGR---GARRKIEVK 160
           F+GS      +L+I  +  ED G+YYC    G      G   K+E+K
Sbjct: 62  FSGSGSGTQFSLKINSLLPEDFGSYYCQHHYGTPPLTFGGGTKLEIK 108

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

 Score = 33.9 bits (77), Expect = 0.004
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 21/94 (22%)

Query: 80  SPQLSVAKEGQSVQLECHAEGHPIPTISWRR------------------ENNAILPNGQT 121
           +P+  +   GQ+V L C  +    P +SW +                  +    LP    
Sbjct: 7   NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADY 66

Query: 122 I---FTGSTLQIPRITKEDRGAYYCVAQNGIGRG 152
           +    T + L++           YC         
Sbjct: 67  LATRVTDTELRLQVANMSQGRTLYCTCSADRVGN 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.69
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.65
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.6
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.58
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.57
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.56
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.55
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.54
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.54
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.54
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.53
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.52
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.52
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.52
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.52
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.51
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.51
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.51
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.5
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.5
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.49
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.47
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.47
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.47
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.47
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.46
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.46
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.46
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.46
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.45
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.45
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.43
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.42
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.42
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.42
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.42
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.42
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.41
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.41
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.4
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.39
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.38
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.38
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.38
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.38
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.38
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.38
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.37
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.37
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.37
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.36
d2avga1	110	Cardiac myosin binding protein C, different domain	99.34
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.34
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.34
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.34
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.33
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.33
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.33
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.33
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.33
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.32
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.31
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.31
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.31
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.31
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.29
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.29
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.28
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.28
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.28
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.28
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.28
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.28
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.27
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.27
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.27
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.27
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.26
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.26
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.25
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.24
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.24
d2avga1	110	Cardiac myosin binding protein C, different domain	99.24
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.21
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.2
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.19
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.18
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.18
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.18
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.18
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.17
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.17
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.16
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.16
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.16
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.16
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.16
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.15
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.15
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.14
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.13
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.12
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.11
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.08
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.08
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.07
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.07
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.01
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.99
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.96
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.94
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.86
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.81
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.8
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.76
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.73
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.68
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.65
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.64
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.63
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.59
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.58
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.56
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.55
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.53
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.53
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.5
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.47
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.45
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.43
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.42
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.42
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.41
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.41
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.39
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.39
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.38
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.37
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.37
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.36
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.35
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.35
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.34
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.34
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.34
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.34
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.34
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.33
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.33
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.33
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.33
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.31
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.31
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.31
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.3
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.3
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.3
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.3
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.3
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.29
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.29
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.29
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.29
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.28
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.28
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	98.27
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.26
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.26
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.25
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.25
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	98.24
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.24
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.24
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.24
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.24
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.23
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.23
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.23
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.23
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.22
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.21
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.21
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.21
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.21
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.21
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.21
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.2
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.2
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.2
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.2
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.2
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.19
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.19
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.19
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.19
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.19
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.18
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.18
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.18
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.17
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.17
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.16
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.16
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.15
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.15
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.14
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.13
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.13
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.13
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.12
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.12
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.11
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.11
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.1
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.09
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	98.09
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.08
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.07
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.07
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.07
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.07
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.06
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.06
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.06
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.06
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	98.05
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	98.05
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.04
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.04
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.02
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	98.02
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	98.01
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.01
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.01
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.0
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.0
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.99
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.99
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.99
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.99
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	97.98
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.98
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.97
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.97
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.97
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.96
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	97.96
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.96
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.95
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.95
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.95
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.95
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.94
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.94
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.94
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.93
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.93
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.92
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.92
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.92
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.92
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.91
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.9
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.9
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.9
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.89
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.89
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.89
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.89
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.89
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.88
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.88
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.88
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.87
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.86
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.86
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.86
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.85
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.85
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.84
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.84
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.84
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.83
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.83
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.83
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.82
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.82
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.82
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.82
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.81
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.81
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.81
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.81
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.81
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.8
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.79
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.79
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.79
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.79
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.79
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.79
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.79
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.78
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.78
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.76
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.75
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.73
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.71
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.71
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.7
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.7
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.69
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.69
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.68
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.67
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.67
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.66
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.66
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.66
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.64
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.63
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.63
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.62
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.62
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.6
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.59
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.59
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.59
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.57
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.57
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.56
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.56
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.54
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.53
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.52
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.51
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.51
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.5
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.5
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.49
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.49
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.49
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.49
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.48
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.45
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.44
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.44
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.44
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.43
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.42
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.42
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.42
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.41
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.4
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.39
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.37
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.37
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.36
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.35
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.35
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.34
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.34
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	97.33
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.33
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.31
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.31
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.31
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.3
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.29
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.29
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	97.29
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.28
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.27
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.27
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.26
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.26
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.25
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.25
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.25
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.24
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.23
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.22
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.21
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.19
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.19
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.19
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.19
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.18
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.18
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.18
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.18
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.18
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.17
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.17
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.14
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.14
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.14
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.12
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.11
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.11
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.11
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.11
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.09
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.09
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.09
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.09
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.08
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.07
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.07
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.06
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.06
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.06
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.05
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.05
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.05
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.05
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.04
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.04
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	97.04
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.03
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.03
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.03
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.01
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.01
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.01
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.01
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.0
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.0
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.0
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.99
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.98
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.97
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.96
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.95
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.95
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	96.94
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.94
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.92
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.91
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.91
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.9
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.9
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.88
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	96.88
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.88
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.88
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	96.88
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	96.87
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.86
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.86
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.85
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.84
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.84
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.82
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.82
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.81
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.81
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.8
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.8
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.77
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.77
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.76
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.75
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	96.75
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.74
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.73
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.73
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.72
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.71
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.7
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.69
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.67
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.67
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.65
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.62
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.62
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.62
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.61

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.69  E-value=3.9e-16  Score=92.27  Aligned_cols=87  Identities=28%  Similarity=0.543  Sum_probs=74.0

Q ss_pred             cEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCce
Q psy15206         74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGA  153 (232)
Q Consensus        74 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~  153 (232)
                      |.++. .+....+..|+++.|.|.+.|.|.|.+.|+++|..+....+.....+.|.|.++..+|.|.|+|.+.|..|. .
T Consensus         2 P~f~~-~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~   79 (89)
T d1cs6a4           2 PDWLD-VITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT-V   79 (89)
T ss_dssp             EEEEE-CCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEE-E
T ss_pred             CCeEE-ECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCE-E
Confidence            34443 566778889999999999999999999999999998877777778889999999999999999999999886 4


Q ss_pred             eeEEEEEEE
Q psy15206        154 RRKIEVKVE  162 (232)
Q Consensus       154 ~~~~~l~v~  162 (232)
                      .....|.|+
T Consensus        80 ~~~~~l~V~   88 (89)
T d1cs6a4          80 YASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            556666664

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.65  E-value=1.7e-15  Score=89.47  Aligned_cols=87  Identities=29%  Similarity=0.514  Sum_probs=69.1

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      +|.+.........+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .+....++.|.|.++...|.|.|.|.+.|..|. 
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-   79 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSG-GRATVTDSGLVIKGVKNGDKGYYGCRATNEHGD-   79 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCS-SSEEEETTEEEESSCCSTTCEEEEEEEEETTEE-
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCcc-ccEEEeeeeEEECCCChhhCEEEEEEEEECCCE-
Confidence            355554344456678899999999999999999999999988754 345566778999999999999999999998886 


Q ss_pred             eeeEEEEEE
Q psy15206        153 ARRKIEVKV  161 (232)
Q Consensus       153 ~~~~~~l~v  161 (232)
                      ....+.|.|
T Consensus        80 ~~~~~~l~V   88 (89)
T d1biha4          80 KYFETLVQV   88 (89)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            445555544

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.60  E-value=3.4e-15  Score=88.61  Aligned_cols=87  Identities=32%  Similarity=0.533  Sum_probs=69.1

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      +|.+....+....+.+|+.+.|.|.+.|.|.|.+.|++++.....  .....++.|.|.++..+|.|.|+|.+.|..|. 
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-   80 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--KWLSSEPLLHIQNVDFEDEGTYECEAENIKGR-   80 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC--CCSBSSSEEEECSCCGGGCEEEEEEEEETTEE-
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce--EeeeeeeEEEeCCCCccCCEEEEEEEEECCCE-
Confidence            455554456778888999999999999999999999997755432  22334678999999999999999999999887 


Q ss_pred             eeeEEEEEEE
Q psy15206        153 ARRKIEVKVE  162 (232)
Q Consensus       153 ~~~~~~l~v~  162 (232)
                      ....+.|.|.
T Consensus        81 ~~~~~~l~V~   90 (91)
T d1cs6a3          81 DTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            5556666664

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.5e-15  Score=87.12  Aligned_cols=67  Identities=15%  Similarity=0.268  Sum_probs=55.4

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.+...|.+..+..|+++.|.|.+.|.|.| +|+|+|||..+.......+.+......|+|.|+|.|+
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~~~~~l~~~~~~d~G~Y~C~A~   69 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAH   69 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCCSSCEEEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCCcceEEecCCccccEEEEEEEE
Confidence            778888888899999999999999999988 8999999999876543333444445689999999984

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.8e-14  Score=86.30  Aligned_cols=85  Identities=24%  Similarity=0.354  Sum_probs=70.9

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGIGRGARR  155 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  155 (232)
                      .+....+..|+.+.|.|.+.|.|.+.+.|++++..+....+....    ...|.|.++..+|.|.|+|.+.|..|. ...
T Consensus         6 ~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~   84 (101)
T d2cqva1           6 FPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS-RQA   84 (101)
T ss_dssp             CCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCE-EEC
T ss_pred             eCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCE-EEE
Confidence            466778889999999999999999999999999988666554332    236999999999999999999999887 666


Q ss_pred             EEEEEEEecc
Q psy15206        156 KIEVKVEFAP  165 (232)
Q Consensus       156 ~~~l~v~~~p  165 (232)
                      .+.|.|...|
T Consensus        85 ~~~l~V~~~P   94 (101)
T d2cqva1          85 QVNLTVVDKP   94 (101)
T ss_dssp             CEEEEEECSC
T ss_pred             EEEEEEEecC
Confidence            7788887655

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=4e-14  Score=83.61  Aligned_cols=84  Identities=23%  Similarity=0.430  Sum_probs=67.0

Q ss_pred             EecCCCCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206         76 ILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGAR  154 (232)
Q Consensus        76 ~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  154 (232)
                      +....+....+.+|+++.|.|.+. +.|.+.+.|++++..+... .....++.|.|.++...|+|.|+|.+.|..|. ..
T Consensus         4 v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~   81 (89)
T d1gl4b_           4 VTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAM-DQ   81 (89)
T ss_dssp             EEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT-TEEEETTEEEECSCCGGGCEEEEEEEECSSCE-EE
T ss_pred             EEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeecc-ccEeeceEEEEecCCcccCEEEEEEEEECCCE-EE
Confidence            333355667888999999999997 5777899999998876544 34556788999999999999999999999886 55


Q ss_pred             eEEEEEE
Q psy15206        155 RKIEVKV  161 (232)
Q Consensus       155 ~~~~l~v  161 (232)
                      ..+.|.|
T Consensus        82 ~~~~l~V   88 (89)
T d1gl4b_          82 GTATLHV   88 (89)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5566655

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.56  E-value=1e-14  Score=86.01  Aligned_cols=67  Identities=18%  Similarity=0.300  Sum_probs=57.8

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeE-----EEEEeccccCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYH-----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~-----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.+...+.+..+..|+++.|.|.+.|.|.|.+.|+|||..+..+.++     .|.+.++...|+|.|.|.|.
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   73 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAE   73 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEE
Confidence            67777888889999999999999999999999999999988766544     45566778899999999974

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.55  E-value=6e-14  Score=85.02  Aligned_cols=88  Identities=25%  Similarity=0.481  Sum_probs=71.1

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee-----CCeEEECCCCCCCCeEEEEEeEe
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT-----GSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      +|.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+....     ..+|.|.++...|.|.|+|.+.|
T Consensus         8 ~P~f~~-~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           8 KPYFTK-TILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEc-CCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            455554 566788889999999999999999999999999998766554331     23699999999999999999999


Q ss_pred             CCCCceeeEEEEEEE
Q psy15206        148 GIGRGARRKIEVKVE  162 (232)
Q Consensus       148 ~~~~~~~~~~~l~v~  162 (232)
                      ..|. ....+.|.|+
T Consensus        87 ~~G~-~~~~~~L~V~  100 (102)
T d1fhga_          87 SLGE-ATCTAELLVE  100 (102)
T ss_dssp             TTEE-EEEEEEEEEE
T ss_pred             CCcE-EEEEEEEEEE
Confidence            9887 5566666664

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.54  E-value=1.9e-14  Score=85.71  Aligned_cols=87  Identities=24%  Similarity=0.390  Sum_probs=69.0

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe----eCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      +|.+.. .+....+..|+.+.|.|.+.|.|.|.+.|++++..+....+...    ....|.|.++..+|.|.|+|.+.|.
T Consensus         2 ~P~i~~-~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~   80 (93)
T d1wiua_           2 KPKILT-ASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECC-CCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEe-CCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEEC
Confidence            355544 56678888999999999999999999999999988765444322    1347999999999999999999999


Q ss_pred             CCCceeeEEEEEE
Q psy15206        149 IGRGARRKIEVKV  161 (232)
Q Consensus       149 ~~~~~~~~~~l~v  161 (232)
                      .|. ....+.|.|
T Consensus        81 ~G~-~~~~~~l~V   92 (93)
T d1wiua_          81 LGE-DEAIFEVIV   92 (93)
T ss_dssp             TEE-EEEEEEEEE
T ss_pred             CCE-EEEEEEEEE
Confidence            887 555566655

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.54  E-value=2.8e-14  Score=85.68  Aligned_cols=88  Identities=22%  Similarity=0.408  Sum_probs=68.7

Q ss_pred             cEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        74 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      |.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....+....    ...|.|.++...|.|.|.|.+.|..
T Consensus         2 P~f~~-~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           2 PRFIV-KPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             CEEEE-CCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CEEEE-eCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            44443 466678889999999999999999999999999987655443221    2369999999999999999999988


Q ss_pred             CCceeeEEEEEEEe
Q psy15206        150 GRGARRKIEVKVEF  163 (232)
Q Consensus       150 ~~~~~~~~~l~v~~  163 (232)
                      |. ....+.|.|..
T Consensus        81 G~-~~~~~~l~V~~   93 (97)
T d1koaa1          81 GT-KEEIVFLNVTR   93 (97)
T ss_dssp             EE-EEEEECCEEEC
T ss_pred             CE-EEEEEEEEEee
Confidence            76 44556666653

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3e-14  Score=84.52  Aligned_cols=82  Identities=24%  Similarity=0.491  Sum_probs=66.0

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--e----CCeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--T----GSTLQIPRITKEDRGAYYCVAQNGIGRGAR  154 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~----~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  154 (232)
                      |....+.+|+.+.|.|.+.+.|.+.+.|++++..+........  .    ...|.|.++..+|.|.|+|.+.|..|...+
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            5567888999999999999999999999999988765443222  1    236899999999999999999998887555


Q ss_pred             eEEEEEEE
Q psy15206        155 RKIEVKVE  162 (232)
Q Consensus       155 ~~~~l~v~  162 (232)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            66666664

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.53  E-value=8.4e-14  Score=83.71  Aligned_cols=88  Identities=20%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe---eC--CeEEECCCCCCCCeEEEEEeEe
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF---TG--STLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~---~~--~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      +|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+...   .+  ..|.|.++...|.|.|.|.+.|
T Consensus         4 aP~f~~-~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           4 APKIFE-RIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEE-CCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCeEec-CCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            455554 45677888999999999999999999999999998876554322   12  3799999999999999999999


Q ss_pred             CCCCceeeEEEEEEE
Q psy15206        148 GIGRGARRKIEVKVE  162 (232)
Q Consensus       148 ~~~~~~~~~~~l~v~  162 (232)
                      ..|. ......|.|.
T Consensus        83 ~~G~-~~~~~~L~V~   96 (98)
T d1g1ca_          83 IAGE-TSSHAFLLVQ   96 (98)
T ss_dssp             TTEE-EEEEEEEEEE
T ss_pred             CCcE-EEEEEEEEEE
Confidence            8887 4556666664

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.52  E-value=3.4e-14  Score=85.30  Aligned_cols=68  Identities=13%  Similarity=0.236  Sum_probs=59.2

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC---------CCeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN---------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~---------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|||..+..         ...+.|.+.++...|+|.|.|.|.
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   77 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK   77 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEE
Confidence            37777888888999999999999999999999999999988753         345578888999999999999973

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.4e-14  Score=81.35  Aligned_cols=75  Identities=21%  Similarity=0.327  Sum_probs=61.9

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      ..+.+|+++.|.|.+.|.|.|.+.|++++...      ......|.|.++..+|+|.|.|.+.|..|. ....+.+.|..
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~------~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~-~~~~~~v~V~~   81 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLA   81 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEEEEECTTCCE------EEESSEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEECEEC
T ss_pred             eEEECCCeEEEEEEeEcCCchheEEEeecccc------eeeeeeeeeeecccccccEEEEEEEeCCCE-EEEEEEEEEEe
Confidence            45779999999999999999999999876543      344667999999999999999999999876 55667777665


Q ss_pred             cc
Q psy15206        164 AP  165 (232)
Q Consensus       164 ~p  165 (232)
                      .|
T Consensus        82 ~~   83 (84)
T d2nxyb2          82 FQ   83 (84)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=9.3e-14  Score=81.85  Aligned_cols=86  Identities=19%  Similarity=0.293  Sum_probs=64.8

Q ss_pred             cEEecCCCCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         74 PVILNNSPQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        74 p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      |..+........+..|+++.|.|.+. +.|.+.+.|++.+..+.. .......+.|.|.++..+|+|.|.|.+.|..+. 
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~-   80 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA-VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-   80 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC-EEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee-eeccCceeeEEcCccChhhCCcEEEEEEeCCCc-
Confidence            44555445557788999999999875 788889999987765421 122223467999999999999999999998776 


Q ss_pred             eeeEEEEEE
Q psy15206        153 ARRKIEVKV  161 (232)
Q Consensus       153 ~~~~~~l~v  161 (232)
                      ....+.|.|
T Consensus        81 ~~~s~~l~V   89 (90)
T d1gsma1          81 FQHTVQLLV   89 (90)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            666666665

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.2e-14  Score=81.66  Aligned_cols=82  Identities=26%  Similarity=0.356  Sum_probs=62.2

Q ss_pred             cEEecCCCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        74 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      |.+.. .+....+.+|+++.|.|.+.|.|.| .++|+++|..+....     .+.+.|.....+|.|.|+|.+.|..|..
T Consensus         2 P~f~~-~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-----~~~~~l~~~~~~d~G~Y~C~A~N~~G~~   75 (85)
T d1rhfa2           2 PFFTV-EPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----PSPSVLNVTGVTQSTMFSCEAHNLKGLA   75 (85)
T ss_dssp             CEEEE-CCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-----ESSEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             CcEEE-eCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-----CcceEEecCCccccEEEEEEEEcCCCcE
Confidence            33443 5667788899999999999999987 899999998875332     2335566667789999999999998865


Q ss_pred             eeeEEEEEE
Q psy15206        153 ARRKIEVKV  161 (232)
Q Consensus       153 ~~~~~~l~v  161 (232)
                      .++.+.+.|
T Consensus        76 ~S~~~~v~V   84 (85)
T d1rhfa2          76 SSRTATVHL   84 (85)
T ss_dssp             ECCCEEEEE
T ss_pred             EEEEEEEEE
Confidence            555555554

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.51  E-value=4.2e-14  Score=85.05  Aligned_cols=68  Identities=15%  Similarity=0.185  Sum_probs=58.2

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC----------CeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND----------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~----------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|||..+..+          +.+.|.+.++...|+|.|.|.|.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   81 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   81 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence            577777788888999999999999999999999999999887643          33467778888899999999873

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.51  E-value=1.3e-13  Score=82.67  Aligned_cols=81  Identities=21%  Similarity=0.413  Sum_probs=65.5

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc--EEe----eCCeEEECCCCCCCCeEEEEEeEeCCCCcee
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIF----TGSTLQIPRITKEDRGAYYCVAQNGIGRGAR  154 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~--~~~----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~  154 (232)
                      +....+..|+++.|.|.+.|.|.+.+.|++++..+.....  ...    ...+|.|.+++.+|.|.|+|.+.|..|....
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            3567888999999999999999999999999998754332  211    2358999999999999999999999887555


Q ss_pred             eEEEEEE
Q psy15206        155 RKIEVKV  161 (232)
Q Consensus       155 ~~~~l~v  161 (232)
                      ..+.|.|
T Consensus        90 ~s~~L~V   96 (97)
T d1biha3          90 HSLKLTV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6666665

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.51  E-value=2e-14  Score=85.26  Aligned_cols=81  Identities=25%  Similarity=0.587  Sum_probs=65.2

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe----eCCeEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF----TGSTLQIPRITKEDRGAYYCVAQNGIGRGARR  155 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  155 (232)
                      .|....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+...    ..+.|.|.++...|.|.|.|.+.|..|. ...
T Consensus         5 ~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~   83 (91)
T d1tnna_           5 KPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGK-QEA   83 (91)
T ss_dssp             CCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCB-CCE
T ss_pred             CCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCE-EEE
Confidence            45667888999999999999999999999999987765443222    2357999999999999999999998887 444


Q ss_pred             EEEEEE
Q psy15206        156 KIEVKV  161 (232)
Q Consensus       156 ~~~l~v  161 (232)
                      .+.|.|
T Consensus        84 ~~~l~V   89 (91)
T d1tnna_          84 EFTLTI   89 (91)
T ss_dssp             EEEEEC
T ss_pred             EEEEEE
Confidence            555554

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=1.1e-13  Score=82.86  Aligned_cols=83  Identities=25%  Similarity=0.424  Sum_probs=67.6

Q ss_pred             CceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEE
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l  159 (232)
                      ....+.+|+.+.|.|.+.+ +++.+.|++++..+....+...  ..+.|.|.++..+|.|.|.|.+.|..+...+..+.|
T Consensus        11 ~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L   89 (96)
T d1l6za2          11 TNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL   89 (96)
T ss_dssp             SCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEE
T ss_pred             CceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEE
Confidence            3456778999999999866 5678999999998866555443  346899999999999999999999888755667888


Q ss_pred             EEEecc
Q psy15206        160 KVEFAP  165 (232)
Q Consensus       160 ~v~~~p  165 (232)
                      .|.++|
T Consensus        90 ~V~~~P   95 (96)
T d1l6za2          90 DIIFDP   95 (96)
T ss_dssp             EECCSC
T ss_pred             EEEcCC
Confidence            888776

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.50  E-value=6.8e-14  Score=84.78  Aligned_cols=68  Identities=22%  Similarity=0.388  Sum_probs=57.9

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC----------eEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE----------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|+|||..+..+.          ...|.+.++...|+|.|+|.|.
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   85 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV   85 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEE
Confidence            5777778888889999999999999999999999999998876433          4567777888899999999873

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.49  E-value=1.3e-13  Score=82.70  Aligned_cols=78  Identities=23%  Similarity=0.517  Sum_probs=63.0

Q ss_pred             ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc-----EEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-----TIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      ...+..|+.+.|.|.+.|.|.|.+.|+++|..+....+     .....++|.|.++..+|.|.|+|.+.|..|. ....+
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~   92 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTY   92 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEE-EEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCE-EEEEE
Confidence            34677899999999999999999999999988754321     1223468999999999999999999999886 55666


Q ss_pred             EEEE
Q psy15206        158 EVKV  161 (232)
Q Consensus       158 ~l~v  161 (232)
                      .|.|
T Consensus        93 ~l~V   96 (97)
T d3dara1          93 HLDV   96 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6655

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.2e-13  Score=79.72  Aligned_cols=78  Identities=28%  Similarity=0.427  Sum_probs=61.9

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE-EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT-IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+...... ....+.|.|.++..+|.|.|.|.+.|..|. ....+.+.|.
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~-~~~~~~v~V~   89 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-LEKGIQVEIY   89 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCE-EEEEEEEEEE
Confidence            45568999999999999999999999987765433221 123457999999999999999999999886 6666676664

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4.2e-14  Score=89.74  Aligned_cols=120  Identities=19%  Similarity=0.275  Sum_probs=70.8

Q ss_pred             cCCCeeecC----CCcceEeecCCeEEEEEEecCCCCCeEEEEeCcEeeeeEEEEeeeecCceeecCCcEEecCCCCceE
Q psy15206         10 DTPPVILNN----STQLSVAKEGQSVQLECHAEGHPIPTISWRRNFKRLGRLHLAIPYTSPEAQVDTPPVILNNSPQLSV   85 (232)
Q Consensus        10 ~~~P~i~~~----~~~~~~~~~G~~v~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~   85 (232)
                      ++||+|...    .+..+.+.+|++++|.|.+.|.|.+.+.|++++.............    ....             
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~----~~~~-------------   64 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPD----APED-------------   64 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCC----CCCC-------------
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeee----cccc-------------
Confidence            578998543    3678889999999999999999999999998654332100000000    0000             


Q ss_pred             eecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE----EeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         86 AKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT----IFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                                     .......|...........+.    ......|.|.++..+|+|.|+|.+.|..|. ....+.|.|
T Consensus        65 ---------------~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V  128 (130)
T d1gxea_          65 ---------------TGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQVNLTVKV  128 (130)
T ss_dssp             ---------------CCCSSCCCCSCCCCCSCSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCE-EEEEEEEEE
T ss_pred             ---------------cccceeeecCCceeeccCceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCE-EEEEEEEEE
Confidence                           000000000000000000010    111246999999999999999999999887 556666665


Q ss_pred             E
Q psy15206        162 E  162 (232)
Q Consensus       162 ~  162 (232)
                      .
T Consensus       129 ~  129 (130)
T d1gxea_         129 I  129 (130)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.47  E-value=1.7e-13  Score=80.40  Aligned_cols=76  Identities=17%  Similarity=0.373  Sum_probs=59.4

Q ss_pred             eEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEEE
Q psy15206         84 SVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKVE  162 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~  162 (232)
                      ..+.+|+++.|.|.+.+ .|.+.+.|++++..+..    ...+..|.|.++..+|+|.|.|.+.|..+...+..+.+.|.
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~----~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~   85 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF----SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQ   85 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeecccccc----cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEe
Confidence            45778999999999865 45568999999977532    22356799999999999999999999876544556667665


Q ss_pred             e
Q psy15206        163 F  163 (232)
Q Consensus       163 ~  163 (232)
                      .
T Consensus        86 ~   86 (88)
T d2fcba2          86 A   86 (88)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.47  E-value=1.1e-13  Score=81.48  Aligned_cols=68  Identities=18%  Similarity=0.410  Sum_probs=54.6

Q ss_pred             ccEEEeccc-eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe----EEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQST-RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY----HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~----~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+. ...+.+|+++.|.|.+.|.|.|.+.|+|+|..+..+..    -.|.+.++...|+|.|.|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   74 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRAT   74 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEE
Confidence            466766654 45677899999999999999999999999998864422    136677888899999999874

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.46  E-value=3.3e-13  Score=79.27  Aligned_cols=76  Identities=20%  Similarity=0.418  Sum_probs=58.8

Q ss_pred             ceEeecCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         83 LSVAKEGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      ...+.+|+++.|.|.+.+ .|.+.+.|+++|..+.    ....++.|.|.++..+|+|.|.|.+.+..+...+..+.+.|
T Consensus        11 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~----~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV   86 (89)
T d1fnla2          11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRK----YFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI   86 (89)
T ss_dssp             CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEE----EEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeEccCCeEEEEEEecCCCCCcEEEEEEcccccc----eeccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEE
Confidence            345779999999999865 4556799999997753    23345679999999999999999999977654445566665


Q ss_pred             E
Q psy15206        162 E  162 (232)
Q Consensus       162 ~  162 (232)
                      .
T Consensus        87 ~   87 (89)
T d1fnla2          87 T   87 (89)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.46  E-value=6.3e-14  Score=83.01  Aligned_cols=69  Identities=14%  Similarity=0.245  Sum_probs=55.5

Q ss_pred             eccEEEec-cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec---CCCeEEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQ-STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV---NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~---~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++|.+... +.+..+..|+.+.|.|.+.|.|.|.+.|+|++....   ......|.+.++...|+|.|+|.|+
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   75 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAE   75 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEeeeeeeEEEeCCCCccCCEEEEEEEE
Confidence            45666654 678888999999999999999999999999765433   1233467888899999999999974

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.9e-13  Score=79.60  Aligned_cols=80  Identities=24%  Similarity=0.321  Sum_probs=63.7

Q ss_pred             ceEeecCCcEEEEeeeccCC-CCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206         83 LSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      ...+.+|+++.|.|.+.+.+ ...+.|+++|..+....    ..+.|.|.+++.+|+|.|.|.+.+..+...+..+.+.|
T Consensus         9 ~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~----~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V   84 (89)
T d1f2qa2           9 AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV   84 (89)
T ss_dssp             CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc----ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEE
Confidence            34577999999999997654 45799999998764322    34679999999999999999999987765667788888


Q ss_pred             EeccE
Q psy15206        162 EFAPI  166 (232)
Q Consensus       162 ~~~p~  166 (232)
                      ..+|+
T Consensus        85 ~~~Pr   89 (89)
T d1f2qa2          85 IKAPR   89 (89)
T ss_dssp             ECSCC
T ss_pred             EeCCC
Confidence            87763

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=2e-13  Score=82.35  Aligned_cols=78  Identities=37%  Similarity=0.637  Sum_probs=61.9

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc----EE--eeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ----TI--FTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKI  157 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~----~~--~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~  157 (232)
                      .++..|+.+.|.|.+.|.|.|.+.|++++..+.....    ..  ...+.|.|.++..+|.|.|.|.+.|..|. ....+
T Consensus        15 ~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~   93 (100)
T d1qz1a3          15 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE-QDASI   93 (100)
T ss_dssp             EETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEE-EEEEE
T ss_pred             EEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCE-EEEEE
Confidence            3556799999999999999999999999988753321    11  12468999999999999999999998887 55666


Q ss_pred             EEEEE
Q psy15206        158 EVKVE  162 (232)
Q Consensus       158 ~l~v~  162 (232)
                      .|.|.
T Consensus        94 ~l~V~   98 (100)
T d1qz1a3          94 HLKVF   98 (100)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77664

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.45  E-value=3.2e-13  Score=80.48  Aligned_cols=82  Identities=24%  Similarity=0.453  Sum_probs=63.8

Q ss_pred             cEEecCCCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCc-EEe--eCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQ-TIF--TGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        74 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~-~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      |.+. ..+....+.+|+.+.|.|.+.|.|.+ .+.|+++|..+..... ...  ..++|.|.++..+|.|.|.|.+.|..
T Consensus         3 P~i~-~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           3 PVLK-DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CEEC-CCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CEEE-ecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence            4443 35677888999999999999998866 6999999988754332 222  34689999999999999999999988


Q ss_pred             CCceeeE
Q psy15206        150 GRGARRK  156 (232)
Q Consensus       150 ~~~~~~~  156 (232)
                      |...+..
T Consensus        82 G~~~s~~   88 (94)
T d1biha1          82 GVASSRV   88 (94)
T ss_dssp             EEEECCC
T ss_pred             CEEEEEE
Confidence            7643333

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.45  E-value=5.8e-14  Score=83.58  Aligned_cols=68  Identities=18%  Similarity=0.214  Sum_probs=57.3

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC---------CeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND---------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+...+.+..+..|+++.|.|.+.|.|.|.+.|+++|..+..+         ....|.+.++...|+|.|+|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   78 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEE
Confidence            567766778888999999999999999999999999998766533         34567778888899999999874

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.2e-13  Score=83.46  Aligned_cols=67  Identities=10%  Similarity=0.095  Sum_probs=55.5

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe---------EEEEEeccccCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY---------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~---------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |.+...+.+..+..|+.+.|.|.+.|.|.+.+.|+|+|..+....+         ..|.+.++...|+|.|+|.|.
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   76 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVE   76 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEE
Confidence            4455567778889999999999999999999999999987764433         467777888899999999974

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=1.6e-12  Score=76.98  Aligned_cols=72  Identities=25%  Similarity=0.456  Sum_probs=59.7

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc--E-EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--T-IFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~--~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  . ...+++|.|.++...|+|.|.|.+.|..+.
T Consensus         7 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   81 (92)
T d1epfa2           7 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG   81 (92)
T ss_dssp             CCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGT
T ss_pred             cCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCC
Confidence            56677888999999999999999999999999988754332  2 234568999999999999999999986543

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.42  E-value=1.3e-12  Score=80.06  Aligned_cols=89  Identities=25%  Similarity=0.364  Sum_probs=64.5

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC----C--cEE-----------eeCCeEEECCCC
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN----G--QTI-----------FTGSTLQIPRIT  134 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~----~--~~~-----------~~~~~l~i~~~~  134 (232)
                      ..|.+....+...++..|+++.|.|.+.|.|.|.+.|++++......    .  ...           ...+.|.|.++.
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            35666554577889999999999999999999999999876432110    0  000           012479999999


Q ss_pred             CCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206        135 KEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus       135 ~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      .+|.|.|+|.+.|..|. ......|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~-~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGI-SFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCE-EEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCE-EEEEEEEEE
Confidence            99999999999999887 445556554

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3.3e-13  Score=81.39  Aligned_cols=69  Identities=20%  Similarity=0.499  Sum_probs=54.7

Q ss_pred             eccEEEecccee--eeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----------CeEEEEEeccccCCceEEEEe
Q psy15206        163 FAPIVTVQSTRI--GQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----------EYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       163 ~~p~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----------~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      .||.+...+...  .+..|+++.|.|.+.|.|.|.+.|+++|..+...           ....|.+.++...|+|.|.|.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            467776655543  4567999999999999999999999999877522           234677888899999999998


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus        82 a~   83 (100)
T d1qz1a3          82 AE   83 (100)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=1.6e-13  Score=81.37  Aligned_cols=67  Identities=15%  Similarity=0.255  Sum_probs=55.8

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC--------CeEEEEEeccccCCceEEEEecC
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND--------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~--------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.+...|.+..+..|+.+.|.|.+.|.|.|.+.|+|+|..+...        ....|.+.++...|+|.|.|.|.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   76 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR   76 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEE
Confidence            45666788889999999999999999999999999999876522        12357778889999999999874

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=1.2e-12  Score=78.40  Aligned_cols=82  Identities=27%  Similarity=0.428  Sum_probs=61.1

Q ss_pred             CCceEeecCCcEEEEeeeccCCC-CeEEEEeC-CeeeCCC-CcEEe-----eCCeEEECCCCCCCCeEEEEEeEeCCCCc
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPI-PTISWRRE-NNAILPN-GQTIF-----TGSTLQIPRITKEDRGAYYCVAQNGIGRG  152 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~-~~~~~~~-~~~~~-----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~  152 (232)
                      |....+..|+++.|.|.+.|.|. +.+.|+++ +..+... .+...     ..+.|.|.++..+|.|.|+|.+.|..|..
T Consensus         7 P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   86 (97)
T d1epfa1           7 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   86 (97)
T ss_dssp             SSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             CCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcE
Confidence            45567889999999999999875 68999985 4444322 22221     12479999999999999999999988865


Q ss_pred             eeeEEEEEEE
Q psy15206        153 ARRKIEVKVE  162 (232)
Q Consensus       153 ~~~~~~l~v~  162 (232)
                      ....+.+.|.
T Consensus        87 ~~~tv~l~V~   96 (97)
T d1epfa1          87 SEATVNVKIF   96 (97)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            5556666653

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.9e-13  Score=79.19  Aligned_cols=73  Identities=26%  Similarity=0.444  Sum_probs=59.8

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIEVK  160 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~  160 (232)
                      +...++.+|+.+.|.|.+.|.|.|.+.|++++..+....         .+.+++.+|+|.|.|.+.|..|. .+..+.|.
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~---------~~~~v~~~d~G~Y~C~A~N~~G~-~~~~~~l~   80 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG---------ESVTVTRDLEGTYLCRARSTQGE-VTREVTVN   80 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT---------SCEECCGGGCEEEEEEEEETTEE-EEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee---------eeeccccCCCCEEEEEEEcCCCE-EEEEEEEE
Confidence            466788899999999999999999999999987765432         23467889999999999999886 56677777


Q ss_pred             EEe
Q psy15206        161 VEF  163 (232)
Q Consensus       161 v~~  163 (232)
                      |..
T Consensus        81 V~~   83 (84)
T d2oz4a3          81 VLS   83 (84)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            754

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.9e-13  Score=79.58  Aligned_cols=62  Identities=23%  Similarity=0.457  Sum_probs=52.0

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC-----------eEEEEEeccccCCceEEEEecC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE-----------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~-----------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.++.+..|+.+.|.|.+.|.|.+.+.|+|+|..+....           ...|.+.++...|+|.|+|.|.
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   74 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   74 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEE
Confidence            3567788899999999999999999999999998875332           2356777888899999999985

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.41  E-value=6.1e-13  Score=77.28  Aligned_cols=67  Identities=12%  Similarity=0.245  Sum_probs=56.4

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCe-EEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +|.+.+.|....+.+|++++|+|.+.|.|.+. +.|+++|..+..+. ..+.+.++..+|+|.|+|++.
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~   72 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA-SSYFIDAATVNDSGEYRCQTN   72 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC-SEEEESSCCGGGCEEEEEECS
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc-eeeEecCCcccCCEEEEEEcc
Confidence            46677888888899999999999999998885 77889998876543 467788889999999999974

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8e-13  Score=80.35  Aligned_cols=92  Identities=21%  Similarity=0.324  Sum_probs=65.5

Q ss_pred             eecCCcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEe--------eCCeEEECCCCCCCCeE
Q psy15206         69 QVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIF--------TGSTLQIPRITKEDRGA  140 (232)
Q Consensus        69 ~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~~~g~  140 (232)
                      +|..||.+......    ..+....+.|.+.|.|.|.+.|++++..+........        ..+.|.|.++..+|.|.
T Consensus         1 tV~~PP~i~~~~~~----~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (105)
T d1wwca_           1 TVYYPPRVVSLEEP----ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN   76 (105)
T ss_dssp             CCCCCCCCCCCCCC----CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             CEEcCCeeEEeCCC----EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceE
Confidence            35666665432111    1344566888999999999999999998765543321        12469999999999999


Q ss_pred             EEEEeEeCCCCceeeEEEEEEEecc
Q psy15206        141 YYCVAQNGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       141 y~C~~~~~~~~~~~~~~~l~v~~~p  165 (232)
                      |+|.+.|..|. ....+.+.|..+|
T Consensus        77 Y~C~a~N~~G~-~~~~~~v~V~~~P  100 (105)
T d1wwca_          77 YTLIAKNPLGT-ANQTINGHFLKEP  100 (105)
T ss_dssp             EEEEEEETTEE-EEEEEEECCSCCC
T ss_pred             EEEEEEcCCCE-EEEEEEEEEEeCC
Confidence            99999999887 5566666665544

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.39  E-value=7.4e-14  Score=82.71  Aligned_cols=63  Identities=11%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC---------CeEEEEEeccccCCceEEEEecC
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND---------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..|.++.+..|+++.|.|.+.|.|.|.+.|+++|..+..+         ....|.+.++...|+|.|.|.|.
T Consensus         4 ~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   75 (91)
T d1tnna_           4 TKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   75 (91)
T ss_dssp             BCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECB
T ss_pred             eCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEE
Confidence            3567788899999999999999999999999998766533         34567777888899999999984

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.7e-12  Score=78.42  Aligned_cols=78  Identities=18%  Similarity=0.283  Sum_probs=62.6

Q ss_pred             cCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee---------CCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         88 EGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT---------GSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~---------~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      .++...+.|.+.|.|.|.+.|++++..+.........         .+.|.|.+++..|.|.|+|.+.|..|. ....+.
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~   93 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQIS   93 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCE-EEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCE-EEEEEE
Confidence            5667789999999999999999999988655433221         236999999999999999999999888 567777


Q ss_pred             EEEEeccE
Q psy15206        159 VKVEFAPI  166 (232)
Q Consensus       159 l~v~~~p~  166 (232)
                      +.|...|-
T Consensus        94 v~V~~~P~  101 (103)
T d1wwbx_          94 AHFMGWPG  101 (103)
T ss_dssp             ECCSCCCC
T ss_pred             EEEEeCCC
Confidence            77766553

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.38  E-value=2.6e-13  Score=80.90  Aligned_cols=68  Identities=21%  Similarity=0.293  Sum_probs=56.1

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecC--------CCeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVN--------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~--------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+...|.+..+..|+.+.|.|.+.|.|.| .+.|++||..+..        .....|.+.++..+|+|.|+|.|.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   78 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE   78 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEE
Confidence            4677778888899999999999999999876 6999999877642        223467778888899999999874

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.38  E-value=6.6e-13  Score=79.51  Aligned_cols=86  Identities=26%  Similarity=0.484  Sum_probs=62.6

Q ss_pred             CcEEecCCCCceEeecC---CcEEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEe-eCCeEEECCCCCCCCeEEEEEeE
Q psy15206         73 PPVILNNSPQLSVAKEG---QSVQLECHAEGHPIPTISWRRENNAILPNG--QTIF-TGSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~-~~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      +|.+.. .+....+..|   +.+.|.|.+.|.|.|.+.|++++..+....  .... .+..|.|..+..+|.|.|.|.+.
T Consensus         4 ~P~f~~-~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1           4 GPVFEE-QPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             EEEEEE-CCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             CCEEEE-eCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence            455544 4555555554   789999999999999999999998875432  2222 34467778899999999999999


Q ss_pred             eCCCCceeeEEEE
Q psy15206        147 NGIGRGARRKIEV  159 (232)
Q Consensus       147 ~~~~~~~~~~~~l  159 (232)
                      |..|...+..+.|
T Consensus        83 N~~G~~~S~~a~L   95 (97)
T d1cs6a1          83 NARGTVVSREASL   95 (97)
T ss_dssp             ETTEEEECCCEEE
T ss_pred             ECCCEEEEEEEEE
Confidence            9988644444444

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3.4e-13  Score=79.95  Aligned_cols=68  Identities=13%  Similarity=0.153  Sum_probs=57.9

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec-------CCCeEEEEEeccccCCce-EEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV-------NDEYHSISNFGTSEGTTG-SLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~-------~~~~~~~~~~~~~~~d~g-~Y~C~~~  231 (232)
                      .|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+.       ......|.+.+++..|.| .|+|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~   77 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAE   77 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEE
Confidence            4778888888889999999999999999999999999986543       335568888899999999 6999974

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2e-13  Score=80.78  Aligned_cols=68  Identities=10%  Similarity=0.113  Sum_probs=54.2

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCC-CeEEEeeCCEEecCCCe------EEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPH-PILYWAKDGEIVVNDEY------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~g~~~~~~~~------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+...+....+..|+++.|.|.+.+.|+ ++|.|+|+|..+....+      -.|.+.++..+|+|.|+|.|.
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRA   80 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESS
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEEC
Confidence            466666677788889999999999988775 58999999877654433      257777888999999999874

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.38  E-value=1.3e-12  Score=78.15  Aligned_cols=61  Identities=16%  Similarity=0.140  Sum_probs=51.7

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC-----------CeEEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND-----------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~-----------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.+..+..|+++.|.|.+.|.|.+.+.|+|+|..+...           ....|.+.++..+|+|.|+|.|.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   81 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD   81 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEE
Confidence            45677889999999999999999999999999887532           22467888889999999999985

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.1e-13  Score=77.64  Aligned_cols=67  Identities=13%  Similarity=0.274  Sum_probs=52.7

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCe-EEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPI-LYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+.+.|....+.+|++++|.|.+.+.|.+. +.|+++|..+.... ..+.+..++.+|+|+|.|+|.
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~v~~~d~G~Y~C~a~   68 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN-SSLNIVNAKFEDSGEYKCQHQ   68 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS-SEEEECSCCGGGCEEEEEECT
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeeccc-ceeEECCCChhhCCcEEEEec
Confidence            36677788778889999999999999998875 77899998776544 457778889999999999874

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.37  E-value=1.1e-12  Score=76.43  Aligned_cols=67  Identities=13%  Similarity=0.387  Sum_probs=53.6

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+.+.|....+.+|++++|.|.+.+.|.+ .+.|++||..+..... .+.+..+..+|+|.|+|.+.
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~~-~l~i~~v~~~dsG~Y~C~a~   71 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQ-PSYRFKANNNDSGEYTCQTG   71 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCCS-SEEEEECCGGGCEEEEEECT
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccccc-ceEEeeccccCCcEEEEECC
Confidence            3556777877889999999999999998876 5999999998865432 34455677899999999874

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.37  E-value=4.2e-13  Score=80.42  Aligned_cols=69  Identities=17%  Similarity=0.290  Sum_probs=53.6

Q ss_pred             eccEEEeccceeeeecc---CeEEEEEEeecCCCCeEEEeeCCEEecCCC--------eEEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALH---HDMDLDCHIEAYPHPILYWAKDGEIVVNDE--------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g---~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~--------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ++|.+...|.+..+..|   +++.|.|.+.|.|.|.+.|++||..+....        ...+.+..+..+|+|.|+|.|+
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~   82 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVAT   82 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEE
Confidence            46777777877766655   789999999999999999999998875332        2344455567789999999974

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.4e-12  Score=77.13  Aligned_cols=71  Identities=20%  Similarity=0.274  Sum_probs=57.3

Q ss_pred             CCCceEeecCCcEEEEeeeccCCC-CeEEEEeCCeeeCCCCcEE-eeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPI-PTISWRRENNAILPNGQTI-FTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~-~~~~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .+....+.+|+++.|.|.+.+.++ +.+.|++++..+....+.. ..+..|.|.++..+|+|.|+|.+.+..+
T Consensus        12 ~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   84 (93)
T d1n26a1          12 ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPA   84 (93)
T ss_dssp             CTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSCS
T ss_pred             CCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCccc
Confidence            455677888999999999988665 5899999998876554433 3467899999999999999999987543

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=3.4e-12  Score=78.21  Aligned_cols=83  Identities=17%  Similarity=0.211  Sum_probs=63.4

Q ss_pred             CCCceEeecCCcEEEEeeeccCC---CCeEEEEeCCeeeCCCC---cEEe----------eCCeEEECCCCCCCCeEEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP---IPTISWRRENNAILPNG---QTIF----------TGSTLQIPRITKEDRGAYYC  143 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~~~~~---~~~~----------~~~~l~i~~~~~~~~g~y~C  143 (232)
                      .+....+..|+++.|.|.+.|.|   .|.+.|++++.......   +...          ....|.|.+++..|.|.|.|
T Consensus        10 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (110)
T d2avga1          10 RPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRC   89 (110)
T ss_dssp             CCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEE
T ss_pred             CCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEE
Confidence            56778899999999999999887   46899999875432111   1111          12369999999999999999


Q ss_pred             EeEeCCCCceeeEEEEEEEe
Q psy15206        144 VAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       144 ~~~~~~~~~~~~~~~l~v~~  163 (232)
                      .+.|..|. ....+.|.|..
T Consensus        90 ~a~N~~G~-~~~~~~L~V~~  108 (110)
T d2avga1          90 EVSTKDKF-DCSNFNLTVHE  108 (110)
T ss_dssp             EEEETTEE-EEEEEEEEEES
T ss_pred             EEEECCCe-EEEEEEEEEEe
Confidence            99999887 56677777754

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.3e-13  Score=77.00  Aligned_cols=58  Identities=10%  Similarity=0.071  Sum_probs=47.9

Q ss_pred             eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +..+.+|++++|.|.+.|.|.|.+.|++++..+..+. ..+.+.++...|+|.|.|.|+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~~-~~l~i~~v~~~DsG~Y~C~a~   65 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG-KTLSVSQLELQDSGTWTCTVL   65 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEES-SEEEESSCCGGGCEEEEEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceeee-eeeeeeecccccccEEEEEEE
Confidence            4467899999999999999999999999876554332 345677888999999999984

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.3e-13  Score=78.86  Aligned_cols=57  Identities=16%  Similarity=0.181  Sum_probs=47.7

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.+..+.+|+.+.|.|.+.|.|.|.+.|+|+|..+......    ..++..|+|.|.|.|+
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~~~----~~v~~~d~G~Y~C~A~   67 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES----VTVTRDLEGTYLCRAR   67 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSC----EECCGGGCEEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeeeee----eccccCCCCEEEEEEE
Confidence            56678889999999999999999999999999877655432    2456799999999984

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.34  E-value=1.9e-12  Score=75.78  Aligned_cols=61  Identities=13%  Similarity=0.150  Sum_probs=48.2

Q ss_pred             cceeeeeccCeEEEEEEeecC-CCCeEEEeeCCEEecC-CCeEEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAY-PHPILYWAKDGEIVVN-DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~g~~~~~-~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +....+.+|+.++|.|.+.+. |.+.+.|+|||..+.. .....+.+..++.+|+|.|.|.|.
T Consensus         7 ~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~~~~~l~i~~v~~~dsG~Y~C~a~   69 (88)
T d2fcba2           7 TPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDPNFSIPQANHSHSGDYHCTGN   69 (88)
T ss_dssp             CSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEESSCCEEEETTCCGGGCEEEEEEEE
T ss_pred             CCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccccccccccCccCHHHCCeEEEEEE
Confidence            334457799999999999654 5668999999988753 234467778889999999999874

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.5e-13  Score=80.58  Aligned_cols=79  Identities=20%  Similarity=0.318  Sum_probs=59.7

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE--EeeCCeEEECCCCCCCCe-EEEEEeEeCCCCceeeE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT--IFTGSTLQIPRITKEDRG-AYYCVAQNGIGRGARRK  156 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~~l~i~~~~~~~~g-~y~C~~~~~~~~~~~~~  156 (232)
                      .+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......  ......|.|.++..+|.| .|+|.+.|..|. ....
T Consensus         8 ~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~-~~~s   86 (92)
T d2ifga1           8 QVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGR-AEVS   86 (92)
T ss_dssp             ECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEE-CCEE
T ss_pred             eCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcCCCE-EEEE
Confidence            344567789999999999999999999999998765322111  122357999999999999 799999999886 3333


Q ss_pred             EEE
Q psy15206        157 IEV  159 (232)
Q Consensus       157 ~~l  159 (232)
                      +.|
T Consensus        87 ~~l   89 (92)
T d2ifga1          87 VQV   89 (92)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            333

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.9e-12  Score=78.49  Aligned_cols=83  Identities=19%  Similarity=0.266  Sum_probs=61.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCC-CCeEEEEeCCeeeCC---CCcEE-ee-C----CeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILP---NGQTI-FT-G----STLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~~~---~~~~~-~~-~----~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .+....+..|+++.|.|.+.|.| .|.+.|++++..+..   ..... .. +    ..|.|.++..+|.|.|.|.+.|..
T Consensus         9 ~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   88 (104)
T d2aw2a1           9 RQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQS   88 (104)
T ss_dssp             TTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCC
Confidence            45567888999999999999988 489999998765421   11111 11 1    259999999999999999999988


Q ss_pred             CCceeeEEEEEEE
Q psy15206        150 GRGARRKIEVKVE  162 (232)
Q Consensus       150 ~~~~~~~~~l~v~  162 (232)
                      |......+.+.|.
T Consensus        89 G~~~s~~~~l~V~  101 (104)
T d2aw2a1          89 NLIESHSTTLYVT  101 (104)
T ss_dssp             EEEECCCEEEEEE
T ss_pred             CeEEEEEEEEEEE
Confidence            7644445566553

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.33  E-value=1.3e-12  Score=76.68  Aligned_cols=62  Identities=15%  Similarity=0.091  Sum_probs=47.6

Q ss_pred             ccceeeeeccCeEEEEEEeec-CCCCeEEEeeCCEEecCC-CeEEEEEeccccCCceEEEEecC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEA-YPHPILYWAKDGEIVVND-EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+....+.+|++++|.|.+.+ .|.+.+.|+|||..+... ....+.+.+++.+|+|.|.|.|.
T Consensus         8 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~~~~~l~I~~v~~~dsG~Y~C~a~   71 (89)
T d1fnla2           8 QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGL   71 (89)
T ss_dssp             ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEEE
T ss_pred             ECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceeccccccEECccceeccceEEEEEE
Confidence            344456789999999999874 455689999999876532 23356677888999999999974

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.33  E-value=9.2e-13  Score=78.85  Aligned_cols=58  Identities=17%  Similarity=0.363  Sum_probs=49.2

Q ss_pred             eeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC----------CeEEEEEeccccCCceEEEEecC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND----------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~----------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+..|+++.|.|.+.|.|.|.+.|+|||..+..+          ....|.+.++...|+|.|+|.|.
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   82 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE   82 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEE
Confidence            45678999999999999999999999999887532          23578888889999999999874

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.1e-12  Score=78.26  Aligned_cols=85  Identities=18%  Similarity=0.232  Sum_probs=63.4

Q ss_pred             CCCceEeecCCcEEEEeeeccCC---CCeEEEEeCCeeeC---CCCcEEe----------eCCeEEECCCCCCCCeEEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP---IPTISWRRENNAIL---PNGQTIF----------TGSTLQIPRITKEDRGAYYC  143 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~~---~~~~~~~----------~~~~l~i~~~~~~~~g~y~C  143 (232)
                      .+....+..|+.+.|.|.+.|.|   .|.+.|++++....   .......          ....|.|.++...|+|.|+|
T Consensus         6 ~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   85 (113)
T d2dava1           6 KPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRC   85 (113)
T ss_dssp             CCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEE
T ss_pred             CCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEE
Confidence            56678888999999999999987   47899999864321   1111110          12369999999999999999


Q ss_pred             EeEeCCCCceeeEEEEEEEecc
Q psy15206        144 VAQNGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       144 ~~~~~~~~~~~~~~~l~v~~~p  165 (232)
                      .+.|..|. ....+.|.|..++
T Consensus        86 ~a~N~~G~-~~~~~~L~V~~~~  106 (113)
T d2dava1          86 EVTYKDKF-DSCSFDLEVHEST  106 (113)
T ss_dssp             EEECSSCE-EEECCEEEEECCC
T ss_pred             EEEeCCCE-EEEEEEEEEEcCC
Confidence            99998887 5567777776543

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.2e-12  Score=77.72  Aligned_cols=73  Identities=22%  Similarity=0.469  Sum_probs=57.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCC------------CCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILP------------NGQTIFTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~------------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .+....+.+|+++.|.|.+.|.|.|.+.|++++..+..            ..+....+++|.|.++..+|.|.|.|.+.|
T Consensus        10 ~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   89 (105)
T d1nbqa1          10 SEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSE   89 (105)
T ss_dssp             SCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEE
T ss_pred             CCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEE
Confidence            44556788999999999999999999999987644311            112233456899999999999999999999


Q ss_pred             CCCCc
Q psy15206        148 GIGRG  152 (232)
Q Consensus       148 ~~~~~  152 (232)
                      ..|..
T Consensus        90 ~~G~~   94 (105)
T d1nbqa1          90 EGGNS   94 (105)
T ss_dssp             TTSSC
T ss_pred             CCCCE
Confidence            88773

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.8e-11  Score=73.79  Aligned_cols=72  Identities=21%  Similarity=0.479  Sum_probs=57.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeC------------CCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAIL------------PNGQTIFTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~------------~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      ......+.+|+++.|.|.+.+.|.+.+.|++.+....            ...+....+++|.|.++..+|.|.|.|.+.|
T Consensus         7 ~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n   86 (102)
T d1f97a1           7 AQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSE   86 (102)
T ss_dssp             SCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEE
T ss_pred             cCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEE
Confidence            4555778899999999999999999999998654321            1122334456899999999999999999999


Q ss_pred             CCCC
Q psy15206        148 GIGR  151 (232)
Q Consensus       148 ~~~~  151 (232)
                      ..|.
T Consensus        87 ~~g~   90 (102)
T d1f97a1          87 EGGQ   90 (102)
T ss_dssp             TTSS
T ss_pred             CCCC
Confidence            8876

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=4.8e-12  Score=75.68  Aligned_cols=65  Identities=14%  Similarity=0.318  Sum_probs=50.8

Q ss_pred             EEeccceeeeeccCeEEEEEEeecCCC-CeEEEee-CCEEecC-----------CCeEEEEEeccccCCceEEEEecC
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAYPH-PILYWAK-DGEIVVN-----------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~-~g~~~~~-----------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.+.|....+..|+++.|.|.+.|.|+ +.|.|++ +|..+..           .....|.+.+++..|+|.|+|.|+
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~   80 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVT   80 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEE
Confidence            345567778889999999999999985 6899999 4444432           223567788889999999999984

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=4.3e-12  Score=74.64  Aligned_cols=62  Identities=11%  Similarity=0.173  Sum_probs=49.6

Q ss_pred             ccceeeeeccCeEEEEEEee-cCCCCeEEEeeCCEEecCCC----eEEEEEeccccCCceEEEEecC
Q psy15206        170 QSTRIGQALHHDMDLDCHIE-AYPHPILYWAKDGEIVVNDE----YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~g~~~~~~~----~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+....+..|+++.|.|.+. +.|.+.+.|+|+|..+....    ...|.+.++...|+|.|+|.|+
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   74 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGS   74 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEE
Confidence            35567788999999999997 67788999999887654321    2367788899999999999974

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.5e-12  Score=79.02  Aligned_cols=63  Identities=14%  Similarity=0.282  Sum_probs=49.9

Q ss_pred             eccceeeeeccCeEEEEEEeecCC-CCeEEEeeCCEEec--------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYP-HPILYWAKDGEIVV--------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~g~~~~--------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+....+..|+++.|.|.+.|.| .|.+.|+|++..+.              ....+.|.+.++...|+|.|.|.|.
T Consensus         8 ~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~   85 (104)
T d2aw2a1           8 KRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSAN   85 (104)
T ss_dssp             CTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             ecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEE
Confidence            345667788999999999999998 48999999875331              1123468888999999999999974

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.6e-12  Score=75.52  Aligned_cols=60  Identities=15%  Similarity=0.195  Sum_probs=49.1

Q ss_pred             ceeeeeccCeEEEEEEee-cCCCCeEEEeeCCEEec----CCCeEEEEEeccccCCceEEEEecC
Q psy15206        172 TRIGQALHHDMDLDCHIE-AYPHPILYWAKDGEIVV----NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~g~~~~----~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ....+..|+++.|.|.+. |.|.+.|.|++++..+.    ......|.+.+++.+|+|.|+|.|+
T Consensus        11 ~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~As   75 (90)
T d1gsma1          11 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGS   75 (90)
T ss_dssp             SEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEE
Confidence            445677899999999874 78899999999765432    3456788999999999999999985

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.8e-12  Score=77.01  Aligned_cols=80  Identities=18%  Similarity=0.317  Sum_probs=60.3

Q ss_pred             EeecCCcEE---EEeeeccCCCCeEEEEeCCeeeCCCCcEEee-----------CCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         85 VAKEGQSVQ---LECHAEGHPIPTISWRRENNAILPNGQTIFT-----------GSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        85 ~~~~g~~~~---l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~-----------~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .+..|....   +.|.+.|.|.|.+.|++++..+.........           .+.|.|.++...|.|.|.|.+.|..|
T Consensus         8 ~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G   87 (107)
T d1he7a_           8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (107)
T ss_dssp             CCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             EECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC
Confidence            333444444   5558899999999999999987654432211           13599999999999999999999998


Q ss_pred             CceeeEEEEEEEecc
Q psy15206        151 RGARRKIEVKVEFAP  165 (232)
Q Consensus       151 ~~~~~~~~l~v~~~p  165 (232)
                      . ....+.+.+..+|
T Consensus        88 ~-~~~~i~v~v~~~P  101 (107)
T d1he7a_          88 Q-ASASIMAAFMDNP  101 (107)
T ss_dssp             E-EEEEEEECCCSCT
T ss_pred             E-EEEEEEEEEEcCC
Confidence            7 6677777777666

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.3e-12  Score=75.01  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=53.4

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC-eEEEeeCCEE----ec-----------CCCeEEEEEeccc-cCCceEE
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP-ILYWAKDGEI----VV-----------NDEYHSISNFGTS-EGTTGSL  226 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~W~~~g~~----~~-----------~~~~~~~~~~~~~-~~d~g~Y  226 (232)
                      ||.+...+....+.+|+.+.|.|.+.|.|.+ .+.|+|++..    +.           ......|.+.++. ..|+|.|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y   81 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY   81 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE
Confidence            6788888888889999999999999999988 6999986521    11           2234567777777 4799999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      .|.|.
T Consensus        82 ~C~A~   86 (101)
T d3b5ha1          82 RCNGT   86 (101)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99984

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=6.6e-12  Score=73.61  Aligned_cols=62  Identities=23%  Similarity=0.157  Sum_probs=48.7

Q ss_pred             ccceeeeeccCeEEEEEEeecCC-CCeEEEeeCCEEecCC-CeEEEEEeccccCCceEEEEecC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYP-HPILYWAKDGEIVVND-EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+....+.+|+.++|.|.+.+.+ ...+.|+|||..+... ....+.+..++.+|+|+|+|.|.
T Consensus         6 q~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~i~~~~~~dsG~Y~C~a~   69 (89)
T d1f2qa2           6 QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGK   69 (89)
T ss_dssp             EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEEEEE
T ss_pred             eCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccccceEEEeeeeeecCcEEEEEEE
Confidence            34445678999999999997664 4479999999987643 33567777889999999999874

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.9e-11  Score=73.31  Aligned_cols=82  Identities=22%  Similarity=0.272  Sum_probs=63.8

Q ss_pred             CCceEeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCC----CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceee
Q psy15206         81 PQLSVAKEGQSVQLECHAE-GHPIPTISWRRENNAILP----NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARR  155 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~----~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~  155 (232)
                      +......+|+.+.|.|.+. +.+.+.+.|++++..+..    ..+....++.|.|.++...|+|.|+|.+.|..|. ...
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~-~~~   87 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYC-LRI   87 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEE-EEE
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCe-EEE
Confidence            4445677899999999875 578889999998865432    2234556789999999999999999999998776 555


Q ss_pred             EEEEEEEe
Q psy15206        156 KIEVKVEF  163 (232)
Q Consensus       156 ~~~l~v~~  163 (232)
                      .+.|.|..
T Consensus        88 ~~~L~V~~   95 (101)
T d1iray1          88 KISAKFVE   95 (101)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEe
Confidence            66776653

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.6e-11  Score=74.75  Aligned_cols=85  Identities=21%  Similarity=0.346  Sum_probs=61.7

Q ss_pred             cEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEE----------------eeCCeEEECCCCCCC
Q psy15206         74 PVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTI----------------FTGSTLQIPRITKED  137 (232)
Q Consensus        74 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~~  137 (232)
                      |.+.........+..|+.+.|.|.+.+.|.+.+.|+++|..+.......                ...+.|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            3344323333456679999999999999999999999998764332110                012379999999999


Q ss_pred             Ce-EEEEEeEeCCCCceeeEEEE
Q psy15206        138 RG-AYYCVAQNGIGRGARRKIEV  159 (232)
Q Consensus       138 ~g-~y~C~~~~~~~~~~~~~~~l  159 (232)
                      .| .|+|.+.|..|. ....+.|
T Consensus        82 ~g~~Y~C~A~N~~G~-~~~~i~L  103 (107)
T d1iray3          82 YKHPFTCFAKNTHGI-DAAYIQL  103 (107)
T ss_dssp             GSSCEEEEEECSSCE-EEEEEEE
T ss_pred             CCcEEEEEEEeCCCe-EEEEEEE
Confidence            99 599999999887 4444444

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.6e-11  Score=72.34  Aligned_cols=68  Identities=18%  Similarity=0.469  Sum_probs=55.4

Q ss_pred             ceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc--EEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ...+.+|+++.|.|.+.+ +.+.+.|++++..+.....  ....+++|.|.++..+|+|.|+|.+.|..+.
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~   75 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKN   75 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSS
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCC
Confidence            356789999999999987 6679999999988754332  2234568999999999999999999997665

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.28  E-value=4.6e-12  Score=77.52  Aligned_cols=68  Identities=16%  Similarity=0.300  Sum_probs=52.3

Q ss_pred             ccEEEec-cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec----------------------CCCeEEEEEecccc
Q psy15206        164 APIVTVQ-STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV----------------------NDEYHSISNFGTSE  220 (232)
Q Consensus       164 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~----------------------~~~~~~~~~~~~~~  220 (232)
                      +|.+... |.+..+..|+++.|.|.+.|.|.|.|.|+|++....                      ......|.+.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            4555543 677889999999999999999999999998653311                      11235688888899


Q ss_pred             CCceEEEEecC
Q psy15206        221 GTTGSLQCKVP  231 (232)
Q Consensus       221 ~d~g~Y~C~~~  231 (232)
                      .|+|.|+|.|.
T Consensus        84 ~D~G~Y~C~a~   94 (109)
T d2fdbp2          84 EDAGEYTCLAG   94 (109)
T ss_dssp             GGCEEEEEEEE
T ss_pred             HHCeEEEEEEE
Confidence            99999999973

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.2e-12  Score=74.75  Aligned_cols=61  Identities=15%  Similarity=0.291  Sum_probs=50.4

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC-----------CCeEEEEEeccccCCceEEEEecC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN-----------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~-----------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+..+..|+++.|.|.+ +.|.+.+.|+|+|..+..           +..+.|.+.++..+|+|.|.|.|.
T Consensus         6 ~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   77 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTT   77 (90)
T ss_dssp             CCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEET
T ss_pred             CCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEe
Confidence            4567788999999999998 568889999999987642           234577888889999999999874

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=1.3e-11  Score=75.54  Aligned_cols=78  Identities=26%  Similarity=0.461  Sum_probs=57.7

Q ss_pred             EeecCCcEEEEeeec-cCCCCeEEEEeCCeeeCCCCcEE------------eeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         85 VAKEGQSVQLECHAE-GHPIPTISWRRENNAILPNGQTI------------FTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .+..|+.+.|.|.+. |.|.+.+.|++++..+.......            ...+.|.|.+++.+|.|.|+|.+.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            466899999999975 78999999999988764332111            12347999999999999999999998876


Q ss_pred             ce-eeEEEEEEE
Q psy15206        152 GA-RRKIEVKVE  162 (232)
Q Consensus       152 ~~-~~~~~l~v~  162 (232)
                      .. +..+.+.|.
T Consensus        93 ~~~s~~v~l~V~  104 (110)
T d1f97a2          93 AMRSEAAHMDAV  104 (110)
T ss_dssp             CEECCCEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            43 334555554

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.9e-12  Score=73.58  Aligned_cols=58  Identities=14%  Similarity=0.269  Sum_probs=48.2

Q ss_pred             eeeeccCeEEEEEEeecCCCCeEEEeeCCEEec------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+..|+++.|.|.+.|.|.|.+.|++++..+.      ......|.+.++..+|+|.|+|.|+
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~   74 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTAT   74 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEE
Confidence            345689999999999999999999999765443      2345678889999999999999984

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=9.2e-12  Score=73.85  Aligned_cols=58  Identities=17%  Similarity=0.248  Sum_probs=48.3

Q ss_pred             eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC----------CeEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND----------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~----------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+..|+.+.|.|.+ +.|.+.+.|+|||..+..+          ..+.|.+.++...|+|.|+|.|.
T Consensus        15 ~~~v~~G~~v~l~c~v-~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_          15 AYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             EEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CEEECcCCeEEEEEEE-CCCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            4467899999999998 4588899999999887532          34678888999999999999874

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.3e-11  Score=74.29  Aligned_cols=81  Identities=21%  Similarity=0.383  Sum_probs=58.8

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeC----C--CCcEEe----eCCeEEECCCC-CCCCeEEEEEeEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAIL----P--NGQTIF----TGSTLQIPRIT-KEDRGAYYCVAQN  147 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~----~--~~~~~~----~~~~l~i~~~~-~~~~g~y~C~~~~  147 (232)
                      .+....+.+|+.+.|.|.+.|.|.+ .+.|++++....    .  ..++..    ....|.|.++. ..|.|.|.|.+.|
T Consensus         8 ~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N   87 (101)
T d3b5ha1           8 VKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTS   87 (101)
T ss_dssp             SCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEE
T ss_pred             cCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEEEEEEEE
Confidence            4566778899999999999998877 699998753321    1  111211    12379999998 5799999999999


Q ss_pred             CCCCceeeEEEEEE
Q psy15206        148 GIGRGARRKIEVKV  161 (232)
Q Consensus       148 ~~~~~~~~~~~l~v  161 (232)
                      ..|. ....+.|.|
T Consensus        88 ~~G~-~~~~~~L~V  100 (101)
T d3b5ha1          88 SKGS-DQAIITLRV  100 (101)
T ss_dssp             TTEE-EEEEEEEEE
T ss_pred             CCCE-EEEEEEEEE
Confidence            9887 455556554

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2e-11  Score=72.75  Aligned_cols=87  Identities=22%  Similarity=0.290  Sum_probs=59.6

Q ss_pred             CcEEecCCCCceEeecCCcEEEEeeeccCCCCeEEEEe--CCeeeCCCCc-EEee----CCeEEECCCCCCCCeEEEEEe
Q psy15206         73 PPVILNNSPQLSVAKEGQSVQLECHAEGHPIPTISWRR--ENNAILPNGQ-TIFT----GSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        73 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~--~~~~~~~~~~-~~~~----~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      +|.+.  .+....+..|+++.|.|.+.|.|.|.+.|++  .+........ ....    .++|.|.++..+|.|.|+|.+
T Consensus         2 ~P~f~--~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (96)
T d2c9aa1           2 TPHFL--RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI   79 (96)
T ss_dssp             SCEEC--CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCeec--ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEE
Confidence            35554  3667889999999999999998877644332  2222211111 1111    246999999999999999999


Q ss_pred             EeCCCCceeeEEEEEE
Q psy15206        146 QNGIGRGARRKIEVKV  161 (232)
Q Consensus       146 ~~~~~~~~~~~~~l~v  161 (232)
                      .|..|...+....|.|
T Consensus        80 ~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          80 RTEGGVGISNYAELVV   95 (96)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEEE
Confidence            9998875555456655

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=3.9e-11  Score=72.01  Aligned_cols=68  Identities=18%  Similarity=0.335  Sum_probs=56.1

Q ss_pred             eEeecCCcEEEEe------eeccCCCCeEEEEeCCeeeCCCC-cEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         84 SVAKEGQSVQLEC------HAEGHPIPTISWRRENNAILPNG-QTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        84 ~~~~~g~~~~l~C------~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ..+..|....|.|      .+.+.|.|.+.|++++..+.... .....++.|.|.++..+|+|.|+|.+.+..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            4566899999999      45678889999999999886544 34556789999999999999999999986553

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.25  E-value=6.6e-12  Score=76.11  Aligned_cols=71  Identities=23%  Similarity=0.341  Sum_probs=56.5

Q ss_pred             CCceEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCC--CcEEe--eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPN--GQTIF--TGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~--~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...  .+...  .++.|.|.++..+|.|.|+|.+.|..+.
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~   86 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDF   86 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCC
Confidence            345678899999999997 67888999999998765322  22222  3568999999999999999999997765

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.24  E-value=2.1e-11  Score=70.56  Aligned_cols=65  Identities=26%  Similarity=0.380  Sum_probs=52.6

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCe-EEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .+....+.+|+++.|.|.+.+.+.+. +.|++++..+..      ....|.|.++..+|+|.|+|.+.+...
T Consensus        11 ~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1          11 EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             ESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             CCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee------cceeeEecCCcccCCEEEEEEccCCCc
Confidence            45567788999999999999988775 667888776532      345799999999999999999886544

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=5.9e-12  Score=77.16  Aligned_cols=58  Identities=16%  Similarity=0.255  Sum_probs=46.1

Q ss_pred             eeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCC-----------------CeEEEEEeccccCCceEEEEecC
Q psy15206        174 IGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVND-----------------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~-----------------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+..|+++.|.|.+ .|.|.+.|.|+|+|..+...                 ....+.+.+++.+|+|.|+|.|.
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~   87 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQ   87 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEE
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEE
Confidence            357789999999998 48999999999998776421                 12256677888899999999984

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-11  Score=74.84  Aligned_cols=67  Identities=10%  Similarity=0.230  Sum_probs=52.8

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCC---CCeEEEeeCCEEec------------------CCCeEEEEEeccccCCc
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYP---HPILYWAKDGEIVV------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~g~~~~------------------~~~~~~~~~~~~~~~d~  223 (232)
                      +.+...|.+..+..|++++|.|.+.|.|   .|.|.|+|++....                  ....+.|.+.++...|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            3456678888899999999999999998   57899999864221                  11235688889999999


Q ss_pred             eEEEEecC
Q psy15206        224 GSLQCKVP  231 (232)
Q Consensus       224 g~Y~C~~~  231 (232)
                      |.|.|.|+
T Consensus        85 G~Y~C~a~   92 (110)
T d2avga1          85 GGYRCEVS   92 (110)
T ss_dssp             EEEEEEEE
T ss_pred             cEEEEEEE
Confidence            99999984

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.8e-11  Score=71.80  Aligned_cols=69  Identities=10%  Similarity=0.189  Sum_probs=54.7

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeec-CCCC--eEEEeeCCEEecC------CCeEEEEEeccccCCceEEEEecC
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEA-YPHP--ILYWAKDGEIVVN------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~~~W~~~g~~~~~------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|+.+.+.+....+..|+.++|.|.+.| .|.+  .+.|++++..+..      .....+.+..+...|.|.|+|+|+
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~   80 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTE   80 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEE
Confidence            4677888888778889999999999986 5655  5889999987752      224466777778899999999984

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.20  E-value=2.8e-11  Score=70.23  Aligned_cols=73  Identities=22%  Similarity=0.351  Sum_probs=56.3

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCC-eEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIP-TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      .+....+.+|+.+.|.|.+.+.+.+ .+.|+++|..+...      ...|.|.++..+|+|.|.|.+.+..++   ..+.
T Consensus        10 ~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~------~~~l~i~~v~~~dsG~Y~C~a~ns~~S---~~v~   80 (85)
T d2fcba1          10 EPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTSLS---DPVH   80 (85)
T ss_dssp             ESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC------CSSEEEEECCGGGCEEEEEECTTSBCC---CCEE
T ss_pred             CCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccc------ccceEEeeccccCCcEEEEECCCCccc---ccEE
Confidence            4555678899999999999887766 58899998876432      356899999999999999998875433   3345


Q ss_pred             EEE
Q psy15206        159 VKV  161 (232)
Q Consensus       159 l~v  161 (232)
                      |.|
T Consensus        81 l~V   83 (85)
T d2fcba1          81 LTV   83 (85)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.6e-11  Score=73.10  Aligned_cols=55  Identities=16%  Similarity=0.320  Sum_probs=45.4

Q ss_pred             eccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe--------------EEEEEeccccCCceEEEEecC
Q psy15206        177 ALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY--------------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~--------------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..++...+.|.+.|.|.|++.|+|||..+..+.+              ..|.+..++..|+|.|+|.|.
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   82 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAK   82 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEe
Confidence            3577788999999999999999999998865432              246677788899999999974

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.2e-11  Score=69.88  Aligned_cols=66  Identities=20%  Similarity=0.326  Sum_probs=51.8

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc-E--Eee--CCeEEECCCCCCCCeEEEEEeEe
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-T--IFT--GSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~--~~~--~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      .....+.+|+.+.|.|.+. .|.+.+.|+++|..+..... .  ...  ...|.|.++...|+|.|+|.+.+
T Consensus        13 ~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n   83 (94)
T d1pd6a_          13 EPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGG   83 (94)
T ss_dssp             CSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETT
T ss_pred             CCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEee
Confidence            3445678999999999984 58889999999998865432 2  112  23699999999999999999865

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.2e-12  Score=77.00  Aligned_cols=68  Identities=18%  Similarity=0.282  Sum_probs=51.2

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecCCC----------------eEEEEEeccccCCceEE
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVNDE----------------YHSISNFGTSEGTTGSL  226 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~~~----------------~~~~~~~~~~~~d~g~Y  226 (232)
                      ||.+........+..|+.++|.|.+ .|.|.+.+.|+|+|..+....                ...+.+.++...|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            4444433444567889999999997 589999999999987764221                23566778888999999


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      +|.|+
T Consensus        82 ~C~a~   86 (104)
T d1nbqa2          82 SCEAR   86 (104)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99974

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.7e-11  Score=75.43  Aligned_cols=63  Identities=13%  Similarity=0.222  Sum_probs=49.7

Q ss_pred             eccceeeeeccCeEEEEEEeecCC---CCeEEEeeCCEEec------------------CCCeEEEEEeccccCCceEEE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYP---HPILYWAKDGEIVV------------------NDEYHSISNFGTSEGTTGSLQ  227 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~g~~~~------------------~~~~~~~~~~~~~~~d~g~Y~  227 (232)
                      ..|.+..+..|++++|.|.+.|.|   .|.|.|+|++....                  ....+.|.+.++...|+|.|+
T Consensus         5 ~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (113)
T d2dava1           5 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYR   84 (113)
T ss_dssp             SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEE
T ss_pred             ECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEE
Confidence            356778899999999999999998   57899999863211                  112356888899999999999


Q ss_pred             EecC
Q psy15206        228 CKVP  231 (232)
Q Consensus       228 C~~~  231 (232)
                      |.|.
T Consensus        85 C~a~   88 (113)
T d2dava1          85 CEVT   88 (113)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9874

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.1e-11  Score=75.02  Aligned_cols=69  Identities=28%  Similarity=0.498  Sum_probs=54.9

Q ss_pred             eEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCCCcE-----------EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         84 SVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNGQT-----------IFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~-----------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ..+..|+.+.|.|.+ .|.|.+.+.|++++..+......           ....+.|.|.++..+|.|.|+|.+.|..|.
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   91 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT   91 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence            456789999999997 47899999999998876433211           112357899999999999999999998886


Q ss_pred             c
Q psy15206        152 G  152 (232)
Q Consensus       152 ~  152 (232)
                      .
T Consensus        92 ~   92 (104)
T d1nbqa2          92 P   92 (104)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.17  E-value=4e-11  Score=71.39  Aligned_cols=60  Identities=13%  Similarity=0.176  Sum_probs=48.1

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe-------EEEEEeccccCCceEEEEecC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY-------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~-------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+..+.+|++++|.|.+.+ +.+.+.|+++|..+....+       ..|.+.++..+|+|.|.|.|.
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~   76 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEIS   76 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEE
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEE
Confidence            34556889999999999866 5679999999998765432       356777788899999999984

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.9e-11  Score=73.26  Aligned_cols=68  Identities=15%  Similarity=0.253  Sum_probs=48.7

Q ss_pred             EEeccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe-------------EEEEEeccccCCceEEE
Q psy15206        161 VEFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY-------------HSISNFGTSEGTTGSLQ  227 (232)
Q Consensus       161 v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~-------------~~~~~~~~~~~d~g~Y~  227 (232)
                      |.+||.+.....   ...+....+.|.+.|.|.|.+.|+|||..+..+.+             ..|.+.++...|+|.|+
T Consensus         2 V~~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   78 (105)
T d1wwca_           2 VYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT   78 (105)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEE
T ss_pred             EEcCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEE
Confidence            445666533211   12345567888999999999999999998764432             24667778889999999


Q ss_pred             EecC
Q psy15206        228 CKVP  231 (232)
Q Consensus       228 C~~~  231 (232)
                      |.|+
T Consensus        79 C~a~   82 (105)
T d1wwca_          79 LIAK   82 (105)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9984

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-11  Score=75.30  Aligned_cols=67  Identities=16%  Similarity=0.319  Sum_probs=51.1

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec------------CCCe-----EEEEEeccccCCceEEE
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV------------NDEY-----HSISNFGTSEGTTGSLQ  227 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~------------~~~~-----~~~~~~~~~~~d~g~Y~  227 (232)
                      +.+...+....+.+|+++.|.|.+.|.|.|.+.|+|++..+.            ...+     ..|.+.++..+|+|.|.
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   84 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYT   84 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEE
Confidence            344555666778899999999999999999999999753321            0111     25778888999999999


Q ss_pred             EecC
Q psy15206        228 CKVP  231 (232)
Q Consensus       228 C~~~  231 (232)
                      |.|.
T Consensus        85 C~a~   88 (105)
T d1nbqa1          85 CMVS   88 (105)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9974

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.16  E-value=2.7e-12  Score=75.33  Aligned_cols=61  Identities=11%  Similarity=0.186  Sum_probs=50.3

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCC---------CeEEEEEeccccCCceEEEEecC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVND---------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+..+..|+++.|.|.+ +.|.+.+.|+|||..+..+         ..+.|.+.++...|+|.|.|.|.
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   76 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA   76 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCS
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEEC
Confidence            4567788999999999998 6788899999999877543         34567777888899999999874

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=6.1e-11  Score=68.27  Aligned_cols=73  Identities=23%  Similarity=0.353  Sum_probs=52.9

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCe-EEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCceeeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPT-ISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRGARRKIE  158 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~~  158 (232)
                      .+....+.+|+++.|.|.+.+.+.+. +.|++++..+..      .+..|.|.+++.+|+|.|.|.+.+...+   ..+.
T Consensus         7 ~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~v~~~d~G~Y~C~a~~s~~S---~~v~   77 (82)
T d1f2qa1           7 NPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVNAKFEDSGEYKCQHQQVNES---EPVY   77 (82)
T ss_dssp             ESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------CSSEEEECSCCGGGCEEEEEECTTSSCC---CCEE
T ss_pred             cCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec------ccceeEECCCChhhCCcEEEEecCCCCc---ccEE
Confidence            34556778999999999999988774 667888876543      2457999999999999999998875433   3445


Q ss_pred             EEE
Q psy15206        159 VKV  161 (232)
Q Consensus       159 l~v  161 (232)
                      |.|
T Consensus        78 l~V   80 (82)
T d1f2qa1          78 LEV   80 (82)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.1e-10  Score=70.87  Aligned_cols=67  Identities=15%  Similarity=0.363  Sum_probs=51.3

Q ss_pred             cEEEeccc-eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC---------------------eEEEEEeccccCC
Q psy15206        165 PIVTVQST-RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE---------------------YHSISNFGTSEGT  222 (232)
Q Consensus       165 p~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~---------------------~~~~~~~~~~~~d  222 (232)
                      |.+..... .+.+..|+++.|.|.+.|.|.|.+.|+++|..+....                     ...|.+.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            44444332 3556789999999999999999999999988764221                     2367778888899


Q ss_pred             ce-EEEEecC
Q psy15206        223 TG-SLQCKVP  231 (232)
Q Consensus       223 ~g-~Y~C~~~  231 (232)
                      .| .|+|.|.
T Consensus        82 ~g~~Y~C~A~   91 (107)
T d1iray3          82 YKHPFTCFAK   91 (107)
T ss_dssp             GSSCEEEEEE
T ss_pred             CCcEEEEEEE
Confidence            99 5999984

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.1e-11  Score=74.72  Aligned_cols=67  Identities=13%  Similarity=0.263  Sum_probs=51.6

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec------------CCC-----eEEEEEeccccCCceEEE
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV------------NDE-----YHSISNFGTSEGTTGSLQ  227 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~------------~~~-----~~~~~~~~~~~~d~g~Y~  227 (232)
                      |.+...+....+.+|+++.|.|.+.|.|.|.+.|++++....            ...     ...|.+.+++.+|+|.|.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            455666777888999999999999999999999998542210            011     124788899999999999


Q ss_pred             EecC
Q psy15206        228 CKVP  231 (232)
Q Consensus       228 C~~~  231 (232)
                      |.|+
T Consensus        82 C~a~   85 (102)
T d1f97a1          82 CMVS   85 (102)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9974

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=9.4e-11  Score=68.80  Aligned_cols=67  Identities=22%  Similarity=0.377  Sum_probs=53.2

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc--EEe-e---CCeEEECCCCCCCCeEEEEEeEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ--TIF-T---GSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~--~~~-~---~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      ......+..|+.+.|.|.+ +.|.+.+.|++++..+.....  ... .   ...|.|.++..+|+|.|.|.+.|
T Consensus         6 ~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1           6 QLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             CCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec
Confidence            4566788899999999998 467788999999988754432  222 1   23799999999999999999865

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.1e-11  Score=78.34  Aligned_cols=62  Identities=18%  Similarity=0.224  Sum_probs=50.1

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEecC--------------------------------------CCeE
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVN--------------------------------------DEYH  211 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~--------------------------------------~~~~  211 (232)
                      .+..+.+..|++++|.|.+.|.|.|.+.|++++..+..                                      ....
T Consensus        15 ~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~   94 (130)
T d1gxea_          15 IPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRS   94 (130)
T ss_dssp             CCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEE
T ss_pred             CCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEE
Confidence            35567888999999999999999999999997654321                                      1234


Q ss_pred             EEEEeccccCCceEEEEecC
Q psy15206        212 SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       212 ~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+.++..+|+|.|+|.|.
T Consensus        95 ~L~I~~v~~~D~G~Y~C~a~  114 (130)
T d1gxea_          95 IFTVEGAEKEDEGVYTVTVK  114 (130)
T ss_dssp             EEECSCCCTTTCEEEEEEEE
T ss_pred             EEEECcCChhcCEEEEEEEE
Confidence            68888899999999999984

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.2e-11  Score=72.62  Aligned_cols=72  Identities=17%  Similarity=0.249  Sum_probs=53.2

Q ss_pred             CCCceEeecCCcEEEEeeecc-CCCC--eEEEEeCCeeeCCCCcE-EeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEG-HPIP--TISWRRENNAILPNGQT-IFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~-~~~~--~~~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .+....+.+|+.+.|.|.+.| .|.+  .+.|++++..+...... ....+.|.|.....+|.|.|+|.+.|..+.
T Consensus        10 ~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~   85 (103)
T d1iama1          10 APLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRP   85 (103)
T ss_dssp             CCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGG
T ss_pred             eCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEEEeCCCC
Confidence            444456778999999999987 5555  57899999876321110 012346889999999999999999998765

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.13  E-value=1.3e-11  Score=74.81  Aligned_cols=60  Identities=12%  Similarity=0.146  Sum_probs=47.6

Q ss_pred             ceeeeeccCeEEEEEEe-ecCCCCeEEEeeCCEEec--C-------CCeEEEEEeccccCCceEEEEecC
Q psy15206        172 TRIGQALHHDMDLDCHI-EAYPHPILYWAKDGEIVV--N-------DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~--~-------~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+.+.+|+++.|.|.+ .+.|.+.+.|+|+|..+.  .       .....|.+.++..+|+|.|+|.|.
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   81 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFAT   81 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEE
Confidence            44678899999999997 789999999999986442  1       122356778888999999999874

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.9e-12  Score=80.13  Aligned_cols=94  Identities=29%  Similarity=0.453  Sum_probs=68.8

Q ss_pred             ceeecCCcEEecCCCCceEeecCCcEEEEeeeccCC-CCeEEEEeCCeeeCCCC--cEEe----e----CCeEEECCCCC
Q psy15206         67 EAQVDTPPVILNNSPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNAILPNG--QTIF----T----GSTLQIPRITK  135 (232)
Q Consensus        67 ~l~v~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~~~~~~--~~~~----~----~~~l~i~~~~~  135 (232)
                      +|+|..||.+..  +....+.+|+.+.|.|.+.+.+ .+.+.|++++..+....  ++..    .    .+.|.|.++..
T Consensus         1 TL~V~~Pp~i~~--~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~   78 (115)
T d2crya1           1 TLTVNGPPIISS--TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR   78 (115)
T ss_dssp             CCCCCSSCCEEE--ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             CeEEecCCEEec--CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch
Confidence            467888887653  3445677899999999999854 55799999988764322  1211    1    13699999999


Q ss_pred             CC-CeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206        136 ED-RGAYYCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       136 ~~-~g~y~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      .| .|.|+|.+.|..|. ....+.|.|..
T Consensus        79 ~D~~G~Y~C~A~N~~G~-~~~~~~L~V~~  106 (115)
T d2crya1          79 ADFQTIYNCTAWNSFGS-DTEIIRLKEQG  106 (115)
T ss_dssp             HHHHSCEEEEEECSSCE-EEEEECCCCSC
T ss_pred             hcCCeEEEEEEEECCCe-EEEEEEEEEEC
Confidence            99 69999999999987 56666666643

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=5.5e-11  Score=71.36  Aligned_cols=58  Identities=22%  Similarity=0.349  Sum_probs=47.9

Q ss_pred             eeeeccCeEEEEE------EeecCCCCeEEEeeCCEEecCCCe------EEEEEeccccCCceEEEEecC
Q psy15206        174 IGQALHHDMDLDC------HIEAYPHPILYWAKDGEIVVNDEY------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       174 ~~~~~g~~~~l~C------~~~~~p~~~~~W~~~g~~~~~~~~------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+..|.+..|.|      .+.+.|.|.+.|+|||..+..+..      ..|.+.++...|+|.|+|.|+
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   78 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHAS   78 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEE
Confidence            4577899999999      467899999999999998864432      257778889999999999984

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.4e-10  Score=70.17  Aligned_cols=62  Identities=11%  Similarity=0.237  Sum_probs=44.4

Q ss_pred             ccceeeeeccCeEEEEEEeec-CC--CCeEEEeeCCEEecCC-----------CeEEEEEeccccCCceEEEEecC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEA-YP--HPILYWAKDGEIVVND-----------EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~-~p--~~~~~W~~~g~~~~~~-----------~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+....+..|+.++|.|.+.| +|  .+.|.|+|+|..+..+           ....+.+......|.|+|+|+|.
T Consensus         8 ~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~   83 (106)
T d1zxqa1           8 TLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAV   83 (106)
T ss_dssp             EEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEE
T ss_pred             cCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEE
Confidence            344446778999999999976 44  4479999999877421           12345555566678889999984

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.08  E-value=2.8e-11  Score=70.89  Aligned_cols=69  Identities=12%  Similarity=0.071  Sum_probs=55.6

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEee----CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFT----GSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ......+.+|+++.|.|.+ +.|.+.+.|+++|..+....+....    ...|.|.++..+|+|.|+|.+.+..
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~   79 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK   79 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE
Confidence            4566788899999999997 5688899999999988665544332    2479999999999999999987643

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.4e-10  Score=70.29  Aligned_cols=60  Identities=12%  Similarity=0.252  Sum_probs=44.1

Q ss_pred             ceeeeeccCeEEE---EEEeecCCCCeEEEeeCCEEecCCCe----------------EEEEEeccccCCceEEEEecC
Q psy15206        172 TRIGQALHHDMDL---DCHIEAYPHPILYWAKDGEIVVNDEY----------------HSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       172 ~~~~~~~g~~~~l---~C~~~~~p~~~~~W~~~g~~~~~~~~----------------~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .++.+..|....+   .|.+.|.|.|.+.|++||..+..+..                ..|.+.++...|+|.|.|.|.
T Consensus         5 ~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            3444444555554   45889999999999999998764332                346677788899999999974

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=6e-11  Score=69.83  Aligned_cols=57  Identities=18%  Similarity=0.327  Sum_probs=46.1

Q ss_pred             eeeeccCeEEEEEEeecCCCCeEEEeeCCEEecCCC-------eEEEEEeccccCCceEEEEecC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE-------YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~-------~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ..+.+|+++.|.|.+.| +.|.+.|+++|..+..+.       .-.|.+.++..+|+|.|+|.|.
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~   70 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSE   70 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEE
T ss_pred             eeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEE
Confidence            46789999999999988 668999999987765321       1257788889999999999873

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.01  E-value=1e-10  Score=71.32  Aligned_cols=70  Identities=30%  Similarity=0.508  Sum_probs=53.7

Q ss_pred             eEeecCCcEEEEeee-ccCCCCeEEEEeCCeeeCCCC-------c-EEeeCCeEEECCCCCCCCe---EEEEEeEeCCCC
Q psy15206         84 SVAKEGQSVQLECHA-EGHPIPTISWRRENNAILPNG-------Q-TIFTGSTLQIPRITKEDRG---AYYCVAQNGIGR  151 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~-------~-~~~~~~~l~i~~~~~~~~g---~y~C~~~~~~~~  151 (232)
                      .++.+|+.+.|.|.+ .|.|.|.+.|++++..+....       . ....++.|.|.+++..|+|   .|.|.+.|..|.
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~   91 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD   91 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCC
Confidence            355689999999996 799999999999876543211       1 1233568999999888876   699999998877


Q ss_pred             ce
Q psy15206        152 GA  153 (232)
Q Consensus       152 ~~  153 (232)
                      ..
T Consensus        92 ~~   93 (111)
T d1biha2          92 EE   93 (111)
T ss_dssp             SC
T ss_pred             ce
Confidence            43

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.1e-10  Score=66.44  Aligned_cols=67  Identities=10%  Similarity=0.071  Sum_probs=48.6

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEE---eeCCEEe--------cC-CCeEEEEEeccccCCceEEEEecC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYW---AKDGEIV--------VN-DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W---~~~g~~~--------~~-~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .|.+. .+.+..+..|+++.|.|.+.|.|.|.+.|   .+++..+        .. .....|.+.++..+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            46665 57788899999999999999999886433   2232211        11 123468888999999999999873

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.1e-10  Score=70.55  Aligned_cols=68  Identities=16%  Similarity=0.220  Sum_probs=48.3

Q ss_pred             eEeecCCcEEEEeeecc-CC--CCeEEEEeCCeeeCCCCcEE------eeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         84 SVAKEGQSVQLECHAEG-HP--IPTISWRRENNAILPNGQTI------FTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~-~~--~~~~~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      ..+.+|+.+.|.|.+.| .|  .+.+.|++++..+.......      ...+.|.+.....+|.|.|+|.+.|..+.
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~   88 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMS   88 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGG
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCC
Confidence            45678999999999987 44  34799999998764221110      01235677777778888999999987654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=4.7e-11  Score=73.62  Aligned_cols=72  Identities=11%  Similarity=0.240  Sum_probs=53.1

Q ss_pred             EEEEeccEEEeccceeeeeccCeEEEEEEeecCC-CCeEEEeeCCEEecCCC---------------eEEEEEeccccCC
Q psy15206        159 VKVEFAPIVTVQSTRIGQALHHDMDLDCHIEAYP-HPILYWAKDGEIVVNDE---------------YHSISNFGTSEGT  222 (232)
Q Consensus       159 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~g~~~~~~~---------------~~~~~~~~~~~~d  222 (232)
                      |.|..||.+. .+....+..|+.+.|.|.+.+.| .+.+.|++++..+....               ...|.+.++...|
T Consensus         2 L~V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D   80 (115)
T d2crya1           2 LTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRAD   80 (115)
T ss_dssp             CCCCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHH
T ss_pred             eEEecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhc
Confidence            4456677765 34556778899999999999865 55799999987765321               1246667777788


Q ss_pred             -ceEEEEecC
Q psy15206        223 -TGSLQCKVP  231 (232)
Q Consensus       223 -~g~Y~C~~~  231 (232)
                       +|.|+|.|+
T Consensus        81 ~~G~Y~C~A~   90 (115)
T d2crya1          81 FQTIYNCTAW   90 (115)
T ss_dssp             HHSCEEEEEE
T ss_pred             CCeEEEEEEE
Confidence             799999974

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.1e-09  Score=63.30  Aligned_cols=58  Identities=12%  Similarity=0.241  Sum_probs=45.9

Q ss_pred             eeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec-------------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV-------------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~-------------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ......|++++|.|.. +.|.+.+.|++++..+.                   ......|.+.++..+|+|.|.|.+.
T Consensus         4 ~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~   80 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP   80 (93)
T ss_dssp             EEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEE
Confidence            3466789999999986 56788999999886652                   1223568888999999999999974

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=3.6e-08  Score=58.32  Aligned_cols=79  Identities=18%  Similarity=0.396  Sum_probs=55.3

Q ss_pred             eEeecCCcEEEEeeecc-CC-CCeEEEEeCCeeeCC----------CCc-EEeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         84 SVAKEGQSVQLECHAEG-HP-IPTISWRRENNAILP----------NGQ-TIFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~-~~-~~~~~W~~~~~~~~~----------~~~-~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      +....|+++.|.|.... .. ...+.|++++..+..          ..+ ....+++|.|.+++.+|+|.|.|.+.+..|
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g   84 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG   84 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCC
Confidence            45567999999996432 22 246999998766521          111 223457899999999999999999998877


Q ss_pred             Cc-eeeEEEEEEE
Q psy15206        151 RG-ARRKIEVKVE  162 (232)
Q Consensus       151 ~~-~~~~~~l~v~  162 (232)
                      .. ..+.+.|.|.
T Consensus        85 ~~~~~~~~~L~V~   97 (98)
T d1hnga1          85 TRILNKALDLRIL   97 (98)
T ss_dssp             CEEEEEEEEEEEE
T ss_pred             CEEEEEEEEEEEE
Confidence            63 3456666654

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=9.3e-09  Score=60.41  Aligned_cols=67  Identities=13%  Similarity=0.255  Sum_probs=49.6

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCC------------CcEEe--eCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPN------------GQTIF--TGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~------------~~~~~--~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +....|++++|.|... .|.+.+.|++++..+...            .+...  .+++|.|.+++.+|+|.|.|.+.+..
T Consensus         5 v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~   83 (93)
T d1ccza1           5 IYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (93)
T ss_dssp             EEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCC
Confidence            4567899999999864 577789999988665210            11111  24579999999999999999987765


Q ss_pred             CC
Q psy15206        150 GR  151 (232)
Q Consensus       150 ~~  151 (232)
                      +.
T Consensus        84 ~t   85 (93)
T d1ccza1          84 DT   85 (93)
T ss_dssp             SC
T ss_pred             cE
Confidence            43

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.5e-09  Score=64.85  Aligned_cols=59  Identities=12%  Similarity=0.128  Sum_probs=45.1

Q ss_pred             eeeeeccCeEEEEEEee-cCCCCeEEEeeCCEEec--C--C-----CeEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIE-AYPHPILYWAKDGEIVV--N--D-----EYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~-~~p~~~~~W~~~g~~~~--~--~-----~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ......|+.+.|.|.+. +.|.+.|.|+|+|..+.  .  .     ....|.+.++...|+|.|+|.|.
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   79 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVR   79 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEE
Confidence            34566799999999874 77889999999885432  1  1     12367778889999999999873

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.73  E-value=6.6e-10  Score=67.63  Aligned_cols=57  Identities=18%  Similarity=0.302  Sum_probs=40.9

Q ss_pred             eeeccCeEEEEEEe-ecCCCCeEEEeeCCEEecC-------------CCeEEEEEeccccCCce---EEEEecC
Q psy15206        175 GQALHHDMDLDCHI-EAYPHPILYWAKDGEIVVN-------------DEYHSISNFGTSEGTTG---SLQCKVP  231 (232)
Q Consensus       175 ~~~~g~~~~l~C~~-~~~p~~~~~W~~~g~~~~~-------------~~~~~~~~~~~~~~d~g---~Y~C~~~  231 (232)
                      .+.+|+++.|.|.+ .|.|.|.+.|+|++..+..             .....|.+.+++..|+|   .|.|.|.
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~   86 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK   86 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEE
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEE
Confidence            45689999999996 8999999999997644321             11224555566666555   7999984

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=6.5e-08  Score=60.09  Aligned_cols=82  Identities=22%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             ceEeecCCcEEEEeeeccC---CCCeEEEEeCCeee----C-------------CCCcEEee-------CCeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGH---PIPTISWRRENNAI----L-------------PNGQTIFT-------GSTLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~---~~~~~~W~~~~~~~----~-------------~~~~~~~~-------~~~l~i~~~~~  135 (232)
                      .+.+..|+++.|.|.....   ....+.|++.+...    .             ...+....       +.+|.|.+++.
T Consensus        11 ~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   90 (126)
T d1pkoa_          11 PIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRF   90 (126)
T ss_dssp             CEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCG
T ss_pred             CEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEch
Confidence            3677789999999987532   23458999864321    0             00111111       23799999999


Q ss_pred             CCCeEEEEEeEeCCCCceeeEEEEEEEecc
Q psy15206        136 EDRGAYYCVAQNGIGRGARRKIEVKVEFAP  165 (232)
Q Consensus       136 ~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p  165 (232)
                      .|+|.|.|.+.+..+. ....+.|.|..|+
T Consensus        91 ~D~G~Y~C~v~~~~~~-~~~~v~L~V~~P~  119 (126)
T d1pkoa_          91 SDEGGYTCFFRDHSYQ-EEAAVELKVEDPF  119 (126)
T ss_dssp             GGCEEEEEEEEETTEE-EEEEEEEEEECTT
T ss_pred             hHCeEEEEEEEECCCE-EEEEEEEEEeCCC
Confidence            9999999999987554 5566778887643

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.7e-07  Score=54.88  Aligned_cols=65  Identities=8%  Similarity=0.052  Sum_probs=49.8

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec--------CCCeEEEEEeccccCCceEEEEec
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV--------NDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~--------~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      +|.+...|.. .+..|++|+|.|.... ....+.|+|+|....        ......+.+.+++..|+|.|+|..
T Consensus         4 KPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y   76 (95)
T d1olla1           4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY   76 (95)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeeCCC-cccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEe
Confidence            5677777755 4779999999998743 355799999986432        234467888899999999999974

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=9.5e-08  Score=58.83  Aligned_cols=68  Identities=19%  Similarity=0.281  Sum_probs=52.5

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE------Eec--------------------------CCC
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE------IVV--------------------------NDE  209 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~------~~~--------------------------~~~  209 (232)
                      +|.+...|..+.+..|++++|.|...+.....+.|+|.  |.      .+.                          .+.
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            36677788888899999999999988877778999872  11      110                          123


Q ss_pred             eEEEEEeccccCCceEEEEecC
Q psy15206        210 YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       210 ~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.|.+.++..+|+|.|.|.+.
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEe
Confidence            4688999999999999999863

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=3.3e-08  Score=59.48  Aligned_cols=74  Identities=20%  Similarity=0.342  Sum_probs=49.1

Q ss_pred             eecCCcEEEEeeeccCCCCeEEEEeCCeeeCC-------------------CCcE-EeeCCeEEECCCCCCCCeEEEEEe
Q psy15206         86 AKEGQSVQLECHAEGHPIPTISWRRENNAILP-------------------NGQT-IFTGSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~-------------------~~~~-~~~~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      +.+|+++.|.|.........+.|++.......                   .++. ...+++|.|.+++.+|.|.|+|.+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v   90 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM   90 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEE
Confidence            45899999999854444567999985432100                   1121 223578999999999999999999


Q ss_pred             EeCCCCceeeEEEE
Q psy15206        146 QNGIGRGARRKIEV  159 (232)
Q Consensus       146 ~~~~~~~~~~~~~l  159 (232)
                      .+..+......+.|
T Consensus        91 ~~~~~~~~~~~v~L  104 (107)
T d1l6za1          91 TDENYRRTQATVRF  104 (107)
T ss_dssp             EETTEEECCCCEEE
T ss_pred             EECCCCEEEEEEEE
Confidence            87643323333344

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=9e-08  Score=56.55  Aligned_cols=69  Identities=16%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             EeccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC----------CCeE-EEEEeccccCCceEEEE
Q psy15206        162 EFAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN----------DEYH-SISNFGTSEGTTGSLQC  228 (232)
Q Consensus       162 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~----------~~~~-~~~~~~~~~~d~g~Y~C  228 (232)
                      ..+|.+.+.+.. ....|+.++|.|.+.|+.+.  .+.|.+||..+..          ++.| ..+......++.+.|+|
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            345666554322 24578889999999997554  5899999987641          2233 33334445567779999


Q ss_pred             ecC
Q psy15206        229 KVP  231 (232)
Q Consensus       229 ~~~  231 (232)
                      .|.
T Consensus        82 ~V~   84 (100)
T d1k5nb_          82 RVN   84 (100)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=8.8e-08  Score=56.13  Aligned_cols=66  Identities=17%  Similarity=0.250  Sum_probs=50.0

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec-----CCCeEEEEEeccccCCceEEEEec
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV-----NDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~-----~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      +|.+.+.|.. .+..|++|+|.|.........|.|+|+|....     ......+.+..++..|+|+|+|..
T Consensus         5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   75 (96)
T d1ucta2           5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYG   75 (96)
T ss_dssp             CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEE
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEE
Confidence            5777777754 68899999999986444445799999985322     234567888888999999999963

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.56  E-value=1.1e-07  Score=56.12  Aligned_cols=68  Identities=22%  Similarity=0.306  Sum_probs=44.4

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEE-EEEeccccCCceEEEE
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHS-ISNFGTSEGTTGSLQC  228 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~-~~~~~~~~~d~g~Y~C  228 (232)
                      .+|.+.+.+.. ....|+.++|.|.+.|+.++  .+.|++||..+..           +..|. .+...+...+.+.|+|
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            35666665433 34568889999999998554  6999999866531           12233 2223344466778999


Q ss_pred             ecC
Q psy15206        229 KVP  231 (232)
Q Consensus       229 ~~~  231 (232)
                      +|.
T Consensus        81 ~V~   83 (100)
T d1muja1          81 KVE   83 (100)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            984

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=4.3e-07  Score=52.72  Aligned_cols=65  Identities=11%  Similarity=0.206  Sum_probs=49.3

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEE-----ecCCCeEEEEEeccccCCceEEEEe
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI-----VVNDEYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~-----~~~~~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      .+|.+.+.|.. .+..|++|+|.|.... +...+.|+|+|..     ........+.+..++..|+|+|+|.
T Consensus         3 pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~   72 (93)
T d1olla2           3 DTPTLSVHPGP-EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCF   72 (93)
T ss_dssp             CCCEEEEESCS-EEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEE
T ss_pred             CCCEEEEeCCC-cccCCCcEEEEECCCC-CCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEE
Confidence            36777777764 5778999999999743 3557999998742     1234556788888899999999996

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=1.6e-07  Score=58.20  Aligned_cols=61  Identities=11%  Similarity=0.151  Sum_probs=43.2

Q ss_pred             cceeeeeccCeEEEEEEeecCC---CCeEEEeeCCEE----e-------c------------------CCCeEEEEEecc
Q psy15206        171 STRIGQALHHDMDLDCHIEAYP---HPILYWAKDGEI----V-------V------------------NDEYHSISNFGT  218 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~g~~----~-------~------------------~~~~~~~~~~~~  218 (232)
                      ...+.+..|++++|.|......   ...+.|++++..    +       .                  ..+++.|.+.++
T Consensus         9 ~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   88 (126)
T d1pkoa_           9 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV   88 (126)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEE
Confidence            3346778999999999875332   235899986421    0       0                  112578999999


Q ss_pred             ccCCceEEEEecC
Q psy15206        219 SEGTTGSLQCKVP  231 (232)
Q Consensus       219 ~~~d~g~Y~C~~~  231 (232)
                      +..|+|.|.|.+.
T Consensus        89 ~~~D~G~Y~C~v~  101 (126)
T d1pkoa_          89 RFSDEGGYTCFFR  101 (126)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             chhHCeEEEEEEE
Confidence            9999999999874

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=1.9e-07  Score=55.12  Aligned_cols=68  Identities=18%  Similarity=0.264  Sum_probs=43.5

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC----------CCeE-EEEEeccccCCceEEEEe
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN----------DEYH-SISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~----------~~~~-~~~~~~~~~~d~g~Y~C~  229 (232)
                      .+|.+.+.+.. ....|+.++|.|.+.|+.+.  .++|++||..+..          ++.| ..+.......+.+.|+|+
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~   81 (99)
T d1lk2b_           3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR   81 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEE
Confidence            45666554322 23467889999999997544  5999999987642          2222 222233444666789999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus        82 V~   83 (99)
T d1lk2b_          82 VK   83 (99)
T ss_dssp             EE
T ss_pred             EE
Confidence            83

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=8.9e-08  Score=56.70  Aligned_cols=65  Identities=12%  Similarity=0.140  Sum_probs=47.4

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEE--ec--------CCCeEEEEEeccccCCceEEEEec
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI--VV--------NDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~--~~--------~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      +|.+...|.. .+..|++|+|.|.+. .+...+.|+|+|..  ..        ......+.+.+++..|+|.|.|..
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y   81 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQY   81 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEE
Confidence            5777777764 577899999999874 34558999987631  11        123456778888999999999974

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.47  E-value=5e-07  Score=53.19  Aligned_cols=65  Identities=12%  Similarity=0.150  Sum_probs=46.8

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec--------CCCeEEEEEeccccCCceEEEEe
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV--------NDEYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~--------~~~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      .+|.+.+.|.. .+..|++|+|.|.... +...+.|+|+|....        ....+.+.+..++..|+|+|+|.
T Consensus         5 pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~   77 (99)
T d1nkra2           5 EKPSLSAQPGP-TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCF   77 (99)
T ss_dssp             CCCEEEEESCS-EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEE
T ss_pred             CCCEEEEeCCC-cccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEE
Confidence            36777777754 5778999999998743 355799999984321        23345556666677899999996

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=6.8e-07  Score=51.98  Aligned_cols=65  Identities=20%  Similarity=0.337  Sum_probs=41.0

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC------------CCeEE-EEEeccccCCceEEE
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN------------DEYHS-ISNFGTSEGTTGSLQ  227 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~------------~~~~~-~~~~~~~~~d~g~Y~  227 (232)
                      .+|.+.+.    ....++.++|.|.+.|+.+.  .+.|++||..+..            +..|. .........+...|+
T Consensus         3 vpP~V~v~----~~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~yt   78 (94)
T d1de4a1           3 VPPLVKVT----HHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYT   78 (94)
T ss_dssp             BCCEEEEE----EEECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEE
T ss_pred             CCCEEEEE----EcCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEE
Confidence            46666542    22346678999999996433  6999999988641            11222 222233446667899


Q ss_pred             EecC
Q psy15206        228 CKVP  231 (232)
Q Consensus       228 C~~~  231 (232)
                      |.|.
T Consensus        79 C~V~   82 (94)
T d1de4a1          79 CQVE   82 (94)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9974

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.1e-07  Score=53.75  Aligned_cols=65  Identities=20%  Similarity=0.331  Sum_probs=46.1

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      ..+..|++++|.|.........+.|+|+|...............+.|.+++..|+|.|.|.....
T Consensus        14 ~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          14 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            46778999999998643344568899988643322111112346889999999999999998654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=6.5e-07  Score=55.13  Aligned_cols=77  Identities=23%  Similarity=0.415  Sum_probs=50.0

Q ss_pred             eEeecCCcEEEEeeeccCCC----CeEEEEeCCeeeC---------------------CCCcEEee-------CCeEEEC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI----PTISWRRENNAIL---------------------PNGQTIFT-------GSTLQIP  131 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~----~~~~W~~~~~~~~---------------------~~~~~~~~-------~~~l~i~  131 (232)
                      +...+|+++.|.|.....+.    ..+.|++......                     ...+....       ..+|.|.
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   93 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT   93 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence            56678999999999754322    2488986321100                     00111111       2369999


Q ss_pred             CCCCCCCeEEEEEeEeCCCCceeeEEEEEE
Q psy15206        132 RITKEDRGAYYCVAQNGIGRGARRKIEVKV  161 (232)
Q Consensus       132 ~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v  161 (232)
                      +++.+|.|.|.|.+.+..+. ....+.|.|
T Consensus        94 ~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V  122 (124)
T d1eaja_          94 NLQLSDIGTYQCKVKKAPGV-ANKKIHLVV  122 (124)
T ss_dssp             SCCGGGCEEEEEEEEETTEE-EEEEEEEEE
T ss_pred             ccEEccCEEEEEEEEECCCe-EEeEEEEEE
Confidence            99999999999999886554 445555555

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.4e-07  Score=55.64  Aligned_cols=57  Identities=11%  Similarity=0.180  Sum_probs=42.8

Q ss_pred             eeeccCeEEEEEEeecCCCCeEEEeeCCEE--ec------------------------CCCeEEEEEeccccCCceEEEE
Q psy15206        175 GQALHHDMDLDCHIEAYPHPILYWAKDGEI--VV------------------------NDEYHSISNFGTSEGTTGSLQC  228 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~--~~------------------------~~~~~~~~~~~~~~~d~g~Y~C  228 (232)
                      ...+|++++|.|.........+.|++....  +.                        ....+.|.+.++..+|+|.|.|
T Consensus         5 ~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C   84 (97)
T d2nxyb1           5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC   84 (97)
T ss_dssp             EEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             EEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence            456899999999987666667999985321  10                        1124678899999999999999


Q ss_pred             ecC
Q psy15206        229 KVP  231 (232)
Q Consensus       229 ~~~  231 (232)
                      .+.
T Consensus        85 ~v~   87 (97)
T d2nxyb1          85 EVE   87 (97)
T ss_dssp             EET
T ss_pred             EEe
Confidence            873

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.41  E-value=5.6e-07  Score=54.51  Aligned_cols=65  Identities=15%  Similarity=0.271  Sum_probs=48.6

Q ss_pred             EEeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---e--------------------cCCCeEEEEEeccccC
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---V--------------------VNDEYHSISNFGTSEG  221 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~--------------------~~~~~~~~~~~~~~~~  221 (232)
                      +...|..+.+..|++++|.|...+.....+.|+|.  |..   +                    .....+.|.+.++..+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            34456677888999999999987765557999973  111   1                    1345678999999999


Q ss_pred             CceEEEEecC
Q psy15206        222 TTGSLQCKVP  231 (232)
Q Consensus       222 d~g~Y~C~~~  231 (232)
                      |+|.|.|.+.
T Consensus        83 Dsg~YyCa~~   92 (113)
T d2bnqd1          83 DSATYLCAVR   92 (113)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCcEEeEeEe
Confidence            9999999863

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.41  E-value=4.4e-07  Score=55.11  Aligned_cols=64  Identities=16%  Similarity=0.250  Sum_probs=48.4

Q ss_pred             EeccceeeeeccCeEEEEEEeecCCCCeEEEeeCC--E---Ee--------------------cCCCeEEEEEeccccCC
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG--E---IV--------------------VNDEYHSISNFGTSEGT  222 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g--~---~~--------------------~~~~~~~~~~~~~~~~d  222 (232)
                      ...|..+.+.+|++++|.|.........+.|+|..  .   .+                    .....+.|.+.++..+|
T Consensus         4 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~D   83 (114)
T d2cdea1           4 EQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSD   83 (114)
T ss_dssp             EEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGG
T ss_pred             EeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhh
Confidence            34566677889999999999877666679999731  1   11                    12356789999999999


Q ss_pred             ceEEEEecC
Q psy15206        223 TGSLQCKVP  231 (232)
Q Consensus       223 ~g~Y~C~~~  231 (232)
                      +|.|.|.+.
T Consensus        84 sg~Y~Ca~~   92 (114)
T d2cdea1          84 SASYICVVS   92 (114)
T ss_dssp             CSEEEEEEE
T ss_pred             Ccccceeee
Confidence            999999873

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.39  E-value=2.4e-06  Score=51.74  Aligned_cols=69  Identities=25%  Similarity=0.483  Sum_probs=48.2

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee------CCC------CcEEe------eCCeEEECCCCCCCCe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI------LPN------GQTIF------TGSTLQIPRITKEDRG  139 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~------~~~------~~~~~------~~~~l~i~~~~~~~~g  139 (232)
                      .|....+.+|++++|.|.........+.||+...  ..      ...      .++..      ...+|.|.+++.+|+|
T Consensus         6 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg   85 (114)
T d2cdea1           6 SPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSA   85 (114)
T ss_dssp             ECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCS
T ss_pred             eCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCc
Confidence            3566778899999999998765666799997431  10      000      01111      1237999999999999


Q ss_pred             EEEEEeEeC
Q psy15206        140 AYYCVAQNG  148 (232)
Q Consensus       140 ~y~C~~~~~  148 (232)
                      .|.|.+...
T Consensus        86 ~Y~Ca~~~~   94 (114)
T d2cdea1          86 SYICVVSDR   94 (114)
T ss_dssp             EEEEEEECS
T ss_pred             ccceeeecC
Confidence            999998764

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.1e-07  Score=52.66  Aligned_cols=77  Identities=18%  Similarity=0.138  Sum_probs=49.7

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc-----EEeeCCeEEECCCCCCCCeEEEEEeEeCCC-CceeeEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-----TIFTGSTLQIPRITKEDRGAYYCVAQNGIG-RGARRKI  157 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-~~~~~~~  157 (232)
                      ..+..|++++|.|.+. .+...+.|+++|........     .......+.|.+++..|.|.|.|...+... +..+..+
T Consensus        16 ~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl   94 (99)
T d1ucta1          16 PVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTL   94 (99)
T ss_dssp             SEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCE
T ss_pred             CceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCCCE
Confidence            3577899999999875 34557889887643211111     111234689999999999999999887543 2233444


Q ss_pred             EEEE
Q psy15206        158 EVKV  161 (232)
Q Consensus       158 ~l~v  161 (232)
                      .|.|
T Consensus        95 ~L~V   98 (99)
T d1ucta1          95 ELVV   98 (99)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            4443

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.38  E-value=8.4e-07  Score=53.12  Aligned_cols=68  Identities=25%  Similarity=0.409  Sum_probs=47.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eeeC------------CCCcEEe----eCCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAIL------------PNGQTIF----TGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y  141 (232)
                      .|..+.+.+|++++|.|.........+.||+..  ..+.            ...++..    ....|.|.++..+|+|.|
T Consensus         7 sP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~Y   86 (107)
T d1kcvl1           7 SPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADY   86 (107)
T ss_dssp             SCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceE
Confidence            456677889999999999876555679999742  1110            0111111    123799999999999999


Q ss_pred             EEEeEe
Q psy15206        142 YCVAQN  147 (232)
Q Consensus       142 ~C~~~~  147 (232)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1kcvl1          87 YCGQSY   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEecC
Confidence            998643

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.37  E-value=1e-06  Score=51.68  Aligned_cols=67  Identities=22%  Similarity=0.346  Sum_probs=38.8

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeE-EEEEeccccCCceEEEEe
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYH-SISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~-~~~~~~~~~~d~g~Y~C~  229 (232)
                      +|.+.+.+.. ....++..+|.|.+.|+.++  .+.|++||..+..           ++.| ..+.......+...|+|+
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~   82 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQ   82 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEE
Confidence            4555544332 23346677899999997655  5999999877632           1223 233334455777899999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus        83 V~   84 (98)
T d1d5mb1          83 VE   84 (98)
T ss_dssp             EE
T ss_pred             EE
Confidence            84

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.37  E-value=1.1e-06  Score=51.50  Aligned_cols=67  Identities=21%  Similarity=0.371  Sum_probs=42.5

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEE-EEEeccccCCceEEEEe
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHS-ISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~-~~~~~~~~~d~g~Y~C~  229 (232)
                      +|.+.+.+.. ....++.++|.|.+.|+.+.  .+.|++||..+..           +..|. .+...+...+...|+|.
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~   81 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCV   81 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEE
Confidence            4665554322 23457789999999998554  5999999987642           22232 22233444555689999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus        82 V~   83 (98)
T d1hdmb1          82 VE   83 (98)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.36  E-value=2.7e-06  Score=51.37  Aligned_cols=70  Identities=23%  Similarity=0.402  Sum_probs=48.7

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeC------CC------CcEEe------eCCeEEECCCCCCCCe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAIL------PN------GQTIF------TGSTLQIPRITKEDRG  139 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~------~~------~~~~~------~~~~l~i~~~~~~~~g  139 (232)
                      .|..+.+.+|+++.|.|...+.....+.||+.  ++.+.      ..      .+...      ....|.|.++..+|+|
T Consensus         6 ~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg   85 (113)
T d2bnqd1           6 IPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSA   85 (113)
T ss_dssp             SSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             eCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCc
Confidence            46667888999999999987665567999983  22110      00      01110      0137999999999999


Q ss_pred             EEEEEeEeCC
Q psy15206        140 AYYCVAQNGI  149 (232)
Q Consensus       140 ~y~C~~~~~~  149 (232)
                      .|.|.+....
T Consensus        86 ~YyCa~~~~~   95 (113)
T d2bnqd1          86 TYLCAVRPTS   95 (113)
T ss_dssp             EEEEEEEESS
T ss_pred             EEeEeEecCC
Confidence            9999987643

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.5e-06  Score=50.56  Aligned_cols=66  Identities=23%  Similarity=0.285  Sum_probs=42.2

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC----------CCeE-EEEEeccccCCceEEEEe
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN----------DEYH-SISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~----------~~~~-~~~~~~~~~~d~g~Y~C~  229 (232)
                      .||.+.+...   ...|+.++|.|.+.|+.+.  .+.|++||..+..          ++.| ..+.......+...|+|.
T Consensus         2 ~PP~V~v~~~---~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~   78 (94)
T d1t7va1           2 DPPSVVVTSH---QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCH   78 (94)
T ss_dssp             BCCEEEEEEE---ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEE
T ss_pred             cCCEeEEecc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEE
Confidence            3566655322   2357789999999997554  5999999977542          2222 333333344566689999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus        79 V~   80 (94)
T d1t7va1          79 VQ   80 (94)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5.2e-07  Score=53.09  Aligned_cols=64  Identities=23%  Similarity=0.411  Sum_probs=44.5

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeee--CC------------CCcEEe-------eCCeEEECCCCCCCCeEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAI--LP------------NGQTIF-------TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~--~~------------~~~~~~-------~~~~l~i~~~~~~~~g~y~  142 (232)
                      +...+|+++.|.|.........+.|++.....  ..            ..+...       .+.+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            34568999999999876666679999754321  00            001111       1236999999999999999


Q ss_pred             EEeEe
Q psy15206        143 CVAQN  147 (232)
Q Consensus       143 C~~~~  147 (232)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99864

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=3.8e-06  Score=50.09  Aligned_cols=68  Identities=22%  Similarity=0.345  Sum_probs=47.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee------------CCCCcEEee----CCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI------------LPNGQTIFT----GSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~------------~~~~~~~~~----~~~l~i~~~~~~~~g~y  141 (232)
                      .|....+.+|++++|.|...+.....+.||+..  ..+            ....++...    ...|.|.++..+|+|.|
T Consensus         7 sP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1ospl1           7 SSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATY   86 (107)
T ss_dssp             CCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEE
T ss_pred             eCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcE
Confidence            466677889999999998866555579999842  111            001122221    24799999999999999


Q ss_pred             EEEeEe
Q psy15206        142 YCVAQN  147 (232)
Q Consensus       142 ~C~~~~  147 (232)
                      .|.+..
T Consensus        87 yCa~~~   92 (107)
T d1ospl1          87 FCQQYW   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEeecc
Confidence            997653

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.34  E-value=2.1e-07  Score=54.88  Aligned_cols=56  Identities=14%  Similarity=0.190  Sum_probs=41.0

Q ss_pred             eeeccCeEEEEEEee-cCCC-CeEEEeeCCEEec----------C------CCeEEEEEeccccCCceEEEEec
Q psy15206        175 GQALHHDMDLDCHIE-AYPH-PILYWAKDGEIVV----------N------DEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~-~~p~-~~~~W~~~g~~~~----------~------~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      ....|++++|.|... .... ..|.|++++..+.          .      .....|.+.+.+.+|+|.|.|.+
T Consensus         6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v   79 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTV   79 (98)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEE
T ss_pred             EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEE
Confidence            456799999999642 2222 3699999887653          1      12246888899999999999997

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=1.9e-07  Score=55.98  Aligned_cols=57  Identities=12%  Similarity=0.034  Sum_probs=39.5

Q ss_pred             eeeccCeEEEEEEeecCCCCeEEEeeCCEE-----ec-----------C---------CCeEEEEEeccccCCceEEEEe
Q psy15206        175 GQALHHDMDLDCHIEAYPHPILYWAKDGEI-----VV-----------N---------DEYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~-----~~-----------~---------~~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      .+.+|+++.|.|.........+.|+|+...     +.           .         ..+..|.+.+++.+|+|.|.|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~   89 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD   89 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEE
Confidence            467999999999743333457999985321     10           0         1123577778899999999999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      +.
T Consensus        90 v~   91 (107)
T d1l6za1          90 MT   91 (107)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.34  E-value=1.7e-06  Score=51.00  Aligned_cols=68  Identities=26%  Similarity=0.394  Sum_probs=42.4

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEE-EEEeccccCCceEEEE
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHS-ISNFGTSEGTTGSLQC  228 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~-~~~~~~~~~d~g~Y~C  228 (232)
                      .+|.+.+.+.. ....|+..+|.|.+.|+.+.  .+.|++||..+..           ++.|. .+...+...+...|+|
T Consensus         4 v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC   82 (101)
T d1fnga1           4 VAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLPSTDDFYDC   82 (101)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECCCTTCCEEE
T ss_pred             cCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcCCCCCEEEE
Confidence            45666554322 23467788999999997443  6999999987642           22232 2222333355568999


Q ss_pred             ecC
Q psy15206        229 KVP  231 (232)
Q Consensus       229 ~~~  231 (232)
                      .|.
T Consensus        83 ~V~   85 (101)
T d1fnga1          83 EVD   85 (101)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.4e-06  Score=50.87  Aligned_cols=77  Identities=13%  Similarity=0.212  Sum_probs=50.7

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE---EeeCCeEEECCCCCCCCeEEEEEeEeCCC-CceeeEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT---IFTGSTLQIPRITKEDRGAYYCVAQNGIG-RGARRKIEV  159 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-~~~~~~~~l  159 (232)
                      ..+..|++++|.|... .....+.|+++|.........   ......+.|.+++..|.|.|.|...+... +..+..++|
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL   91 (95)
T d1olla1          13 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDL   91 (95)
T ss_dssp             SEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEE
T ss_pred             CcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCCccCCCCCEEE
Confidence            3567999999999874 345578899988643211100   11123689999999999999999876432 223445555


Q ss_pred             EE
Q psy15206        160 KV  161 (232)
Q Consensus       160 ~v  161 (232)
                      .|
T Consensus        92 ~V   93 (95)
T d1olla1          92 VV   93 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=1e-06  Score=52.52  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=46.4

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEEe---------------------cCCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEIV---------------------VNDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~~---------------------~~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|...+.....+.|+|.  |...                     .....+.|.+.++..+|+|.
T Consensus         6 QsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (106)
T d1i8ka_           6 QSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGD   85 (106)
T ss_dssp             EECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEE
Confidence            346667788999999999876655557999974  2111                     02345788899999999999


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |.|.+.
T Consensus        86 YyCa~~   91 (106)
T d1i8ka_          86 YYCLQS   91 (106)
T ss_dssp             EEEEEC
T ss_pred             EeEecC
Confidence            999753

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=1.3e-06  Score=52.18  Aligned_cols=62  Identities=11%  Similarity=0.195  Sum_probs=46.5

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEEe----c-----------------CCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEIV----V-----------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~~----~-----------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|.........+.|+|.  |...    .                 ....+.|.+.++..+|+|.
T Consensus         6 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~   85 (107)
T d1c5cl1           6 QSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFAD   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeE
Confidence            345666778999999999987766667999973  2211    0                 2345788899999999999


Q ss_pred             EEEec
Q psy15206        226 LQCKV  230 (232)
Q Consensus       226 Y~C~~  230 (232)
                      |.|.+
T Consensus        86 YyCa~   90 (107)
T d1c5cl1          86 YYCLQ   90 (107)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99975

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=8.8e-07  Score=52.87  Aligned_cols=67  Identities=24%  Similarity=0.411  Sum_probs=46.2

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeC------------CCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAIL------------PNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      |..+.+.+|++++|.|.........+.||+.  |..+.            ...++..    ....|.|.++..+|+|.|.
T Consensus         8 P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   87 (107)
T d1c5cl1           8 PSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEE
Confidence            5556778999999999987655667999973  32210            0111111    1237999999999999999


Q ss_pred             EEeEe
Q psy15206        143 CVAQN  147 (232)
Q Consensus       143 C~~~~  147 (232)
                      |.+.+
T Consensus        88 Ca~~~   92 (107)
T d1c5cl1          88 CLQYA   92 (107)
T ss_dssp             EEECS
T ss_pred             EecCc
Confidence            97653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=4.2e-07  Score=53.18  Aligned_cols=65  Identities=9%  Similarity=0.026  Sum_probs=48.2

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec--------CCCeEEEEEeccccCCceEEEEec
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV--------NDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~--------~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      +|.+...|.. .+..|++|+|.|... .+...|.++|+|....        ......+.+..++..|+|+|+|..
T Consensus         4 kP~Lsa~Ps~-~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y   76 (96)
T d1ugna1           4 KPTLWAEPGS-VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYY   76 (96)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeECCC-ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEE
Confidence            5677777764 477999999999973 3445799999886421        123457777888999999999974

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.31  E-value=7.7e-07  Score=52.91  Aligned_cols=67  Identities=27%  Similarity=0.444  Sum_probs=45.4

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee---C---------CCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI---L---------PNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~---~---------~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      +..+.+.+|++++|.|.........+.||+...  .+   .         ...++..    ....|.|.++..+|+|.|.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   84 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY   84 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence            345677899999999987665555789997421  11   0         0011111    1247999999999999999


Q ss_pred             EEeEe
Q psy15206        143 CVAQN  147 (232)
Q Consensus       143 C~~~~  147 (232)
                      |.+..
T Consensus        85 CA~~~   89 (103)
T d8faba1          85 CQAWD   89 (103)
T ss_dssp             EEEEE
T ss_pred             eeecC
Confidence            97654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.3e-06  Score=52.18  Aligned_cols=68  Identities=28%  Similarity=0.399  Sum_probs=46.8

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee------------CCCCcEEe----eCCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI------------LPNGQTIF----TGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~------------~~~~~~~~----~~~~l~i~~~~~~~~g~y  141 (232)
                      .|..+.+.+|++++|.|.........+.||+...  .+            ....++..    ....|.|.++..+|+|.|
T Consensus         7 ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~Y   86 (107)
T d1j1pl_           7 SPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEE
Confidence            3556778899999999997665556799997432  11            00112211    123799999999999999


Q ss_pred             EEEeEe
Q psy15206        142 YCVAQN  147 (232)
Q Consensus       142 ~C~~~~  147 (232)
                      .|...+
T Consensus        87 yCa~~~   92 (107)
T d1j1pl_          87 FCQQAN   92 (107)
T ss_dssp             EEEECS
T ss_pred             EEEcCC
Confidence            997643

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=4e-06  Score=48.83  Aligned_cols=54  Identities=22%  Similarity=0.441  Sum_probs=37.3

Q ss_pred             ccCeEEEEEEeec-CCCCeEEEeeCCEEecC----------CCeEEEEE-eccccCCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEA-YPHPILYWAKDGEIVVN----------DEYHSISN-FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~-~p~~~~~W~~~g~~~~~----------~~~~~~~~-~~~~~~d~g~Y~C~~~  231 (232)
                      .++.++|.|.+.| +|.+.+.|++||..+..          ++.|.+.. ..+...+...|+|.|.
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~~~~~~~~tC~V~   80 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIK   80 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEccCCccceEEEEEE
Confidence            5777899999987 68889999999877642          22333222 2234456679999873

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=9.1e-07  Score=52.80  Aligned_cols=67  Identities=19%  Similarity=0.352  Sum_probs=46.0

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeC------------CCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAIL------------PNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      |..+.+.+|++++|.|.........+.||+.  |..+.            ...++..    ....|.|.++..+|+|.|.
T Consensus         8 P~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (106)
T d1i8ka_           8 PASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYY   87 (106)
T ss_dssp             CSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEe
Confidence            5556778999999999876655567999974  22210            1112211    1236999999999999999


Q ss_pred             EEeEe
Q psy15206        143 CVAQN  147 (232)
Q Consensus       143 C~~~~  147 (232)
                      |....
T Consensus        88 Ca~~~   92 (106)
T d1i8ka_          88 CLQSF   92 (106)
T ss_dssp             EEECS
T ss_pred             EecCc
Confidence            97543

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=1.6e-06  Score=51.83  Aligned_cols=62  Identities=13%  Similarity=0.162  Sum_probs=46.0

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEEe---------------------cCCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEIV---------------------VNDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~~---------------------~~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|.........+.|+|.  |..+                     .....+.|.+.++..+|+|.
T Consensus         6 Q~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1j1pl_           6 QSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEE
Confidence            446667788999999999876555557999974  2111                     02345788899999999999


Q ss_pred             EEEec
Q psy15206        226 LQCKV  230 (232)
Q Consensus       226 Y~C~~  230 (232)
                      |.|.+
T Consensus        86 YyCa~   90 (107)
T d1j1pl_          86 YFCQQ   90 (107)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99975

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=2.4e-06  Score=51.72  Aligned_cols=64  Identities=13%  Similarity=0.300  Sum_probs=45.9

Q ss_pred             EEeccceeeeeccCeEEEEEEeecCC-CCeEEEeeC--CE-E--ec---------------------CCCeEEEEEeccc
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAYP-HPILYWAKD--GE-I--VV---------------------NDEYHSISNFGTS  219 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~--g~-~--~~---------------------~~~~~~~~~~~~~  219 (232)
                      +...|..+.+.+|++++|.|...+.. ...+.|+|.  |. .  +.                     ....+.|.+.++.
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            34557777889999999999875543 345889973  21 1  10                     1234678888899


Q ss_pred             cCCceEEEEec
Q psy15206        220 EGTTGSLQCKV  230 (232)
Q Consensus       220 ~~d~g~Y~C~~  230 (232)
                      .+|+|.|.|.+
T Consensus        82 ~~Dsg~YyCa~   92 (114)
T d3bp5a1          82 RNDSGIYLCGA   92 (114)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCCCeEEEEEE
Confidence            99999999976

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.30  E-value=1.5e-06  Score=52.73  Aligned_cols=69  Identities=23%  Similarity=0.311  Sum_probs=48.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee------C------CCCcEEee------CCeEEECCCCCCCCe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI------L------PNGQTIFT------GSTLQIPRITKEDRG  139 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~------~------~~~~~~~~------~~~l~i~~~~~~~~g  139 (232)
                      .+..+.+.+|++++|.|.........+.||+..  ..+      .      ...++...      ...|.|.+++.+|+|
T Consensus         7 ~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1lp9e1           7 TEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSA   86 (115)
T ss_dssp             CCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCE
T ss_pred             CCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCc
Confidence            456677889999999999876666679999742  111      0      01111111      236999999999999


Q ss_pred             EEEEEeEeC
Q psy15206        140 AYYCVAQNG  148 (232)
Q Consensus       140 ~y~C~~~~~  148 (232)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (115)
T d1lp9e1          87 LYYCALFLA   95 (115)
T ss_dssp             EEEEEEEEC
T ss_pred             cceEEEEcC
Confidence            999987654

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.30  E-value=2.6e-06  Score=50.00  Aligned_cols=68  Identities=25%  Similarity=0.304  Sum_probs=42.5

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEEE-EEeccccCCceEEEE
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHSI-SNFGTSEGTTGSLQC  228 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~~-~~~~~~~~d~g~Y~C  228 (232)
                      .+|.+.+.+.. ....|+..+|.|.+.|+.+.  .+.|++||..+..           ++.|.+ +.......+...|+|
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   82 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDC   82 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEE
Confidence            35655553322 24567888999999998554  5999999987642           122322 222333355568999


Q ss_pred             ecC
Q psy15206        229 KVP  231 (232)
Q Consensus       229 ~~~  231 (232)
                      +|.
T Consensus        83 ~V~   85 (99)
T d1uvqa1          83 KVE   85 (99)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.29  E-value=1.9e-06  Score=49.76  Aligned_cols=66  Identities=15%  Similarity=0.230  Sum_probs=40.5

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecCC---------CeE-EEEEeccccCCceEEEEec
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVND---------EYH-SISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~---------~~~-~~~~~~~~~~d~g~Y~C~~  230 (232)
                      .||.+.+...   ...+..++|.|.+.|+.+.  .++|++||..+..+         +.| ..+...+...+...|+|+|
T Consensus         2 ~PP~V~v~~~---~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~~~~~~~ytC~V   78 (91)
T d3frua1           2 EPPSMRLKAR---PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVKRGDEHHYQCQV   78 (91)
T ss_dssp             BCCEEEEEEE---ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEETTCGGGEEEEE
T ss_pred             CCCEEEEEec---CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEECCCCCCEEEEEE
Confidence            3566554322   1235678999999997544  59999999876421         222 2222233445667899987


Q ss_pred             C
Q psy15206        231 P  231 (232)
Q Consensus       231 ~  231 (232)
                      .
T Consensus        79 ~   79 (91)
T d3frua1          79 E   79 (91)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4e-06  Score=49.10  Aligned_cols=65  Identities=15%  Similarity=0.131  Sum_probs=45.5

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEEec-----------CCCeEEEEEeccccCCceEEEEec
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEIVV-----------NDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~-----------~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      .|.+...|.. .+..|++|+|.|.... ....+.++|+|....           ......+.+..++..|+|+|+|..
T Consensus         4 kPsLsa~P~~-~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           4 KPTLSAQPSP-VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEee
Confidence            5777777765 4789999999998743 345788999876421           123456788888999999999964

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.29  E-value=2.8e-06  Score=51.31  Aligned_cols=64  Identities=11%  Similarity=0.248  Sum_probs=46.8

Q ss_pred             EEeccceeeeeccCeEEEEEEeecC--CCCeEEEeeC--CEE----e-----------cCCCeEEEEEeccccCCceEEE
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAY--PHPILYWAKD--GEI----V-----------VNDEYHSISNFGTSEGTTGSLQ  227 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~~~W~~~--g~~----~-----------~~~~~~~~~~~~~~~~d~g~Y~  227 (232)
                      +...|..+....|++++|.|...+.  ....+.|+|.  |..    +           .....+.|.+.++..+|+|.|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   82 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence            3445667778899999999988653  3345899973  211    1           1334678899999999999999


Q ss_pred             Eec
Q psy15206        228 CKV  230 (232)
Q Consensus       228 C~~  230 (232)
                      |.+
T Consensus        83 Ca~   85 (113)
T d1vesa_          83 CQA   85 (113)
T ss_dssp             EEE
T ss_pred             eee
Confidence            986

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.29  E-value=1.6e-06  Score=51.82  Aligned_cols=68  Identities=25%  Similarity=0.426  Sum_probs=46.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee---C---------CCCcEEe-e---CCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI---L---------PNGQTIF-T---GSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~---~---------~~~~~~~-~---~~~l~i~~~~~~~~g~y  141 (232)
                      .|....+.+|+++.|.|.........+.||+...  .+   .         ....+.. .   ...|.|.++..+|+|.|
T Consensus         7 ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Y   86 (108)
T d1jhll_           7 SPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMY   86 (108)
T ss_dssp             ECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEE
T ss_pred             cCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEE
Confidence            3555677889999999998765556799987421  10   0         0111111 1   13799999999999999


Q ss_pred             EEEeEe
Q psy15206        142 YCVAQN  147 (232)
Q Consensus       142 ~C~~~~  147 (232)
                      .|...+
T Consensus        87 yCA~~~   92 (108)
T d1jhll_          87 ICQQHN   92 (108)
T ss_dssp             EEEECS
T ss_pred             EEeeCC
Confidence            997543

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=1.2e-06  Score=52.39  Aligned_cols=63  Identities=10%  Similarity=0.320  Sum_probs=46.9

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE---Eec------------------CCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE---IVV------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~---~~~------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|.........+.|+|.  |.   .+.                  ....+.|.+.++..+|+|.
T Consensus         6 QsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~   85 (107)
T d1kcvl1           6 QSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDAD   85 (107)
T ss_dssp             ESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCce
Confidence            446667788999999999986665557999974  11   110                  2346788888999999999


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |.|.+.
T Consensus        86 YyCa~~   91 (107)
T d1kcvl1          86 YYCGQS   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            999753

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=5.6e-06  Score=49.61  Aligned_cols=80  Identities=13%  Similarity=0.233  Sum_probs=49.9

Q ss_pred             eecCCcEEEEeeecc-CCCC--eEEEEeCCeeeCCC--------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCCc--
Q psy15206         86 AKEGQSVQLECHAEG-HPIP--TISWRRENNAILPN--------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGRG--  152 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~-~~~~--~~~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--  152 (232)
                      +.+|+.+.|.|.+.+ .|..  .+.|++++..+...        .......+.|.+.....++...|+|.+.+..+..  
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~~   92 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDS   92 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTT
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCccc
Confidence            568999999999876 5643  58899988765211        0111122356666555555669999999864321  


Q ss_pred             ----eeeEEEEEEEecc
Q psy15206        153 ----ARRKIEVKVEFAP  165 (232)
Q Consensus       153 ----~~~~~~l~v~~~p  165 (232)
                          ......|.|.++|
T Consensus        93 ~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          93 VPTVRQAVKELQVYISP  109 (109)
T ss_dssp             SCSEEEEEEECCEECCC
T ss_pred             cccccceeEEeEEEeCC
Confidence                2234456666554

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3e-06  Score=49.36  Aligned_cols=65  Identities=22%  Similarity=0.427  Sum_probs=40.2

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CC-eEEEEEeccccCCceEEEEe
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DE-YHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~-~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      +|.+.+...   ...++.++|.|.+.|+.+.  .++|++||..+..           +. ............+...|+|+
T Consensus         3 PP~v~v~~~---~~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~   79 (95)
T d1k5na1           3 PPKTHVTHH---PISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCH   79 (95)
T ss_dssp             CCEEEEEEE---EEETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEE
T ss_pred             CCccEEEec---cCCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEE
Confidence            555554322   1235679999999998766  4899999987642           11 12222223344555689999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus        80 V~   81 (95)
T d1k5na1          80 VQ   81 (95)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.26  E-value=4.5e-06  Score=51.09  Aligned_cols=68  Identities=25%  Similarity=0.400  Sum_probs=47.3

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeC---------C-------------CCcEEe---eC--CeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAIL---------P-------------NGQTIF---TG--STLQI  130 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~---------~-------------~~~~~~---~~--~~l~i  130 (232)
                      .|....+.+|+++.|.|...+.....+.|++.  +..+.         .             ..++..   .+  ..|.|
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I   86 (122)
T d1nezg_           7 FPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTL   86 (122)
T ss_dssp             ESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEE
T ss_pred             cCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEE
Confidence            46667888999999999987766777999873  22110         0             001110   11  26999


Q ss_pred             CCCCCCCCeEEEEEeEe
Q psy15206        131 PRITKEDRGAYYCVAQN  147 (232)
Q Consensus       131 ~~~~~~~~g~y~C~~~~  147 (232)
                      .+++.+|.|.|.|.+..
T Consensus        87 ~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          87 NKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             cccccCCCEEEEeeEeC
Confidence            99999999999998754

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.26  E-value=1.1e-06  Score=53.26  Aligned_cols=64  Identities=14%  Similarity=0.304  Sum_probs=46.4

Q ss_pred             EEeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE---Eec--------------------CCCeEEEEEeccccC
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE---IVV--------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~---~~~--------------------~~~~~~~~~~~~~~~  221 (232)
                      +...+..+.+.+|++++|.|.........+.|+|.  |.   .+.                    ....+.|.+.++..+
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            34445566788999999999987766667999974  21   110                    122456888888889


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |+|.|.|.+
T Consensus        84 Dsg~YyCa~   92 (115)
T d1lp9e1          84 DSALYYCAL   92 (115)
T ss_dssp             GCEEEEEEE
T ss_pred             cCccceEEE
Confidence            999999975

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.25  E-value=2.1e-06  Score=51.26  Aligned_cols=63  Identities=13%  Similarity=0.208  Sum_probs=46.6

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---e------------------cCCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---V------------------VNDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~------------------~~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|...+.....+.|+|.  |..   +                  .....+.|.+.++..+|+|.
T Consensus         6 QsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1ospl1           6 QSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT   85 (107)
T ss_dssp             CCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred             eeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence            346667788999999999886655557999983  211   1                  02345788888999999999


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |.|.+.
T Consensus        86 YyCa~~   91 (107)
T d1ospl1          86 YFCQQY   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEEeec
Confidence            999753

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.25  E-value=1.8e-06  Score=51.48  Aligned_cols=68  Identities=22%  Similarity=0.343  Sum_probs=46.9

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--e---eC---------CCCcEEe----eCCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--A---IL---------PNGQTIF----TGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~---~~---------~~~~~~~----~~~~l~i~~~~~~~~g~y  141 (232)
                      .|..+.+.+|++++|.|...+.....+.||+...  .   +.         ...++..    ....|.|.++..+|++.|
T Consensus         6 ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   85 (106)
T d1op3k1           6 SPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATY   85 (106)
T ss_dssp             ECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEE
T ss_pred             cCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcE
Confidence            3566778899999999998665556799998531  1   10         0112211    123699999999999999


Q ss_pred             EEEeEe
Q psy15206        142 YCVAQN  147 (232)
Q Consensus       142 ~C~~~~  147 (232)
                      .|....
T Consensus        86 yCa~~~   91 (106)
T d1op3k1          86 HCQHYA   91 (106)
T ss_dssp             EEEEEC
T ss_pred             eeeeCC
Confidence            998653

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=3.9e-06  Score=48.19  Aligned_cols=40  Identities=20%  Similarity=0.418  Sum_probs=28.7

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      +|.+.+...   ...++.++|.|.+.|+.+.  .++|.+||..+.
T Consensus         3 pP~v~v~~~---~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~   44 (89)
T d2mhaa1           3 SPKAHVTHH---SRPEDKVTLRCWALGFYPADITLTWQLNGEELI   44 (89)
T ss_dssp             CCEEEECCE---ESCSSEEEEEEEEESCBSSCCEEEEEETTEEEC
T ss_pred             CCEeEEEcc---CCCCCCEEEEEEEEeEECCCCEEEEEECCEEeC
Confidence            555554322   2346789999999998665  489999998764

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=2.1e-06  Score=51.16  Aligned_cols=66  Identities=18%  Similarity=0.401  Sum_probs=45.3

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee---C---------CCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI---L---------PNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~---~---------~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      +..+.+.+|+++.|.|...+.....+.||+..  ..+   .         ...++..    ....|.|.+++.+|+|.|.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence            34567889999999999876555679999742  111   0         0111211    1237999999999999999


Q ss_pred             EEeE
Q psy15206        143 CVAQ  146 (232)
Q Consensus       143 C~~~  146 (232)
                      |...
T Consensus        87 Ca~~   90 (106)
T d1lk3l1          87 CQQS   90 (106)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            9654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.24  E-value=1.7e-06  Score=52.60  Aligned_cols=65  Identities=17%  Similarity=0.267  Sum_probs=45.5

Q ss_pred             EEeccceeeeeccCeEEEEEEeecC-CCCeEEEeeC--C-EE--ec-----------------------CCCeEEEEEec
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAY-PHPILYWAKD--G-EI--VV-----------------------NDEYHSISNFG  217 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~--g-~~--~~-----------------------~~~~~~~~~~~  217 (232)
                      +...|..+.+.+|++++|.|...+. ....+.|+|.  | ..  +.                       ....+.|.+.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            3445666778899999999987543 3456999872  2 11  10                       11236778888


Q ss_pred             cccCCceEEEEecC
Q psy15206        218 TSEGTTGSLQCKVP  231 (232)
Q Consensus       218 ~~~~d~g~Y~C~~~  231 (232)
                      +..+|+|.|.|.+.
T Consensus        83 ~~~~Dsg~YyCa~~   96 (116)
T d1tvda_          83 VRTEDSATYYCAFT   96 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccccccceeeEe
Confidence            89999999999764

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.24  E-value=1.5e-06  Score=52.32  Aligned_cols=62  Identities=15%  Similarity=0.244  Sum_probs=45.3

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---e--------------------cCCCeEEEEEeccccCCce
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---V--------------------VNDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~--------------------~~~~~~~~~~~~~~~~d~g  224 (232)
                      .|..+.+..|++++|.|.........+.|+|.  |..   +                    .....+.|.+.++..+|+|
T Consensus         5 ~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   84 (110)
T d1u3ha1           5 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA   84 (110)
T ss_dssp             SCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCS
T ss_pred             cCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCce
Confidence            45566778999999999876654456899974  111   1                    0233578889999999999


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      .|.|.+.
T Consensus        85 ~YyCa~~   91 (110)
T d1u3ha1          85 TYFCAAS   91 (110)
T ss_dssp             EEEECCE
T ss_pred             eEeeeec
Confidence            9999763

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=5e-06  Score=49.48  Aligned_cols=64  Identities=13%  Similarity=0.212  Sum_probs=46.8

Q ss_pred             EeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--C-EE-e-c------------------CCCeEEEEEeccccCCce
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--G-EI-V-V------------------NDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g-~~-~-~------------------~~~~~~~~~~~~~~~d~g  224 (232)
                      ...|..+.+..|++++|.|.........+.|++.  | .. + .                  +...+.|.+.++..+|+|
T Consensus         4 tQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA   83 (106)
T d1a0ql1           4 TQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIA   83 (106)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCS
T ss_pred             ECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCE
Confidence            3446667788999999999876655556999973  1 11 1 0                  234578889999999999


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      .|.|.+.
T Consensus        84 ~YyCa~~   90 (106)
T d1a0ql1          84 TYYCLQY   90 (106)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEe
Confidence            9999753

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.23  E-value=3.3e-06  Score=49.36  Aligned_cols=67  Identities=19%  Similarity=0.346  Sum_probs=38.2

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEE-EEEeccccCCceEEEEe
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHS-ISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~-~~~~~~~~~d~g~Y~C~  229 (232)
                      +|.+.+.+... ...++..+|.|.+.|+.+.  .+.|++||..+..           ++.|. .+...+...+...|+|+
T Consensus         2 ~P~V~v~p~~~-~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~   80 (97)
T d1uvqb1           2 EPTVTISPSRT-EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCH   80 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEE
T ss_pred             CCEEEEecCCc-ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEE
Confidence            45555443322 3356778999999997654  5999999976542           22232 22233445666789999


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      |.
T Consensus        81 V~   82 (97)
T d1uvqb1          81 VE   82 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.4e-06  Score=51.88  Aligned_cols=83  Identities=18%  Similarity=0.244  Sum_probs=50.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCC---CCeEEEEeCCeeeC--------------CCCcEEe--e----CCeEEECCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP---IPTISWRRENNAIL--------------PNGQTIF--T----GSTLQIPRITKE  136 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~~~~~--------------~~~~~~~--~----~~~l~i~~~~~~  136 (232)
                      .|..+...+|+++.|.|......   ...+.|++....-.              ...+...  .    ..+|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            56677888999999999864321   23478987432110              0111111  1    137999999999


Q ss_pred             CCeEEEEEeEeCCCCceeeEEEEEEEe
Q psy15206        137 DRGAYYCVAQNGIGRGARRKIEVKVEF  163 (232)
Q Consensus       137 ~~g~y~C~~~~~~~~~~~~~~~l~v~~  163 (232)
                      |+|.|.|.+...... ....+.|.|..
T Consensus        85 DsG~Y~C~v~~~~~~-~~~~v~L~V~~  110 (116)
T d1xeda_          85 DSGRYKCGLGINSRG-LSFDVSLEVLE  110 (116)
T ss_dssp             GCEEEEEEESCGGGC-CEEEEEEEEEC
T ss_pred             CCEEEEEEEEcCCCC-ceEeEEEEEEC
Confidence            999999998643222 33345565543

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.23  E-value=2.3e-06  Score=51.83  Aligned_cols=63  Identities=19%  Similarity=0.294  Sum_probs=44.9

Q ss_pred             EeccceeeeeccCeEEEEEEeecC-CCCeEEEeeC--CEE---e---------------------cCCCeEEEEEecccc
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAY-PHPILYWAKD--GEI---V---------------------VNDEYHSISNFGTSE  220 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~--g~~---~---------------------~~~~~~~~~~~~~~~  220 (232)
                      ...+..+.+.+|++|+|.|..... ....+.|+|.  |..   +                     .....+.|.+.++..
T Consensus         4 tQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (114)
T d2ak4d1           4 TQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV   83 (114)
T ss_dssp             ECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             EecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence            444666778899999999986443 3345889873  211   1                     023467888889999


Q ss_pred             CCceEEEEec
Q psy15206        221 GTTGSLQCKV  230 (232)
Q Consensus       221 ~d~g~Y~C~~  230 (232)
                      +|+|.|.|.+
T Consensus        84 ~Dsg~YyCa~   93 (114)
T d2ak4d1          84 VDSAVYFCAL   93 (114)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccCCCceEeC
Confidence            9999999975

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.23  E-value=1.8e-06  Score=51.52  Aligned_cols=62  Identities=8%  Similarity=0.231  Sum_probs=45.4

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---ec------------------CCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---VV------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~~------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|.........+.|+|.  |..   +.                  .+..+.|.+.++..+|+|.
T Consensus         6 Q~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~   85 (107)
T d1mexl1           6 QSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAE   85 (107)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             cCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheeccee
Confidence            345566788999999999875554557999974  211   10                  2345788888999999999


Q ss_pred             EEEec
Q psy15206        226 LQCKV  230 (232)
Q Consensus       226 Y~C~~  230 (232)
                      |.|.+
T Consensus        86 YyCa~   90 (107)
T d1mexl1          86 YFCQQ   90 (107)
T ss_dssp             EEEEE
T ss_pred             EEEeE
Confidence            99975

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.22  E-value=2.2e-06  Score=51.21  Aligned_cols=67  Identities=24%  Similarity=0.415  Sum_probs=46.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee---C---------CCCcEEee----CCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI---L---------PNGQTIFT----GSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~---~---------~~~~~~~~----~~~l~i~~~~~~~~g~y  141 (232)
                      .|..+.+.+|++++|.|.........+.|++...  .+   .         ...++...    ...|.|.++..+|++.|
T Consensus         7 ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~Y   86 (107)
T d1tjgl1           7 SPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATY   86 (107)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             eCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceE
Confidence            3566778899999999998655556789988421  11   0         01111111    23799999999999999


Q ss_pred             EEEeE
Q psy15206        142 YCVAQ  146 (232)
Q Consensus       142 ~C~~~  146 (232)
                      .|...
T Consensus        87 yCa~~   91 (107)
T d1tjgl1          87 YCQQL   91 (107)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99754

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.21  E-value=5.2e-06  Score=49.91  Aligned_cols=62  Identities=15%  Similarity=0.187  Sum_probs=46.0

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---e--------------------cCCCeEEEEEeccccCCc
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---V--------------------VNDEYHSISNFGTSEGTT  223 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~--------------------~~~~~~~~~~~~~~~~d~  223 (232)
                      ..|..+.+.+|++++|.|...+.....+.|++.  |..   +                    .....+.|.+.++..+|+
T Consensus         5 Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (111)
T d1bd2d1           5 QNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDS   84 (111)
T ss_dssp             CCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGC
T ss_pred             ccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccccc
Confidence            345566778999999999876665667889873  211   1                    023467888889999999


Q ss_pred             eEEEEec
Q psy15206        224 GSLQCKV  230 (232)
Q Consensus       224 g~Y~C~~  230 (232)
                      |.|.|.+
T Consensus        85 a~YyCa~   91 (111)
T d1bd2d1          85 AVYFCAA   91 (111)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeec
Confidence            9999975

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.21  E-value=1.6e-06  Score=51.83  Aligned_cols=63  Identities=10%  Similarity=0.223  Sum_probs=47.0

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---ec------------------CCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---VV------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~~------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|.........+.|+|.  |..   +.                  ....+.|.+.++..+|+|.
T Consensus         6 QsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d3cx5k1           6 QTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIAT   85 (107)
T ss_dssp             EESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSE
T ss_pred             CcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCc
Confidence            346666788999999999976665657999974  211   10                  2346889999999999999


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |.|.+.
T Consensus        86 YyCa~~   91 (107)
T d3cx5k1          86 YFCQHH   91 (107)
T ss_dssp             EEEEEC
T ss_pred             EEeeeC
Confidence            999753

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.21  E-value=3.3e-06  Score=50.40  Aligned_cols=67  Identities=21%  Similarity=0.375  Sum_probs=46.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee---C---------CCCcEEe----eCCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI---L---------PNGQTIF----TGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~---~---------~~~~~~~----~~~~l~i~~~~~~~~g~y  141 (232)
                      .+....+.+|++++|.|.........+.||+..  ..+   .         ...++..    ....|.|.++..+|++.|
T Consensus         7 ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~Y   86 (107)
T d1mexl1           7 SQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEY   86 (107)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred             CCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeE
Confidence            455677889999999998765555579999742  111   0         0112221    124699999999999999


Q ss_pred             EEEeE
Q psy15206        142 YCVAQ  146 (232)
Q Consensus       142 ~C~~~  146 (232)
                      .|.+.
T Consensus        87 yCa~~   91 (107)
T d1mexl1          87 FCQQY   91 (107)
T ss_dssp             EEEEC
T ss_pred             EEeEC
Confidence            99754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.21  E-value=1.9e-06  Score=52.30  Aligned_cols=62  Identities=13%  Similarity=0.334  Sum_probs=45.3

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE---Eec---------------------CCCeEEEEEeccccCC
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE---IVV---------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~---~~~---------------------~~~~~~~~~~~~~~~d  222 (232)
                      ..+..+.+.+|++++|.|.........+.|+|.  |.   .+.                     ....+.|.+.++..+|
T Consensus         5 Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1i9ea_           5 QPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSD   84 (115)
T ss_dssp             CCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGG
T ss_pred             cCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccc
Confidence            334556788999999999987665567889872  21   110                     2345788889999999


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      +|.|.|.+
T Consensus        85 sg~YyCa~   92 (115)
T d1i9ea_          85 SAVYFCAV   92 (115)
T ss_dssp             CEEEEEEE
T ss_pred             cceecccc
Confidence            99999975

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.21  E-value=2.9e-06  Score=50.62  Aligned_cols=63  Identities=10%  Similarity=0.285  Sum_probs=46.7

Q ss_pred             EeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE---Eec------------------CCCeEEEEEeccccCCce
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE---IVV------------------NDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~---~~~------------------~~~~~~~~~~~~~~~d~g  224 (232)
                      ...|..+.+..|++++|.|.........+.|+|.  |.   .+.                  .+..+.|.+.++..+|+|
T Consensus         5 tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA   84 (107)
T d1tjgl1           5 TQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFA   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCc
Confidence            3456677788999999999986555567899873  21   110                  234678888899999999


Q ss_pred             EEEEec
Q psy15206        225 SLQCKV  230 (232)
Q Consensus       225 ~Y~C~~  230 (232)
                      .|.|.+
T Consensus        85 ~YyCa~   90 (107)
T d1tjgl1          85 TYYCQQ   90 (107)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            999974

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.21  E-value=5e-06  Score=49.95  Aligned_cols=64  Identities=11%  Similarity=0.277  Sum_probs=46.1

Q ss_pred             EeccceeeeeccCeEEEEEEeecC--CCCeEEEeeC--C----EEec-----------CCCeEEEEEeccccCCceEEEE
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAY--PHPILYWAKD--G----EIVV-----------NDEYHSISNFGTSEGTTGSLQC  228 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~--p~~~~~W~~~--g----~~~~-----------~~~~~~~~~~~~~~~d~g~Y~C  228 (232)
                      ...|..+....|++++|.|...+.  ....+.|+|.  |    ..+.           ....+.|.+.++..+|+|.|.|
T Consensus         3 ~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyC   82 (112)
T d1sq2n_           3 DQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRC   82 (112)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEE
T ss_pred             EecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeE
Confidence            344666677899999999987543  3456999973  1    1111           2345788999999999999999


Q ss_pred             ecC
Q psy15206        229 KVP  231 (232)
Q Consensus       229 ~~~  231 (232)
                      .+.
T Consensus        83 A~~   85 (112)
T d1sq2n_          83 GLG   85 (112)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            764

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.20  E-value=3.1e-06  Score=50.49  Aligned_cols=67  Identities=24%  Similarity=0.431  Sum_probs=45.8

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee---C---------CCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI---L---------PNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~---~---------~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      |..+.+.+|++++|.|.........+.||+..  ..+   .         ...++..    ....|.|.++..+|++.|.
T Consensus         8 P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d1d5il1           8 PSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYY   87 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEE
Confidence            55567789999999998866555668899742  111   0         0112211    1237999999999999999


Q ss_pred             EEeEe
Q psy15206        143 CVAQN  147 (232)
Q Consensus       143 C~~~~  147 (232)
                      |....
T Consensus        88 Ca~~~   92 (107)
T d1d5il1          88 CLQYD   92 (107)
T ss_dssp             EEECS
T ss_pred             eeecc
Confidence            97543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.20  E-value=5.5e-06  Score=50.39  Aligned_cols=63  Identities=6%  Similarity=0.230  Sum_probs=45.6

Q ss_pred             EeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---e------------------------cCCCeEEEEEecc
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---V------------------------VNDEYHSISNFGT  218 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~------------------------~~~~~~~~~~~~~  218 (232)
                      ...|..+.+..|++++|.|...+.....+.|+|.  |..   +                        .....+.|.+.++
T Consensus         5 ~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~   84 (118)
T d2ij0c1           5 SQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSA   84 (118)
T ss_dssp             EEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSC
T ss_pred             EEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccc
Confidence            3446666788999999999987765667999983  211   1                        0122357888888


Q ss_pred             ccCCceEEEEec
Q psy15206        219 SEGTTGSLQCKV  230 (232)
Q Consensus       219 ~~~d~g~Y~C~~  230 (232)
                      ..+|+|.|.|.+
T Consensus        85 ~~~Dsa~YyCa~   96 (118)
T d2ij0c1          85 HPEDSGFYVCSA   96 (118)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccccCceEEEEE
Confidence            889999999976

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.20  E-value=3.2e-06  Score=50.66  Aligned_cols=67  Identities=25%  Similarity=0.424  Sum_probs=45.8

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee---C---------CCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI---L---------PNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~---~---------~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      |..+.+.+|+++.|.|...+.....+.||+...  .+   .         ...++..    ....|.|.++..+|++.|.
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~Yy   89 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYY   89 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEE
Confidence            555678889999999998765556788997421  11   0         0112211    1236999999999999999


Q ss_pred             EEeEe
Q psy15206        143 CVAQN  147 (232)
Q Consensus       143 C~~~~  147 (232)
                      |.+..
T Consensus        90 CA~~~   94 (109)
T d1bwwa_          90 CQQYQ   94 (109)
T ss_dssp             EEECS
T ss_pred             EeecC
Confidence            98653

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.20  E-value=1.6e-06  Score=52.60  Aligned_cols=64  Identities=13%  Similarity=0.298  Sum_probs=46.6

Q ss_pred             EeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE---Eec---------------------CCCeEEEEEeccccC
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE---IVV---------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~---~~~---------------------~~~~~~~~~~~~~~~  221 (232)
                      ...+..+.+.+|++++|.|.........+.|+|.  |.   .+.                     ....+.|.+.++..+
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS   83 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence            3446667788999999999987665567999973  11   110                     123467888888999


Q ss_pred             CceEEEEecC
Q psy15206        222 TTGSLQCKVP  231 (232)
Q Consensus       222 d~g~Y~C~~~  231 (232)
                      |+|.|.|.+.
T Consensus        84 Dsa~YyCa~~   93 (115)
T d1j8hd1          84 DAAEYFCAVS   93 (115)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCccceeeec
Confidence            9999999863

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=1.7e-06  Score=51.59  Aligned_cols=61  Identities=10%  Similarity=0.267  Sum_probs=45.3

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--C---EEec------------------CCCeEEEEEeccccCCceEE
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--G---EIVV------------------NDEYHSISNFGTSEGTTGSL  226 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g---~~~~------------------~~~~~~~~~~~~~~~d~g~Y  226 (232)
                      +|..+.+..|++++|.|...+.....+.|+|.  |   ..+.                  ....+.|.+.++..+|+|.|
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   85 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY   85 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCc
Confidence            34556778999999999987655557999974  1   1111                  23457888889999999999


Q ss_pred             EEec
Q psy15206        227 QCKV  230 (232)
Q Consensus       227 ~C~~  230 (232)
                      .|..
T Consensus        86 yCa~   89 (106)
T d1lk3l1          86 FCQQ   89 (106)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            9965

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.5e-06  Score=52.88  Aligned_cols=62  Identities=13%  Similarity=0.337  Sum_probs=43.5

Q ss_pred             ccceeeeeccCeEEEEEEeecCC---CCeEEEeeCCE--E---e--------------------cCCCeEEEEEeccccC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYP---HPILYWAKDGE--I---V--------------------VNDEYHSISNFGTSEG  221 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~g~--~---~--------------------~~~~~~~~~~~~~~~~  221 (232)
                      .|..+.+.+|++++|.|......   ...+.|+|...  .   +                    .....+.|.+.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            46667788999999999854321   22478987421  1   1                    0234578889999999


Q ss_pred             CceEEEEecC
Q psy15206        222 TTGSLQCKVP  231 (232)
Q Consensus       222 d~g~Y~C~~~  231 (232)
                      |+|.|.|.+.
T Consensus        85 DsG~Y~C~v~   94 (116)
T d1xeda_          85 DSGRYKCGLG   94 (116)
T ss_dssp             GCEEEEEEES
T ss_pred             CCEEEEEEEE
Confidence            9999999874

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.19  E-value=6.3e-06  Score=49.15  Aligned_cols=62  Identities=8%  Similarity=0.202  Sum_probs=46.0

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE---Ee------------------cCCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE---IV------------------VNDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~---~~------------------~~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|...+.....+.|+|.  |.   .+                  .....+.|.+.++..+|+|.
T Consensus         6 Q~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~   85 (108)
T d1jhll_           6 QSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAM   85 (108)
T ss_dssp             EECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSE
T ss_pred             ccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceE
Confidence            346666788899999999987655556899873  11   11                  13346788999999999999


Q ss_pred             EEEec
Q psy15206        226 LQCKV  230 (232)
Q Consensus       226 Y~C~~  230 (232)
                      |.|.+
T Consensus        86 YyCA~   90 (108)
T d1jhll_          86 YICQQ   90 (108)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99974

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.19  E-value=4e-06  Score=50.81  Aligned_cols=61  Identities=10%  Similarity=0.309  Sum_probs=44.4

Q ss_pred             ccceeeeeccCeEEEEEEeecC-CCCeEEEeeC-----CEEe----------------------------cCCCeEEEEE
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAY-PHPILYWAKD-----GEIV----------------------------VNDEYHSISN  215 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~-----g~~~----------------------------~~~~~~~~~~  215 (232)
                      .|..+.+..|++++|.|...+. ....+.|+|.     +..+                            .....+.|.+
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   83 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEee
Confidence            4666778899999999998764 3446899873     2211                            0123467888


Q ss_pred             eccccCCceEEEEec
Q psy15206        216 FGTSEGTTGSLQCKV  230 (232)
Q Consensus       216 ~~~~~~d~g~Y~C~~  230 (232)
                      .++..+|+|.|.|.+
T Consensus        84 ~~~~~~Dsg~Y~Ca~   98 (115)
T d2atpb1          84 MNVKPEDSDFYFCAT   98 (115)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCCCcEEEEeE
Confidence            889999999999976

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.19  E-value=1.3e-05  Score=48.45  Aligned_cols=68  Identities=19%  Similarity=0.457  Sum_probs=45.8

Q ss_pred             CCCceEeecCCcEEEEeeeccC-CCCeEEEEeCC-----eee------C-----------CCCcEEe------eCCeEEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH-PIPTISWRREN-----NAI------L-----------PNGQTIF------TGSTLQI  130 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~-----~~~------~-----------~~~~~~~------~~~~l~i  130 (232)
                      .+....+.+|++++|.|...+. ....+.|++..     +.+      .           ...+...      ....|.|
T Consensus         4 ~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   83 (115)
T d2atpb1           4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             eCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEee
Confidence            3556778899999999998763 34568998742     111      0           0111111      1237999


Q ss_pred             CCCCCCCCeEEEEEeEe
Q psy15206        131 PRITKEDRGAYYCVAQN  147 (232)
Q Consensus       131 ~~~~~~~~g~y~C~~~~  147 (232)
                      .++..+|+|.|.|.+..
T Consensus        84 ~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          84 MNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             cccCCCCCcEEEEeEcC
Confidence            99999999999998753

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.19  E-value=2.4e-06  Score=51.13  Aligned_cols=63  Identities=14%  Similarity=0.277  Sum_probs=46.4

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE---Eec------------------CCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE---IVV------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~---~~~------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|.........+.|+|.  |.   .+.                  ....+.|.+.++..+|+|.
T Consensus         6 QsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~   85 (109)
T d1mqkl_           6 QTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGS   85 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCee
Confidence            346667778899999999976555556999983  21   111                  2345788888899999999


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |.|.+.
T Consensus        86 YyCA~~   91 (109)
T d1mqkl_          86 YYCQHH   91 (109)
T ss_dssp             EEEEEC
T ss_pred             EEEeee
Confidence            999864

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.2e-06  Score=53.00  Aligned_cols=65  Identities=11%  Similarity=0.140  Sum_probs=46.1

Q ss_pred             EEeccceeeeeccCeEEEEEEeecCC-CCeEEEeeCC----E---Eec----------------------CCCeEEEEEe
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAYP-HPILYWAKDG----E---IVV----------------------NDEYHSISNF  216 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~g----~---~~~----------------------~~~~~~~~~~  216 (232)
                      +...|....+..|++++|.|...+.. ...+.|+|..    .   .+.                      ....+.|.+.
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~   82 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEc
Confidence            34567777888999999999875543 3458999831    1   110                      1224578888


Q ss_pred             ccccCCceEEEEecC
Q psy15206        217 GTSEGTTGSLQCKVP  231 (232)
Q Consensus       217 ~~~~~d~g~Y~C~~~  231 (232)
                      ++..+|+|.|.|.+.
T Consensus        83 ~l~~~Dsg~YyCa~~   97 (114)
T d1akjd_          83 DFRRENEGYYFCSAL   97 (114)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             cCCCCCCEEEeEeEc
Confidence            889999999999863

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.7e-05  Score=45.78  Aligned_cols=68  Identities=18%  Similarity=0.294  Sum_probs=43.6

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeCCe--ee------------CCCCcEEee------CCeEEECCCCCCCCe
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRRENN--AI------------LPNGQTIFT------GSTLQIPRITKEDRG  139 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~--~~------------~~~~~~~~~------~~~l~i~~~~~~~~g  139 (232)
                      ..+...+|+++.|.|......  ...+.|++...  ..            ....+....      ..+|.|.+++.+|+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG   83 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSG   83 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCE
Confidence            345667899999999865432  23477987321  10            001111111      126999999999999


Q ss_pred             EEEEEeEeCC
Q psy15206        140 AYYCVAQNGI  149 (232)
Q Consensus       140 ~y~C~~~~~~  149 (232)
                      .|.|.+....
T Consensus        84 ~Y~C~v~~~~   93 (108)
T d1hkfa_          84 HYWCRIYRPS   93 (108)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEecCC
Confidence            9999987543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.18  E-value=5.1e-06  Score=49.89  Aligned_cols=68  Identities=22%  Similarity=0.391  Sum_probs=46.3

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eeeC------CCC------cEEe------eCCeEEECCCCCCCCe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAIL------PNG------QTIF------TGSTLQIPRITKEDRG  139 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~~------~~~------~~~~------~~~~l~i~~~~~~~~g  139 (232)
                      .|....+.+|++++|.|.........+.||+..  ..+.      ...      +...      ....|.|.++..+|+|
T Consensus         5 ~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   84 (110)
T d1u3ha1           5 SPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSA   84 (110)
T ss_dssp             SCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCS
T ss_pred             cCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCce
Confidence            456677889999999999865545569999742  1110      000      0000      0136999999999999


Q ss_pred             EEEEEeEe
Q psy15206        140 AYYCVAQN  147 (232)
Q Consensus       140 ~y~C~~~~  147 (232)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (110)
T d1u3ha1          85 TYFCAASA   92 (110)
T ss_dssp             EEEECCEE
T ss_pred             eEeeeecC
Confidence            99998764

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.17  E-value=4.8e-06  Score=48.48  Aligned_cols=65  Identities=11%  Similarity=0.166  Sum_probs=47.0

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCCeEEEeeCCEE-----ec-----CCCeEEEEEeccccCCceEEEEec
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDGEI-----VV-----NDEYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g~~-----~~-----~~~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      .|.+...|. ..+..|++++|.|.... ....+.++|+|..     ..     ......+.+..++..|+|+|.|..
T Consensus         2 KPsLsa~P~-~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y   76 (96)
T d1nkra1           2 KPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG   76 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCEEEeeCC-CccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEE
Confidence            466777665 35779999999999743 3557999998742     11     123456888889999999999963

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.17  E-value=4.5e-06  Score=49.67  Aligned_cols=62  Identities=8%  Similarity=0.282  Sum_probs=46.2

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeCC-----EEec------------------CCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG-----EIVV------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g-----~~~~------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|...+.-...+.|++..     ..+.                  ....+.|.+.++..+|+|.
T Consensus         5 Q~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   84 (106)
T d1op3k1           5 QSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFAT   84 (106)
T ss_dssp             EECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCc
Confidence            3466777889999999998866555579999741     1110                  2345778888899999999


Q ss_pred             EEEec
Q psy15206        226 LQCKV  230 (232)
Q Consensus       226 Y~C~~  230 (232)
                      |.|.+
T Consensus        85 YyCa~   89 (106)
T d1op3k1          85 YHCQH   89 (106)
T ss_dssp             EEEEE
T ss_pred             Eeeee
Confidence            99974

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.16  E-value=1.2e-05  Score=48.60  Aligned_cols=69  Identities=17%  Similarity=0.291  Sum_probs=47.7

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee------CCC-------CcEEe--e----CCeEEECCCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI------LPN-------GQTIF--T----GSTLQIPRITKEDR  138 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~------~~~-------~~~~~--~----~~~l~i~~~~~~~~  138 (232)
                      .+..+.+.+|+++.|.|.........+.||+..  +.+      ...       .+...  .    ...|.|.++..+|+
T Consensus         6 ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1j8hd1           6 LGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDA   85 (115)
T ss_dssp             SCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGC
T ss_pred             CCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCC
Confidence            456678889999999999866555679999732  211      000       01111  0    12699999999999


Q ss_pred             eEEEEEeEeC
Q psy15206        139 GAYYCVAQNG  148 (232)
Q Consensus       139 g~y~C~~~~~  148 (232)
                      |.|.|.+...
T Consensus        86 a~YyCa~~~~   95 (115)
T d1j8hd1          86 AEYFCAVSES   95 (115)
T ss_dssp             EEEEEEEESS
T ss_pred             ccceeeecCC
Confidence            9999998754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.16  E-value=4.7e-06  Score=50.48  Aligned_cols=68  Identities=21%  Similarity=0.428  Sum_probs=46.3

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeC--Ceee---C---CCCc---------EEe----eCCeEEECCCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAI---L---PNGQ---------TIF----TGSTLQIPRITKEDR  138 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~---~---~~~~---------~~~----~~~~l~i~~~~~~~~  138 (232)
                      .+..+.+.+|++++|.|.........+.||+.  +..+   .   ....         ...    ....|.|.++..+|+
T Consensus         6 ~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1i9ea_           6 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDS   85 (115)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGC
T ss_pred             CCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccccc
Confidence            45567888999999999976655567889973  2211   0   0000         000    123799999999999


Q ss_pred             eEEEEEeEe
Q psy15206        139 GAYYCVAQN  147 (232)
Q Consensus       139 g~y~C~~~~  147 (232)
                      |.|.|.+..
T Consensus        86 g~YyCa~~~   94 (115)
T d1i9ea_          86 AVYFCAVSG   94 (115)
T ss_dssp             EEEEEEEEE
T ss_pred             ceecccccC
Confidence            999998754

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=1.4e-05  Score=48.21  Aligned_cols=69  Identities=19%  Similarity=0.352  Sum_probs=46.9

Q ss_pred             CCCceEeecCCcEEEEeeeccC-CCCeEEEEeC--Ceee-------------CCCCcEEee------CCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH-PIPTISWRRE--NNAI-------------LPNGQTIFT------GSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~--~~~~-------------~~~~~~~~~------~~~l~i~~~~~~~  137 (232)
                      .|..+.+.+|+++.|.|...+. ....+.||+.  +..+             ....++...      ...|.|.++..+|
T Consensus         5 sP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D   84 (114)
T d3bp5a1           5 YPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRND   84 (114)
T ss_dssp             ESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCC
Confidence            4666788899999999997653 3346889973  2211             111222221      1259999999999


Q ss_pred             CeEEEEEeEeC
Q psy15206        138 RGAYYCVAQNG  148 (232)
Q Consensus       138 ~g~y~C~~~~~  148 (232)
                      +|.|.|.+...
T Consensus        85 sg~YyCa~~~~   95 (114)
T d3bp5a1          85 SGIYLCGAISL   95 (114)
T ss_dssp             CEEEEEEEECS
T ss_pred             CeEEEEEEEeC
Confidence            99999987653

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.15  E-value=1.4e-05  Score=47.91  Aligned_cols=68  Identities=25%  Similarity=0.455  Sum_probs=45.2

Q ss_pred             CCceEeecCCcEEEEeeeccC-CCCeEEEEeC--CeeeC------------CCCcEEe----eCCeEEECCCCCCCCeEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGH-PIPTISWRRE--NNAIL------------PNGQTIF----TGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~--~~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y  141 (232)
                      +..+.+.+|+++.|.|...+. ....+.||+.  ++.+.            ...+...    ....|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            445778899999999987553 3445889984  22110            0001111    123699999999999999


Q ss_pred             EEEeEeC
Q psy15206        142 YCVAQNG  148 (232)
Q Consensus       142 ~C~~~~~  148 (232)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9987643

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.14  E-value=5.9e-06  Score=49.24  Aligned_cols=62  Identities=13%  Similarity=0.254  Sum_probs=45.6

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE---Eec------------------CCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE---IVV------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~---~~~------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|.........+.|+|.  |.   .+.                  ....+.|.+.++..+|+|.
T Consensus         6 Q~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~   85 (107)
T d1d5il1           6 QSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGI   85 (107)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEE
Confidence            346667788999999999886665667899874  21   110                  2345788888999999999


Q ss_pred             EEEec
Q psy15206        226 LQCKV  230 (232)
Q Consensus       226 Y~C~~  230 (232)
                      |.|..
T Consensus        86 YyCa~   90 (107)
T d1d5il1          86 YYCLQ   90 (107)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            99964

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.13  E-value=2.8e-06  Score=50.63  Aligned_cols=67  Identities=22%  Similarity=0.349  Sum_probs=46.1

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee----C--------CCCcEEe----eCCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI----L--------PNGQTIF----TGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~----~--------~~~~~~~----~~~~l~i~~~~~~~~g~y  141 (232)
                      .|..+.+.+|++++|.|.........+.||+..  ..+    .        ...++..    ...+|.|.++..+|++.|
T Consensus         6 sP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~Y   85 (106)
T d1a0ql1           6 SPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATY   85 (106)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeE
Confidence            355667889999999998766555579999842  111    0        0111111    123799999999999999


Q ss_pred             EEEeE
Q psy15206        142 YCVAQ  146 (232)
Q Consensus       142 ~C~~~  146 (232)
                      .|.+.
T Consensus        86 yCa~~   90 (106)
T d1a0ql1          86 YCLQY   90 (106)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99864

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.13  E-value=5.2e-06  Score=49.80  Aligned_cols=60  Identities=13%  Similarity=0.254  Sum_probs=43.7

Q ss_pred             cceeeeeccCeEEEEEEeecCC-CCeEEEeeC--CEE---e------------------cCCCeEEEEEeccccCCceEE
Q psy15206        171 STRIGQALHHDMDLDCHIEAYP-HPILYWAKD--GEI---V------------------VNDEYHSISNFGTSEGTTGSL  226 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p-~~~~~W~~~--g~~---~------------------~~~~~~~~~~~~~~~~d~g~Y  226 (232)
                      |..+.+.+|++++|.|...+.. ...+.|+|.  |..   +                  .....+.|.+.++..+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            4556788999999999865433 345889973  211   1                  023567888899999999999


Q ss_pred             EEec
Q psy15206        227 QCKV  230 (232)
Q Consensus       227 ~C~~  230 (232)
                      .|.+
T Consensus        85 yCa~   88 (110)
T d2esvd1          85 YCIV   88 (110)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9976

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.5e-06  Score=50.09  Aligned_cols=43  Identities=19%  Similarity=0.231  Sum_probs=29.1

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      +|.+.+.+.......++.++|.|.+.|+.+.  .|.|++||..+.
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~   48 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLP   48 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECC
Confidence            4555444333334456789999999886443  699999998754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.7e-06  Score=50.71  Aligned_cols=58  Identities=19%  Similarity=0.389  Sum_probs=42.5

Q ss_pred             eeeeccCeEEEEEEeecCCC----CeEEEeeCCEEec--------------------CCCeEEEEEeccccCCceEEEEe
Q psy15206        174 IGQALHHDMDLDCHIEAYPH----PILYWAKDGEIVV--------------------NDEYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~----~~~~W~~~g~~~~--------------------~~~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      +....|++++|.|.......    ..+.|.+++..+.                    ..+.+.|.+.++..+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            35678999999998643221    2478888765431                    23467899999999999999998


Q ss_pred             cC
Q psy15206        230 VP  231 (232)
Q Consensus       230 ~~  231 (232)
                      +.
T Consensus        84 V~   85 (105)
T d1dr9a1          84 VL   85 (105)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.12  E-value=3.2e-06  Score=50.42  Aligned_cols=66  Identities=23%  Similarity=0.416  Sum_probs=45.0

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee---C---------CCCcE----EeeCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI---L---------PNGQT----IFTGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~---~---------~~~~~----~~~~~~l~i~~~~~~~~g~y~  142 (232)
                      |..+.+.+|+++.|.|.........+.||+..  +.+   .         ...++    .....+|.|.+++.+|+|.|.
T Consensus         8 P~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (107)
T d3cx5k1           8 PVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYF   87 (107)
T ss_dssp             STTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEE
T ss_pred             CCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEE
Confidence            45567778999999998766555569999742  211   0         00011    111247999999999999999


Q ss_pred             EEeE
Q psy15206        143 CVAQ  146 (232)
Q Consensus       143 C~~~  146 (232)
                      |...
T Consensus        88 Ca~~   91 (107)
T d3cx5k1          88 CQHH   91 (107)
T ss_dssp             EEEC
T ss_pred             eeeC
Confidence            9753

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.11  E-value=1.1e-05  Score=48.84  Aligned_cols=70  Identities=23%  Similarity=0.390  Sum_probs=47.2

Q ss_pred             CCCCceEeecCCcEEEEeeecc-CCCCeEEEEeC--Ceee---C------------CCCcEEee----C--CeEEECCCC
Q psy15206         79 NSPQLSVAKEGQSVQLECHAEG-HPIPTISWRRE--NNAI---L------------PNGQTIFT----G--STLQIPRIT  134 (232)
Q Consensus        79 ~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~--~~~~---~------------~~~~~~~~----~--~~l~i~~~~  134 (232)
                      ..+..+.+.+|++++|.|...+ .....+.||+.  +..+   .            ...++...    .  .+|.|.+++
T Consensus         5 Q~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   84 (116)
T d1tvda_           5 QSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVR   84 (116)
T ss_dssp             CCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             ccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcc
Confidence            3566678889999999998754 34557999872  2211   0            01122111    1  268999999


Q ss_pred             CCCCeEEEEEeEeC
Q psy15206        135 KEDRGAYYCVAQNG  148 (232)
Q Consensus       135 ~~~~g~y~C~~~~~  148 (232)
                      .+|+|.|.|.+...
T Consensus        85 ~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          85 TEDSATYYCAFTLP   98 (116)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             ccccccceeeEecC
Confidence            99999999987754

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=1.3e-05  Score=48.71  Aligned_cols=82  Identities=17%  Similarity=0.298  Sum_probs=49.0

Q ss_pred             CCCceEeecCCcEEEEeeeccC----CCCeEEEEeCCe--e----e----------C----CCCcEEee------CCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH----PIPTISWRRENN--A----I----------L----PNGQTIFT------GSTLQ  129 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~----~~~~~~W~~~~~--~----~----------~----~~~~~~~~------~~~l~  129 (232)
                      .+.......|+++.|.|.....    ....+.|++...  .    +          .    ...+....      +.+|.
T Consensus         5 ~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   84 (119)
T d1neua_           5 TDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV   84 (119)
T ss_dssp             CCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred             CCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence            3555677889999999986421    223689986321  0    0          0    01122211      24799


Q ss_pred             ECCCCCCCCeEEEEEeEeCCCC-ceeeEEEEEE
Q psy15206        130 IPRITKEDRGAYYCVAQNGIGR-GARRKIEVKV  161 (232)
Q Consensus       130 i~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v  161 (232)
                      |.+++..|+|.|.|.+.+..+. .....+.|.|
T Consensus        85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             ECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             ECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            9999999999999999874322 1333445544

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.10  E-value=4.8e-06  Score=49.79  Aligned_cols=67  Identities=27%  Similarity=0.429  Sum_probs=45.0

Q ss_pred             CCCceEeecCCcEEEEeeeccC-CCCeEEEEeCC--eee---C---------CCCcEEe----eCCeEEECCCCCCCCeE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH-PIPTISWRREN--NAI---L---------PNGQTIF----TGSTLQIPRITKEDRGA  140 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~--~~~---~---------~~~~~~~----~~~~l~i~~~~~~~~g~  140 (232)
                      .|....+.+|+++.|.|..... ....+.||+..  ..+   .         ...++..    ....|.|.++..+|+|.
T Consensus         7 ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~   86 (108)
T d2fx7l1           7 SPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAV   86 (108)
T ss_dssp             SSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             eCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEE
Confidence            4566778899999999987543 33458899752  211   0         0111111    12369999999999999


Q ss_pred             EEEEeE
Q psy15206        141 YYCVAQ  146 (232)
Q Consensus       141 y~C~~~  146 (232)
                      |.|.+.
T Consensus        87 YyCa~~   92 (108)
T d2fx7l1          87 YYCQQY   92 (108)
T ss_dssp             EEEEEC
T ss_pred             EeeecC
Confidence            999864

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.3e-06  Score=50.58  Aligned_cols=59  Identities=10%  Similarity=0.286  Sum_probs=41.8

Q ss_pred             eeeeeccCeEEEEEEeecCC--CCeEEEeeC--CEE---e--------------------cCCCeEEEEEeccccCCceE
Q psy15206        173 RIGQALHHDMDLDCHIEAYP--HPILYWAKD--GEI---V--------------------VNDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~--g~~---~--------------------~~~~~~~~~~~~~~~~d~g~  225 (232)
                      .+...+|++++|.|......  ...+.|+|.  +..   +                    .....+.|.+.+++.+|+|.
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~   84 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH   84 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence            45677999999999864332  235789873  111   1                    12346788999999999999


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |.|.+.
T Consensus        85 Y~C~v~   90 (108)
T d1hkfa_          85 YWCRIY   90 (108)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999863

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.09  E-value=8.5e-06  Score=48.02  Aligned_cols=56  Identities=13%  Similarity=0.221  Sum_probs=37.3

Q ss_pred             eeccCeEEEEEEeecCCCC--eEEEeeCCEEec----------CCCeEEEEE-eccccCCceEEEEecC
Q psy15206        176 QALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV----------NDEYHSISN-FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       176 ~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~----------~~~~~~~~~-~~~~~~d~g~Y~C~~~  231 (232)
                      +..|+..+|.|.+.|+.+.  .+.|++||..+.          .++.|.+.. ..+...+...|+|+|.
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~   83 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVT   83 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEE
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEE
Confidence            3468888999999997654  599999998754          223333322 2234455567999874

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.08  E-value=4.9e-06  Score=49.75  Aligned_cols=67  Identities=24%  Similarity=0.456  Sum_probs=45.9

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--ee---eC---------CCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NA---IL---------PNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~---~~---------~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      |..+.+.+|++++|.|.........+.||+..  +.   +.         ...++..    ....|.|.++..+|+|.|.
T Consensus         8 P~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Yy   87 (109)
T d1mqkl_           8 PVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYY   87 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEE
Confidence            55667788999999999865555569999842  11   10         0111111    1237999999999999999


Q ss_pred             EEeEe
Q psy15206        143 CVAQN  147 (232)
Q Consensus       143 C~~~~  147 (232)
                      |.+..
T Consensus        88 CA~~~   92 (109)
T d1mqkl_          88 CQHHY   92 (109)
T ss_dssp             EEECS
T ss_pred             EeeeC
Confidence            98653

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.07  E-value=5.4e-06  Score=49.75  Aligned_cols=64  Identities=17%  Similarity=0.354  Sum_probs=45.6

Q ss_pred             EEeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---ec--------------------CCCeEEEEEeccccC
Q psy15206        167 VTVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---VV--------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       167 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~~--------------------~~~~~~~~~~~~~~~  221 (232)
                      +...+..+.+..|++++|.|.....-...+.|+|.  |..   +.                    ....+.|.+.++..+
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            34456667788999999999876654556999973  211   10                    223567777788889


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |+|.|.|.+
T Consensus        83 Dsa~YyCA~   91 (110)
T d1ac6a_          83 DSAVYYCAL   91 (110)
T ss_dssp             GCEEEEEEE
T ss_pred             CCcccceee
Confidence            999999975

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.07  E-value=1.3e-05  Score=48.20  Aligned_cols=62  Identities=11%  Similarity=0.249  Sum_probs=44.1

Q ss_pred             ccceeeeeccCeEEEEEEeecCCC-CeEEEeeC--CEE---e------------------cCCCeEEEEEeccccCCceE
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPH-PILYWAKD--GEI---V------------------VNDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~--g~~---~------------------~~~~~~~~~~~~~~~~d~g~  225 (232)
                      .|..+.+.+|++++|.|...+... ..+.|+|.  |..   +                  .+...+.|.+..+..+|+|.
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence            455667889999999998765443 35899984  211   1                  02345677888888899999


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |.|.+.
T Consensus        84 YyCa~~   89 (112)
T d1kgcd1          84 YYCILP   89 (112)
T ss_dssp             EEEECC
T ss_pred             EeeeEe
Confidence            999764

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.07  E-value=3.8e-06  Score=49.79  Aligned_cols=60  Identities=15%  Similarity=0.410  Sum_probs=43.7

Q ss_pred             cceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---ec------------------CCCeEEEEEeccccCCceEEE
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---VV------------------NDEYHSISNFGTSEGTTGSLQ  227 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~~------------------~~~~~~~~~~~~~~~d~g~Y~  227 (232)
                      |..+.+..|++++|.|...+.....+.|+|.  |..   +.                  ....+.+.+.++..+|+|.|.
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   84 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYY   84 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEE
Confidence            4456778899999999876554456899974  211   10                  234578888899999999999


Q ss_pred             Eec
Q psy15206        228 CKV  230 (232)
Q Consensus       228 C~~  230 (232)
                      |.+
T Consensus        85 CA~   87 (103)
T d8faba1          85 CQA   87 (103)
T ss_dssp             EEE
T ss_pred             eee
Confidence            975

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.07  E-value=1.5e-05  Score=47.79  Aligned_cols=68  Identities=18%  Similarity=0.339  Sum_probs=46.7

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeC------C------CCcEEe------eCCeEEECCCCCCCCe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAIL------P------NGQTIF------TGSTLQIPRITKEDRG  139 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~------~------~~~~~~------~~~~l~i~~~~~~~~g  139 (232)
                      .+..+.+.+|++++|.|.........+.||+.  |+.+.      .      ..++..      ....|.|.++..+|+|
T Consensus         6 ~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   85 (111)
T d1bd2d1           6 NSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSA   85 (111)
T ss_dssp             CCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred             cCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccE
Confidence            45667788999999999876655567889884  22110      0      011111      1237999999999999


Q ss_pred             EEEEEeEe
Q psy15206        140 AYYCVAQN  147 (232)
Q Consensus       140 ~y~C~~~~  147 (232)
                      .|.|.+..
T Consensus        86 ~YyCa~~~   93 (111)
T d1bd2d1          86 VYFCAAME   93 (111)
T ss_dssp             EEEEEEES
T ss_pred             EEEeeccC
Confidence            99998764

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=6.6e-06  Score=48.60  Aligned_cols=68  Identities=21%  Similarity=0.267  Sum_probs=40.7

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC-----------CCeEEEE----EeccccCCceEE
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN-----------DEYHSIS----NFGTSEGTTGSL  226 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~-----------~~~~~~~----~~~~~~~d~g~Y  226 (232)
                      +|.+.+.+.......++.++|.|.+.|+.+.  .|.|++||..+..           ++.|.+.    +..........|
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~y   84 (102)
T d1q0xl2           5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSY   84 (102)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEE
Confidence            4555544332222346678999999887544  6999999976541           2333322    222222446789


Q ss_pred             EEecC
Q psy15206        227 QCKVP  231 (232)
Q Consensus       227 ~C~~~  231 (232)
                      +|+|.
T Consensus        85 tC~V~   89 (102)
T d1q0xl2          85 SCQVT   89 (102)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99974

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.5e-06  Score=49.37  Aligned_cols=62  Identities=15%  Similarity=0.252  Sum_probs=43.4

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQ  146 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~  146 (232)
                      ..+..|++++|.|... .....+.++|+|...............+.|.+++..|+|.|.|...
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          13 PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             SEEETTCEEEEEEECS-SSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CcccCCCcEEEEECCC-CCCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            4677899999999874 3455788998875432111111122368899999999999999754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.06  E-value=6.1e-06  Score=49.40  Aligned_cols=63  Identities=8%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE---Eec------------------CCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE---IVV------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~---~~~------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|...+.....+.|+|.  |.   .+.                  ....+.|.+.++..+|+|.
T Consensus         8 QsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~   87 (109)
T d1bwwa_           8 QSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIAT   87 (109)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCce
Confidence            345666788999999999987665557889873  11   111                  2345678888889999999


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |.|.+.
T Consensus        88 YyCA~~   93 (109)
T d1bwwa_          88 YYCQQY   93 (109)
T ss_dssp             EEEEEC
T ss_pred             EEEeec
Confidence            999753

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.06  E-value=8.7e-06  Score=47.28  Aligned_cols=53  Identities=15%  Similarity=0.393  Sum_probs=39.3

Q ss_pred             cCeEEEEEEeecCCCCeEEEeeC--CE---Ee-------------------cCCCeEEEEEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHPILYWAKD--GE---IV-------------------VNDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~~~~W~~~--g~---~~-------------------~~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      |++++|.|.........+.|+|.  |.   .+                   .....+.|.+.++..+|+|.|.|.+.
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEe
Confidence            78899999987766667999873  11   01                   02335788888999999999999763

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=6.7e-06  Score=46.12  Aligned_cols=53  Identities=17%  Similarity=0.345  Sum_probs=39.7

Q ss_pred             eccCeEEEEEEeecCCCCeEEEeeCCEEecCCCeEEEEEecc-ccCCceEEEEecC
Q psy15206        177 ALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEYHSISNFGT-SEGTTGSLQCKVP  231 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~-~~~d~g~Y~C~~~  231 (232)
                      ..|.+|+|+|...+.  ..|.|.+++..+.....-.|...+. ..+++|.|.|..+
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECS
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCCCCCcEEEEccccccccCcceEEecC
Confidence            369999999997653  4699999999888654445555553 4589999999643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=98.05  E-value=7.4e-06  Score=47.70  Aligned_cols=54  Identities=15%  Similarity=0.390  Sum_probs=35.0

Q ss_pred             ccCeEEEEEEeecCCCC--eEEEeeCCEEec----------CCCeEEE-EEeccccCCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEAYPHP--ILYWAKDGEIVV----------NDEYHSI-SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~----------~~~~~~~-~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+..++|.|.+.|+.+.  .+.|++||..+.          .++.|.. +...+...+...|+|.|.
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~   81 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLSCRVK   81 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEGGGCTTEEEEEE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeCccCCEEEEEEE
Confidence            45679999999996544  599999987653          2223322 222333455568999873

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.4e-05  Score=48.15  Aligned_cols=69  Identities=20%  Similarity=0.314  Sum_probs=46.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCC-CCeEEEEeCCee--eC--------C----------CCcEEee----CCeEEECCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP-IPTISWRRENNA--IL--------P----------NGQTIFT----GSTLQIPRIT  134 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~~~--~~--------~----------~~~~~~~----~~~l~i~~~~  134 (232)
                      .|...++.+|++++|.|...+.. ...+.|++....  +.        .          ..++...    ...|.|.+++
T Consensus         6 sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~   85 (114)
T d1akjd_           6 SPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFR   85 (114)
T ss_dssp             ECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCC
T ss_pred             CCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCC
Confidence            35566778899999999875533 346899984311  00        0          0111111    1269999999


Q ss_pred             CCCCeEEEEEeEeC
Q psy15206        135 KEDRGAYYCVAQNG  148 (232)
Q Consensus       135 ~~~~g~y~C~~~~~  148 (232)
                      .+|+|.|.|.+...
T Consensus        86 ~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          86 RENEGYYFCSALSN   99 (114)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             CCCCEEEeEeEcCC
Confidence            99999999998753

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.04  E-value=1.1e-05  Score=48.63  Aligned_cols=69  Identities=14%  Similarity=0.276  Sum_probs=45.7

Q ss_pred             CCCceEeecCCcEEEEeeecc-CCCCeEEEEeC--CeeeC-------CCC------cEEe--e----CCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEG-HPIPTISWRRE--NNAIL-------PNG------QTIF--T----GSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~--~~~~~-------~~~------~~~~--~----~~~l~i~~~~~~~  137 (232)
                      .+..+.+.+|++++|.|.... .....+.||+.  ++.+.       ...      +...  .    ...|.|.++..+|
T Consensus         6 ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (114)
T d2ak4d1           6 AQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVD   85 (114)
T ss_dssp             CCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             cCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccccc
Confidence            456677889999999998644 33446889983  22210       000      0001  1    1279999999999


Q ss_pred             CeEEEEEeEeC
Q psy15206        138 RGAYYCVAQNG  148 (232)
Q Consensus       138 ~g~y~C~~~~~  148 (232)
                      +|.|.|.+...
T Consensus        86 sg~YyCa~~~~   96 (114)
T d2ak4d1          86 SAVYFCALSGF   96 (114)
T ss_dssp             CEEEEEEEECS
T ss_pred             CCCceEeCCCC
Confidence            99999987654

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.7e-05  Score=42.18  Aligned_cols=52  Identities=19%  Similarity=0.330  Sum_probs=38.4

Q ss_pred             eccCeEEEEEEeecCCCC--eEEEeeCCEEecCC----CeEEEEEeccccCCceEEEEec
Q psy15206        177 ALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVND----EYHSISNFGTSEGTTGSLQCKV  230 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~----~~~~~~~~~~~~~d~g~Y~C~~  230 (232)
                      ..|..+.|+|.......+  .-.|.|+|..+..+    ......++  ...++|+|.|..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~tey~V~--~~D~SGeY~CVF   67 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVF   67 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCceEEEEe--cCCCCceEEEEE
Confidence            468889999998766543  48999999998743    33444444  368999999974

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=98.02  E-value=2e-05  Score=45.65  Aligned_cols=65  Identities=18%  Similarity=0.364  Sum_probs=39.0

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecCC------------CeEEEE-EeccccCCceEEEE
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVND------------EYHSIS-NFGTSEGTTGSLQC  228 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~~------------~~~~~~-~~~~~~~d~g~Y~C  228 (232)
                      +|.+.+....   ..++.++|.|.+.|+.+.  .+.|++||..+..+            ..|... .......+...|+|
T Consensus         3 pP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC   79 (94)
T d1hyrc1           3 PPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTC   79 (94)
T ss_dssp             CCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEE
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEE
Confidence            5555543221   235678999999997544  59999999876421            123222 22233344457999


Q ss_pred             ecC
Q psy15206        229 KVP  231 (232)
Q Consensus       229 ~~~  231 (232)
                      +|.
T Consensus        80 ~V~   82 (94)
T d1hyrc1          80 YME   82 (94)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            873

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=7.1e-06  Score=48.92  Aligned_cols=43  Identities=19%  Similarity=0.303  Sum_probs=28.7

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      +|.+.+.+.......++.++|.|.+.|+.+.  .|.|++||..+.
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~   49 (107)
T d1mjul2           5 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ   49 (107)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEcc
Confidence            4555444332222346789999999886543  699999987653

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.01  E-value=4.5e-06  Score=49.90  Aligned_cols=63  Identities=10%  Similarity=0.177  Sum_probs=45.3

Q ss_pred             eccceeeeeccCeEEEEEEeecC-CCCeEEEeeC--CE---Eec------------------CCCeEEEEEeccccCCce
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAY-PHPILYWAKD--GE---IVV------------------NDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~W~~~--g~---~~~------------------~~~~~~~~~~~~~~~d~g  224 (232)
                      ..|..+.+..|++++|.|...+. ....+.|+|.  |.   .+.                  ....+.|.+.++..+|+|
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa   85 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA   85 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence            34666778899999999987543 2335889974  21   111                  234578899999999999


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      .|.|.+.
T Consensus        86 ~YyCa~~   92 (108)
T d2fx7l1          86 VYYCQQY   92 (108)
T ss_dssp             EEEEEEC
T ss_pred             EEeeecC
Confidence            9999763

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.01  E-value=2.3e-05  Score=47.15  Aligned_cols=62  Identities=11%  Similarity=0.267  Sum_probs=44.7

Q ss_pred             EeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE-E--e-------------------cCCCeEEEEEeccccCCc
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE-I--V-------------------VNDEYHSISNFGTSEGTT  223 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~-~--~-------------------~~~~~~~~~~~~~~~~d~  223 (232)
                      ...|..+.+..|++++|.|...+. ...+.|+|.  |. .  +                   .....+.|.+.++..+|+
T Consensus         5 ~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   83 (113)
T d1h5ba_           5 EQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDS   83 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGC
T ss_pred             EECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHC
Confidence            334666778899999999987553 346899883  11 1  1                   023456788889999999


Q ss_pred             eEEEEec
Q psy15206        224 GSLQCKV  230 (232)
Q Consensus       224 g~Y~C~~  230 (232)
                      |.|.|.+
T Consensus        84 a~YyCa~   90 (113)
T d1h5ba_          84 GTYFCAA   90 (113)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999975

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.7e-05  Score=48.35  Aligned_cols=68  Identities=22%  Similarity=0.286  Sum_probs=44.4

Q ss_pred             CCceEeecCCcEEEEeeeccC-------CCCeEEEEeCCeeeCC-----------------CCcEEee------CCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGH-------PIPTISWRRENNAILP-----------------NGQTIFT------GSTLQI  130 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-------~~~~~~W~~~~~~~~~-----------------~~~~~~~------~~~l~i  130 (232)
                      +..+++.+|+++.|.|.....       ....+.|++.......                 ..+....      +.+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            455778899999999987321       1124779875432100                 1112211      247999


Q ss_pred             CCCCCCCCeEEEEEeEeC
Q psy15206        131 PRITKEDRGAYYCVAQNG  148 (232)
Q Consensus       131 ~~~~~~~~g~y~C~~~~~  148 (232)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.00  E-value=8.5e-06  Score=49.07  Aligned_cols=68  Identities=25%  Similarity=0.501  Sum_probs=46.4

Q ss_pred             CCCceEeecCCcEEEEeeeccC--CCCeEEEEeC--Cee----eCCCCcEEee------CCeEEECCCCCCCCeEEEEEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH--PIPTISWRRE--NNA----ILPNGQTIFT------GSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~--~~~----~~~~~~~~~~------~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      .|..+...+|+++.|.|...+.  ....+.||+.  +..    +....++...      ...|.|.+++.+|+|.|.|.+
T Consensus         6 ~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~   85 (113)
T d1vesa_           6 TPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA   85 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeee
Confidence            4566778899999999988643  3346899973  221    1112222111      127999999999999999998


Q ss_pred             Ee
Q psy15206        146 QN  147 (232)
Q Consensus       146 ~~  147 (232)
                      ..
T Consensus        86 ~~   87 (113)
T d1vesa_          86 FY   87 (113)
T ss_dssp             EE
T ss_pred             ec
Confidence            64

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.99  E-value=2.1e-05  Score=47.10  Aligned_cols=62  Identities=18%  Similarity=0.327  Sum_probs=44.5

Q ss_pred             EeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE-E--ec----------------------CCCeEEEEEecccc
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE-I--VV----------------------NDEYHSISNFGTSE  220 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~-~--~~----------------------~~~~~~~~~~~~~~  220 (232)
                      ...|..+.+..|++++|.|...+. ...+.|+|.  |. .  +.                      ....+.+.+.++..
T Consensus         5 ~Q~P~~~~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   83 (110)
T d2aq2a1           5 TQSPRNKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATP   83 (110)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCG
T ss_pred             EEeCCeEEEcCCCCEEEEEEECCC-cCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCH
Confidence            344666778899999999986543 457999983  21 1  10                      12357788888899


Q ss_pred             CCceEEEEec
Q psy15206        221 GTTGSLQCKV  230 (232)
Q Consensus       221 ~d~g~Y~C~~  230 (232)
                      +|+|.|.|.+
T Consensus        84 ~Dsa~YyCa~   93 (110)
T d2aq2a1          84 SQTSVYFCAS   93 (110)
T ss_dssp             GGCEEEEEEE
T ss_pred             hhCEEEEEee
Confidence            9999999975

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=2.7e-06  Score=51.86  Aligned_cols=63  Identities=16%  Similarity=0.267  Sum_probs=42.8

Q ss_pred             eccceeeeeccCeEEEEEEeecC----CCCeEEEeeC--CE----Ee---------c----------------CCCeEEE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAY----PHPILYWAKD--GE----IV---------V----------------NDEYHSI  213 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~----p~~~~~W~~~--g~----~~---------~----------------~~~~~~~  213 (232)
                      ..+....+..|++++|.|.....    ....+.|++.  +.    .+         .                ..+.+.|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            34666778899999999986422    2236899862  11    11         0                0122468


Q ss_pred             EEeccccCCceEEEEecC
Q psy15206        214 SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       214 ~~~~~~~~d~g~Y~C~~~  231 (232)
                      .+.++...|+|.|.|.+.
T Consensus        84 ~I~~v~~~DsG~Y~C~v~  101 (119)
T d1neua_          84 VIHNLDYSDNGTFTCDVK  101 (119)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             EECCCChHHCEEEEEEEE
Confidence            888899999999999873

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.99  E-value=3.8e-05  Score=46.29  Aligned_cols=69  Identities=19%  Similarity=0.370  Sum_probs=46.0

Q ss_pred             CCCceEeecCCcEEEEeeecc-CCCCeEEEEeCC--eeeC--------CC-----CcEEe----e--CCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEG-HPIPTISWRREN--NAIL--------PN-----GQTIF----T--GSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~--~~~~--------~~-----~~~~~----~--~~~l~i~~~~~~~  137 (232)
                      .+..+.+.+|+++.|.|.... .....+.||+..  +.+.        ..     .++..    .  ...|.|.+++.+|
T Consensus         5 ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1fo0a_           5 TQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIED   84 (115)
T ss_dssp             CCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             cCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccc
Confidence            456678889999999998754 334468899732  1110        00     11111    1  1369999999999


Q ss_pred             CeEEEEEeEeC
Q psy15206        138 RGAYYCVAQNG  148 (232)
Q Consensus       138 ~g~y~C~~~~~  148 (232)
                      +|.|.|.+...
T Consensus        85 sa~YyCa~~~~   95 (115)
T d1fo0a_          85 SAVYFCAMRGD   95 (115)
T ss_dssp             CEEEEEEEECC
T ss_pred             cccccceeecC
Confidence            99999998754

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.6e-06  Score=48.93  Aligned_cols=44  Identities=23%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             eccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        163 FAPIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       163 ~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      .+|.+.+.+.......++.++|.|.+.|+.+.  .|.|++||..+.
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~   49 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK   49 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECC
Confidence            35666554433333346779999999996544  599999998764

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=97.98  E-value=3.4e-05  Score=46.20  Aligned_cols=69  Identities=25%  Similarity=0.487  Sum_probs=46.1

Q ss_pred             CCCceEeecCCcEEEEeeeccC--CCCeEEEEeCC--ee----eCCCCcEEee------CCeEEECCCCCCCCeEEEEEe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH--PIPTISWRREN--NA----ILPNGQTIFT------GSTLQIPRITKEDRGAYYCVA  145 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~~--~~----~~~~~~~~~~------~~~l~i~~~~~~~~g~y~C~~  145 (232)
                      .|..+...+|++++|.|...+.  ....+.||+..  ..    +....++...      ...|.|.+++.+|+|.|.|.+
T Consensus         5 ~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~   84 (112)
T d1sq2n_           5 TPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGL   84 (112)
T ss_dssp             ECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             cCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEE
Confidence            3555677789999999987542  34569999732  11    1111222111      127999999999999999987


Q ss_pred             EeC
Q psy15206        146 QNG  148 (232)
Q Consensus       146 ~~~  148 (232)
                      ...
T Consensus        85 ~~~   87 (112)
T d1sq2n_          85 GVA   87 (112)
T ss_dssp             CBT
T ss_pred             ecC
Confidence            643

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.98  E-value=8.5e-06  Score=48.10  Aligned_cols=41  Identities=17%  Similarity=0.391  Sum_probs=27.3

Q ss_pred             cEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEe
Q psy15206        165 PIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIV  205 (232)
Q Consensus       165 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~  205 (232)
                      |.+.+.+.......++.++|.|.+.|+.+.  .|.|++||...
T Consensus         5 P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~   47 (102)
T d1igtb4           5 PQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTE   47 (102)
T ss_dssp             CEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             CEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEc
Confidence            444443322223357789999999986443  69999998764

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.97  E-value=2.6e-05  Score=46.83  Aligned_cols=67  Identities=22%  Similarity=0.464  Sum_probs=45.2

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeCCee-----eC---------CCCcEEe----eCCeEEECCCCCCCCeEE
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRRENNA-----IL---------PNGQTIF----TGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~~~-----~~---------~~~~~~~----~~~~l~i~~~~~~~~g~y  141 (232)
                      ..+.+.+|++++|.|...+..  ...+.||+....     +.         ...++..    ....|.|.++..+|++.|
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Y   87 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADY   87 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceE
Confidence            346777899999999876533  456899975321     00         0011111    124799999999999999


Q ss_pred             EEEeEeC
Q psy15206        142 YCVAQNG  148 (232)
Q Consensus       142 ~C~~~~~  148 (232)
                      .|.....
T Consensus        88 yCA~~~~   94 (114)
T d2rhea_          88 YCAAWND   94 (114)
T ss_dssp             EEEEEET
T ss_pred             EEeecCC
Confidence            9987643

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=9.7e-06  Score=47.85  Aligned_cols=68  Identities=13%  Similarity=0.245  Sum_probs=39.7

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec----------CCCeEEEE----EeccccCCceEEE
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV----------NDEYHSIS----NFGTSEGTTGSLQ  227 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~----------~~~~~~~~----~~~~~~~d~g~Y~  227 (232)
                      .|.+.+.+..........+.|.|.+.|+.+.  .|.|++||....          .++.|.+.    +..........|+
T Consensus         4 ~P~V~i~~p~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~yt   83 (102)
T d1i1ca2           4 GPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFT   83 (102)
T ss_dssp             CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEE
T ss_pred             CCEEEEECCCHHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEE
Confidence            3444443322223346788999999887654  599999987643          22333332    2222224455799


Q ss_pred             EecC
Q psy15206        228 CKVP  231 (232)
Q Consensus       228 C~~~  231 (232)
                      |+|.
T Consensus        84 C~V~   87 (102)
T d1i1ca2          84 CSVL   87 (102)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9983

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.97  E-value=1.9e-05  Score=47.32  Aligned_cols=62  Identities=10%  Similarity=0.207  Sum_probs=43.7

Q ss_pred             ccceeeeeccCeEEEEEEeecC----CCCeEEEeeC--CEE---e------------------cCCCeEEEEEeccccCC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAY----PHPILYWAKD--GEI---V------------------VNDEYHSISNFGTSEGT  222 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~----p~~~~~W~~~--g~~---~------------------~~~~~~~~~~~~~~~~d  222 (232)
                      .|..+.+..|++++|.|.....    ....+.|+|.  |..   +                  .....+.|.+.++..+|
T Consensus         7 sP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   86 (111)
T d1j05a_           7 SPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADD   86 (111)
T ss_dssp             ECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGG
T ss_pred             cCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccccc
Confidence            3556667789999999976432    1224999974  221   1                  02456889999999999


Q ss_pred             ceEEEEecC
Q psy15206        223 TGSLQCKVP  231 (232)
Q Consensus       223 ~g~Y~C~~~  231 (232)
                      +|.|.|.+.
T Consensus        87 sa~YyCa~~   95 (111)
T d1j05a_          87 VATYYCQQT   95 (111)
T ss_dssp             CEEEEEEEC
T ss_pred             CccEEEeec
Confidence            999999753

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4.7e-05  Score=45.43  Aligned_cols=65  Identities=22%  Similarity=0.425  Sum_probs=40.3

Q ss_pred             eEeecCCcEEEEeeeccCCC---CeEE--EEeCCeeeC----------C------CCcE--EeeCCeEEECCCCCCCCeE
Q psy15206         84 SVAKEGQSVQLECHAEGHPI---PTIS--WRRENNAIL----------P------NGQT--IFTGSTLQIPRITKEDRGA  140 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~---~~~~--W~~~~~~~~----------~------~~~~--~~~~~~l~i~~~~~~~~g~  140 (232)
                      +....|+++.|.|.......   ..+.  |.++.....          .      ..+.  ...+.+|.|.+++.+|.|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            35567999999998754222   2233  444332210          0      0011  1123579999999999999


Q ss_pred             EEEEeEeC
Q psy15206        141 YYCVAQNG  148 (232)
Q Consensus       141 y~C~~~~~  148 (232)
                      |.|.+...
T Consensus        84 Y~C~V~~~   91 (110)
T d1ncna_          84 YQCIIHHK   91 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99999754

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.9e-06  Score=52.90  Aligned_cols=59  Identities=24%  Similarity=0.296  Sum_probs=40.5

Q ss_pred             eeeeeccCeEEEEEEeecCCCC----eEEEeeC--CE--------------Eec-----------------CCCeEEEEE
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHP----ILYWAKD--GE--------------IVV-----------------NDEYHSISN  215 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~----~~~W~~~--g~--------------~~~-----------------~~~~~~~~~  215 (232)
                      .+....|+++.|.|.....+..    .+.|++.  +.              ...                 ....+.|.+
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            3567799999999997654332    4889862  10              000                 012356888


Q ss_pred             eccccCCceEEEEecC
Q psy15206        216 FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       216 ~~~~~~d~g~Y~C~~~  231 (232)
                      .++..+|+|.|.|.+.
T Consensus        93 ~~v~~~D~G~Y~C~v~  108 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVK  108 (124)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccEEccCEEEEEEEE
Confidence            8999999999999873

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.96  E-value=1.6e-05  Score=47.99  Aligned_cols=64  Identities=20%  Similarity=0.318  Sum_probs=44.7

Q ss_pred             EeccceeeeeccCeEEEEEEeec-CCCCeEEEeeC--C-EE--ec---------------------CCCeEEEEEecccc
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEA-YPHPILYWAKD--G-EI--VV---------------------NDEYHSISNFGTSE  220 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~-~p~~~~~W~~~--g-~~--~~---------------------~~~~~~~~~~~~~~  220 (232)
                      ...+..+.+.+|++|+|.|.... .....+.|+|.  | ..  +.                     ....+.|.+.++..
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            34456677889999999998643 33446889973  1 11  10                     12346788888899


Q ss_pred             CCceEEEEecC
Q psy15206        221 GTTGSLQCKVP  231 (232)
Q Consensus       221 ~d~g~Y~C~~~  231 (232)
                      +|+|.|.|.+.
T Consensus        83 ~Dsa~YyCa~~   93 (115)
T d1fo0a_          83 EDSAVYFCAMR   93 (115)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccccccceee
Confidence            99999999853

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=6.7e-06  Score=49.32  Aligned_cols=58  Identities=14%  Similarity=0.368  Sum_probs=38.2

Q ss_pred             eeeeccCeEEEEEEeecCCCC---e--EEEeeCCEE-ec----------------------CCCeEEEEEeccccCCceE
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP---I--LYWAKDGEI-VV----------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~---~--~~W~~~g~~-~~----------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      +.+..|++++|.|.....+..   .  +.|.++... +.                      ..+.+.|.+.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            356789999999987533322   2  344444321 10                      1234578899999999999


Q ss_pred             EEEecC
Q psy15206        226 LQCKVP  231 (232)
Q Consensus       226 Y~C~~~  231 (232)
                      |.|.+.
T Consensus        84 Y~C~V~   89 (110)
T d1ncna_          84 YQCIIH   89 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            999873

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.95  E-value=2.2e-05  Score=47.08  Aligned_cols=66  Identities=24%  Similarity=0.439  Sum_probs=43.3

Q ss_pred             CCceEeecCCcEEEEeeeccC-----CCCeEEEEeCC--eee---C---------CCCcEEe----eCCeEEECCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGH-----PIPTISWRREN--NAI---L---------PNGQTIF----TGSTLQIPRITKED  137 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~-----~~~~~~W~~~~--~~~---~---------~~~~~~~----~~~~l~i~~~~~~~  137 (232)
                      |..+.+.+|++++|.|...+.     ....+.|++..  ..+   .         ...++..    ....|.|.++..+|
T Consensus         8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD   87 (112)
T d1ncwl1           8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED   87 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence            566778899999999986432     22358898742  211   0         0112211    12379999999999


Q ss_pred             CeEEEEEeE
Q psy15206        138 RGAYYCVAQ  146 (232)
Q Consensus       138 ~g~y~C~~~  146 (232)
                      ++.|.|...
T Consensus        88 sAvYYC~~~   96 (112)
T d1ncwl1          88 LGVYYCWQG   96 (112)
T ss_dssp             CEEEEEEEC
T ss_pred             CEeEEEEcC
Confidence            999999643

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.95  E-value=2.1e-05  Score=47.27  Aligned_cols=61  Identities=11%  Similarity=0.221  Sum_probs=43.4

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEEe-------------------------cCCCeEEEEEeccccCC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEIV-------------------------VNDEYHSISNFGTSEGT  222 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~~-------------------------~~~~~~~~~~~~~~~~d  222 (232)
                      .|..+.+..|++++|.|...+. ...+.|+|.  |...                         .....+.|.+.++..+|
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (113)
T d2ntsp1           5 TPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGD   83 (113)
T ss_dssp             ECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccc
Confidence            3555677899999999986443 346899983  2111                         02235788888999999


Q ss_pred             ceEEEEecC
Q psy15206        223 TGSLQCKVP  231 (232)
Q Consensus       223 ~g~Y~C~~~  231 (232)
                      +|.|.|.+.
T Consensus        84 sa~YyCA~~   92 (113)
T d2ntsp1          84 SALYLCASS   92 (113)
T ss_dssp             CEEEEEEEE
T ss_pred             ceeeeeeee
Confidence            999999753

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=4.4e-05  Score=45.17  Aligned_cols=67  Identities=22%  Similarity=0.405  Sum_probs=45.3

Q ss_pred             eEeecCCcEEEEeeeccCCC----CeEEEEeCCeeeCC--C----------CcEEe---eCCeEEECCCCCCCCeEEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPI----PTISWRRENNAILP--N----------GQTIF---TGSTLQIPRITKEDRGAYYCV  144 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~----~~~~W~~~~~~~~~--~----------~~~~~---~~~~l~i~~~~~~~~g~y~C~  144 (232)
                      ++...|+++.|.|.......    ..+.|.+++..+..  .          .+...   .+.+|.|.+++.+|.|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            45668999999998753221    34778877654311  0          11111   134899999999999999999


Q ss_pred             eEeCCC
Q psy15206        145 AQNGIG  150 (232)
Q Consensus       145 ~~~~~~  150 (232)
                      +.+..+
T Consensus        84 V~~~~~   89 (105)
T d1dr9a1          84 VLKYEK   89 (105)
T ss_dssp             EEECCT
T ss_pred             EEeCCC
Confidence            987543

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.94  E-value=1.1e-05  Score=48.09  Aligned_cols=68  Identities=21%  Similarity=0.396  Sum_probs=45.8

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee---C---------CCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI---L---------PNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~---~---------~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      +..+.+.+|++++|.|.........+.|++..  ..+   .         ...++..    ....|.|.+++.+|++.|.
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYy   86 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYY   86 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEE
Confidence            34567789999999999765445579999742  211   0         0111111    1237899999999999999


Q ss_pred             EEeEeC
Q psy15206        143 CVAQNG  148 (232)
Q Consensus       143 C~~~~~  148 (232)
                      |.....
T Consensus        87 CA~~~~   92 (109)
T d1w72l1          87 CQVWDS   92 (109)
T ss_dssp             EEEEET
T ss_pred             EEecCC
Confidence            987653

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.94  E-value=2.8e-05  Score=46.51  Aligned_cols=67  Identities=21%  Similarity=0.403  Sum_probs=45.0

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeC--Ceee---C---C---------CCcE-E----eeCCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAI---L---P---------NGQT-I----FTGSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~---~---~---------~~~~-~----~~~~~l~i~~~~~~~  137 (232)
                      .|....+.+|++++|.|...+ ....+.||+.  |..+   .   .         ..++ .    .....|.|.++..+|
T Consensus         7 ~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (110)
T d2aq2a1           7 SPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQ   85 (110)
T ss_dssp             ECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhh
Confidence            355667789999999998754 3457999983  2211   0   0         0011 1    112468899999999


Q ss_pred             CeEEEEEeEe
Q psy15206        138 RGAYYCVAQN  147 (232)
Q Consensus       138 ~g~y~C~~~~  147 (232)
                      +|.|.|....
T Consensus        86 sa~YyCa~~~   95 (110)
T d2aq2a1          86 TSVYFCASGG   95 (110)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEEeeCC
Confidence            9999998764

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.94  E-value=1.7e-05  Score=46.01  Aligned_cols=60  Identities=20%  Similarity=0.390  Sum_probs=40.7

Q ss_pred             CCcEEEEeeeccCCCCeEEEEeCCe--e---e---CC-----CCcEEee------CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         89 GQSVQLECHAEGHPIPTISWRRENN--A---I---LP-----NGQTIFT------GSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        89 g~~~~l~C~~~~~~~~~~~W~~~~~--~---~---~~-----~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      |++++|.|.........+.||+...  .   +   ..     ..++...      ..+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            6889999998766666799997321  1   0   00     1111111      136999999999999999987643

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.93  E-value=2e-05  Score=47.23  Aligned_cols=67  Identities=22%  Similarity=0.398  Sum_probs=43.7

Q ss_pred             CCCceEeecCCcEEEEeeeccC-----CCCeEEEEeCC--eeeC------------CCCcEEee----CCeEEECCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH-----PIPTISWRREN--NAIL------------PNGQTIFT----GSTLQIPRITKE  136 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-----~~~~~~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~  136 (232)
                      .+..+.+.+|++++|.|...+.     ....+.|++..  ..+.            ...++...    ...|.|.++..+
T Consensus         7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~   86 (112)
T d1mjul1           7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAE   86 (112)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcccc
Confidence            4556777899999999987542     23458998742  2110            01111111    136999999999


Q ss_pred             CCeEEEEEeE
Q psy15206        137 DRGAYYCVAQ  146 (232)
Q Consensus       137 ~~g~y~C~~~  146 (232)
                      |++.|.|...
T Consensus        87 DsAvYyCa~~   96 (112)
T d1mjul1          87 DVGVYYCLQH   96 (112)
T ss_dssp             GCEEEEEEEC
T ss_pred             CCceEEEEeC
Confidence            9999999643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.93  E-value=2.8e-05  Score=47.10  Aligned_cols=69  Identities=30%  Similarity=0.592  Sum_probs=47.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeC-----------------CCCcEEee-----CCeEEECCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAIL-----------------PNGQTIFT-----GSTLQIPRITK  135 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~-----------------~~~~~~~~-----~~~l~i~~~~~  135 (232)
                      .|....+.+|+++.|.|...+.....+.||+.  |+.+.                 ...++...     ...|.|.++..
T Consensus         7 ~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   86 (118)
T d2ij0c1           7 HPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHP   86 (118)
T ss_dssp             ECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCG
T ss_pred             cCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccccc
Confidence            35556778899999999986665667999984  22110                 01122111     13699999999


Q ss_pred             CCCeEEEEEeEeC
Q psy15206        136 EDRGAYYCVAQNG  148 (232)
Q Consensus       136 ~~~g~y~C~~~~~  148 (232)
                      +|+|.|.|.+...
T Consensus        87 ~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          87 EDSGFYVCSALAG   99 (118)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             ccCceEEEEEecC
Confidence            9999999998654

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.92  E-value=2.4e-05  Score=46.84  Aligned_cols=68  Identities=22%  Similarity=0.384  Sum_probs=44.4

Q ss_pred             CCCceEeecCCcEEEEeeeccC----CCCeEEEEeCC--eee----C--------CCCcEEee----CCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH----PIPTISWRREN--NAI----L--------PNGQTIFT----GSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~----~~~~~~W~~~~--~~~----~--------~~~~~~~~----~~~l~i~~~~~~~  137 (232)
                      .|..+.+.+|+++.|.|.....    ....+.||+..  ..+    .        ...++...    ...|.|.++..+|
T Consensus         7 sP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~D   86 (111)
T d2gsia1           7 SPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEED   86 (111)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             eCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccC
Confidence            3556778899999999986431    12348998842  211    0        01122111    2379999999999


Q ss_pred             CeEEEEEeEe
Q psy15206        138 RGAYYCVAQN  147 (232)
Q Consensus       138 ~g~y~C~~~~  147 (232)
                      ++.|.|....
T Consensus        87 sA~YyCa~~~   96 (111)
T d2gsia1          87 AATYYCSHIR   96 (111)
T ss_dssp             CEEEEEEECS
T ss_pred             CceEEEEECC
Confidence            9999997543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.92  E-value=8.9e-06  Score=48.81  Aligned_cols=67  Identities=22%  Similarity=0.344  Sum_probs=43.6

Q ss_pred             CCceEeecCCcEEEEeeeccC----CCCeEEEEeC--CeeeC------------CCCcEEee----CCeEEECCCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGH----PIPTISWRRE--NNAIL------------PNGQTIFT----GSTLQIPRITKEDR  138 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~----~~~~~~W~~~--~~~~~------------~~~~~~~~----~~~l~i~~~~~~~~  138 (232)
                      |..+.+.+|++++|.|.....    ....+.||+.  |..+.            ...++...    ...|.|.++..+|+
T Consensus         8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   87 (111)
T d1j05a_           8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV   87 (111)
T ss_dssp             CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence            555667789999999986431    2234999984  22110            01111111    23799999999999


Q ss_pred             eEEEEEeEe
Q psy15206        139 GAYYCVAQN  147 (232)
Q Consensus       139 g~y~C~~~~  147 (232)
                      |.|.|...+
T Consensus        88 a~YyCa~~~   96 (111)
T d1j05a_          88 ATYYCQQTN   96 (111)
T ss_dssp             EEEEEEECS
T ss_pred             ccEEEeecC
Confidence            999997653

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.92  E-value=6.3e-06  Score=49.21  Aligned_cols=61  Identities=16%  Similarity=0.321  Sum_probs=43.7

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---ec------------------CCCeEEEEEeccccCCceEE
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---VV------------------NDEYHSISNFGTSEGTTGSL  226 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~~------------------~~~~~~~~~~~~~~~d~g~Y  226 (232)
                      +|..+.+.+|++++|.|.........+.|+|.  |..   +.                  ....+.+.+.++..+|+|.|
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavY   85 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADY   85 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEE
Confidence            34456778899999999865544446999974  211   10                  23456888888899999999


Q ss_pred             EEec
Q psy15206        227 QCKV  230 (232)
Q Consensus       227 ~C~~  230 (232)
                      .|.+
T Consensus        86 yCA~   89 (109)
T d1w72l1          86 YCQV   89 (109)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9975

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.6e-05  Score=46.91  Aligned_cols=29  Identities=14%  Similarity=0.456  Sum_probs=23.1

Q ss_pred             ccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        178 LHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      .++.++|.|.+.|+.+.  .|.|++||....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~   48 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPEN   48 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECC
Confidence            57789999999986443  699999987653

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.91  E-value=7.3e-06  Score=49.34  Aligned_cols=60  Identities=10%  Similarity=0.207  Sum_probs=43.8

Q ss_pred             cceeeeeccCeEEEEEEeecCC--CCeEEEeeCC--EE---ec------------------CCCeEEEEEeccccCCceE
Q psy15206        171 STRIGQALHHDMDLDCHIEAYP--HPILYWAKDG--EI---VV------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~g--~~---~~------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      +..+.+..|++++|.|...+..  ...+.|+|..  ..   +.                  ....+.|.+.++..+|++.
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~   86 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEAD   86 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCce
Confidence            3356777899999999976553  3468999752  11   10                  2346788889999999999


Q ss_pred             EEEec
Q psy15206        226 LQCKV  230 (232)
Q Consensus       226 Y~C~~  230 (232)
                      |.|.+
T Consensus        87 YyCA~   91 (114)
T d2rhea_          87 YYCAA   91 (114)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99975

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.90  E-value=1.6e-05  Score=47.07  Aligned_cols=61  Identities=8%  Similarity=0.189  Sum_probs=44.2

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeCC--EE---e------------------cCCCeEEEEEeccccCCceE
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG--EI---V------------------VNDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g--~~---~------------------~~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..|..+.+..|++++|.|..... ...+.|+|..  ..   +                  ..+..+.|.+.++..+|+|.
T Consensus         5 QsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~   83 (104)
T d1yqvl1           5 QSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAAT   83 (104)
T ss_dssp             EESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             CcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCe
Confidence            44666778899999999986433 3458999741  11   1                  02345789999999999999


Q ss_pred             EEEec
Q psy15206        226 LQCKV  230 (232)
Q Consensus       226 Y~C~~  230 (232)
                      |.|..
T Consensus        84 YyCa~   88 (104)
T d1yqvl1          84 YYCQQ   88 (104)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99975

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.90  E-value=2.5e-05  Score=46.72  Aligned_cols=62  Identities=10%  Similarity=0.250  Sum_probs=43.0

Q ss_pred             eccceeeeeccCeEEEEEEeecC----CCCeEEEeeC--CEE---e-c-----------------CCCeEEEEEeccccC
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAY----PHPILYWAKD--GEI---V-V-----------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~----p~~~~~W~~~--g~~---~-~-----------------~~~~~~~~~~~~~~~  221 (232)
                      ..|..+.+..|++++|.|...+.    ....+.|+|.  |..   + .                 ....+.|.+.++..+
T Consensus         6 QsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~   85 (111)
T d2gsia1           6 QSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEE   85 (111)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccccc
Confidence            34666778899999999976432    1123899874  211   1 0                 223577888889999


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |+|.|.|.+
T Consensus        86 DsA~YyCa~   94 (111)
T d2gsia1          86 DAATYYCSH   94 (111)
T ss_dssp             GCEEEEEEE
T ss_pred             CCceEEEEE
Confidence            999999975

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.90  E-value=1.5e-05  Score=46.90  Aligned_cols=29  Identities=17%  Similarity=0.352  Sum_probs=22.5

Q ss_pred             ccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        178 LHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      ..+.++|.|.+.|+.+.  .|.|++||..+.
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~   47 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAE   47 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEcc
Confidence            46678999999996433  599999997653

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=8.1e-06  Score=49.21  Aligned_cols=58  Identities=14%  Similarity=0.264  Sum_probs=40.5

Q ss_pred             eeeeccCeEEEEEEeec--CCCCeEEEeeC--CE---Ee-----------------------cCCCeEEEEEeccccCCc
Q psy15206        174 IGQALHHDMDLDCHIEA--YPHPILYWAKD--GE---IV-----------------------VNDEYHSISNFGTSEGTT  223 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~--~p~~~~~W~~~--g~---~~-----------------------~~~~~~~~~~~~~~~~d~  223 (232)
                      ..+.+|++++|.|...+  .....+.|+|.  |.   .+                       .....+.|.+.++..+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            45668999999998643  23446889873  21   11                       022346788889999999


Q ss_pred             eEEEEecC
Q psy15206        224 GSLQCKVP  231 (232)
Q Consensus       224 g~Y~C~~~  231 (232)
                      |.|.|.+.
T Consensus        89 g~Y~Cav~   96 (113)
T d1smoa_          89 GLYQCVIY   96 (113)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEEE
Confidence            99999874

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.89  E-value=2.3e-05  Score=47.23  Aligned_cols=60  Identities=17%  Similarity=0.315  Sum_probs=44.0

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE--E-e--------------------cCCCeEEEEEeccccCCce
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE--I-V--------------------VNDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~--~-~--------------------~~~~~~~~~~~~~~~~d~g  224 (232)
                      .|..+.+..|++++|.|...+. ...+.|+|.  |.  . +                    .....+.|.+.++..+|+|
T Consensus         6 ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   84 (115)
T d1ogad1           6 SPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTG   84 (115)
T ss_dssp             ECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCE
T ss_pred             CCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCcccee
Confidence            4556678899999999987554 336899873  11  1 0                    0234678888899999999


Q ss_pred             EEEEec
Q psy15206        225 SLQCKV  230 (232)
Q Consensus       225 ~Y~C~~  230 (232)
                      .|.|.+
T Consensus        85 ~YyCa~   90 (115)
T d1ogad1          85 LYLCAG   90 (115)
T ss_dssp             EEEEEE
T ss_pred             eEcccc
Confidence            999975

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=3.9e-05  Score=45.73  Aligned_cols=59  Identities=8%  Similarity=0.233  Sum_probs=41.6

Q ss_pred             ceeeeeccCeEEEEEEeecCCCC---eEEEeeC--C-EE--ec------------------CCCeEEEEEeccccCCceE
Q psy15206        172 TRIGQALHHDMDLDCHIEAYPHP---ILYWAKD--G-EI--VV------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~--g-~~--~~------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      ..+.+..|++++|.|...+....   .+.|+|.  | ..  +.                  ....+.|.+.++..+|+|.
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~   87 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAI   87 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEE
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEe
Confidence            35667899999999998643322   3889973  2 21  10                  2345678888899999999


Q ss_pred             EEEec
Q psy15206        226 LQCKV  230 (232)
Q Consensus       226 Y~C~~  230 (232)
                      |.|.+
T Consensus        88 YyCa~   92 (110)
T d1oaql_          88 YFCAL   92 (110)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99975

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.89  E-value=2.9e-05  Score=46.50  Aligned_cols=60  Identities=17%  Similarity=0.306  Sum_probs=42.8

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---ec-----------------------CCCeEEEEEeccccC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---VV-----------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~~-----------------------~~~~~~~~~~~~~~~  221 (232)
                      .|..+.+..|++++|.|...+. ...+.|+|.  |..   +.                       .+..+.|.+.++..+
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~   83 (111)
T d2esve1           5 FPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELE   83 (111)
T ss_dssp             ECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGG
T ss_pred             CCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccC
Confidence            3556678899999999985443 346899874  211   10                       123478888999999


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |+|.|.|.+
T Consensus        84 Dsa~YyCa~   92 (111)
T d2esve1          84 DSGVYFCAS   92 (111)
T ss_dssp             GCEEEEEEE
T ss_pred             CCceEEEee
Confidence            999999974

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.89  E-value=2.3e-05  Score=46.96  Aligned_cols=62  Identities=11%  Similarity=0.233  Sum_probs=44.1

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe-----------------------cCCCeEEEEEeccccC
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV-----------------------VNDEYHSISNFGTSEG  221 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~-----------------------~~~~~~~~~~~~~~~~  221 (232)
                      .+|..+.+..|++++|.|...+....  .+.|+|.  +..+                       .....+.|.+.++..+
T Consensus         5 tQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE   84 (111)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcc
Confidence            34566778899999999987655322  4899874  2110                       0234678888888889


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |+|.|.|..
T Consensus        85 Dsa~YyCA~   93 (111)
T d1cd0a_          85 DEADYYCQS   93 (111)
T ss_dssp             GCEEEEEEE
T ss_pred             cCcEEEEee
Confidence            999999964

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.88  E-value=1.1e-05  Score=48.92  Aligned_cols=66  Identities=26%  Similarity=0.427  Sum_probs=44.8

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee---C---------CCCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI---L---------PNGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~---~---------~~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      |..+.+.+|+++.|.|...+.....+.||+..  ..+   .         ...++..    ....|.|.++..+|+|.|.
T Consensus         8 P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYy   87 (119)
T d1f3rb2           8 PSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYF   87 (119)
T ss_dssp             TSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEE
T ss_pred             CCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEE
Confidence            45566778999999999866555679999842  111   0         0111111    1236999999999999999


Q ss_pred             EEeE
Q psy15206        143 CVAQ  146 (232)
Q Consensus       143 C~~~  146 (232)
                      |...
T Consensus        88 Ca~~   91 (119)
T d1f3rb2          88 CYQY   91 (119)
T ss_dssp             EEEE
T ss_pred             eecc
Confidence            9754

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.7e-05  Score=47.21  Aligned_cols=43  Identities=16%  Similarity=0.239  Sum_probs=28.4

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      +|.+.+.+.......++.++|.|.+.|+.+.  .|.|++||..+.
T Consensus         5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~   49 (107)
T d1c5cl2           5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQS   49 (107)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECC
Confidence            4555543322223346789999999886433  699999987643

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.88  E-value=3.4e-05  Score=45.08  Aligned_cols=64  Identities=17%  Similarity=0.194  Sum_probs=42.9

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCc-EEee--CCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQ-TIFT--GSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~-~~~~--~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      ..+..|.+++|.|... .....+.|+|+|........ ....  ...+.|..+...|+|.|.|.....
T Consensus        15 ~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2          15 PTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             SEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CcccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            4677899999999875 34557889998854321111 1111  124577788888999999987643

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.87  E-value=4.3e-05  Score=45.88  Aligned_cols=68  Identities=31%  Similarity=0.622  Sum_probs=45.4

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eeeC-----CCC-----cE--Ee-----eCCeEEECCCCCCCCeE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAIL-----PNG-----QT--IF-----TGSTLQIPRITKEDRGA  140 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~~-----~~~-----~~--~~-----~~~~l~i~~~~~~~~g~  140 (232)
                      .+..+.+.+|+++.|.|.... ....+.||+..  ..+.     ...     ..  ..     ....|.|.++..+|+|.
T Consensus         7 ~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (113)
T d1h5ba_           7 SPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGT   85 (113)
T ss_dssp             ECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEE
T ss_pred             CCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEE
Confidence            355677889999999999764 34468999832  2110     000     00  00     11369999999999999


Q ss_pred             EEEEeEeC
Q psy15206        141 YYCVAQNG  148 (232)
Q Consensus       141 y~C~~~~~  148 (232)
                      |.|.+...
T Consensus        86 YyCa~~~~   93 (113)
T d1h5ba_          86 YFCAAEAS   93 (113)
T ss_dssp             EEEEEECS
T ss_pred             EEEEecCC
Confidence            99987654

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=4.2e-05  Score=46.28  Aligned_cols=61  Identities=15%  Similarity=0.217  Sum_probs=42.7

Q ss_pred             cceeeeeccCeEEEEEEeecCCCC---eEEEeeC--CEEe---c---------------------CCCeEEEEEeccccC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHP---ILYWAKD--GEIV---V---------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~--g~~~---~---------------------~~~~~~~~~~~~~~~  221 (232)
                      |..+.+..|++++|.|........   .+.|+|.  |+.+   .                     ++..+.|.+.+...+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            445567789999999997543333   3789983  2211   0                     133568888899999


Q ss_pred             CceEEEEecC
Q psy15206        222 TTGSLQCKVP  231 (232)
Q Consensus       222 d~g~Y~C~~~  231 (232)
                      |+|.|.|.+.
T Consensus        86 Dsa~YyCa~~   95 (117)
T d1dqta_          86 DTGLYLCKVE   95 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCEeEEEEEe
Confidence            9999999763

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2e-05  Score=47.39  Aligned_cols=65  Identities=22%  Similarity=0.403  Sum_probs=42.5

Q ss_pred             eEeecCCcEEEEeeecc--CCCCeEEEEeCCe--e---eC---C---------CCcEEee----C--CeEEECCCCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEG--HPIPTISWRRENN--A---IL---P---------NGQTIFT----G--STLQIPRITKEDR  138 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~--~~~~~~~W~~~~~--~---~~---~---------~~~~~~~----~--~~l~i~~~~~~~~  138 (232)
                      ..+.+|+++.|.|...+  .....+.|++...  .   +.   .         ..++...    .  ..|.|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            45668999999998753  2344688997421  1   00   0         0112111    1  2589999999999


Q ss_pred             eEEEEEeEeC
Q psy15206        139 GAYYCVAQNG  148 (232)
Q Consensus       139 g~y~C~~~~~  148 (232)
                      |.|.|.+...
T Consensus        89 g~Y~Cav~~~   98 (113)
T d1smoa_          89 GLYQCVIYQP   98 (113)
T ss_dssp             EEEEEEECCT
T ss_pred             ceEEEEEECC
Confidence            9999998654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.86  E-value=2.6e-05  Score=46.77  Aligned_cols=68  Identities=24%  Similarity=0.461  Sum_probs=45.4

Q ss_pred             CCceEeecCCcEEEEeeeccCC---CCeEEEEeCC--eee---C---------CCCcEEe----eCCeEEECCCCCCCCe
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP---IPTISWRREN--NAI---L---------PNGQTIF----TGSTLQIPRITKEDRG  139 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~---~~~~~W~~~~--~~~---~---------~~~~~~~----~~~~l~i~~~~~~~~g  139 (232)
                      |..+.+.+|+++.|.|...+..   ...+.||+..  ..+   .         ...++..    ....|.|.+++.+|++
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            5567788999999999976532   2358999742  111   0         0011111    2347999999999999


Q ss_pred             EEEEEeEeC
Q psy15206        140 AYYCVAQNG  148 (232)
Q Consensus       140 ~y~C~~~~~  148 (232)
                      .|.|.....
T Consensus        87 ~YyCa~~~~   95 (112)
T d1lgva1          87 DYYCSSYDG   95 (112)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecC
Confidence            999987643

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.85  E-value=5.1e-05  Score=46.06  Aligned_cols=61  Identities=15%  Similarity=0.357  Sum_probs=42.8

Q ss_pred             ccceeeeeccCeEEEEEEeecCC--CCeEEEeeC--CE--E-ec--------------------CCCeEEEEEeccccCC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYP--HPILYWAKD--GE--I-VV--------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~--g~--~-~~--------------------~~~~~~~~~~~~~~~d  222 (232)
                      .+..+.+..|++++|.|...+..  ...+.|+|.  |.  . +.                    ....+.|.+.++..+|
T Consensus         7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~D   86 (120)
T d1hxma1           7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD   86 (120)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             cCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccC
Confidence            44556678999999999987653  235899973  21  1 10                    1234677778888899


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      +|.|.|..
T Consensus        87 sa~YyCA~   94 (120)
T d1hxma1          87 EGSYYCAC   94 (120)
T ss_dssp             CEEEEEEE
T ss_pred             CceeecCc
Confidence            99999965

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.85  E-value=3.9e-05  Score=45.95  Aligned_cols=61  Identities=11%  Similarity=0.249  Sum_probs=43.3

Q ss_pred             ccceeeeeccCeEEEEEEeecCC-----CCeEEEeeC--CEE---e------------------cCCCeEEEEEeccccC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYP-----HPILYWAKD--GEI---V------------------VNDEYHSISNFGTSEG  221 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p-----~~~~~W~~~--g~~---~------------------~~~~~~~~~~~~~~~~  221 (232)
                      .|..+.+.+|++++|.|...+..     ...+.|++.  |..   +                  .....+.|.+.++..+
T Consensus         7 ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~   86 (112)
T d1mjul1           7 AAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAE   86 (112)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCcccc
Confidence            35566778899999999875531     335899874  211   1                  1334678888999999


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |++.|.|..
T Consensus        87 DsAvYyCa~   95 (112)
T d1mjul1          87 DVGVYYCLQ   95 (112)
T ss_dssp             GCEEEEEEE
T ss_pred             CCceEEEEe
Confidence            999999964

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.84  E-value=2.4e-05  Score=47.14  Aligned_cols=60  Identities=15%  Similarity=0.354  Sum_probs=43.2

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---e----------------------cCCCeEEEEEeccccCC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---V----------------------VNDEYHSISNFGTSEGT  222 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~----------------------~~~~~~~~~~~~~~~~d  222 (232)
                      .|..+.+.+|++++|.|... .....+.|+|.  |..   +                      .....+.|.+.++..+|
T Consensus         5 sP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   83 (114)
T ss_dssp             SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCC
Confidence            35566788999999999974 33457999974  211   1                      01335678888999999


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      +|.|.|.+
T Consensus        84 Sa~YyCa~   91 (114)
T d1ogae1          84 TAFYLCAS   91 (114)
T ss_dssp             CEEEEEEE
T ss_pred             ceeEEEee
Confidence            99999975

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.84  E-value=3.8e-05  Score=46.04  Aligned_cols=60  Identities=15%  Similarity=0.302  Sum_probs=42.6

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CE---Eec-----------------------CCCeEEEEEeccccC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GE---IVV-----------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~---~~~-----------------------~~~~~~~~~~~~~~~  221 (232)
                      .|..+.+.+|++++|.|...+ ....+.|+|.  |.   .+.                       ....+.|.+.++..+
T Consensus         5 ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (112)
T d1kgce1           5 SPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQE   83 (112)
T ss_dssp             ECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGG
T ss_pred             CCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcC
Confidence            355667789999999998543 2446899873  11   110                       123467888889999


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |+|.|.|.+
T Consensus        84 Dsa~YyCa~   92 (112)
T d1kgce1          84 DSAVYLCAS   92 (112)
T ss_dssp             GCEEEEEEE
T ss_pred             CCEEEEEee
Confidence            999999986

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.84  E-value=2.8e-05  Score=46.53  Aligned_cols=68  Identities=24%  Similarity=0.393  Sum_probs=45.2

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eee---C---------CCCcEEe----eCCeEEECCCCCCCCeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAI---L---------PNGQTIF----TGSTLQIPRITKEDRGA  140 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~---~---------~~~~~~~----~~~~l~i~~~~~~~~g~  140 (232)
                      +..+.+.+|+++.|.|...+..  ...+.||+..  ..+   .         ...++..    ....|.|.+++.+|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            3457788999999999875432  3459999742  110   0         0111111    12479999999999999


Q ss_pred             EEEEeEeC
Q psy15206        141 YYCVAQNG  148 (232)
Q Consensus       141 y~C~~~~~  148 (232)
                      |.|.....
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99987654

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.83  E-value=3.2e-05  Score=46.45  Aligned_cols=63  Identities=10%  Similarity=0.221  Sum_probs=44.1

Q ss_pred             eccceeeeeccCeEEEEEEeecCC------CCeEEEeeC--CEE---e------------------cCCCeEEEEEeccc
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYP------HPILYWAKD--GEI---V------------------VNDEYHSISNFGTS  219 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p------~~~~~W~~~--g~~---~------------------~~~~~~~~~~~~~~  219 (232)
                      ..|..+.+..|++++|.|...+.-      ...+.|+|.  |..   +                  .++..+.|.+.++.
T Consensus         6 Q~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~   85 (113)
T d1q9ra1           6 QSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQ   85 (113)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             ccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccc
Confidence            346666788999999999864321      124899974  211   1                  02345788888999


Q ss_pred             cCCceEEEEecC
Q psy15206        220 EGTTGSLQCKVP  231 (232)
Q Consensus       220 ~~d~g~Y~C~~~  231 (232)
                      .+|+|.|.|.+.
T Consensus        86 ~~Dsa~YyCA~~   97 (113)
T d1q9ra1          86 AEDLAVYYCKQS   97 (113)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cCCCeEEEeccc
Confidence            999999999764

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2e-05  Score=48.03  Aligned_cols=60  Identities=10%  Similarity=0.185  Sum_probs=40.6

Q ss_pred             cceeeeeccCeEEEEEEeec----CC---CCeEEEeeCCEEe-------------------------c---CCCeEEEEE
Q psy15206        171 STRIGQALHHDMDLDCHIEA----YP---HPILYWAKDGEIV-------------------------V---NDEYHSISN  215 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~----~p---~~~~~W~~~g~~~-------------------------~---~~~~~~~~~  215 (232)
                      +..+.+.+|++|.|.|....    ..   ...+.|++.+..-                         .   ....+.|.+
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            44567889999999998631    11   1247898763211                         0   112457788


Q ss_pred             eccccCCceEEEEec
Q psy15206        216 FGTSEGTTGSLQCKV  230 (232)
Q Consensus       216 ~~~~~~d~g~Y~C~~  230 (232)
                      .++..+|+|.|.|++
T Consensus        88 ~~v~~~DsG~Y~C~v  102 (121)
T d2g5ra1          88 RDARMSDAGRYFFRM  102 (121)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             CCCChHHCEEEEEEE
Confidence            888899999999987

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.83  E-value=1.7e-05  Score=47.60  Aligned_cols=61  Identities=11%  Similarity=0.268  Sum_probs=44.1

Q ss_pred             ccceeeeeccCeEEEEEEeecCC---CCeEEEeeC--CEE---ec------------------CCCeEEEEEeccccCCc
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYP---HPILYWAKD--GEI---VV------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p---~~~~~W~~~--g~~---~~------------------~~~~~~~~~~~~~~~d~  223 (232)
                      +|..+.+..|++++|.|...+..   ...+.|+|.  |..   +.                  ....+.|.+.++..+|+
T Consensus         6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   85 (112)
T d1lgva1           6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDE   85 (112)
T ss_dssp             CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccC
Confidence            35667788999999999876542   234899973  111   10                  23467888889999999


Q ss_pred             eEEEEec
Q psy15206        224 GSLQCKV  230 (232)
Q Consensus       224 g~Y~C~~  230 (232)
                      |.|.|.+
T Consensus        86 a~YyCa~   92 (112)
T d1lgva1          86 ADYYCSS   92 (112)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEee
Confidence            9999975

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.82  E-value=6e-05  Score=45.36  Aligned_cols=67  Identities=22%  Similarity=0.543  Sum_probs=44.9

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee------CCC------CcEEe------eCCeEEECCCCCCCCeE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI------LPN------GQTIF------TGSTLQIPRITKEDRGA  140 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~------~~~------~~~~~------~~~~l~i~~~~~~~~g~  140 (232)
                      |....+.+|+++.|.|...+. ...+.||+..  ..+      ...      .+...      ....|.|.++..+|+|.
T Consensus         7 P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   85 (115)
T d1ogad1           7 PQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGL   85 (115)
T ss_dssp             CSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceee
Confidence            556778899999999997643 3469999842  111      000      01111      12379999999999999


Q ss_pred             EEEEeEeC
Q psy15206        141 YYCVAQNG  148 (232)
Q Consensus       141 y~C~~~~~  148 (232)
                      |.|.....
T Consensus        86 YyCa~~~~   93 (115)
T d1ogad1          86 YLCAGAGS   93 (115)
T ss_dssp             EEEEEECT
T ss_pred             EcccccCC
Confidence            99987643

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.82  E-value=1.3e-05  Score=49.26  Aligned_cols=44  Identities=23%  Similarity=0.329  Sum_probs=31.3

Q ss_pred             eccEEEec-cceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        163 FAPIVTVQ-STRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       163 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      .+|.+.+. |.......++.++|.|.+.|+.+.  .|.|++||..+.
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~   49 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVH   49 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEcc
Confidence            46666553 333344567889999999987544  599999998764

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=5.1e-05  Score=45.23  Aligned_cols=56  Identities=13%  Similarity=0.271  Sum_probs=36.5

Q ss_pred             eeccCeEEEEEEeec-CCCC--eEEEeeCCEEecC---------CCeE----EEEEeccccCCceEEEEecC
Q psy15206        176 QALHHDMDLDCHIEA-YPHP--ILYWAKDGEIVVN---------DEYH----SISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       176 ~~~g~~~~l~C~~~~-~p~~--~~~W~~~g~~~~~---------~~~~----~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.+|+.++|+|.+.+ +|.+  .+.|++++..+..         ...+    .+........|...|+|+|.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~   84 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAK   84 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEE
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEE
Confidence            568999999999865 6754  5899999876541         1112    23333333344448999985

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.82  E-value=4.6e-05  Score=45.67  Aligned_cols=67  Identities=27%  Similarity=0.436  Sum_probs=44.8

Q ss_pred             CCceEeecCCcEEEEeeeccCC-CCeEEEEeCC--eeeC------C----C--CcEEee----CCeEEECCCCCCCCeEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP-IPTISWRREN--NAIL------P----N--GQTIFT----GSTLQIPRITKEDRGAY  141 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~-~~~~~W~~~~--~~~~------~----~--~~~~~~----~~~l~i~~~~~~~~g~y  141 (232)
                      |..+.+.+|++++|.|...+.. ...+.||+..  +.+.      .    .  .++...    ...|.|.++..+|+|.|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y   84 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY   84 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE
Confidence            4557788999999999876544 3459999842  2110      0    0  011111    13699999999999999


Q ss_pred             EEEeEe
Q psy15206        142 YCVAQN  147 (232)
Q Consensus       142 ~C~~~~  147 (232)
                      .|.+..
T Consensus        85 yCa~~~   90 (112)
T d1kgcd1          85 YCILPL   90 (112)
T ss_dssp             EEECCC
T ss_pred             eeeEec
Confidence            998754

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.81  E-value=6.2e-05  Score=43.59  Aligned_cols=64  Identities=19%  Similarity=0.280  Sum_probs=43.7

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC--cEEe---eCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNG--QTIF---TGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~--~~~~---~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      ..+..|.+++|.|... .....+.++++|.......  ....   ....+.|.+++..|.|.|.|.....
T Consensus        11 ~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          11 PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            4677899999999975 3445688888775321000  0011   1235899999999999999987654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.81  E-value=2.7e-05  Score=46.66  Aligned_cols=60  Identities=13%  Similarity=0.336  Sum_probs=43.3

Q ss_pred             cceeeeeccCeEEEEEEeecCC--CCeEEEeeC--CE---Eec------------------CCCeEEEEEeccccCCceE
Q psy15206        171 STRIGQALHHDMDLDCHIEAYP--HPILYWAKD--GE---IVV------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~--g~---~~~------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      |..+.+..|++++|.|...+..  ...+.|+|.  |.   .+.                  ++..+.|.+.++..+|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            4456788999999999875543  235999964  11   110                  2345788899999999999


Q ss_pred             EEEec
Q psy15206        226 LQCKV  230 (232)
Q Consensus       226 Y~C~~  230 (232)
                      |.|.+
T Consensus        87 YyCA~   91 (111)
T d1rzfl1          87 YYCGT   91 (111)
T ss_dssp             EEEEE
T ss_pred             eEEee
Confidence            99975

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.81  E-value=2e-05  Score=47.73  Aligned_cols=61  Identities=10%  Similarity=0.258  Sum_probs=44.4

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--C---EEec------------------CCCeEEEEEeccccCCceEE
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--G---EIVV------------------NDEYHSISNFGTSEGTTGSL  226 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g---~~~~------------------~~~~~~~~~~~~~~~d~g~Y  226 (232)
                      .|..+.+..|++++|.|...+.-...+.|+|.  |   ..+.                  ....+.|.+.++..+|+|.|
T Consensus         7 ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavY   86 (119)
T d1f3rb2           7 SPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATY   86 (119)
T ss_dssp             ETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEE
T ss_pred             cCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEE
Confidence            35566778899999999876554456999974  1   1111                  22346788889999999999


Q ss_pred             EEec
Q psy15206        227 QCKV  230 (232)
Q Consensus       227 ~C~~  230 (232)
                      .|.+
T Consensus        87 yCa~   90 (119)
T d1f3rb2          87 FCYQ   90 (119)
T ss_dssp             EEEE
T ss_pred             Eeec
Confidence            9974

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.81  E-value=3.8e-05  Score=46.10  Aligned_cols=67  Identities=21%  Similarity=0.372  Sum_probs=44.0

Q ss_pred             CCCceEeecCCcEEEEeeeccC-----CCCeEEEEeCC--eee------------CCCCcEEee----CCeEEECCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH-----PIPTISWRREN--NAI------------LPNGQTIFT----GSTLQIPRITKE  136 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~-----~~~~~~W~~~~--~~~------------~~~~~~~~~----~~~l~i~~~~~~  136 (232)
                      .|....+.+|+++.|.|...+.     ....+.||+..  ..+            ....++...    ...|.|.++..+
T Consensus         8 ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~   87 (113)
T d1n4xl_           8 TPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAE   87 (113)
T ss_dssp             ECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGG
T ss_pred             cCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcc
Confidence            3555678899999999987542     12458999742  111            001122111    237999999999


Q ss_pred             CCeEEEEEeE
Q psy15206        137 DRGAYYCVAQ  146 (232)
Q Consensus       137 ~~g~y~C~~~  146 (232)
                      |++.|.|...
T Consensus        88 DsavYyCa~~   97 (113)
T d1n4xl_          88 DLGIYYCFQG   97 (113)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCEEEEEEEC
Confidence            9999999644

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.81  E-value=3e-05  Score=46.25  Aligned_cols=65  Identities=18%  Similarity=0.360  Sum_probs=43.2

Q ss_pred             ceEeecCCcEEEEeeeccCCC---CeEEEEeC--CeeeC------------CCCcEEe----eCCeEEECCCCCCCCeEE
Q psy15206         83 LSVAKEGQSVQLECHAEGHPI---PTISWRRE--NNAIL------------PNGQTIF----TGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~---~~~~W~~~--~~~~~------------~~~~~~~----~~~~l~i~~~~~~~~g~y  141 (232)
                      .+.+.+|++++|.|...+...   ..+.||+.  |+.+.            ...++..    ....|.|.++..+|.|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            466779999999999864322   23889873  22210            0112211    124799999999999999


Q ss_pred             EEEeEe
Q psy15206        142 YCVAQN  147 (232)
Q Consensus       142 ~C~~~~  147 (232)
                      .|....
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            998654

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.80  E-value=7e-05  Score=44.99  Aligned_cols=67  Identities=22%  Similarity=0.408  Sum_probs=45.5

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee------CC---------CCcEEe-----eCCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI------LP---------NGQTIF-----TGSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~------~~---------~~~~~~-----~~~~l~i~~~~~~~  137 (232)
                      .|....+.+|++++|.|... .....+.||+...  .+      ..         ...+..     ....|.|.++..+|
T Consensus         5 sP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (114)
T d1ogae1           5 SPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNP   83 (114)
T ss_dssp             SCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCC
T ss_pred             cCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCC
Confidence            46667888999999999974 3445799997421  11      00         001111     12369999999999


Q ss_pred             CeEEEEEeEe
Q psy15206        138 RGAYYCVAQN  147 (232)
Q Consensus       138 ~g~y~C~~~~  147 (232)
                      ++.|.|....
T Consensus        84 Sa~YyCa~~~   93 (114)
T d1ogae1          84 TAFYLCASSS   93 (114)
T ss_dssp             CEEEEEEEES
T ss_pred             ceeEEEeecc
Confidence            9999997664

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.79  E-value=2.4e-05  Score=46.78  Aligned_cols=69  Identities=17%  Similarity=0.314  Sum_probs=46.7

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee------CC------CCcEEe------eCCeEEECCCCCCCCe
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI------LP------NGQTIF------TGSTLQIPRITKEDRG  139 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~------~~------~~~~~~------~~~~l~i~~~~~~~~g  139 (232)
                      .+..+.+.+|+++.|.|.........+.||+..  +.+      ..      ..++..      ....|.|.++..+|+|
T Consensus         6 ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa   85 (110)
T d1ac6a_           6 TEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSA   85 (110)
T ss_dssp             CCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCE
T ss_pred             CCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCc
Confidence            456678889999999998765445569999842  211      00      011111      1236899999999999


Q ss_pred             EEEEEeEeC
Q psy15206        140 AYYCVAQNG  148 (232)
Q Consensus       140 ~y~C~~~~~  148 (232)
                      .|.|.+...
T Consensus        86 ~YyCA~~~~   94 (110)
T d1ac6a_          86 VYYCALSGG   94 (110)
T ss_dssp             EEEEEEEET
T ss_pred             ccceeecCC
Confidence            999987653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.2e-05  Score=43.98  Aligned_cols=63  Identities=27%  Similarity=0.411  Sum_probs=44.2

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeC---CCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAIL---PNGQTIFTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~---~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      ..+..|++++|.|... .+...+.++++|....   ...........+.|.+++..|+|.|.|....
T Consensus        13 ~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          13 SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            4567899999999974 3445688888875421   0111111235799999999999999999764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.79  E-value=1.3e-05  Score=47.80  Aligned_cols=61  Identities=11%  Similarity=0.348  Sum_probs=42.4

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---ec------------------CCCeEEEEEeccccCCceEE
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---VV------------------NDEYHSISNFGTSEGTTGSL  226 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~~------------------~~~~~~~~~~~~~~~d~g~Y  226 (232)
                      +|..+.+..|++++|.|.........+.|+|.  |..   +.                  ....+.+.+.++..+|+|.|
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Y   84 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAY   84 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEE
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceE
Confidence            35566778899999999875443345889873  211   11                  12346777778888999999


Q ss_pred             EEec
Q psy15206        227 QCKV  230 (232)
Q Consensus       227 ~C~~  230 (232)
                      .|.+
T Consensus        85 yCA~   88 (108)
T d1nfde1          85 YCLS   88 (108)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9975

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.79  E-value=4.2e-05  Score=45.81  Aligned_cols=62  Identities=11%  Similarity=0.246  Sum_probs=43.5

Q ss_pred             eccceeeeeccCeEEEEEEeecCC-----CCeEEEeeC--CEE---ec------------------CCCeEEEEEecccc
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYP-----HPILYWAKD--GEI---VV------------------NDEYHSISNFGTSE  220 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p-----~~~~~W~~~--g~~---~~------------------~~~~~~~~~~~~~~  220 (232)
                      ..|..+.+..|++++|.|...+..     ...+.|++.  |..   +.                  ....+.|.+.++..
T Consensus         6 QsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~   85 (112)
T d1ncwl1           6 QSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEA   85 (112)
T ss_dssp             EECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcccc
Confidence            346667788999999999864432     234889874  211   10                  23457888889999


Q ss_pred             CCceEEEEec
Q psy15206        221 GTTGSLQCKV  230 (232)
Q Consensus       221 ~d~g~Y~C~~  230 (232)
                      +|+|.|.|..
T Consensus        86 eDsAvYYC~~   95 (112)
T d1ncwl1          86 EDLGVYYCWQ   95 (112)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcCEeEEEEc
Confidence            9999999954

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.79  E-value=5.1e-05  Score=45.47  Aligned_cols=60  Identities=15%  Similarity=0.249  Sum_probs=42.5

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEEe-------------------------cCCCeEEEEEeccccCC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEIV-------------------------VNDEYHSISNFGTSEGT  222 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~~-------------------------~~~~~~~~~~~~~~~~d  222 (232)
                      .|....+..|++++|.|..... ...+.|+|.  |..+                         .....+.|.+.++..+|
T Consensus         5 ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (112)
T d2bnub1           5 TPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQ   83 (112)
T ss_dssp             ECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGG
T ss_pred             CCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHH
Confidence            4555667889999999986433 456999973  2111                         01234678888888899


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      +|.|.|.+
T Consensus        84 savYyCA~   91 (112)
T d2bnub1          84 TSVYFCAS   91 (112)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEee
Confidence            99999975

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.79  E-value=6.6e-05  Score=45.03  Aligned_cols=63  Identities=19%  Similarity=0.273  Sum_probs=43.3

Q ss_pred             EeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEEec-------------------------CCCeEEEEEecccc
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEIVV-------------------------NDEYHSISNFGTSE  220 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~~~-------------------------~~~~~~~~~~~~~~  220 (232)
                      ...|..+.+.+|++++|.|.... -...+.|+|.  |..+.                         .+..+.+.+.++..
T Consensus         4 ~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   82 (113)
T d1j8he1           4 TQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST   82 (113)
T ss_dssp             EESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc
Confidence            34456667789999999998533 2346889873  21110                         12346777888889


Q ss_pred             CCceEEEEecC
Q psy15206        221 GTTGSLQCKVP  231 (232)
Q Consensus       221 ~d~g~Y~C~~~  231 (232)
                      +|+|.|.|.+.
T Consensus        83 ~Dsa~YyCa~~   93 (113)
T d1j8he1          83 NQTSMYLCASS   93 (113)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCcccEEeeEc
Confidence            99999999763

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00015  Score=41.94  Aligned_cols=61  Identities=20%  Similarity=0.428  Sum_probs=41.2

Q ss_pred             cCCcEEEEeeecc-CCCCeEEEEeCCeeeCCCCcEEe---------eCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         88 EGQSVQLECHAEG-HPIPTISWRRENNAILPNGQTIF---------TGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        88 ~g~~~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .++.+.|.|.+.| +|.+.+.|++++..+........         ..+.|.+.   ..+...|.|.+.+..-.
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLR   85 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCC
Confidence            4677899999988 68889999999887643322111         11244443   34567899999986543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.78  E-value=7.1e-05  Score=44.86  Aligned_cols=62  Identities=11%  Similarity=0.168  Sum_probs=44.3

Q ss_pred             eccceeeeeccCeEEEEEEeecCC-----CCeEEEeeC--CEE---e------------------cCCCeEEEEEecccc
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYP-----HPILYWAKD--GEI---V------------------VNDEYHSISNFGTSE  220 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p-----~~~~~W~~~--g~~---~------------------~~~~~~~~~~~~~~~  220 (232)
                      ..|..+.+..|++++|.|...+..     ...+.|+|.  |..   +                  .....+.|.+.++..
T Consensus         7 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~   86 (113)
T d1n4xl_           7 QTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA   86 (113)
T ss_dssp             EECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCG
T ss_pred             CcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCc
Confidence            346667788999999999875432     235899874  211   1                  023457889999999


Q ss_pred             CCceEEEEec
Q psy15206        221 GTTGSLQCKV  230 (232)
Q Consensus       221 ~d~g~Y~C~~  230 (232)
                      +|+|.|.|..
T Consensus        87 ~DsavYyCa~   96 (113)
T d1n4xl_          87 EDLGIYYCFQ   96 (113)
T ss_dssp             GGCEEEEEEE
T ss_pred             ccCEEEEEEE
Confidence            9999999964

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=1.2e-05  Score=48.58  Aligned_cols=61  Identities=10%  Similarity=0.140  Sum_probs=41.4

Q ss_pred             cceeeeeccCeEEEEEEeec---CCC---CeEEEeeCC----EEe-c---------------------CCCeEEEEEecc
Q psy15206        171 STRIGQALHHDMDLDCHIEA---YPH---PILYWAKDG----EIV-V---------------------NDEYHSISNFGT  218 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~---~p~---~~~~W~~~g----~~~-~---------------------~~~~~~~~~~~~  218 (232)
                      |..+.+.+|+.|.|.|....   .+.   ..+.|++.+    ..+ .                     ....+.|.+.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            55677889999999998642   111   236677642    111 0                     123457888899


Q ss_pred             ccCCceEEEEecC
Q psy15206        219 SEGTTGSLQCKVP  231 (232)
Q Consensus       219 ~~~d~g~Y~C~~~  231 (232)
                      ..+|+|.|.|++.
T Consensus        87 ~~~DsG~Y~C~v~   99 (118)
T d1qfoa_          87 KPEDSGTYNFRFE   99 (118)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ChhHCEEEEEEEE
Confidence            9999999999874

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.76  E-value=3.2e-05  Score=46.33  Aligned_cols=67  Identities=19%  Similarity=0.408  Sum_probs=44.8

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eee------------CCCCcEEee------CCeEEECCCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAI------------LPNGQTIFT------GSTLQIPRITKEDR  138 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~------------~~~~~~~~~------~~~l~i~~~~~~~~  138 (232)
                      |..+.+.+|+++.|.|...+..  ...+.|++..  +.+            ....++...      ...|.|.++..+|+
T Consensus         7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   86 (111)
T d1cd0a_           7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence            4567788999999999876543  2358999842  111            001111111      23799999999999


Q ss_pred             eEEEEEeEe
Q psy15206        139 GAYYCVAQN  147 (232)
Q Consensus       139 g~y~C~~~~  147 (232)
                      +.|.|....
T Consensus        87 a~YyCA~~~   95 (111)
T d1cd0a_          87 ADYYCQSYD   95 (111)
T ss_dssp             EEEEEEEEE
T ss_pred             cEEEEeecc
Confidence            999998654

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=1.7e-05  Score=46.62  Aligned_cols=55  Identities=16%  Similarity=0.289  Sum_probs=33.5

Q ss_pred             eccCeEEEEEEeecCCCC--eEEEeeCCEEec--------CCCeEEEEE-ec--cccCCceEEEEecC
Q psy15206        177 ALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV--------NDEYHSISN-FG--TSEGTTGSLQCKVP  231 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~--------~~~~~~~~~-~~--~~~~d~g~Y~C~~~  231 (232)
                      ..++.++|.|.+.|+.+.  .|.|.++|....        .++.|.... ..  ....+.|.|+|+|.
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w~~~~ytC~V~   85 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWPSASVTCLVA   85 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTTSCCEEEEE
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhcCCCeEEEEEE
Confidence            457899999999986443  699998874321        223332211 11  12224678999874

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=3.7e-05  Score=45.41  Aligned_cols=30  Identities=20%  Similarity=0.545  Sum_probs=23.2

Q ss_pred             eccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        177 ALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      ..+..++|.|.+.|+.+.  .|.|++||..+.
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~   50 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQVMD   50 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEECC
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEEcc
Confidence            345678999999985433  599999998765

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.71  E-value=4e-05  Score=45.26  Aligned_cols=66  Identities=24%  Similarity=0.461  Sum_probs=43.8

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCee--e---C---------CCCcEEe----eCCeEEECCCCCCCCeEE
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA--I---L---------PNGQTIF----TGSTLQIPRITKEDRGAY  141 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~--~---~---------~~~~~~~----~~~~l~i~~~~~~~~g~y  141 (232)
                      .|..+.+.+|+++.|.|.... ....+.||+....  +   .         ...++..    ....|.|.++..+|+|.|
T Consensus         6 sP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (104)
T d1yqvl1           6 SPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATY   84 (104)
T ss_dssp             ESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             cCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeE
Confidence            356677889999999998643 3345889974311  0   0         0111111    123799999999999999


Q ss_pred             EEEeE
Q psy15206        142 YCVAQ  146 (232)
Q Consensus       142 ~C~~~  146 (232)
                      .|...
T Consensus        85 yCa~~   89 (104)
T d1yqvl1          85 YCQQW   89 (104)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99753

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.71  E-value=0.00017  Score=43.84  Aligned_cols=59  Identities=15%  Similarity=0.450  Sum_probs=40.0

Q ss_pred             ceeeeeccCeEEEEEEeecCC--CCeEEEeeC--CEE---ec-------------------------CCCeEEEEEeccc
Q psy15206        172 TRIGQALHHDMDLDCHIEAYP--HPILYWAKD--GEI---VV-------------------------NDEYHSISNFGTS  219 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~--g~~---~~-------------------------~~~~~~~~~~~~~  219 (232)
                      ..+....|++++|.|.+.|..  ...+.|+|.  |..   +.                         ....+.|.+.++.
T Consensus         9 ~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~   88 (123)
T d1hxmb1           9 ISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVE   88 (123)
T ss_dssp             SEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCC
T ss_pred             CeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccc
Confidence            345667899999999988753  335889873  110   10                         1123456667778


Q ss_pred             cCCceEEEEec
Q psy15206        220 EGTTGSLQCKV  230 (232)
Q Consensus       220 ~~d~g~Y~C~~  230 (232)
                      .+|+|.|.|.+
T Consensus        89 ~~Dsa~YyCA~   99 (123)
T d1hxmb1          89 KQDIATYYCAL   99 (123)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccCcEEEEee
Confidence            89999999975

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.70  E-value=2e-05  Score=46.84  Aligned_cols=68  Identities=15%  Similarity=0.230  Sum_probs=40.0

Q ss_pred             ccEEEecc-ceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec----------CCCeE-EEEEeccccCC-ceEEEE
Q psy15206        164 APIVTVQS-TRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV----------NDEYH-SISNFGTSEGT-TGSLQC  228 (232)
Q Consensus       164 ~p~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~----------~~~~~-~~~~~~~~~~d-~g~Y~C  228 (232)
                      +|.+.+.+ .......+..++|.|.+.|+.+.  .|.|++||..+.          .++.| ..+.......+ ...|+|
T Consensus         8 ~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~~~ytC   87 (107)
T d1hxmb2           8 SPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLDKEHRC   87 (107)
T ss_dssp             SCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGGSCEEE
T ss_pred             CCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCCCeEEE
Confidence            45544432 33334457789999999987554  599999986543          22222 22222333333 337999


Q ss_pred             ecC
Q psy15206        229 KVP  231 (232)
Q Consensus       229 ~~~  231 (232)
                      .|.
T Consensus        88 ~V~   90 (107)
T d1hxmb2          88 IVR   90 (107)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            973

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00011  Score=44.38  Aligned_cols=61  Identities=11%  Similarity=0.134  Sum_probs=42.7

Q ss_pred             cceeeeeccCeEEEEEEeecCCCC---eEEEeeC--CEE---ec---------------------CCCeEEEEEeccccC
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHP---ILYWAKD--GEI---VV---------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~---~~~W~~~--g~~---~~---------------------~~~~~~~~~~~~~~~  221 (232)
                      |..+.+..|+.++|.|........   .+.|+|.  |..   +.                     ++..+.|.+.+...+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            445566789999999997443222   4889984  211   10                     234578889999999


Q ss_pred             CceEEEEecC
Q psy15206        222 TTGSLQCKVP  231 (232)
Q Consensus       222 d~g~Y~C~~~  231 (232)
                      |+|.|.|.+.
T Consensus        86 Dsa~YyCa~~   95 (118)
T d1i8lc_          86 DTGLYICKVE   95 (118)
T ss_dssp             GCEEEEEEEE
T ss_pred             CCEEEEEeEe
Confidence            9999999764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.69  E-value=2.6e-05  Score=46.44  Aligned_cols=68  Identities=26%  Similarity=0.504  Sum_probs=45.6

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeC--Ceee---C-C--------CCcEEe----eCCeEEECCCCCCCCeEEE
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAI---L-P--------NGQTIF----TGSTLQIPRITKEDRGAYY  142 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~---~-~--------~~~~~~----~~~~l~i~~~~~~~~g~y~  142 (232)
                      |....+.+|++++|.|.........+.||+.  |..+   . .        ..++..    ....|.|.++..+|+|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            4456778999999999875544456889874  2211   0 0        011111    1237999999999999999


Q ss_pred             EEeEeC
Q psy15206        143 CVAQNG  148 (232)
Q Consensus       143 C~~~~~  148 (232)
                      |.+...
T Consensus        86 CA~~~~   91 (108)
T d1nfde1          86 CLSSYG   91 (108)
T ss_dssp             EEEEET
T ss_pred             EEeecC
Confidence            987643

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.69  E-value=4.4e-05  Score=44.47  Aligned_cols=53  Identities=19%  Similarity=0.255  Sum_probs=33.6

Q ss_pred             cCeEEEEEEeecCCCC--eEEEeeCCEEec---------------CCCeEEE-EEeccccCCceEEEEecC
Q psy15206        179 HHDMDLDCHIEAYPHP--ILYWAKDGEIVV---------------NDEYHSI-SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       179 g~~~~l~C~~~~~p~~--~~~W~~~g~~~~---------------~~~~~~~-~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...++|.|.+.|+.+.  .|.|++||..+.               .++.|.+ +.......+...|+|.|.
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~   84 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVK   84 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEE
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEE
Confidence            3468999999998666  499999874321               1223322 223334455568999873

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.68  E-value=2.1e-05  Score=46.53  Aligned_cols=68  Identities=16%  Similarity=0.333  Sum_probs=40.1

Q ss_pred             ccEEEeccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEecC----------CCeEEEEE-ecccc---CCceEEE
Q psy15206        164 APIVTVQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVVN----------DEYHSISN-FGTSE---GTTGSLQ  227 (232)
Q Consensus       164 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~~----------~~~~~~~~-~~~~~---~d~g~Y~  227 (232)
                      +|.+.+.+.......++.+.|.|.+.|+.+.  .|.|++||..+..          +..|.... ..+..   .+...|+
T Consensus         5 ~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~yt   84 (104)
T d1nfde2           5 SPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVS   84 (104)
T ss_dssp             CCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEE
T ss_pred             CCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEE
Confidence            4555543322222246778999999986443  6999999987652          22332222 22221   3445799


Q ss_pred             EecC
Q psy15206        228 CKVP  231 (232)
Q Consensus       228 C~~~  231 (232)
                      |+|.
T Consensus        85 C~V~   88 (104)
T d1nfde2          85 CQVT   88 (104)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9974

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00017  Score=41.87  Aligned_cols=64  Identities=17%  Similarity=0.283  Sum_probs=41.2

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcE------EeeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQT------IFTGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      ..+..|++++|.|... .....+.++|+|.........      ......+.|.+++..|.|.|+|.....
T Consensus        13 ~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          13 PVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             SEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             CccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            4577899999999874 344567788877653221110      011135899999999999999987654

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.67  E-value=3.4e-05  Score=46.51  Aligned_cols=68  Identities=18%  Similarity=0.230  Sum_probs=44.0

Q ss_pred             CCceEeecCCcEEEEeeecc---CC---CCeEEEEeCCeee---------------CCCCcEEe------eCCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEG---HP---IPTISWRRENNAI---------------LPNGQTIF------TGSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~---~~---~~~~~W~~~~~~~---------------~~~~~~~~------~~~~l~i~~~  133 (232)
                      |..+.+.+|+.+.|.|....   .+   ...+.|++.....               ....+...      .+.+|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            45567889999999998742   11   1235677643211               00112222      1347999999


Q ss_pred             CCCCCeEEEEEeEeC
Q psy15206        134 TKEDRGAYYCVAQNG  148 (232)
Q Consensus       134 ~~~~~g~y~C~~~~~  148 (232)
                      +.+|+|.|.|.+...
T Consensus        87 ~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          87 KPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CGGGCEEEEEEEECC
T ss_pred             ChhHCEEEEEEEEeC
Confidence            999999999999754

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.66  E-value=1.2e-05  Score=46.86  Aligned_cols=66  Identities=21%  Similarity=0.523  Sum_probs=43.7

Q ss_pred             eEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeCC------------CCcEEe------eCCeEEECCCCCCCCeEEEE
Q psy15206         84 SVAKEGQSVQLECHAEGHPIPTISWRRE--NNAILP------------NGQTIF------TGSTLQIPRITKEDRGAYYC  143 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~~------------~~~~~~------~~~~l~i~~~~~~~~g~y~C  143 (232)
                      +++.+|++++|.|.... ....+.||+.  ++.+..            ..++..      ....|.|.+++.+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            45678999999998754 3446999973  222110            111111      11369999999999999999


Q ss_pred             EeEeCCC
Q psy15206        144 VAQNGIG  150 (232)
Q Consensus       144 ~~~~~~~  150 (232)
                      .+....+
T Consensus        82 A~~~~~g   88 (96)
T d1ymmd1          82 ATDTTSG   88 (96)
T ss_dssp             EEEETTS
T ss_pred             eEecCCC
Confidence            8876544

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.66  E-value=0.00014  Score=43.48  Aligned_cols=66  Identities=32%  Similarity=0.551  Sum_probs=44.2

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeCC--eee----------------CCCCcEEee-----CCeEEECCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRREN--NAI----------------LPNGQTIFT-----GSTLQIPRITKED  137 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~--~~~----------------~~~~~~~~~-----~~~l~i~~~~~~~  137 (232)
                      |....+.+|++++|.|.... ....+.||+..  +.+                ....++...     ...|.|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (112)
T d1kgce1           6 PRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQED   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCC
Confidence            55567789999999998543 34568998832  110                001111111     2369999999999


Q ss_pred             CeEEEEEeEe
Q psy15206        138 RGAYYCVAQN  147 (232)
Q Consensus       138 ~g~y~C~~~~  147 (232)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (112)
T d1kgce1          85 SAVYLCASSL   94 (112)
T ss_dssp             CEEEEEEEES
T ss_pred             CEEEEEeeeC
Confidence            9999998764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.66  E-value=8.3e-05  Score=45.04  Aligned_cols=60  Identities=10%  Similarity=0.266  Sum_probs=41.2

Q ss_pred             cceeeeeccCeEEEEEEeecCC--CCeEEEeeC--C---EEe------------------------cCCCeEEEEEeccc
Q psy15206        171 STRIGQALHHDMDLDCHIEAYP--HPILYWAKD--G---EIV------------------------VNDEYHSISNFGTS  219 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p--~~~~~W~~~--g---~~~------------------------~~~~~~~~~~~~~~  219 (232)
                      +..+....|++++|.|...+..  ...+.|+|.  |   ..+                        .....+.|.+.++.
T Consensus         8 ~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1           8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (120)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence            3455667899999999875542  335889873  1   111                        01234678888888


Q ss_pred             cCCceEEEEec
Q psy15206        220 EGTTGSLQCKV  230 (232)
Q Consensus       220 ~~d~g~Y~C~~  230 (232)
                      .+|+|.|.|..
T Consensus        88 ~~Dsa~YyCA~   98 (120)
T d1ypzf1          88 EEDEAIYYCSY   98 (120)
T ss_dssp             GGGCSEEEEEE
T ss_pred             cccceeEEEEE
Confidence            89999999975

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.64  E-value=7.4e-05  Score=44.80  Aligned_cols=62  Identities=11%  Similarity=0.103  Sum_probs=43.6

Q ss_pred             eccceeeeeccCeEEEEEEeecCCCCeEEEeeCC--EE---e----------------------cCCCeEEEEEeccccC
Q psy15206        169 VQSTRIGQALHHDMDLDCHIEAYPHPILYWAKDG--EI---V----------------------VNDEYHSISNFGTSEG  221 (232)
Q Consensus       169 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~g--~~---~----------------------~~~~~~~~~~~~~~~~  221 (232)
                      ..|..+.+.+|++++|.|..... ...+.|+|..  ..   +                      ..+..+.|.+.++..+
T Consensus         6 Q~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   84 (113)
T d1nfdb1           6 QSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELE   84 (113)
T ss_dssp             EECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGG
T ss_pred             EcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcC
Confidence            34666677899999999986443 3469999741  11   1                      0123467888888999


Q ss_pred             CceEEEEecC
Q psy15206        222 TTGSLQCKVP  231 (232)
Q Consensus       222 d~g~Y~C~~~  231 (232)
                      |+|.|.|.++
T Consensus        85 Dsa~YyCa~~   94 (113)
T d1nfdb1          85 DSAMYFCASS   94 (113)
T ss_dssp             GCEEECEEEE
T ss_pred             CceeEEEEee
Confidence            9999999753

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=5.1e-05  Score=44.35  Aligned_cols=63  Identities=16%  Similarity=0.294  Sum_probs=39.1

Q ss_pred             ecCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc---EEeeCCeE---EECCCCCCCCeEEEEEeEeCC
Q psy15206         87 KEGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ---TIFTGSTL---QIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        87 ~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~---~~~~~~~l---~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ..|+.+.|.|.+.|. |. ..+.|.++|..+.....   ....++++   ....+..++.+.|+|.+.+..
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCC
Confidence            467889999999995 43 36999999987642111   11112221   112234455668999999864

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=3.5e-05  Score=45.32  Aligned_cols=55  Identities=18%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             eccCeEEEEEEeecCCCC--eEEEeeCCEEe--------cCCCeEEEEE-ecc--ccCCceEEEEecC
Q psy15206        177 ALHHDMDLDCHIEAYPHP--ILYWAKDGEIV--------VNDEYHSISN-FGT--SEGTTGSLQCKVP  231 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~--------~~~~~~~~~~-~~~--~~~d~g~Y~C~~~  231 (232)
                      ..++.++|.|.+.|+.+.  .|.|.+++...        ..++.|.... ..+  ...+.+.|+|+|.
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w~~~~ytC~V~   85 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVA   85 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTTSCCEEEEE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHcCCceEEEEEE
Confidence            357789999999997544  59998776331        1233333221 112  2223578999984

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=0.00013  Score=42.52  Aligned_cols=60  Identities=15%  Similarity=0.264  Sum_probs=38.6

Q ss_pred             ecCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCcEEe---eC------CeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         87 KEGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQTIF---TG------STLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        87 ~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~~~~---~~------~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ..|+.+.|.|.+.|. |. ..++|.++|..+........   .+      +.|.+   ...+...|+|.+.+..
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v---~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEF---TPTETDTYACRVKHDS   86 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEE---CCCSSCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEe---cCcCCCEEEEEEEeCC
Confidence            357889999999994 43 36999999987643221111   11      23433   3445568999999854

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.62  E-value=0.00014  Score=43.43  Aligned_cols=66  Identities=32%  Similarity=0.617  Sum_probs=44.3

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeC--Ceee----------------CCCCcEEee-----CCeEEECCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAI----------------LPNGQTIFT-----GSTLQIPRITKED  137 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~----------------~~~~~~~~~-----~~~l~i~~~~~~~  137 (232)
                      |....+.+|++++|.|...+ ....+.||+.  |..+                ....++...     ...|.|.++..+|
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~D   84 (111)
T d2esve1           6 PSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELED   84 (111)
T ss_dssp             CSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGG
T ss_pred             CCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCC
Confidence            55677889999999998543 3346889874  2111                001112211     1379999999999


Q ss_pred             CeEEEEEeEe
Q psy15206        138 RGAYYCVAQN  147 (232)
Q Consensus       138 ~g~y~C~~~~  147 (232)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (111)
T d2esve1          85 SGVYFCASSQ   94 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             CceEEEeeeC
Confidence            9999998653

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.60  E-value=4.2e-05  Score=45.85  Aligned_cols=60  Identities=15%  Similarity=0.287  Sum_probs=42.0

Q ss_pred             ccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEE---ec----------------------CCCeEEEEEeccccCC
Q psy15206        170 QSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEI---VV----------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       170 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~---~~----------------------~~~~~~~~~~~~~~~d  222 (232)
                      .|..+.+..|++++|.|..... ...+.|+|.  |..   +.                      ....+.+.+..+..+|
T Consensus         4 sP~~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   82 (112)
T d2cdeb1           4 TPRYLVIGTGKKITLECSQTMG-HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSH   82 (112)
T ss_dssp             ECSEEEEETTCCBCCEEEETTC-CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTT
T ss_pred             CCCEEEECCCCCEEEEEEEeCC-cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccc
Confidence            4556677899999999986432 346899974  111   10                      1234667777888899


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      +|.|.|.+
T Consensus        83 sa~YyCA~   90 (112)
T d2cdeb1          83 TSQYLCAS   90 (112)
T ss_dssp             CSEEEEEE
T ss_pred             cccEEEEE
Confidence            99999975

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=0.00028  Score=41.86  Aligned_cols=66  Identities=21%  Similarity=0.393  Sum_probs=43.9

Q ss_pred             ceEeecCCcEEEEeeeccC--CCCeEEEEeC--Cee---e-C---CC--------CcEEee----C--CeEEECCCCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGH--PIPTISWRRE--NNA---I-L---PN--------GQTIFT----G--STLQIPRITKED  137 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~--~~~~~~W~~~--~~~---~-~---~~--------~~~~~~----~--~~l~i~~~~~~~  137 (232)
                      ...+.+|++++|.|...+.  ....+.|++.  ++.   + .   ..        +++...    .  ..|.|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            3567799999999998653  3446889984  221   1 0   00        111111    1  258999999999


Q ss_pred             CeEEEEEeEeC
Q psy15206        138 RGAYYCVAQNG  148 (232)
Q Consensus       138 ~g~y~C~~~~~  148 (232)
                      .|.|.|.....
T Consensus        84 sa~YyCa~~~~   94 (110)
T d1u9ka_          84 SGLYRCVIYHP   94 (110)
T ss_dssp             CEEEEEEEECT
T ss_pred             CEEEEEEEeCC
Confidence            99999998654

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=0.0002  Score=39.29  Aligned_cols=59  Identities=14%  Similarity=0.255  Sum_probs=43.3

Q ss_pred             eeeeeccCeEEEEEEeec-CCCCeEEEee-CCE---Eec-------------CCCeEEEEEeccccCCceEEEEecC
Q psy15206        173 RIGQALHHDMDLDCHIEA-YPHPILYWAK-DGE---IVV-------------NDEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~-~p~~~~~W~~-~g~---~~~-------------~~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+..|+.+.|.|.+.- --.|+++|.| +|.   .+.             +-+.|.+..+....+|.|.|+|.|.
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSan   88 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTN   88 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEE
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecC
Confidence            345678999999999854 3467899987 332   222             2245777888888899999999875

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=4.5e-05  Score=45.39  Aligned_cols=43  Identities=16%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             ccEEEec-cceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEec
Q psy15206        164 APIVTVQ-STRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIVV  206 (232)
Q Consensus       164 ~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~~  206 (232)
                      +|.+.+. +.......++.++|.|.+.|+.+.  .|.|++||..+.
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~   49 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELP   49 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECC
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcC
Confidence            4555543 333344567899999999886443  699999998764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.57  E-value=0.00031  Score=42.47  Aligned_cols=68  Identities=24%  Similarity=0.399  Sum_probs=45.9

Q ss_pred             CCCceEeecCCcEEEEeeeccCC--CCeEEEEeC--Ceee---C---------CCCcEEee------CCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHP--IPTISWRRE--NNAI---L---------PNGQTIFT------GSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~---~---------~~~~~~~~------~~~l~i~~~~~~~  137 (232)
                      .+..+.+.+|++++|.|...+..  ...+.|++.  |+.+   .         ...++...      ...|.|.+++.+|
T Consensus         7 ~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~D   86 (120)
T d1hxma1           7 EHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERD   86 (120)
T ss_dssp             SCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGG
T ss_pred             cCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccC
Confidence            34556788999999999987643  346899973  2211   0         01122111      1379999999999


Q ss_pred             CeEEEEEeEe
Q psy15206        138 RGAYYCVAQN  147 (232)
Q Consensus       138 ~g~y~C~~~~  147 (232)
                      +|.|.|....
T Consensus        87 sa~YyCA~~~   96 (120)
T d1hxma1          87 EGSYYCACDT   96 (120)
T ss_dssp             CEEEEEEEEC
T ss_pred             CceeecCccc
Confidence            9999998654

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.57  E-value=0.00013  Score=43.70  Aligned_cols=67  Identities=19%  Similarity=0.404  Sum_probs=45.0

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeC---------------CCCcEEe-e----CCeEEECCCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAIL---------------PNGQTIF-T----GSTLQIPRITKEDR  138 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~---------------~~~~~~~-~----~~~l~i~~~~~~~~  138 (232)
                      |....+.+|++++|.|...+ ....+.||+.  ++.+.               ...++.. .    ...|.|.++..+|+
T Consensus         6 P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (113)
T d2ntsp1           6 PRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDS   84 (113)
T ss_dssp             CSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccc
Confidence            45567889999999998644 3356899982  32210               0111111 1    13699999999999


Q ss_pred             eEEEEEeEeC
Q psy15206        139 GAYYCVAQNG  148 (232)
Q Consensus       139 g~y~C~~~~~  148 (232)
                      +.|.|.+...
T Consensus        85 a~YyCA~~~~   94 (113)
T d2ntsp1          85 ALYLCASSLA   94 (113)
T ss_dssp             EEEEEEEESS
T ss_pred             eeeeeeeeCC
Confidence            9999987643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.56  E-value=8.3e-05  Score=44.55  Aligned_cols=67  Identities=22%  Similarity=0.391  Sum_probs=43.7

Q ss_pred             CCCceEeecCCcEEEEeeeccC------CCCeEEEEeCC--eee------------CCCCcEEe----eCCeEEECCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGH------PIPTISWRREN--NAI------------LPNGQTIF----TGSTLQIPRITK  135 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~------~~~~~~W~~~~--~~~------------~~~~~~~~----~~~~l~i~~~~~  135 (232)
                      .|..+.+.+|+++.|.|...+.      ....+.||+..  ..+            ....++..    ....|.|.++..
T Consensus         7 ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~   86 (113)
T d1q9ra1           7 SPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQA   86 (113)
T ss_dssp             ECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred             cCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccccc
Confidence            3566778899999999986532      12348999842  211            00111111    123799999999


Q ss_pred             CCCeEEEEEeE
Q psy15206        136 EDRGAYYCVAQ  146 (232)
Q Consensus       136 ~~~g~y~C~~~  146 (232)
                      +|+|.|.|...
T Consensus        87 ~Dsa~YyCA~~   97 (113)
T d1q9ra1          87 EDLAVYYCKQS   97 (113)
T ss_dssp             GGCEEEEEEEC
T ss_pred             CCCeEEEeccc
Confidence            99999999854

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00017  Score=43.55  Aligned_cols=67  Identities=15%  Similarity=0.241  Sum_probs=42.3

Q ss_pred             CCceEeecCCcEEEEeeeccCCCC---eEEEEeCCeeeCC---------------CCcE------EeeCCeEEECCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIP---TISWRRENNAILP---------------NGQT------IFTGSTLQIPRITKE  136 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~~~~~~---------------~~~~------~~~~~~l~i~~~~~~  136 (232)
                      |....+.+|+.+.|.|........   .+.|++....-..               ....      ......|.|.++..+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM   85 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence            334556678999999997543222   4889985321000               0000      001237999999999


Q ss_pred             CCeEEEEEeEe
Q psy15206        137 DRGAYYCVAQN  147 (232)
Q Consensus       137 ~~g~y~C~~~~  147 (232)
                      |.|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (118)
T d1i8lc_          86 DTGLYICKVEL   96 (118)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCEEEEEeEec
Confidence            99999998764

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=0.00015  Score=43.70  Aligned_cols=67  Identities=16%  Similarity=0.268  Sum_probs=42.5

Q ss_pred             CCceEeecCCcEEEEeeeccCCCC---eEEEEeCC--eee--C------------CCCcE---Ee--eCCeEEECCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIP---TISWRREN--NAI--L------------PNGQT---IF--TGSTLQIPRITKE  136 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~---~~~W~~~~--~~~--~------------~~~~~---~~--~~~~l~i~~~~~~  136 (232)
                      +....+.+|+++.|.|........   .+.|++..  +.+  .            .....   ..  ....|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            344556689999999997543222   37899842  211  0            00000   11  1237999999999


Q ss_pred             CCeEEEEEeEe
Q psy15206        137 DRGAYYCVAQN  147 (232)
Q Consensus       137 ~~g~y~C~~~~  147 (232)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998764

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.53  E-value=0.00082  Score=40.03  Aligned_cols=67  Identities=18%  Similarity=0.337  Sum_probs=44.7

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeC---------------CCCcEEee-----CCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAIL---------------PNGQTIFT-----GSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~---------------~~~~~~~~-----~~~l~i~~~~~~~  137 (232)
                      .|....+.+|+++.|.|... .....+.||+.  |..+.               ...+....     ...|.|.++..+|
T Consensus         6 sP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   84 (113)
T d1j8he1           6 SSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQ   84 (113)
T ss_dssp             SCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGG
T ss_pred             cCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCC
Confidence            45566788999999999863 33456889873  22110               00111111     2369999999999


Q ss_pred             CeEEEEEeEe
Q psy15206        138 RGAYYCVAQN  147 (232)
Q Consensus       138 ~g~y~C~~~~  147 (232)
                      +|.|.|.+..
T Consensus        85 sa~YyCa~~~   94 (113)
T d1j8he1          85 TSMYLCASSS   94 (113)
T ss_dssp             CEEEEEEEEC
T ss_pred             cccEEeeEcc
Confidence            9999998764

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.52  E-value=0.00011  Score=43.98  Aligned_cols=68  Identities=15%  Similarity=0.378  Sum_probs=45.2

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCe--ee------C---------CCCcEEe-----eCCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENN--AI------L---------PNGQTIF-----TGSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~--~~------~---------~~~~~~~-----~~~~l~i~~~~~~~  137 (232)
                      .|....+.+|+++.|.|.... ....+.||+...  .+      .         .......     ....|.|.++..+|
T Consensus         4 sP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D   82 (112)
T d2cdeb1           4 TPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSH   82 (112)
T ss_dssp             ECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTT
T ss_pred             CCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccccc
Confidence            355567889999999998643 345799998431  11      0         0001111     12469999999999


Q ss_pred             CeEEEEEeEeC
Q psy15206        138 RGAYYCVAQNG  148 (232)
Q Consensus       138 ~g~y~C~~~~~  148 (232)
                      +|.|.|.+...
T Consensus        83 sa~YyCA~~~~   93 (112)
T d2cdeb1          83 TSQYLCASSEN   93 (112)
T ss_dssp             CSEEEEEEECS
T ss_pred             cccEEEEEecC
Confidence            99999987654

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.51  E-value=9.5e-05  Score=44.24  Aligned_cols=63  Identities=10%  Similarity=0.149  Sum_probs=41.0

Q ss_pred             EeccceeeeeccCeEEEEEEeecCCCCeEEEeeC--CEEe---c-------------CCCe--------EEEEEeccccC
Q psy15206        168 TVQSTRIGQALHHDMDLDCHIEAYPHPILYWAKD--GEIV---V-------------NDEY--------HSISNFGTSEG  221 (232)
Q Consensus       168 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~~---~-------------~~~~--------~~~~~~~~~~~  221 (232)
                      ...|..+.+.+|++++|.|...+.-...+.|+|.  |..+   .             ...+        ..+.+.....+
T Consensus         5 ~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~   84 (112)
T d1fo0b_           5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS   84 (112)
T ss_dssp             EEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCC
T ss_pred             EeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCcc
Confidence            3446666778899999999876654557999985  2211   0             0111        23444455669


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |++.|.|.+
T Consensus        85 dsa~Y~Ca~   93 (112)
T d1fo0b_          85 QGRTLYCTC   93 (112)
T ss_dssp             SCEEEEEEE
T ss_pred             CCccEEEEE
Confidence            999999975

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.51  E-value=0.00023  Score=42.26  Aligned_cols=56  Identities=13%  Similarity=0.269  Sum_probs=38.0

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec----------------------CCCeEEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV----------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~----------------------~~~~~~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+...  .+.|+|.  |+.      +.                      ..+.+.|.+++...+|
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eD   90 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDD   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCc
Confidence            45679999999999887543  3788773  111      10                      1223456666777799


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|..
T Consensus        91 tAvYYCA~   98 (117)
T d1iqdb1          91 TAVYYCAV   98 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEeE
Confidence            99999964

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=2.6e-05  Score=46.50  Aligned_cols=64  Identities=17%  Similarity=0.316  Sum_probs=40.7

Q ss_pred             eecCCcEEEEeeeccC-CCC-eEEEEeCCeeeCCCCc--------------EEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         86 AKEGQSVQLECHAEGH-PIP-TISWRRENNAILPNGQ--------------TIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~-~~~-~~~W~~~~~~~~~~~~--------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +..++.+.|.|.+.+. |.. .+.|+++|..+.....              .....+.|.|..-.......|+|.+.+..
T Consensus        17 ~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          17 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            3457889999999884 433 6999999887543211              11112345555444444568999999854

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00051  Score=37.11  Aligned_cols=59  Identities=14%  Similarity=0.318  Sum_probs=40.0

Q ss_pred             eecCCcEEEEeeeccCCCC--eEEEEeCCeeeCCCCcEEeeCCeEEECCCCCCCCeEEEEEeEe
Q psy15206         86 AKEGQSVQLECHAEGHPIP--TISWRRENNAILPNGQTIFTGSTLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      ...|..+.|+|.......+  --.|.|+|+.+...... ...-.+.|..  .+++|.|.|.+..
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~-~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-GQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-CSEEEEEECG--GGCCEEEEEEEES
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC-CCceEEEEec--CCCCceEEEEEcC
Confidence            3457889999998664432  37899999988654321 1112345554  7789999999874

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.49  E-value=0.00041  Score=42.07  Aligned_cols=67  Identities=30%  Similarity=0.551  Sum_probs=44.7

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeCC--eee-----------------CCCCcEEee------CCeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NAI-----------------LPNGQTIFT------GSTLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~-----------------~~~~~~~~~------~~~l~i~~~  133 (232)
                      +..++..+|+++.|.|.+.|..  ...+.||+..  +.+                 ....++...      ...|.|.++
T Consensus         8 ~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l   87 (123)
T d1hxmb1           8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV   87 (123)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccc
Confidence            3446677899999999987643  3468898732  111                 001122221      125999999


Q ss_pred             CCCCCeEEEEEeEe
Q psy15206        134 TKEDRGAYYCVAQN  147 (232)
Q Consensus       134 ~~~~~g~y~C~~~~  147 (232)
                      ..+|.+.|.|....
T Consensus        88 ~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          88 EKQDIATYYCALWE  101 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccCcEEEEeeeC
Confidence            99999999998754

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.49  E-value=0.00017  Score=43.05  Aligned_cols=56  Identities=13%  Similarity=0.120  Sum_probs=38.3

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c---------------------CCCeEEEEEeccccCCc
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~d~  223 (232)
                      .+..|++++|+|.+.|+...  .+.|+|.  |+.+      .                     ..+.+.|.+++.+.+|+
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt   89 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT   89 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence            45679999999999887544  3788874  1111      0                     12234566667777999


Q ss_pred             eEEEEec
Q psy15206        224 GSLQCKV  230 (232)
Q Consensus       224 g~Y~C~~  230 (232)
                      +.|.|..
T Consensus        90 A~YYCAr   96 (119)
T d1kxvc_          90 AMYYCKP   96 (119)
T ss_dssp             EEEEEEE
T ss_pred             ceEeeee
Confidence            9999964

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.49  E-value=0.00022  Score=43.13  Aligned_cols=67  Identities=22%  Similarity=0.358  Sum_probs=43.6

Q ss_pred             CCceEeecCCcEEEEeeeccCC--CCeEEEEeCC--ee---e---C----------CCCcEEee------CCeEEECCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHP--IPTISWRREN--NA---I---L----------PNGQTIFT------GSTLQIPRIT  134 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~---~---~----------~~~~~~~~------~~~l~i~~~~  134 (232)
                      +..++..+|+++.|.|...+..  ...+.||+..  +.   +   .          ...++...      ...|.|.++.
T Consensus         8 ~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~   87 (120)
T d1ypzf1           8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE   87 (120)
T ss_dssp             CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred             CCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence            4456677899999999876532  3458898842  11   1   0          01111111      1259999999


Q ss_pred             CCCCeEEEEEeEe
Q psy15206        135 KEDRGAYYCVAQN  147 (232)
Q Consensus       135 ~~~~g~y~C~~~~  147 (232)
                      .+|++.|.|....
T Consensus        88 ~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          88 EEDEAIYYCSYGE  100 (120)
T ss_dssp             GGGCSEEEEEECC
T ss_pred             cccceeEEEEEcC
Confidence            9999999997653

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.49  E-value=0.00026  Score=41.78  Aligned_cols=59  Identities=12%  Similarity=0.227  Sum_probs=38.4

Q ss_pred             cceeeeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c-C----------CCeE-----------EEEEecc
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V-N----------DEYH-----------SISNFGT  218 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~-~----------~~~~-----------~~~~~~~  218 (232)
                      +....+..|+++.|+|.+.|+...  .+.|.|.  |+.+      . .          .+++           .|.+++.
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL   86 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSL   86 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccccc
Confidence            344456789999999999987654  3788773  2111      1 1          1233           4444556


Q ss_pred             ccCCceEEEEe
Q psy15206        219 SEGTTGSLQCK  229 (232)
Q Consensus       219 ~~~d~g~Y~C~  229 (232)
                      ..+|++.|.|.
T Consensus        87 ~~eDtAvYYCA   97 (116)
T d1mjuh1          87 TSDDSAVYYCA   97 (116)
T ss_dssp             CGGGCEEEEEE
T ss_pred             CCCCceEEEEc
Confidence            66999999995

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.48  E-value=0.00017  Score=43.11  Aligned_cols=66  Identities=26%  Similarity=0.544  Sum_probs=44.1

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEEEEeC--CeeeC----------------CCCcEEe----eCCeEEECCCCCCCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAIL----------------PNGQTIF----TGSTLQIPRITKEDR  138 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~~----------------~~~~~~~----~~~~l~i~~~~~~~~  138 (232)
                      |....+.+|+++.|.|.... ....+.||+.  ++.+.                .......    ....|.|.++..+|+
T Consensus         6 P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   84 (112)
T d2bnub1           6 PKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQT   84 (112)
T ss_dssp             CSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGC
T ss_pred             CCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHC
Confidence            45567889999999998643 3456999973  22110                0001111    123799999999999


Q ss_pred             eEEEEEeEe
Q psy15206        139 GAYYCVAQN  147 (232)
Q Consensus       139 g~y~C~~~~  147 (232)
                      +.|.|....
T Consensus        85 avYyCA~~~   93 (112)
T d2bnub1          85 SVYFCASSY   93 (112)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEeecC
Confidence            999998753

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.45  E-value=0.00032  Score=41.66  Aligned_cols=56  Identities=11%  Similarity=0.286  Sum_probs=37.5

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec----------------------CCCeEEEEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV----------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~----------------------~~~~~~~~~~~~~~~  221 (232)
                      ..+..|++++|+|.+.|+...  .+.|+|.  |+.      +.                      ..+.+.|.+++.+.+
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~e   88 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSE   88 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCC
Confidence            346679999999999887544  4888874  211      11                      112234555566779


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        89 DtAvYYCA   96 (117)
T d1um5h1          89 DSAVYYCA   96 (117)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEEe
Confidence            99999996

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.45  E-value=0.00018  Score=42.91  Aligned_cols=55  Identities=13%  Similarity=0.228  Sum_probs=37.6

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c---------------------CCCeEEEEEeccccCCc
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~d~  223 (232)
                      .+..|+++.|+|.+.|+...  .+.|+|.  |+.+      .                     ..+.+.|.+++...+|+
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt   90 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT   90 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence            46679999999999887654  3788874  2111      0                     12234556666777999


Q ss_pred             eEEEEe
Q psy15206        224 GSLQCK  229 (232)
Q Consensus       224 g~Y~C~  229 (232)
                      +.|.|.
T Consensus        91 A~YYCA   96 (120)
T d1dn0b1          91 AVYYCA   96 (120)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            999995

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.45  E-value=0.00034  Score=41.50  Aligned_cols=57  Identities=11%  Similarity=0.264  Sum_probs=37.2

Q ss_pred             eeeeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c----------------------CCCeEEEEEecccc
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V----------------------NDEYHSISNFGTSE  220 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~----------------------~~~~~~~~~~~~~~  220 (232)
                      ...+..|+++.|+|.+.|+..-  .+.|.|.  |+.+      .                      ..+.+.|.+++...
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~   88 (117)
T d1mfah1           9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence            3445679999999999886433  3778763  2211      0                      11223455566677


Q ss_pred             CCceEEEEe
Q psy15206        221 GTTGSLQCK  229 (232)
Q Consensus       221 ~d~g~Y~C~  229 (232)
                      +|++.|.|.
T Consensus        89 eDtAvYYCA   97 (117)
T d1mfah1          89 EDSAVYYCT   97 (117)
T ss_dssp             GGCEEEEEE
T ss_pred             CcceEEEEe
Confidence            999999995

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.44  E-value=0.00028  Score=41.05  Aligned_cols=61  Identities=20%  Similarity=0.239  Sum_probs=38.8

Q ss_pred             eecCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCc----EEeeC------CeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         86 AKEGQSVQLECHAEGHPI--PTISWRRENNAILPNGQ----TIFTG------STLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~----~~~~~------~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ...|+.+.|.|.+.|..+  ..+.|+++|..+.....    ....+      +.|.+.   ..+...|+|.+.+..
T Consensus        14 ~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~s   86 (100)
T d1muja1          14 VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDDIYDCKVEHWG   86 (100)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTCCEEEEEECTT
T ss_pred             cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCCEEEEEEEECC
Confidence            345788999999999543  46999999977642111    11111      233333   345568999999864

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.44  E-value=0.0002  Score=42.41  Aligned_cols=56  Identities=11%  Similarity=0.170  Sum_probs=37.3

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-----------CCCe-----------EEEEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-----------NDEY-----------HSISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-----------~~~~-----------~~~~~~~~~~~  221 (232)
                      ..+..|+++.|+|.+.|+...  .+.|.|.  |+.      +.           -.++           +.|.+++.+.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            346679999999999987543  4788774  111      11           0123           44555566779


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        90 DTAvYYCA   97 (117)
T d1jpth1          90 DTAVYYCA   97 (117)
T ss_dssp             GCEEEEEE
T ss_pred             CceEEEEe
Confidence            99999995

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00014  Score=40.15  Aligned_cols=52  Identities=21%  Similarity=0.309  Sum_probs=36.3

Q ss_pred             eccCeEEEEEEeecCCCCeEEEeeCCEEecCCCe--------EEEEEeccc-cCCceEEEEec
Q psy15206        177 ALHHDMDLDCHIEAYPHPILYWAKDGEIVVNDEY--------HSISNFGTS-EGTTGSLQCKV  230 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~~--------~~~~~~~~~-~~d~g~Y~C~~  230 (232)
                      ..|.+|.|+|.-  .....+.|.+++..+.....        -.|...+.+ .+++|.|.|.+
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~   68 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYP   68 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEE
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEc
Confidence            369999999974  23467999999987764311        244444443 38999999965

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.00028  Score=41.83  Aligned_cols=57  Identities=12%  Similarity=0.318  Sum_probs=39.1

Q ss_pred             eeeeccCeEEEEEEeecC--CCCeEEEeeC--CE----Eec----------------------CCCeEEEEEeccccCCc
Q psy15206        174 IGQALHHDMDLDCHIEAY--PHPILYWAKD--GE----IVV----------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~--p~~~~~W~~~--g~----~~~----------------------~~~~~~~~~~~~~~~d~  223 (232)
                      ..+.+|++++|.|...+.  ..-...|+|.  |.    .+.                      ..+.+.+.+.+...+|+
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDs   84 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDS   84 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCC
Confidence            456789999999997653  3345789874  21    110                      12235666677788999


Q ss_pred             eEEEEec
Q psy15206        224 GSLQCKV  230 (232)
Q Consensus       224 g~Y~C~~  230 (232)
                      |.|.|.+
T Consensus        85 a~YyCa~   91 (110)
T d1u9ka_          85 GLYRCVI   91 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999985

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.42  E-value=0.00023  Score=42.17  Aligned_cols=56  Identities=13%  Similarity=0.255  Sum_probs=38.4

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c---------------------CCCeEEEEEeccccCCc
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~d~  223 (232)
                      .+..|++++|+|.+.|+...  .+.|+|.  |+.+      .                     ..+.+.|.+++.+.+|+
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt   90 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT   90 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence            45689999999999887543  4888874  2111      0                     12234566667777999


Q ss_pred             eEEEEec
Q psy15206        224 GSLQCKV  230 (232)
Q Consensus       224 g~Y~C~~  230 (232)
                      +.|.|..
T Consensus        91 AvYYCAr   97 (117)
T d1c5db1          91 AIYFCTR   97 (117)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEec
Confidence            9999953

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.42  E-value=0.00025  Score=42.08  Aligned_cols=56  Identities=13%  Similarity=0.255  Sum_probs=38.3

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c---------------------CCCeEEEEEeccccCCc
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~d~  223 (232)
                      .+..|++++|+|.+.|+...  .+.|+|.  |+.+      .                     ..+.+.|.+++.+.+|+
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDt   90 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccc
Confidence            45679999999999887544  4888874  2111      0                     12235566667777999


Q ss_pred             eEEEEec
Q psy15206        224 GSLQCKV  230 (232)
Q Consensus       224 g~Y~C~~  230 (232)
                      +.|.|..
T Consensus        91 AvYyCAr   97 (116)
T d7fabh1          91 AVYYCAR   97 (116)
T ss_dssp             EEEEEEE
T ss_pred             eEEEeee
Confidence            9999963

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.42  E-value=0.00024  Score=42.13  Aligned_cols=56  Identities=13%  Similarity=0.243  Sum_probs=36.7

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-----------CCCeEE-----------EEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-----------NDEYHS-----------ISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-----------~~~~~~-----------~~~~~~~~~  221 (232)
                      ..+..|+++.|+|.+.|+...  .+.|.|.  |+.      +.           -.+++.           |.+++...+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            346789999999999887543  3788774  211      11           022344           444555669


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        90 DtAvYYCA   97 (118)
T d1nlbh1          90 DTATYFCA   97 (118)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEEe
Confidence            99999995

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00031  Score=40.38  Aligned_cols=62  Identities=19%  Similarity=0.373  Sum_probs=37.8

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCcEEe---eCC---eEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQTIF---TGS---TLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~~~~---~~~---~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .|+.+.|.|.+.|. |. ..+.|.++|...........   .++   ......+...+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            47789999999994 43 36999999987543211111   111   11122233445568999999864

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.40  E-value=0.00032  Score=41.89  Aligned_cols=67  Identities=18%  Similarity=0.418  Sum_probs=44.2

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeCCee--e---------------CCCCcE---Eee--CCeEEECCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRENNA--I---------------LPNGQT---IFT--GSTLQIPRITKED  137 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~--~---------------~~~~~~---~~~--~~~l~i~~~~~~~  137 (232)
                      .|....+.+|+++.|.|.... ....+.||+....  +               ....++   ...  ...|.|.++..+|
T Consensus         7 ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   85 (113)
T d1nfdb1           7 SPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELED   85 (113)
T ss_dssp             ECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGG
T ss_pred             cCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCC
Confidence            355667889999999998643 3346999985321  1               000111   111  1368999999999


Q ss_pred             CeEEEEEeEe
Q psy15206        138 RGAYYCVAQN  147 (232)
Q Consensus       138 ~g~y~C~~~~  147 (232)
                      +|.|.|.+..
T Consensus        86 sa~YyCa~~~   95 (113)
T d1nfdb1          86 SAMYFCASSL   95 (113)
T ss_dssp             CEEECEEEES
T ss_pred             ceeEEEEeec
Confidence            9999998654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.39  E-value=0.0004  Score=41.14  Aligned_cols=55  Identities=11%  Similarity=0.258  Sum_probs=36.6

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-----------CCCeE-----------EEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-----------NDEYH-----------SISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-----------~~~~~-----------~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+...  .+.|.|.  |+.      +.           -.+++           .|.+++.+.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eD   90 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSED   90 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCc
Confidence            45679999999999987544  3788873  111      11           01233           44455666799


Q ss_pred             ceEEEEe
Q psy15206        223 TGSLQCK  229 (232)
Q Consensus       223 ~g~Y~C~  229 (232)
                      ++.|.|.
T Consensus        91 TAvYYCA   97 (117)
T d1jnhb1          91 SAVYSCS   97 (117)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEEe
Confidence            9999995

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.38  E-value=0.00025  Score=42.03  Aligned_cols=55  Identities=11%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c---------------------CCCeEEEEEeccccCCc
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~d~  223 (232)
                      .+..|+++.|+|.+.|+..-  .+.|.|.  |..+      .                     ..+.+.|.+++.+.+|+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT   90 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence            45679999999999887544  3778874  1111      0                     12234566667778999


Q ss_pred             eEEEEe
Q psy15206        224 GSLQCK  229 (232)
Q Consensus       224 g~Y~C~  229 (232)
                      +.|.|.
T Consensus        91 AvYYCA   96 (116)
T d1a2yb_          91 ARYYCA   96 (116)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            999996

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.37  E-value=4.8e-05  Score=46.69  Aligned_cols=63  Identities=17%  Similarity=0.198  Sum_probs=40.8

Q ss_pred             ecCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCC---------------cEEeeCCeEEECCCCCCCCe-EEEEEeEeC
Q psy15206         87 KEGQSVQLECHAEGHPI--PTISWRRENNAILPNG---------------QTIFTGSTLQIPRITKEDRG-AYYCVAQNG  148 (232)
Q Consensus        87 ~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~---------------~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~  148 (232)
                      ..+..+.|.|.+.+..+  ..+.|+++|+.+....               ......+.|.+..-...+.| .|+|.+.+.
T Consensus        18 ~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          18 SHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred             ccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHhCCCCCEEEEEEEEC
Confidence            34677999999998443  3599999988764211               11112245666665555555 799999985


Q ss_pred             C
Q psy15206        149 I  149 (232)
Q Consensus       149 ~  149 (232)
                      .
T Consensus        98 ~   98 (127)
T d1ogae2          98 G   98 (127)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.37  E-value=0.00034  Score=41.25  Aligned_cols=56  Identities=9%  Similarity=0.193  Sum_probs=37.0

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-C----------CCe-----------EEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-N----------DEY-----------HSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-~----------~~~-----------~~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+...  .+.|+|.  |+.      +. .          .++           +.|.+++...+|
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eD   90 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSED   90 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCc
Confidence            46689999999999887544  3778774  211      11 0          123           345555666799


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|..
T Consensus        91 tAvYYCA~   98 (114)
T d1indh1          91 TALYFCAS   98 (114)
T ss_dssp             CEEEEEEC
T ss_pred             ccEEEECC
Confidence            99999963

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.36  E-value=0.00039  Score=41.38  Aligned_cols=56  Identities=13%  Similarity=0.283  Sum_probs=37.0

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-----------CCCeE-----------EEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-----------NDEYH-----------SISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-----------~~~~~-----------~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+...  .+.|+|.  |+.      +.           -.+++           .|.+++.+.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eD   90 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCccc
Confidence            45679999999999987544  3788764  111      11           01233           44555666799


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|..
T Consensus        91 TAvYYCAr   98 (119)
T d1rz7h1          91 TAVYYCAA   98 (119)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999964

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.35  E-value=0.00028  Score=41.86  Aligned_cols=57  Identities=9%  Similarity=0.152  Sum_probs=37.3

Q ss_pred             eeeeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-C----------CCeE-----------EEEEecccc
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-N----------DEYH-----------SISNFGTSE  220 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-~----------~~~~-----------~~~~~~~~~  220 (232)
                      ...+..|+++.|+|.+.|+..-  .+.|.|.  |+.      +. .          .+++           .|.+++.+.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~   88 (118)
T d2jelh1           9 PELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccccc
Confidence            3346689999999999887644  3788764  211      11 0          1233           444556667


Q ss_pred             CCceEEEEe
Q psy15206        221 GTTGSLQCK  229 (232)
Q Consensus       221 ~d~g~Y~C~  229 (232)
                      +|++.|.|.
T Consensus        89 eDTAvYYCA   97 (118)
T d2jelh1          89 EDSAIYYCA   97 (118)
T ss_dssp             GGCEEEEEE
T ss_pred             CcceeeeEE
Confidence            999999994

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.35  E-value=0.00053  Score=40.65  Aligned_cols=55  Identities=13%  Similarity=0.230  Sum_probs=36.4

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c----------------------CCCeEEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V----------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~----------------------~~~~~~~~~~~~~~~d  222 (232)
                      .+..|++++|.|.+.|+...  .+.|+|.  |+.+      .                      ..+...|.+.+...+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eD   90 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFED   90 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCC
Confidence            35679999999999876433  4788764  2111      0                      1122345566677799


Q ss_pred             ceEEEEe
Q psy15206        223 TGSLQCK  229 (232)
Q Consensus       223 ~g~Y~C~  229 (232)
                      ++.|.|.
T Consensus        91 tAvYYCA   97 (115)
T d1f3dh1          91 SAVYYCA   97 (115)
T ss_dssp             CEEEEEE
T ss_pred             cEEEEEe
Confidence            9999995

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.35  E-value=0.00041  Score=41.46  Aligned_cols=56  Identities=14%  Similarity=0.291  Sum_probs=36.4

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c-----------CCCeE-----------EEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V-----------NDEYH-----------SISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~-----------~~~~~-----------~~~~~~~~~~d  222 (232)
                      .+..|++++|+|.+.|+...  .+.|+|.  |+.+      .           -.+++           .|.+.+...+|
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eD   90 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSND   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCc
Confidence            46679999999999876533  4788874  2111      1           01233           44555666789


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|..
T Consensus        91 tA~YYCAr   98 (120)
T d1pg7x1          91 SAVYYCAR   98 (120)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEeee
Confidence            99999963

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.35  E-value=6.7e-06  Score=47.94  Aligned_cols=56  Identities=16%  Similarity=0.290  Sum_probs=38.5

Q ss_pred             eeeeccCeEEEEEEeecCCCCeEEEeeC--CEEec-----------------------CCCeEEEEEeccccCCceEEEE
Q psy15206        174 IGQALHHDMDLDCHIEAYPHPILYWAKD--GEIVV-----------------------NDEYHSISNFGTSEGTTGSLQC  228 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~~~~W~~~--g~~~~-----------------------~~~~~~~~~~~~~~~d~g~Y~C  228 (232)
                      +.+.+|++++|.|...+. ...+.|+|.  |..+.                       ....+.|.+.++..+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            457789999999986543 346999974  22110                       1123466777888899999999


Q ss_pred             ec
Q psy15206        229 KV  230 (232)
Q Consensus       229 ~~  230 (232)
                      .+
T Consensus        82 A~   83 (96)
T d1ymmd1          82 AT   83 (96)
T ss_dssp             EE
T ss_pred             eE
Confidence            65

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.34  E-value=0.00045  Score=41.63  Aligned_cols=56  Identities=11%  Similarity=0.183  Sum_probs=36.7

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c----------------------CCCeEEEEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V----------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~----------------------~~~~~~~~~~~~~~~  221 (232)
                      ..+..|++++|+|.+.|+..-  .+.|.|.  |+.+      .                      ..+.+.|.+++.+.+
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~e   89 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSE   89 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcc
Confidence            346679999999999886543  3777763  2111      0                      112344555566779


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        90 DtAvYYCA   97 (125)
T d1rihh1          90 DSAVYYCA   97 (125)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEEe
Confidence            99999995

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.34  E-value=0.00045  Score=41.36  Aligned_cols=55  Identities=11%  Similarity=0.250  Sum_probs=38.1

Q ss_pred             eeeccCeEEEEEEeecCCC----CeEEEeeC--CEEe------------------------c---CCCeEEEEEeccccC
Q psy15206        175 GQALHHDMDLDCHIEAYPH----PILYWAKD--GEIV------------------------V---NDEYHSISNFGTSEG  221 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~----~~~~W~~~--g~~~------------------------~---~~~~~~~~~~~~~~~  221 (232)
                      .+..|++++|.|.+.|+..    ..+.|+|.  |..+                        .   ..+.+.|.+.+...+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            3567999999999876532    35789874  2110                        0   123466777888889


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        91 DsAvYyCA   98 (120)
T d2agjh1          91 DTATYYCA   98 (120)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEeeE
Confidence            99999995

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=6.3e-05  Score=41.21  Aligned_cols=48  Identities=17%  Similarity=0.263  Sum_probs=33.8

Q ss_pred             ccCeEEEEEEeecCCCCeEEEeeCCEE--ecCCCeEEEEEeccccCCceEEEEe
Q psy15206        178 LHHDMDLDCHIEAYPHPILYWAKDGEI--VVNDEYHSISNFGTSEGTTGSLQCK  229 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~~~~W~~~g~~--~~~~~~~~~~~~~~~~~d~g~Y~C~  229 (232)
                      .|+.+.|.|...-  ...|.|.+|+..  ...+..+.+...  ...|+|+|+|.
T Consensus        20 ~~~~V~L~C~t~e--E~~I~W~kd~~se~~~~GntltV~Vk--E~~~aGnYTCh   69 (87)
T d3d85d1          20 PGEMVVLTCDTPE--EDGITWTLDQSSEVLGSGKTLTIQVK--EFGDAGQYTCH   69 (87)
T ss_dssp             CCEEEEEECSSSC--CSSCEEEETTCCCCCEESSEEEEEEC--SGGGCEEEEEE
T ss_pred             CccEEEEecCCCc--ccccEEeeCCccccccCCCEEEEEEE--eccCCcceeEe
Confidence            4678999995422  236999999765  345566666655  33789999996

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.33  E-value=0.00042  Score=41.17  Aligned_cols=55  Identities=11%  Similarity=0.203  Sum_probs=36.9

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c-----------CCCe-----------EEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V-----------NDEY-----------HSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~-----------~~~~-----------~~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+...  .+.|.|.  |+.+      .           -.++           +.|.+++.+.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD   90 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCc
Confidence            46679999999999887544  3778764  2111      1           0122           345556667799


Q ss_pred             ceEEEEe
Q psy15206        223 TGSLQCK  229 (232)
Q Consensus       223 ~g~Y~C~  229 (232)
                      ++.|.|.
T Consensus        91 tAvYYCA   97 (118)
T d2fbjh1          91 TALYYCA   97 (118)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEee
Confidence            9999996

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00045  Score=40.61  Aligned_cols=42  Identities=12%  Similarity=0.229  Sum_probs=25.1

Q ss_pred             ccEEE-eccceeeeeccCeEEEEEEeecCCCC--eEEEeeCCEEe
Q psy15206        164 APIVT-VQSTRIGQALHHDMDLDCHIEAYPHP--ILYWAKDGEIV  205 (232)
Q Consensus       164 ~p~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~g~~~  205 (232)
                      +|.+. ..+........+.+.|.|.+.|+.+.  .|+|.++|..+
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~   49 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSD   49 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCE
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccc
Confidence            44443 33333334456789999999996543  69999988654

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.31  E-value=0.00047  Score=40.27  Aligned_cols=28  Identities=11%  Similarity=0.334  Sum_probs=21.4

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD  201 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~  201 (232)
                      ..+..|++++|+|.+.|+...  -+.|.|.
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ   39 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQ   39 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CeECCCCCeEEEEEECCCccccccccccee
Confidence            346789999999999887544  3788764

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.31  E-value=0.0006  Score=41.01  Aligned_cols=55  Identities=11%  Similarity=0.219  Sum_probs=36.8

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c----------------------CCCeEEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V----------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~----------------------~~~~~~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+...  .+.|.|.  |+.+      .                      ..+.+.|.+++.+.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eD   90 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCccc
Confidence            45679999999999886543  3788763  2111      0                      1123455556667799


Q ss_pred             ceEEEEe
Q psy15206        223 TGSLQCK  229 (232)
Q Consensus       223 ~g~Y~C~  229 (232)
                      ++.|.|.
T Consensus        91 TavYYCA   97 (127)
T d2fx7h1          91 TAVYYCA   97 (127)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEEe
Confidence            9999996

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.31  E-value=0.00045  Score=41.26  Aligned_cols=58  Identities=12%  Similarity=0.196  Sum_probs=38.2

Q ss_pred             eeeeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-----------CCCe-----------EEEEEecccc
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-----------NDEY-----------HSISNFGTSE  220 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-----------~~~~-----------~~~~~~~~~~  220 (232)
                      ...+..|+++.|+|.+.|+..-  .+.|+|.  |+.      +.           -.++           +.|.+++.+.
T Consensus        10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~   89 (122)
T d1vgeh1          10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (122)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence            3456789999999999887544  3788873  111      11           0123           3455556677


Q ss_pred             CCceEEEEec
Q psy15206        221 GTTGSLQCKV  230 (232)
Q Consensus       221 ~d~g~Y~C~~  230 (232)
                      +|++.|.|..
T Consensus        90 eDtA~YYCAr   99 (122)
T d1vgeh1          90 EDTAVYYCAR   99 (122)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999963

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.30  E-value=0.0003  Score=41.57  Aligned_cols=77  Identities=17%  Similarity=0.220  Sum_probs=44.4

Q ss_pred             CCcEEecCCCCceEeecCCcEEEEeeeccCCCC--eEEEEeCCeeeCCCCc---------EEeeCCeEEECCCCCCCCeE
Q psy15206         72 TPPVILNNSPQLSVAKEGQSVQLECHAEGHPIP--TISWRRENNAILPNGQ---------TIFTGSTLQIPRITKEDRGA  140 (232)
Q Consensus        72 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~~~g~  140 (232)
                      .+|......+....+..+..+.|.|.+.+..+.  .+.|+++|..+.....         .....+.|.+..-..+  ..
T Consensus         7 ~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~--~~   84 (107)
T d1hxmb2           7 VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLD--KE   84 (107)
T ss_dssp             CSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGG--SC
T ss_pred             CCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCC--Ce
Confidence            344433223333334457789999999984433  5999999876532211         1111235666554432  26


Q ss_pred             EEEEeEeCCC
Q psy15206        141 YYCVAQNGIG  150 (232)
Q Consensus       141 y~C~~~~~~~  150 (232)
                      |+|.+.+...
T Consensus        85 ytC~V~H~s~   94 (107)
T d1hxmb2          85 HRCIVRHENN   94 (107)
T ss_dssp             EEEEEEETTS
T ss_pred             EEEEEEECCC
Confidence            9999998643

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.30  E-value=0.00061  Score=40.92  Aligned_cols=56  Identities=11%  Similarity=0.209  Sum_probs=37.1

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c-----------CCCe-----------EEEEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V-----------NDEY-----------HSISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~-----------~~~~-----------~~~~~~~~~~~  221 (232)
                      ..+..|+++.|+|.+.|+..-  .+.|.|.  |+.+      .           -.++           +.|.+++.+.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~e   88 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSE   88 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCC
Confidence            346679999999999987544  3788763  2111      1           0123           44555566779


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        89 DTAvYYCA   96 (126)
T d1lmka1          89 DSAVYYCA   96 (126)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEEe
Confidence            99999995

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.29  E-value=0.00054  Score=40.74  Aligned_cols=57  Identities=11%  Similarity=0.210  Sum_probs=38.3

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c----------------------CCCeEEEEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V----------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~----------------------~~~~~~~~~~~~~~~  221 (232)
                      ..+..|+++.|+|.+.|+...  .+.|.|.  |+.+      .                      ..+.+.|.+++.+.+
T Consensus        10 ~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~e   89 (120)
T d1ad9b1          10 EVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSE   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCC
Confidence            346689999999999887544  3778764  1111      1                      122345556667779


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |++.|.|..
T Consensus        90 DTAvYYCAr   98 (120)
T d1ad9b1          90 DTAFYFCAR   98 (120)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEE
Confidence            999999963

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.29  E-value=0.00014  Score=42.50  Aligned_cols=55  Identities=11%  Similarity=0.196  Sum_probs=35.0

Q ss_pred             eeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c---------------------CCCeEEEEEeccccCCce
Q psy15206        176 QALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       176 ~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~d~g  224 (232)
                      +..|+++.|+|.+.|+...  .+.|+|.  |+.+      .                     ..+.+.|.+++.+.+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            4679999999999876433  3778774  1111      0                     122345666677779999


Q ss_pred             EEEEec
Q psy15206        225 SLQCKV  230 (232)
Q Consensus       225 ~Y~C~~  230 (232)
                      .|.|..
T Consensus        85 vYyCA~   90 (107)
T d1sjva_          85 VYYCYT   90 (107)
T ss_dssp             EEEEEE
T ss_pred             eeeEec
Confidence            999964

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.29  E-value=0.00031  Score=39.59  Aligned_cols=50  Identities=10%  Similarity=0.142  Sum_probs=32.6

Q ss_pred             CeEEEEEEeecCCCC--eEEEeeCCEEecC--------CCeEEE-EEeccccCCceEEEEecC
Q psy15206        180 HDMDLDCHIEAYPHP--ILYWAKDGEIVVN--------DEYHSI-SNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       180 ~~~~l~C~~~~~p~~--~~~W~~~g~~~~~--------~~~~~~-~~~~~~~~d~g~Y~C~~~  231 (232)
                      +.++|.|.+.|+.+.  .+.|.+||..+..        ++.|.. +....  .....|+|.|.
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~--~~~~~yTC~V~   74 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKY--EDSNSVTCSVQ   74 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEE--TTTTTCEEEEE
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEec--CCCCEEEEEEE
Confidence            446899999998665  4899999976542        233332 22222  44457999873

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.00042  Score=41.40  Aligned_cols=56  Identities=11%  Similarity=0.240  Sum_probs=37.1

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec----------------------CCCeEEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV----------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~----------------------~~~~~~~~~~~~~~~d  222 (232)
                      .+..|++++|.|.+.|+...  .+.|+|.  |+.      +.                      ..+.+.|.+.+...+|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            45679999999998876432  4788874  211      10                      1123455666777799


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|..
T Consensus        91 sAvYYCA~   98 (119)
T d1qnzh_          91 SAVYYCAI   98 (119)
T ss_dssp             CEEEEEEE
T ss_pred             eeEEEEEE
Confidence            99999964

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.28  E-value=0.00058  Score=40.91  Aligned_cols=56  Identities=11%  Similarity=0.255  Sum_probs=37.4

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec----------------------CCCeEEEEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV----------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~----------------------~~~~~~~~~~~~~~~  221 (232)
                      ..+..|+++.|+|.+.|+..-  .+.|+|.  |+.      +.                      ..+...+.+++.+.+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~e   89 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPS   89 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccc
Confidence            346789999999999987543  3788763  111      11                      112345555666779


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        90 DTA~YYCA   97 (124)
T d2b1hh1          90 DTALYYCA   97 (124)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEEe
Confidence            99999995

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.27  E-value=0.00027  Score=41.12  Aligned_cols=52  Identities=13%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             ccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c----------------------CCCeEEEEEeccccCCceE
Q psy15206        178 LHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V----------------------NDEYHSISNFGTSEGTTGS  225 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~----------------------~~~~~~~~~~~~~~~d~g~  225 (232)
                      .|++++|+|.+.|+...  .+.|+|.  |+.+      .                      ..+...|.+++...+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            37899999999886543  4888864  2211      0                      1123456666777799999


Q ss_pred             EEEe
Q psy15206        226 LQCK  229 (232)
Q Consensus       226 Y~C~  229 (232)
                      |.|.
T Consensus        81 YYCA   84 (103)
T d1oari_          81 YYCA   84 (103)
T ss_dssp             EEEE
T ss_pred             EEeE
Confidence            9996

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.27  E-value=0.00039  Score=41.81  Aligned_cols=57  Identities=11%  Similarity=0.277  Sum_probs=37.2

Q ss_pred             eeeeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-C----------CCeE-----------EEEEecccc
Q psy15206        173 RIGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-N----------DEYH-----------SISNFGTSE  220 (232)
Q Consensus       173 ~~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-~----------~~~~-----------~~~~~~~~~  220 (232)
                      ...+..|+++.|+|.+.|+..-  .+.|.|.  |+.      +. .          .+++           .|.+++.+.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~   88 (127)
T d1n0xh1           9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence            3456789999999999887544  3788774  211      11 0          1233           344455566


Q ss_pred             CCceEEEEe
Q psy15206        221 GTTGSLQCK  229 (232)
Q Consensus       221 ~d~g~Y~C~  229 (232)
                      +|++.|.|.
T Consensus        89 eDtAvYYCA   97 (127)
T d1n0xh1          89 ADTAVYYCA   97 (127)
T ss_dssp             GGCEEEEEE
T ss_pred             CCceEEEEE
Confidence            999999996

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.26  E-value=0.00046  Score=41.05  Aligned_cols=57  Identities=11%  Similarity=0.159  Sum_probs=37.4

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ecC-----------CCe-----------EEEEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VVN-----------DEY-----------HSISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~~-----------~~~-----------~~~~~~~~~~~  221 (232)
                      ..+..|+++.|+|.+.|+...  .+.|+|.  |+.      +..           .++           +.|.+++.+.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (119)
T d1eapb1          10 ELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSE   89 (119)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCC
Confidence            345679999999999887543  3888874  211      110           123           34555566679


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |++.|.|..
T Consensus        90 DTAvYYCAr   98 (119)
T d1eapb1          90 DSAVYFCKR   98 (119)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEE
Confidence            999999963

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.26  E-value=0.00055  Score=40.64  Aligned_cols=56  Identities=11%  Similarity=0.278  Sum_probs=36.5

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec----------------------CCCeEEEEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV----------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~----------------------~~~~~~~~~~~~~~~  221 (232)
                      ..+..|+++.|+|.+.|+..-  .+.|.|.  |+.      +.                      ..+.+.|.+++.+.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~e   89 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCC
Confidence            346679999999999886533  4778763  211      10                      112234555566779


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        90 DtAvYYCA   97 (118)
T d1ct8b1          90 DSAIYYCA   97 (118)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEEe
Confidence            99999995

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00096  Score=39.12  Aligned_cols=64  Identities=23%  Similarity=0.353  Sum_probs=39.5

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCC---------cEEeeCCeEEECCCCCC--CCeEEEEEeEeCCCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNG---------QTIFTGSTLQIPRITKE--DRGAYYCVAQNGIGR  151 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~--~~g~y~C~~~~~~~~  151 (232)
                      ....+.|.|.+.|+ |. ..++|.+++.......         ......+.|.+..-...  ....|+|.+.+....
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             CCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            45779999999984 43 4699999886543211         11112235666655543  334799999986543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.26  E-value=0.00069  Score=40.99  Aligned_cols=56  Identities=9%  Similarity=0.188  Sum_probs=37.1

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-C----------CCe-----------EEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-N----------DEY-----------HSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-~----------~~~-----------~~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+..-  .+.|+|.  |+.      +. .          .++           +.|.+.+.+.+|
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eD   90 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSED   90 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSS
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCccc
Confidence            46689999999999887543  3888864  211      11 0          123           345555667799


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|.-
T Consensus        91 TAvYYCAr   98 (135)
T d1ieha_          91 TAVYYCAK   98 (135)
T ss_dssp             CEEEEEEE
T ss_pred             ceeeEEEE
Confidence            99999963

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.0021  Score=35.22  Aligned_cols=68  Identities=24%  Similarity=0.374  Sum_probs=45.6

Q ss_pred             ceEeecCCcEEEEeeecc-CCCCeEEEEeCCeee---CC---CCcEEee------CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         83 LSVAKEGQSVQLECHAEG-HPIPTISWRRENNAI---LP---NGQTIFT------GSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~-~~~~~~~W~~~~~~~---~~---~~~~~~~------~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ...+..|+.+.|.|.+.- ...|.++|-|-.+..   ..   .......      -..|-+..+..+|.|.|.|.+.-..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            356778999999999864 567889997754321   11   1111111      1246778999999999999987543


Q ss_pred             C
Q psy15206        150 G  150 (232)
Q Consensus       150 ~  150 (232)
                      +
T Consensus        92 ~   92 (104)
T d1xaua_          92 Q   92 (104)
T ss_dssp             E
T ss_pred             h
Confidence            3

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0002  Score=42.01  Aligned_cols=26  Identities=15%  Similarity=0.326  Sum_probs=20.6

Q ss_pred             ccCeEEEEEEeecCCCC--eEEEeeCCE
Q psy15206        178 LHHDMDLDCHIEAYPHP--ILYWAKDGE  203 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~  203 (232)
                      .++.++|.|.+.++.+.  .|.|.++|.
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~   46 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGAL   46 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCC
Confidence            56789999999887544  599988764

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.25  E-value=0.0006  Score=41.19  Aligned_cols=56  Identities=9%  Similarity=0.155  Sum_probs=36.9

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c-----------CCCe-----------EEEEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V-----------NDEY-----------HSISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~-----------~~~~-----------~~~~~~~~~~~  221 (232)
                      ..+..|+++.|+|.+.|+...  .+.|.|.  |+.+      .           -.++           ..|.+++.+.+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD   88 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC
Confidence            346689999999999886533  4788774  2111      1           0123           34555566669


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        89 DtAvYyCA   96 (130)
T d1rhhb1          89 DTAVYYCA   96 (130)
T ss_dssp             GCEEEEEE
T ss_pred             CcEEEEEE
Confidence            99999996

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.24  E-value=0.0008  Score=39.97  Aligned_cols=55  Identities=13%  Similarity=0.304  Sum_probs=37.7

Q ss_pred             eeeccCeEEEEEEeecCCCC---eEEEeeC--CEEec---------------------------CCCeEEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP---ILYWAKD--GEIVV---------------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~---~~~W~~~--g~~~~---------------------------~~~~~~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+...   .+.|.|.  |+.+.                           ..+.+.|.+++.+.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eD   90 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTED   90 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCC
Confidence            46679999999999987653   3688763  32211                           1223455556677799


Q ss_pred             ceEEEEe
Q psy15206        223 TGSLQCK  229 (232)
Q Consensus       223 ~g~Y~C~  229 (232)
                      ++.|.|.
T Consensus        91 TAvYYCA   97 (119)
T d1ncwh1          91 TATYYCA   97 (119)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEEe
Confidence            9999995

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0005  Score=41.36  Aligned_cols=57  Identities=14%  Similarity=0.152  Sum_probs=37.1

Q ss_pred             eeeccCeEEEEEEeecCCCC--e-EEEeeC--CE--Ee-----------------------cCCCeEEEEEeccccCCce
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--I-LYWAKD--GE--IV-----------------------VNDEYHSISNFGTSEGTTG  224 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~-~~W~~~--g~--~~-----------------------~~~~~~~~~~~~~~~~d~g  224 (232)
                      .+..|++++|.|...+....  . +.|++.  +.  .+                       ...+.+.|.+.++..+|+|
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   90 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD   90 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence            35578899999987544322  2 345543  11  01                       0234567888889999999


Q ss_pred             EEEEecC
Q psy15206        225 SLQCKVP  231 (232)
Q Consensus       225 ~Y~C~~~  231 (232)
                      .|.|.+.
T Consensus        91 vYyCa~~   97 (118)
T d1yjdc1          91 IYFCKIE   97 (118)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999763

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.23  E-value=0.0007  Score=40.14  Aligned_cols=55  Identities=9%  Similarity=0.142  Sum_probs=37.5

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c---------------------CCCeEEEEEeccccCCc
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~d~  223 (232)
                      .+..|+++.|+|.+.|+..-  .+.|.|.  |+.+      .                     ..+.+.+.+++.+.+|+
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt   90 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence            45679999999999887544  4788874  2111      1                     12234555666677999


Q ss_pred             eEEEEe
Q psy15206        224 GSLQCK  229 (232)
Q Consensus       224 g~Y~C~  229 (232)
                      +.|.|.
T Consensus        91 A~YyCA   96 (118)
T d1lo4h1          91 AIYYCA   96 (118)
T ss_dssp             EEEEEE
T ss_pred             eEEEec
Confidence            999996

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.23  E-value=0.00065  Score=40.55  Aligned_cols=55  Identities=13%  Similarity=0.268  Sum_probs=37.3

Q ss_pred             eeeccCeEEEEEEeecCCC--C--eEEEeeC--CEEe------c---------------------CCCeEEEEEeccccC
Q psy15206        175 GQALHHDMDLDCHIEAYPH--P--ILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~--~--~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~  221 (232)
                      .+..|++++|+|.+.|+..  .  .+.|+|.  |+.+      .                     ..+.+.|.+++.+.+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            4567999999999988643  2  3789874  2111      1                     122345666677779


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        91 DtAvYYCA   98 (120)
T d1ai1h1          91 DTAMYYCS   98 (120)
T ss_dssp             GCEEEEEE
T ss_pred             ceeEEEEE
Confidence            99999995

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.23  E-value=0.00059  Score=40.62  Aligned_cols=68  Identities=19%  Similarity=0.444  Sum_probs=46.2

Q ss_pred             CCCceEeecCCcEEEEeeeccCCCCeEEEEeC--Ceee------CC----------CCcE---EeeCCeEEECCCCCCCC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPIPTISWRRE--NNAI------LP----------NGQT---IFTGSTLQIPRITKEDR  138 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~--~~~~------~~----------~~~~---~~~~~~l~i~~~~~~~~  138 (232)
                      .|....+.+|+++.|.|...+.....+.||+.  |+.+      ..          ..++   ...+..|.|.....+|+
T Consensus         7 ~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~ds   86 (112)
T d1fo0b_           7 NPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQG   86 (112)
T ss_dssp             ECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSC
T ss_pred             CCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCC
Confidence            35556777899999999976655567999985  2221      00          0111   11235788888999999


Q ss_pred             eEEEEEeEe
Q psy15206        139 GAYYCVAQN  147 (232)
Q Consensus       139 g~y~C~~~~  147 (232)
                      +.|.|....
T Consensus        87 a~Y~Ca~~~   95 (112)
T d1fo0b_          87 RTLYCTCSA   95 (112)
T ss_dssp             EEEEEEEES
T ss_pred             ccEEEEEec
Confidence            999999754

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.002  Score=36.79  Aligned_cols=59  Identities=17%  Similarity=0.338  Sum_probs=37.4

Q ss_pred             cCCcEEEEeeecc-CCC-CeEEEEeCCeeeCCCC----cEEe-eC------CeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEG-HPI-PTISWRRENNAILPNG----QTIF-TG------STLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~-~~~-~~~~W~~~~~~~~~~~----~~~~-~~------~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .+..+.|.|.+.| +|. ..+.|+++|..+....    .... .+      +.|.+   ...+...|+|.+.+..
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v---~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          14 TSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAV---PPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEE---CTTCGGGEEEEEECTT
T ss_pred             CCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEE---CCCCCCEEEEEEEeCC
Confidence            4567899999999 454 3799999998864211    1111 11      23333   3345567999999863

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.21  E-value=0.0005  Score=41.27  Aligned_cols=56  Identities=13%  Similarity=0.266  Sum_probs=37.0

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-C----------CCeEEE-----------EEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-N----------DEYHSI-----------SNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-~----------~~~~~~-----------~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+...  .+.|.|.  |+.      +. .          .+++.|           .+++.+.+|
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD   89 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED   89 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence            46679999999999887544  4888874  111      11 1          233444           444556699


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|..
T Consensus        90 tAvYYCAr   97 (124)
T d1zvya1          90 TAIYTCGA   97 (124)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999964

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.19  E-value=0.00089  Score=38.93  Aligned_cols=60  Identities=15%  Similarity=0.196  Sum_probs=37.9

Q ss_pred             ecCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc----EEe------eCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         87 KEGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ----TIF------TGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        87 ~~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~----~~~------~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ..|+...|.|.+.|. |. ..+.|+++|..+.....    ...      ..+.|.+..   .+...|+|.+.+..
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   88 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWG   88 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECC
Confidence            356778999999994 43 36999999987643111    111      122444443   33457999999864

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.19  E-value=0.00062  Score=40.56  Aligned_cols=56  Identities=13%  Similarity=0.214  Sum_probs=37.0

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec----------------------CCCeEEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV----------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~----------------------~~~~~~~~~~~~~~~d  222 (232)
                      .+..|++++|+|.+.|+..-  .+.|.|.  |+.      +.                      ..+.+.|.+++.+.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eD   90 (121)
T d2p49b1          11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPED   90 (121)
T ss_dssp             EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccc
Confidence            45679999999999876443  4788774  111      11                      1123445556667789


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|..
T Consensus        91 tAvYYCAr   98 (121)
T d2p49b1          91 TATYYCAA   98 (121)
T ss_dssp             CEEEEEEE
T ss_pred             eeEEeeec
Confidence            99999964

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.19  E-value=0.00067  Score=40.83  Aligned_cols=56  Identities=9%  Similarity=0.154  Sum_probs=36.6

Q ss_pred             eeeccCeEEEEEEeecCCCCe--EEEeeC--CEE------ec-----------CCCe-----------EEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHPI--LYWAKD--GEI------VV-----------NDEY-----------HSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~~--~~W~~~--g~~------~~-----------~~~~-----------~~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+..-.  +.|.|.  |+.      +.           -.++           ..|.+++.+.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDD   90 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccC
Confidence            466899999999999875443  678663  111      10           0123           444555666699


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|..
T Consensus        91 TA~YYCAr   98 (128)
T d2nxyd1          91 TAVYFCAG   98 (128)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEeE
Confidence            99999963

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.19  E-value=0.00054  Score=40.97  Aligned_cols=55  Identities=9%  Similarity=0.186  Sum_probs=36.2

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-----------CCCeE-----------EEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-----------NDEYH-----------SISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-----------~~~~~-----------~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+.--  .+.|+|.  |+.      +.           -.+++           .|.+++.+.+|
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eD   90 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSED   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCc
Confidence            45679999999999887543  3788773  211      11           01233           44555666799


Q ss_pred             ceEEEEe
Q psy15206        223 TGSLQCK  229 (232)
Q Consensus       223 ~g~Y~C~  229 (232)
                      ++.|.|.
T Consensus        91 tAvYYCA   97 (123)
T d1mqkh_          91 TAMYYCV   97 (123)
T ss_dssp             CEEEEEE
T ss_pred             ccceeEE
Confidence            9999995

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.18  E-value=0.0012  Score=39.33  Aligned_cols=62  Identities=21%  Similarity=0.482  Sum_probs=41.5

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CC----------CCcEEee--C----CeEEECCCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LP----------NGQTIFT--G----STLQIPRITKED  137 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~----------~~~~~~~--~----~~l~i~~~~~~~  137 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.+      ..          ..++...  .    ..|.|.+++.+|
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD   89 (120)
T d1dn0b1          10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (120)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence            45778999999999988543  34889874  2211      11          1122221  1    158999999999


Q ss_pred             CeEEEEEe
Q psy15206        138 RGAYYCVA  145 (232)
Q Consensus       138 ~g~y~C~~  145 (232)
                      .+.|.|..
T Consensus        90 tA~YYCAr   97 (120)
T d1dn0b1          90 TAVYYCAR   97 (120)
T ss_dssp             CEEEEEEE
T ss_pred             ccEEEEEe
Confidence            99999953

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.18  E-value=0.00082  Score=40.13  Aligned_cols=56  Identities=13%  Similarity=0.213  Sum_probs=36.9

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec----------------------CCCeEEEEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV----------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~----------------------~~~~~~~~~~~~~~~  221 (232)
                      ..+..|+++.|+|.+.|+...  .+.|.|.  |+.      +.                      ..+.+.|.+++.+.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (124)
T d1yedb1          10 ELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSE   89 (124)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCC
Confidence            345679999999999887544  3778763  111      11                      122344555566679


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        90 DTAvYYCA   97 (124)
T d1yedb1          90 DSAVYFCT   97 (124)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEEec
Confidence            99999996

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0013  Score=39.40  Aligned_cols=21  Identities=14%  Similarity=0.433  Sum_probs=19.1

Q ss_pred             eEEECCCCCCCCeEEEEEeEe
Q psy15206        127 TLQIPRITKEDRGAYYCVAQN  147 (232)
Q Consensus       127 ~l~i~~~~~~~~g~y~C~~~~  147 (232)
                      +|.|.+++.+|+|.|.|.+..
T Consensus        78 ~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          78 TFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEESCCGGGCEEEEEEEEE
T ss_pred             EEEECCCCcccCeEEEEEEec
Confidence            699999999999999998764

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00059  Score=39.83  Aligned_cols=62  Identities=15%  Similarity=0.272  Sum_probs=40.3

Q ss_pred             cCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCc----------EEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGHPI--PTISWRRENNAILPNGQ----------TIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~----------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .+..+.|.|.+.|..+  ..+.|+++|..+.....          .....+.|.|..-.......|+|.+.+..
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEG   92 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETT
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            3557899999988533  36999999887542211          11112346665555556678999999853

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.18  E-value=0.0006  Score=40.80  Aligned_cols=57  Identities=11%  Similarity=0.134  Sum_probs=37.0

Q ss_pred             eeeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c-C----------CCeE-----------EEEEeccccC
Q psy15206        174 IGQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V-N----------DEYH-----------SISNFGTSEG  221 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~-~----------~~~~-----------~~~~~~~~~~  221 (232)
                      ..+..|++++|.|.+.|+..-  .+.|+|.  |+.+      . .          .+++           .|.+++.+.+
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~e   89 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcC
Confidence            346689999999999876433  4788764  2111      0 0          1233           4555566779


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (121)
T d1j05b_          90 DTAVYYCAP   98 (121)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEeEe
Confidence            999999963

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00023  Score=41.90  Aligned_cols=63  Identities=17%  Similarity=0.360  Sum_probs=41.1

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc-----E------EeeCCeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ-----T------IFTGSTLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~-----~------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .++.+.|.|.+.+. |. ..+.|+++|..+.....     .      ....+.|.|..-.......|+|.+.+...
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   93 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA   93 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTS
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCC
Confidence            45679999999884 43 46999999987543211     1      11123566665555556689999998543

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.17  E-value=0.00074  Score=40.20  Aligned_cols=56  Identities=11%  Similarity=0.219  Sum_probs=39.0

Q ss_pred             eeeeccCeEEEEEEeecCCCCe--EEEeeC--CEEe------c------------------------CCCeEEEEEeccc
Q psy15206        174 IGQALHHDMDLDCHIEAYPHPI--LYWAKD--GEIV------V------------------------NDEYHSISNFGTS  219 (232)
Q Consensus       174 ~~~~~g~~~~l~C~~~~~p~~~--~~W~~~--g~~~------~------------------------~~~~~~~~~~~~~  219 (232)
                      ..+..|+++.|+|.+.|+..-.  +.|.|.  |+.+      .                        ..+.+.|.+++.+
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~   89 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLR   89 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccC
Confidence            3567899999999998875443  678773  2111      0                        1234557777788


Q ss_pred             cCCceEEEEe
Q psy15206        220 EGTTGSLQCK  229 (232)
Q Consensus       220 ~~d~g~Y~C~  229 (232)
                      .+|++.|.|.
T Consensus        90 ~eDTAvYYCA   99 (121)
T d1nfdf1          90 VDDTAIYYCT   99 (121)
T ss_dssp             GGGCEECEEE
T ss_pred             CCcceEEEEe
Confidence            8999999995

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.14  E-value=0.00049  Score=39.82  Aligned_cols=60  Identities=23%  Similarity=0.357  Sum_probs=38.2

Q ss_pred             cCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCc----EEeeC------CeEEECCCCCCCCeEEEEEeEeCCC
Q psy15206         88 EGQSVQLECHAEGHPI--PTISWRRENNAILPNGQ----TIFTG------STLQIPRITKEDRGAYYCVAQNGIG  150 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~----~~~~~------~~l~i~~~~~~~~g~y~C~~~~~~~  150 (232)
                      .++.+.|.|.+.|..+  ..++|+++|..+.....    ....+      +.|.+   ...+...|+|.+.+...
T Consensus        16 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~~ytC~V~H~sl   87 (98)
T d1hdmb1          16 TREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGDTYTCVVEHIGA   87 (98)
T ss_dssp             SSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTCCEEEEEECTTS
T ss_pred             CCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCCEEEEEEEeCCC
Confidence            4678999999999533  46999999987642211    11112      23443   34455579999998643

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.14  E-value=0.0011  Score=39.47  Aligned_cols=65  Identities=26%  Similarity=0.538  Sum_probs=43.3

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeCC--eee------CC----------CCcEEee-C-----CeEEECCCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRREN--NAI------LP----------NGQTIFT-G-----STLQIPRITKED  137 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~--~~~------~~----------~~~~~~~-~-----~~l~i~~~~~~~  137 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++..  +.+      ..          ..++... +     ..|.|.+++.+|
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD   88 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD   88 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence            46678999999999987543  348898742  111      11          1122221 1     158999999999


Q ss_pred             CeEEEEEeEeC
Q psy15206        138 RGAYYCVAQNG  148 (232)
Q Consensus       138 ~g~y~C~~~~~  148 (232)
                      .+.|.|.....
T Consensus        89 tA~YYCAr~~~   99 (119)
T d1kxvc_          89 TAMYYCKPSLR   99 (119)
T ss_dssp             CEEEEEEEEES
T ss_pred             cceEeeeeccc
Confidence            99999976543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.14  E-value=0.00061  Score=40.85  Aligned_cols=56  Identities=11%  Similarity=0.164  Sum_probs=36.6

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c-----------CCCeE-----------EEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V-----------NDEYH-----------SISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~-----------~~~~~-----------~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+..-  .+.|+|.  |+.+      .           -.+++           .|.+++.+.+|
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eD   90 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVED   90 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCcc
Confidence            45679999999999886533  3788774  2111      1           01233           44455666799


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|..
T Consensus        91 TAvYYCAr   98 (125)
T d1op3h1          91 TAIYYCAR   98 (125)
T ss_dssp             CEEEEEEE
T ss_pred             ceeEeEee
Confidence            99999963

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.14  E-value=0.0012  Score=39.30  Aligned_cols=27  Identities=15%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD  201 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~  201 (232)
                      .+..|++++|+|.+.|+..-  .+.|+|.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ   39 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQ   39 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEE
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeee
Confidence            45679999999999887543  4888874

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.12  E-value=0.00089  Score=40.26  Aligned_cols=55  Identities=13%  Similarity=0.257  Sum_probs=38.8

Q ss_pred             eeeccCeEEEEEEeecCCC---CeEEEeeC--CEEec---------------------------CCCeEEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPH---PILYWAKD--GEIVV---------------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~---~~~~W~~~--g~~~~---------------------------~~~~~~~~~~~~~~~d  222 (232)
                      .+..|+++.|.|.+.|+..   -.+.|+|.  |+.+.                           ..+.+.|.+.+.+.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            3567999999999988754   24789874  32211                           1233566777778899


Q ss_pred             ceEEEEe
Q psy15206        223 TGSLQCK  229 (232)
Q Consensus       223 ~g~Y~C~  229 (232)
                      ++.|.|.
T Consensus        91 tAvYyCA   97 (127)
T d3cx5j1          91 TATYYCA   97 (127)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEee
Confidence            9999996

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0033  Score=34.65  Aligned_cols=61  Identities=21%  Similarity=0.419  Sum_probs=44.0

Q ss_pred             eecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCC---cEEeeCCeEEECCCCC-CCCeEEEEEeEeC
Q psy15206         86 AKEGQSVQLECHAEGHPIPTISWRRENNAILPNG---QTIFTGSTLQIPRITK-EDRGAYYCVAQNG  148 (232)
Q Consensus        86 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~-~~~g~y~C~~~~~  148 (232)
                      -..|.+|.|+|..  .....+.|.+++..+....   ........|.+..... +++|.|.|.+...
T Consensus         7 sISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~~   71 (91)
T d1xiwa_           7 SISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS   71 (91)
T ss_dssp             EEETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETTS
T ss_pred             EEeCCEEEEECCC--CCCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCCC
Confidence            3468999999974  2445799999998775432   2334456788888766 7899999998653

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.11  E-value=0.00095  Score=40.05  Aligned_cols=55  Identities=9%  Similarity=0.209  Sum_probs=36.4

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-C----------CCe-----------EEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-N----------DEY-----------HSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-~----------~~~-----------~~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+..-  .+.|+|.  |+.      +. .          .++           +.|.+++.+.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eD   90 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAED   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCc
Confidence            45679999999999887543  3788774  211      11 0          123           345555666799


Q ss_pred             ceEEEEe
Q psy15206        223 TGSLQCK  229 (232)
Q Consensus       223 ~g~Y~C~  229 (232)
                      ++.|.|.
T Consensus        91 tavYYCA   97 (126)
T d1dfbh1          91 MALYYCV   97 (126)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEEE
Confidence            9999995

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.11  E-value=0.0013  Score=38.01  Aligned_cols=60  Identities=17%  Similarity=0.158  Sum_probs=37.8

Q ss_pred             ecCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCc----EEee------CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         87 KEGQSVQLECHAEGHPI--PTISWRRENNAILPNGQ----TIFT------GSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        87 ~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~----~~~~------~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ..++...|.|.+.|..+  ..++|.++|..+.....    ....      .+.|.+..   .+...|+|.+.+..
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWG   88 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence            35678899999999543  36999999987643211    1111      12344443   34457999999853

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.11  E-value=0.0019  Score=38.17  Aligned_cols=64  Identities=28%  Similarity=0.582  Sum_probs=42.4

Q ss_pred             ceEeecCCcEEEEeeeccCCC--CeEEEEeC--Cee------eCC-C----------CcEEee----C--CeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNA------ILP-N----------GQTIFT----G--STLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~~-~----------~~~~~~----~--~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|.+.|...  ..+.|++.  |+.      +.. .          .++.+.    .  ..|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~   88 (117)
T d1jpth1           9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence            356778999999999988553  35888874  221      111 1          112111    1  2588899999


Q ss_pred             CCCeEEEEEeE
Q psy15206        136 EDRGAYYCVAQ  146 (232)
Q Consensus       136 ~~~g~y~C~~~  146 (232)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jpth1          89 EDTAVYYCARD   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEeec
Confidence            99999999754

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.10  E-value=0.0018  Score=38.10  Aligned_cols=67  Identities=27%  Similarity=0.605  Sum_probs=43.9

Q ss_pred             CCCceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------C-CC----------CcEEee--C----CeEEECC
Q psy15206         80 SPQLSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------L-PN----------GQTIFT--G----STLQIPR  132 (232)
Q Consensus        80 ~~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~-~~----------~~~~~~--~----~~l~i~~  132 (232)
                      .+....+.+|+++.|.|.+.|...  ..+.|++.  |+.+      . ..          .++...  .    ..|.|.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s   85 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence            344567778999999999988543  34788773  2211      1 11          122221  1    2588899


Q ss_pred             CCCCCCeEEEEEeE
Q psy15206        133 ITKEDRGAYYCVAQ  146 (232)
Q Consensus       133 ~~~~~~g~y~C~~~  146 (232)
                      ++.+|.+.|.|.-.
T Consensus        86 L~~eDtAvYYCAr~   99 (116)
T d1mjuh1          86 LTSDDSAVYYCANK   99 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCceEEEEccc
Confidence            99999999999743

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.09  E-value=0.0013  Score=38.30  Aligned_cols=60  Identities=20%  Similarity=0.351  Sum_probs=38.4

Q ss_pred             ecCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCcEE---eeC------CeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         87 KEGQSVQLECHAEGHPI--PTISWRRENNAILPNGQTI---FTG------STLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        87 ~~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~~~---~~~------~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ..|+...|.|.+.|..+  ..+.|.++|..........   ..+      +.|.+.   .++...|+|.+.+..
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFT---PEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEEC---CCTTCCEEEEEEETT
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEe---cCCCCEEEEEEEeCC
Confidence            35778899999999443  3699999998754322211   112      234443   334457999999864

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.09  E-value=0.0008  Score=40.18  Aligned_cols=56  Identities=13%  Similarity=0.224  Sum_probs=36.7

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec----------------------CCCeEEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV----------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~----------------------~~~~~~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+..-  .+.|.|.  |+.      +.                      ..+.+.|.+++.+.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eD   90 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccccc
Confidence            45679999999999886433  3778763  111      11                      1123455556667799


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|..
T Consensus        91 tAvYYCAr   98 (121)
T d1ol0a_          91 TAVYYCAR   98 (121)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEEE
Confidence            99999953

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.09  E-value=0.00071  Score=38.53  Aligned_cols=58  Identities=21%  Similarity=0.235  Sum_probs=36.5

Q ss_pred             CCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCcEE--------eeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         89 GQSVQLECHAEGH-PI-PTISWRRENNAILPNGQTI--------FTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        89 g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +..+.|.|.+.|. |. ..++|.++|..........        ...+.|.+.   ..+...|+|.+.+..
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~s   82 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHEG   82 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeCC
Confidence            4578999999994 43 3699999997753221111        111234443   344568999999864

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00045  Score=40.44  Aligned_cols=35  Identities=9%  Similarity=0.248  Sum_probs=24.2

Q ss_pred             cceeeeeccCeEEEEEEeecCCCC----eEEEeeCCEEe
Q psy15206        171 STRIGQALHHDMDLDCHIEAYPHP----ILYWAKDGEIV  205 (232)
Q Consensus       171 ~~~~~~~~g~~~~l~C~~~~~p~~----~~~W~~~g~~~  205 (232)
                      |.......++.++|.|.+.|+.+.    .+.|++++...
T Consensus         8 Ps~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~   46 (103)
T d1fp5a1           8 PSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKP   46 (103)
T ss_dssp             CCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCC
T ss_pred             cCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCcee
Confidence            433345567889999999986433    57788877544

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.08  E-value=0.00092  Score=40.23  Aligned_cols=55  Identities=15%  Similarity=0.305  Sum_probs=36.2

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec----------------------CCCeEEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV----------------------NDEYHSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~----------------------~~~~~~~~~~~~~~~d  222 (232)
                      .+..|+++.|.|.+.|+..-  .+.|.|.  |+.      +.                      ..+.+.|.+++.+.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eD   90 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecc
Confidence            45679999999999886433  3778764  111      11                      1122445555667799


Q ss_pred             ceEEEEe
Q psy15206        223 TGSLQCK  229 (232)
Q Consensus       223 ~g~Y~C~  229 (232)
                      ++.|.|.
T Consensus        91 TA~YYCA   97 (127)
T d2fb4h1          91 TGVYFCA   97 (127)
T ss_dssp             CEEEEEE
T ss_pred             eeEEEEE
Confidence            9999996

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.003  Score=37.29  Aligned_cols=63  Identities=21%  Similarity=0.566  Sum_probs=42.1

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CC----------CCcEEee----C--CeEEECCCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LP----------NGQTIFT----G--STLQIPRITKED  137 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~----------~~~~~~~----~--~~l~i~~~~~~~  137 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.+      ..          ..++...    .  ..|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD   89 (117)
T d1c5db1          10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (117)
T ss_dssp             SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence            45678999999999988543  35888874  2221      11          1122221    1  258999999999


Q ss_pred             CeEEEEEeE
Q psy15206        138 RGAYYCVAQ  146 (232)
Q Consensus       138 ~g~y~C~~~  146 (232)
                      .+.|.|...
T Consensus        90 tAvYYCAr~   98 (117)
T d1c5db1          90 TAIYFCTRE   98 (117)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEecc
Confidence            999999644

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.07  E-value=0.0027  Score=37.55  Aligned_cols=65  Identities=26%  Similarity=0.564  Sum_probs=42.2

Q ss_pred             CCceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------C-C----------CCcEEee----C--CeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------L-P----------NGQTIFT----G--STLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~-~----------~~~~~~~----~--~~l~i~~~  133 (232)
                      +....+.+|+++.|.|.+.|...  ..+.|++.  |+.+      . .          ..++...    .  ..|.|.++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L   86 (117)
T d1mfah1           7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSL   86 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeeccc
Confidence            34456778999999999987543  34778763  3221      0 0          1122111    1  25889999


Q ss_pred             CCCCCeEEEEEe
Q psy15206        134 TKEDRGAYYCVA  145 (232)
Q Consensus       134 ~~~~~g~y~C~~  145 (232)
                      +.+|.+.|.|.-
T Consensus        87 ~~eDtAvYYCAr   98 (117)
T d1mfah1          87 TSEDSAVYYCTR   98 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCcceEEEEec
Confidence            999999999974

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.06  E-value=0.002  Score=38.09  Aligned_cols=63  Identities=25%  Similarity=0.615  Sum_probs=41.6

Q ss_pred             ceEeecCCcEEEEeeeccCCC--CeEEEEeC--Cee------eCC-C----------CcEEee----C--CeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNA------ILP-N----------GQTIFT----G--STLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~~-~----------~~~~~~----~--~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|.+.|...  ..+.|++.  |+.      +.. .          .++...    .  -.|.|.+++.
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~   88 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence            356778999999999987543  35888774  221      111 1          112111    1  1588999999


Q ss_pred             CCCeEEEEEe
Q psy15206        136 EDRGAYYCVA  145 (232)
Q Consensus       136 ~~~g~y~C~~  145 (232)
                      +|.+.|.|..
T Consensus        89 eDtAvYYCAr   98 (118)
T d1nlbh1          89 EDTATYFCAR   98 (118)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEee
Confidence            9999999953

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.06  E-value=0.00054  Score=39.67  Aligned_cols=62  Identities=15%  Similarity=0.145  Sum_probs=36.2

Q ss_pred             cCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCc----EEeeCCe---EEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGHPI--PTISWRRENNAILPNGQ----TIFTGST---LQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~----~~~~~~~---l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .++...|.|.+.|..+  ..++|+++|........    ....+++   .....+...+...|+|.+.+..
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            3556689999999433  36999999887643211    1111221   2223445666778999999864

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.06  E-value=0.00082  Score=40.56  Aligned_cols=56  Identities=9%  Similarity=0.210  Sum_probs=36.3

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-C----------CCeE-----------EEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-N----------DEYH-----------SISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-~----------~~~~-----------~~~~~~~~~~d  222 (232)
                      .+..|++++|+|.+.|+...  .+.|.|.  |+.      +. .          .+++           .|.+++.+.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (130)
T d1rzga1          11 VKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSED   90 (130)
T ss_dssp             EECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCc
Confidence            45679999999999877543  4788764  211      11 0          1233           34455566689


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|.-
T Consensus        91 tA~YYCAr   98 (130)
T d1rzga1          91 TAVFYCAS   98 (130)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEEE
Confidence            99999963

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00076  Score=39.60  Aligned_cols=31  Identities=19%  Similarity=0.365  Sum_probs=23.6

Q ss_pred             eeccCeEEEEEEeecCCC----CeEEEeeCCEEec
Q psy15206        176 QALHHDMDLDCHIEAYPH----PILYWAKDGEIVV  206 (232)
Q Consensus       176 ~~~g~~~~l~C~~~~~p~----~~~~W~~~g~~~~  206 (232)
                      ...++.++|.|.+.|+.+    ..+.|.++|..+.
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~   49 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH   49 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEEC
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECC
Confidence            446788999999988643    3578999987654

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.05  E-value=0.00088  Score=40.05  Aligned_cols=55  Identities=9%  Similarity=0.132  Sum_probs=36.1

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-----------CCCeE-----------EEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-----------NDEYH-----------SISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-----------~~~~~-----------~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+..-  .+.|+|.  |+.      +.           -.+++           .|.+++.+.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eD   90 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSED   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccC
Confidence            35679999999999887543  3788874  111      11           01234           44445566689


Q ss_pred             ceEEEEe
Q psy15206        223 TGSLQCK  229 (232)
Q Consensus       223 ~g~Y~C~  229 (232)
                      ++.|.|.
T Consensus        91 TAvYYCA   97 (122)
T d1bz7b1          91 TAIYYCT   97 (122)
T ss_dssp             CEEEEEE
T ss_pred             ceEEEee
Confidence            9999995

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.05  E-value=0.00057  Score=41.13  Aligned_cols=56  Identities=11%  Similarity=0.203  Sum_probs=36.3

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-C----------CCe-----------EEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-N----------DEY-----------HSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-~----------~~~-----------~~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+...  .+.|.|.  |+.      +. .          .++           +.|.+++.+.+|
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eD   89 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPED   89 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCccc
Confidence            45679999999999886544  4788874  111      11 0          123           345555667799


Q ss_pred             ceEEEEec
Q psy15206        223 TGSLQCKV  230 (232)
Q Consensus       223 ~g~Y~C~~  230 (232)
                      ++.|.|..
T Consensus        90 TAvYYCAr   97 (126)
T d1rjca1          90 TAMYYCAA   97 (126)
T ss_dssp             CEEEEEEE
T ss_pred             CceeEEEe
Confidence            99999964

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.05  E-value=0.003  Score=37.28  Aligned_cols=63  Identities=17%  Similarity=0.516  Sum_probs=41.8

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CCC----------CcEEee----C--CeEEECCCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LPN----------GQTIFT----G--STLQIPRITKED  137 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~~----------~~~~~~----~--~~l~i~~~~~~~  137 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.+      ...          .++...    .  -.|.|.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD   89 (116)
T d1a2yb_          10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence            45678999999999987543  35888874  2211      111          111111    1  158999999999


Q ss_pred             CeEEEEEeE
Q psy15206        138 RGAYYCVAQ  146 (232)
Q Consensus       138 ~g~y~C~~~  146 (232)
                      .+.|.|.-.
T Consensus        90 TAvYYCAr~   98 (116)
T d1a2yb_          90 TARYYCARE   98 (116)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEEe
Confidence            999999854

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0018  Score=36.99  Aligned_cols=67  Identities=21%  Similarity=0.440  Sum_probs=47.8

Q ss_pred             CCceEeecCCcEEEEeeeccCCCCeEE-EEeCCeeeCCCC-cEEe-eCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIPTIS-WRRENNAILPNG-QTIF-TGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~~~~-W~~~~~~~~~~~-~~~~-~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      +..+.+.+|+.+.+.|.+. .|...+. |...+..+...+ .... ....+.|.++...+.|.|.|.+...
T Consensus        12 p~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          12 PEIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             CEEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC
Confidence            3446677899999999986 4555544 555666655433 2332 3456999999999999999999764

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.04  E-value=9.1e-05  Score=44.21  Aligned_cols=54  Identities=17%  Similarity=0.282  Sum_probs=32.7

Q ss_pred             ccCeEEEEEEeecCCCC--eEEEeeCCEE--------ecCCCeE-EEEEeccccCC---ceEEEEecC
Q psy15206        178 LHHDMDLDCHIEAYPHP--ILYWAKDGEI--------VVNDEYH-SISNFGTSEGT---TGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~--~~~W~~~g~~--------~~~~~~~-~~~~~~~~~~d---~g~Y~C~~~  231 (232)
                      .++.++|.|.+.|+.+.  .|.|.++|..        ...++.| ..+...+..++   .-.|+|+|.
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~   93 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVM   93 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTEEEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEE
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCcEEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEE
Confidence            46678999999997544  5999988631        1122333 33333333333   346999874

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.002  Score=34.89  Aligned_cols=51  Identities=20%  Similarity=0.330  Sum_probs=32.9

Q ss_pred             ccCeEEEEEEeecCCCCeEEEeeCCEEecC--CCeEEEEEeccccCCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEAYPHPILYWAKDGEIVVN--DEYHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~--~~~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+|.|.|..   ....|.|+++|..+..  ...-.+.+-.....-.|.|.|..+
T Consensus        16 ~dg~V~L~Cn~---~~k~i~W~kdg~~i~~~~~~~ktlnLG~~~~DPRG~Y~C~~~   68 (81)
T d1sy6a1          16 EDGSVLLTCDA---EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGS   68 (81)
T ss_dssp             SSSEEEEEECS---CSSEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESS
T ss_pred             cCCeEEEEeCC---CCcEEEEecCCeEeecccCCcceeecCCcccCCCcceEcCCC
Confidence            45678999953   3348999999986542  222333333334466799999753

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.03  E-value=0.0028  Score=37.95  Aligned_cols=65  Identities=31%  Similarity=0.646  Sum_probs=42.7

Q ss_pred             CCceEeecCCcEEEEeeeccCCCC--eEEEEeC--Cee------eCC-C----------CcEEee----C--CeEEECCC
Q psy15206         81 PQLSVAKEGQSVQLECHAEGHPIP--TISWRRE--NNA------ILP-N----------GQTIFT----G--STLQIPRI  133 (232)
Q Consensus        81 ~~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~------~~~-~----------~~~~~~----~--~~l~i~~~  133 (232)
                      +....+.+|+++.|.|.+.|....  .+.|++.  |+.      +.. .          .++.+.    .  ..|.|.++
T Consensus         7 sg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L   86 (127)
T d1n0xh1           7 SGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSL   86 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEcc
Confidence            334567789999999999885443  4788873  221      111 1          112111    1  25888999


Q ss_pred             CCCCCeEEEEEe
Q psy15206        134 TKEDRGAYYCVA  145 (232)
Q Consensus       134 ~~~~~g~y~C~~  145 (232)
                      +.+|.+.|.|.-
T Consensus        87 ~~eDtAvYYCAR   98 (127)
T d1n0xh1          87 RSADTAVYYCAR   98 (127)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CCCCceEEEEEe
Confidence            999999999974

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.03  E-value=0.0011  Score=39.80  Aligned_cols=55  Identities=11%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             eccCeEEEEEEeecCCC----CeEEEeeCCEEecC----------CCeEEEEE-ecccc---CCceEEEEecC
Q psy15206        177 ALHHDMDLDCHIEAYPH----PILYWAKDGEIVVN----------DEYHSISN-FGTSE---GTTGSLQCKVP  231 (232)
Q Consensus       177 ~~g~~~~l~C~~~~~p~----~~~~W~~~g~~~~~----------~~~~~~~~-~~~~~---~d~g~Y~C~~~  231 (232)
                      ..++.++|.|.+.|+.+    ..+.|+++|..+..          ++.|.... ..+..   .....|+|+|.
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~  102 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVN  102 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEE
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEE
Confidence            45788999999988633    36899999987642          22333222 22222   33457999984

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.03  E-value=0.00043  Score=40.47  Aligned_cols=62  Identities=19%  Similarity=0.356  Sum_probs=39.0

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCC---------CcEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPN---------GQTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .+..+.|.|.+.|. |. ..+.|.++|......         .......+.|.+..-.......|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999884 43 469999998764211         0111122355555544444557999999854

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.02  E-value=0.00093  Score=39.52  Aligned_cols=64  Identities=28%  Similarity=0.559  Sum_probs=42.2

Q ss_pred             ceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------C-C----------CCcEEee-C-----CeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------L-P----------NGQTIFT-G-----STLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~-~----------~~~~~~~-~-----~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|.+.|...  ..+.|++.  |+.+      . .          ..++.+. +     ..|.|.+++.
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~   88 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS   88 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence            345678999999999988543  35888873  2211      0 0          1122221 1     2588999999


Q ss_pred             CCCeEEEEEeE
Q psy15206        136 EDRGAYYCVAQ  146 (232)
Q Consensus       136 ~~~g~y~C~~~  146 (232)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (117)
T d1jnhb1          89 EDSAVYSCSRG   99 (117)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEEeec
Confidence            99999999753

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.01  E-value=0.0045  Score=36.60  Aligned_cols=66  Identities=27%  Similarity=0.568  Sum_probs=43.5

Q ss_pred             ceEeecCCcEEEEeeeccCCCC--eEEEEeC--Ceee------CC-----------CCcEEee-C-----CeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIP--TISWRRE--NNAI------LP-----------NGQTIFT-G-----STLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~~------~~-----------~~~~~~~-~-----~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|.+.|....  .+.|++.  |+.+      ..           ..++.+. +     -.|.|.+++.
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   88 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence            3467789999999999885433  4788863  2211      11           1122221 1     1589999999


Q ss_pred             CCCeEEEEEeEeC
Q psy15206        136 EDRGAYYCVAQNG  148 (232)
Q Consensus       136 ~~~g~y~C~~~~~  148 (232)
                      +|.+.|.|.....
T Consensus        89 eDtAvYYCAr~~~  101 (118)
T d2fbjh1          89 EDTALYYCARLHY  101 (118)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             CcceEEEeeEecC
Confidence            9999999986543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.01  E-value=0.0016  Score=37.85  Aligned_cols=62  Identities=24%  Similarity=0.551  Sum_probs=39.4

Q ss_pred             EeecCCcEEEEeeeccCC--CCeEEEEeCC--eee------CCC----------CcEEee-C-----CeEEECCCCCCCC
Q psy15206         85 VAKEGQSVQLECHAEGHP--IPTISWRREN--NAI------LPN----------GQTIFT-G-----STLQIPRITKEDR  138 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~--~~~~~W~~~~--~~~------~~~----------~~~~~~-~-----~~l~i~~~~~~~~  138 (232)
                      .+.+|+++.|.|.+.|..  ...+.|++..  +.+      ...          .++... +     ..|.|.+++.+|.
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            356899999999998743  3357888742  211      111          122221 1     2589999999999


Q ss_pred             eEEEEEeE
Q psy15206        139 GAYYCVAQ  146 (232)
Q Consensus       139 g~y~C~~~  146 (232)
                      +.|.|...
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999753

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.01  E-value=0.0014  Score=38.79  Aligned_cols=65  Identities=26%  Similarity=0.569  Sum_probs=43.0

Q ss_pred             CceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------C-CC----------CcEEee----C--CeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------L-PN----------GQTIFT----G--STLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~-~~----------~~~~~~----~--~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|...  ..+.|++.  |+.+      . ..          .++...    .  ..|.|.+++
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~   86 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLT   86 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccC
Confidence            3456778999999999988543  35889874  2211      1 11          122111    1  158999999


Q ss_pred             CCCCeEEEEEeE
Q psy15206        135 KEDRGAYYCVAQ  146 (232)
Q Consensus       135 ~~~~g~y~C~~~  146 (232)
                      .+|.+.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (117)
T d1um5h1          87 SEDSAVYYCARS   98 (117)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999754

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.01  E-value=0.0014  Score=38.81  Aligned_cols=65  Identities=25%  Similarity=0.635  Sum_probs=43.2

Q ss_pred             ceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CC-----------CCcEEee----C--CeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LP-----------NGQTIFT----G--STLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~-----------~~~~~~~----~--~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|.+.|...  ..+.|++.  |+.+      ..           ..++...    .  ..|.|.+++.
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~   88 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS   88 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence            356778999999999987543  34788873  2221      11           1122111    1  1589999999


Q ss_pred             CCCeEEEEEeEe
Q psy15206        136 EDRGAYYCVAQN  147 (232)
Q Consensus       136 ~~~g~y~C~~~~  147 (232)
                      +|.+.|.|....
T Consensus        89 eDtAvYYCA~~~  100 (117)
T d1iqdb1          89 DDTAVYYCAVPD  100 (117)
T ss_dssp             GGCEEEEEEECS
T ss_pred             CcceEEEEeEcC
Confidence            999999998654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.00  E-value=0.0011  Score=39.59  Aligned_cols=56  Identities=11%  Similarity=0.250  Sum_probs=36.9

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec---C----------CCe-----------EEEEEecccc
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV---N----------DEY-----------HSISNFGTSE  220 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~---~----------~~~-----------~~~~~~~~~~  220 (232)
                      .+..|+++.|+|.+.|+...  .+.|+|.  |+.      +.   .          .++           +.|.+++.+.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   90 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRA   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeecc
Confidence            45679999999999887544  3788864  211      10   0          123           3455556677


Q ss_pred             CCceEEEEec
Q psy15206        221 GTTGSLQCKV  230 (232)
Q Consensus       221 ~d~g~Y~C~~  230 (232)
                      +|++.|.|..
T Consensus        91 eDTAvYYCar  100 (122)
T d1q9rb1          91 EDSATYYCAR  100 (122)
T ss_dssp             GGCEEEEEEE
T ss_pred             CcceEEEEEe
Confidence            9999999964

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00044  Score=40.41  Aligned_cols=62  Identities=16%  Similarity=0.340  Sum_probs=39.0

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCC---------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNG---------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .++.+.|.|.+.|. |. ..+.|+++|.......         ......+.|.+..-.......|+|.+.+..
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            36679999999984 43 3699999987643210         111112345555544444457999999854

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.00  E-value=0.0016  Score=39.36  Aligned_cols=55  Identities=11%  Similarity=0.221  Sum_probs=36.2

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-----------CCCe-----------EEEEEeccccCC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-----------NDEY-----------HSISNFGTSEGT  222 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-----------~~~~-----------~~~~~~~~~~~d  222 (232)
                      .+..|+++.|+|.+.|+..-  .+.|.|.  |+.      +.           -.++           ..|.+++.+.+|
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eD   89 (133)
T d1rzfh1          10 VNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDD   89 (133)
T ss_dssp             EECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCC
Confidence            46689999999999886543  3778763  211      10           1123           444555666799


Q ss_pred             ceEEEEe
Q psy15206        223 TGSLQCK  229 (232)
Q Consensus       223 ~g~Y~C~  229 (232)
                      ++.|.|.
T Consensus        90 tA~YYCA   96 (133)
T d1rzfh1          90 TAVYYCA   96 (133)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEee
Confidence            9999995

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.99  E-value=0.00095  Score=38.95  Aligned_cols=64  Identities=25%  Similarity=0.538  Sum_probs=42.3

Q ss_pred             ceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CC-------------CCcEEee----C--CeEEECCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LP-------------NGQTIFT----G--STLQIPRI  133 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~-------------~~~~~~~----~--~~l~i~~~  133 (232)
                      ...+.+|+++.|+|.+.|...  ..+.|++.  |+.+      ..             ..++.+.    .  -.|.|.++
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL   88 (109)
T d2ck0h1           9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL   88 (109)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence            356778999999999987543  35888763  2111      10             1122221    1  25889999


Q ss_pred             CCCCCeEEEEEeE
Q psy15206        134 TKEDRGAYYCVAQ  146 (232)
Q Consensus       134 ~~~~~g~y~C~~~  146 (232)
                      +.+|.+.|.|.-.
T Consensus        89 ~~eDTAvYYCAr~  101 (109)
T d2ck0h1          89 KTEDTGIYYCVRG  101 (109)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CHhHCEEEEEEEc
Confidence            9999999999843

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00029  Score=41.40  Aligned_cols=62  Identities=21%  Similarity=0.271  Sum_probs=39.8

Q ss_pred             cCCcEEEEeeecc-CCCC-eEEEEeCCeeeCCCCcE---------EeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEG-HPIP-TISWRRENNAILPNGQT---------IFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .+..+.|.|.+.+ +|.. .+.|+++|..+......         ....+.|.|..-.......|+|.+.+..
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~   92 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQG   92 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETT
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            3557899999988 4443 59999999876432111         1112346665544444567999999863

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.97  E-value=0.00028  Score=41.84  Aligned_cols=56  Identities=13%  Similarity=0.258  Sum_probs=37.3

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEEe------c---------------------CCCeEEEEEeccccCCc
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEGTT  223 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~d~  223 (232)
                      .+..|++++|+|.+.|+..-  .+.|+|.  |+.+      .                     ..+...|.+++.+.+|+
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            35679999999999886543  4888874  2111      1                     11224455566777999


Q ss_pred             eEEEEec
Q psy15206        224 GSLQCKV  230 (232)
Q Consensus       224 g~Y~C~~  230 (232)
                      +.|.|..
T Consensus        91 AvYyCAr   97 (116)
T d1fn4b1          91 GTYYCTR   97 (116)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999953

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.96  E-value=0.0025  Score=38.16  Aligned_cols=63  Identities=25%  Similarity=0.520  Sum_probs=42.1

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeCC--ee------eCC-C----------CcEEee----C--CeEEECCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRREN--NA------ILP-N----------GQTIFT----G--STLQIPRITKE  136 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~--~~------~~~-~----------~~~~~~----~--~~l~i~~~~~~  136 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++..  +.      +.. .          .++.+.    .  -.|.|.+++.+
T Consensus         9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e   88 (124)
T d1zvya1           9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE   88 (124)
T ss_dssp             EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence            45678999999999988543  358898742  21      111 1          112111    1  25889999999


Q ss_pred             CCeEEEEEeE
Q psy15206        137 DRGAYYCVAQ  146 (232)
Q Consensus       137 ~~g~y~C~~~  146 (232)
                      |.+.|.|...
T Consensus        89 DtAvYYCAr~   98 (124)
T d1zvya1          89 DTAIYTCGAT   98 (124)
T ss_dssp             GCEEEEEEEC
T ss_pred             cceEEEEeec
Confidence            9999999764

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.95  E-value=0.00086  Score=39.71  Aligned_cols=62  Identities=27%  Similarity=0.612  Sum_probs=41.0

Q ss_pred             eEeecCCcEEEEeeeccCC--CCeEEEEeC--Ceee------C-CC----------CcEEee----C--CeEEECCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHP--IPTISWRRE--NNAI------L-PN----------GQTIFT----G--STLQIPRITKE  136 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~------~-~~----------~~~~~~----~--~~l~i~~~~~~  136 (232)
                      ..+.+|+++.|.|.+.|..  ...+.|++.  |+.+      . ..          .++...    .  ..|.|.+++.+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e   89 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE   89 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence            4577899999999988753  335888763  2221      1 11          122111    1  15899999999


Q ss_pred             CCeEEEEEe
Q psy15206        137 DRGAYYCVA  145 (232)
Q Consensus       137 ~~g~y~C~~  145 (232)
                      |.+.|.|..
T Consensus        90 DtAvYYCAr   98 (115)
T d1f3dh1          90 DSAVYYCAN   98 (115)
T ss_dssp             GCEEEEEEE
T ss_pred             CcEEEEEec
Confidence            999999964

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.95  E-value=0.0015  Score=38.97  Aligned_cols=66  Identities=29%  Similarity=0.586  Sum_probs=43.0

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeC--Ceee------C-CC----------CcEEee----C--CeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRRE--NNAI------L-PN----------GQTIFT----G--STLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~------~-~~----------~~~~~~----~--~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|..  ...+.|++.  |+.+      . ..          .++...    .  ..|.|.+++
T Consensus         8 g~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~   87 (121)
T d1j05b_           8 GAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLT   87 (121)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccC
Confidence            345677899999999987744  335888774  2211      0 01          122111    1  248899999


Q ss_pred             CCCCeEEEEEeEe
Q psy15206        135 KEDRGAYYCVAQN  147 (232)
Q Consensus       135 ~~~~g~y~C~~~~  147 (232)
                      .+|.+.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (121)
T d1j05b_          88 SEDTAVYYCAPFG  100 (121)
T ss_dssp             GGGCEEEEEEEEB
T ss_pred             cCcceEEEeEeec
Confidence            9999999997543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.95  E-value=0.0016  Score=38.91  Aligned_cols=64  Identities=22%  Similarity=0.487  Sum_probs=41.5

Q ss_pred             eEeecCCcEEEEeeeccCC----CCeEEEEeC--Ceee------C----------CCCcEEeeC------CeEEECCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHP----IPTISWRRE--NNAI------L----------PNGQTIFTG------STLQIPRITK  135 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~----~~~~~W~~~--~~~~------~----------~~~~~~~~~------~~l~i~~~~~  135 (232)
                      ..+.+|+++.|.|.+.|..    ...+.|++.  |+.+      .          ...++....      ..|.|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            3466899999999987632    235889974  2211      0          012222211      2589999999


Q ss_pred             CCCeEEEEEeEe
Q psy15206        136 EDRGAYYCVAQN  147 (232)
Q Consensus       136 ~~~g~y~C~~~~  147 (232)
                      +|.+.|.|....
T Consensus        90 eDsAvYyCAr~~  101 (120)
T d2agjh1          90 VDTATYYCARTS  101 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEeeEecC
Confidence            999999997443

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.94  E-value=0.0022  Score=37.87  Aligned_cols=64  Identities=20%  Similarity=0.517  Sum_probs=42.6

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CC----------CCcEEee--C----CeEEECCCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LP----------NGQTIFT--G----STLQIPRITKED  137 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~----------~~~~~~~--~----~~l~i~~~~~~~  137 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.+      ..          ..++...  +    ..|.|.+++.+|
T Consensus        10 ~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eD   89 (116)
T d7fabh1          10 GLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAAD   89 (116)
T ss_dssp             SEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccccccc
Confidence            45668999999999987543  35889874  2211      11          1122121  1    258999999999


Q ss_pred             CeEEEEEeEe
Q psy15206        138 RGAYYCVAQN  147 (232)
Q Consensus       138 ~g~y~C~~~~  147 (232)
                      .+.|.|....
T Consensus        90 tAvYyCAr~~   99 (116)
T d7fabh1          90 TAVYYCARNL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeeeec
Confidence            9999998644

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.002  Score=37.45  Aligned_cols=64  Identities=16%  Similarity=0.367  Sum_probs=40.8

Q ss_pred             cCCcEEEEeeeccC-CCC--eEEEEeCCeeeCC--------CCcEEeeCCeEEECCCCCCCCeEEEEEeEeCCCC
Q psy15206         88 EGQSVQLECHAEGH-PIP--TISWRRENNAILP--------NGQTIFTGSTLQIPRITKEDRGAYYCVAQNGIGR  151 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~~--~~~W~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~  151 (232)
                      .++.+.|.|.+.|. |..  .+.|.+++.....        ........+.|.|..-.......|+|.+.+....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            46789999999994 442  4678776654311        1111122346777777766667899999986443

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.92  E-value=0.0015  Score=38.76  Aligned_cols=65  Identities=28%  Similarity=0.584  Sum_probs=42.6

Q ss_pred             CceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CC-C----------CcEEee----C--CeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LP-N----------GQTIFT----G--STLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~-~----------~~~~~~----~--~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|...  ..+.|++.  |+.+      .. .          .++...    .  ..|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~   87 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLT   87 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeeccc
Confidence            3355678999999999988543  35889874  2221      11 1          122111    1  258899999


Q ss_pred             CCCCeEEEEEeE
Q psy15206        135 KEDRGAYYCVAQ  146 (232)
Q Consensus       135 ~~~~g~y~C~~~  146 (232)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAr~   99 (119)
T d1eapb1          88 SEDSAVYFCKRS   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEEEe
Confidence            999999999643

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.92  E-value=0.0016  Score=38.61  Aligned_cols=64  Identities=25%  Similarity=0.622  Sum_probs=42.0

Q ss_pred             CceEeecCCcEEEEeeeccCCC--CeEEEEeC--Cee------eCC-C----------CcEEee----C--CeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNA------ILP-N----------GQTIFT----G--STLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~~-~----------~~~~~~----~--~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|...  ..+.|++.  |+.      +.. .          .++...    .  ..|.|.+++
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~   87 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccc
Confidence            3456778999999999987553  35888874  221      111 1          111111    1  158899999


Q ss_pred             CCCCeEEEEEe
Q psy15206        135 KEDRGAYYCVA  145 (232)
Q Consensus       135 ~~~~g~y~C~~  145 (232)
                      .+|.+.|.|..
T Consensus        88 ~eDTAvYYCAr   98 (118)
T d2jelh1          88 SEDSAIYYCAR   98 (118)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cCcceeeeEEE
Confidence            99999999954

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.92  E-value=0.0046  Score=36.66  Aligned_cols=64  Identities=28%  Similarity=0.588  Sum_probs=42.4

Q ss_pred             ceEeecCCcEEEEeeeccCCC--CeEEEEeCC--eee------C-C----------CCcEEee----C--CeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPI--PTISWRREN--NAI------L-P----------NGQTIFT----G--STLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~--~~~------~-~----------~~~~~~~----~--~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|.+.|...  ..+.|++..  +.+      . .          ..++.+.    .  ..|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~   88 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS   88 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence            346678999999999988553  358887742  111      1 1          1122211    1  2588999999


Q ss_pred             CCCeEEEEEeE
Q psy15206        136 EDRGAYYCVAQ  146 (232)
Q Consensus       136 ~~~g~y~C~~~  146 (232)
                      +|.+.|.|...
T Consensus        89 eDTAvYYCAr~   99 (119)
T d1rz7h1          89 EDTAVYYCAAD   99 (119)
T ss_dssp             GGCEEEEEEEC
T ss_pred             ccceEEEEeec
Confidence            99999999754

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.00079  Score=39.27  Aligned_cols=54  Identities=22%  Similarity=0.401  Sum_probs=33.0

Q ss_pred             ccCeEEEEEEeecC-CCC--eEEEeeCCEEec---------CCCeEEEEE----eccccCCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEAY-PHP--ILYWAKDGEIVV---------NDEYHSISN----FGTSEGTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~~-p~~--~~~W~~~g~~~~---------~~~~~~~~~----~~~~~~d~g~Y~C~~~  231 (232)
                      .++.+.|.|.+.|+ |..  .+.|.+||..+.         .++.|....    ..........|+|+|.
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~   87 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQ   87 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEE
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEE
Confidence            46789999999996 443  478998875432         333443322    2222233457999983

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.91  E-value=0.0011  Score=40.04  Aligned_cols=56  Identities=9%  Similarity=0.155  Sum_probs=37.5

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeCC--EE---e---c---------------------------CCCeEEEEEec
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKDG--EI---V---V---------------------------NDEYHSISNFG  217 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~g--~~---~---~---------------------------~~~~~~~~~~~  217 (232)
                      .+..|++++|+|.+.|+...  .+.|+|..  +.   +   .                           ..+.+.|.+++
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~   90 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNS   90 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeec
Confidence            45679999999999887543  47888741  10   1   0                           11234455666


Q ss_pred             cccCCceEEEEec
Q psy15206        218 TSEGTTGSLQCKV  230 (232)
Q Consensus       218 ~~~~d~g~Y~C~~  230 (232)
                      .+.+|++.|.|..
T Consensus        91 l~~eDtAvYYCAr  103 (127)
T d1i3ua_          91 LKPEDTAVYYCAA  103 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccccceeEEEEEE
Confidence            7779999999964

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.90  E-value=0.0014  Score=39.04  Aligned_cols=65  Identities=23%  Similarity=0.599  Sum_probs=42.5

Q ss_pred             ceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------C-C----------CCcEEee----C--CeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------L-P----------NGQTIFT----G--STLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~-~----------~~~~~~~----~--~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|.+.|...  ..+.|++.  |+.+      . .          ..++...    .  -.|.|.+++.
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~   88 (120)
T d1pg7x1           9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS   88 (120)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence            345678999999999887543  35888874  2221      1 0          1122111    1  1588999999


Q ss_pred             CCCeEEEEEeEe
Q psy15206        136 EDRGAYYCVAQN  147 (232)
Q Consensus       136 ~~~g~y~C~~~~  147 (232)
                      +|.+.|.|....
T Consensus        89 eDtA~YYCAr~~  100 (120)
T d1pg7x1          89 NDSAVYYCARED  100 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CcceEEEeeecC
Confidence            999999998653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.90  E-value=0.0046  Score=36.54  Aligned_cols=64  Identities=31%  Similarity=0.595  Sum_probs=42.1

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CCC----------CcEEe-e---C--CeEEECCCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LPN----------GQTIF-T---G--STLQIPRITKED  137 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~~----------~~~~~-~---~--~~l~i~~~~~~~  137 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.+      ...          .++.+ .   .  ..|.|.+++.+|
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD   89 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED   89 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence            45678999999999988543  35888874  2211      111          11111 1   1  158899999999


Q ss_pred             CeEEEEEeEe
Q psy15206        138 RGAYYCVAQN  147 (232)
Q Consensus       138 ~g~y~C~~~~  147 (232)
                      .+.|.|....
T Consensus        90 tA~YyCAr~~   99 (118)
T d1lo4h1          90 TAIYYCARGT   99 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEecccC
Confidence            9999997543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.0015  Score=38.34  Aligned_cols=62  Identities=18%  Similarity=0.307  Sum_probs=39.5

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc-----------EEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ-----------TIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~-----------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .+..+.|.|.+.|. |. ..+.|.++|..+.....           .....+.|.|..-.......|+|.+.+..
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35678999999884 43 36999999877543211           11112345555554444568999999854

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.88  E-value=0.00098  Score=38.93  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=22.1

Q ss_pred             ccCeEEEEEEeecCCC----CeEEEeeCCEEec
Q psy15206        178 LHHDMDLDCHIEAYPH----PILYWAKDGEIVV  206 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~----~~~~W~~~g~~~~  206 (232)
                      .+.+++|.|.+.++.+    ..+.|++||..+.
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~   47 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVH   47 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEEC
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCcccc
Confidence            4667899999988533    3689999987654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.88  E-value=0.0012  Score=38.83  Aligned_cols=62  Identities=31%  Similarity=0.639  Sum_probs=41.4

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeCC--ee------eCCC-----------CcEEee--C----CeEEECCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRREN--NA------ILPN-----------GQTIFT--G----STLQIPRITKE  136 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~--~~------~~~~-----------~~~~~~--~----~~l~i~~~~~~  136 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++..  +.      +...           .++.+.  +    -.|.|.+++.+
T Consensus        10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e   89 (114)
T d1indh1          10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE   89 (114)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence            45678999999999987543  347888742  21      1111           122221  1    14899999999


Q ss_pred             CCeEEEEEe
Q psy15206        137 DRGAYYCVA  145 (232)
Q Consensus       137 ~~g~y~C~~  145 (232)
                      |.+.|.|..
T Consensus        90 DtAvYYCA~   98 (114)
T d1indh1          90 DTALYFCAS   98 (114)
T ss_dssp             GCEEEEEEC
T ss_pred             cccEEEECC
Confidence            999999974

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.88  E-value=0.0014  Score=39.85  Aligned_cols=56  Identities=13%  Similarity=0.212  Sum_probs=37.1

Q ss_pred             eeeccCeEEEEEEeecCCC----CeEEEeeC--CEEe------c---------------------CCCeEEEEEeccccC
Q psy15206        175 GQALHHDMDLDCHIEAYPH----PILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~----~~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~  221 (232)
                      .+..|++++|.|.+.|+..    ..+.|+|.  |..+      .                     ..+.+.|.+.+...+
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            4567999999999887642    24789864  1111      0                     112345666677779


Q ss_pred             CceEEEEec
Q psy15206        222 TTGSLQCKV  230 (232)
Q Consensus       222 d~g~Y~C~~  230 (232)
                      |++.|.|..
T Consensus        91 DtAvYYCAr   99 (132)
T d1tjgh1          91 DTATYFCAH   99 (132)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEEE
Confidence            999999963

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00057  Score=39.92  Aligned_cols=61  Identities=15%  Similarity=0.333  Sum_probs=38.3

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc----EE------eeCCeEEECCCCCCCCeEEEEEeEeC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ----TI------FTGSTLQIPRITKEDRGAYYCVAQNG  148 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~----~~------~~~~~l~i~~~~~~~~g~y~C~~~~~  148 (232)
                      .++.+.|.|.+.+. |. ..+.|.++|..+.....    ..      ...+.|.+..-.......|+|.+.+.
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   91 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHE   91 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEET
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            35678999999984 33 36999999987643211    11      11234555544433445799999985

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.87  E-value=0.0014  Score=39.65  Aligned_cols=55  Identities=13%  Similarity=0.218  Sum_probs=36.1

Q ss_pred             eeeccCeEEEEEEeecCCCC--eEEEeeC--CEE------ec-------------CCCe-----------EEEEEecccc
Q psy15206        175 GQALHHDMDLDCHIEAYPHP--ILYWAKD--GEI------VV-------------NDEY-----------HSISNFGTSE  220 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~--~~~W~~~--g~~------~~-------------~~~~-----------~~~~~~~~~~  220 (232)
                      .+..|++++|.|.+.|+..-  .+.|+|.  |+.      +.             -.++           +.|.+++.+.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~   90 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKT   90 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecccc
Confidence            46689999999999876543  3778764  211      10             0123           3445556667


Q ss_pred             CCceEEEEe
Q psy15206        221 GTTGSLQCK  229 (232)
Q Consensus       221 ~d~g~Y~C~  229 (232)
                      +|++.|.|.
T Consensus        91 eDTAvYYCA   99 (131)
T d3c2ah1          91 EDTAVYSCT   99 (131)
T ss_dssp             GGCEEEEEE
T ss_pred             CCceEEEEe
Confidence            999999996

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.0035  Score=36.23  Aligned_cols=61  Identities=28%  Similarity=0.564  Sum_probs=36.6

Q ss_pred             cCCcEEEEeeeccCCC--CeEEEEeCC--eee------CC-----------CCcEEee------CCeEEECCCCCCCCeE
Q psy15206         88 EGQSVQLECHAEGHPI--PTISWRREN--NAI------LP-----------NGQTIFT------GSTLQIPRITKEDRGA  140 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~--~~~~W~~~~--~~~------~~-----------~~~~~~~------~~~l~i~~~~~~~~g~  140 (232)
                      +|++++|+|.+.|...  ..+.|++..  +.+      ..           ..++...      ...|.|.+++.+|.+.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            4789999999988543  358898642  211      10           1122221      1268999999999999


Q ss_pred             EEEEeEeC
Q psy15206        141 YYCVAQNG  148 (232)
Q Consensus       141 y~C~~~~~  148 (232)
                      |.|.....
T Consensus        81 YYCAr~~~   88 (103)
T d1oari_          81 YYCARMWY   88 (103)
T ss_dssp             EEEEEEEC
T ss_pred             EEeEEECC
Confidence            99986543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.86  E-value=0.0019  Score=38.52  Aligned_cols=65  Identities=28%  Similarity=0.593  Sum_probs=43.1

Q ss_pred             CceEeecCCcEEEEeeeccCCC--CeEEEEeCC--eee------C-C----------CCcEEee----C--CeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPI--PTISWRREN--NAI------L-P----------NGQTIFT----G--STLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~--~~~------~-~----------~~~~~~~----~--~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|...  ..+.|++..  +.+      . .          ..++.+.    .  -.|.|.+++
T Consensus         9 g~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~   88 (122)
T d1vgeh1           9 GAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLR   88 (122)
T ss_dssp             CCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccC
Confidence            3456778999999999988543  348888732  211      1 1          1122111    1  158899999


Q ss_pred             CCCCeEEEEEeE
Q psy15206        135 KEDRGAYYCVAQ  146 (232)
Q Consensus       135 ~~~~g~y~C~~~  146 (232)
                      .+|.+.|.|...
T Consensus        89 ~eDtA~YYCAr~  100 (122)
T d1vgeh1          89 PEDTAVYYCARD  100 (122)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999765

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.85  E-value=0.0053  Score=34.28  Aligned_cols=55  Identities=24%  Similarity=0.567  Sum_probs=39.3

Q ss_pred             EeecCCcEEEEeeeccCCCCeEEEEeCCeeeCCCCcEEeeCCeEEECCCCC-CCCeEEEEEeE
Q psy15206         85 VAKEGQSVQLECHAEGHPIPTISWRRENNAILPNGQTIFTGSTLQIPRITK-EDRGAYYCVAQ  146 (232)
Q Consensus        85 ~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~  146 (232)
                      +-..|.+|.|.|...+.  ..+.|.+++..+....     +..|.+.+... +++|.|.|...
T Consensus        10 VSISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~-----~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          10 VSISGTSVELTCPLDSD--ENLKWEKNGQELPQKH-----DKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EEEETTEEEEECSSCCC--TTCEEEETTEEECSCC-----CSEEEEESCCTTTSCEEEEEECS
T ss_pred             EEEeCCEEEEECCCCCC--CceEEeeccccCCCCC-----CcEEEEccccccccCcceEEecC
Confidence            34469999999986542  4699999988765432     22466666544 79999999744

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.84  E-value=0.0012  Score=39.48  Aligned_cols=55  Identities=11%  Similarity=0.249  Sum_probs=35.8

Q ss_pred             eeeccCeEEEEEEeecCCCC----eEEEeeC--CEEe------c---------------------CCCeEEEEEeccccC
Q psy15206        175 GQALHHDMDLDCHIEAYPHP----ILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~~----~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~  221 (232)
                      .+..|++++|+|.+.|+...    .+.|+|.  |..+      .                     ..+.+.|.+++.+.+
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            35679999999998875422    3679864  2111      0                     012244566667779


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        91 DsAvYyCA   98 (123)
T d1r0ah1          91 DTAIYYCA   98 (123)
T ss_dssp             GCEEEEEE
T ss_pred             cceEEeec
Confidence            99999996

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.84  E-value=0.0022  Score=38.17  Aligned_cols=63  Identities=27%  Similarity=0.518  Sum_probs=41.6

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeCC--eee------C-C----------CCcEEeeC------CeEEECCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRREN--NAI------L-P----------NGQTIFTG------STLQIPRITKE  136 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~~--~~~------~-~----------~~~~~~~~------~~l~i~~~~~~  136 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++..  +.+      . .          ..++.+..      -.|.|.+++.+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            45678999999999987443  357888742  211      0 0          11222221      15889999999


Q ss_pred             CCeEEEEEeE
Q psy15206        137 DRGAYYCVAQ  146 (232)
Q Consensus       137 ~~g~y~C~~~  146 (232)
                      |.+.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999854

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.82  E-value=0.0018  Score=38.89  Aligned_cols=66  Identities=26%  Similarity=0.563  Sum_probs=42.8

Q ss_pred             CceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------C-C----------CCcEEee----C--CeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------L-P----------NGQTIFT----G--STLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~-~----------~~~~~~~----~--~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|...  ..+.|++.  |+.+      . .          ..++...    .  -.|.|.+++
T Consensus         8 g~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~   87 (125)
T d1rihh1           8 GNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLT   87 (125)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccC
Confidence            3456778999999999987543  34778763  2211      0 1          1122111    1  148889999


Q ss_pred             CCCCeEEEEEeEe
Q psy15206        135 KEDRGAYYCVAQN  147 (232)
Q Consensus       135 ~~~~g~y~C~~~~  147 (232)
                      .+|.+.|.|....
T Consensus        88 ~eDtAvYYCAR~~  100 (125)
T d1rihh1          88 SEDSAVYYCARES  100 (125)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccceEEEEeeeC
Confidence            9999999998543

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.82  E-value=0.0023  Score=38.55  Aligned_cols=65  Identities=29%  Similarity=0.651  Sum_probs=42.4

Q ss_pred             CceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CCC-----------CcEEee----CC--eEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LPN-----------GQTIFT----GS--TLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~~-----------~~~~~~----~~--~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|...  ..+.|++.  |+.+      ...           .++.+.    .+  .|.|.+++
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~   87 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLR   87 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecC
Confidence            3356778999999999987543  35888874  2211      111           111111    11  48889999


Q ss_pred             CCCCeEEEEEeE
Q psy15206        135 KEDRGAYYCVAQ  146 (232)
Q Consensus       135 ~~~~g~y~C~~~  146 (232)
                      .+|.+.|.|...
T Consensus        88 ~eDtA~YYCAr~   99 (130)
T d1rzga1          88 SEDTAVFYCASP   99 (130)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCccEEEEEEEe
Confidence            999999999853

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.81  E-value=0.0022  Score=37.99  Aligned_cols=66  Identities=26%  Similarity=0.556  Sum_probs=42.6

Q ss_pred             CceEeecCCcEEEEeeeccCC--CCeEEEEeC--Ceee------C-CC----------CcEEee----C--CeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHP--IPTISWRRE--NNAI------L-PN----------GQTIFT----G--STLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~------~-~~----------~~~~~~----~--~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|..  ...+.|++.  |+.+      . ..          .++.+.    .  ..|.|.+++
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~   87 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLT   87 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccC
Confidence            345677899999999998744  335778763  2211      0 11          111111    1  258889999


Q ss_pred             CCCCeEEEEEeEe
Q psy15206        135 KEDRGAYYCVAQN  147 (232)
Q Consensus       135 ~~~~g~y~C~~~~  147 (232)
                      .+|.+.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (118)
T d1ct8b1          88 TEDSAIYYCARYR  100 (118)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCcceEEEEeeec
Confidence            9999999997543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.81  E-value=0.0017  Score=39.16  Aligned_cols=66  Identities=27%  Similarity=0.613  Sum_probs=43.0

Q ss_pred             CceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------C-C----------CCcEEee----C--CeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------L-P----------NGQTIFT----G--STLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~-~----------~~~~~~~----~--~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|...  ..+.|++.  |+.+      . .          ..++.+.    .  -.|.|.+++
T Consensus         7 g~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~   86 (130)
T d1rhhb1           7 GAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLR   86 (130)
T ss_dssp             CCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccC
Confidence            3356778999999999988543  34888773  2211      0 0          1122111    1  158889999


Q ss_pred             CCCCeEEEEEeEe
Q psy15206        135 KEDRGAYYCVAQN  147 (232)
Q Consensus       135 ~~~~g~y~C~~~~  147 (232)
                      .+|.+.|.|....
T Consensus        87 ~eDtAvYyCAr~~   99 (130)
T d1rhhb1          87 SDDTAVYYCARDF   99 (130)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCcEEEEEEeec
Confidence            9999999997653

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.80  E-value=0.0015  Score=39.04  Aligned_cols=64  Identities=31%  Similarity=0.620  Sum_probs=42.1

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeC--Cee------eCCC-----------CcEEee----C--CeEEECCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRRE--NNA------ILPN-----------GQTIFT----G--STLQIPRITKE  136 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~~~-----------~~~~~~----~--~~l~i~~~~~~  136 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.      +...           .++.+.    .  ..|.|.+++.+
T Consensus        10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e   89 (123)
T d1mqkh_          10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE   89 (123)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence            45668999999999987543  34788773  221      1111           112111    1  14889999999


Q ss_pred             CCeEEEEEeEe
Q psy15206        137 DRGAYYCVAQN  147 (232)
Q Consensus       137 ~~g~y~C~~~~  147 (232)
                      |.+.|.|....
T Consensus        90 DtAvYYCAr~~  100 (123)
T d1mqkh_          90 DTAMYYCVRHE  100 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cccceeEEecC
Confidence            99999997654

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.0016  Score=37.86  Aligned_cols=62  Identities=18%  Similarity=0.292  Sum_probs=38.4

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCC---------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNG---------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ..+.+.|.|.+.|. |. ..+.|.++|.......         ......+.|.+..-.......|+|.+.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35578999999984 43 4699999987653210         011112345554444344567999999863

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.77  E-value=0.0018  Score=39.08  Aligned_cols=55  Identities=13%  Similarity=0.249  Sum_probs=36.0

Q ss_pred             eeeccCeEEEEEEeecCCC----CeEEEeeC--CEEe------c---------------------CCCeEEEEEeccccC
Q psy15206        175 GQALHHDMDLDCHIEAYPH----PILYWAKD--GEIV------V---------------------NDEYHSISNFGTSEG  221 (232)
Q Consensus       175 ~~~~g~~~~l~C~~~~~p~----~~~~W~~~--g~~~------~---------------------~~~~~~~~~~~~~~~  221 (232)
                      .+..|++++|.|.+.|+.-    ..+.|+|.  |..+      .                     ..+.+.|.+.+...+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            4567999999999887532    23678763  1111      0                     112345666677779


Q ss_pred             CceEEEEe
Q psy15206        222 TTGSLQCK  229 (232)
Q Consensus       222 d~g~Y~C~  229 (232)
                      |++.|.|.
T Consensus        91 DtAvYyCA   98 (126)
T d1etzb1          91 DTATYHCA   98 (126)
T ss_dssp             GCEEEEEE
T ss_pred             ccceEEEE
Confidence            99999996

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.77  E-value=0.0032  Score=38.04  Aligned_cols=63  Identities=25%  Similarity=0.593  Sum_probs=41.8

Q ss_pred             eEeecCCcEEEEeeeccCC--CCeEEEEeC--Ceee------CC-----------CCcEEee-C-----CeEEECCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHP--IPTISWRRE--NNAI------LP-----------NGQTIFT-G-----STLQIPRITKE  136 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~------~~-----------~~~~~~~-~-----~~l~i~~~~~~  136 (232)
                      ..+.+|+++.|.|.+.|..  ...+.|++.  |+.+      ..           ..++... +     -.|.|.+++.+
T Consensus        10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e   89 (135)
T d1ieha_          10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE   89 (135)
T ss_dssp             CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred             ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence            4567899999999998754  335888864  2211      11           1122221 1     25889999999


Q ss_pred             CCeEEEEEeE
Q psy15206        137 DRGAYYCVAQ  146 (232)
Q Consensus       137 ~~g~y~C~~~  146 (232)
                      |.+.|+|...
T Consensus        90 DTAvYYCAr~   99 (135)
T d1ieha_          90 DTAVYYCAKY   99 (135)
T ss_dssp             SCEEEEEEEB
T ss_pred             cceeeEEEEe
Confidence            9999999754

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.76  E-value=0.0019  Score=38.47  Aligned_cols=64  Identities=28%  Similarity=0.512  Sum_probs=41.6

Q ss_pred             eEeecCCcEEEEeeeccCCC----CeEEEEeC--Ceee------CCC----------CcEEee----C--CeEEECCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI----PTISWRRE--NNAI------LPN----------GQTIFT----G--STLQIPRITK  135 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~----~~~~W~~~--~~~~------~~~----------~~~~~~----~--~~l~i~~~~~  135 (232)
                      ..+.+|+++.|.|.+.|...    ..+.|++.  |+.+      ...          .++...    .  -.|.|.+++.
T Consensus        10 ~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~   89 (120)
T d1ai1h1          10 AVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTN   89 (120)
T ss_dssp             SEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCG
T ss_pred             ceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeec
Confidence            45678999999999887432    24789774  2221      111          122111    1  2589999999


Q ss_pred             CCCeEEEEEeEe
Q psy15206        136 EDRGAYYCVAQN  147 (232)
Q Consensus       136 ~~~g~y~C~~~~  147 (232)
                      +|.+.|.|....
T Consensus        90 eDtAvYYCAr~~  101 (120)
T d1ai1h1          90 EDTAMYYCSREN  101 (120)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cceeEEEEEecC
Confidence            999999997543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.75  E-value=0.002  Score=38.35  Aligned_cols=63  Identities=30%  Similarity=0.692  Sum_probs=41.1

Q ss_pred             eEeecCCcEEEEeeeccCC--CCeEEEEeC--Ceee------CC-----------CCcEEee----C--CeEEECCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHP--IPTISWRRE--NNAI------LP-----------NGQTIFT----G--STLQIPRITKE  136 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~--~~~~~W~~~--~~~~------~~-----------~~~~~~~----~--~~l~i~~~~~~  136 (232)
                      ..+.+|+++.|.|.+.|..  ...+.|++.  |+.+      ..           ..++...    .  ..|.|.+++.+
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e   89 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD   89 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence            3666899999999987743  335888873  2221      00           1122221    1  14889999999


Q ss_pred             CCeEEEEEeE
Q psy15206        137 DRGAYYCVAQ  146 (232)
Q Consensus       137 ~~g~y~C~~~  146 (232)
                      |.+.|.|...
T Consensus        90 DsAvYYCA~~   99 (119)
T d1qnzh_          90 DSAVYYCAIH   99 (119)
T ss_dssp             GCEEEEEEEC
T ss_pred             ceeEEEEEEe
Confidence            9999999654

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.0022  Score=35.02  Aligned_cols=51  Identities=20%  Similarity=0.359  Sum_probs=33.4

Q ss_pred             ccCeEEEEEEeecCCCCeEEEeeCCEEecCCC--eEEEEEeccccCCceEEEEecC
Q psy15206        178 LHHDMDLDCHIEAYPHPILYWAKDGEIVVNDE--YHSISNFGTSEGTTGSLQCKVP  231 (232)
Q Consensus       178 ~g~~~~l~C~~~~~p~~~~~W~~~g~~~~~~~--~~~~~~~~~~~~d~g~Y~C~~~  231 (232)
                      ...+|.|.|...   ...+.|+++|..+....  +-.+.+-.....-.|.|.|..+
T Consensus        21 ~dGsV~L~Cn~~---~k~i~W~kdg~~i~~~~~~~ktlnLG~~~~DPRGiY~C~g~   73 (86)
T d1jbja1          21 GDGSVLLTCGLT---DKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGA   73 (86)
T ss_dssp             SSCEEEEECSSS---CSCEEEEETTEECCCSSCCSSCCEEEETTSCCEEEEEEEES
T ss_pred             cCCeEEEEeCCC---CcEEEEecCCceecccccccceeecCCcccCCCcceEcCCC
Confidence            456789999542   34899999999876432  2223333334456799999753

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0032  Score=36.93  Aligned_cols=62  Identities=21%  Similarity=0.359  Sum_probs=40.0

Q ss_pred             cCCcEEEEeeeccC-CC-CeEEEEeCCeeeCCCCc-----------EEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGH-PI-PTISWRRENNAILPNGQ-----------TIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~-~~-~~~~W~~~~~~~~~~~~-----------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .+..+.|.|.+.|. |. ..+.|.++|........           .....+.|.|..-.......|+|.+.+..
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35679999999884 43 36999999876532211           11122356665555455558999999854

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.73  E-value=0.0012  Score=37.98  Aligned_cols=62  Identities=15%  Similarity=0.161  Sum_probs=35.0

Q ss_pred             cCCcEEEEeeeccCCC--CeEEEEeCCeeeCCCCc----EEeeCCe---EEECCCCCCCCeEEEEEeEeCC
Q psy15206         88 EGQSVQLECHAEGHPI--PTISWRRENNAILPNGQ----TIFTGST---LQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        88 ~g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~~----~~~~~~~---l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      .++...|.|.+.|..+  ..+.|.++|..+.....    ....+++   .....+...+...|+|.+.+..
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   85 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPS   85 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCC
Confidence            3566789999999443  46999999976542211    1111111   1112334556668999999864

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.73  E-value=0.0026  Score=38.00  Aligned_cols=66  Identities=27%  Similarity=0.617  Sum_probs=42.6

Q ss_pred             CceEeecCCcEEEEeeeccCCCC--eEEEEeC--Ceee------CC-----------CCcEEe-eC-----CeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPIP--TISWRRE--NNAI------LP-----------NGQTIF-TG-----STLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~~------~~-----------~~~~~~-~~-----~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|....  .+.|++.  |+.+      ..           ..++.+ .+     -.|.|.+++
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~   87 (124)
T d2b1hh1           8 GAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLK   87 (124)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccc
Confidence            33567789999999999885533  4788773  2211      11           111111 11     258899999


Q ss_pred             CCCCeEEEEEeEe
Q psy15206        135 KEDRGAYYCVAQN  147 (232)
Q Consensus       135 ~~~~g~y~C~~~~  147 (232)
                      .+|.+.|.|....
T Consensus        88 ~eDTA~YYCAR~~  100 (124)
T d2b1hh1          88 PSDTALYYCARLG  100 (124)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccceEEEEeecC
Confidence            9999999996443

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.72  E-value=0.0029  Score=37.98  Aligned_cols=65  Identities=25%  Similarity=0.610  Sum_probs=42.7

Q ss_pred             ceEeecCCcEEEEeeeccCCCC--eEEEEeC--Ceee------CC-----------CCcEEee----C--CeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPIP--TISWRRE--NNAI------LP-----------NGQTIFT----G--STLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~~--~~~W~~~--~~~~------~~-----------~~~~~~~----~--~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|.+.|....  .+.|++.  |+.+      ..           ..++.+.    .  -.|.|.+++.
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~   88 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS   88 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence            3467789999999999885543  4778763  2111      00           1122221    1  2588899999


Q ss_pred             CCCeEEEEEeEe
Q psy15206        136 EDRGAYYCVAQN  147 (232)
Q Consensus       136 ~~~g~y~C~~~~  147 (232)
                      +|.+.|.|....
T Consensus        89 eDTA~YYCAr~~  100 (128)
T d2nxyd1          89 DDTAVYFCAGVY  100 (128)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             cCceEEEEeEEe
Confidence            999999998654

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.71  E-value=0.0025  Score=38.23  Aligned_cols=64  Identities=30%  Similarity=0.697  Sum_probs=42.0

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CC-----------CCcEEee-C-----CeEEECCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LP-----------NGQTIFT-G-----STLQIPRITKE  136 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~-----------~~~~~~~-~-----~~l~i~~~~~~  136 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.+      ..           ..++.+. +     -.|.|.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e   89 (127)
T d2fx7h1          10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence            45678999999999987543  34888763  2211      10           1122111 1     25889999999


Q ss_pred             CCeEEEEEeEe
Q psy15206        137 DRGAYYCVAQN  147 (232)
Q Consensus       137 ~~g~y~C~~~~  147 (232)
                      |.+.|.|.-..
T Consensus        90 DTavYYCAR~~  100 (127)
T d2fx7h1          90 DTAVYYCAREG  100 (127)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecc
Confidence            99999998654

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.70  E-value=0.0031  Score=37.58  Aligned_cols=65  Identities=25%  Similarity=0.586  Sum_probs=42.4

Q ss_pred             CceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CCC-----------CcEEee----C--CeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LPN-----------GQTIFT----G--STLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~~-----------~~~~~~----~--~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|...  ..+.|++.  |+.+      ...           .++.+.    .  -.|.|.+++
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~   87 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLK   87 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCC
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccC
Confidence            3356678999999999988543  35888873  2211      111           121111    1  158889999


Q ss_pred             CCCCeEEEEEeE
Q psy15206        135 KEDRGAYYCVAQ  146 (232)
Q Consensus       135 ~~~~g~y~C~~~  146 (232)
                      .+|.+.|.|...
T Consensus        88 ~eDTAvYYCAR~   99 (124)
T d1yedb1          88 SEDSAVYFCTRW   99 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEeccc
Confidence            999999999754

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.69  E-value=0.001  Score=38.28  Aligned_cols=58  Identities=21%  Similarity=0.403  Sum_probs=35.9

Q ss_pred             CCcEEEEeeecc-CCCC-eEEEEeCCeeeCCCCc---EE------eeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         89 GQSVQLECHAEG-HPIP-TISWRRENNAILPNGQ---TI------FTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        89 g~~~~l~C~~~~-~~~~-~~~W~~~~~~~~~~~~---~~------~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      +..+.|.|.+.| +|.. .+.|++++........   ..      ...+.|.+..   ++...|+|.+.+..
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            457999999999 4544 6999998876532211   01      1112344443   34457999999853

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.67  E-value=0.0017  Score=38.96  Aligned_cols=63  Identities=17%  Similarity=0.077  Sum_probs=39.6

Q ss_pred             ecCCcEEEEeeeccC-CC---CeEEEEeCCeeeCCCCc---EEee------CCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         87 KEGQSVQLECHAEGH-PI---PTISWRRENNAILPNGQ---TIFT------GSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        87 ~~g~~~~l~C~~~~~-~~---~~~~W~~~~~~~~~~~~---~~~~------~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ..++.+.|.|.+.+. |.   ..+.|++++........   ....      .+.|.|..-.......|+|.+.+..
T Consensus        30 ~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          30 MISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             CTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             ccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            357789999999884 32   46889999987643211   1111      2345544444345568999999854

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.67  E-value=0.0039  Score=37.39  Aligned_cols=65  Identities=26%  Similarity=0.496  Sum_probs=41.7

Q ss_pred             ceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------C-CC----------CcEEee----C--CeEEECCCCC
Q psy15206         83 LSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------L-PN----------GQTIFT----G--STLQIPRITK  135 (232)
Q Consensus        83 ~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~-~~----------~~~~~~----~--~~l~i~~~~~  135 (232)
                      ...+.+|+++.|.|.+.|...  ..+.|++.  |+.+      . ..          .++...    .  ..|.|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            346678999999999987443  35788874  2211      1 10          122111    1  2489999999


Q ss_pred             CCCeEEEEEeEe
Q psy15206        136 EDRGAYYCVAQN  147 (232)
Q Consensus       136 ~~~g~y~C~~~~  147 (232)
                      +|.+.|.|....
T Consensus        88 eDTAvYYCAr~~   99 (126)
T d1rjca1          88 EDTAMYYCAADT   99 (126)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccCceeEEEeec
Confidence            999999998543

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.65  E-value=0.0033  Score=37.65  Aligned_cols=65  Identities=29%  Similarity=0.668  Sum_probs=42.7

Q ss_pred             CceEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CC-----------CCcEEee-C-----CeEEECCCC
Q psy15206         82 QLSVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LP-----------NGQTIFT-G-----STLQIPRIT  134 (232)
Q Consensus        82 ~~~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~-----------~~~~~~~-~-----~~l~i~~~~  134 (232)
                      ....+.+|+++.|.|.+.|...  ..+.|++.  |+.+      ..           ..++.+. +     ..|.|.+++
T Consensus         7 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~   86 (126)
T d1lmka1           7 GTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLT   86 (126)
T ss_dssp             CCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccC
Confidence            3456778999999999988543  34788773  2211      11           1122221 1     258899999


Q ss_pred             CCCCeEEEEEeE
Q psy15206        135 KEDRGAYYCVAQ  146 (232)
Q Consensus       135 ~~~~g~y~C~~~  146 (232)
                      .+|.+.|.|...
T Consensus        87 ~eDTAvYYCAr~   98 (126)
T d1lmka1          87 SEDSAVYYCARG   98 (126)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             CCcceEEEEeec
Confidence            999999999743

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.62  E-value=0.0022  Score=37.31  Aligned_cols=61  Identities=15%  Similarity=0.238  Sum_probs=38.5

Q ss_pred             CCcEEEEeeeccCCC--CeEEEEeCCeeeCCCC---------cEEeeCCeEEECCCCCCCCeEEEEEeEeCC
Q psy15206         89 GQSVQLECHAEGHPI--PTISWRRENNAILPNG---------QTIFTGSTLQIPRITKEDRGAYYCVAQNGI  149 (232)
Q Consensus        89 g~~~~l~C~~~~~~~--~~~~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~  149 (232)
                      ...+.|.|.+.|..+  ..+.|.++|.......         ......+.|.|..-.......|+|.+.+..
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~   90 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEG   90 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            567899999988443  3699999987643210         011112345555544455567999999853

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.62  E-value=0.0028  Score=37.79  Aligned_cols=64  Identities=27%  Similarity=0.550  Sum_probs=41.9

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeC--Ceee------CCC-----------CcEEee-C-----CeEEECCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRRE--NNAI------LPN-----------GQTIFT-G-----STLQIPRITKE  136 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~~------~~~-----------~~~~~~-~-----~~l~i~~~~~~  136 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.+      ...           .++... +     ..|.|.+++.+
T Consensus        10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e   89 (121)
T d1ol0a_          10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence            45678999999999987543  34788763  2221      111           122111 1     15899999999


Q ss_pred             CCeEEEEEeEe
Q psy15206        137 DRGAYYCVAQN  147 (232)
Q Consensus       137 ~~g~y~C~~~~  147 (232)
                      |.+.|.|....
T Consensus        90 DtAvYYCAr~~  100 (121)
T d1ol0a_          90 DTAVYYCAREP  100 (121)
T ss_dssp             GCEEEEEEECC
T ss_pred             cceEEEEEEec
Confidence            99999997543

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0021  Score=36.69  Aligned_cols=60  Identities=12%  Similarity=0.170  Sum_probs=41.0

Q ss_pred             ceeeeeccCeEEEEEEeecCCCCeE-EEeeCCEEec-CCCeEE------EEEeccccCCceEEEEecCC
Q psy15206        172 TRIGQALHHDMDLDCHIEAYPHPIL-YWAKDGEIVV-NDEYHS------ISNFGTSEGTTGSLQCKVPV  232 (232)
Q Consensus       172 ~~~~~~~g~~~~l~C~~~~~p~~~~-~W~~~g~~~~-~~~~~~------~~~~~~~~~d~g~Y~C~~~~  232 (232)
                      ..+.+.+|+++.+.|.+. .|..++ .|..++..+. .+..+.      +.+.+....+.|.|.|++.+
T Consensus        13 ~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~   80 (95)
T d1fltx_          13 EIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATV   80 (95)
T ss_dssp             EEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEE
Confidence            345677899999999984 566665 4555666554 333333      55556777899999999863

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.61  E-value=0.0023  Score=38.32  Aligned_cols=64  Identities=28%  Similarity=0.593  Sum_probs=42.1

Q ss_pred             eEeecCCcEEEEeeeccCCC--CeEEEEeC--Cee------eC-CC----------CcEEee-C-----CeEEECCCCCC
Q psy15206         84 SVAKEGQSVQLECHAEGHPI--PTISWRRE--NNA------IL-PN----------GQTIFT-G-----STLQIPRITKE  136 (232)
Q Consensus        84 ~~~~~g~~~~l~C~~~~~~~--~~~~W~~~--~~~------~~-~~----------~~~~~~-~-----~~l~i~~~~~~  136 (232)
                      ..+.+|+++.|.|.+.|...  ..+.|++.  |+.      +. ..          .++.+. +     ..|.|.+++.+
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e   89 (126)
T d1dfbh1          10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE   89 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence            45678999999999987543  34888874  221      11 11          111111 1     25889999999


Q ss_pred             CCeEEEEEeEe
Q psy15206        137 DRGAYYCVAQN  147 (232)
Q Consensus       137 ~~g~y~C~~~~  147 (232)
                      |.+.|.|....
T Consensus        90 DtavYYCAr~~  100 (126)
T d1dfbh1          90 DMALYYCVKGR  100 (126)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEEecc
Confidence            99999997543