Psyllid ID: psy15241

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------
Protein Sequence
MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATTPH
Secondary Structure (PSIPRED)
ccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccEEEcccccccccccccccccccc
Coil and Loop (DISEMBL)
mnveslrsgqkegqsSAEVRIAKTAITLCALFVASWTPYAVVALTgafgdqslltpgltmipactckavacldpyvyaishpryrlelskripclgikekepeketasaqteattph
Flexible Loop (DISEMBL)
mnveslrsgqkegqssaEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPclgikekepeketasaqteattph
Low Complexity Region (SEG)
MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATTPH
Disordered region (IsUnstruct)
******************VRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGI********************
Disordered Region (DISOPRED)
*NV*S****************AKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIP************************
Disordered Region (DISEMBL)
*****************EVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKE******************
Disordered Region (DISPRO)
***************SAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKE******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATTPH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	117	2.2.26 [Sep-21-2011]
P17646	383	Opsin Rh4 OS=Drosophila v	N/A	N/A	0.880	0.268	0.708	4e-40
P29404	380	Opsin Rh4 OS=Drosophila p	yes	N/A	0.914	0.281	0.682	5e-40
P08255	378	Opsin Rh4 OS=Drosophila m	yes	N/A	0.880	0.272	0.708	1e-39
P28680	382	Opsin Rh3 OS=Drosophila p	no	N/A	0.914	0.280	0.682	2e-39
P04950	383	Opsin Rh3 OS=Drosophila m	no	N/A	1.0	0.305	0.606	5e-39
O61303	371	Opsin, ultraviolet-sensit	yes	N/A	0.854	0.269	0.7	5e-38
O02465	377	Opsin-2 OS=Manduca sexta	N/A	N/A	0.991	0.307	0.612	5e-37
O96107	384	Opsin-3 OS=Manduca sexta	N/A	N/A	0.991	0.302	0.542	8e-34
P91657	382	Opsin Rh5 OS=Drosophila m	no	N/A	0.982	0.301	0.504	1e-31
P90680	377	Opsin, blue-sensitive OS=	no	N/A	0.948	0.294	0.562	1e-29

>sp|P17646|OPS4_DROVI Opsin Rh4 OS=Drosophila virilis GN=Rh4 PE=3 SV=2

 Score =  162 bits (411), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/103 (70%), Positives = 84/103 (81%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNVESLRS   + + +AE+RIAK AIT+C LF  SWTPY V++L GAFGD+SLLTPG TM
Sbjct: 262 MNVESLRSNVDKSKDTAEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATM 321

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPE 103
           IPACTCK VAC+DP+VYAISHPRYR+EL KR P L I EK PE
Sbjct: 322 IPACTCKLVACIDPFVYAISHPRYRMELQKRCPWLAIDEKAPE 364

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.
Drosophila virilis (taxid: 7244)

>sp|P29404|OPS4_DROPS Opsin Rh4 OS=Drosophila pseudoobscura pseudoobscura GN=Rh4 PE=1 SV=2

 Score =  162 bits (411), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/107 (68%), Positives = 86/107 (80%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNVESLRS   + + +AE+RIAK AIT+C LF  SWTPY V++L GAFGD+SLLTPG TM
Sbjct: 259 MNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATM 318

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETA 107
           IPACTCK VAC+DP+VYAISHPRYR+EL KR P LG+ EK  E  +A
Sbjct: 319 IPACTCKLVACIDPFVYAISHPRYRMELQKRCPWLGVNEKSGEASSA 365

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|P08255|OPS4_DROME Opsin Rh4 OS=Drosophila melanogaster GN=Rh4 PE=1 SV=2

 Score =  161 bits (408), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/103 (70%), Positives = 84/103 (81%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNVESLRS   + + +AE+RIAK AIT+C LF  SWTPY V++L GAFGD+SLLTPG TM
Sbjct: 258 MNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATM 317

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPE 103
           IPACTCK VAC+DP+VYAISHPRYRLEL KR P LG+ EK  E
Sbjct: 318 IPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGVNEKSGE 360

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila melanogaster (taxid: 7227)

>sp|P28680|OPS3_DROPS Opsin Rh3 OS=Drosophila pseudoobscura pseudoobscura GN=Rh3 PE=1 SV=3

 Score =  160 bits (406), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/107 (68%), Positives = 86/107 (80%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNV+SLRS   + + +AE+RIAK AIT+C LF ASWTPY V++L GAFGD++LLTPG TM
Sbjct: 261 MNVDSLRSNVDKSKEAAEIRIAKAAITICFLFFASWTPYGVMSLIGAFGDKTLLTPGATM 320

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETA 107
           IPACTCK VAC+DP+VYAISHPRYR+EL KR P L I EK PE   A
Sbjct: 321 IPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAISEKAPESAAA 367

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|P04950|OPS3_DROME Opsin Rh3 OS=Drosophila melanogaster GN=Rh3 PE=1 SV=1

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 71/117 (60%), Positives = 87/117 (74%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNVESLRS   + + +AE+RIAK AIT+C LF  SWTPY V++L GAFGD++LLTPG TM
Sbjct: 262 MNVESLRSNVDKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAFGDKTLLTPGATM 321

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATTPH 117
           IPAC CK VAC+DP+VYAISHPRYR+EL KR P L + EK PE    ++ +    P 
Sbjct: 322 IPACACKMVACIDPFVYAISHPRYRMELQKRCPWLALNEKAPESSAVASTSTTQEPQ 378

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila melanogaster (taxid: 7227)

>sp|O61303|OPSUV_APIME Opsin, ultraviolet-sensitive OS=Apis mellifera GN=UVOP PE=1 SV=1

 Score =  155 bits (393), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/100 (70%), Positives = 85/100 (85%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNV+SLRS       SAE+RIAK AIT+C L+V SWTPY V+++ GAFG+++LLTPG+TM
Sbjct: 252 MNVDSLRSNANTSSQSAEIRIAKAAITICFLYVLSWTPYGVMSMIGAFGNKALLTPGVTM 311

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEK 100
           IPACTCKAVACLDPYVYAISHP+YRLEL KR+P L ++EK
Sbjct: 312 IPACTCKAVACLDPYVYAISHPKYRLELQKRLPWLELQEK 351

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to 11-cis-retinal.

Apis mellifera (taxid: 7460)

>sp|O02465|OPS2_MANSE Opsin-2 OS=Manduca sexta GN=OP2 PE=2 SV=2

 Score =  152 bits (385), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 86/116 (74%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNVESLR+ Q     SAE+RIAK A+T+C LFVASWTPY V+AL GAFG+Q LLTPG+TM
Sbjct: 257 MNVESLRANQGGSSESAEIRIAKAALTVCFLFVASWTPYGVMALIGAFGNQQLLTPGVTM 316

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATTP 116
           IPA  CKAVAC+ P+VYAI HP YR EL +R+P L I E +    TA++ T  + P
Sbjct: 317 IPAVACKAVACISPWVYAIRHPMYRQELQRRMPWLQIDEPDDTVSTATSNTTNSAP 372

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. May play a role in photoperiodic photoreception.

Manduca sexta (taxid: 7130)

>sp|O96107|OPS3_MANSE Opsin-3 OS=Manduca sexta GN=OP3 PE=2 SV=1

 Score =  142 bits (357), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/118 (54%), Positives = 86/118 (72%), Gaps = 2/118 (1%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNV+SL S +++   S E+RIAK A T+  LF+ +WTPYA V +TGAFGD++LLTP  TM
Sbjct: 262 MNVKSLASNKEDNSRSVEIRIAKVAFTIFFLFICAWTPYAFVTMTGAFGDRTLLTPIATM 321

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPE--KETASAQTEATTP 116
           IPA  CK V+C+DP+VYAI+HPRYR EL KR+P +G++E++P+    T S  T    P
Sbjct: 322 IPAVCCKVVSCIDPWVYAINHPRYRAELQKRLPWMGVREQDPDAVSTTTSVATAGFQP 379

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal. May play a role in photoperiodic photoreception.

Manduca sexta (taxid: 7130)

>sp|P91657|OPS5_DROME Opsin Rh5 OS=Drosophila melanogaster GN=Rh5 PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/115 (50%), Positives = 80/115 (69%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNV+SL +       S E+RIAK A+ +  LF+ +WTPY+VVAL G FG+Q L+TP ++M
Sbjct: 256 MNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSM 315

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATT 115
           +P   CK+V+CLDP+VYA SHP+YRLEL +R+P LGI+EK     T+  Q    +
Sbjct: 316 LPCLACKSVSCLDPWVYATSHPKYRLELERRLPWLGIREKHATSGTSGGQESVAS 370

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal.

Drosophila melanogaster (taxid: 7227)

>sp|P90680|OPSB_APIME Opsin, blue-sensitive OS=Apis mellifera GN=BLOP PE=1 SV=2

 Score =  128 bits (322), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/112 (56%), Positives = 80/112 (71%), Gaps = 1/112 (0%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNV+SL S Q + + SAEVRIAK A T+  LF+ +WTPYA VAL G +G++ LLTP  TM
Sbjct: 261 MNVKSLVSNQDK-ERSAEVRIAKVAFTIFFLFLLAWTPYATVALIGVYGNRELLTPVSTM 319

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTE 112
           +PA   K V+C+DP++YAI+HPRYR EL KR   +GI E E   +  SAQTE
Sbjct: 320 LPAVFAKTVSCIDPWIYAINHPRYRQELQKRCKWMGIHEPETTSDATSAQTE 371

Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to 11-cis-retinal.

Apis mellifera (taxid: 7460)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
345482381	377	PREDICTED: opsin, ultraviolet-sensitive-	0.974	0.302	0.719	7e-43
328721769	377	PREDICTED: opsin, ultraviolet-sensitive-	0.965	0.299	0.747	9e-43
157123730	381	ultraviolet-sensitive opsin [Aedes aegyp	0.974	0.299	0.704	2e-41
334363050	377	UV-sensitive opsin [Gryllus bimaculatus]	0.854	0.265	0.77	1e-40
205825432	376	UV-opsin precursor [Dianemobius nigrofas	0.854	0.265	0.77	3e-40
158295386	379	AGAP006126-PA [Anopheles gambiae str. PE	0.948	0.292	0.723	3e-40
170047283	379	ultraviolet-sensitive opsin [Culex quinq	0.888	0.274	0.740	6e-40
307212281	369	Opsin, ultraviolet-sensitive [Harpegnath	0.940	0.298	0.692	2e-39
63086918	389	rhodopsin 3 [Calliphora vicina]	0.948	0.285	0.648	7e-39
10441608	371	UV-wavelength like opsin [Megoura viciae	0.948	0.299	0.695	7e-39

>gi|345482381|ref|XP_001608074.2| PREDICTED: opsin, ultraviolet-sensitive-like [Nasonia vitripennis]

 Score =  177 bits (449), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 82/114 (71%), Positives = 96/114 (84%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNVESLRSGQ + Q+SAEVRIAK A+T+C LFVA+WTPY V++L GAFG++SLLTPG+TM
Sbjct: 260 MNVESLRSGQNKDQASAEVRIAKVALTICFLFVAAWTPYGVMSLIGAFGNKSLLTPGVTM 319

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEAT 114
           IPAC CKAVACLDPYVYAISHPRYRLEL KR+P L ++EK P  +  S  TEA 
Sbjct: 320 IPACCCKAVACLDPYVYAISHPRYRLELQKRMPWLELQEKPPASDATSTTTEAV 373

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328721769|ref|XP_001951613.2| PREDICTED: opsin, ultraviolet-sensitive-like [Acyrthosiphon pisum]

 Score =  177 bits (448), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 92/115 (80%), Gaps = 2/115 (1%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNVESLRS Q     SAEVRIAK AIT+C LF+ASWTPYAVVA+ GAFGD+SLLTPG+TM
Sbjct: 263 MNVESLRSNQDANAQSAEVRIAKAAITICCLFIASWTPYAVVAMIGAFGDRSLLTPGITM 322

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEP--EKETASAQTEA 113
           IPA  CK VAC DPYVYAISHPRYRLELSKR+PCLGI EK P    ET S  T A
Sbjct: 323 IPAIFCKTVACFDPYVYAISHPRYRLELSKRVPCLGISEKPPPTASETQSTTTAA 377

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123730|ref|XP_001653866.1| ultraviolet-sensitive opsin [Aedes aegypti] gi|94469258|gb|ABF18478.1| ultraviolet-sensitive opsin [Aedes aegypti] gi|108874286|gb|EAT38511.1| AAEL009615-PA [Aedes aegypti]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 94/115 (81%), Gaps = 1/115 (0%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNV+SLRS Q +  +S EVRIAK AIT+C LFVASWTPYAV+AL GAFGD++LLTPG+TM
Sbjct: 259 MNVDSLRSNQNQANTSVEVRIAKAAITVCFLFVASWTPYAVLALIGAFGDKTLLTPGVTM 318

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATT 115
            PAC CK VACLDPYVYAISHPRYR+EL KR+P L I E  P  ++AS  T+ATT
Sbjct: 319 FPACACKFVACLDPYVYAISHPRYRVELQKRLPWLAITESLPS-DSASNVTDATT 372

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|334363050|gb|AEG78686.1| UV-sensitive opsin [Gryllus bimaculatus]

 Score =  170 bits (431), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 91/100 (91%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNV+SLRS Q++ Q+SAE+RIAK AI +C LFVASWTPYAV+AL GAFG+++LLTPG+TM
Sbjct: 256 MNVDSLRSNQQQNQTSAEIRIAKVAIGICFLFVASWTPYAVLALIGAFGNKTLLTPGVTM 315

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEK 100
           IPACTCKAVACLDPYVYAISHPRYR+EL KR+P L IKE+
Sbjct: 316 IPACTCKAVACLDPYVYAISHPRYRVELQKRLPWLCIKEQ 355

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|205825432|dbj|BAG71429.1| UV-opsin precursor [Dianemobius nigrofasciatus]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 90/100 (90%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNV+SLRS Q++ Q+SAE+RIAK AI +C LFVASWTPYAV+AL GAFG+++LLTPG+TM
Sbjct: 256 MNVDSLRSNQQQNQTSAEIRIAKVAIGICFLFVASWTPYAVLALIGAFGNKALLTPGVTM 315

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEK 100
           IPACTCKAVACLDPYVYAISHPRYR EL KR+P L IKE+
Sbjct: 316 IPACTCKAVACLDPYVYAISHPRYRAELQKRLPWLCIKEE 355

Source: Dianemobius nigrofasciatus

Species: Dianemobius nigrofasciatus

Genus: Dianemobius

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158295386|ref|XP_001688790.1| AGAP006126-PA [Anopheles gambiae str. PEST] gi|158295388|ref|XP_556823.3| AGAP006126-PB [Anopheles gambiae str. PEST] gi|157016012|gb|EDO63796.1| AGAP006126-PA [Anopheles gambiae str. PEST] gi|157016013|gb|EAL40010.3| AGAP006126-PB [Anopheles gambiae str. PEST]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 81/112 (72%), Positives = 90/112 (80%), Gaps = 1/112 (0%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNVESLRS Q +  +S E+RIAK AIT+C LFVASWTPYAV+AL GAFGD+SLLTPG+TM
Sbjct: 259 MNVESLRSNQNQKDASVEIRIAKAAITVCFLFVASWTPYAVLALIGAFGDKSLLTPGVTM 318

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTE 112
            PAC CK VACLDPYVYAISHPRYR+EL KR+P L I E  P  E AS  TE
Sbjct: 319 FPACACKFVACLDPYVYAISHPRYRIELQKRLPWLAITETLP-AENASTCTE 369

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047283|ref|XP_001851157.1| ultraviolet-sensitive opsin [Culex quinquefasciatus] gi|167869738|gb|EDS33121.1| ultraviolet-sensitive opsin [Culex quinquefasciatus]

 Score =  167 bits (424), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 85/104 (81%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNV+SLRS Q +  SS EVRIAK AIT+C LFVASWTPYAV+AL GAFGD+SLLTPG+TM
Sbjct: 259 MNVDSLRSNQNQANSSVEVRIAKAAITVCFLFVASWTPYAVLALIGAFGDKSLLTPGVTM 318

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEK 104
            PAC CK VACLDPYVYAISHPRYR+EL KR+P L I E  P  
Sbjct: 319 FPACACKFVACLDPYVYAISHPRYRVELQKRLPWLAITETLPSD 362

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212281|gb|EFN88089.1| Opsin, ultraviolet-sensitive [Harpegnathos saltator]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 90/114 (78%), Gaps = 4/114 (3%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNVESLRS       SAE+RIAK AIT+C LFV SWTPY V+A+ GAFGD++LLTPG+TM
Sbjct: 252 MNVESLRSNANTNAQSAEIRIAKAAITICFLFVLSWTPYGVLAMIGAFGDKALLTPGITM 311

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEAT 114
           IPACTCK VACLDPYVYAISHPRYRLEL KR+P L ++EK P    A AQ+  T
Sbjct: 312 IPACTCKFVACLDPYVYAISHPRYRLELQKRLPWLELQEKPP----ADAQSTTT 361

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|63086918|emb|CAI47588.1| rhodopsin 3 [Calliphora vicina]

 Score =  164 bits (415), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 72/111 (64%), Positives = 89/111 (80%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNVESLRS   + + +AE+RIAK AIT+C LF  SWTPY V++L GAFGD+SLLTPG+TM
Sbjct: 263 MNVESLRSNVDKSKDTAEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGVTM 322

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQT 111
           IPAC CK VAC+DP+VYAISHP+YR+EL KR+P L I EK PE  + ++ T
Sbjct: 323 IPACACKMVACIDPFVYAISHPKYRMELQKRLPWLAINEKAPEASSTASTT 373

Source: Calliphora vicina

Species: Calliphora vicina

Genus: Calliphora

Family: Calliphoridae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|10441608|gb|AAG17120.1| UV-wavelength like opsin [Megoura viciae]

 Score =  164 bits (414), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 80/115 (69%), Positives = 91/115 (79%), Gaps = 4/115 (3%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           MNVESLRS Q     SAEVRIAK AIT+C LFVA+WTPYAVVA+ GAFGDQSLLTP  +M
Sbjct: 258 MNVESLRSNQDANAQSAEVRIAKAAITICFLFVAAWTPYAVVAMIGAFGDQSLLTPIASM 317

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATT 115
           +PA   K VAC DPYVYAISHP+YRLELSKR+PCLGI EK P    A++ T++ T
Sbjct: 318 LPAVFAKTVACFDPYVYAISHPKYRLELSKRVPCLGITEKPP----AASDTQSIT 368

Source: Megoura viciae

Species: Megoura viciae

Genus: Megoura

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	117
FB|FBgn0003250	378	Rh4 "Rhodopsin 4" [Drosophila	0.948	0.293	0.675	2.4e-37
FB|FBgn0003249	383	Rh3 "Rhodopsin 3" [Drosophila	0.965	0.295	0.649	1.7e-36
FB|FBgn0014019	382	Rh5 "Rhodopsin 5" [Drosophila	0.940	0.287	0.527	7.1e-29
FB|FBgn0002940	373	ninaE "neither inactivation no	0.948	0.297	0.421	2.2e-18
UNIPROTKB|Q5YKK9	487	OPN4 "Melanopsin" [Felis catus	0.777	0.186	0.395	2.6e-17
UNIPROTKB|Q4R1I4	706	OPN4 "Melanopsin" [Branchiosto	0.897	0.148	0.416	5.2e-16
FB|FBgn0003248	381	Rh2 "Rhodopsin 2" [Drosophila	0.965	0.296	0.396	1.2e-15
ZFIN|ZDB-GENE-080415-3	565	opn4b "opsin 4b" [Danio rerio	0.837	0.173	0.408	1.5e-15
RGD|621701	474	Opn4 "opsin 4" [Rattus norvegi	0.692	0.170	0.444	1.7e-15
MGI|MGI:1353425	521	Opn4 "opsin 4 (melanopsin)" [M	0.786	0.176	0.402	2.8e-15

FB|FBgn0003250 Rh4 "Rhodopsin 4" [Drosophila melanogaster (taxid:7227)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 75/111 (67%), Positives = 88/111 (79%)

Query:     1 MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
             MNVESLRS   + + +AE+RIAK AIT+C LF  SWTPY V++L GAFGD+SLLTPG TM
Sbjct:   258 MNVESLRSNVDKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAFGDKSLLTPGATM 317

Query:    61 IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQT 111
             IPACTCK VAC+DP+VYAISHPRYRLEL KR P LG+ EK  E  +A + T
Sbjct:   318 IPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGVNEKSGEISSAQSTT 368

GO:0007604 "phototransduction, UV" evidence=NAS;IDA;TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0009589 "detection of UV" evidence=TAS

GO:0007602 "phototransduction" evidence=NAS

GO:0004930 "G-protein coupled receptor activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007601 "visual perception" evidence=IEA

FB|FBgn0003249 Rh3 "Rhodopsin 3" [Drosophila melanogaster (taxid:7227)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 74/114 (64%), Positives = 88/114 (77%)

Query:     1 MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
             MNVESLRS   + + +AE+RIAK AIT+C LF  SWTPY V++L GAFGD++LLTPG TM
Sbjct:   262 MNVESLRSNVDKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAFGDKTLLTPGATM 321

Query:    61 IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEAT 114
             IPAC CK VAC+DP+VYAISHPRYR+EL KR P L + EK PE  +A A T  T
Sbjct:   322 IPACACKMVACIDPFVYAISHPRYRMELQKRCPWLALNEKAPES-SAVASTSTT 374

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0007604 "phototransduction, UV" evidence=NAS;IDA;TAS

GO:0009589 "detection of UV" evidence=TAS

GO:0007602 "phototransduction" evidence=NAS

GO:0004930 "G-protein coupled receptor activity" evidence=NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016039 "absorption of UV light" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

FB|FBgn0014019 Rh5 "Rhodopsin 5" [Drosophila melanogaster (taxid:7227)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 58/110 (52%), Positives = 79/110 (71%)

Query:     1 MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
             MNV+SL +       S E+RIAK A+ +  LF+ +WTPY+VVAL G FG+Q L+TP ++M
Sbjct:   256 MNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALIGCFGEQQLITPFVSM 315

Query:    61 IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQ 110
             +P   CK+V+CLDP+VYA SHP+YRLEL +R+P LGI+EK     T+  Q
Sbjct:   316 LPCLACKSVSCLDPWVYATSHPKYRLELERRLPWLGIREKHATSGTSGGQ 365

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IGI;ISS;NAS

GO:0016021 "integral to membrane" evidence=ISS;NAS

GO:0007602 "phototransduction" evidence=IGI;ISS;NAS

GO:0009588 "UV-A, blue light phototransduction" evidence=NAS

GO:0016028 "rhabdomere" evidence=IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0016038 "absorption of visible light" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IDA

GO:0007605 "sensory perception of sound" evidence=IMP

FB|FBgn0002940 ninaE "neither inactivation nor afterpotential E" [Drosophila melanogaster (taxid:7227)]

 Score = 225 (84.3 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 48/114 (42%), Positives = 72/114 (63%)

Query:     1 MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
             MNV+SLRS + + + SAE ++AK A+    L+  +WTPY V+   G F  + L TP  T+
Sbjct:   255 MNVKSLRSSE-DAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLFKFEGL-TPLNTI 312

Query:    61 IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEAT 114
               AC  K+ AC +P VY ISHP+YRL L ++ PC  +  K  + +++ AQ++AT
Sbjct:   313 WGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC-VFGKVDDGKSSDAQSQAT 365

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007602 "phototransduction" evidence=ISS;IMP;NAS

GO:0016028 "rhabdomere" evidence=IDA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0005791 "rough endoplasmic reticulum" evidence=IDA

GO:0005771 "multivesicular body" evidence=IDA

GO:0016029 "subrhabdomeral cisterna" evidence=IDA

GO:0005767 "secondary lysosome" evidence=IDA

GO:0016027 "inaD signaling complex" evidence=TAS;IPI

GO:0008594 "photoreceptor cell morphogenesis" evidence=IMP

GO:0004930 "G-protein coupled receptor activity" evidence=IEA;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0042052 "rhabdomere development" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0046673 "negative regulation of compound eye retinal cell programmed cell death" evidence=IMP

GO:0009642 "response to light intensity" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0043052 "thermotaxis" evidence=IMP

UNIPROTKB|Q5YKK9 OPN4 "Melanopsin" [Felis catus (taxid:9685)]

 Score = 196 (74.1 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
 Identities = 36/91 (39%), Positives = 58/91 (63%)

Query:     7 RSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTC 66
             RS ++  +   E ++AK  + +  LFV SW PY++VAL    G   +LTP +  +PA   
Sbjct:   275 RSPRQRQRLQREWKMAKIELLVILLFVLSWAPYSIVALMAFAGYAHVLTPYMNSVPAVIA 334

Query:    67 KAVACLDPYVYAISHPRYRLELSKRIPCLGI 97
             KA A  +P +YAI+HP+YR+ +++ +PCLG+
Sbjct:   335 KASAIHNPIIYAITHPKYRMAIAQHLPCLGV 365

GO:0005502 "11-cis retinal binding" evidence=ISS

GO:0007602 "phototransduction" evidence=ISS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS

GO:0009584 "detection of visible light" evidence=ISS

GO:0016021 "integral to membrane" evidence=TAS

GO:0042752 "regulation of circadian rhythm" evidence=ISS

UNIPROTKB|Q4R1I4 OPN4 "Melanopsin" [Branchiostoma belcheri (taxid:7741)]

 Score = 210 (79.0 bits), Expect = 5.2e-16, P = 5.2e-16
 Identities = 45/108 (41%), Positives = 66/108 (61%)

Query:    10 QKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAV 69
             Q+E Q   E++ AK A  + +LF+++WTPYAVV+  G  G Q L+TP L  IPA   K+ 
Sbjct:   301 QQERQRKNEIKTAKIAFIVISLFMSAWTPYAVVSALGTLGYQDLVTPYLQSIPAMFAKSS 360

Query:    70 ACLDPYVYAISHPRYRLELSKRIPCLG--IKEKEPEKETAS-AQTEAT 114
             A   P VYAI++P++R  + K IPCL   +   E E +T +  Q+ A+
Sbjct:   361 AVYSPIVYAITYPKFREAVKKHIPCLSGCLPASEEETKTKTRGQSSAS 408

GO:0004744 "retinal isomerase activity" evidence=IDA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IDA

GO:0007602 "phototransduction" evidence=TAS

GO:0008020 "G-protein coupled photoreceptor activity" evidence=IDA

GO:0009584 "detection of visible light" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

FB|FBgn0003248 Rh2 "Rhodopsin 2" [Drosophila melanogaster (taxid:7227)]

 Score = 201 (75.8 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 46/116 (39%), Positives = 68/116 (58%)

Query:     1 MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
             MNV+SLRS + +   SAE ++AK A+T  +L+  +WTPY V+   G F    L TP  T+
Sbjct:   262 MNVKSLRSSE-DCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLFKIDGL-TPLTTI 319

Query:    61 IPACTCKAVACLDPYVYAISHPRYRLELSKRIP-CLGIKEKEPEKETASAQTEATT 115
               A   K  A  +P VY ISHP+YR+ L ++ P C+     EP+ +  ++ TE T+
Sbjct:   320 WGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVFGNTDEPKPDAPASDTETTS 375

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISS;NAS;IDA;TAS

GO:0007602 "phototransduction" evidence=IGI;NAS

GO:0016021 "integral to membrane" evidence=IEA;ISS;NAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0007601 "visual perception" evidence=IEA

ZFIN|ZDB-GENE-080415-3 opn4b "opsin 4b" [Danio rerio (taxid:7955)]

 Score = 204 (76.9 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 40/98 (40%), Positives = 62/98 (63%)

Query:    18 EVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVY 77
             E ++AK A+ +  L+V SW+PY+ VALT   G   +LTP +  +PA   KA A  +P +Y
Sbjct:   289 EWKMAKIALIVILLYVISWSPYSCVALTAFAGYADMLTPYMNSVPAVIAKASAIHNPIIY 348

Query:    78 AISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATT 115
             AI+HP+YR  ++K IPCLG+    P ++  S+ +  +T
Sbjct:   349 AITHPKYRSAIAKYIPCLGVLLCVPRRDRFSSSSFIST 386

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0009881 "photoreceptor activity" evidence=IEA;IDA

GO:0050896 "response to stimulus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0004871 "signal transducer activity" evidence=IEA

RGD|621701 Opn4 "opsin 4" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 36/81 (44%), Positives = 55/81 (67%)

Query:    17 AEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYV 76
             +E ++AK A+ +  LFV SW PY+ VAL G  G   +LTP ++ +PA   KA A  +P +
Sbjct:   287 SEWKMAKVALIVILLFVLSWAPYSTVALVGFAGYSHILTPYMSSVPAVIAKASAIHNPII 346

Query:    77 YAISHPRYRLELSKRIPCLGI 97
             YAI+HP+YR  +++ +PCLG+
Sbjct:   347 YAITHPKYRAAIAQHLPCLGV 367

GO:0005502 "11-cis retinal binding" evidence=ISO;ISS

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007601 "visual perception" evidence=IEA

GO:0007602 "phototransduction" evidence=ISO;IDA

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISO;IDA

GO:0009584 "detection of visible light" evidence=ISO;IDA

GO:0016021 "integral to membrane" evidence=TAS

GO:0016056 "rhodopsin mediated signaling pathway" evidence=ISO

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=ISO;ISS

GO:0048511 "rhythmic process" evidence=IEA

MGI|MGI:1353425 Opn4 "opsin 4 (melanopsin)" [Mus musculus (taxid:10090)]

 Score = 201 (75.8 bits), Expect = 2.8e-15, P = 2.8e-15
 Identities = 37/92 (40%), Positives = 60/92 (65%)

Query:     6 LRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACT 65
             LR  ++  +  +E ++AK A+ +  LFV SW PY+ VAL    G   +LTP ++ +PA  
Sbjct:   276 LRQRRQWQRLQSEWKMAKVALIVILLFVLSWAPYSTVALVAFAGYSHILTPYMSSVPAVI 335

Query:    66 CKAVACLDPYVYAISHPRYRLELSKRIPCLGI 97
              KA A  +P +YAI+HP+YR+ +++ +PCLG+
Sbjct:   336 AKASAIHNPIIYAITHPKYRVAIAQHLPCLGV 367

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005502 "11-cis retinal binding" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IMP

GO:0007601 "visual perception" evidence=IEA

GO:0007602 "phototransduction" evidence=ISO;IMP

GO:0008020 "G-protein coupled photoreceptor activity" evidence=ISO;IDA;IMP

GO:0009584 "detection of visible light" evidence=ISO;IMP

GO:0009881 "photoreceptor activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=TAS

GO:0016056 "rhodopsin mediated signaling pathway" evidence=IDA

GO:0018298 "protein-chromophore linkage" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0048511 "rhythmic process" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29404	OPS4_DROPS	No assigned EC number	0.6822	0.9145	0.2815	yes	N/A
P08255	OPS4_DROME	No assigned EC number	0.7087	0.8803	0.2724	yes	N/A
O61303	OPSUV_APIME	No assigned EC number	0.7	0.8547	0.2695	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	117
pfam00001	251	pfam00001, 7tm_1, 7 transmembrane receptor (rhodop	1e-09

>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family)

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 14  QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSL--LTPGLTMIPACTCKAVAC 71
            SS E + AK  + +  +FV  W PY +V L  +    S+  L P   +I        +C
Sbjct: 186 SSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLPTALLITLWLAYVNSC 245

Query: 72  LDPYVY 77
           L+P +Y
Sbjct: 246 LNPIIY 251

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	117
KOG4219|consensus	423		99.8
PHA03234	338	DNA packaging protein UL33; Provisional	99.78
KOG4220|consensus	503		99.75
PHA02834	323	chemokine receptor-like protein; Provisional	99.71
PHA03235	409	DNA packaging protein UL33; Provisional	99.71
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.66
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.6
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.27
KOG2087|consensus	363		98.76
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.74
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.33
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	98.0
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	97.58
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	97.51
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	97.4
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	97.04
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	97.02
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.02
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	96.79
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	95.91
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	95.76
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	95.58
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	94.34
KOG4193|consensus	610		92.68
KOG4564|consensus	473		92.27
PF03125	365	Sre: C. elegans Sre G protein-coupled chemorecepto	91.96
KOG2575|consensus	510		88.88
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	87.75
KOG3827|consensus	400		83.45
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	83.35

>KOG4219|consensus

Probab=99.80  E-value=5e-20  Score=127.60  Aligned_cols=84  Identities=17%  Similarity=0.342  Sum_probs=73.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CcchhHhHHHHHHHhhhccccchhheecChHHHHHHH
Q psy15241         13 GQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQS---LLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELS   89 (117)
Q Consensus        13 ~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~   89 (117)
                      ++.++++|+.||++++|+.|.+||+||++..++......-   .....++....+|+.+|+|+||+||++.|++||.+++
T Consensus       251 ~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~  330 (423)
T KOG4219|consen  251 EQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFR  330 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHh
Confidence            5778899999999999999999999999998877543321   2344677889999999999999999999999999999


Q ss_pred             hhcccCc
Q psy15241         90 KRIPCLG   96 (117)
Q Consensus        90 ~~~~~~~   96 (117)
                      +.++||.
T Consensus       331 ~~fr~cp  337 (423)
T KOG4219|consen  331 RAFRWCP  337 (423)
T ss_pred             hhhheee
Confidence            9999885

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.78  E-value=3.5e-19  Score=123.87  Aligned_cols=78  Identities=15%  Similarity=0.084  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CC----cchhHhHHHHHHHhhhccccchhheecChHHHHH
Q psy15241         16 SAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQ----SL----LTPGLTMIPACTCKAVACLDPYVYAISHPRYRLE   87 (117)
Q Consensus        16 ~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~----~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~   87 (117)
                      ++++|++|++++++++|++||+||++..++......    ..    .....+.++.+++++|||+||+||++.+++||++
T Consensus       230 ~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~  309 (338)
T PHA03234        230 KKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLR  309 (338)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHH
Confidence            567899999999999999999999998776543211    10    1123457889999999999999999999999999


Q ss_pred             HHhhcc
Q psy15241         88 LSKRIP   93 (117)
Q Consensus        88 ~~~~~~   93 (117)
                      +++.++
T Consensus       310 ~~~~~~  315 (338)
T PHA03234        310 FTACFQ  315 (338)
T ss_pred             HHHHHH
Confidence            887663

>KOG4220|consensus

Probab=99.75  E-value=3.4e-19  Score=123.97  Aligned_cols=85  Identities=22%  Similarity=0.434  Sum_probs=77.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhcc
Q psy15241         14 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIP   93 (117)
Q Consensus        14 ~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~   93 (117)
                      ...+|+|++|++..|+++|++||+||+++.++..+.... .+..+..+.-+|.|+||-+||+.|.+-|+.||+.+++++.
T Consensus       408 ~~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~C-iP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~  486 (503)
T KOG4220|consen  408 SLVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNC-IPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLL  486 (503)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhcccc-cchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhhe
Confidence            447899999999999999999999999999999887766 7889999999999999999999999999999999999997


Q ss_pred             cCcccC
Q psy15241         94 CLGIKE   99 (117)
Q Consensus        94 ~~~~~~   99 (117)
                      |....+
T Consensus       487 Cr~~~~  492 (503)
T KOG4220|consen  487 CRWKKR  492 (503)
T ss_pred             eeeccc
Confidence            665443

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.71  E-value=2.8e-18  Score=118.68  Aligned_cols=81  Identities=16%  Similarity=0.315  Sum_probs=63.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCc-------ch--hHhHHHHHHHhhhccccchhheecChHHHH
Q psy15241         16 SAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLL-------TP--GLTMIPACTCKAVACLDPYVYAISHPRYRL   86 (117)
Q Consensus        16 ~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~-------~~--~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~   86 (117)
                      +.++|..|++++++++|++||+||++..++..+......       ..  ....++.+++++||++||+||++.+++||+
T Consensus       222 ~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~  301 (323)
T PHA02834        222 KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKK  301 (323)
T ss_pred             cccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHH
Confidence            346788999999999999999999999877654321100       11  124578899999999999999999999999


Q ss_pred             HHHhhcccCc
Q psy15241         87 ELSKRIPCLG   96 (117)
Q Consensus        87 ~~~~~~~~~~   96 (117)
                      ++++++++..
T Consensus       302 ~~~~~~~~~~  311 (323)
T PHA02834        302 VFKNMFCRTN  311 (323)
T ss_pred             HHHHHHHhhh
Confidence            9999885543

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.71  E-value=1.1e-17  Score=118.84  Aligned_cols=79  Identities=13%  Similarity=0.183  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----C----CcchhHhHHHHHHHhhhccccchhheecChHHHHHH
Q psy15241         17 AEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQ----S----LLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLEL   88 (117)
Q Consensus        17 ~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~----~----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~   88 (117)
                      +++|..+++++++++|++||+||+++.++..+...    .    .....+..++.+++++||++||+||++.+++||+++
T Consensus       238 ~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~  317 (409)
T PHA03235        238 KRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRF  317 (409)
T ss_pred             cchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHH
Confidence            35677888899999999999999998887644221    1    012245678899999999999999999999999999


Q ss_pred             HhhcccC
Q psy15241         89 SKRIPCL   95 (117)
Q Consensus        89 ~~~~~~~   95 (117)
                      ++.+.+.
T Consensus       318 ~~~l~~~  324 (409)
T PHA03235        318 RQCFRGE  324 (409)
T ss_pred             HHHHhhh
Confidence            9888653

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.66  E-value=1.5e-16  Score=113.44  Aligned_cols=81  Identities=14%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----------C--cchhHhHHHHHHHhhhccccchhheecCh
Q psy15241         16 SAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQS-----------L--LTPGLTMIPACTCKAVACLDPYVYAISHP   82 (117)
Q Consensus        16 ~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~l~~~ns~~NPiiY~~~~~   82 (117)
                      ++++|.+|++++++++|++||+||++..++..+....           .  .......++..++++|+|+||+||++.++
T Consensus       306 ~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~  385 (417)
T PHA02638        306 SKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGE  385 (417)
T ss_pred             cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCH
Confidence            3467888999999999999999999998877543211           0  01234567889999999999999999999


Q ss_pred             HHHHHHHhhcccCc
Q psy15241         83 RYRLELSKRIPCLG   96 (117)
Q Consensus        83 ~fr~~~~~~~~~~~   96 (117)
                      +||+++++.+++..
T Consensus       386 ~FR~~l~~~~~~~~  399 (417)
T PHA02638        386 NFRMHLLMIFRNIF  399 (417)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999885544

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.60  E-value=1.6e-15  Score=105.18  Aligned_cols=85  Identities=16%  Similarity=0.280  Sum_probs=65.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-C----cchhHhHHHHHHHhhhccccchhheecChHHHH
Q psy15241         15 SSAEVRIAKTAITLCALFVASWTPYAVVALTGAFG---DQS-L----LTPGLTMIPACTCKAVACLDPYVYAISHPRYRL   86 (117)
Q Consensus        15 ~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~---~~~-~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~   86 (117)
                      .++++|+.|++.+++++|++||+|+.+..++....   ... .    ..+....++.+++.+|+++||+||++.+++||+
T Consensus       236 ~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~  315 (335)
T PHA03087        236 SKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNK  315 (335)
T ss_pred             chhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHH
Confidence            35678999999999999999999999877655321   111 0    112344678889999999999999999999999


Q ss_pred             HHHhhcccCcccC
Q psy15241         87 ELSKRIPCLGIKE   99 (117)
Q Consensus        87 ~~~~~~~~~~~~~   99 (117)
                      ++++.++....+.
T Consensus       316 ~~~~~~~~~~~~~  328 (335)
T PHA03087        316 HKKKSLKLMFTSS  328 (335)
T ss_pred             HHHHHHHHHhhcC
Confidence            9999886544333

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.27  E-value=1.4e-11  Score=80.97  Aligned_cols=66  Identities=27%  Similarity=0.516  Sum_probs=57.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-cchhHhHHHHHHHhhhccccchhh
Q psy15241         12 EGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSL-LTPGLTMIPACTCKAVACLDPYVY   77 (117)
Q Consensus        12 ~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiiY   77 (117)
                      ..+.++++|.++++.++++.|++||+|+.+..++.......+ .......++.++.++|+++||+||
T Consensus       191 ~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY  257 (257)
T PF00001_consen  191 RRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFYISYFLAFLNSCLNPIIY  257 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence            346678999999999999999999999999998888766553 355677899999999999999998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG2087|consensus

Probab=98.76  E-value=5.2e-11  Score=82.26  Aligned_cols=77  Identities=18%  Similarity=0.303  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhcccC
Q psy15241         19 VRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPCL   95 (117)
Q Consensus        19 ~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~   95 (117)
                      .+..|-++.+++.-++||.|..++.+...+...-........+..++.-+|||+||++|.+.++.||+.++.++...
T Consensus       231 ~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~  307 (363)
T KOG2087|consen  231 TSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKV  307 (363)
T ss_pred             hhhhhCeeEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhc
Confidence            46777778889999999999999988776655442222233566777889999999999999999999999988655

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.74  E-value=3e-08  Score=68.54  Aligned_cols=80  Identities=18%  Similarity=0.276  Sum_probs=66.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CcchhHhHHHHHHHhhhccccchhheecChHHHHHHHh
Q psy15241         15 SSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQS----LLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSK   90 (117)
Q Consensus        15 ~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~   90 (117)
                      .+++.+.++++..+.+.|+++=+|..+..++.......    ........+..++..+|+..|++||++.+.+||+.+++
T Consensus       234 ~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~  313 (318)
T PF10324_consen  234 SKKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKK  313 (318)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHH
Confidence            34677899999999999999999999999987753322    12234456788899999999999999999999999999


Q ss_pred             hccc
Q psy15241         91 RIPC   94 (117)
Q Consensus        91 ~~~~   94 (117)
                      +++|
T Consensus       314 ~f~~  317 (318)
T PF10324_consen  314 LFGC  317 (318)
T ss_pred             Hhcc
Confidence            9965

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.33  E-value=1.1e-06  Score=59.30  Aligned_cols=79  Identities=14%  Similarity=0.153  Sum_probs=63.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhc
Q psy15241         14 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQS-LLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRI   92 (117)
Q Consensus        14 ~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~   92 (117)
                      ..++++|+.|.+.+.++.|+.+|.=..+...+....... ...........+++.+|.+.|-++|.+.|+|||+++++++
T Consensus       178 ~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~  257 (257)
T PF10320_consen  178 NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF  257 (257)
T ss_pred             cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence            466789999999999999999999887776655433333 2222345667889999999999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=98.00  E-value=6e-05  Score=41.71  Aligned_cols=69  Identities=12%  Similarity=0.149  Sum_probs=51.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecCh
Q psy15241         14 QSSAEVRIAKTAITLCALFVASWT-PYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHP   82 (117)
Q Consensus        14 ~~~~~~k~~k~l~~iv~~f~icw~-P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~   82 (117)
                      ++++-+|.+|.+++==++|+++|+ |+.+-.+-............+..++.++..+|+++|-++|++.-+
T Consensus         3 ~r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~er   72 (76)
T PF11970_consen    3 RRKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRER   72 (76)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecc
Confidence            455667778888888889999999 977665543322222234566788999999999999999998754

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=97.58  E-value=0.0002  Score=49.83  Aligned_cols=77  Identities=16%  Similarity=0.181  Sum_probs=57.7

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHH
Q psy15241         10 QKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELS   89 (117)
Q Consensus        10 ~~~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~   89 (117)
                      .+....++++++.-...++.+...+.++=|......       ..++.+..+..+.=-+++..+|+||...|+..|++++
T Consensus       230 ~s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~-------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~  302 (313)
T PF10321_consen  230 TSSQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQFF-------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVL  302 (313)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeeee-------cccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHH
Confidence            344455667777777666766667766665444432       1356677788888899999999999999999999999


Q ss_pred             hhcc
Q psy15241         90 KRIP   93 (117)
Q Consensus        90 ~~~~   93 (117)
                      ++++
T Consensus       303 k~~~  306 (313)
T PF10321_consen  303 KMLG  306 (313)
T ss_pred             HHHc
Confidence            9885

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.51  E-value=0.00086  Score=46.01  Aligned_cols=81  Identities=15%  Similarity=0.228  Sum_probs=52.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhH--HHHHHHhhhccccchhheecChHHHHHH
Q psy15241         11 KEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM--IPACTCKAVACLDPYVYAISHPRYRLEL   88 (117)
Q Consensus        11 ~~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~ns~~NPiiY~~~~~~fr~~~   88 (117)
                      ..+..++|.+.+.+..+.+.++++. +=|++...+.......  ....+.  +-..+.-..|.+||+.-.+.|+++|+.+
T Consensus       201 ~s~~~~rE~~L~~~~~i~~~a~~~~-~~~~~~~~~~~~~~~~--~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~  277 (283)
T PF10323_consen  201 SSRSRRREIRLAIQVFILFCAFFVI-LVYYIFSNYFAQNFNT--DPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQV  277 (283)
T ss_pred             hhhhhhHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcccc--hHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHH
Confidence            4456677888777776555554433 3334443333332222  223333  5566677788899999999999999999


Q ss_pred             Hhhccc
Q psy15241         89 SKRIPC   94 (117)
Q Consensus        89 ~~~~~~   94 (117)
                      ++.++|
T Consensus       278 ~~~~~~  283 (283)
T PF10323_consen  278 RRMLKC  283 (283)
T ss_pred             HHHcCC
Confidence            998876

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=97.40  E-value=0.002  Score=44.66  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=59.9

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHh
Q psy15241         11 KEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSK   90 (117)
Q Consensus        11 ~~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~   90 (117)
                      ++.+.++..|+.|++...++.|+++++-..+.. ......   .......+...+.++.+...|+|--+.|+++|+++++
T Consensus       222 ~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~  297 (303)
T PF05296_consen  222 RDPSTEAHIRAIKTMISFLILYIIYFLSLILSF-LSFFFP---ENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLK  297 (303)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhc---cccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            456778888999998877777777665533322 222122   2345567888899999999999999999999999999


Q ss_pred             hcccC
Q psy15241         91 RIPCL   95 (117)
Q Consensus        91 ~~~~~   95 (117)
                      .+++.
T Consensus       298 il~~~  302 (303)
T PF05296_consen  298 ILWCL  302 (303)
T ss_pred             HHhhc
Confidence            88654

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.04  E-value=0.0055  Score=42.17  Aligned_cols=78  Identities=15%  Similarity=0.162  Sum_probs=62.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHh
Q psy15241         11 KEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSK   90 (117)
Q Consensus        11 ~~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~   90 (117)
                      +++.++..++.+|.+.+-...=.++..|-....++.......  .+...++...++.+-+.+||+++.+.-+.+|+.++|
T Consensus       215 S~~tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~--~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r  292 (292)
T PF10317_consen  215 SERTKSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYE--HPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR  292 (292)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence            455566677888888888888889999888777776665544  566667777788889999999999999999999875

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.02  E-value=0.0059  Score=41.53  Aligned_cols=79  Identities=14%  Similarity=0.116  Sum_probs=57.0

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHH
Q psy15241          8 SGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLE   87 (117)
Q Consensus         8 ~~~~~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~   87 (117)
                      ..+.++++++|.+..+..++--..|++.++=|.....+.   .   .....+..+.+.-.+.-++|++|+.+.|+++|+.
T Consensus       195 ~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~---~---~~~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~  268 (274)
T PF10328_consen  195 SSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS---S---NRWWQFFCTTFSWVLVHALDGLIMLIFNSEIRRK  268 (274)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c---ccHHHHHHHHHHHHHHHHhcceeEeEEcHHHHHH
Confidence            345667788899999999999999999998887774431   1   1223333333334455568999999999999999


Q ss_pred             HHhhc
Q psy15241         88 LSKRI   92 (117)
Q Consensus        88 ~~~~~   92 (117)
                      +++..
T Consensus       269 ~~~~~  273 (274)
T PF10328_consen  269 IRKKK  273 (274)
T ss_pred             HHhcc
Confidence            88753

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.02  E-value=0.0062  Score=42.35  Aligned_cols=67  Identities=13%  Similarity=0.227  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhccc
Q psy15241         25 AITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPC   94 (117)
Q Consensus        25 l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~   94 (117)
                      +..=.++|++||+|-.+..+.+.+++   .+..+..+-..++.+-..+|.++|.+-++-.++.+...+.+
T Consensus       204 L~~Yp~ifiicw~fa~INRI~~~~~~---~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~  270 (303)
T PF05462_consen  204 LVNYPLIFIICWIFATINRIYNFIGK---NPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILC  270 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34567889999999999999888753   23455556667788888999999999999988888776643

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.79  E-value=0.0025  Score=43.43  Aligned_cols=83  Identities=23%  Similarity=0.245  Sum_probs=61.6

Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecCh
Q psy15241          3 VESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHP   82 (117)
Q Consensus         3 ~~~~~~~~~~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~   82 (117)
                      +++.++.....+...|.|+++++.+.|..|+..|..-.++.++......   .+.+..+..+++.+-+.+-|++---.++
T Consensus       181 VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~---~~~~~~~~~~ls~cfptisPfvLI~~d~  257 (265)
T PF03402_consen  181 VQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKN---SPWLLNISVFLSSCFPTISPFVLISSDK  257 (265)
T ss_pred             cccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcC---CcceeEHHHHHhHHhHhhChHHhhccCc
Confidence            4455555555666789999999999999999999998877665443322   2344567778888889999999888887


Q ss_pred             HHHHHH
Q psy15241         83 RYRLEL   88 (117)
Q Consensus        83 ~fr~~~   88 (117)
                      +..+-+
T Consensus       258 ~i~~~~  263 (265)
T PF03402_consen  258 RIIKFL  263 (265)
T ss_pred             hHHHHh
Confidence            766544

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=95.91  E-value=0.031  Score=39.89  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15241         21 IAKTAITLCALFVASWTPYAVVALTG   46 (117)
Q Consensus        21 ~~k~l~~iv~~f~icw~P~~~~~~~~   46 (117)
                      +-+-.+.|+++|++||+|-.+--++.
T Consensus       242 IK~kFf~I~lVF~iCWlpNIINg~LL  267 (405)
T PF02101_consen  242 IKIKFFKIMLVFYICWLPNIINGSLL  267 (405)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhHHHH
Confidence            33445678999999999987665533

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.76  E-value=0.029  Score=38.96  Aligned_cols=78  Identities=13%  Similarity=0.068  Sum_probs=61.0

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHH
Q psy15241          8 SGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLE   87 (117)
Q Consensus         8 ~~~~~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~   87 (117)
                      .+-+.+..++.|++.+-+.+-.++-.+|-+|-.+..........  .......++.....+.|.+|-++--+.++.||+-
T Consensus       225 ~~iS~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~~--~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f  302 (303)
T PF10327_consen  225 KKISKQTYQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEFE--DAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF  302 (303)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecCC--CcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence            33345566778899999998888889999998887765554432  2456667778888999999999999999999973

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.58  E-value=0.078  Score=36.48  Aligned_cols=83  Identities=14%  Similarity=0.151  Sum_probs=60.4

Q ss_pred             cccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHH
Q psy15241          9 GQKEGQSSAEVRIAKTAITLCALF-VASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLE   87 (117)
Q Consensus         9 ~~~~~~~~~~~k~~k~l~~iv~~f-~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~   87 (117)
                      +.+++..+..+|..+.+.+-+.+. ++.-.|.....+......   .....-+++.++....+.+.-++..+.++.+|+.
T Consensus       219 ~~S~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~---~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~  295 (302)
T PF10318_consen  219 TMSKKTRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGY---YNQALNNISFIIISLHGIASTIVMILVHKPYRKF  295 (302)
T ss_pred             hhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---cccccchHHHHHHHhccHHHHHHHhhccHHHHHH
Confidence            334556666778888777755544 555668777765444332   2345567778888999999999999999999999


Q ss_pred             HHhhccc
Q psy15241         88 LSKRIPC   94 (117)
Q Consensus        88 ~~~~~~~   94 (117)
                      ++++++|
T Consensus       296 ~~~~~~~  302 (302)
T PF10318_consen  296 LLSLFRC  302 (302)
T ss_pred             HHHHhcC
Confidence            9999865

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.34  E-value=0.0093  Score=41.14  Aligned_cols=76  Identities=14%  Similarity=0.164  Sum_probs=53.8

Q ss_pred             cccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHH
Q psy15241         11 KEGQSSAEVRIAKTAIT-LCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELS   89 (117)
Q Consensus        11 ~~~~~~~~~k~~k~l~~-iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~   89 (117)
                      +.+.++.+++..+.+++ .++-.++.+.|..+..+.-.++-..   .....+...+..+-+++||++--+.-+++|++++
T Consensus       231 S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~~---~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~  307 (307)
T PF10326_consen  231 SSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGIDL---GFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK  307 (307)
T ss_pred             ChhhHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCCC---CccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence            44455667777777776 4456778889988776654433222   2334556667888999999999999999999874

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>KOG4193|consensus

Probab=92.68  E-value=1.6  Score=33.46  Aligned_cols=76  Identities=12%  Similarity=0.055  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhcccCcccC
Q psy15241         20 RIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKE   99 (117)
Q Consensus        20 k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~   99 (117)
                      +..+.......++-+.|.=-....+    .+   ....+.+++.++-.+-.+.=-++|++..++.|++.++.++|+....
T Consensus       514 ~~~~~~l~L~~lLGlTW~fgi~s~~----~~---~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~~~  586 (610)
T KOG4193|consen  514 SLIRSALALLFLLGLTWIFGIFSWL----PG---TSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRGDS  586 (610)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh----cc---cchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCCCC
Confidence            4455555555556666653222211    11   2344556666666666666678899999999999999887554444


Q ss_pred             CCc
Q psy15241        100 KEP  102 (117)
Q Consensus       100 ~~~  102 (117)
                      ...
T Consensus       587 ~~~  589 (610)
T KOG4193|consen  587 SAS  589 (610)
T ss_pred             CCC
Confidence            333

>KOG4564|consensus

Probab=92.27  E-value=0.15  Score=37.66  Aligned_cols=83  Identities=14%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-cchhHhHHHHHHHhhhccccchhheecChH
Q psy15241          5 SLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSL-LTPGLTMIPACTCKAVACLDPYVYAISHPR   83 (117)
Q Consensus         5 ~~~~~~~~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~   83 (117)
                      ++|..+ .......+|++|-..+.+-+|-|-++.+       .+..... .......+..+|...-..+=.++|+|.|++
T Consensus       337 KLr~~~-~~~~~~y~K~vKaTLvLIPLfGI~~ilf-------~~~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~E  408 (473)
T KOG4564|consen  337 KLRASN-ASETDQYRKLVKATLVLIPLFGIHYILF-------AFRPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGE  408 (473)
T ss_pred             HhcCcc-ccchHHHHHHHHHHHHHHHHcCCeeEEE-------EecCchHHHHHHHHHHHHHHHhccchheehheeecCHH
Confidence            444442 2233347777777666655554432221       1111111 112233566777888888889999999999


Q ss_pred             HHHHHHhhcccC
Q psy15241         84 YRLELSKRIPCL   95 (117)
Q Consensus        84 fr~~~~~~~~~~   95 (117)
                      .|.++|+.+...
T Consensus       409 Vq~elrr~W~r~  420 (473)
T KOG4564|consen  409 VQAELRRKWSRW  420 (473)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988554

>PF03125 Sre: C

Probab=91.96  E-value=2.4  Score=30.26  Aligned_cols=42  Identities=19%  Similarity=0.104  Sum_probs=32.5

Q ss_pred             chhHhHHHHHHHhhhccccchhheecChHHHHHHHhhcccCc
Q psy15241         55 TPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLG   96 (117)
Q Consensus        55 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~   96 (117)
                      ......+......+++.+=|.+-....+..|+++++.++...
T Consensus       282 ~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~  323 (365)
T PF03125_consen  282 RTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIR  323 (365)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhh
Confidence            345556777888888888787777888999999999886543

elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>KOG2575|consensus

Probab=88.88  E-value=0.7  Score=33.70  Aligned_cols=26  Identities=31%  Similarity=0.611  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15241         17 AEVRIAKTAITLCALFVASWTPYAVV   42 (117)
Q Consensus        17 ~~~k~~k~l~~iv~~f~icw~P~~~~   42 (117)
                      .-.+++++-+++++.|+++|.|+...
T Consensus       253 ~f~ri~~ia~~Vv~TF~iiw~P~~~~  278 (510)
T KOG2575|consen  253 SFARIIKIALAVVGTFVIIWLPFLLS  278 (510)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35688899999999999999999744

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=87.75  E-value=2.3  Score=29.86  Aligned_cols=75  Identities=17%  Similarity=0.228  Sum_probs=53.2

Q ss_pred             cccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHH
Q psy15241         11 KEGQSSAEVRIAKTAITL-CALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLE   87 (117)
Q Consensus        11 ~~~~~~~~~k~~k~l~~i-v~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~   87 (117)
                      +++..+-.++..|.+.+- ++--++|..|-.+.+..-.++ .+ ......+++......=+++||+.-.+.-+.||+.
T Consensus       234 S~~T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~-i~-~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r  309 (310)
T PF10319_consen  234 SKKTKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG-ID-LGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR  309 (310)
T ss_pred             CHhHHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc-CC-hhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence            455566677788877764 445688999988876544433 22 4566677777777777899998888888888864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

>KOG3827|consensus

Probab=83.45  E-value=1.2  Score=32.07  Aligned_cols=61  Identities=15%  Similarity=0.239  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchh-HhHHHHHHHhhhccccchhheec
Q psy15241         20 RIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPG-LTMIPACTCKAVACLDPYVYAIS   80 (117)
Q Consensus        20 k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ns~~NPiiY~~~   80 (117)
                      |--.++.+....|++.|+-|.+++.+..+.+....... -.....+...+++....++|++-
T Consensus        61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiE  122 (400)
T KOG3827|consen   61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIE  122 (400)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeee
Confidence            44457778889999999999988877666554421111 12234456666666667776654

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=83.35  E-value=7.3  Score=26.24  Aligned_cols=75  Identities=12%  Similarity=0.072  Sum_probs=37.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHH
Q psy15241         12 EGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLE   87 (117)
Q Consensus        12 ~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~   87 (117)
                      .+.++.|++..+..++..+++.+.-+.-.+... ...............+..+..=.-+...|++-.+.+++.|+.
T Consensus       200 ~~~~~~er~L~~is~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~  274 (275)
T PF02118_consen  200 KRIKSVERNLTIISFIISFVQLLIAIWQIINSF-AFFFDFLPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ  274 (275)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence            344456777776666655555544443333211 111111111222222222222222445699999999999985

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	117
2z73_A	448	Crystal Structure Of Squid Rhodopsin Length = 448		9e-16
2ziy_A	372	Crystal Structure Of Squid Rhodopsin Length = 372		1e-15

>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 448

Iteration: 1
 Score = 78.6 bits (192), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           +N + LR  Q    ++AE+R+AK +I + + F+ SW+PYAVVAL   FG    +TP    
Sbjct: 241 LNAKELRKAQ--AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQ 298
Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIP 93
           +P    KA A  +P +Y++SHP++R  +S+  P
Sbjct: 299 LPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 331

>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin Length = 372

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           +N + LR  Q    ++AE+R+AK +I + + F+ SW+PYAVVAL   FG    +TP    
Sbjct: 240 LNAKELRKAQ--AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQ 297
Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIP 93
           +P    KA A  +P +Y++SHP++R  +S+  P
Sbjct: 298 LPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 330

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	117
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	7e-33
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	2e-32
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	2e-08
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	7e-08
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	2e-06
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	1e-04
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	3e-04
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	3e-04

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score =  118 bits (296), Expect = 7e-33
 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 2/115 (1%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
           +N + LR  Q    ++AE+R+AK +I + + F+ SW+PYAVVAL   FG    +TP    
Sbjct: 241 LNAKELRKAQA--GANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQ 298

Query: 61  IPACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATT 115
           +P    KA A  +P +Y++SHP++R  +S+  P +    +  +KET   +   T 
Sbjct: 299 LPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETEDDKDAETE 353

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349

 Score =  114 bits (288), Expect = 2e-32
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 2   NVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMI 61
              + +      Q  AE  + +  I +   F+  W PYA VA        S   P    I
Sbjct: 233 EAAAQQQESATTQK-AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTI 291

Query: 62  PACTCKAVACLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATT 115
           PA   K  A  +P +Y + + ++R  +   + C      + E  T  ++TE + 
Sbjct: 292 PAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQ 345

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 2/91 (2%)

Query: 14  QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVA--C 71
           +     RI +  + + A+F+  WTP  +  +  A       T        C        C
Sbjct: 374 KDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSC 433

Query: 72  LDPYVYAISHPRYRLELSKRIPCLGIKEKEP 102
           L+P +YA     ++    +         ++P
Sbjct: 434 LNPVLYAFLDENFKRCFREFCIPTSSTIEQP 464

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 3/108 (2%)

Query: 7   RSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMI-PACT 65
            S +   Q SA+ ++ K  I +   F   W P+ +  L         L   +  +  A  
Sbjct: 232 SSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIM 291

Query: 66  CKAVA--CLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQT 111
             A++    +P +Y   + R+RL       C         +      T
Sbjct: 292 WLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKST 339

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 14  QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPG-------LTMIPACTC 66
           +   + +  KT + L   F A W PY +     +F    ++  G          I     
Sbjct: 404 KGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEA 463

Query: 67  KAVA--CLDPYVYAISHPRYRLELSKRIPCLGIKE 99
            A    CL+P +YA    +++      +      E
Sbjct: 464 LAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLE 498

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 1/88 (1%)

Query: 18  EVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAV-ACLDPYV 76
           EV  AK+   +  LF   W P  ++     F       P   M  A       + ++P++
Sbjct: 349 EVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFI 408

Query: 77  YAISHPRYRLELSKRIPCLGIKEKEPEK 104
           YA     +R    K I    ++++EP K
Sbjct: 409 YAYRIREFRQTFRKIIRSHVLRQQEPFK 436

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 3/106 (2%)

Query: 1   MNVESLRSGQKEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTM 60
               +            EV  AK+   +  LF   W P  ++     F         L +
Sbjct: 373 TTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCP-DCSHAPLWL 431

Query: 61  IPACTCKAVA--CLDPYVYAISHPRYRLELSKRIPCLGIKEKEPEK 104
           +      +     ++P++YA     +R    K I    ++++EP K
Sbjct: 432 MYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK 477

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	117
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.89
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.88
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.84
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.83
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.83
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.82
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.82
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.82
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.81
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.81
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.81
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.81
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.8
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.78
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.77
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.75
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.73
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.73
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	99.33
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	98.76

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.89  E-value=1.9e-24  Score=155.41  Aligned_cols=86  Identities=21%  Similarity=0.333  Sum_probs=64.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcch-------hHhHHHHHHHhhhccccchhheecChHH
Q psy15241         12 EGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTP-------GLTMIPACTCKAVACLDPYVYAISHPRY   84 (117)
Q Consensus        12 ~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~ns~~NPiiY~~~~~~f   84 (117)
                      ....++|+|++||+++|+++|++||+||+++.++..+........       .++.++.+|+|+||++||+||++.|++|
T Consensus       398 ~~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~F  477 (510)
T 4grv_A          398 SGSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANF  477 (510)
T ss_dssp             TSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            445678999999999999999999999999999887655442222       3456788999999999999999999999


Q ss_pred             HHHHHhhcccCcc
Q psy15241         85 RLELSKRIPCLGI   97 (117)
Q Consensus        85 r~~~~~~~~~~~~   97 (117)
                      |++|+++++|+|.
T Consensus       478 R~aFk~iL~C~C~  490 (510)
T 4grv_A          478 RQVFLSTLACLCP  490 (510)
T ss_dssp             CCC----------
T ss_pred             HHHHHHHHhhcCC
Confidence            9999999977653

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.88  E-value=3.2e-22  Score=143.35  Aligned_cols=82  Identities=15%  Similarity=0.289  Sum_probs=70.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhccc
Q psy15241         15 SSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPC   94 (117)
Q Consensus        15 ~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~   94 (117)
                      .++|+|++|++++++++|++||+||+++.++..+.... .+..++.++.+|+++||++||+||++ +++||++++++++|
T Consensus       400 ~~~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~~-~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~~  477 (500)
T 2rh1_A          400 CLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNL-IRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCL  477 (500)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTS-SCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHhh
Confidence            45799999999999999999999999999988876433 56778889999999999999999996 99999999999976


Q ss_pred             Cccc
Q psy15241         95 LGIK   98 (117)
Q Consensus        95 ~~~~   98 (117)
                      +..+
T Consensus       478 ~~~~  481 (500)
T 2rh1_A          478 RRSS  481 (500)
T ss_dssp             ----
T ss_pred             hccC
Confidence            5543

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.84  E-value=7.7e-21  Score=136.87  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=71.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-cchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhc
Q psy15241         14 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSL-LTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRI   92 (117)
Q Consensus        14 ~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~   92 (117)
                      +.++++|++|++++++++|++||+||+++.++..+..... .......++.+++++||++||+||++.+++||+++++++
T Consensus       412 ~~~~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~  491 (520)
T 3v2y_A          412 RSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIM  491 (520)
T ss_dssp             STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTCSTTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence            4456999999999999999999999999999887665432 234456778889999999999999999999999999999


Q ss_pred             ccCcccC
Q psy15241         93 PCLGIKE   99 (117)
Q Consensus        93 ~~~~~~~   99 (117)
                      ++.....
T Consensus       492 ~~~~~~~  498 (520)
T 3v2y_A          492 GRPLEVL  498 (520)
T ss_dssp             CSCC---
T ss_pred             HHhcccc
Confidence            7665443

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.83  E-value=5.9e-20  Score=125.22  Aligned_cols=86  Identities=24%  Similarity=0.367  Sum_probs=73.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhc
Q psy15241         13 GQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRI   92 (117)
Q Consensus        13 ~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~   92 (117)
                      .+.++++|++|++++++++|++||+|+.+..++...............++.+++++|+++||+||++.+++||+++++++
T Consensus       243 ~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~  322 (349)
T 1u19_A          243 TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL  322 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheecCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence            34567889999999999999999999999988777665444556677888999999999999999999999999999999


Q ss_pred             ccCccc
Q psy15241         93 PCLGIK   98 (117)
Q Consensus        93 ~~~~~~   98 (117)
                      +|...+
T Consensus       323 ~c~~~~  328 (349)
T 1u19_A          323 CCGKNP  328 (349)
T ss_dssp             TSSCCC
T ss_pred             cccCCC
Confidence            765433

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.83  E-value=3.4e-21  Score=136.50  Aligned_cols=87  Identities=13%  Similarity=0.206  Sum_probs=60.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----cchhHhHHHHHHHhhhccccchhheecChHHHHHHH
Q psy15241         14 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSL----LTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELS   89 (117)
Q Consensus        14 ~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~   89 (117)
                      +.++++|++||+++++++|++||+||+++.++..+.....    ....++.++.+|+++||++||+||++.+++||++++
T Consensus       381 ~~~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~  460 (484)
T 3vw7_A          381 NRSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVY  460 (484)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC-----
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHH
Confidence            5567899999999999999999999999999887554332    222556788999999999999999999999999999


Q ss_pred             hhcccCcccCC
Q psy15241         90 KRIPCLGIKEK  100 (117)
Q Consensus        90 ~~~~~~~~~~~  100 (117)
                      ++++|.+.++.
T Consensus       461 ~ll~~~~~~~~  471 (484)
T 3vw7_A          461 SILCCKESSDP  471 (484)
T ss_dssp             -----------
T ss_pred             HHHhhccCCCc
Confidence            99876654443

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.82  E-value=1e-20  Score=133.87  Aligned_cols=90  Identities=20%  Similarity=0.343  Sum_probs=75.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhc
Q psy15241         14 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQS-LLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRI   92 (117)
Q Consensus        14 ~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~   92 (117)
                      ..++++|++|++++++++|++||+||.++.++..+.... .....+..++.+++++|+++||+||++.+++||+++++++
T Consensus       386 ~~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~  465 (488)
T 3eml_A          386 TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII  465 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHH
Confidence            456899999999999999999999999999988876543 3456677899999999999999999999999999999999


Q ss_pred             ccCcccCCCcc
Q psy15241         93 PCLGIKEKEPE  103 (117)
Q Consensus        93 ~~~~~~~~~~~  103 (117)
                      ++++.+.....
T Consensus       466 ~~~~~~~~~~~  476 (488)
T 3eml_A          466 RSHVLRQQEPF  476 (488)
T ss_dssp             HHTTSCC----
T ss_pred             hhcccccCCCC
Confidence            87665554433

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.82  E-value=1.7e-20  Score=131.72  Aligned_cols=90  Identities=20%  Similarity=0.343  Sum_probs=73.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhc
Q psy15241         14 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQS-LLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRI   92 (117)
Q Consensus        14 ~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~   92 (117)
                      ..++++|++|++++++++|++||+|+.++.++..+.... .....+..++.+++++|+++||+||++.+++||+++++++
T Consensus       345 ~~~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~  424 (447)
T 4eiy_A          345 TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII  424 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHH
Confidence            456789999999999999999999999999988876542 3455677889999999999999999999999999999999


Q ss_pred             ccCcccCCCcc
Q psy15241         93 PCLGIKEKEPE  103 (117)
Q Consensus        93 ~~~~~~~~~~~  103 (117)
                      +++.++.....
T Consensus       425 ~~~~~r~~~~~  435 (447)
T 4eiy_A          425 RSHVLRQQEPF  435 (447)
T ss_dssp             HHTC-------
T ss_pred             HHHHhccCCCC
Confidence            87765554433

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.82  E-value=4.4e-20  Score=130.72  Aligned_cols=83  Identities=14%  Similarity=0.299  Sum_probs=73.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhcc
Q psy15241         14 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIP   93 (117)
Q Consensus        14 ~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~   93 (117)
                      ..++++|++|++++++++|++||+||.+..++..+.........++.++.+++++|+++||+||++.+++||++++++++
T Consensus       392 ~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~  471 (481)
T 3pbl_A          392 VPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILS  471 (481)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
T ss_pred             ccchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHh
Confidence            44579999999999999999999999999998887665556677888999999999999999999999999999999997


Q ss_pred             cCc
Q psy15241         94 CLG   96 (117)
Q Consensus        94 ~~~   96 (117)
                      |+.
T Consensus       472 c~~  474 (481)
T 3pbl_A          472 CGR  474 (481)
T ss_dssp             C--
T ss_pred             ccC
Confidence            554

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.81  E-value=3.5e-20  Score=130.68  Aligned_cols=84  Identities=19%  Similarity=0.440  Sum_probs=71.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhcc
Q psy15241         14 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIP   93 (117)
Q Consensus        14 ~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~   93 (117)
                      ..++++|++|++++++++|++||+||.++.++..+.... ....++.++.+++++|+++||+||++.+++||++++++++
T Consensus       379 ~~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~-~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~  457 (467)
T 3uon_A          379 PPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPC-IPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLM  457 (467)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTT-SCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHh
Confidence            345789999999999999999999999999988876644 5677888999999999999999999999999999999997


Q ss_pred             cCccc
Q psy15241         94 CLGIK   98 (117)
Q Consensus        94 ~~~~~   98 (117)
                      |++.+
T Consensus       458 c~~~~  462 (467)
T 3uon_A          458 CHYKN  462 (467)
T ss_dssp             -----
T ss_pred             hhccC
Confidence            66543

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.81  E-value=5.2e-20  Score=123.71  Aligned_cols=85  Identities=16%  Similarity=0.319  Sum_probs=71.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcc---------hhHhHHHHHHHhhhccccchhheecC
Q psy15241         11 KEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLT---------PGLTMIPACTCKAVACLDPYVYAISH   81 (117)
Q Consensus        11 ~~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~~ns~~NPiiY~~~~   81 (117)
                      .+...++++|++|++.+++++|++||+|+++..++..+.......         .....++.+++++||++||+||++.+
T Consensus       202 ~~~~~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~  281 (296)
T 2lnl_A          202 FKAHMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIG  281 (296)
T ss_dssp             SSCCCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHC
T ss_pred             HHHhhhhhhhHHHHHHHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            344567789999999999999999999999999988776544221         13456788999999999999999999


Q ss_pred             hHHHHHHHhhcccC
Q psy15241         82 PRYRLELSKRIPCL   95 (117)
Q Consensus        82 ~~fr~~~~~~~~~~   95 (117)
                      ++||++++++++|.
T Consensus       282 ~~fR~~~~~ll~cr  295 (296)
T 2lnl_A          282 QNFRHGFLKILAMH  295 (296)
T ss_dssp             SHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999999764

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.81  E-value=3.9e-19  Score=122.12  Aligned_cols=86  Identities=17%  Similarity=0.340  Sum_probs=72.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CcchhHhHHHHHHHhhhccccchhheecChHHHHHHHh
Q psy15241         14 QSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQS---LLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSK   90 (117)
Q Consensus        14 ~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~   90 (117)
                      +.++++|++|++++++++|++||+|+.+..++..+....   ......+.+..+++++|+++||+||++.+++||+++++
T Consensus       239 ~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~  318 (364)
T 2ks9_A          239 QVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKH  318 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            456789999999999999999999999998887765432   12345667788899999999999999999999999999


Q ss_pred             hcccCcccC
Q psy15241         91 RIPCLGIKE   99 (117)
Q Consensus        91 ~~~~~~~~~   99 (117)
                      +++|+.+.+
T Consensus       319 ~~~~~~~~~  327 (364)
T 2ks9_A          319 AFRCCPFIS  327 (364)
T ss_dssp             HHSSSCCCC
T ss_pred             HHhhcCCCC
Confidence            998765443

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.81  E-value=7.7e-20  Score=128.50  Aligned_cols=85  Identities=18%  Similarity=0.286  Sum_probs=72.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhc
Q psy15241         13 GQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRI   92 (117)
Q Consensus        13 ~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~   92 (117)
                      .+.++++|++|++++++++|++||+||.+..++..+.... ....+..++.+++++|+++||+||++.+++||+++++++
T Consensus       363 ~~~~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~-~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll  441 (452)
T 3rze_A          363 LHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNC-CNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRIL  441 (452)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-SCTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHH
Confidence            3556899999999999999999999999999988775554 456677899999999999999999999999999999999


Q ss_pred             ccCccc
Q psy15241         93 PCLGIK   98 (117)
Q Consensus        93 ~~~~~~   98 (117)
                      +|++..
T Consensus       442 ~~~~~~  447 (452)
T 3rze_A          442 HIRSGE  447 (452)
T ss_dssp             TC----
T ss_pred             Hhcccc
Confidence            776543

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.80  E-value=1.2e-19  Score=127.71  Aligned_cols=82  Identities=16%  Similarity=0.264  Sum_probs=69.6

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CcchhHhHHHHHHHhhhccccchhheecChHHHHHHH
Q psy15241         12 EGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQS--LLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELS   89 (117)
Q Consensus        12 ~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~   89 (117)
                      ..+.++|+|++|++++++++|++||+||.++.++..+....  ......+.++.+++++|+++||+||++.+++||++++
T Consensus       372 ~~~~~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~  451 (464)
T 4dkl_A          372 YEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFR  451 (464)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHH
Confidence            44567889999999999999999999999999988775533  1233455788889999999999999999999999999


Q ss_pred             hhcc
Q psy15241         90 KRIP   93 (117)
Q Consensus        90 ~~~~   93 (117)
                      ++++
T Consensus       452 ~lc~  455 (464)
T 4dkl_A          452 EFCI  455 (464)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            9753

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.78  E-value=7.9e-19  Score=117.92  Aligned_cols=79  Identities=18%  Similarity=0.330  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhcccC
Q psy15241         16 SAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPCL   95 (117)
Q Consensus        16 ~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~   95 (117)
                      ++++|+++++++++++|++||+|+.+..++..+.... .......+..+++++||++||+||+ .+++||++++++++|.
T Consensus       225 ~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~  302 (315)
T 4amj_A          225 MREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL-VPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFP  302 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-SCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC--
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCC
Confidence            4788999999999999999999999999988776544 4566778888999999999999999 8999999999999654


Q ss_pred             c
Q psy15241         96 G   96 (117)
Q Consensus        96 ~   96 (117)
                      .
T Consensus       303 ~  303 (315)
T 4amj_A          303 R  303 (315)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.77  E-value=1e-18  Score=125.46  Aligned_cols=81  Identities=15%  Similarity=0.301  Sum_probs=68.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhccc
Q psy15241         15 SSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPC   94 (117)
Q Consensus        15 ~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~   94 (117)
                      .++++|+++++++++++|++||+|+.++.++..+.... ....+..++.+++++|+++||+||+ .+++||++++++++|
T Consensus       414 ~~~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~~~~-~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~  491 (514)
T 3sn6_R          414 CLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNL-IRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCL  491 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTS-SCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCc
Confidence            35789999999999999999999999999888775433 4567778899999999999999999 899999999999865


Q ss_pred             Ccc
Q psy15241         95 LGI   97 (117)
Q Consensus        95 ~~~   97 (117)
                      ...
T Consensus       492 ~~~  494 (514)
T 3sn6_R          492 RRS  494 (514)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            543

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.75  E-value=1.2e-19  Score=129.16  Aligned_cols=86  Identities=17%  Similarity=0.252  Sum_probs=70.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------CcchhHhHHHHHHHhhhccccchhheecChH
Q psy15241         13 GQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQS---------LLTPGLTMIPACTCKAVACLDPYVYAISHPR   83 (117)
Q Consensus        13 ~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~   83 (117)
                      .+.++++|++|++++++++|++||+||.++.++..+....         .....++.++.+|+++|+++||+||++.+++
T Consensus       403 ~~~~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~  482 (502)
T 3odu_A          403 SKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAK  482 (502)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCC
T ss_pred             hhhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHH
Confidence            4566789999999999999999999999998877653211         1223445688999999999999999999999


Q ss_pred             HHHHHHhhcccCccc
Q psy15241         84 YRLELSKRIPCLGIK   98 (117)
Q Consensus        84 fr~~~~~~~~~~~~~   98 (117)
                      ||++++++++|+.+.
T Consensus       483 fR~~~~~ll~~~~~~  497 (502)
T 3odu_A          483 FKTSAQHALTSGRPL  497 (502)
T ss_dssp             CCCCHHHHHSSCSSC
T ss_pred             HHHHHHHHhccCCch
Confidence            999999999766543

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.73  E-value=1.2e-17  Score=117.73  Aligned_cols=78  Identities=41%  Similarity=0.761  Sum_probs=68.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHhhcc
Q psy15241         16 SAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIP   93 (117)
Q Consensus        16 ~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~   93 (117)
                      ++++|++|++++++++|++||+|+.++.++..+............+..+++++|+++||+||++.+++||++++++++
T Consensus       254 ~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~  331 (448)
T 2z73_A          254 NAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP  331 (448)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCG
T ss_pred             cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHH
Confidence            458899999999999999999999999888877554334456667888999999999999999999999999999885

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=99.33  E-value=8.4e-13  Score=63.87  Aligned_cols=38  Identities=16%  Similarity=0.369  Sum_probs=34.0

Q ss_pred             HhHHHHHHHhhhccccchhheecChHHHHHHHhhcccC
Q psy15241         58 LTMIPACTCKAVACLDPYVYAISHPRYRLELSKRIPCL   95 (117)
Q Consensus        58 ~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~   95 (117)
                      ++.++.+++++||++||+||++.+++||++++++++++
T Consensus         2 ~~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~~   39 (40)
T 2koe_A            2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPSA   39 (40)
T ss_dssp             HHHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhhc
Confidence            35678899999999999999999999999999988654

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=98.76  E-value=5.9e-11  Score=54.93  Aligned_cols=28  Identities=29%  Similarity=0.441  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15241         19 VRIAKTAITLCALFVASWTPYAVVALTG   46 (117)
Q Consensus        19 ~k~~k~l~~iv~~f~icw~P~~~~~~~~   46 (117)
                      +|++|++.+++++|++||+||++..++.
T Consensus         2 ~k~~k~l~~vv~~F~icW~P~~i~~~~~   29 (33)
T 2ki9_A            2 VRLAKTLGLVLAVLLICWFPVLALMAHS   29 (33)
T ss_dssp             CSSSSHHHHHHHHHTTTSSHHHHHHTTT
T ss_pred             chhhhhHHHHHHHHHHHHhHHHHHHHHH
Confidence            5678899999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	117
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	1e-14

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 1e-14
 Identities = 25/100 (25%), Positives = 41/100 (41%)

Query: 16  SAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPY 75
            AE  + +  I +   F+  W PYA VA        S   P    IPA   K  A  +P 
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPV 304

Query: 76  VYAISHPRYRLELSKRIPCLGIKEKEPEKETASAQTEATT 115
           +Y + + ++R  +   + C      + E  T  ++TE + 
Sbjct: 305 IYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQ 344

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	117
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	85.12

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.4e-21  Score=131.90  Aligned_cols=104  Identities=24%  Similarity=0.350  Sum_probs=83.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHh
Q psy15241         11 KEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSK   90 (117)
Q Consensus        11 ~~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~   90 (117)
                      ...+.++++|++|++++++++|++||+|+.+..++..........+....++.+++++|+++||+||.+.+++||+++++
T Consensus       240 ~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~  319 (348)
T d1u19a_         240 SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT  319 (348)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHH
T ss_pred             hhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            34456778999999999999999999999999888877766656677778899999999999999999999999999999


Q ss_pred             hcccCcccCCCcccccccCCCCCC
Q psy15241         91 RIPCLGIKEKEPEKETASAQTEAT  114 (117)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~  114 (117)
                      +++|...+...++..+..+.++++
T Consensus       320 ~l~c~~~~~~~~~~~~~~s~t~~s  343 (348)
T d1u19a_         320 TLCCGKNPLGDDEASTTVSKTETS  343 (348)
T ss_dssp             HHTSSCCCTTTCCSSCCCCSSSSC
T ss_pred             HhCCCCCCCCCCCCCCccCCCCCC
Confidence            997665544444433333333333

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.12  E-value=2  Score=26.86  Aligned_cols=104  Identities=7%  Similarity=-0.070  Sum_probs=56.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcchhHhHHHHHHHhhhccccchhheecChHHHHHHHh
Q psy15241         11 KEGQSSAEVRIAKTAITLCALFVASWTPYAVVALTGAFGDQSLLTPGLTMIPACTCKAVACLDPYVYAISHPRYRLELSK   90 (117)
Q Consensus        11 ~~~~~~~~~k~~k~l~~iv~~f~icw~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~   90 (117)
                      ++...++.++-.|....++++.++..+-+.-..++....... ...........+...=..+|+.+--+.---+-+++|+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~-~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~  315 (348)
T d1u19a_         237 QQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTH-QGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRN  315 (348)
T ss_dssp             SCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHH
T ss_pred             cchhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeecc-CCccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            344445555666665555444454444444444444443333 2223344455555555667777766665666888998


Q ss_pred             hcccC-cccCCCcccccccCCCCCCC
Q psy15241         91 RIPCL-GIKEKEPEKETASAQTEATT  115 (117)
Q Consensus        91 ~~~~~-~~~~~~~~~~~~~~~~~~~~  115 (117)
                      .+... ++++.....+..+++.+.++
T Consensus       316 ~~~~~l~c~~~~~~~~~~~~~~s~t~  341 (348)
T d1u19a_         316 CMVTTLCCGKNPLGDDEASTTVSKTE  341 (348)
T ss_dssp             HHHHHHTSSCCCTTTCCSSCCCCSSS
T ss_pred             HHHHHhCCCCCCCCCCCCCCccCCCC
Confidence            88765 55555444444444444443