Psyllid ID: psy15301

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------
Protein Sequence
MEGAREPRIHGKHPGPVRHLLKILTLKRILTGVKTQPVCVADMKKKRVTPLEQLKNIGITGFFSLFSGDEKTLNMKRSYTLSINALPGFKLHSSTTIRFCICSIGTNLTNPLTTVLGAGSPNSTFSTYRESASGCLEASMIFPTRKSSRPISTGPSSLSLGFGAAAFAGFVLAGFSGLVLVSLSTGDLDCGVLDARWEGKCQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNPLNNFSENLECGRDKSQVSQKIDIVADKSNVSDTTNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDKSQISQKIDIVADKSNVSDTTNITDNTSHRPVTTNKTDLSQDKTESSVNKLNVRMEPAELLQKLQENVEKWYLKHWESVILYKRPGEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVISLSETPKKVNLDKVTNSTHSKENGRVNNFREESDRVNTAREQCSEEGKERKTNSTSSFEVTPSKTGGESTSNYQVKQTSNDEKYYEKKRVSTSKDEVNENGRKKRRISTSNEITNNKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSNDEPTRTEKDNKRKRILEDIEDRIEEVVLGLDDADESGNELNEDQTSEAMDLKEVAEHQTESENREIVDKCTNVLDRVDKSTNILDNKGSSNKSSEAKRPNSSSKPNSSKYNEESNESSSLVKSNKDSPTETSITSESDKESQDEGNPIVHKPEETKDKNVRKSSDIEGTGQKSSDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQKSSDLDGTARKSSDLDRYNIGIEDFLFGSMSEEQTRMLKVYSKVLTLADLVRVLQVPINPFNQQKVSFLSLVALIRMKNT
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHHccccccEEEEcccccccccccccEEEEEEccccccccccccEEEEEEEEcccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccEEEEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccHHHHHHHHHHccccHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHEEEEEEEEEEHHHHHHHHcccccccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEccccccccHHHHHHHccccccEEccccccccccccccEEEEEEcccccEEccccEEEEEEEEccccccccccEEcccccccccccccccccccHHHHHEEccccccccccccccccccHHHHHHHHHHHHHHccccEEEEEEccccccccccEcccccccccEEEEcccccccccccccccccHHHHHHHEEEccccEEEEccEEcEEcccccEEcccccccccccccHHHHccccccccccHHHHcccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHccccccHHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccHcccccHHHcccHHccccccccccccccccccccccccccccccccccccccccHccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccHHHHHHcHHHHHccccccHcccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHEcccccHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
megareprihgkhpgpvrHLLKILTLKRIltgvktqpvcvadmkkkrvtpleqlknigitgffslfsgdektlNMKRSYTLSInalpgfklhssttIRFCICSigtnltnplttvlgagspnstfstyresasgcleasmifptrkssrpistgpsslslgfgAAAFAGFVLAGFSGLVLVSLStgdldcgvldarwegkcqrrwklhgytrnpdpvlnpkkkifetvapdlktndsnqatykgkvWTVENVEGfvtsqrvnplnnfsenlecgrdksqvsqkidivadksnvsdttnitdntshrpvteketLHVRRKNINIEYIMDNFsenlecgrdksqisqkidivadksnvsdttnitdntshrpvttnktdlsqdktesSVNKLNVRMEPAELLQKLQENVEKWYLKHWESVILykrpgedflvqpavislsetpkksvilykcpgedflvqpavislsetpkkvnldkvtnsthskengrvnnfreesDRVNTAREQCseegkerktnstssfevtpsktggestsnyqvkqtsndekyyEKKRVSTskdevnengrkkrristsneitnnkecserlptsnlevsqsnkdgdsetkrvpsneilneenskkrrlstsndeptrtekdnKRKRILEDIEDRIEEVVLGlddadesgnelnedqtseAMDLKEVAEHQTESENREIVDKCTNVLDRVdkstnildnkgssnksseakrpnssskpnsskyneesnessslvksnkdsptetsitsesdkesqdegnpivhkpeetkdknvrkssdiegtgqkssdlqdtaqkssdlegtarkssdlegtarkssdlegtarksndleqsaqkssdlegtaqkssdlqgtaqkssdldgtarkssdldrynigiedflfgsmsEEQTRMLKVYSKVLTLADLVRVLqvpinpfnqqkVSFLSLVALIRMKNT
Flexible Loop (DISEMBL)
megareprihgkhpgpvrHLLKILTLkriltgvktqpvcvadmkkkrvtpleqlknigitgffslFSGDEKTLNMKRSYTLSINALPGFKLHSSTTIRFCICSIGTNLTNPLTTVLGAGSPNSTFSTYRESASGCLEASMIFPTRKSSRPISTGPSSLSLGFGAAAFAGFVLAGFSGLVLVSLSTGDLDCGVLDARWEgkcqrrwklhgytrnpdpvlnpKKKIFEtvapdlktndsnqatykgKVWTVENVEGfvtsqrvnplnnFSENLECGRDKSQVSQKIDivadksnvsdttnitdntshrpvteketlhvrrkniNIEYIMDNFSENLECGRDKSQISQKidivadksnvsdttnitdntshrpvttnktdlsqdktessvnklnvrMEPAELLQKLQENVEKWYLKHWESVILYKRPGEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVislsetpkkvnldkvtnsthskengrvnnfreesdrvntareqcseegkerktnstssfevtpsktggestsnyqvkqtsndekyyekkrvstskdevnengrkkrristsneitnnkecserlptsnlevsqsnkdgdsetkrvpsneilneenskkrrlstsndeptrtekdnkrkrilediedRIEEVvlglddadesgnELNEDQTSEAMDLKEVAehqtesenreivdkctnvldrvdkstnildnkgssnksseakrpnssskpnsskyneesnessslvksnkdsptetsitsesdkesqdegnpivhkpeetkdknvrkssdiegtgqkssdlqdtaqkssdlegtarkssdlegtarkssdlegtarksndleqsaqkssdlegtaqkssdlqgtaqkssdldgtarkssdldrynIGIEDFLFGSMSEEQTRMLKVYSKVLTLADLVRVLQVpinpfnqqkvsflSLVALIRMKNT
Low Complexity Region (SEG)
MEGAREPRIHGKHPGPVrhllkiltlkriltGVKTQPVCVADMKKKRVTPLEQLKNIGITGFFSLFSGDEKTLNMKRSYTLSINALPGFKLHSSTTIRFCICSIGTNLTNPLTTVLGAGSPNSTFSTYRESASGCLEASMIFPTRKSSRPISTGPsslslgfgaaafagfvlagfsglVLVSLSTGDLDCGVLDARWEGKCQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNPLNNFSENLECGRDKSQVSQKIDIVADKSNVSDTTNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDKSQISQKIDIVADKSNVSDTTNITDNTSHRPVTTNKTDLSQDKTESSVNKLNVRMEPAELLQKLQENVEKWYLKHWESVILYKRPGEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVISLSETPKKVNLDKVTNSTHSKENGRVNNFREESDRVNTAREQCSEEGKERKTNSTSSFEVTPSKTGGESTSNYQVKQTSNDEKYYEKKRVSTSKDEVNENGRKKRRISTSNEITNNKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSNDEPTRTEKDNKRKrilediedrieevvlGLDDADESGNELNEDQTSEAMDLKEVAEHQTESENREIVDKCTNVLDRVDKSTNILDNKGSSNKSSEAKRPnssskpnsskyneesnessslvksnkDSPTETSITSESDKESQDEGNPIVHKPEETKDKNVRKSSDIEGTGQKSSDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQKSSDLDGTARKSSDLDRYNIGIEDFLFGSMSEEQTRMLKVYSKVLTLADLVRVLQVPINPFNQQKVSFLSLVALIRMKNT
Disordered region (IsUnstruct)
****************VRHLLKILTLKRILTGVKTQPVCVADMKKKRVTPLEQLKNIGITGFFSLFSGDEKTLNMKRSYTLSINALPGFKLHSSTTIRFCICSIGTNLTNPLTTVLGAG**************************************LSLGFGAAAFAGFVLAGFSGLVLVSLSTGDLDCGVLDARWEGKCQRRWKLHGYTRNPDPVLNPKKKIFETVAPDL******QATYKGKVWTVENVEGFVTSQRVNPLNNF**********************************************LHVRRKNINIEYIMDNFSENLEC**************************************************************LLQKLQENVEKWYLKHWESVILYKRPGEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVISL***************************************************************************************************************************************************************************************************************************************CT*V****************************************************************************************************************************************************************************************RYNIGIEDFLFGSMSEEQTRMLKVYSKVLTLADLVRVLQVPINPFNQQKVSFLSLVALIR****
Disordered Region (DISOPRED)
***********KHPGPVRHLLKILTLKRILTGVKTQPVCVADMKKKRVTPLEQLKNIGITGFFSLFSGDEKTLNMKRSYTLSINALPGFKLHSSTTIRFCICSIGTNLTNPLTTVLGAGSPNSTFSTYRESASGCLEASMIFP**************LSLGFGAAAFAGFVLAGFSGLVLVSLSTGDLDCGVLDARWEGKCQRRWKLHGYTR*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KVLTLADLVRVLQVPINPFNQQKVSFLSLVALIRMK**
Disordered Region (DISEMBL)
MEGAREPRIHGKHPGPVRHLLKILTLKRILTGVKTQPVCVADMKKKRVTPLEQLKNIGITGFFSLFSGDEKTLNMKRSYTLSINALPGFKLHSSTTIRFCICSIGTNLTNPLTTVLGAGSPNSTFSTYRESASGCLEASMIFPTR***********SLSLGFGAAAFAGFVLAGFSGLVLVSLSTGDLDCGVLDARWEGKCQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNPLNNFSENLECGRDKSQVSQKIDIVADKSNVSDTTNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDKSQISQKIDIVADKSNVSDTTNITDNTSHRPVTTNKTDLSQDKTESSVNKLNVRMEPAELLQKLQENVEKWYLKHWESVILYKRPGEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVISLSETPKKVNLDKVTNSTHSKENGRVNNFR*************************************************************************KRRISTSNEITNNKECSERLPTSN*****************PSNEILNE**********************KRKRILEDIEDRIEEVVLGLDDADESGNELNEDQTSEAMDLK************EIVDKCTNVLDRVDKSTNILDNK***********************************************************PIVHKPEET*************************************************************************************************SSDLDRYNIGIEDFLFGSMSEEQTRMLKVYSKVLTLADLVRVLQVPINPFNQQKVSFLSLVALIRMKNT
Disordered Region (DISPRO)
************HPGPVRHLLKILTLKRILTGVKTQPVCVADMKKKRVTPLEQLKNIGITGFFSLFSGDEKTLNMKRSYTLSINALPGFKLHSSTTIRFCICSIGTNLTNPLTTVLGAG*************SGCLEAS*IFPTRKS********SSLSLGFGAAAFAGFVLAGFSGLVLVSLSTGDLDCGVLDARWEGKCQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNP*NN********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IGIEDFLFGSMSEEQTRMLKVYSKVLTLADLVRVLQVPINPFNQQKVSFLSLVALIRMKN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGAREPRIHGKHPGPVRHLLKILTLKRILTGVKTQPVCVADMKKKRVTPLEQLKNIGITGFFSLFSGDEKTLNMKRSYTLSINALPGFKLHSSTTIRFCICSIGTNLTNPLTTVLGAGSPNSTFSTYRESASGCLEASMIFPTRKSSRPISTGPSSLSLGFGAAAFAGFVLAGFSGLVLVSLSTGDLDCGVLDARWEGKCQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNPLNNFSENLECGRDKSQVSQKIDIVADKSNVSDTTNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDKSQISQKIDIVADKSNVSDTTNITDNTSHRPVTTNKTDLSQDKTESSVNKLNVRMEPAELLQKLQENVEKWYLKHWESVILYKRPGEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVISLSETPKKVNLDKVTNSTHSKENGRVNNFREESDRVNTAREQCSEEGKERKTNSTSSFEVTPSKTGGESTSNYQVKQTSNDEKYYEKKRVSTSKDEVNENGRKKRRISTSNEITNNKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSNDEPTRTEKDNKRKRILEDIEDRIEEVVLGLDDADESGNELNEDQTSEAMDLKEVAEHQTESENREIVDKCTNVLDRVDKSTNILDNKGSSNKSSEAKRPNSSSKPNSSKYNEESNESSSLVKSNKDSPTETSITSESDKESQDEGNPIVHKPEETKDKNVRKSSDIEGTGQKSSDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQKSSDLDGTARKSSDLDRYNIGIEDFLFGSMSEEQTRMLKVYSKVLTLADLVRVLQVPINPFNQQKVSFLSLVALIRMKNT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	947
242009689	330	methionyl-tRNA synthetase, putative [Ped	0.063	0.181	0.580	9e-09
156389042	163	predicted protein [Nematostella vectensi	0.114	0.662	0.431	8e-08
346473491	311	hypothetical protein [Amblyomma maculatu	0.053	0.163	0.588	1e-06
294505776	347	hypothetical protein BMQ_pBM60073 [Bacil	0.101	0.276	0.260	2e-05
156036164	830	hypothetical protein SS1G_12768 [Sclerot	0.107	0.122	0.254	0.0001

>gi|242009689|ref|XP_002425615.1| methionyl-tRNA synthetase, putative [Pediculus humanus corporis] gi|212509508|gb|EEB12877.1| methionyl-tRNA synthetase, putative [Pediculus humanus corporis]

 Score = 69.3 bits (168), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 2/62 (3%)

Query: 199 GKCQR-RWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVT 257
           G C   R  + GY  +PDPVLNPKKKIFETVAPDLKT+    ATYKG  ++V   +G VT
Sbjct: 262 GSCPGDRITVEGYPGDPDPVLNPKKKIFETVAPDLKTDGKKIATYKGVPFSVTG-KGVVT 320

Query: 258 SQ 259
           +Q
Sbjct: 321 TQ 322

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156389042|ref|XP_001634801.1| predicted protein [Nematostella vectensis] gi|156221888|gb|EDO42738.1| predicted protein [Nematostella vectensis]

 Score = 66.2 bits (160), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/109 (43%), Positives = 54/109 (49%), Gaps = 1/109 (0%)

Query: 771 GNPIVHKPEETKDKNVRKSSDIEGTGQKSSDLQDTAQKSSDLEGTARKSSDLEGTARKSS 830
           G   VHK + + +  V KS   EGT  KS   + T  KS   EGT  KS   EGT RKS 
Sbjct: 33  GEGTVHKSQ-SGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVRKSQ 91

Query: 831 DLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQKSSDLDGTARKS 879
             EGT  KS   E +  KS   EGT  KS   +GT  KS   +GT  KS
Sbjct: 92  SGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKSQSGEGTVHKS 140

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|346473491|gb|AEO36590.1| hypothetical protein [Amblyomma maculatum]

 Score = 62.4 bits (150), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query: 209 GYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQ 259
           GY   PD  LNPKKKIFE VAPDLKT+   +ATYKG  W V   +G+VT++
Sbjct: 253 GYPGQPDVQLNPKKKIFEQVAPDLKTDSEKRATYKGHPWLVAGRQGYVTAE 303

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|294505776|ref|YP_003569836.1| hypothetical protein BMQ_pBM60073 [Bacillus megaterium QM B1551] gi|294352182|gb|ADE72505.1| conserved hypothetical protein [Bacillus megaterium QM B1551]

 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 62/96 (64%)

Query: 788 KSSDIEGTGQKSSDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQ 847
           + +D+E +  + +DL+ ++ + +D E ++ + +DLE ++ + +DLE ++    DLE S+ 
Sbjct: 206 READLEASSYRETDLETSSYRETDFETSSYREADLETSSYRETDLETSSYHEADLETSSY 265

Query: 848 KSSDLEGTAQKSSDLQGTAQKSSDLDGTARKSSDLD 883
           + +DLE ++   +DL+ ++   +DL+ ++ + +DL+
Sbjct: 266 RETDLETSSYHEADLETSSYHEADLETSSYRETDLE 301

Source: Bacillus megaterium QM B1551

Species: Bacillus megaterium

Genus: Bacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|156036164|ref|XP_001586193.1| hypothetical protein SS1G_12768 [Sclerotinia sclerotiorum 1980] gi|154698176|gb|EDN97914.1| hypothetical protein SS1G_12768 [Sclerotinia sclerotiorum 1980 UF-70]

 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 61/102 (59%)

Query: 783 DKNVRKSSDIEGTGQKSSDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTARKSNDL 842
           +KN R+S DIE   ++  D++   ++S D+E   R+  D+E   R+S D+E + R+  ++
Sbjct: 669 EKNQRRSPDIEKNQRRVPDIEKNQRRSPDIEKNQRRVPDIEKNQRRSPDIEKSQRRVPEI 728

Query: 843 EQSAQKSSDLEGTAQKSSDLQGTAQKSSDLDGTARKSSDLDR 884
           E++ ++  ++E   ++S D++   ++  D++   R+  ++D+
Sbjct: 729 EKNQRRVPEIEINQRRSPDIEKNQRRGPDVEKNQRRGPEIDK 770

Source: Sclerotinia sclerotiorum 1980

Species: Sclerotinia sclerotiorum

Genus: Sclerotinia

Family: Sclerotiniaceae

Order: Helotiales

Class: Leotiomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	947
UNIPROTKB|Q9NZW4	1301	DSPP "Dentin sialophosphoprote	0.418	0.304	0.199	8e-16
DICTYBASE|DDB_G0293562	527	DDB_G0293562 [Dictyostelium di	0.439	0.789	0.212	1.1e-13
CGD|CAL0003874	1404	PGA55 [Candida albicans (taxid	0.664	0.448	0.186	1.4e-13
UNIPROTKB|Q59SG9	1404	PGA55 "Flocculin-like protein"	0.664	0.448	0.186	1.4e-13
TAIR|locus:504955937	734	AT2G22795 "AT2G22795" [Arabido	0.421	0.543	0.215	3.2e-13
UNIPROTKB|E9PTW3	952	Dspp "Dentin sialophosphoprote	0.423	0.421	0.192	1.8e-12
GENEDB_PFALCIPARUM|PF14_0758	1263	PF14_0758 "hypothetical protei	0.629	0.471	0.197	1.1e-11
UNIPROTKB|Q8IK49	1263	PF14_0758 "Putative uncharacte	0.629	0.471	0.197	1.1e-11
FB|FBgn0036203	1514	Muc68D "Mucin 68D" [Drosophila	0.418	0.261	0.210	5.9e-11
DICTYBASE|DDB_G0289719	1419	DDB_G0289719 "SFRS2-interactin	0.631	0.421	0.177	7e-11

UNIPROTKB|Q9NZW4 DSPP "Dentin sialophosphoprotein" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 8.0e-16, Sum P(2) = 8.0e-16
 Identities = 81/407 (19%), Positives = 157/407 (38%)

Query:   478 NSTHSKENGRVNNFREESDRVNTAREQCSEEGKERKTNSTSSFEVTPSKTGGESTSNYQV 537
             +S  S  +   +N   +SD  ++     S+      +NS+ S + + S    +S+ +   
Sbjct:   563 SSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDS 622

Query:   538 KQTSNDEKYYEKKRVSTSK-DEVNENGRKKRRISTSNEITNNKECSERLPTSNLEVSQSN 596
             K  S+  K       S SK D  + N       S S++ +N+   S+   +S+   S S+
Sbjct:   623 K--SDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSS 680

Query:   597 KDGDSETKRVPSNEILNEENSKKRRLSTSNDEPTRTEKDNKRKXXXXXXXXXXXXXXXGL 656
              D  + +    S++  N   S     S+ +D    ++  N                    
Sbjct:   681 SDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNS 740

Query:   657 DDADESGNELNEDQTSEAMDLKEVAEHQTESENREIVDKCTNVLDRVDKSTNILDNKGSS 716
              D+ +S +  N   +S++ D    ++    S++ +  D  +N  D  D S+N  D+  SS
Sbjct:   741 SDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDS-SNSSDSND-SSNSSDSSDSS 798

Query:   717 NKSSEAKRPXXXXXXXXXXXXXXXXXXXXXXXXXXDSPTETSITSESDKESQDEGNPIVH 776
             N S  +                             DS + +S +S+S   S    +   +
Sbjct:   799 NSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDS-SNSSDSSDSSDSSDGSDSDSSN 857

Query:   777 KPEETKDKNVRKSSDIEGTGQKSSDLQDTAQKSSDLEGT-ARKSSDLEGT-ARKSSDLEG 834
             + + +   +   SSD   +   SSD  D+ + S+  + + +  SSD + + +  SSD   
Sbjct:   858 RSDSSNSSDSSDSSDSSNSSD-SSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSD 916

Query:   835 TARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQKSSDLDGTARKSSD 881
             ++  S+  E S    +     +  SSD   ++  S+  D +   SSD
Sbjct:   917 SSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSS--NSSD 961

GO:0031214 "biomineral tissue development" evidence=IEA

GO:0071460 "cellular response to cell-matrix adhesion" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0001501 "skeletal system development" evidence=TAS

GO:0005201 "extracellular matrix structural constituent" evidence=TAS

GO:0005509 "calcium ion binding" evidence=TAS

GO:0005518 "collagen binding" evidence=TAS

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0001503 "ossification" evidence=TAS

DICTYBASE|DDB_G0293562 DDB_G0293562 [Dictyostelium discoideum (taxid:44689)]

 Score = 212 (79.7 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 95/448 (21%), Positives = 185/448 (41%)

Query:   472 NLDKVTNSTHSKENGRVNNFREESDRVNTAREQCSE---EGKERKTNSTSSFEVT-PSKT 527
             N +K     + KE  +     E SD  +++    S    E +++K       E   P K 
Sbjct:    90 NNNKRKLEENKKEEAKKKKKVESSDSSDSSSSDSSSSESEDEKKKKKEIKKVETKKPIKK 149

Query:   528 --GGESTSNYQVKQTSNDEKYY-EKKRVSTSKDEVNENGRKKRRISTSNEITNNKECSER 584
                 +S+ +     +S DEK   + K+V T K E  +   KK  + T  E +++ + S+ 
Sbjct:   150 VESSDSSDSDSSDSSSEDEKKKKDNKKVETKKVETKKVETKK--VETKKEESSDSDSSDS 207

Query:   585 LPTSNLEVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSNDEPTRTEKDNKR---KXX 641
               +S+   S+  K    +TK+V   EI  EE+  +   S S DE     KDNK+   K  
Sbjct:   208 DSSSSESESEDEKK-KKDTKKV---EIKKEESESESSESESEDE----NKDNKKVGTKKE 259

Query:   642 XXXXXXXXXXXXXGLDDADESGNELNEDQTSEAMDLKEVAEHQTESENREIVDKCTNVLD 701
                            D+  +  N+  E +  E+ D +  +E ++ S +     +  +  +
Sbjct:   260 ESSDSDSSSSESESEDEKKKKNNKKVEAKKEESSDSESESESESSSSSSSSSSESESEDE 319

Query:   702 RVDKSTNILDNK--GSSNK--SSEAKRPXXXXXXXXXXXXXXXXXXXXXXXXXXDSPTET 757
             +  K +  ++ K  GSS+   SSE+                             +S  E 
Sbjct:   320 KKKKDSKKVETKKEGSSDSESSSESVEDEKMDIEKVEIKKEESSDSESSSPASSESKEEE 379

Query:   758 SITSESDKESQDEGNPIVHKPEETKDKNVRKSSDIEGTGQKSSDLQDTAQKSSDLEGTAR 817
              +  E ++  ++E +    + EE + K+ ++ SD + + +     ++++  S   +   +
Sbjct:   380 KMDIEKEETKKEESSSSSSESEEEQKKSKKEDSDSDESSEDEKKKEESSSSSESEDEKKK 439

Query:   818 KSSDLEGTA--RKSSDLEGTAR-KSNDLEQSAQKSSDLEGTAQKSSDLQGTAQKSSDLDG 874
             + SD E +   +K  D + ++  +S D ++  + SS  E  ++K SD   ++  SS+ D 
Sbjct:   440 EDSDSESSEDEKKKEDSDSSSSSESEDEDKKKKDSSSSESESEKESD---SSSSSSESDS 496

Query:   875 TARKSSDLDRYNIGIEDFLFGSMSEEQT 902
             ++  SSD D  +         S SE ++
Sbjct:   497 SS--SSDSDSSSSSSSSSSSSSSSESES 522

GO:0044351 "macropinocytosis" evidence=RCA

CGD|CAL0003874 PGA55 [Candida albicans (taxid:5476)]

 Score = 217 (81.4 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 125/672 (18%), Positives = 277/672 (41%)

Query:   226 ETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNPLNNF-SENLECGRDKSQVSQKI 284
             E V+   K + S++AT         + E   +S +V   +   S + E     S+VS   
Sbjct:   154 EVVSSSSKVSSSSEATSSSSEIISSSSEVVSSSSQVTSSSEVVSSSSEVVSSSSEVSSSS 213

Query:   285 DIVADKSNVSDTTNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDKSQIS 344
             ++V+  S VS ++ ++ ++    V+      V   +  +    +  S + E     S++S
Sbjct:   214 EVVSSSSEVSSSSEVSSSSE---VSSSS--QVTSSSEIVSSSSEVSSSSSEVVSSSSEVS 268

Query:   345 QKIDIVADKSNVSDTTNITDNTSHRPVTTNKTDLSQDKTESS--VNKLNVRMEPAELLQK 402
                ++V+  S VS ++ ++  +S    ++++   S + + SS  ++   V    +E++  
Sbjct:   269 SSSEVVSSSSEVSSSSEVS--SSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSS 326

Query:   403 LQENVEKWYLKHWESVILYKRPGEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVI 462
               E      +     V+       +      V S SE    S +       + +   + +
Sbjct:   327 SSEVSSSSEVSSSSEVV---SSSSEVSSSSEVSSSSEVSSSSQVT---SSSEIVSSSSEV 380

Query:   463 SLSETPKKVNLDKVTNSTHS-KENGRVNNFRE--ESDRVNTAREQCSEEGKERKTNSTSS 519
             S S +    +  +V++S+     +  V++  E   S  V+++ E  S       +   SS
Sbjct:   381 SSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVSSSSQVISS 440

Query:   520 FEVTPSKTGGESTSNYQVKQTSNDEKYYEKKRVSTSKDEVNENGR---KKRRISTSNEIT 576
              EV  S +  E +S+ +V  +S++        VS+S  EV+ + +       +S+S+E++
Sbjct:   441 SEVVSSSS--EVSSSSEVVSSSSEVS--SSSEVSSSS-EVSSSSQVTSSSEIVSSSSEVS 495

Query:   577 NNKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNE-ENSKKRRLSTSNDEPTRTEKD 635
             ++   S  + +S+ EVS S++   S ++   S+E+ +  E S   ++ +S++  + + + 
Sbjct:   496 SS---SSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEIVSSSSEV 552

Query:   636 NKRKXXXXXXXXXXXXXXXGLDDADESGNELNEDQTSEAMDLKEV-AEHQTESENREIVD 694
             +                   +  + E  +      +SE     +V +  +  S + E+V 
Sbjct:   553 SSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVS 612

Query:   695 KCTNVLDRVDKSTNILDNKGSSNKSSEAKRPXXXXXXXXXXXXXXXXXXXXXXXXXXDSP 754
               + V    + S++  +   SS  SS ++                             S 
Sbjct:   613 SSSEVSSSSEVSSSS-EVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSS 671

Query:   755 TETSITSE--SDKESQDEGNPIVHKPEETKDKNVRKSSDIEGTGQK----SSDLQDTAQK 808
             +E S +SE  S        + +    E +    V  SS++  +  +    SS++  +++ 
Sbjct:   672 SEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEV 731

Query:   809 SSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQK 868
             SS  E ++  SS++  ++  SS  E T+  S  +  S+  SS++  +++ SS  Q T+  
Sbjct:   732 SSSSEVSS--SSEVSSSSEVSSSSEVTSSSSEIISSSS--SSEVTSSSEVSSSSQATSSS 787

Query:   869 SSDLDGTARKSS 880
             S  +  +++ SS
Sbjct:   788 SEIISSSSKVSS 799

GO:0009986 "cell surface" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q59SG9 PGA55 "Flocculin-like protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 217 (81.4 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 125/672 (18%), Positives = 277/672 (41%)

Query:   226 ETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNPLNNF-SENLECGRDKSQVSQKI 284
             E V+   K + S++AT         + E   +S +V   +   S + E     S+VS   
Sbjct:   154 EVVSSSSKVSSSSEATSSSSEIISSSSEVVSSSSQVTSSSEVVSSSSEVVSSSSEVSSSS 213

Query:   285 DIVADKSNVSDTTNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDKSQIS 344
             ++V+  S VS ++ ++ ++    V+      V   +  +    +  S + E     S++S
Sbjct:   214 EVVSSSSEVSSSSEVSSSSE---VSSSS--QVTSSSEIVSSSSEVSSSSSEVVSSSSEVS 268

Query:   345 QKIDIVADKSNVSDTTNITDNTSHRPVTTNKTDLSQDKTESS--VNKLNVRMEPAELLQK 402
                ++V+  S VS ++ ++  +S    ++++   S + + SS  ++   V    +E++  
Sbjct:   269 SSSEVVSSSSEVSSSSEVS--SSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSS 326

Query:   403 LQENVEKWYLKHWESVILYKRPGEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVI 462
               E      +     V+       +      V S SE    S +       + +   + +
Sbjct:   327 SSEVSSSSEVSSSSEVV---SSSSEVSSSSEVSSSSEVSSSSQVT---SSSEIVSSSSEV 380

Query:   463 SLSETPKKVNLDKVTNSTHS-KENGRVNNFRE--ESDRVNTAREQCSEEGKERKTNSTSS 519
             S S +    +  +V++S+     +  V++  E   S  V+++ E  S       +   SS
Sbjct:   381 SSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVSSSSQVISS 440

Query:   520 FEVTPSKTGGESTSNYQVKQTSNDEKYYEKKRVSTSKDEVNENGR---KKRRISTSNEIT 576
              EV  S +  E +S+ +V  +S++        VS+S  EV+ + +       +S+S+E++
Sbjct:   441 SEVVSSSS--EVSSSSEVVSSSSEVS--SSSEVSSSS-EVSSSSQVTSSSEIVSSSSEVS 495

Query:   577 NNKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNE-ENSKKRRLSTSNDEPTRTEKD 635
             ++   S  + +S+ EVS S++   S ++   S+E+ +  E S   ++ +S++  + + + 
Sbjct:   496 SS---SSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEIVSSSSEV 552

Query:   636 NKRKXXXXXXXXXXXXXXXGLDDADESGNELNEDQTSEAMDLKEV-AEHQTESENREIVD 694
             +                   +  + E  +      +SE     +V +  +  S + E+V 
Sbjct:   553 SSSSSEVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVS 612

Query:   695 KCTNVLDRVDKSTNILDNKGSSNKSSEAKRPXXXXXXXXXXXXXXXXXXXXXXXXXXDSP 754
               + V    + S++  +   SS  SS ++                             S 
Sbjct:   613 SSSEVSSSSEVSSSS-EVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSS 671

Query:   755 TETSITSE--SDKESQDEGNPIVHKPEETKDKNVRKSSDIEGTGQK----SSDLQDTAQK 808
             +E S +SE  S        + +    E +    V  SS++  +  +    SS++  +++ 
Sbjct:   672 SEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSSSSEV 731

Query:   809 SSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQK 868
             SS  E ++  SS++  ++  SS  E T+  S  +  S+  SS++  +++ SS  Q T+  
Sbjct:   732 SSSSEVSS--SSEVSSSSEVSSSSEVTSSSSEIISSSS--SSEVTSSSEVSSSSQATSSS 787

Query:   869 SSDLDGTARKSS 880
             S  +  +++ SS
Sbjct:   788 SEIISSSSKVSS 799

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009986 "cell surface" evidence=ISS

TAIR|locus:504955937 AT2G22795 "AT2G22795" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 92/426 (21%), Positives = 170/426 (39%)

Query:   462 ISLSETPKKVNLDKVTNSTHSKENGRVNNFREESDRVNTAREQCSEEGKERKTNSTSSFE 521
             I  SE  K+ ++D+  N   ++EN    +    S+ V+ + E+ SE     K    S  +
Sbjct:   277 IDESEESKEKDIDEKANIEEARENNYKGD-DASSEVVHESEEKTSESENSEKVEDKSGIK 335

Query:   522 VTPSKTGGESTSNYQVKQTSNDEKYYEKKRVSTSKDEVNENGRKKRRISTSNEITNNKEC 581
                 +       +     T N E   ++K  ST     +E+   +   S    +  N+  
Sbjct:   336 T--EEVEDSVIKSVLPNTTDNGESSSDEK--STGSSSGHESDSLEGIKSEGESMEKNELL 391

Query:   582 SERLPTSNLEVSQSNK-----DGDS-ETKRVPSNEILN--EENSKKRRLSTSNDEPTRTE 633
              +    SN E S + K     DG S ET  V S E     E  +K +  S+S +E    E
Sbjct:   392 EKEFNDSNGESSVTGKSTGSGDGGSQETSEVSSQEESKGKESETKDKEESSSQEESKDRE 451

Query:   634 KDNKRKXXXXXXXXXXXXXXXGLDDADESGNELNEDQTSEAMD---LKEVAEHQTESENR 690
              + K K                 +  + S  E NED+ +E ++   L+E  E + E++ +
Sbjct:   452 TETKEKEESSSQEETMDKETEAKEKVESSSQEKNEDKETEKIESSFLEETKEKEDETKEK 511

Query:   691 EIVDKCTNVLDRVDKSTNILDNK-GSSNKSSEAKRPXXXXXXXXXXXXXXXXXXXXXXXX 749
             E   + ++     +K T   DN+  SS + ++ K                          
Sbjct:   512 E---ESSSQEKTEEKETETKDNEESSSQEETKDKENEKIEKEEASSQEESKENETETKEK 568

Query:   750 XXDSPTETSITSESDKESQDEGNPIVHKPEETKDKNVRKSSDIEGTGQKSSDLQDTAQKS 809
                S  E +   E++K  ++E  P     EETK+K   K    E   Q+ +  ++T  K 
Sbjct:   569 EESSSQEETKEKENEKIEKEESAP----QEETKEKENEKIEKEESASQEETKEKETETKE 624

Query:   810 SDLEGTARKSSDLEGT-ARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQK 868
              + E ++ +S +   T + K   +E   +K+++    + K + +  T QK S+ + + ++
Sbjct:   625 KE-ESSSNESQENVNTESEKKEQVEENEKKTDEDTSESSKENSVSDTEQKQSE-ETSEKE 682

Query:   869 SSDLDG 874
              S+ +G
Sbjct:   683 ESNKNG 688

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|E9PTW3 Dspp "Dentin sialophosphoprotein" [Rattus norvegicus (taxid:10116)]

 Score = 201 (75.8 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 80/415 (19%), Positives = 160/415 (38%)

Query:   474 DKVTNSTHSKENG---RVNNFREESDRVNTAREQCSEEGKERKTNSTSSFEVTPSKTGGE 530
             D  +++  S  NG     +  ++ESD  N   +  SE   +   + + S + + S    +
Sbjct:   500 DDTSDTDDSDSNGDDDSESEDKDESDNSNHDNDSDSESKSDSSDSDSDSSDSSDSSDSSD 559

Query:   531 STSNYQVKQTSNDEKYYEKKRVSTSKDEVNENGRKKRRISTSNEITNNKECSERLPTSNL 590
             S+ +    ++S+     +    S S D  + +       S SN+ +++ + S+   +S+ 
Sbjct:   560 SSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSDSNDSSDSSDSSDSSDSSDS 619

Query:   591 EVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSNDEPTRTEK-DNKRKXXXXXXXXXX 649
               S  + D    +    S+E  + E+S     S S+D    +E  ++             
Sbjct:   620 SESSDSSDSSDSSDSSESSE--SSESSDSSDSSDSSDSSDSSESSESSDSSDSSDSSDSD 677

Query:   650 XXXXXGLDDADESGNELNEDQTSEAMDLKEVAEHQT-ESENREIVDKCTNVLDRVDKSTN 708
                     D+ +S +  +   +S++ D  + ++  + +S++ +  D  ++  D  D S +
Sbjct:   678 SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSDSSDSDSSDSSDS-SDSSDSSDSSDS 736

Query:   709 ILDNKGSSNKSSEAKRPXXXXXXXXXXXXXXXXXXXXXXXXXXDSPTETSITSESDKESQ 768
               D+  SSN  S                               DS   +  +  SD    
Sbjct:   737 S-DSSDSSNSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDS 795

Query:   769 DEGNPIVHKPEETKDKNVRKSSDI-EGTGQKSSDLQDTAQKSSDLEGTARKSSDLEGTAR 827
              + +      + +   +   SSD  + +   SSD  D++  SSD   ++  SSD   ++ 
Sbjct:   796 SDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNSSDSSDSSD-SSDSSDSS-DSSDSSDSS- 852

Query:   828 KSSDLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQKSSDL-DGTARKSSD 881
              SSD   ++  S+  + S   SSD + +   SSD   +    SD  D +   SSD
Sbjct:   853 DSSDSSDSSNSSDSSDSSDGDSSDGDSSDSDSSDSDSSNSSDSDSSDSSDSSSSD 907

GO:0071460 "cellular response to cell-matrix adhesion" evidence=IEA

GENEDB_PFALCIPARUM|PF14_0758 PF14_0758 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]

 Score = 199 (75.1 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 127/644 (19%), Positives = 252/644 (39%)

Query:   275 RDKSQVSQKIDIVADKSNVSDT-TNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSEN 333
             + K+  +Q+I + +  +N++   +N+T  TS     EK +  V  K     +I ++ S+ 
Sbjct:   343 KPKTDTTQQIRLNSKSNNMNGVKSNVT--TSKETPLEKPSNTVENKEGKNPFIDNDLSDK 400

Query:   334 LECGRDKSQISQKIDIVADKSNVSDTT-NITDNTSH--RPVTTNKTDLSQDKTESSVNKL 390
                 +D ++    + +  +K+N+ +   N T        P   N     +D  + S   L
Sbjct:   401 KSNMQDNNK---GLKVTTNKTNLKNKLGNNTKQIKQGANPFIENDVSDKKDNLQDSNKGL 457

Query:   391 NVRMEPAELLQKLQENVEKWYLKHWESVILYKRPGEDFLVQPAVISLSETPKKSVILYKC 450
             NV         KL++N ++  +K   +  +     ED L +   +   E  K      K 
Sbjct:   458 NVTTNKTNDKTKLEDNTKQ--IKKGTNPFM----DEDELEELLRLEREEKIKNE----KK 507

Query:   451 PGEDFLVQPAVISLSETPKKVNLDKVTNSTHSKENGRVNNFREESDRVNTAREQCSEEGK 510
               ED   Q    ++ +  K   L   TN T+ K N   NN ++     N   E    + K
Sbjct:   508 KNEDDN-QNKKSNMQDNNK--GLKVTTNKTNLK-NKLGNNTKQIKQGANPFIENDVSDKK 563

Query:   511 ERKTNSTSSFEVTPSKTGGEST---SNYQVKQTSN---DEKYYEKKRVSTSKDEVNENGR 564
             +   +S     VT +KT  ++    +  Q+K+ +N   DE   E+  +   ++E  +N +
Sbjct:   564 DNLQDSNKGLNVTTNKTNDKTKLEDNTKQIKKGTNPFMDEDELEEL-LRLEREEKIKNEK 622

Query:   565 KKRRISTSNEITNNKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNEENSKK--RRL 622
             KK      N+ +N    ++    +N +  Q+++D  ++  ++ +    NE+N K    +L
Sbjct:   623 KKNEDDNQNKKSNPSSQNK----TNSQNKQNSQDKTNKQSKLDTQNGKNEKNEKSIPNKL 678

Query:   623 STSNDEPTRTEKD--NKRKXXXXXXXXXXXXXXXGLDDADESGNELNEDQTSEAMDLKEV 680
              + N +  + EK   NK                  LD +    NE NE      +D +  
Sbjct:   679 DSQNGKNEKNEKSIPNKLDSQNGKNEKNEKSIPNKLD-SQNGKNEKNEKSIPNKLDSQN- 736

Query:   681 AEHQTESENREIVDKCTNVLDRVDKSTNILDNKGSSNKSSEAKRPXXXXXXXXXXXXXXX 740
                + E   + I +K  +   + +K+   + NK  S      K                 
Sbjct:   737 --GKNEKNEKSIPNKLDSQNGKNEKNEKSIPNKLDSQNGKNEKNIPNKLDSQNVPNKQNI 794

Query:   741 XXXXXXXXXXXDSPTETSITSESDKESQDEGNPIVHKPE-ETKDK-NVRKSSDIEGTGQK 798
                        +  T   + +E+ + +Q   N    K +  T  K N+  S D + T + 
Sbjct:   795 PNKLDSQNVKNEKDTPNKLDNENKENTQSNKNLNAKKSDIGTNGKSNIETSQDKQLTTKN 854

Query:   799 SSDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQK 858
             + + ++T + S   +     + D+E     SSD+    +K   L+  + K ++LE    K
Sbjct:   855 NDENKNTVKNSKFKDALLEVTKDIEHGI--SSDMLNKNQKGKQLKSESLKKNELENKNTK 912

Query:   859 SSD-LQGTAQKSSDLDGTARKSSDLDRYN-IGIEDFLFGSMSEE 900
             + D  +   +K  DL    ++  ++ + + +  +D   G  ++E
Sbjct:   913 NMDGNKNEFEKGYDLKTECKRDFNISQESGLDYKDEYDGEFNKE 956

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IK49 PF14_0758 "Putative uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 199 (75.1 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 127/644 (19%), Positives = 252/644 (39%)

Query:   275 RDKSQVSQKIDIVADKSNVSDT-TNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSEN 333
             + K+  +Q+I + +  +N++   +N+T  TS     EK +  V  K     +I ++ S+ 
Sbjct:   343 KPKTDTTQQIRLNSKSNNMNGVKSNVT--TSKETPLEKPSNTVENKEGKNPFIDNDLSDK 400

Query:   334 LECGRDKSQISQKIDIVADKSNVSDTT-NITDNTSH--RPVTTNKTDLSQDKTESSVNKL 390
                 +D ++    + +  +K+N+ +   N T        P   N     +D  + S   L
Sbjct:   401 KSNMQDNNK---GLKVTTNKTNLKNKLGNNTKQIKQGANPFIENDVSDKKDNLQDSNKGL 457

Query:   391 NVRMEPAELLQKLQENVEKWYLKHWESVILYKRPGEDFLVQPAVISLSETPKKSVILYKC 450
             NV         KL++N ++  +K   +  +     ED L +   +   E  K      K 
Sbjct:   458 NVTTNKTNDKTKLEDNTKQ--IKKGTNPFM----DEDELEELLRLEREEKIKNE----KK 507

Query:   451 PGEDFLVQPAVISLSETPKKVNLDKVTNSTHSKENGRVNNFREESDRVNTAREQCSEEGK 510
               ED   Q    ++ +  K   L   TN T+ K N   NN ++     N   E    + K
Sbjct:   508 KNEDDN-QNKKSNMQDNNK--GLKVTTNKTNLK-NKLGNNTKQIKQGANPFIENDVSDKK 563

Query:   511 ERKTNSTSSFEVTPSKTGGEST---SNYQVKQTSN---DEKYYEKKRVSTSKDEVNENGR 564
             +   +S     VT +KT  ++    +  Q+K+ +N   DE   E+  +   ++E  +N +
Sbjct:   564 DNLQDSNKGLNVTTNKTNDKTKLEDNTKQIKKGTNPFMDEDELEEL-LRLEREEKIKNEK 622

Query:   565 KKRRISTSNEITNNKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNEENSKK--RRL 622
             KK      N+ +N    ++    +N +  Q+++D  ++  ++ +    NE+N K    +L
Sbjct:   623 KKNEDDNQNKKSNPSSQNK----TNSQNKQNSQDKTNKQSKLDTQNGKNEKNEKSIPNKL 678

Query:   623 STSNDEPTRTEKD--NKRKXXXXXXXXXXXXXXXGLDDADESGNELNEDQTSEAMDLKEV 680
              + N +  + EK   NK                  LD +    NE NE      +D +  
Sbjct:   679 DSQNGKNEKNEKSIPNKLDSQNGKNEKNEKSIPNKLD-SQNGKNEKNEKSIPNKLDSQN- 736

Query:   681 AEHQTESENREIVDKCTNVLDRVDKSTNILDNKGSSNKSSEAKRPXXXXXXXXXXXXXXX 740
                + E   + I +K  +   + +K+   + NK  S      K                 
Sbjct:   737 --GKNEKNEKSIPNKLDSQNGKNEKNEKSIPNKLDSQNGKNEKNIPNKLDSQNVPNKQNI 794

Query:   741 XXXXXXXXXXXDSPTETSITSESDKESQDEGNPIVHKPE-ETKDK-NVRKSSDIEGTGQK 798
                        +  T   + +E+ + +Q   N    K +  T  K N+  S D + T + 
Sbjct:   795 PNKLDSQNVKNEKDTPNKLDNENKENTQSNKNLNAKKSDIGTNGKSNIETSQDKQLTTKN 854

Query:   799 SSDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQK 858
             + + ++T + S   +     + D+E     SSD+    +K   L+  + K ++LE    K
Sbjct:   855 NDENKNTVKNSKFKDALLEVTKDIEHGI--SSDMLNKNQKGKQLKSESLKKNELENKNTK 912

Query:   859 SSD-LQGTAQKSSDLDGTARKSSDLDRYN-IGIEDFLFGSMSEE 900
             + D  +   +K  DL    ++  ++ + + +  +D   G  ++E
Sbjct:   913 NMDGNKNEFEKGYDLKTECKRDFNISQESGLDYKDEYDGEFNKE 956

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)]

 Score = 193 (73.0 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 90/427 (21%), Positives = 166/427 (38%)

Query:   476 VTNSTHSKENGRVNNFREESDRVNTAREQCSEEGKERKTNSTSSFEVTPSKTGGESTSNY 535
             VT+ + S E+ + +  +E S   ++     S E     TN +SS E +   T  ES+S+ 
Sbjct:   390 VTDQSSSTESSQDSTTQESS---SSTEGPLSTESSTEATNESSSTESSQDSTTQESSSST 446

Query:   536 Q--VKQTSNDEKYYEKKRVSTSKDEVNENGRKKRR--IST--SNEITNNKECSERLPTSN 589
             +  +   S+ E   E     +S+D   +         +ST  S E TN    +E    S 
Sbjct:   447 EGPLSTESSTEATNESSSTESSQDSTTQESSSSTEGPLSTESSTEATNESSSTESSQDST 506

Query:   590 LEVSQSNKDG--DSETKRVPSNEILNEENSKK---RRLSTSNDEPTRTEKD---NKRKXX 641
              + S S+ +G   +E+    +NE  + E+S+    +  S+S + P  TE     N+    
Sbjct:   507 TQESSSSSEGPLSTESSTEATNESSSTESSQDSTTQESSSSTESPLSTEPSTEANESSST 566

Query:   642 XXXXXXXXXXXXXGLDD--ADESGNEL-NEDQTSEAMDLKEVAEHQTESENREIVDKCTN 698
                            +D  + ES  E  NE  ++E+       E  + +E     +  T 
Sbjct:   567 ESSQDSTTQESSSSTEDPLSTESSTEATNESSSTESSQDSTTQESSSSTEGPLSTESSTE 626

Query:   699 VLDRVDKSTNILDNKGSSNKSSEAKRPXXXXXXXXXXXXXXXXXXXXXXXXXXDSPTETS 758
               +    ST    +  +   SS  + P                           S TE  
Sbjct:   627 GSNE-SSSTESSQDSTTQKSSSSTESPLSTEPSTEANESSSTESSQDSTTQESSSSTEGP 685

Query:   759 ITSESDKESQDEGNPIVHKPEETKDKNVRKSSDIEGTGQKSSDLQDTAQKSSDLEGTARK 818
             +++E   E+ +  +      E ++D   ++SS     G  S++    A +SS  E +++ 
Sbjct:   686 LSTEPSTEANESSST-----ESSQDSTTQESSS-SSEGPLSTESSTEANESSSTE-SSQD 738

Query:   819 SSDLEGTARKSSDLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQG--TAQKSSDLDGTA 876
             S+  E ++   S L  T   +   E S+ +SS    T + SS  +G  + + S++ + ++
Sbjct:   739 STTQESSSSTESPLS-TEPSTEANESSSTESSQDSTTQESSSSTEGPLSTEPSTEANESS 797

Query:   877 RKSSDLD 883
                S  D
Sbjct:   798 STESSQD 804

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISM

GO:0005201 "extracellular matrix structural constituent" evidence=ISM

DICTYBASE|DDB_G0289719 DDB_G0289719 "SFRS2-interacting protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 192 (72.6 bits), Expect = 7.0e-11, P = 7.0e-11
 Identities = 114/644 (17%), Positives = 254/644 (39%)

Query:   257 TSQRVNPLN-NFSENLECGRDKSQVSQKIDIV-ADKSNVSDTTNITDNTSHRPVTEKETL 314
             T++ VN  + N ++N +   + +  + K +    + +N ++  N  +N ++         
Sbjct:    19 TNKNVNNNDDNVNKNSDNNNNNNNNNNKNNSKNKNNNNNNNNNNNNNNNNNNNNNNNNNN 78

Query:   315 HVRRKNINIEYIMDNFSENLECGRDKSQISQKIDIVADKSNVSDTTNITDNTSHRPVTTN 374
             +    N N     +N + N     + + +  +ID       + D     D   HR ++ +
Sbjct:    79 NNNNNNNNNNNNNNNNNNNYNSNNNINDVRVQIDPFESVELLKDVQR--DKKKHR-ISND 135

Query:   375 KTDLSQDKTESSVNKLNVRMEPAELLQKLQENVEKWYLKHWESV-----ILYKRPGEDFL 429
             K +L +DKT+++  K   + +  E +++  +   K   K  E +     +  K+  E+ +
Sbjct:   136 KEEL-KDKTKNNKEKEKEKDKEKEKVKEKDDTELKEETKENEKLNRKNNLKNKKEQEEIV 194

Query:   430 VQPAVISLSETPKKSVILYKCPGEDFLVQPAVISLSETPKKVNLDKVTNSTHSKENGRVN 489
              +   I   E  +K     K    D  V+    +     KK   D+        E   V 
Sbjct:   195 KENKEIDKKEKKRKRDEKEKDKSND-TVEKEKHNNKNILKKKKPDEEEEVEEEVEEEVV- 252

Query:   490 NFREESDRVNTAREQCSEEGKERKTNSTSSFEVTPSKTGGESTSNYQVKQTSNDEKYYEK 549
                 + D+V+   ++  E+ ++++T +T++     + T G+S      K   N+ +  E 
Sbjct:   253 ----KEDKVDKKSKKKKEKAEKKQTTTTTTTTTATTTTKGKSNVG---KNLINENRVNET 305

Query:   550 KRVSTSKDEVNENGRKK-RRISTSNEITNNKECSERLPTSNLEVSQSNKDGDSETKRVPS 608
                + + +  N N   + + I+   +  +N    ++  + + +  +  K+ +   K   S
Sbjct:   306 DDDNNNNNNHNNNANNEFKSITDKKQKLSNNIIKKKEESDDDDEKEKEKEKEKNKKLKNS 365

Query:   609 NEILNEENSKKRRLSTSNDEPTRTEKDNKRKXXXXXXXXXXXXXXXGLDDADESGNELNE 668
             N  +N+ NSK+ +  +    PT+++    +K                 +   E   E+++
Sbjct:   366 N--INKNNSKESQ--SIKKSPTKSQPKQSKKNASDKITKTIEESQS--ESESEEPIEISK 419

Query:   669 DQTSEAMDLKEV------AEHQTESENREIVDKC-TNVLDRVDKSTNI---LDNKGSSNK 718
               T + + LK+       +E ++E E ++IV+K  T  + +  K   +    + +     
Sbjct:   420 KSTDKPI-LKQSKKKPSESEEESEKEQKKIVNKSSTKPISKQSKKKAVESESEEESEPGS 478

Query:   719 SSEAKRPXXXXXXXXXXXXXXXXXXXXXXXXXXDSPTETSITSESDKESQDEG-NPIVHK 777
               E++                            +S +E+   SE ++ES++E  N +V K
Sbjct:   479 EEESEEESKKAVNKASAKPISKQSKKKAVESEPESESESDEESEEEEESEEEETNKVVTK 538

Query:   778 PEETKDKNVRKSSDIEGTGQKSSDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTAR 837
                +K     K  +IE   +  S+ ++  ++    E + +KSS       K S  + T  
Sbjct:   539 -STSKPLKQSKKKEIESESESKSEEEEEEEEEEKEEESKKKSSS------KQSKKKVTKS 591

Query:   838 KSNDLEQSAQKSSDLEGTAQKSSDLQGTAQKSSDLDGTARKSSD 881
             K     +S ++S D +   +KS+  Q   + + + D   +  SD
Sbjct:   592 KFESEHESEEESKDSKKNVKKSASKQSKKKVTQESDEELKSESD 635

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	947
PLN02610	801	PLN02610, PLN02610, probable methionyl-tRNA synthe	2e-06
PRK08581	619	PRK08581, PRK08581, N-acetylmuramoyl-L-alanine ami	1e-04
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	0.001

>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase

 Score = 51.3 bits (123), Expect = 2e-06
 Identities = 21/41 (51%), Positives = 25/41 (60%)

Query: 204 RWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKG 244
           R    G+   PD VLNPKKK++ET+ PDL TN    A YK 
Sbjct: 740 RVTFPGFEGEPDDVLNPKKKVWETLQPDLHTNSELVACYKD 780

Length = 801

>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated

 Score = 45.5 bits (108), Expect = 1e-04
 Identities = 25/171 (14%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 711 DNKGSSNKSSEAKRPNSSSKPNSSKYNEESNESSSLVKSNKDSPTETSITSESDKESQDE 770
               +++  S+    + +SK  SSK  ++++ +++  + N D    T     S  +S + 
Sbjct: 34  STAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKFST--IDSSTSDSNNI 91

Query: 771 GNPIVHKPEETKDKNVRKSSDIEGTGQKSSDLQDTAQKSSDLEGTARKSSDLEGTARKSS 830
            + I     +T    +   +  +     ++ +Q+    +SD+            + + ++
Sbjct: 92  IDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDY----EQPRNSEKSTN 147

Query: 831 DLEGTARKSNDLEQSAQKSSDLEGTAQKSSDLQGTAQKSSDLDGTARKSSD 881
           D    +  S   +   Q S   +   QK+     T   +S+    + K + 
Sbjct: 148 DSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQ 198

Length = 619

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 42.6 bits (100), Expect = 0.001
 Identities = 60/297 (20%), Positives = 101/297 (34%), Gaps = 30/297 (10%)

Query: 564 RKKRRISTSNEITNN-------KECSERLPTSNLEVSQSNKDGDSETKRVPSNEIL--NE 614
           RK+R +   NE           KE +  L  ++ E S+++  G + TK +   +    N 
Sbjct: 181 RKQREVQKENEFYMQLLQQALPKEENHTLSVTDKEKSEASSKGLTSTKELVPVQNSGGNH 240

Query: 615 ENSKKRRLSTSNDEPTRTEKDNKRKRILEDIEDRIEEVVL-----GLDDADESGNELNED 669
             SK     T   E +   KD+      +     I           L   +   N  N+ 
Sbjct: 241 SLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHHSKHADSKLQTIEVIENHSNKS 300

Query: 670 QTSEAMDLKEVAEHQTESENREIVDKCTNVLDRVDKSTNILDNKGSSNKSSEAKRPNSSS 729
           + S +            S          +       + N  ++   S+ S+    P+SS 
Sbjct: 301 RPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSPKSHSSANGSVPSSSV 360

Query: 730 KPNSSKYNEESNESSSLVKSNKDSPTETSITSESDKESQDEGNPIVHKPEETKDKNVRKS 789
             N SK    S  SS    S KD+   ++               + +   E K       
Sbjct: 361 SDNESKQKRASKSSSGARDSKKDASGMSA------------NGTVENCIPENKISTPSAI 408

Query: 790 SDIEGTGQK-SSDLQDTAQKSSDLEGTARKSSDLEGTARKSSDLEGTARKSNDLEQS 845
             +E   +K  ++LQ   Q  S+L       + LE + +  SDL G  +K ND+ Q+
Sbjct: 409 ERLEQDIKKLQAELQQARQNESELRNQISLLTSLERSLK--SDL-GQLKKENDMLQT 462

This entry is a highly conserved protein present in eukaryotes. Length = 680

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	947
KOG2241|consensus	255		99.97
PLN02610	801	probable methionyl-tRNA synthetase	99.85
cd02798	107	tRNA_bind_CsaA tRNA-binding-domain-containing CsaA	97.82
PRK10089	112	tRNA-binding protein; Provisional	97.75
TIGR02222	107	chap_CsaA export-related chaperone CsaA. This mode	97.7
TIGR00399	137	metG_C_term methionyl-tRNA synthetase C-terminal r	97.27
cd02800	105	tRNA_bind_EcMetRS_like tRNA-binding-domain-contain	97.27
cd02799	105	tRNA_bind_EMAP-II_like tRNA-binding-domain-contain	97.23
PF01588	95	tRNA_bind: Putative tRNA binding domain; InterPro:	96.23
cd02153	99	tRNA_bindingDomain The tRNA binding domain is also	95.93
PRK12267	648	methionyl-tRNA synthetase; Reviewed	95.01
COG0073	123	ARC1 EMAP domain [General function prediction only	93.11
PRK00133	673	metG methionyl-tRNA synthetase; Reviewed	93.02
cd02796	103	tRNA_bind_bactPheRS tRNA-binding-domain-containing	88.44

>KOG2241|consensus

Probab=99.97  E-value=5.3e-32  Score=271.30  Aligned_cols=128  Identities=27%  Similarity=0.347  Sum_probs=115.4

Q ss_pred             cccccccccCC----------ccc--cccCCCC-CcccccchhHHHhhhhhhcccc------------eEeEEecceeee
Q psy15301        135 CLEASMIFPTR----------KSS--RPISTGP-SSLSLGFGAAAFAGFVLAGFSG------------LVLVSLSTGDLD  189 (947)
Q Consensus       135 ClSa~~I~ptr----------ksi--~pis~g~-ss~sLg~g~aaF~~~V~a~~~G------------~lrGIKSqGMVL  189 (947)
                      =.+.+|||+|.          |+|  +-|++|+ -||-+++|...|.--  ++.|+            +.|||+|+||||
T Consensus        93 ~~~~LDiRvG~Ivka~kHpdADsLYve~IdvgE~~PRTVvSGLvk~vpl--eemq~R~VvvlcNLKPakmRgv~S~gMvl  170 (255)
T KOG2241|consen   93 DVSLLDIRVGKIVKAGKHPDADSLYVEEIDVGEAEPRTVVSGLVKHVPL--EEMQNRLVVVLCNLKPAKMRGVKSQGMVL  170 (255)
T ss_pred             CcceeeEEEeEEEEecccCCcceeEEEEeeecccccceeehhhHhhCCH--HHHhCCeEEEEeccccccccccccceeEE
Confidence            34568888777          787  8999999 899999999987543  55555            456799999999


Q ss_pred             eccCCCc--eeee-------ccceEEEcCCCCCCCCCCCcchhhHhhhcCCceecCCeeEEEcCeeeEEecCcceEEecc
Q psy15301        190 CGVLDAR--WEGK-------CQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQR  260 (947)
Q Consensus       190 CASNADh--VELL-------PGERVfFEGFEGEPDpVLNPKKKIWEKVQPDLKTNDDGVATYKGkPF~TSGKAGpCTApS  260 (947)
                      |||++||  ||+|       |||||+|+||+|+||++||||||+||++||||+|+++|+|+|||.+|+|+  .|.|+++|
T Consensus       171 caSs~d~~~VE~l~pP~gs~pGdRv~fegfegePd~~LnPKKKiwE~iqpdl~t~~~~va~yKg~~~~~~--~G~~~a~t  248 (255)
T KOG2241|consen  171 CASSPDKSVVEPLAPPAGSKPGDRVTFEGFEGEPDKELNPKKKIWEKIQPDLKTNEEGVATYKGAPFETK--KGVCTAQT  248 (255)
T ss_pred             ecCCcccceeeeccCCCCCCCCCeeeecCCCCCcchhcChhhhhHHHhCCCcccccceEEEecCCceecc--CceEEEee
Confidence            9999998  9999       99999999999999999999999999999999999999999999999998  49999999


Q ss_pred             cCCcee
Q psy15301        261 VNPLNN  266 (947)
Q Consensus       261 LKNA~I  266 (947)
                      |+|++|
T Consensus       249 i~n~~I  254 (255)
T KOG2241|consen  249 ISNGGI  254 (255)
T ss_pred             ccCCCC
Confidence            999987

>PLN02610 probable methionyl-tRNA synthetase

Probab=99.85  E-value=6.5e-22  Score=220.33  Aligned_cols=128  Identities=23%  Similarity=0.245  Sum_probs=110.4

Q ss_pred             cccccccccCC----------ccc--cccCCCC-CcccccchhHHHhhhhhhcccc------------eEeEEecceeee
Q psy15301        135 CLEASMIFPTR----------KSS--RPISTGP-SSLSLGFGAAAFAGFVLAGFSG------------LVLVSLSTGDLD  189 (947)
Q Consensus       135 ClSa~~I~ptr----------ksi--~pis~g~-ss~sLg~g~aaF~~~V~a~~~G------------~lrGIKSqGMVL  189 (947)
                      =|+.++|+++.          +++  ..|+.|. .++.+++|++.|...  ++..|            +++||.|+||||
T Consensus       639 ~~~~~dlrVg~I~~~~~hp~adkL~~~~Vd~G~~~~r~ivsG~~~~~~~--e~l~G~~Vvv~~nlkp~klrGv~S~GMll  716 (801)
T PLN02610        639 DVSRLDIRVGLIVKAEKHPDADSLYVEEIDVGEGAPRTVVSGLVKYIPL--EEMQNRKVCVLCNLKPAAMRGIKSQAMVL  716 (801)
T ss_pred             cceeeeeEEEEEEEEEeecCCCcceEEEEEeCCCceEEEEeCccccCCh--HHhCCCEEEEEEEecccccCCcccceeEE
Confidence            37778888877          455  5688896 689999999887522  33333            667899999999


Q ss_pred             eccCCCc--eeee-------ccceEEEcCCCCCCCCCCCcchhhHhhhcCCceecCCeeEEEcCeeeEEecCcceEEecc
Q psy15301        190 CGVLDAR--WEGK-------CQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQR  260 (947)
Q Consensus       190 CASNADh--VELL-------PGERVfFEGFEGEPDpVLNPKKKIWEKVQPDLKTNDDGVATYKGkPF~TSGKAGpCTApS  260 (947)
                      ||+++++  |+|+       ||+||+|+||+++|+++||||||+||+|||+|+||++|+|+|||.+|+|+  +|+|++++
T Consensus       717 ~a~~~~~~~~~ll~~~~~~~~G~~v~~~~~~~~p~~~~~~k~k~~~~~~~~l~~~~~~~~~~~~~~~~~~--~g~~~~~~  794 (801)
T PLN02610        717 AASNSDHTKVELVEPPESAAVGERVTFPGFEGEPDDVLNPKKKVWETLQPDLHTNSELVACYKDVPFTTS--AGVCKVAS  794 (801)
T ss_pred             ecccCCCCceEEEeCCCCCCCCCEEEeCCCCCCcccccCcccchHHHhCCCCEECCceEEEECCEEEEec--CCCeEccc
Confidence            9998764  8888       89999999999999999999999999999999999999999999999997  49999999


Q ss_pred             cCCcee
Q psy15301        261 VNPLNN  266 (947)
Q Consensus       261 LKNA~I  266 (947)
                      |+||.|
T Consensus       795 ~~~~~i  800 (801)
T PLN02610        795 IANGSI  800 (801)
T ss_pred             CCCCEe
Confidence            999987

>cd02798 tRNA_bind_CsaA tRNA-binding-domain-containing CsaA-like proteins

Probab=97.82  E-value=9.3e-06  Score=72.22  Aligned_cols=54  Identities=6%  Similarity=-0.221  Sum_probs=39.9

Q ss_pred             cccCCCC-CcccccchhHHHh-------------hhhhhcccceEeEEecceeeeeccCCC-ceeee-------ccceE
Q psy15301        149 RPISTGP-SSLSLGFGAAAFA-------------GFVLAGFSGLVLVSLSTGDLDCGVLDA-RWEGK-------CQRRW  205 (947)
Q Consensus       149 ~pis~g~-ss~sLg~g~aaF~-------------~~V~a~~~G~lrGIKSqGMVLCASNAD-hVELL-------PGERV  205 (947)
                      ..++.|. ..+.+.+|++.|.             +|++..   +++|+.|+||||||++++ .++|+       +|+||
T Consensus        32 ~~Vd~G~~~~r~ivsg~~~~~~~e~l~gk~v~~v~Nlkp~---k~~G~~S~gm~l~~~~~~~~~~~~~~~~~~~~G~~i  107 (107)
T cd02798          32 LKVDFGEIGVKQSSAQITKYYKPEELIGRQVVAVVNFPPK---QIAGVLSEVLVLGADDEGGEVVLLVPDREVPNGAKV  107 (107)
T ss_pred             EEEEecCccceehhhhhhhcCCHHHhcCCcEEEEeCCCCc---eecceeccEEEEEEEcCCCcEEEecCCCCCCCcCCC
Confidence            4456665 6778888888766             344433   888999999999999874 58877       67775

CsaA is a molecular chaperone with export related activities. CsaA has a putative tRNA binding activity. The functional unit of CsaA is a homodimer and this domain acts as a dimerization domain.

>PRK10089 tRNA-binding protein; Provisional

Probab=97.75  E-value=9.1e-06  Score=72.91  Aligned_cols=38  Identities=3%  Similarity=-0.427  Sum_probs=29.8

Q ss_pred             HHhhhhhhcccceEeEEecceeeeeccCCCc-eeee-------ccceEE
Q psy15301        166 AFAGFVLAGFSGLVLVSLSTGDLDCGVLDAR-WEGK-------CQRRWK  206 (947)
Q Consensus       166 aF~~~V~a~~~G~lrGIKSqGMVLCASNADh-VELL-------PGERVf  206 (947)
                      .|.+|++..   +++|+.|+||||||+++++ ++|+       +|+||+
T Consensus        67 ~~v~Nlkp~---~~~G~~S~gmil~~~~~~~~~~l~~p~~~~~~G~~i~  112 (112)
T PRK10089         67 VAVVNFPPK---QIAGFMSEVLVLGFEDEDGEVVLLTPDRPVPNGVKLV  112 (112)
T ss_pred             EEEECCCcc---eecCccccEEEEEEEcCCCeEEEecCCCCCCCcCCcC
Confidence            344565555   7889999999999998776 8888       788874

>TIGR02222 chap_CsaA export-related chaperone CsaA

Probab=97.70  E-value=2.3e-05  Score=70.18  Aligned_cols=56  Identities=7%  Similarity=-0.192  Sum_probs=42.6

Q ss_pred             cccCCCC--CcccccchhHHHhhhhhhcccc------------eEeEEecceeeeeccCCCc-eeee-------ccceEE
Q psy15301        149 RPISTGP--SSLSLGFGAAAFAGFVLAGFSG------------LVLVSLSTGDLDCGVLDAR-WEGK-------CQRRWK  206 (947)
Q Consensus       149 ~pis~g~--ss~sLg~g~aaF~~~V~a~~~G------------~lrGIKSqGMVLCASNADh-VELL-------PGERVf  206 (947)
                      ..++.|.  ..+.+.+|++.|...  ++..|            +++|+.|+||||||.+++. ++|+       +|+||+
T Consensus        30 l~vd~G~~~~~r~ivsgi~~~~~~--e~L~gk~v~~v~Nl~p~k~~G~~S~gMil~~~~~~~~~~l~~~~~~~~~G~~v~  107 (107)
T TIGR02222        30 LWVDFGTEIGVKQSSAQITKLYKP--EDLIGRLVVAVVNFPPKQIAGFLSEVLVLGVIDEQGRVVLLQPDRPVPNGTKIA  107 (107)
T ss_pred             EEEEecCcCCcceEehhhhhhCCH--HHhCCCeEEEEECCCCceeCCccccEEEEEEECCCCeEEEecCCCCCCCcCCcC
Confidence            4566674  358899999988764  44544            5678999999999998764 8887       788875

This model describes Bacillus subtilis CsaA, an export-related chaperone that interacts with the Sec system, and related proteins from a number of other bacteria and archaea. The crystal structure is known for the homodimer from Thermus thermophilus.

>TIGR00399 metG_C_term methionyl-tRNA synthetase C-terminal region/beta chain

Probab=97.27  E-value=9.8e-05  Score=68.84  Aligned_cols=62  Identities=11%  Similarity=-0.023  Sum_probs=41.7

Q ss_pred             ccCCccc--cccCCCCCcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCC-ceeee------
Q psy15301        142 FPTRKSS--RPISTGPSSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDA-RWEGK------  200 (947)
Q Consensus       142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNAD-hVELL------  200 (947)
                      +|..+++  -.++.|...+.+..|++.|..-  ....            .+++||.|+||||||.+++ .|+|+      
T Consensus        53 hp~adkL~v~~Vd~G~~~~qIvsg~~~~~~~--~~l~G~~v~~~~nlkp~k~~Gv~S~GMlls~~~~~~~~~l~~~~~~~  130 (137)
T TIGR00399        53 VEKSDKLLKLKLDLGDEKRQIVSGIAGYYTP--EELVGKKVIVVANLKPAKLFGVKSEGMILAAEDDGKVLFLLSPDQEA  130 (137)
T ss_pred             cCCCCcceEEEEEeCCceEEEEeCcccCcCH--hHcCCCEEEeeEEecCccCCCeEeccEEEEEecCCCeEEEecCCCCC
Confidence            4445555  4466666557777777555421  2222            2667899999999999988 48888      


Q ss_pred             -ccceE
Q psy15301        201 -CQRRW  205 (947)
Q Consensus       201 -PGERV  205 (947)
                       +|+||
T Consensus       131 ~~G~~i  136 (137)
T TIGR00399       131 IAGERI  136 (137)
T ss_pred             CCcCCc
Confidence             78887

The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model describes a region of the methionyl-tRNA synthetase that is present at the C-terminus of MetG in some species (E. coli, B. subtilis, Thermotoga maritima, Methanobacterium thermoautotrophicum), and as a separate beta chain in Aquifex aeolicus. It is absent in a number of other species (e.g. Mycoplasma genitalium, Mycobacterium tuberculosis), while Pyrococcus horikoshii has both a full length MetG and a second protein homologous to the beta chain only. Proteins hit by this model should called methionyl-tRNA synthetase beta chain if and only if the model metG hits a separate protein not also hit by this model.

>cd02800 tRNA_bind_EcMetRS_like tRNA-binding-domain-containing Escherichia coli methionyl-tRNA synthetase (EcMetRS)-like proteins

Probab=97.27  E-value=0.0001  Score=64.52  Aligned_cols=53  Identities=13%  Similarity=-0.011  Sum_probs=35.8

Q ss_pred             cCCCCCcccccchhHHHh-------------hhhhhcccceEeEEecceeeeeccCCCceeee-------ccceEE
Q psy15301        151 ISTGPSSLSLGFGAAAFA-------------GFVLAGFSGLVLVSLSTGDLDCGVLDARWEGK-------CQRRWK  206 (947)
Q Consensus       151 is~g~ss~sLg~g~aaF~-------------~~V~a~~~G~lrGIKSqGMVLCASNADhVELL-------PGERVf  206 (947)
                      ++.|...+.+..|+..+.             ++++.   ++++||.|+||+||+.++..++|+       +|+||+
T Consensus        33 vd~G~~~~~iv~g~~~~~~~~~l~g~~v~~~~nl~~---~~~~Gv~S~GMl~s~~~~~~~~l~~~~~~~~~G~~i~  105 (105)
T cd02800          33 VDLGEEERQIVSGIAKFYPPEELVGKKVVVVANLKP---RKLRGVESQGMILAAEDGGKLKLLTPDEEVEPGSRVS  105 (105)
T ss_pred             EEeCCeEEEEEeCcccccCHhHhccCceEeEeeECC---ccCCCeEeceEEEEecCCCeEEEEeCCCCCCCcCCcC
Confidence            455544555666655442             22233   367889999999999988668887       788873

This family includes EcMetRS and Aquifex aeolicus Trbp111 (AaTrbp111). This domain has general tRNA binding properties. MetRS aminoacylates methionine transfer RNAs (tRNAmet). AaTrbp111 is structure-specific molecular chaperone recognizing the L-shape of the tRNA fold. AaTrbp111 plays a role in nuclear trafficking of tRNAs. The functional unit of EcMetRs and AaTrbp111 is a homodimer, this domain acts as the dimerization domain.

>cd02799 tRNA_bind_EMAP-II_like tRNA-binding-domain-containing EMAP2-like proteins

Probab=97.23  E-value=0.00016  Score=63.38  Aligned_cols=29  Identities=17%  Similarity=-0.025  Sum_probs=24.1

Q ss_pred             eEeEEecceeeeeccCCC--ceeee-------ccceEE
Q psy15301        178 LVLVSLSTGDLDCGVLDA--RWEGK-------CQRRWK  206 (947)
Q Consensus       178 ~lrGIKSqGMVLCASNAD--hVELL-------PGERVf  206 (947)
                      +++|+.|+||+|||.+.+  ++.++       +|+||+
T Consensus        68 ~~~G~~S~GMll~~~~~~~~~~~~~~~~~~~~~G~~i~  105 (105)
T cd02799          68 KMRGVKSQGMVLCASNADHEKVELLEPPEGAKPGERVT  105 (105)
T ss_pred             eECCeeeceEEEEeccCCCCcEEEEECCCCCCCCCEeC
Confidence            788999999999999875  46666       788873

This family contains a diverse fraction of tRNA binding proteins, including Caenorhabditis elegans methionyl-tRNA synthetase (CeMetRS), human tyrosyl- tRNA synthetase (hTyrRS), Saccharomyces cerevisiae Arc1p, human p43 and EMAP2. CeMetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multiple activities during apoptosis, angiogenesis and inflammation and participates in malignant transformation. A EMAP-II-like cytokine also is released from hTyrRS upon cleavage. The active cytokine heptapeptide locates to this domain.

>PF01588 tRNA_bind: Putative tRNA binding domain; InterPro: IPR002547 This domain is found in prokaryotic methionyl-tRNA synthetases, prokaryotic phenylalanyl tRNA synthetases the yeast GU4 nucleic-binding protein (G4p1 or p42, ARC1) [], human tyrosyl-tRNA synthetase [], and endothelial-monocyte activating polypeptide II

Probab=96.23  E-value=0.002  Score=55.87  Aligned_cols=56  Identities=13%  Similarity=-0.018  Sum_probs=33.9

Q ss_pred             ccCCccc--cccCCCCCcccccchhHH-------------HhhhhhhcccceEeEEecceeeeeccC-CC-ceeee
Q psy15301        142 FPTRKSS--RPISTGPSSLSLGFGAAA-------------FAGFVLAGFSGLVLVSLSTGDLDCGVL-DA-RWEGK  200 (947)
Q Consensus       142 ~ptrksi--~pis~g~ss~sLg~g~aa-------------F~~~V~a~~~G~lrGIKSqGMVLCASN-AD-hVELL  200 (947)
                      ||..+++  -.++.|.-.+.+..|+.-             |++++...   +++|+.|+||+|||+. .+ +..++
T Consensus        12 hp~sdkL~~~~Vd~G~~~~~Ivsg~~n~~~~~~lv~~~~~~v~n~~~~---~i~Gv~SeGMlls~~e~~~~~~~ll   84 (95)
T PF01588_consen   12 HPNSDKLYVLKVDIGEEERQIVSGAKNVYEPEVLVGKKVVVVANLKPR---KIRGVESEGMLLSASELGDGSVGLL   84 (95)
T ss_dssp             ETTSSSEEEEEEESSSSEEEEEESCTTTSTHHHHTTTEEEEETTSCBE---EETTEEEESEE-EEECSTSSEEEEE
T ss_pred             CCCCCEEEEEEEEeCCceEEEEeccccccChhhhcceeEEEEEccCCc---EEEeccCCEEEEEeeccCCCCEEEE
Confidence            4555555  334444433555555544             44454444   8999999999999996 33 46665

G4p1 binds specifically to tRNA form a complex with methionyl-tRNA synthetases []. In human tyrosyl-tRNA synthetase this domain may direct tRNA to the active site of the enzyme []. This domain may perform a common function in tRNA aminoacylation [].; GO: 0000049 tRNA binding; PDB: 3BU2_C 1PYB_A 2Q2I_A 2Q2H_A 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 2CWP_A ....

>cd02153 tRNA_bindingDomain The tRNA binding domain is also known as the Myf domain in literature

Probab=95.93  E-value=0.003  Score=54.32  Aligned_cols=56  Identities=16%  Similarity=-0.046  Sum_probs=35.0

Q ss_pred             ccCCccc--cccCCCC-CcccccchhHHH-------------hhhhhhcccceEeEEecceeeeeccCC----Cceeee
Q psy15301        142 FPTRKSS--RPISTGP-SSLSLGFGAAAF-------------AGFVLAGFSGLVLVSLSTGDLDCGVLD----ARWEGK  200 (947)
Q Consensus       142 ~ptrksi--~pis~g~-ss~sLg~g~aaF-------------~~~V~a~~~G~lrGIKSqGMVLCASNA----DhVELL  200 (947)
                      +|..+++  -.++.|. ..+.+..|+.-+             +++++..   +++|+.|+||++|++..    +++.++
T Consensus        12 ~p~~~kL~~~~vd~G~~~~~~ivsg~~~~~~~~~~~g~~v~~~~~l~~~---~~~g~~S~GMl~s~~~~g~~~~~~~i~   87 (99)
T cd02153          12 HPNADKLYVLKVDIGEEKPRQIVSGAANVYPPEELVGKKVVVAVNLKPK---KLRGVESEGMLLSAEELGLEEGSVGIL   87 (99)
T ss_pred             CCCCCCCEEEEEEeCCCcEEEEEeCCcccCChHHhCCCEEEEEEecccc---cCCCeecccEEeeccccCCCCCceEEE
Confidence            4444444  3455554 455566665555             3444444   88999999999999985    245555

This domain is found in a diverse collection of tRNA binding proteins, including prokaryotic phenylalanyl tRNA synthetases (PheRS), methionyl-tRNA synthetases (MetRS), human tyrosyl-tRNA synthetase(hTyrRS), Saccharomyces cerevisiae Arc1p, Thermus thermophilus CsaA, Aquifex aeolicus Trbp111, human p43 and human EMAP-II. PheRS, MetRS and hTyrRS aminoacylate their cognate tRNAs. Arc1p is a transactivator of yeast methionyl-tRNA and glutamyl-tRNA synthetases. The molecular chaperones Trbp111 and CsaA also contain this domain. CsaA has export related activities; Trbp111 is structure-specific recognizing the L-shape of the tRNA fold. This domain has general tRNA binding properties. In a subset of this family this domain has the added capability of a cytokine. For example the p43 component of the Human aminoacyl-tRNA synthetase complex is cleaved to release EMAP-II cytokine. EMAP-II has multi

>PRK12267 methionyl-tRNA synthetase; Reviewed

Probab=95.01  E-value=0.013  Score=64.81  Aligned_cols=68  Identities=12%  Similarity=0.048  Sum_probs=45.2

Q ss_pred             ccccccccCC----------ccc--cccCCCC-CcccccchhHHHhhhhhhcccc------------eEeEEecceeeee
Q psy15301        136 LEASMIFPTR----------KSS--RPISTGP-SSLSLGFGAAAFAGFVLAGFSG------------LVLVSLSTGDLDC  190 (947)
Q Consensus       136 lSa~~I~ptr----------ksi--~pis~g~-ss~sLg~g~aaF~~~V~a~~~G------------~lrGIKSqGMVLC  190 (947)
                      |+.++|+++.          +++  -.++.|. .++.++.|++.+.  +.....|            +++||.|+|||||
T Consensus       548 f~~~d~~vg~i~~~~~~p~adkL~~~~vd~G~~~~~~iv~g~~~~~--~~~~l~g~~v~~~~nl~~~~~~Gv~S~gMl~s  625 (648)
T PRK12267        548 FDKVELRVAEVLEAEKVEKSDKLLKLQVDLGEEEPRQIVSGIAKFY--PPEELVGKKVVVVANLKPAKLMGEESQGMILA  625 (648)
T ss_pred             hhhhceeEEEEEeeccCCCCCccceEEEEeCCCceEEEEeCCcccC--CHhHhCCCeEEEEEeecccccCCcccceEEEE
Confidence            4556665554          555  4567774 5688888887654  2233333            5668999999999


Q ss_pred             ccCCCceeee-------ccceE
Q psy15301        191 GVLDARWEGK-------CQRRW  205 (947)
Q Consensus       191 ASNADhVELL-------PGERV  205 (947)
                      |..++++.++       +|+||
T Consensus       626 ~~~~~~~~l~~~~~~~~~G~~~  647 (648)
T PRK12267        626 AEDDGKLTLLTVDKEVPNGSKV  647 (648)
T ss_pred             eccCCeEEEEeCCCCCCCcCCC
Confidence            9885567666       56665

>COG0073 ARC1 EMAP domain [General function prediction only]

Probab=93.11  E-value=0.045  Score=50.15  Aligned_cols=54  Identities=19%  Similarity=0.043  Sum_probs=38.2

Q ss_pred             ccCCccc--cccCCCC--CcccccchhHHHhhh----------hhh---cccceEeEEecceeeeeccCCC
Q psy15301        142 FPTRKSS--RPISTGP--SSLSLGFGAAAFAGF----------VLA---GFSGLVLVSLSTGDLDCGVLDA  195 (947)
Q Consensus       142 ~ptrksi--~pis~g~--ss~sLg~g~aaF~~~----------V~a---~~~G~lrGIKSqGMVLCASNAD  195 (947)
                      ||..+++  -.++.|.  -++-+..|++-|.-.          |+-   =-..+++|++|+|||+||...+
T Consensus        32 ~p~adkL~~~~Vd~G~~~~~~qiv~G~~n~~~~~~vv~a~v~~v~~~~~ikp~klrG~~S~GMics~~e~~  102 (123)
T COG0073          32 HPNADKLLVLKVDLGDEKEPRQIVCGAPNFYAGEKLVGAKVGAVLNGGKLKPAKLRGVESEGMLLSAEELG  102 (123)
T ss_pred             CCCCCeeEEEEEEcCCCCcEEEEEcCCccccCCceeeeeeEEEEeCCCcccceeecCcccceEEEEcccCC
Confidence            4555656  5678885  478888888876542          222   2234899999999999999765

>PRK00133 metG methionyl-tRNA synthetase; Reviewed

Probab=93.02  E-value=0.044  Score=61.29  Aligned_cols=62  Identities=8%  Similarity=-0.075  Sum_probs=41.5

Q ss_pred             ccccccccCC----------ccc--cccCCCCCcccccchhHHHhhhhhhcccc------------eE-eEEecceeeee
Q psy15301        136 LEASMIFPTR----------KSS--RPISTGPSSLSLGFGAAAFAGFVLAGFSG------------LV-LVSLSTGDLDC  190 (947)
Q Consensus       136 lSa~~I~ptr----------ksi--~pis~g~ss~sLg~g~aaF~~~V~a~~~G------------~l-rGIKSqGMVLC  190 (947)
                      |..++|+++.          +++  -.++.|...+.++.|++.+.  +.....|            ++ +|| |+|||||
T Consensus       573 f~~~di~vg~I~~~~~~p~~~~l~~~~vd~G~~~~~iv~g~~~~~--~~~~l~G~~v~~~~nlkp~~~~~Gv-S~gMl~~  649 (673)
T PRK00133        573 FAKVDLRVAKIVEAEKVEGADKLLKLTLDLGEETRQVFSGIKSAY--DPEELVGKLVVMVANLAPRKMKFGV-SEGMVLA  649 (673)
T ss_pred             HhhhhcceeeeEeeecCCCCCccceeeEecCCceeEEEcCccccC--CHHHHhcCeeEEEEeeccccccCCc-cceeEEE
Confidence            4456766555          445  45677876788889887663  2122223            56 889 9999999


Q ss_pred             ccCCC-ceeee
Q psy15301        191 GVLDA-RWEGK  200 (947)
Q Consensus       191 ASNAD-hVELL  200 (947)
                      |.+++ .|.++
T Consensus       650 ~~~~~~~i~~l  660 (673)
T PRK00133        650 AGPGGGDLFLL  660 (673)
T ss_pred             eecCCCcEEEe
Confidence            98764 47666

>cd02796 tRNA_bind_bactPheRS tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain

Probab=88.44  E-value=0.17  Score=43.99  Aligned_cols=15  Identities=20%  Similarity=-0.090  Sum_probs=13.2

Q ss_pred             eEeEEecceeeeecc
Q psy15301        178 LVLVSLSTGDLDCGV  192 (947)
Q Consensus       178 ~lrGIKSqGMVLCAS  192 (947)
                      +++|+.|+||++++.
T Consensus        65 ~~~G~~S~GMl~s~~   79 (103)
T cd02796          65 KLRGVESEGMLCSAK   79 (103)
T ss_pred             eeCCcccchhCcchh
Confidence            789999999997765

PheRS aminoacylate phenylalanine transfer RNAs (tRNAphe). PheRSs belong structurally to class II aminoacyl tRNA synthetases (aaRSs) but, as they aminoacylate the 2'OH of the terminal ribose of tRNA they belong functionally to class 1 aaRSs. This domain has general tRNA binding properties and is believed to direct tRNAphe to the active site of the enzyme.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	947
1fl0_A	171	Crystal Structure Of The Emap2RNA-Binding Domain Of		4e-05
1e7z_A	174	Crystal Structure Of The Emap2RNA BINDING DOMAIN OF		4e-05
1euj_A	166	A Novel Anti-Tumor Cytokine Contains A Rna-Binding		4e-05

>pdb|1FL0|A Chain A, Crystal Structure Of The Emap2RNA-Binding Domain Of The P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 171

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 204 RWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVEN 251
           R     +   PD  LNPKKKI+E + PDL TND   ATYKG  + V+ 
Sbjct: 101 RITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKG 148

>pdb|1E7Z|A Chain A, Crystal Structure Of The Emap2RNA BINDING DOMAIN OF THE P43 Protein From Human Aminoacyl-Trna Synthetase Complex Length = 174

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 204 RWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVEN 251
           R     +   PD  LNPKKKI+E + PDL TND   ATYKG  + V+ 
Sbjct: 104 RITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKG 151

>pdb|1EUJ|A Chain A, A Novel Anti-Tumor Cytokine Contains A Rna-Binding Motif Present In Aminoacyl-Trna Synthetases Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 204 RWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVEN 251
           R     +   PD  LNPKKKI+E + PDL TND   ATYKG  + V+ 
Sbjct: 104 RITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKG 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	947
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1fl0_A	171	Endothelial-monocyte activating polypeptide II; RN	1e-13
1ntg_A	172	Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas	3e-11
4aco_A	956	Centromere DNA-binding protein complex CBF3 subun;	4e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 76.0 bits (186), Expect = 4e-14
 Identities = 81/488 (16%), Positives = 143/488 (29%), Gaps = 157/488 (32%)

Query: 40  VADMKKKRVTPLEQLKNIGITGFFSLFSGDEKTLNMKRSYTLSINALPGFKL----HSST 95
           V DM K  ++  E++ +I       + S D  +     +  L       F          
Sbjct: 38  VQDMPKSILSK-EEIDHI-------IMSKDAVS----GTLRL-------FWTLLSKQEEM 78

Query: 96  TIRFCICSIGTN---LTNPLTTVLGAGSPNST-FSTYRESASGCLEASMIFPTRKSSRP- 150
             +F    +  N   L +P+ T     S  +  +   R+        + +F     SR  
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN---DNQVFAKYNVSRLQ 135

Query: 151 ----ISTGPSSLSLGFGAAAFAGFVLAGFSG-----LVLVSLSTGDLDC----GVLDARW 197
               +      L            ++ G  G     + L    +  + C     +    W
Sbjct: 136 PYLKLRQALLELRPA------KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF---W 186

Query: 198 --EGKCQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGK---------- 245
                C            P+ VL   +K+   + P+  +   + +  K +          
Sbjct: 187 LNLKNCNS----------PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 246 ----------------VWTVENVEGFVTSQRVNPLNNFSENLEC-----GRDKSQVSQKI 284
                           V   +    F              NL C      R K       
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAF--------------NLSCKILLTTRFKQ------ 276

Query: 285 DIVADKSNVSDTTNITDNTSHRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDKSQIS 344
             V D  + + TT+I+ +     +T  E   +  K ++         ++L   R+    +
Sbjct: 277 --VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP------QDLP--REVLTTN 326

Query: 345 -QKIDIVADKSNVSDTTNITDNTSHRPVTTNKTDLSQDKTESSVNKLNVRMEPAELLQK- 402
            +++ I+A+   + D     DN  H  V  +K        ESS+N L    EPAE  +  
Sbjct: 327 PRRLSIIAES--IRDGLATWDNWKH--VNCDKLT---TIIESSLNVL----EPAEYRKMF 375

Query: 403 -----LQENV---EKWYLKHWESVILYKRPGEDFLVQPAVISLSET-PKKSVI----LY- 448
                   +           W  VI  K      + +    SL E  PK+S I    +Y 
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVI--KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

Query: 449 --KCPGED 454
             K   E+
Sbjct: 434 ELKVKLEN 441

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.7 bits (154), Expect = 2e-10
 Identities = 81/706 (11%), Positives = 189/706 (26%), Gaps = 219/706 (31%)

Query: 305 HRPVTEKETLHVRRKNINIEYIMDNFSENLECGRDKSQISQKIDIVADKSNVSDTTNITD 364
           H    E      + K+I +    D F +N +C +D                V D      
Sbjct: 5   HHMDFETGEHQYQYKDI-LSVFEDAFVDNFDC-KD----------------VQDMP---- 42

Query: 365 NTSHRPVTTNKTDLSQDKTESSVNKLNVRMEPAELLQKLQENVEKWYLKHWESVILYKRP 424
               + + + +                   E   ++   ++ V       W    L  + 
Sbjct: 43  ----KSILSKE-------------------EIDHII-MSKDAVSGTLRLFW---TLLSKQ 75

Query: 425 GEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVISLSETPKKVNLDKVT-NSTHSK 483
            E  +VQ  V  +          Y      FL+ P    +    ++ ++          +
Sbjct: 76  EE--MVQKFVEEVLRIN------Y-----KFLMSP----IKTEQRQPSMMTRMYIEQRDR 118

Query: 484 ENGRVNNFREESDRVNTAREQCSEEGKERKTNSTSSFEVTPSK-------TG-GEST--- 532
                  F     + N +R Q   + ++      +  E+ P+K        G G++    
Sbjct: 119 LYNDNQVFA----KYNVSRLQPYLKLRQ------ALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 533 ---SNYQVKQTSNDEKYYEKKRVSTSKDEVNENGRKKRRISTSNEITNNKECSERLPTSN 589
               +Y+V+   + + ++                     ++  N  +      E L    
Sbjct: 169 DVCLSYKVQCKMDFKIFW---------------------LNLKNCNSPE-TVLEMLQKLL 206

Query: 590 LEVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSNDEPTRTEKDNKRKR---ILEDIE 646
            ++  +       +  +     ++   ++ RRL           K    +    +L +++
Sbjct: 207 YQIDPNWTSRSDHSSNIKLR--IHSIQAELRRLL----------KSKPYENCLLVLLNVQ 254

Query: 647 DRIEEVVLGLD----------DADESGNELNEDQTSEAMDLKEVAEHQTESENREIVDKC 696
           +   +     +              + + L+   T+  + L   +   T  E + ++ K 
Sbjct: 255 NA--KAWNAFNLSCKILLTTRFKQVT-DFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKY 310

Query: 697 TNV----LDRVDKSTNILDNKG-SSNKSSEAKRPNSSSKPNSSKYNE---------ESNE 742
            +     L R   +TN       + +        ++    N  K            E  E
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 743 SSSLVKS----NKDSPTETSITSE------SDKESQDEGNPIVHKPEETKDKNVRKSSDI 792
              +          +     I +        D    D             +K  + S  +
Sbjct: 371 YRKMFDRLSVFPPSAH----IPTILLSLIWFDVIKSD--------VMVVVNKLHKYSL-V 417

Query: 793 EGTGQKSS----DLQDTAQKSSDLEGTARKSSDLEG-TARKSSDLEGTARKSND------ 841
           E   ++S+     +    +   + E    +S  ++     K+ D +       D      
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 842 -------LEQSAQKSS-------DLEGTAQK----SSDLQGTAQKSSDLDGTARKSSDLD 883
                  +E   ++ +       D     QK    S+    +    + L         L 
Sbjct: 477 IGHHLKNIEH-PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-------QQLK 528

Query: 884 RYN--IGIEDFLFGSMSEEQTRMLKVYSKVLTLADLVRVLQVPINP 927
            Y   I   D  +  +       L    + L  +    +L++ +  
Sbjct: 529 FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-05
 Identities = 50/376 (13%), Positives = 100/376 (26%), Gaps = 106/376 (28%)

Query: 633 EKDNKRKRILEDIEDRIEEVVLGLDDADESGNELNEDQTSEAMDLKEVAEHQTESENREI 692
           E   + K IL   ED        +D+                 D K+V +      ++E 
Sbjct: 13  EHQYQYKDILSVFEDAF------VDN----------------FDCKDVQDMPKSILSKEE 50

Query: 693 VDKCTNVLDRVDKSTNILDNKGSSNKSSEAKRPNSSSKPN----SSKYNEESNESSSLVK 748
           +D      D V  +  +     S  +    K      + N     S    E  +      
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP----- 105

Query: 749 SNKDSPTETSITSESDKESQDEGNPI-----VHKPEETKD-----KNVRKSSDI-----E 793
               S        + D+   D  N +     V + +           +R + ++      
Sbjct: 106 ----SMMTRMYIEQRDRLYND--NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 794 GTGQKSSDLQDTAQKSSDLEG---------TARKSSDLEGTARKSSDLEGTARKS--NDL 842
           G+G K+  +      S  ++            +  +  E        L      +  +  
Sbjct: 160 GSG-KTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 843 EQSAQKSSDLEGTAQKSSDLQGTAQ-KSS--DLDG------------------TARKSSD 881
           + S+     +     +   L  +   ++    L                    T R    
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277

Query: 882 LD------RYNIGIEDFLFGSMSEEQTRMLKVYSKVLTL--ADLVRVLQVPINPFNQQKV 933
            D        +I ++      ++ ++     +  K L     DL R + +  NP      
Sbjct: 278 TDFLSAATTTHISLDHHSMT-LTPDEV--KSLLLKYLDCRPQDLPREV-LTTNPR----- 328

Query: 934 SFLSLV-ALIR-MKNT 947
             LS++   IR    T
Sbjct: 329 -RLSIIAESIRDGLAT 343

>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A Length = 171

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 207 LHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQ 259
              +   PD  LNPKKKI+E + PDL TND   ATYKG  + V+  +G   +Q
Sbjct: 104 FDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKG-KGVCRAQ 155

>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4 Length = 172

 Score = 62.1 bits (151), Expect = 3e-11
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 207 LHGYTR-NPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQ 259
           + GY +  PD  L PKKK+FE +  D K ++   A +K   +  +   G ++ +
Sbjct: 111 VKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTK--LGSISCK 162

>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae} Length = 956

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 45/404 (11%), Positives = 117/404 (28%), Gaps = 30/404 (7%)

Query: 415 WESVILYKRPGEDFLVQPAVISLSETPKKSVILYKCPGEDFLVQPAVISLSETPKKVNLD 474
           ++  I      + +     + S         IL                L E P ++   
Sbjct: 485 FQDPIFGNSDFQSYFNDKTIHSKGSPILSFDILPGFNKIYKNKTNFYSLLIERPSQLTFA 544

Query: 475 KVTNSTHSKENGRVNNFREESDRVNTAREQ---CSEEGKERKTNSTSSF--------EVT 523
              N        + +    +  +++T +       +  +  +  + S+F        ++ 
Sbjct: 545 SSHNPDTHPTQKQESEGPLQMSQLDTTQLNELLKQQSFEYVQFQTLSNFQILLSVFNKIF 604

Query: 524 PSKTGGESTSNYQVKQTSNDEKYYEKKRVSTSKDEVNENGRKKRRISTSNEI------TN 577
                 +S+  Y + Q +  +   +++   +  D+ ++  R  + I     I        
Sbjct: 605 EKLEMKKSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNEDGPNT 664

Query: 578 NKECSERLPTSNLEVSQSNKDGDSETKRVPSNEILNEENSKKRRLSTSND-----EPTRT 632
           ++          L ++ S+ +  +E   V   +  + E+         ND     +    
Sbjct: 665 SRRTKRPKQIRLLSIADSSDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQEQLKSM 724

Query: 633 EKDNKRKRILEDIEDRIEEVVLGLDDADESGNE------LNEDQTSEAMDLKEVAEHQTE 686
             +    +I   + D++++  L ++   +   E      + +   S       +   Q  
Sbjct: 725 INELINSKISTFLRDQMDQFELKINALLDKILEEKVTRIIEQKLGSHTGKFSTLKRPQLY 784

Query: 687 SENREIVDKCTNVLDRVDKSTNILDNKGSSNKSSEAKRPNSSSKPNSSKYNEESNESSSL 746
                 V     V  ++  S    +    ++         S S         +S      
Sbjct: 785 MTEEHNVGFDMEVPKKLRTSGKYAETVKDNDDHQAMSTTASPSPEQDQ--EAKSYTDEQE 842

Query: 747 VKSNKDSPTETSITSESDKESQDEGNPIVHKPEETKDKNVRKSS 790
              +K   +   I  E    +    N  VH   ++ +K+ R + 
Sbjct: 843 FMLDKSIDSIEGIILEWFTPNAKYANQCVHSMNKSGNKSWRANC 886

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	947
1fl0_A	171	Endothelial-monocyte activating polypeptide II; RN	99.93
1ntg_A	172	Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligas	99.93
2e8g_A	241	Hypothetical protein PH0536; oligonucleotide/oligo	98.48
3ers_X	118	TRNA-binding protein YGJH; oligonucleotide-oligosa	98.08
1pxf_A	111	Hypothetical protein YGJH; oligonucleotide-oligosa	97.56
3g48_A	112	Chaperone CSAA; structural genomics, niaid structu	97.55
1pyb_A	111	Methionyl-tRNA synthetase beta subunit; oligonucle	97.42
1mkh_A	107	Metrs;, C-terminal domain of methionyl-tRNA synthe	97.35
2cwp_A	112	Metrs related protein; structural GEN riken struct	97.28
1gd7_A	109	CSAA protein; oligonucleotide-binding fold, functi	97.22
2nzh_A	113	Protein CSAA; beta barrel, oligonucleotide/oligosa	96.93
2q2i_A	116	AGR_C_4014P, secretion chaperone; beta barrel, OB	96.75
2q2h_A	131	AGR_C_4014P, secretion chaperone, phage-display de	96.63
1rqg_A	722	Methionyl-tRNA synthetase; translation, dimerizati	96.48
3bu2_A	199	Putative tRNA-binding protein; structural genomics	95.66

>1fl0_A Endothelial-monocyte activating polypeptide II; RNA-binding domain, OB-fold, tRNA synthetase complex, RNA binding protein; 1.50A {Homo sapiens} SCOP: b.40.4.4 PDB: 1e7z_A 1euj_A

Probab=99.93  E-value=4.3e-27  Score=222.13  Aligned_cols=124  Identities=28%  Similarity=0.376  Sum_probs=107.3

Q ss_pred             cCCccc--cccCCCC-CcccccchhHHHhhhhhhcccceEe------------EEecceeeeeccCCCceeee-------
Q psy15301        143 PTRKSS--RPISTGP-SSLSLGFGAAAFAGFVLAGFSGLVL------------VSLSTGDLDCGVLDARWEGK-------  200 (947)
Q Consensus       143 ptrksi--~pis~g~-ss~sLg~g~aaF~~~V~a~~~G~lr------------GIKSqGMVLCASNADhVELL-------  200 (947)
                      |..|++  -.|+.|+ -++.++.|++.|.  ..|...|++.            ||+|+||||||..+++++++       
T Consensus        20 P~AdkL~v~~VD~G~~~~rqIV~G~~n~v--~~a~lggk~v~~~~nlkp~klrGv~SeGMvLcs~~~~~~~il~~~~~~~   97 (171)
T 1fl0_A           20 PDADSLYVEEVDVGEIAPRTVVSGLVNHV--PLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPEKIEILAPPNGSV   97 (171)
T ss_dssp             TTEEEEEEEEEECSSSSCEEEEECCTTTS--CGGGGTTEEEEEECCSCCEESSSCEECCEECEEEETTEEEECBCCTTCC
T ss_pred             CCCCccEEEEEEcCCCcEEEEEECCCceE--cchhcCCEEEcCceEEeeEEEccEeccCEEEEEecCCCEEEEECCCCCC
Confidence            333555  6789998 4899999999883  4466666554            59999999999998888887       


Q ss_pred             ccceEEEcCCCCCCCCCCCcchhhHhhhcCCceecCCeeEEEcCeeeEEecCcceEEecccCCceeccc
Q psy15301        201 CQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNPLNNFSE  269 (947)
Q Consensus       201 PGERVfFEGFEGEPDpVLNPKKKIWEKVQPDLKTNDDGVATYKGkPF~TSGKAGpCTApSLKNA~Iyse  269 (947)
                      +|+||+|+||+++|+++||||||+||++||+|+|+++|+|+|||.||++.++ |+|++++|+||.|--|
T Consensus        98 ~G~~v~~~g~~~~p~~~l~~kkk~~e~~~~~l~t~~~~va~~k~~~~~~~~~-g~~~~~~l~~~~~~~~  165 (171)
T 1fl0_A           98 PGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGK-GVCRAQTMSNSGIKLE  165 (171)
T ss_dssp             TTCBCCCTTSCCCCCSSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETTT-EECBCSSCCSCEECC-
T ss_pred             CCCEEEeCCCCCCCccccCchhhhHHhhCCCcEECCCeEEEECCEEEEECCC-ccEEeeecCCCeEeee
Confidence            8999999999999999999999999999999999999999999999988754 9999999999988543

>1ntg_A Tyrrs, tyrosyl-tRNA synthetase; beta barrel, ligase; 2.21A {Homo sapiens} SCOP: b.40.4.4

Probab=99.93  E-value=1.7e-26  Score=218.07  Aligned_cols=122  Identities=23%  Similarity=0.303  Sum_probs=104.7

Q ss_pred             ccCCccc--cccCCCC-CcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCC---ceeee---
Q psy15301        142 FPTRKSS--RPISTGP-SSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDA---RWEGK---  200 (947)
Q Consensus       142 ~ptrksi--~pis~g~-ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNAD---hVELL---  200 (947)
                      ||..+++  -.++.|+ -++.++.|++.|...  ++..            ++++||+|+||||||..++   .|+|+   
T Consensus        23 hP~AdkL~v~~VD~G~~~~rqIvsG~~n~~~~--eel~G~~Vvvl~nlkp~klrGv~S~GMvLcs~~e~~~~~v~il~~~  100 (172)
T 1ntg_A           23 HPDADSLYVEKIDVGEAEPRTVVSGLVQFVPK--EELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPP  100 (172)
T ss_dssp             CTTCSSCEEEEEECSSSSCEEEEESCTTTSCG--GGTTTCEEEEECCBCCEEETTEEECCEECEEEEESSSEEEEECBCC
T ss_pred             CCCCCccEEEEEEeCCCcEEEEEECCCCCCCh--HHHCCCEEEEEEeEcceeecceecCCEEeEecccccCCCeEEEECC
Confidence            3444666  6788997 589999999987522  3333            3678899999999998876   57787   


Q ss_pred             ----ccceEEEcCC-CCCCCCCCCcchhhHhhhcCCceecCCeeEEEcCeeeEEecCcceEEecccCCceec
Q psy15301        201 ----CQRRWKLHGY-TRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNPLNNF  267 (947)
Q Consensus       201 ----PGERVfFEGF-EGEPDpVLNPKKKIWEKVQPDLKTNDDGVATYKGkPF~TSGKAGpCTApSLKNA~Iy  267 (947)
                          +|+||+|+|| +++|+++||||||+||++||+|+||++|+|+|+|.||+|+  +|+|++++|+|+.|-
T Consensus       101 ~~~~~G~~v~~~g~~~~~p~~~l~~kkk~~e~~~~~l~t~~~~~a~~k~~~~~~~--~g~~~~~~l~~~~i~  170 (172)
T 1ntg_A          101 AGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTK--LGSISCKSLKGGNIS  170 (172)
T ss_dssp             BTCCTTCEEEETTCSSCCCCSSBCGGGCHHHHHHTTEEECTTSBEEETTEEEEET--TEECBCSSCTTCEEE
T ss_pred             CCCCCCCEEEeCCcCCCCCccccCcchhhHHhhCCCcEECCCCEEEECCEEEEeC--CCCEEeeecCCCEEE
Confidence                8999999999 7999999999999999999999999999999999999997  499999999999984

>2e8g_A Hypothetical protein PH0536; oligonucleotide/oligosaccharide-binding fold, alpha-helices bundle, structural genomics, NPPSFA; 1.70A {Pyrococcus horikoshii}

Probab=98.48  E-value=9.3e-09  Score=102.43  Aligned_cols=83  Identities=12%  Similarity=0.023  Sum_probs=59.4

Q ss_pred             ccCCccc--cccCCCCCcccccchhHHHhh---hhhhcc-cceEeEEecceeeeeccCCCceeee---ccceEEEcCCCC
Q psy15301        142 FPTRKSS--RPISTGPSSLSLGFGAAAFAG---FVLAGF-SGLVLVSLSTGDLDCGVLDARWEGK---CQRRWKLHGYTR  212 (947)
Q Consensus       142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~---~V~a~~-~G~lrGIKSqGMVLCASNADhVELL---PGERVfFEGFEG  212 (947)
                      ||..+++  -.|+.|.-.+.++.|++.|.-   .|.|-+ .++++||.|+|||+||+.    .+.   .|+.+.|+  ++
T Consensus       149 hP~AdKL~v~~VD~G~~~rqIV~Ga~n~~~G~vVvVAnLpp~klrGv~SeGMlcsa~E----gl~~~~~G~I~~Lp--~~  222 (241)
T 2e8g_A          149 HPSADRLLVTNVNIGERAVTVVTNDLTVKEGNRVAVALLPPRNFFGIVSEGMFLGAGE----GVLKNVKGEIGGLP--KG  222 (241)
T ss_dssp             CTTCTTCEEEEEECSSCEEEEEESCTTCCTTCEEEEECCCCEEETTEEECCEECEETT----EECCBCBSCTTSCC--BS
T ss_pred             CCCCCccEEEEEEeCCceEEEEECCccccCCCEEEEEECCCcccCCcccCcEEeECcc----CCCCCCCCcEEECC--CC
Confidence            5555677  678898877889998876421   011111 478999999999999974    333   45433332  48


Q ss_pred             CCCCCCCcchhhHhhhcC
Q psy15301        213 NPDPVLNPKKKIFETVAP  230 (947)
Q Consensus       213 EPDpVLNPKKKIWEKVQP  230 (947)
                      .|+++||||||+||+++.
T Consensus       223 ~p~~~lnpkkk~~e~~~~  240 (241)
T 2e8g_A          223 IPLEALNETRNAVEAFLK  240 (241)
T ss_dssp             CCGGGGHHHHHHHHHHHC
T ss_pred             CchhhcCchhhHHHHHhc
Confidence            999999999999999974

>1pxf_A Hypothetical protein YGJH; oligonucleotide-oligosaccharide binding fold, OB fold, beta- barrel; 1.87A {Escherichia coli} PDB: 3ers_X

Probab=97.56  E-value=9.4e-06  Score=72.15  Aligned_cols=67  Identities=10%  Similarity=-0.038  Sum_probs=44.8

Q ss_pred             ccccccccCC----------ccc--cccCCCCCcccccchhHHHhh-------------hhhhcccceEeEEecceeeee
Q psy15301        136 LEASMIFPTR----------KSS--RPISTGPSSLSLGFGAAAFAG-------------FVLAGFSGLVLVSLSTGDLDC  190 (947)
Q Consensus       136 lSa~~I~ptr----------ksi--~pis~g~ss~sLg~g~aaF~~-------------~V~a~~~G~lrGIKSqGMVLC  190 (947)
                      |+.++|++++          +++  -.++.|.-.+.++.|+|.+..             +++.   .+++|+.|+|||||
T Consensus         9 f~k~dlrVG~I~~~e~hp~adkL~v~~Vd~G~~~~qiv~g~a~~~~~~~l~G~~v~~~~nikp---~klrGv~S~GMlL~   85 (111)
T 1pxf_A            9 FARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQK---AKMRGETSECMLLC   85 (111)
T ss_dssp             HHHSCEEEEEEEEEECCTTCTTCCEEEEEETTEEEEEECCCCTTSHHHHHTTCEEEEETTCSC---CCBTTBCCCCCBCE
T ss_pred             hhcccEEEEEEEEEEECCCCCeEEEEEEEeCCCceEEEEeccCcccchhcCCCEEEEEEEEec---ccCCCEecceEEEE
Confidence            4455555554          555  567778766778888654432             3333   47899999999999


Q ss_pred             ccCCCc--eeee-------ccceE
Q psy15301        191 GVLDAR--WEGK-------CQRRW  205 (947)
Q Consensus       191 ASNADh--VELL-------PGERV  205 (947)
                      |..+++  +.|+       +|.||
T Consensus        86 a~~ed~~~~~l~~p~~~~~~G~~v  109 (111)
T 1pxf_A           86 AETDDGSESVLLTPERMMPAGVRV  109 (111)
T ss_dssp             EECTTSCCEEECCCSSCCCTTCBC
T ss_pred             ecccCCCcEEEEcCCCCCCCCCEe
Confidence            998764  5555       56665

>3g48_A Chaperone CSAA; structural genomics, niaid structural centers for infectious diseases, center for structural GENO infectious diseases; 1.50A {Bacillus anthracis} SCOP: b.40.4.4

Probab=97.55  E-value=5.5e-06  Score=73.97  Aligned_cols=67  Identities=10%  Similarity=-0.197  Sum_probs=48.3

Q ss_pred             ccccccccCC----------cc-c--cccCCCC-CcccccchhHHH-------------hhhhhhcccceEeEEecceee
Q psy15301        136 LEASMIFPTR----------KS-S--RPISTGP-SSLSLGFGAAAF-------------AGFVLAGFSGLVLVSLSTGDL  188 (947)
Q Consensus       136 lSa~~I~ptr----------ks-i--~pis~g~-ss~sLg~g~aaF-------------~~~V~a~~~G~lrGIKSqGMV  188 (947)
                      |+.++|++++          ++ +  -.++.|+ -.+.++.|++.+             +++++.   ++++|++|+|||
T Consensus        10 F~kldirVG~I~~~e~hp~adkpL~~~~Vd~G~~~~~qIv~G~~~~~~~~~l~G~~v~~~~nlkp---~kirGv~S~GMl   86 (112)
T 3g48_A           10 FLTLDLRIGTVTHAEEFKEARVPAIRLEIDFGELGMKQSSAQITKRYNPEDLIGQQIVAVVNFPP---KRVAGFKSEVLV   86 (112)
T ss_dssp             HHTCCEEEEEEEEEEEEEETTEEEEEEEEECGGGCEEEEEECCTTTCCHHHHTTCEEEEECCSCC---EEETTEEECSEE
T ss_pred             hhceEEEEEEEEEEEECCCCCCeEEEEEEEcCCCcEEEEEeCCccccChhHcCCCEEEEEccccc---eeECCeecCcEE
Confidence            5566666655          55 4  6788886 578899997543             223333   488999999999


Q ss_pred             eeccCCC-ceeee-------ccceE
Q psy15301        189 DCGVLDA-RWEGK-------CQRRW  205 (947)
Q Consensus       189 LCASNAD-hVELL-------PGERV  205 (947)
                      |||++++ +++|+       +|+||
T Consensus        87 ~s~~~~~~~~~ll~p~~~~~~G~~i  111 (112)
T 3g48_A           87 LGGVPEAGDVVLLQPNMELPNGTKI  111 (112)
T ss_dssp             CEEEEETTEEEECCCSSCCCTTCBC
T ss_pred             eEeecCCCCEEEEeCCCCCCCCCCc
Confidence            9998766 48888       68876

>1pyb_A Methionyl-tRNA synthetase beta subunit; oligonucleotide, oligosaccharide-binding fold, OB-fold, beta-barrel, RNA binding protein; 2.50A {Aquifex aeolicus} SCOP: b.40.4.4

Probab=97.42  E-value=2e-05  Score=69.86  Aligned_cols=62  Identities=10%  Similarity=-0.018  Sum_probs=44.9

Q ss_pred             ccCCccc--cccCCCCCcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCCceeee-------
Q psy15301        142 FPTRKSS--RPISTGPSSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDARWEGK-------  200 (947)
Q Consensus       142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNADhVELL-------  200 (947)
                      ||..+++  -.++.|+-.+.++.|++.|.  +.....            .+++|+.|+||||||+.++++.++       
T Consensus        28 hp~adkL~~~~Vd~G~~~rqIv~G~~n~~--~~~al~G~~v~~~~nlkp~klrGv~S~GMl~sa~e~~~~~il~~~~~~~  105 (111)
T 1pyb_A           28 VEGSEKLLKLTLSLGDEERTVVAGIAKYY--TPEELVGKKIVIVANLKPRKIFGIESQGMILAASDGENLSVIVPDRDVK  105 (111)
T ss_dssp             CSSCSCCEEEEEEETTEEEEEEECCTTTS--CHHHHTTCEEEEETTSCSSCTTSCCBSSEECEEECSSCEEEEEESSCCC
T ss_pred             CCCCCccEEEEEEeCCcEEEEEECCcccc--CccccCCCEEECcEeecceEEccEeeccEEEEeccCCceEEEECCCCCC
Confidence            4444666  67888887799999998875  222223            366779999999999986677776       


Q ss_pred             ccceE
Q psy15301        201 CQRRW  205 (947)
Q Consensus       201 PGERV  205 (947)
                      +|++|
T Consensus       106 ~G~~v  110 (111)
T 1pyb_A          106 EGAKL  110 (111)
T ss_dssp             TTEEC
T ss_pred             CCCCC
Confidence            57665

>1mkh_A Metrs;, C-terminal domain of methionyl-tRNA synthetase; beta barrel, dimerization domain, ligase; 2.01A {Pyrococcus abyssi} SCOP: b.40.4.4

Probab=97.35  E-value=4.9e-05  Score=67.10  Aligned_cols=62  Identities=13%  Similarity=-0.040  Sum_probs=43.3

Q ss_pred             ccCCccc--cccCCCCCcccccchhHHHhhhhhhcc------------cceEeEEecceeeeeccCCCceeee-------
Q psy15301        142 FPTRKSS--RPISTGPSSLSLGFGAAAFAGFVLAGF------------SGLVLVSLSTGDLDCGVLDARWEGK-------  200 (947)
Q Consensus       142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~~V~a~~------------~G~lrGIKSqGMVLCASNADhVELL-------  200 (947)
                      ||..+++  -.++.|+-.+.++.|++.|.-.  ...            ..+++|+.|+||+|||++.+.+.+|       
T Consensus        24 hp~adkL~~~~Vd~G~~~rqIv~G~~n~~~~--~al~G~~v~~~~nlkp~klrGv~S~GMl~s~~~~~gi~~l~p~~~~~  101 (107)
T 1mkh_A           24 HPNADKLYVVKVDLGDEVRTLVAGLKKYYKP--EELLNRYVVVVANLEPKKLRGIGSQGMLLAADDGERVALLMPDKEVK  101 (107)
T ss_dssp             CTTCSSCEEEEEECSSCEEEEEECCTTTCCH--HHHTTCEEEEETTSCCEEC-CCEECCCBCEEECSSCEEECCCSSCCC
T ss_pred             CCCCCccEEEEEEeCCeEEEEEeCCccccCh--hhcCCCEEECCeeEcceEEcCeeeccEEEEccCCCcEEEEeCCCCCC
Confidence            4555666  6789998789999998775321  111            2477889999999999765567666       


Q ss_pred             ccceE
Q psy15301        201 CQRRW  205 (947)
Q Consensus       201 PGERV  205 (947)
                      +|++|
T Consensus       102 ~G~~i  106 (107)
T 1mkh_A          102 LGAKV  106 (107)
T ss_dssp             TTCEE
T ss_pred             CCCCC
Confidence            56665

>2cwp_A Metrs related protein; structural GEN riken structural genomics/proteomics initiative, RSGI; 2.10A {Pyrococcus horikoshii}

Probab=97.28  E-value=8.8e-05  Score=66.03  Aligned_cols=62  Identities=13%  Similarity=-0.073  Sum_probs=44.5

Q ss_pred             ccCCccc--cccCCCCCcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCC-ceeee------
Q psy15301        142 FPTRKSS--RPISTGPSSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDA-RWEGK------  200 (947)
Q Consensus       142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNAD-hVELL------  200 (947)
                      ||..+++  -.++.|+-.+.++.|++.|..  .....            ++++|+.|+||||||..++ .+.++      
T Consensus        28 hp~adkL~~~~VD~G~~~rqIV~G~~n~~~--~~~l~G~~v~~~~nlkp~klrGv~S~GMl~sa~~~~~~~~il~~~~~~  105 (112)
T 2cwp_A           28 IKRTKKLIKLIVDFGNEERTIVTGIADQIP--PEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGKVYLIPVPEEV  105 (112)
T ss_dssp             CTTCSSCEEEEEECSSCEEEEEECCTTTSC--GGGTTTCEEEEECSSCCEEETTEEECSEECCEECTTSCEECCBCCTTS
T ss_pred             CCCCCccEEEEEEeCCeEEEEEECCccccC--hhhcCCCEEECeEEEccceeCCEecccEEEEeecCCCcEEEEECCCCC
Confidence            4444666  678999877999999987732  23333            3667799999999998755 46666      


Q ss_pred             -ccceE
Q psy15301        201 -CQRRW  205 (947)
Q Consensus       201 -PGERV  205 (947)
                       +|++|
T Consensus       106 ~~G~~i  111 (112)
T 2cwp_A          106 PVGARV  111 (112)
T ss_dssp             CTTCEE
T ss_pred             CCCCCC
Confidence             67765

>1gd7_A CSAA protein; oligonucleotide-binding fold, functional dimer, hydrophobic cavity, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: b.40.4.4

Probab=97.22  E-value=5.3e-05  Score=67.15  Aligned_cols=57  Identities=12%  Similarity=-0.123  Sum_probs=41.4

Q ss_pred             ccCCccc---cccCCCC-CcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCC-ceeee
Q psy15301        142 FPTRKSS---RPISTGP-SSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDA-RWEGK  200 (947)
Q Consensus       142 ~ptrksi---~pis~g~-ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNAD-hVELL  200 (947)
                      ||..+++   -.++.|+ -++.++.|++.|.-  .....            ++++|++|+||+|||..++ .+.+|
T Consensus        23 hp~adkL~~~~~Vd~G~~~~rqIv~G~~n~~~--~~~l~G~~v~~~~nlkp~klrGv~S~GMl~sa~~~~~~i~~l   96 (109)
T 1gd7_A           23 HEKARKPSYKLWVDLGPLGVKQSSAQITELYR--PEDLVGRLVVCAVNLGAKRVAGFLSEVLVLGVPDEAGRVVLL   96 (109)
T ss_dssp             CTTCSSCCEEEEEECGGGCEEEEEECCTTTCC--HHHHTTCEEEEECSSCCEEETTEEECSEECEEECTTSCEEEE
T ss_pred             CCCCccccEEEEEEcCCCcEEEEEECCccccC--hhhcCCCEEEeeEecCceEeccEeecCEEEEeecCCCcEEEE
Confidence            4555776   7899997 67999999977632  12222            4677899999999998764 37666

>2nzh_A Protein CSAA; beta barrel, oligonucleotide/oligosaccharide binding fold, H chaperone; 1.90A {Bacillus subtilis} PDB: 2nzo_A

Probab=96.93  E-value=9.5e-05  Score=65.90  Aligned_cols=62  Identities=11%  Similarity=-0.077  Sum_probs=43.6

Q ss_pred             ccCCccc---cccCCCC--CcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCC-ceeee---
Q psy15301        142 FPTRKSS---RPISTGP--SSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDA-RWEGK---  200 (947)
Q Consensus       142 ~ptrksi---~pis~g~--ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNAD-hVELL---  200 (947)
                      ||..+++   -.++.|+  -.+.++.|++.|..  .....            ++++|++|+||||||+.++ .++++   
T Consensus        26 hp~adkL~~~~~Vd~G~~~~~rqIv~G~~n~~~--~~~l~G~~v~~~~nlkp~kirGv~S~GMl~sa~~~~~~i~ll~~~  103 (113)
T 2nzh_A           26 FPEARVPAIKLVIDFGTEIGIKQSSAQITKRYK--PEGLINKQVIAVVNFPPRRIAGFKSEVLVLGGIPGQGDVVLLQPD  103 (113)
T ss_dssp             ETTSSSCEEEEEEECHHHHCEEEEEECCTTTCC--HHHHTTCEEEEETTSCCEEETTEEECSEECEEEEETTEEEEEEES
T ss_pred             CCCCCcccEEEEEEeCCCCcEEEEEECCCcccC--HHHhCCCEEEeeEEEcceEECCEEeCCEEEEeecCCCCEEEEECC
Confidence            4555665   6788886  37999999987632  12222            4677899999999998754 47666   


Q ss_pred             ----ccceE
Q psy15301        201 ----CQRRW  205 (947)
Q Consensus       201 ----PGERV  205 (947)
                          +|++|
T Consensus       104 ~~~~~G~~i  112 (113)
T 2nzh_A          104 QPVPNGTKI  112 (113)
T ss_dssp             SCCCTTCEE
T ss_pred             CCCCCCCCC
Confidence                67776

>2q2i_A AGR_C_4014P, secretion chaperone; beta barrel, OB fold, homodimer, protein secretio; 1.55A {Agrobacterium tumefaciens str}

Probab=96.75  E-value=0.00016  Score=64.71  Aligned_cols=57  Identities=11%  Similarity=-0.128  Sum_probs=40.1

Q ss_pred             ccCCccc---cccCCCC--CcccccchhHHHhhhhhhccc------------ceEeEEecceeeeeccCCC-ceeee
Q psy15301        142 FPTRKSS---RPISTGP--SSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCGVLDA-RWEGK  200 (947)
Q Consensus       142 ~ptrksi---~pis~g~--ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCASNAD-hVELL  200 (947)
                      ||..+++   -.++.|+  -.+.++.|++.|.  +.....            .+++|++|+||||||+.++ .+.+|
T Consensus        29 hp~adkL~~~~~VD~G~~~~~rqIv~G~~n~~--~~~~l~G~~v~~~~nlkp~kirGv~S~GMl~sa~~~~~~i~ll  103 (116)
T 2q2i_A           29 FPEARKPAIKVKIDFGPEIGIKKSSAQITVHY--TPESLVGRQVLGVVNFPPRQIGPFRSEVLTLGFADANGDIVLA  103 (116)
T ss_dssp             CTTSSSCCEEEEEECHHHHCEEEEEESCTTTC--CHHHHTTCEEEEECCSCCEEETTEEECCEECEEECTTSCEEEE
T ss_pred             CCCCCCccEEEEEEeCCCCcEEEEEECCcCcc--ChhhcCCCEEECceEEcceEECCEEeCCEEEEeecCCCcEEEE
Confidence            4444665   5788886  3799999998773  222222            3677899999999998654 47666

>2q2h_A AGR_C_4014P, secretion chaperone, phage-display derived peptid; beta barrel, OB fold, homodimer, protein secretio; HET: CIT; 1.65A {Agrobacterium tumefaciens str}

Probab=96.63  E-value=0.00022  Score=65.36  Aligned_cols=64  Identities=9%  Similarity=-0.214  Sum_probs=44.0

Q ss_pred             cccccccccCC----------ccc---cccCCCC--CcccccchhHHHhhhhhhccc------------ceEeEEeccee
Q psy15301        135 CLEASMIFPTR----------KSS---RPISTGP--SSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGD  187 (947)
Q Consensus       135 ClSa~~I~ptr----------ksi---~pis~g~--ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGM  187 (947)
                      =|+.++|++++          |++   -.++.|+  -.+.++.|++.|.-  .....            ++++|++|+||
T Consensus        27 df~k~~lrVG~I~~~e~hP~AdkL~~v~~VD~G~~~~~rqIV~G~~n~~~--p~al~G~~v~~~~nlkp~kirGv~SeGM  104 (131)
T 2q2h_A           27 DFEKVDIRVGTIVEAVPFPEARKPAIKVKIDFGPEIGIKKSSAQITVHYT--PESLVGRQVLGVVNFPPRQIGPFRSEVL  104 (131)
T ss_dssp             HHHTSCEEEEEEEEEEECTTCSSCCEEEEEECHHHHCEEEEEESCTTTCC--HHHHTTCEEEEECCSCCEEETTEEECCE
T ss_pred             HhhccCEEEEEEEEEEECCCCCcccEEEEEEECCCCcEEEEEECCCcccC--hhhcCCCEEECceEEcceEECCEEeCcE
Confidence            35556665554          554   5688886  37999999987632  22222            46778999999


Q ss_pred             eeeccCCC-ceeee
Q psy15301        188 LDCGVLDA-RWEGK  200 (947)
Q Consensus       188 VLCASNAD-hVELL  200 (947)
                      ||||++++ .+.+|
T Consensus       105 l~sa~~~~~gi~lL  118 (131)
T 2q2h_A          105 TLGFADANGDIVLA  118 (131)
T ss_dssp             ECEEECTTSCEEEE
T ss_pred             EEEeecCCCcEEEE
Confidence            99998754 47666

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1

Probab=96.48  E-value=0.00044  Score=75.67  Aligned_cols=66  Identities=11%  Similarity=-0.115  Sum_probs=0.0

Q ss_pred             cccccccccccCC----------ccc--cccCCCCCcccccchhHHHhhhhhhccc------------ceEeEEecceee
Q psy15301        133 SGCLEASMIFPTR----------KSS--RPISTGPSSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDL  188 (947)
Q Consensus       133 ~gClSa~~I~ptr----------ksi--~pis~g~ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMV  188 (947)
                      +.=|+.++|+++.          +++  -.|+.|.-.+.++.|++.|..  .+...            ++++||.|+|||
T Consensus       620 ~~~f~k~~~~vg~i~~~~~~p~adkl~~~~vd~G~~~~~iv~g~~~~~~--~~~l~G~~v~~~~nl~~~k~~g~~S~gM~  697 (722)
T 1rqg_A          620 FDDFAKLDLRVGKIIEVKDHPNADKLYVVKVDLGDEVRTLVAGLKKYYK--PEELLNRYVVVVANLEPKKLRGIGSQGML  697 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhHhhhcceEEEEEEEEEeCCCCCcceEEEEEcCCceEEEEECCcccCC--HHHcCCCEEeCeeEEcceeeCCcccCeEE
Confidence            3446778888876          445  678889877999999987731  12222            367889999999


Q ss_pred             eeccCCCceeee
Q psy15301        189 DCGVLDARWEGK  200 (947)
Q Consensus       189 LCASNADhVELL  200 (947)
                      |||+.++++.+|
T Consensus       698 ~~~~~~~~i~~l  709 (722)
T 1rqg_A          698 LAADDGERVALL  709 (722)
T ss_dssp             ------------
T ss_pred             EEeeCCCcEEEe
Confidence            999766667666

>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp}

Probab=95.66  E-value=0.0015  Score=63.76  Aligned_cols=51  Identities=14%  Similarity=0.107  Sum_probs=37.5

Q ss_pred             ccCCccc--cccCCCCCcccccchhHHHhh----------hhhhc----ccceEeEEecceeeeecc
Q psy15301        142 FPTRKSS--RPISTGPSSLSLGFGAAAFAG----------FVLAG----FSGLVLVSLSTGDLDCGV  192 (947)
Q Consensus       142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~----------~V~a~----~~G~lrGIKSqGMVLCAS  192 (947)
                      ||..|++  -.++.|.-++.++.|++-|.-          +++.+    -.+++||+.|+||+++|.
T Consensus       104 hP~ADkL~v~~VdvG~~~~qIV~Ga~n~~~G~kVvva~~Ga~lp~g~nIk~~KlrGv~S~GMlcSa~  170 (199)
T 3bu2_A          104 HPDADKLSVLSVDVATEKLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMK  170 (199)
T ss_dssp             CTTTSSCEEEEEECSSCEEEEEECCTTCCTTCEEEEECTTCBCTTSCBCCEEEETTEEEESEECCTT
T ss_pred             CCCCCEEEEEEEEeCCEEEEEEeCCchhhCCCEEEEEecCCCccCCceEeeeEEcCceeccEEeehh
Confidence            7888888  789999778999999887632          11100    125999999999987775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	947
d1fl0a_	164	b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId	3e-10
d1ntga_	171	b.40.4.4 (A:) C-terminal domain of metazoan tyrosy	5e-07

>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: EMAP II
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (139), Expect = 3e-10
 Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 207 LHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVN 262
              +   PD  LNPKKKI+E + PDL TND   ATYKG  + V   +G   +Q ++
Sbjct: 104 FDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEV-KGKGVCRAQTMS 158

>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 214 PDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTS 258
           PD  L PKKK+FE +  D K ++   A +K   +  +       S
Sbjct: 118 PDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKS 162

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	947
d1fl0a_	164	EMAP II {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1ntga_	171	C-terminal domain of metazoan tyrosyl-tRNA synthet	99.79
d1mkha_	107	C-terminal domain of methionyl-tRNA synthetase, Me	97.68
d1pyba_	107	Structure-specific tRNA-binding protein TRBP111 {A	97.65
d1pxfa_	111	Structure-specific tRNA-binding protein TRBP111 {E	97.56
d1gd7a_	109	TRBP111 homolog CsaA {Thermus thermophilus [TaxId:	97.31

>d1fl0a_ b.40.4.4 (A:) EMAP II {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: EMAP II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.9e-23  Score=187.31  Aligned_cols=128  Identities=25%  Similarity=0.317  Sum_probs=109.4

Q ss_pred             ccccccccCC----------ccc--cccCCCC-CcccccchhHHHhhhhhhcccc------------eEeEEecceeeee
Q psy15301        136 LEASMIFPTR----------KSS--RPISTGP-SSLSLGFGAAAFAGFVLAGFSG------------LVLVSLSTGDLDC  190 (947)
Q Consensus       136 lSa~~I~ptr----------ksi--~pis~g~-ss~sLg~g~aaF~~~V~a~~~G------------~lrGIKSqGMVLC  190 (947)
                      |+.++|+++.          +++  ..|+.|. ..+.+.+|+..|...  +...|            +++|+.|+|||||
T Consensus         3 f~kldirVGkI~~~~~hP~adkL~v~~VD~G~~~~~~Iv~g~~~~~~~--~~l~g~~v~~~~nlkp~kirGv~SeGMlls   80 (164)
T d1fl0a_           3 VSRLDLRIGCIITARKHPDADSLYVEEVDVGEIAPRTVVSGLVNHVPL--EQMQNRMVILLCNLKPAKMRGVLSQAMVMC   80 (164)
T ss_dssp             GGGSCEEEEEEEEEEEETTEEEEEEEEEECSSSSCEEEEECCTTTSCG--GGGTTEEEEEECCSCCEESSSCEECCEECE
T ss_pred             ccceeEEEEEEEEEEECCCCCcceEEEEEccCCceEEEEeeccccccc--hhccCccccccccccccccCceEcceEEEe
Confidence            4455665554          555  6889987 678999998876543  34444            5677999999999


Q ss_pred             ccCCCceeee-------ccceEEEcCCCCCCCCCCCcchhhHhhhcCCceecCCeeEEEcCeeeEEecCcceEEecccCC
Q psy15301        191 GVLDARWEGK-------CQRRWKLHGYTRNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNP  263 (947)
Q Consensus       191 ASNADhVELL-------PGERVfFEGFEGEPDpVLNPKKKIWEKVQPDLKTNDDGVATYKGkPF~TSGKAGpCTApSLKN  263 (947)
                      |+..++++++       +|+||+|+||+++|+++|+||+|+||.++|+|++|++|+++|+|.+|.+.+ +|+|++++|++
T Consensus        81 a~~~~~~~ll~~p~~~~~G~~v~~~~~~~~~~~~l~~k~~~~~~i~~~l~~n~~~~~~~~g~~~~~~~-~g~~~~~~l~~  159 (164)
T d1fl0a_          81 ASSPEKIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKG-KGVCRAQTMSN  159 (164)
T ss_dssp             EEETTEEEECBCCTTCCTTCBCCCTTSCCCCCSSCCTTTCTHHHHGGGEEECTTSBEEETTEECEETT-TEECBCSSCCS
T ss_pred             eeCCCccEEEeCCCCCCCCCEEEecccCCCCchhcCcccchhHhhccCcEECCCCEEEECCEEeeecc-CCCEEcccCCC
Confidence            9999998888       899999999999999999999999999999999999999999999998875 49999999999


Q ss_pred             cee
Q psy15301        264 LNN  266 (947)
Q Consensus       264 A~I  266 (947)
                      |.|
T Consensus       160 ~~I  162 (164)
T d1fl0a_         160 SGI  162 (164)
T ss_dssp             CEE
T ss_pred             Cee
Confidence            987

>d1ntga_ b.40.4.4 (A:) C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of metazoan tyrosyl-tRNA synthetase, TyrRS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.9e-20  Score=170.84  Aligned_cols=122  Identities=23%  Similarity=0.306  Sum_probs=101.5

Q ss_pred             ccCCccc--cccCCCC-CcccccchhHHHhhhhhhcccc------------eEeEEecceeeeeccCCC---ceeee---
Q psy15301        142 FPTRKSS--RPISTGP-SSLSLGFGAAAFAGFVLAGFSG------------LVLVSLSTGDLDCGVLDA---RWEGK---  200 (947)
Q Consensus       142 ~ptrksi--~pis~g~-ss~sLg~g~aaF~~~V~a~~~G------------~lrGIKSqGMVLCASNAD---hVELL---  200 (947)
                      ||..+++  ..|+.|. ..+.+.+|+..|.-.  +.+.|            +++||.|+||||||+..+   +++++   
T Consensus        22 hP~adkL~v~~Vd~G~~~~~~Iv~g~~~~~~~--~~~~g~~v~~~~nlk~~kirGv~SeGMl~s~~e~g~~~~~~~~~~p   99 (171)
T d1ntga_          22 HPDADSLYVEKIDVGEAEPRTVVSGLVQFVPK--EELQDRLVVVLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPP   99 (171)
T ss_dssp             CTTCSSCEEEEEECSSSSCEEEEESCTTTSCG--GGTTTCEEEEECCBCCEEETTEEECCEECEEEEESSSEEEEECBCC
T ss_pred             CCCCCeeEEEEEEeCCCceEEEEeeccccccc--chhcccccceeeeccccccCccccceEEeecccCCCccceeeecCC
Confidence            3444666  6788886 677888887765433  33434            677899999999998643   46776   


Q ss_pred             ----ccceEEEcCCC-CCCCCCCCcchhhHhhhcCCceecCCeeEEEcCeeeEEecCcceEEecccCCceec
Q psy15301        201 ----CQRRWKLHGYT-RNPDPVLNPKKKIFETVAPDLKTNDSNQATYKGKVWTVENVEGFVTSQRVNPLNNF  267 (947)
Q Consensus       201 ----PGERVfFEGFE-GEPDpVLNPKKKIWEKVQPDLKTNDDGVATYKGkPF~TSGKAGpCTApSLKNA~Iy  267 (947)
                          +|+||+|+||+ +.|+..+|||+|+|+.++++|.|+.+|+|+|||.+|.|+  +|+|+++++.+|.|=
T Consensus       100 ~~~~~G~~v~~~~~~~~~~~~~~~~k~k~~~~~~~~l~v~~d~~a~~k~~~~~t~--~g~~~~~~i~~~~iS  169 (171)
T d1ntga_         100 AGSAPGEHVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTK--LGSISCKSLKGGNIS  169 (171)
T ss_dssp             BTCCTTCEEEETTCSSCCCCSSBCGGGCHHHHHHTTEEECTTSBEEETTEEEEET--TEECBCSSCTTCEEE
T ss_pred             CCCCCcCEEEECCccccCcccccCcccchHHHhcccccCCCCCEEEECCeeeecC--CCCEEeccCCCCEEe
Confidence                99999999996 689999999999999999999999999999999999997  499999999999873

>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: C-terminal domain of methionyl-tRNA synthetase, MetRS-CD
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.68  E-value=4.7e-06  Score=71.34  Aligned_cols=61  Identities=13%  Similarity=-0.053  Sum_probs=46.3

Q ss_pred             ccCCccc--cccCCCCCcccccchhHHHhhh-------------hhhcccceEeEEecceeeeeccCCCceeee------
Q psy15301        142 FPTRKSS--RPISTGPSSLSLGFGAAAFAGF-------------VLAGFSGLVLVSLSTGDLDCGVLDARWEGK------  200 (947)
Q Consensus       142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~~-------------V~a~~~G~lrGIKSqGMVLCASNADhVELL------  200 (947)
                      ||..+++  -.++.|.-.+.+..|++.|..-             ++.   .+++||+|+||+|||..++++.++      
T Consensus        24 hp~adkL~~~~Vd~G~~~~~Iv~G~~~~~~~e~liG~~v~~v~nlk~---~kirGv~SeGMl~s~~e~~~~~ll~~~~~~  100 (107)
T d1mkha_          24 HPNADKLYVVKVDLGDEVRTLVAGLKKYYKPEELLNRYVVVVANLEP---KKLRGIGSQGMLLAADDGERVALLMPDKEV  100 (107)
T ss_dssp             CTTCSSCEEEEEECSSCEEEEEECCTTTCCHHHHTTCEEEEETTSCC---EEC-CCEECCCBCEEECSSCEEECCCSSCC
T ss_pred             cCCCCceEEEEEEcCCeEEEEEEEeeeEEcCcccCCCEEEeecCCCc---ccCCCccCCEEEEEeecCCcEEEEECCCCC
Confidence            4444666  6788898888999998776542             222   378999999999999998898887      


Q ss_pred             -ccceE
Q psy15301        201 -CQRRW  205 (947)
Q Consensus       201 -PGERV  205 (947)
                       +|+||
T Consensus       101 ~~G~~i  106 (107)
T d1mkha_         101 KLGAKV  106 (107)
T ss_dssp             CTTCEE
T ss_pred             CCCCcc
Confidence             68776

>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.65  E-value=2.8e-06  Score=72.91  Aligned_cols=61  Identities=10%  Similarity=-0.030  Sum_probs=45.1

Q ss_pred             ccCCccc--cccCCCCCcccccchhHHHhh-------------hhhhcccceEeEEecceeeeeccCCCceeee------
Q psy15301        142 FPTRKSS--RPISTGPSSLSLGFGAAAFAG-------------FVLAGFSGLVLVSLSTGDLDCGVLDARWEGK------  200 (947)
Q Consensus       142 ~ptrksi--~pis~g~ss~sLg~g~aaF~~-------------~V~a~~~G~lrGIKSqGMVLCASNADhVELL------  200 (947)
                      ||..+++  -.|+.|.-.+.+..|++.+..             |++   ..+++|+.|+||||||++++++.++      
T Consensus        24 hp~adkL~~~~VD~G~~~~~iv~g~~~~~~~e~liGk~v~~v~Nlk---p~kirG~~SegMil~~~d~~~~~ll~p~~~~  100 (107)
T d1pyba_          24 VEGSEKLLKLTLSLGDEERTVVAGIAKYYTPEELVGKKIVIVANLK---PRKIFGIESQGMILAASDGENLSVIVPDRDV  100 (107)
T ss_dssp             CSSCSCCEEEEEEETTEEEEEEECCTTTSCHHHHTTCEEEEETTSC---SSCTTSCCBSSEECEEECSSCEEEEEESSCC
T ss_pred             ccccCceEEEEeecCCcccceEEeeecccChhHhcCcEEEEEeccc---cceECCeeeeEEEEEEEcCCceEEEeCCCCC
Confidence            3444666  678888877788888766543             222   3478899999999999998888877      


Q ss_pred             -ccceE
Q psy15301        201 -CQRRW  205 (947)
Q Consensus       201 -PGERV  205 (947)
                       +|.||
T Consensus       101 ~~G~~i  106 (107)
T d1pyba_         101 KEGAKL  106 (107)
T ss_dssp             CTTEEC
T ss_pred             CCCCcc
Confidence             67776

>d1pxfa_ b.40.4.4 (A:) Structure-specific tRNA-binding protein TRBP111 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: Structure-specific tRNA-binding protein TRBP111
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=2.6e-06  Score=73.48  Aligned_cols=68  Identities=10%  Similarity=-0.041  Sum_probs=47.2

Q ss_pred             ccccccccCC----------ccc--cccCCCCCcccccchhHHHhhhhhhccc------------ceEeEEecceeeeec
Q psy15301        136 LEASMIFPTR----------KSS--RPISTGPSSLSLGFGAAAFAGFVLAGFS------------GLVLVSLSTGDLDCG  191 (947)
Q Consensus       136 lSa~~I~ptr----------ksi--~pis~g~ss~sLg~g~aaF~~~V~a~~~------------G~lrGIKSqGMVLCA  191 (947)
                      |+.++|+++.          +++  -.|+.|.-.+.+..|++.|..-  +...            ++++||.|+||+|||
T Consensus         9 F~kldirVG~I~~~e~hp~adkL~~~~VD~G~~~~~iv~g~~~~~~~--e~lvGk~v~~v~Nlkp~kirGv~SeGMil~~   86 (111)
T d1pxfa_           9 FARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSE--EELMGKTVVVLCNLQKAKMRGETSECMLLCA   86 (111)
T ss_dssp             HHHSCEEEEEEEEEECCTTCTTCCEEEEEETTEEEEEECCCCTTSHH--HHHTTCEEEEETTCSCCCBTTBCCCCCBCEE
T ss_pred             hceeeEEEEEEEEEEEcCCCCceEEEEEEeCCcceeEEEEcccccCh--hHhcCceeeeecccccceECCeeceEEEEEe
Confidence            5566666655          555  5678888778888887766532  2222            378899999999999


Q ss_pred             cCCCc--eeee-------ccceE
Q psy15301        192 VLDAR--WEGK-------CQRRW  205 (947)
Q Consensus       192 SNADh--VELL-------PGERV  205 (947)
                      ..+++  +.|+       +|+||
T Consensus        87 ~~~d~~~~~ll~p~~~~~~G~rv  109 (111)
T d1pxfa_          87 ETDDGSESVLLTPERMMPAGVRV  109 (111)
T ss_dssp             ECTTSCCEEECCCSSCCCTTCBC
T ss_pred             EcCCCCcEEEEcCCCCCCCCCEe
Confidence            98875  3344       57776

>d1gd7a_ b.40.4.4 (A:) TRBP111 homolog CsaA {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Myf domain
domain: TRBP111 homolog CsaA
species: Thermus thermophilus [TaxId: 274]

Probab=97.31  E-value=1.7e-05  Score=67.09  Aligned_cols=29  Identities=17%  Similarity=-0.324  Sum_probs=25.0

Q ss_pred             eEeEEecceeeeeccCCC-ceeee-------ccceEE
Q psy15301        178 LVLVSLSTGDLDCGVLDA-RWEGK-------CQRRWK  206 (947)
Q Consensus       178 ~lrGIKSqGMVLCASNAD-hVELL-------PGERVf  206 (947)
                      +++|+.|+||+|||++++ .+.||       +|+|||
T Consensus        73 kirGv~SeGMiL~~~~~~~~~~ll~p~~~~~~G~ri~  109 (109)
T d1gd7a_          73 RVAGFLSEVLVLGVPDEAGRVVLLAPDREVPLGGKVF  109 (109)
T ss_dssp             EETTEEECSEECEEECTTSCEEEEEESSCCCTTCBCC
T ss_pred             eEccccCCEEEEEEEcCCCcEEEEeCCCCCCCCCccC
Confidence            889999999999999876 47777       799885